LOCUS       KCLA01000001             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15upu ultra-conserved element locus uce-4516,
            sequence.
ACCESSION   KCLA01000001
VERSION     KCLA01000001.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-4516"
BASE COUNT          215 a          111 c          106 g          215 t
ORIGIN      
        1 atcttatgta gttttctaat gaaaaacaaa gcattgtttg gaaaaaaaaa tccaccacta
       61 aaaaacccac aagggcattg tatttgaaat atgtgcttgg tgacatggat ctgattgccc
      121 aaaggaatga ggatgcatat atttgtatta ttgtacacgt gagtagcttc aatcatgtac
      181 tgcttgtctt ctttgtttgg attatgcagc ttggctgggc aaccatccaa aagattcaca
      241 ttaaattcta gctatattca gcacaaaagt catctagcat gagaggatca aagttacatc
      301 aaccaacaag cactaaggaa ttgataaacc actaaaatta ggtcatctcc tagcagctgc
      361 ttttgatgga tgaagtagaa tttagcctca ggttttctat ttaaagatct gttatagcat
      421 cttctccttc agctgcaacg acaacaaaac aaagtatgtt tctgattaaa tgtttaatca
      481 tgactcttta ctcttgtgat tatttctgcc atgacacata tttactgtgt acactatttg
      541 caactttcct aaccctttca aaactgatat taaaatagtt aagattttta attctgtaaa
      601 acctaagaga tgggtttttt ttaaagtgtg gataaaaatc ttgcaaa
//
LOCUS       KCLA01000002             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30upu ultra-conserved element locus uce-5301,
            sequence.
ACCESSION   KCLA01000002
VERSION     KCLA01000002.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-5301"
BASE COUNT          169 a          128 c          135 g          160 t
ORIGIN      
        1 caactccacc atcctccaac tggccaacgt ggaggttgga gaccacacgg ggatcaaagc
       61 gatatgagga caacaggggt ttcattaaaa tgttctcctc tctgcctgag gaaagagcag
      121 tgaggacagg gtgagagggg gaggggggaa gggaaatcat ctggcccaaa caagtttaac
      181 taaaaaaaaa atccaagcaa accacctgtg gtctccttgg aaactggctt gcaacccctc
      241 cagccacctt ttaatgaaac cccagagccc ctttattaat ttattaaaga atctattttc
      301 tgaagattca taaaccgcgc ataactcata ttccaacaca tctctgctat gctaatagcg
      361 catgctgcca tgaataatta attctttaat tagtaataat tagaggttgt tgtataggtc
      421 aaaccattgg gctgacagca tgctactgtc aaaatgtcat ttgaattaag ggggctgcgg
      481 ccctttctaa acaaaatgat tcgtcattcg gagtcggtgg ttccctcctc tcccaatgtt
      541 gcggttggtt tgctttggag gggctttgtg ataatttaat ggcatttgtg gc
//
LOCUS       KCLA01000003             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46upu ultra-conserved element locus uce-3360,
            sequence.
ACCESSION   KCLA01000003
VERSION     KCLA01000003.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-3360"
BASE COUNT          136 a           73 c           45 g          122 t
ORIGIN      
        1 ttctttgttt tgcctttttt ttttaacaaa aattaatcta tacaccgatc taagttacag
       61 aaacaaaaat aacctttata agatcacatg tataaaacaa gaaatgaaat gtgattttat
      121 ttaaggcaat actgggctac ttcacaaatc accacctcaa atatatacac tgctccacac
      181 tactaatttt ctatcacatt cacaacgggt tctcaaatac caaatatcgt ttgaaatctc
      241 cgatgtagca aactattttt attcacattt cctttttcgt tatggaatca taaatgcttt
      301 gtatccaatc aaaagcaatg gaaaacgtag ctctaagaaa actactggat ttaggagtta
      361 actacgcacg gaaagc
//
LOCUS       KCLA01000004            1040 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 62upu ultra-conserved element locus uce-601,
            sequence.
ACCESSION   KCLA01000004
VERSION     KCLA01000004.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="62upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1040
                     /note="ultra-conserved element locus uce-601"
BASE COUNT          323 a          220 c          194 g          303 t
ORIGIN      
        1 atgctccacc acgtatgtgc acaatttacc aggcacttca attccataag atacctcaag
       61 cagtaactga atacatagct tagatgctct ttgtctctcc cagaagagat gcgcatggcc
      121 atgtaatgac gctagttgta atgcaattta tttggagctt ctgaaatttt agatcacagc
      181 attctataat caatattgtg cattatttag ccacagtatc cctttagctc agaacctaac
      241 tagcgtaatt catgcaaaca ggagtctcaa gtgcacctag atatgtttag cgtaaaagca
      301 cttacatacg tataacattc aggcacaatc tctatttatt gtctcagttt aagtcttgga
      361 tgcttccgtg aaggacccac taaagaggac aagacagcat gctggccctt taaaactgaa
      421 acgcttgttt cctttctgta agaaaagtaa atcatgctat agtgagtgga gctttgaaaa
      481 agcatccatc cattaaagtt catggatcct cgtttccaga ttgtccctcc cctggctgtg
      541 tctcaagtta cagccttgta caatccaagt ctaaataata ttcactatga taaatgacac
      601 cataactccg atatccacaa tcaatctttg ctttaaagat acatccatct tcaataatgt
      661 tgatggggat tctgtaaaat gggaaacgtg actgttttcc cgacctccta acagtggggg
      721 aaggaagctc tgagtgatgg ctgtcagccc acatctggct gcaaaaataa attagcctta
      781 tgtagacaaa tgaaaggacc agccctgact agaaaacagc cactcctgag caatggctaa
      841 tttataggac tcctttctgg aaagttccta actgagacta cagtctcctt agctatctct
      901 ttaaatgata tctgatgctg taaataactt cagtgtggta caaactatgc aaagtacaaa
      961 gagtgatttt gtgggggaag gggaggagac aataactttc tcacattctt tgtacatgat
     1021 caagatgtaa aattcagtca
//
LOCUS       KCLA01000005            1113 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 77upu ultra-conserved element locus uce-85,
            sequence.
ACCESSION   KCLA01000005
VERSION     KCLA01000005.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="77upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1113
                     /note="ultra-conserved element locus uce-85"
BASE COUNT          347 a          231 c          188 g          347 t
ORIGIN      
        1 ttcactgatt ttattcttaa cattcacaga aagacacaat aggctcctat gtcttaatat
       61 ttttattttt gtaagataat gaaaaacaca aaatgattgt tctagctgca tgtgatctgt
      121 tgaaagcttt attaactaca aatggagcta tttcttactt ctgaccccag ctccagaaac
      181 tgagaaaata tgcagtaaat acaaagcatg gagctagcta atcactagct ttgcttctaa
      241 gaatattttg ctctggaatg taggtgactg tgattcagca taaaaggcag ctgaaagcca
      301 ttcaatactt tcattggaaa gaaaaagaag ttatcgtcct cctttctaac tttagtggtg
      361 ttcgtttctg tgttctcttt cagtctttgt taaaaaagaa aaaaatttaa tgatactatt
      421 ctcattatac agctatcagt tgcataaaat atctttgttt agaagactaa taaatttggt
      481 catataaaga ggaaattaga tttttaatgt aaaatgaagc tgacagtgct cttctattac
      541 tatggtctta ttagggaaaa attctctgac atctgtttat cccctgcagc caaccttgta
      601 ttcagaatgc agtaattgat tcacaccatc cactagggat ctaactggct cacttttcca
      661 caccgcacta cacaggtatc tctgcagcta attctgaatg tacatctaca tcgttatctc
      721 ctggtgaact gtgacccaaa acactttgga ggcccagatg aaagtgcttc ctcacccctc
      781 cagtgctggg ggtgcaggca tttctgcagc atggcaattc acccaggaca cccaatcaca
      841 accagcccct ttgaagccct gctcagctgg gagaccatga atgattcatg gcttctctac
      901 acacactaaa gggggaagag caaagctagt gtgtattatt caggactgca tcctcaataa
      961 gcctctgtgt tcagcaaatt gctacaacat tttctgctta gtcctcacct gtacacaaca
     1021 tctcattttg tgcacaacct tctcatttta acaaaaataa gatgattatc taggaggcca
     1081 tgttaattaa catcaatata aataaagaag att
//
LOCUS       KCLA01000006             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 93upu ultra-conserved element locus uce-7852,
            sequence.
ACCESSION   KCLA01000006
VERSION     KCLA01000006.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="93upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-7852"
BASE COUNT          155 a          111 c          100 g          157 t
ORIGIN      
        1 ccctcccctt ttctttcctc ttctttcaga tgatcctctt gttttgcatg tgaaaaaaat
       61 cgtctgagat ttacagccct cccaaatgga gataaagcct tggcaatgag ttggaaacct
      121 gttgtaatct gtgatccagg aaacaaagag cctcattaat gcagagactt tggtgagcct
      181 ttgatgttag ctagcatagc attcactctc ggttccattt gcatttaaac attcataaaa
      241 acatcatctc tgcttccttt gccttaagca atttaggagt aaagtatagc ttctatttaa
      301 agaaacccac tgtggtgagg cttagaatac aaatatcacg gcgtcttcaa gcagagcaaa
      361 tattttatcc tccctttcgg gtgggcacgt ttaataatgt tcaagacccc aaaaagaaga
      421 tccatcttat ttttgtcagc tttacatatt ggaaggaaaa gagaaagggg gttctgctaa
      481 ttctaaaggt accacacagc agttggtgga agcaccaaaa cgc
//
LOCUS       KCLA01000007            1119 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 109upu ultra-conserved element locus uce-7885,
            sequence.
ACCESSION   KCLA01000007
VERSION     KCLA01000007.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1119)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="109upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1119
                     /note="ultra-conserved element locus uce-7885"
BASE COUNT          242 a          303 c          295 g          279 t
ORIGIN      
        1 ttcaggccct gccctctcat cctgccactg gtcacatgga agaagacccc caacccaact
       61 ccaacctccc ttcacggggt tgtagagagg gagaaggtcc ctgctgagta agagaatggt
      121 atcgatgacc catttttaag cagcctctca gtttccactt gaaatattta accctctgca
      181 acaatcaccc ccccatgcct tgcctcacgc cacgacaagg aactacagac aaacaacgcg
      241 aagacagaaa gccagatgcc atccccacac gaagcaatga ggaagggaaa ccttccacaa
      301 caggcagtgt tttctactaa ccctagtagc gtcttctgta cagtcttctc ttgaggagcc
      361 aacagatctt gtgagtgact tatgctgcac ctgtggagat aacagttgca ggctatttgc
      421 cctggctgcc atcccttgcc ctacgcttaa gccaccctct gagccctttg acctcactct
      481 gtcccggctc acatacatag agtgtctatg agggcgctgc tgtgaagaaa aaggactggt
      541 ataacctaga ccataggaaa aagactcatg tggagcagac agagagtgag aatggcttcc
      601 atccatgtgc tctggcagtt ttaactcctc cattgttttg gagtgcctcg ttgctggtct
      661 tcgggtgtcc agggtgccct cgctgcggtt attcctcgcg gacggactga gcaaagtcct
      721 gttatcgccg tgtcgcggag cggttggact ggtgggagag ttcaagtcca tgcagctgga
      781 tggaaaatac ctgctgctgt tgggttctgc agcctgggcc ctggcctccg agaggttacc
      841 cacagatttg gagtctgtca gaaccccgtg gctctttgcc ttggtgcgat acgacgggct
      901 cttcgaggac tgggggatcg tatcgatgta actgtggcgg ctgtgcttgt cgccgggttg
      961 cagggtgccc gttttgctct gagaggtttc cataaacgag tggcggttct gctgggacct
     1021 gctgtttgac ttcaggtact tggtgcctga accatccgaa ctcttggggt ccacattaaa
     1081 atcaaactct gctttggcct tggtatcctt cgggctgag
//
LOCUS       KCLA01000008             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 124upu ultra-conserved element locus uce-5110,
            sequence.
ACCESSION   KCLA01000008
VERSION     KCLA01000008.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-5110"
BASE COUNT          189 a          119 c          130 g          219 t
ORIGIN      
        1 tttatttttt taacattatt ttataaaaga acacagaaaa tgcagagctt tgtgtgcctt
       61 ccatctgact tctgttgctt taactcacag gctggtcttc ctccctaacc cctttgttaa
      121 caagtggtgg tcctgttccc ctgggtggca ggcccaccct tcttcaccaa gctgctgccc
      181 agggaaatgt cactttatta tcaatgctgc ttaatgaaga aggactggac attaattact
      241 cttgtgaaga tggctattct gccttgtatt ctgctgctat gaatggacat acaggtaagt
      301 gatggtattc gtgtaaaatt gtgaaagctt atttcatatt ttgttagtat taagtcaaat
      361 gcatgtattt taaaaatgag aaattgaaac agaggtatat ggatgatatt acattagtca
      421 ttgtgtggtg tgtatataag cagtgcttcg ggaggcagag tttttaaaca atgaaagcat
      481 tcttccttgt gataattctc aggaatagcc attctaattc ttgactccct tcctacagaa
      541 atccagcaga tatcatcacc ttgtgttctg tgacaaagaa agatcttttc tggcaaaggc
      601 aacttgaaag aatttctcta caaggaataa gcaggaaagg tcataattac cagtgtt
//
LOCUS       KCLA01000009             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 140upu ultra-conserved element locus uce-5144,
            sequence.
ACCESSION   KCLA01000009
VERSION     KCLA01000009.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-5144"
BASE COUNT          131 a          167 c          120 g          166 t
ORIGIN      
        1 cttgctgtgc aaccacggta ccagcctgca gccctacagc tctgttttgc accaggcagc
       61 gccccttgca gtccctactg ggaggttaat ccagacctat tgcctgagct aaactaaaac
      121 ccagaaacag cgcggaagca gcatccgtta cctcgtgtgc cttcagctgc tcattggaca
      181 cagagccccc tccctccagc atctctcctt ctttaatatg gtttttttta atttgttttg
      241 atgaatgagt gacagccctg acacccgatt cgctgagatt aatagaaacg acacaatatt
      301 tacgtcgtgc cgacgagcaa ttatcctgcc atctatcttt gagattatct ttctgattga
      361 aaactactca tccgtgtaat cggaattatt tggaattaga agggaattta tggcacctct
      421 cactctccct cctatttgcc tctgtctcca tccttcttcc cctttcttta aacgggatcc
      481 tttcctcctt cattccttcc atcctgccta ccgggggcat agggtgagtc ctgcacagca
      541 gccggggagt gaaagaccct tcagaggagg tctggcgtgg gaaa
//
LOCUS       KCLA01000010            1068 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 155upu ultra-conserved element locus uce-2689,
            sequence.
ACCESSION   KCLA01000010
VERSION     KCLA01000010.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1068
                     /note="ultra-conserved element locus uce-2689"
BASE COUNT          310 a          193 c          209 g          356 t
ORIGIN      
        1 aaatgttaca ggtagtgaag tttgaactga gtgtaattca gacatgtttc agaaatccct
       61 gttttgtgga tgaaaaccag tttgctgaga cccccttcct ttgggcagat gttgtagagt
      121 tccattattt gtccatactt ttacctgatt tacagccagt aacataagag gatcttgggt
      181 gagagctcag atgtgcgagc cccacaatcc catgccttgc atgttctttt aaacatttgt
      241 gttgactaca tcttgaagac agggaaaatc cttcagtgat ccagactgag tggattgaat
      301 taatggcaac tttgagacta caagttttag tgtaattgct ttattgtctt ggaaccaaga
      361 tgcttacaat ctagttcctg tgcaaacatg tttaacgtgt gttaatgtgt ttcaaaacca
      421 gaccctctcc acagaatcct gcttttcatt aatggacatc agtagcatgg tacagtattt
      481 caaagcaccg gccaaatata aactgtgttt ctaatttcct tactttcctg tgtttggaat
      541 gccaatgtta atttgttccc atggaagagt gagacctgcc aaccacagtt ttatataaat
      601 ggctttacag agcagggctg ccaacattaa atgatactta ggaattttca tgacgttttg
      661 tatttaatgc ctgtatgaga gaaggagaga gatatgggat gctgaacagc acagccactg
      721 gtgaacaggg cgaatgttgg aataaattta tcctttgcat agcatttact tgatgttttt
      781 tcttgtttaa aatattttac taatcttata gacattacat attacattcc ttctacctaa
      841 aaaaatctgt ttcgcagtga attttgttgc tgactatcca gagagttcca tggtcccccc
      901 tacctcccac ggttttagtt atttattaat agatgagcag gttttttgtc tgtgttgctg
      961 ttctgatgat tatgaactct gttatgagaa catgatctta cacagcatga gaaaatgtaa
     1021 aaaaaagaaa agctgccaca actaaggatt aaccgttttg attaaaac
//
LOCUS       KCLA01000011             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 185upu ultra-conserved element locus uce-2619,
            sequence.
ACCESSION   KCLA01000011
VERSION     KCLA01000011.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="185upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-2619"
BASE COUNT          152 a          129 c          108 g          189 t
ORIGIN      
        1 actctccctc tccctcaatc tctttctgtc tcccttttta atgcccacat ctccactatc
       61 aggaacaaat atgatttctg attgaacatc actttatttg ccagttctgt ggtcttttct
      121 tatcttgttc cacacttctc aggctttgtg gttaaattat gtattaaggt caatgtcaaa
      181 acacggaaga tctgtaatct acagggagct cccttttatt cgttattaca gtgaaggctg
      241 agcgcaactg tcagggagct tgggatgtgc tcagcatgga ggcttgctac acagcagggc
      301 tctacaaagc ctctctcctt gttctcccag gacgaaccct tgatagattt acccagataa
      361 cccatcttac tttaaagctc tcttgtctct gcttcaatct gaaagctgtc aagtgcacct
      421 atatagtaat gtcataaatc aaacgtaaaa tgtgtacact ggagacactg cgagtgtcat
      481 gtattcactt gtactttgag atcttctaaa gtaaaatggt gtcagaataa ggaaggctgg
      541 gaggaatgtt tttttcctta aaaacgactg aatatttg
//
LOCUS       KCLA01000012            1038 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 200upu ultra-conserved element locus uce-3329,
            sequence.
ACCESSION   KCLA01000012
VERSION     KCLA01000012.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="200upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1038
                     /note="ultra-conserved element locus uce-3329"
BASE COUNT          301 a          235 c          267 g          235 t
ORIGIN      
        1 tcgatacgta ccaaagtgtt tgaaaccaaa acaatttcat tattttaatt gagagttttg
       61 ccagattaaa aaaaagtaag tgagctttgc gcattatagt agcgaggaaa attgctgtgt
      121 tatgttagag aatgtcctct acatttcagc agaatgcaga gctgtaacta gcgatgtaaa
      181 atagtacttg agggcttttg cagtgcttga acagtggact catttttaac cttgttggat
      241 cctttcagat ctcagccaca gtggattggg agaccattat gagaattccc actggggaca
      301 gcagcccgct ttcaggagtg aaggcaactg cagctgggat aaagtgataa tagacaggac
      361 tgacaaggaa gcgtggcctt ccattactgg agctgagact gagtctgcct cagaatgtac
      421 tacagacact gactctgcct ccaactgtgg ctcagagaac agtagcatgg ctacagggag
      481 tgcccaaggc aacttcactg gacatacaaa gaaaactaat ggcaataatg gcgccaacgg
      541 agcactcgtc caaagcactt ctaaccagag tgcccttgga gctggtggag caaacggtaa
      601 cggcagctca gccagagtgt ggggtgtggc tgcgggctcc agctctgggc tagctcactg
      661 ctctgccagc ggtggggatg gaaagatgga caacatgatg ggagatggga gaagtcagaa
      721 ctgctggggt gcttccaact caaatgctgg cattaatctt aaccttaacc ctaatgccaa
      781 tccagctgcc tggcctgtac ttggacatga aggaactgtg ggagcaggca acccttccag
      841 tatttgcagt ccggtcagtg ccataggtca gaacatgggc aaccagaatg ggaacccaac
      901 aggcacctta ggtgcttggg gaaacttgct gccgcaagag agcacagaac cacaaacgtc
      961 cacttctcag aatgtgtctt tcagcgtaca acctcagaac cttaacactg atggaccaaa
     1021 taacactaac cccatgaa
//
LOCUS       KCLA01000013            1097 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 215upu ultra-conserved element locus uce-7738,
            sequence.
ACCESSION   KCLA01000013
VERSION     KCLA01000013.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1097)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1097)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1097
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="215upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1097
                     /note="ultra-conserved element locus uce-7738"
BASE COUNT          318 a          185 c          217 g          377 t
ORIGIN      
        1 aaaagtagtg tataatagca tctatttcct acagtcactt agtttctaaa tgggatatct
       61 tagaactgtt ggagttgcta taatttcaga taaaatgtct tcctgcaggc aaaagatgat
      121 ttttcacaag ctttaaaaaa actaataaag tagtaatctg cagtatttta ttatttagga
      181 ccccagcctt ggggatatga tttgcaagga ttttttttat atctcaattc agggtgtact
      241 tgtgagcagc ccgtgtgaat atatctgtca gtcttttcta gatttttttc ctctgtacca
      301 aaggctgcct gcattcagtc cataaaaaca ctaccacctc tttaagtggt aatgctccct
      361 gcagagtttt tagcctgtag gagatatgat tagggggtga tagtgttaag cacacctcct
      421 gtatctgctg gctcactatg ataaccttag ggttacaatg catgtctgac aaatacaatt
      481 ccattgtgaa tactgcctta tggcaattta ggaggcttat tcatcatttt acaacaggct
      541 tctgtcaggg attttgctta tttgcccttc actggtgcac agtagttgta ggtttatctc
      601 taggagtcca gctctaataa ccaataacaa agtgcttaag ctgtaagctt gtgagaaatg
      661 gacgtgcatt atactctaac tgcaccttag ctctcggctg ataagacaat gtgtctttga
      721 gaataggaag gatttatacg aactgatctt ttacatgttg gtgtactcat tggtagaaga
      781 tatgaggaag tacattgtgt tctagccatc taaatcctag ctttttacat agaaaatgca
      841 tccttgccat cattagaaat gtttccttta aaatatgaaa gtgaggagat atcttgcctt
      901 ggaaatcaca ctacagaatt gtttgtaact ctgatgtggg atttggaaga actgagttac
      961 ttttgatgaa atccccatga ttatggttta aattacacag atttattcaa ggaacaatag
     1021 aagttttttt attattattc agattcctgc tgggttctgg atattaatta ggtagtggtt
     1081 ccagatgaaa tccagga
//
LOCUS       KCLA01000014             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 231upu ultra-conserved element locus uce-4111,
            sequence.
ACCESSION   KCLA01000014
VERSION     KCLA01000014.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="231upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-4111"
BASE COUNT          267 a          212 c          135 g          271 t
ORIGIN      
        1 agaaaatatg atcctgataa accatggcac agatgagaaa cctacttctc ctaagcaccc
       61 tctcttaccc cctcaggatt tcccttattt tttgtcacag gtcacagtgt aacacagaaa
      121 aggtctgatg caaggaagcc ctgctccagc attcccctct ggtcttcccc acaaagcccc
      181 ttcgcttaat tcctcaaagc ccagtgaagc cctgtcagca tctccactac cactctggac
      241 acagaagtgg tgcaggtacc tccgcatgca attcagcatc aaatccgaac ccctcagtgc
      301 tttctggaac acccagagct atcttcagaa tcccaaacaa atacattaat tgctttcgat
      361 ttatcagcct caaatcattc tgtctaatta ccattcatct ggagtttgtt tttttaatgg
      421 tttatgggta ttgttggtaa tcttttaatt tctcattaaa aacaatatct tgtacgcact
      481 atgtgtgaaa agccctaatc cgataaatca agcaagagta acacagttaa aaggaaatca
      541 gtggaacagt atttgggttt atatatttct gccagtcaat ttgtaattaa aagttgctac
      601 tttaaaaaac acagttgttg ctgtgaaagc cattatcagt cggcattttc atatgaatac
      661 tgctttaatt aattagcaaa agtaaataca ttatatatca aaaaccgctt tcccactgaa
      721 cccatgcgtt ccagaacaaa aggcttaata aaccatacaa aagagggaca aattagctga
      781 tcccaccctc ccttttcagg tttagagtct tttaaagttc tccaaggccc cccctccaca
      841 tacttgcttt ttttttttaa tacattgttt gtttttcttc agaag
//
LOCUS       KCLA01000015             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 247upu ultra-conserved element locus uce-6409,
            sequence.
ACCESSION   KCLA01000015
VERSION     KCLA01000015.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-6409"
BASE COUNT          296 a          144 c          162 g          265 t
ORIGIN      
        1 gaacaaaaag aagtaagttc agtgaactga ataaatggga taatctaatt ggccacattg
       61 cctggcccaa agtagactag tgtggttaaa aaacacgttc ttgtaaaaat aagtaaatta
      121 atcagaaact gaatttcaat ttattttaga ataaaaatga tagcaaatgg ggagggggaa
      181 aaaatgaagg tagatattta ctaaaaaaca cagacaatat gaaaggatta aaatgcttta
      241 atcagacaga aaaaaaggct ttggctactt gattagggct gatttccacc atctgcttat
      301 acttactgag gatctagccc tgactgaaca ctaatttgtg cacttcctag aaattgaaat
      361 ctctcagcaa gcaaattaac aagagcaggg attcagcaat aatggagctc ctcggctttt
      421 gtttccctct gacagatgga cagggtgcgc tcaaattgaa ttcagcttta attgcattgt
      481 gccatttaaa attttatctg ctccacagat tttgtttaca ggtttcagga ttccaaacct
      541 ttggaaattt tttcagccct cagtgaaata aaagcactat aattctgtgt gactagtagg
      601 tgttcattac cactctttgc cctaaagggt ggcatgctga aaaaaggcaa agaattctat
      661 tttcaagcct taaattgatg ggtggagaag tacaattttt ctcactgtaa atgctctctt
      721 attgagtacc tgttcacaaa tagaaatatt attaaaagct cagccagaaa ataactgggc
      781 ttgatgttat ctttttacta aaggaccaca aaattttctc agctgtgaag tctgttgccc
      841 aaagttataa actttttgtc ttttaga
//
LOCUS       KCLA01000016             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 262upu ultra-conserved element locus uce-2774,
            sequence.
ACCESSION   KCLA01000016
VERSION     KCLA01000016.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-2774"
BASE COUNT          160 a          141 c          106 g          142 t
ORIGIN      
        1 caagacagag tagaggagag gggaacctct ctggacctcc tgaccacccc ccttctagta
       61 cactgcagcg aattccacga acgtttcccc caccctcacc gggaggcagc ccttccccag
      121 gccttctaaa ggacacggct gatctttaag cactgcactc gatattagtt tttccatttt
      181 caaataatca cattattgca gacattttaa tcgctgtaga ggttgctatg tattaccatg
      241 attcatggtc cttgacagca gtgtctctga gaatccccca ggactgcaaa atacaaaact
      301 ccacacacat tcaaatttta ctgcctgcag ctaaaagagg ggggctcaaa actgttgaaa
      361 cccttcaact ttaaaagcat taatagacgg tcccggggga ttcaatctaa atcttaatgt
      421 gtaaaaatca agttaataac cacagagatt aatatggttg catttgatta ttgtgataat
      481 gcaaacaatt agtcctgctc gagtgagatg tattagcctc cgccttgccc cacacgcatc
      541 cgcgaggca
//
LOCUS       KCLA01000017             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 278upu ultra-conserved element locus uce-5837,
            sequence.
ACCESSION   KCLA01000017
VERSION     KCLA01000017.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="278upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-5837"
BASE COUNT          193 a          139 c          166 g          233 t
ORIGIN      
        1 tgacagatag gctgtggagc aagtgtaaac ttgacatgat gtcataggaa acttgggctt
       61 tgattagctt tccttaaaca acaatcaaga tttgagatag caagaaaagg caatctgttc
      121 tactcttaag tgtcttaagt gaggtagtct tccctgtaaa atctcttgtt tcagtcctta
      181 atggatcagt actttgcccg tatgcgctcc ttgatgtcaa gtaaggaatt gccagcaagg
      241 attcgtttcc tgctgcaggt tggcttactg ctcctttttc ttgcagagtt gtcttgagtc
      301 cttccttaat aattcattct gttctaagga tactgtggag ttgagagaac acaactgggt
      361 tcctcgcaaa gcttttcttg acaatggacc aaagactatc aatcaaatcc gtcaagatgc
      421 agtaaaagta agtgcttctg cttggctatt gcttaagcat aataaggatt cgttctagcc
      481 atgtgacagt aaggggctat gggttaaagt aatatgacat tttaaagttc agggcttttt
      541 tctcatgtta ctccagagtg accaaaactg taattcctgt tttaaaggat ctgggagttt
      601 ttattcctgc tcctatgtct caagggatga gaagtgactt ctttctggag ggacccttta
      661 tgccacccag gatgaaactt gacagggacc cactcggagg gcttgctgat atgtttggac
      721 aaatgccagg t
//
LOCUS       KCLA01000018            1029 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 292upu ultra-conserved element locus uce-4751,
            sequence.
ACCESSION   KCLA01000018
VERSION     KCLA01000018.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="292upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1029
                     /note="ultra-conserved element locus uce-4751"
BASE COUNT          298 a          208 c          207 g          316 t
ORIGIN      
        1 cgttcccatc agcaggaatt ctggtgctgg ttgggctggc atcagaatca ggctcctcat
       61 ttaatttcct tcctttctga tagagagcca tgcctgtgtg cacaccacag aacatgaacg
      121 cgttgctgtc ccttgaggaa agacactcat tgaataatcc tttttgttta gtattattaa
      181 gtggaccatg gcccttattt tgcttgtttt gctgctattc ctttgggaca agcaaggtgg
      241 ccttgttcac gccactgcct ttcaacatgg tgagcaagat ttaaagaaac ataaatccac
      301 tcgagagagg gagggttaca tggcagagct gaataatggg ctgtaatagg caaaccaaac
      361 agttaaataa aagatgcaca cggcatgcta aaacttaagg aatgcatatt caatgcaatg
      421 cattattaaa tacaacggtg aacatatggg tgcctacaat taatgtatat aaatagctga
      481 taaaattgct cagtattaga aagctagcgg caaaaatgac ctcatatgtc aagcagacaa
      541 gcaggcagtt accattttct ttgtacacct tacagatgat aaattagttt tatggtctgc
      601 atggggccct tatcacatta cagcaccaag tgtttgataa agaaaaaaaa tgcctcagct
      661 aaaaatcgaa ctgaaatttg gagtccccgt ggacctcatt tttttaacgt aaagaatttt
      721 aaccaacttc cttttggaaa gatttattgc tcaaaagata aatgtatatc tctatcctat
      781 gtgcttttat tacaacttct tctcttccct ccttcttctt cttttttttt ctccccatga
      841 tattagatat gagtctgctg tagcacttac agcacaggga aggggcaagt gggaatcatg
      901 gtttctgatt ctgttgtctc tactgacctt gggcttgctg tttcagctcc ctgagatttc
      961 tccatttcca aaatagaggg gagtaggcag catctgcaag gaaaaattag tcattgtgcc
     1021 tggaagtcc
//
LOCUS       KCLA01000019             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 308upu ultra-conserved element locus uce-5238,
            sequence.
ACCESSION   KCLA01000019
VERSION     KCLA01000019.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="308upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-5238"
BASE COUNT          263 a          145 c          143 g          209 t
ORIGIN      
        1 atgatttaaa ttaccatcaa taaacttttc agaagaaaag ctaagtatag agatcttaca
       61 cacactttct ctcctgcact ggtataaatc aaaacaataa aagattagat aacagtacaa
      121 aaaaggtagg atttctataa gaccctatct tgtagctata aatggaaaaa catatgaata
      181 tgttcaatgg agctgaagtt taatattact atccaaattc cattttatcc cactgtcact
      241 gccaccaaag gaggggtttt atgttggaga taatatgata ctgcagtata agccctcctc
      301 agatttcaaa caggtcaact tgtcaaagct ttttaaggga gccaattaca ttaattttcc
      361 acagcagaga aatacatatt tcatttccat ctcccactag agatggggcc ccaggattct
      421 gtttcgaaag gctcttatca ctaagtaaca ttcgtacccc caaaggaacc tttggcagtc
      481 actggtccat tgatataatt gaggaaggta tgagctgtct gacactgcca tggcattgct
      541 caatagcgct gtgcactaag cactcggaac aatgaagctt cagcagacag tcacattgtc
      601 aataaatttc aattacacta attgccaaga gttcaatgag tgcactttca aagggaaggg
      661 ggaaggacgg atggaagata tttaaaaagc ctatgcctac tagggctaaa gaataggatg
      721 caataaataa actgcagctt ctaatggggg cattaatgta
//
LOCUS       KCLA01000020            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 324upu ultra-conserved element locus uce-6014,
            sequence.
ACCESSION   KCLA01000020
VERSION     KCLA01000020.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="324upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-6014"
BASE COUNT          285 a          208 c          223 g          294 t
ORIGIN      
        1 agtgctgatg gggagaggag tcaaatatgg agttttaagc ttcctgtgat gtgtcttcag
       61 tgaaatgatt gcagttctct aattctgctt ttctacaata ctgtgatgca tgctggaggg
      121 ctgagaggag aaaaattctt ctatccctcc tttcatggct gtgtattcag ccgactacct
      181 ttccacaagc aaactaccag aaagcagctc atcctaatgt aggttctctc atgtttcaag
      241 cacttgctgc ctgttcttgc tgtgtgttta gttacagcat gaaaaatgga gatgtggaat
      301 gaagacattt cccctttgac tagcacattt gcagaaggta tgttgaggat ctgaggcaag
      361 gggtatgggc aagctttcaa gaaagttttt taccccttct ccttttcttg cttattggaa
      421 gagcaataaa tatcaagcag acaggccctt ctcacagtta caaagcctac ctgtaactga
      481 gctggataat tagcagcctt gaagatgata tatgactttc attacccttt gggactggag
      541 actaaatgag gacagagcta attgccgtgc aaagcagttt ggcatgaatg agaaaaatgc
      601 aggcgctgtc tcctgccaaa aaagggccct attgctgctc tgatctcatg gctggttttt
      661 gccgcaggag ttcacttggt gtccataaat catggtctgc ttacagctga aacggcactg
      721 agtcatcaac atgcaataag ctgagtgaca gattccagcc tgactgcatt agaacttcaa
      781 acttagtcct cccccacaac actgcccata cttaacagaa aattaaaccc agactacaca
      841 gacatgaagg ctgtgagaaa tacaaggctt gtttacttga caatagtttt taagactgat
      901 gtttccagga aatagcatca tgtattttga aagggagagg ccagaagtac tgaatttata
      961 aaatggccca ctgttatagc atttggtttg tccttcctca tagaattgct
//
LOCUS       KCLA01000021            1078 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 340upu ultra-conserved element locus uce-4036,
            sequence.
ACCESSION   KCLA01000021
VERSION     KCLA01000021.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="340upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1078
                     /note="ultra-conserved element locus uce-4036"
BASE COUNT          329 a          187 c          226 g          336 t
ORIGIN      
        1 tctggaacag tgcgtgattg ctttttggct tcaaaagggt taatctggtt ggtattatta
       61 gcagcatgct ggcatggaaa gagttaagga aaggtcttca ggcagtaagt gttgaaagat
      121 tatcctaatt ttattagcgg tgagtgtcta tgttgttctt aatgtgtcac ctcacttatt
      181 caacagaaaa ttaagctata caaggtattg atcacctaga aaaccaaagt actagtgacc
      241 tgagatctac caaacatata ttgaccttat cccagttcag atccacaaat acagatcagt
      301 gctctctaat acacgtttgg agatcagtaa ttatgtagta ggtctgatca actttctccc
      361 tgctctggaa agagagagtt aaatatatcc aataataaaa gtaaaatact ccaaacatat
      421 tacaaaggcg taaaagacga agctgattta atggtctaat gaggccatct tccagaaact
      481 tgttttgtgt agggcttgct ttgacctttc gctttgctca ggagcccaac gcttcatttt
      541 tcacattctt gcaattacgt taacgcttca agcatttctg actccaagtc agctagcaac
      601 accaggcata actcaacact gtgagttttt ctcctctctg tagattcatt aacaggtcac
      661 tggggtccca actgaaattt aaaactgact ggttctgttg ggttagctga gttatagcaa
      721 gggagatggc aggaaagggg ctgagagaaa gggaggggag agagaatact ctagggtttt
      781 tgccagggaa tatatgtgta aaaactctaa gtggaagatt aaaaggtgtg tgtagcttta
      841 tcatccaccc ttttctttgg aggaaaaaaa aaacatctga aagtcttctg gggtattgtg
      901 ttttctttat tctttgtgaa acaaagtgaa aatggccatt gcctttacat acagggctca
      961 aatcacttgg catcattttg taccacagtg atggatatga tgctcctaga ctttaattcc
     1021 tatttaatct ctttatggga tatttcaaat aatgaatatg gtagattatg catgaaaa
//
LOCUS       KCLA01000022             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 356upu ultra-conserved element locus uce-3046,
            sequence.
ACCESSION   KCLA01000022
VERSION     KCLA01000022.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="356upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-3046"
BASE COUNT          198 a          132 c          109 g          229 t
ORIGIN      
        1 tctttctgag atactgggac ctccttaatt tttcatttta aaaatttaac taaattacta
       61 gaattatttt atacatatta ctattctcaa acatcaaatt acgaagtcct gttacactgt
      121 aaaaagctgt gataatataa gttgctctct tacataaata aataaatgac cgatattact
      181 ggaggcttta ggcttcaaga aaaaaatgaa agaagtcttt tatcctggtt tttagagggc
      241 atcagcagct tggttttatg aaaaagtaac agctaaatgc actgcaaata atttgcagta
      301 atccagttca gtgattcatg tgtctgcttt aatgggtcat aattcaggat aaagtaactg
      361 agtgcagtca gagtgcagac actgcttatg ccaggaacag tatctcttca taaaacacac
      421 ctcagcagaa gcagtttgcc agccccctaa taccctctga tgttttgatg tcctgcatat
      481 ttttccgatt aagttttgag tgccatgttt ttagttgtat ttccacattc attatcctca
      541 cgtagaccct tcagcgggtt tgccatatat gattattttt ttaatgatgc ctttctttcc
      601 acttcagcag tttaataatc tagcacatgg ctgcttctcg gtactcagca ttcacctccc
      661 cagtacag
//
LOCUS       KCLA01000023             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 370upu ultra-conserved element locus uce-6082,
            sequence.
ACCESSION   KCLA01000023
VERSION     KCLA01000023.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="370upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-6082"
BASE COUNT          198 a          101 c          113 g          180 t
ORIGIN      
        1 aggaagagtg gagaaagaac tacatgaaag aaaaaagtag ataaatggaa aaggaaatct
       61 taataaggtt cttttttctt ttcttatttt tttggaggct gctgtattaa attaaagtca
      121 tacataggtt tcaaagaaaa tcgtatgtcg gtggaatggt gagcccacct gacaacgcat
      181 gctaacagaa ttgtaaatgt aaagggtaat gcttgtcact tcctgacagc tctaaatggc
      241 cttttagttc agtacgcaga gctgtcataa aaaaacataa aaatgcatat gcagacagct
      301 gaaactgcaa cgcacatcat tatctgcaaa tggtataagt atcctgaaca aagggccttc
      361 cagtttaagg acaagcataa gacatttttc tgcctctagc cttaaaacaa agtgctgtca
      421 agaaaacaag attctcagtg ccagaactga ggattttctg tcaatcagca aggtgctaca
      481 tttgtacata tttttctgac cccaaatatg agaagagcat ccctaacaga tgtgtattta
      541 acttctggca gatacatctg tttcttctgg gttttttatt ttttattatc tt
//
LOCUS       KCLA01000024             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 385upu ultra-conserved element locus uce-3942,
            sequence.
ACCESSION   KCLA01000024
VERSION     KCLA01000024.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="385upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-3942"
BASE COUNT          156 a          151 c          142 g          151 t
ORIGIN      
        1 ggtaagcagc acaccctgag tgacagatca aactaactta cacgtccttc cctgcaagaa
       61 atcccatgcc cagctgtcag ccttgttaac ccaggtcgct ctccttctcc cacagccgcc
      121 cttctacagc aggaacacgg cggaaatgta tgacaacatc ttgaacaagc ctttgcagct
      181 gaagccaaat attaccaact cggctagaca tctcctggaa ggcctcctgc agaaggacag
      241 gacaaagaga cttggtgcca aggaggactt tgtaagttca ggcagcacgg gaggatgact
      301 aggccatcct gcttacccta acctgggtct gaattaatcg atttttctct ctgtaacaga
      361 tggagattaa gaatcacatc ttcttctctc caattaactg ggatgatctc attaataaga
      421 agattactcc tccttttaac ccaaatgtgg tatgtatcac ttctaattat agagtgcacc
      481 tagtgccttg tatttgtgtt ggtgaggtgc ccgggagctg ggcgagtggc tgatggccgt
      541 ttggggagca cagctttacc ttctcaattg gctgtccagg caaagctgga acggaggagg
//
LOCUS       KCLA01000025             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 400upu ultra-conserved element locus uce-7865,
            sequence.
ACCESSION   KCLA01000025
VERSION     KCLA01000025.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-7865"
BASE COUNT          231 a          221 c          255 g          254 t
ORIGIN      
        1 aagagccttg ttgcagcggc tgaacagtac agtggaggga aatactagtg aagagagaga
       61 atcttgtgcc tggcacacag ctaggatggt gatgtctgca gtgtatctgt gtggacaggc
      121 ttagcctgca cccaagacag tgcagacagc tctaactctg cactgggctt tattcagtgc
      181 tacctgagcg cagcacatct gtccacatag atacgccctg ctgcaatggc ccctggagtc
      241 atctttcctc caaactgagc aatccttgcc ttatcatgct cttggggtgg gaagggttaa
      301 gggggacatc agtcggtagg tgtgtaagcc atagagcttt cattgctttg tgcttcctct
      361 agcagaaaca gtatgcacct tacttgtcca attacctcta ccttccttgt tcctcccaga
      421 aatcacctgc taagaagcta actaatgcac ttagcaagtc tttaagctgt gcttccagcc
      481 gtgaaccttt gcacccaatg ttccctgacc agcctgaaaa acctctaaac ctggctcata
      541 ttgtgtaagt atctgtgtgc tgtagagacc gtgagctttg ctgaaggaat cgcttacacc
      601 gagtgtgggt cctatagctc tgaccaaaag gggaggccac tgtggtgggg caagctcagg
      661 gcatcacaag ggcaagtttg gttacggggg tgttgagtac aacagtgtgg cttcgcttga
      721 gatgtcactg tgatatgtta gcgtgactgg agtgtactgt cggtgtgtcc tcatgctcct
      781 caagagacag ccgtgcagtt tcataaagca tcagcactgt gaggtgtgtt catgccaaga
      841 gcattagttt tatcagctgg agactctcag ctccagggta tcacggagag atcttggccg
      901 gaggcaccag agaaaagtga agtctgatga attttgttga attcagagtt ccaactgatg
      961 t
//
LOCUS       KCLA01000026             915 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 416upu ultra-conserved element locus uce-5699,
            sequence.
ACCESSION   KCLA01000026
VERSION     KCLA01000026.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>915
                     /note="ultra-conserved element locus uce-5699"
BASE COUNT          219 a          198 c          225 g          273 t
ORIGIN      
        1 aagctggaac atccgcagct ggggtaacca gttgtgttgc tgctgttgtt gaacgctcgg
       61 ggagcagcac caggatggtg ggtgcatctc tgcacatggg gaaggttccc agctagctgg
      121 ctgcttgtgc cctcagtcac acagcactgt ttgggagggg tggcagttcc ctgcacacgt
      181 tttggaagtt tatctgcagc tgtgctgtag ggacagagtt ctagtgtcag ggaaattaag
      241 ggtatctgtt tcttacagat gcaccacttg ctgcgggggg gtttgtgtgc attttaggtt
      301 tctcttctta ttttttaact tattagctct gacaagtaac ctcttggttg tgaacaattt
      361 aattcacaat tcatttttct aattcaaagt gaacacgagt gccctaatcc cctaatggga
      421 attaattgca tgtttcagtg cttaactctg atcccttctc aatccccact gggacaagtt
      481 tcttcctgaa ggatctgtgt gtgttattca aaacacagtc tgaaaggtaa tgatttttct
      541 tctacaaggg agtcagactg actgactatt aacgtcgttt ggattgtggg ggaatgagct
      601 gcatcccccc aaactcgtgt cacaaagcct acactgaact ggatctgata aaatacaggg
      661 caggggaatc agcgtggtcc tgtttcctca agcaaagact gtttccccgt aactcaaggt
      721 gcacaccgtt tctgctgaga aaagtggatt ctgttacaga gaaaactgtt tacttcacca
      781 agggggaaat ggctttgtgc tgactcttaa gtggtactgc tcttggccag cagtgtgtca
      841 taacctgcct gctccagctg tctactgaag taacagtgaa cagcagaaaa tagattaact
      901 ttctccgtct agtct
//
LOCUS       KCLA01000027             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 432upu ultra-conserved element locus uce-3823,
            sequence.
ACCESSION   KCLA01000027
VERSION     KCLA01000027.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-3823"
BASE COUNT          209 a          146 c          138 g          192 t
ORIGIN      
        1 ttctctagtt ccaaaatcat cttcacaggg cggaaccgca ccagcgagaa ttaaaagcgc
       61 agaccattct gtagcaaagg acgagcgaac agggctcgtt ttcctttagc atttcactct
      121 gctcttttcc tgaaaggaaa atccatataa atttatactg tttgttcttt gcttctctct
      181 gatagttgga aaacagctgt tgtaccgcat tggactttga ctggctagat tgcaaggctc
      241 aataatctgt ctcagctcag ggttaagtga tggaattcat ttaaatgccc cagaagtaat
      301 catccacaaa gagtacatta tttctctttt atgaattttc aaacctaata ctgatgggtg
      361 gcatgcaatt aaagctgatc aatatgtaat ttaggtgggc tgacatgttt tcaaattctc
      421 agaatataga ttctttcaat attgcaggag ctcagtgaaa tactcagccc ttacgccgaa
      481 gcggttcagt acagtaaaac aaccaaaata tgcctattcc gaagataaac gaggggaaaa
      541 ttccgctcac agacactcgc ttcaccggga attaattctc tgggtctaaa aatgagccct
      601 tccctagcag aatcaaaata gctgtcgtga aaggaattaa cacgcccgcg gagagggtta
      661 cgtagtgccc tcaataaagc tgaag
//
LOCUS       KCLA01000028             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 447upu ultra-conserved element locus uce-4344,
            sequence.
ACCESSION   KCLA01000028
VERSION     KCLA01000028.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="447upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-4344"
BASE COUNT          119 a          102 c           66 g          138 t
ORIGIN      
        1 catcaaattt tagatgaatt atcaaaagaa attggctgga gcacaatgca tgctttttag
       61 tgacctatta tttctcttca gggttactgg atgcacacag acattaatca aaacacttac
      121 aaataagatg tttttctccc tacctgtgca cagagaactg cctttacgtc tcgttttctt
      181 cttcctcaat ataaaatgat tgattgattg ctcacagctt gcatgactcc ccgctgccct
      241 agatccatct ccgctcttcg cactccatac agttcttgca tcattgactt tctgccagcc
      301 attttgctgc cagtgcatga gctgacattt aatgatcttt agacgcaata atgtcacatt
      361 tatcactctt tatcggttgt gacagaccta aattcaaatg caaacatgaa atgcagactg
      421 aatcc
//
LOCUS       KCLA01000029             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 462upu ultra-conserved element locus uce-3725,
            sequence.
ACCESSION   KCLA01000029
VERSION     KCLA01000029.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-3725"
BASE COUNT          305 a          202 c          233 g          225 t
ORIGIN      
        1 tttatccacc acctagtgtc atccctttat tttcagtaac attattaata cactgaacat
       61 gttaaaatgg ttgagttaca gcagttttcc caggcgcttc tgacgagatt agactgttgc
      121 ttcaaagctg ccgctttgag cctcaccacc tctaccttgc aaagaccaca aaagcacaag
      181 caatatattc tccgctcagc cacgtgcaaa gatcttacct aatacaccac taggttcaat
      241 aggatactca aggattgatg tagctggtgc cagcgtgtag gggtattcat atggtgtgta
      301 aattaaacca gcttcgggtc cgggtggaac tattgcagcg gtgggatgag gagttccgtt
      361 tggcatgaca gcggtttgta tttgtctgat caaaggcatt atggtagggc cagctggcgt
      421 aggagtacgc agggcagctg gtgggagaac aggcgcaggc ccagtaataa tccttggagc
      481 ctgggctgtt gctgcaagag aaaaggcaag ggctgctaca gtaagcaaag aaattcagag
      541 gaaagtatgg agacagcagt acaaaacgtg gaaagaatgg gaaaaaaggg gaaaagtagg
      601 aaagaagaaa aataaaagga aatcattagt acatgcgctg atcacacagt gccaaagcac
      661 accattcaaa tgcaaacagc tttccatttt ccagtgtgat taagtatgaa catgcaaaat
      721 aaaaaagcca tcgtcaaaca gtgaggtagg ttctcaaaca ggttacgcag cacaaaagct
      781 ccgtttagag cacgtttctt catttacgct accaaggctg catgagactc agatgcatgc
      841 aggagatacg aggagaacac cgtcatcatc aaatacagag cacgacacag tgcaactaga
      901 gagtccacag atactcagct atgcagagct gctgcatgtt ttacccatcg tagcattgta
      961 tttca
//
LOCUS       KCLA01000030             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 477upu ultra-conserved element locus uce-4995,
            sequence.
ACCESSION   KCLA01000030
VERSION     KCLA01000030.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-4995"
BASE COUNT          104 a           60 c           55 g          144 t
ORIGIN      
        1 tgtcaatact tttaacctga aataaaccat gtaacaaatt catgtattct gggcagtgga
       61 aattatttcc gttaactctc ttttctgcat atcatcaatt tgctttttac tcatgtttct
      121 cctactgtcg ctgtaagctt acttgttgtt ttttctttcc ttttcttcat gctgtcgttt
      181 agagccctac agagagacaa gtatgggagt aaagctaaac attgcatatc aaatgtaatt
      241 ttttttagtt cacttttatt gcatcacata tagatgatgt agttaataaa ggaaattcat
      301 ctcacagttt tgaactcaaa agaatatgga tatacatgtg tatatatact tgtatgcgtg
      361 tat
//
LOCUS       KCLA01000031             233 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 491upu ultra-conserved element locus uce-848,
            sequence.
ACCESSION   KCLA01000031
VERSION     KCLA01000031.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 233)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 233)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="491upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>233
                     /note="ultra-conserved element locus uce-848"
BASE COUNT           82 a           31 c           34 g           86 t
ORIGIN      
        1 acttcagaat tacatttttt aaagtaaata attgttttaa atctattttg taaagatata
       61 aaaatacaat agaatttctg gagtacagat taaactattt gcactaacac acgtgatgtg
      121 catgatttaa taaaataact ttactctccc tatgcatgtt tgagttgaat gtcatttgaa
      181 aaaaagattc atgctaagtt tcttttgcgc tagatgttgc cacagttact agg
//
LOCUS       KCLA01000032             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 506upu ultra-conserved element locus uce-2746,
            sequence.
ACCESSION   KCLA01000032
VERSION     KCLA01000032.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="506upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-2746"
BASE COUNT          272 a          168 c          142 g          280 t
ORIGIN      
        1 tccatacaag cacaattccc atccatgaga agtctgtata tctaaaacaa ttcaaacaca
       61 aaaacctttg tcttggaaac gttatttgaa agcattttat aaactgatta tttcagtatc
      121 tgatttttct taacatctct ttagtcattt tacagggctt cttgcttcaa ttaatagctt
      181 ttttttatta ttgattaagg tagtcgttaa ttcatcaaca gaggacagac tgtacagtta
      241 tgccctaaag gaaagcttta aagtcgtgga acaatactat gcaaataatt tgaaaatatt
      301 tttaagcagg cattacttca gcatttagat attggctaaa gcagctttaa tatgcaagac
      361 aagacgttag gtgcttagct gatccaaatg ccagtctata gatttgaaag actaaagatc
      421 acatcactgg gaggttgaca gaagtgacac tttgcaaagt gccaatgatt tatgccaatg
      481 tcttgcttga tgatactgtt atagacagca ctgtcattac aaagtcccta acgacttcag
      541 tctacattta tggtgcacaa attataggtg agcccaaaga tcgaaacctt cctgactttt
      601 agatttcaat gaccaagtaa ttctctctag gttggtttct tgtgttgcct gatacttttc
      661 tgtttcagca ttgtagttaa attgcaacaa gggcaaaata cacactcact ataccttatc
      721 aagacttttt tagcccccat taacaaacac cctgccagat acactgaact ttttattcca
      781 gcaatgagct ggaatacagc tctggctttt ttatcaacag aaatgcttct atgaggtact
      841 gaggacctca cacaagctgc tt
//
LOCUS       KCLA01000033             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 522upu ultra-conserved element locus uce-2030,
            sequence.
ACCESSION   KCLA01000033
VERSION     KCLA01000033.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="522upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-2030"
BASE COUNT          187 a          111 c           96 g          164 t
ORIGIN      
        1 ctaaaatgaa tactaatgaa actccttagt tagcttcctt tgtgataaga ataaaaaatt
       61 ggagctatgt tcctctagaa tctcaagcaa tttttgccct ttattctgat agaaagatta
      121 ctgacagtgg agaaggagag caaagtaatt tcataaaata tctgcatttt taagaatgct
      181 tttgttgcaa aaatgttggt gtgcaatttc ttcaatctac ttttaaggct gtaaagaaaa
      241 agtacctatt tgttctgcac tgcaacaatg ccagctgcat tcaatcaact aaaaagctgc
      301 aagccataaa ccttcctcca cagctataga agaaaaaaag gcagggccat aaaaattcat
      361 caggataatg tagagatgag gcgcgtttga atcaccatcc ctgcaatcaa ccaatcactc
      421 atcctgtggc atttacagca catctcattc ccctgttcct taaggacaat tgattttcct
      481 gattccatta gcataacggc aaggaaaatg actgcagtgc aatatttctg gaaacttcca
      541 acaagtatgc tgtgtgct
//
LOCUS       KCLA01000034             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 537upu ultra-conserved element locus uce-5645,
            sequence.
ACCESSION   KCLA01000034
VERSION     KCLA01000034.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="537upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-5645"
BASE COUNT          270 a          184 c          166 g          274 t
ORIGIN      
        1 caagcaggac actcaagtac tcctcttgta taagaatcaa tcaacaataa cccaggctaa
       61 gatccacact attaatttgt acaactattt tctccagtgt tgccttctct gtggttctga
      121 accaattaaa aggctaatgc ataaacccca gcaacagatt acgaaatcag cccaaaagcc
      181 aggtgaaatc acctacagga acttagcagt ttgaccattt aggagtctga aggggtattg
      241 atttcaggtg aatattctaa agtttgcatt accctttgag aagtgctaat gtagttcttg
      301 tcactttaaa ttaactttag ataagaggga ctgacagaaa catgaagatg tgtgaactat
      361 atttgactga tattctgtca aatattgcat ggggttatga tccacaactt ttcccatctg
      421 ctgctcaaac ctgaatcctt gaatgcacaa tggattaatt accatatttg gttctgattt
      481 cacttagtag tacaaaagac tgtgaatttt aaatgtaccc tcacctgcct ttctttctaa
      541 gggtattttt ctaagggagg ggggagagat cctttagcag tttttcatat cttcttataa
      601 tgatttgcta agagcacctc ttctcaaata attagattcc cagaagttaa ccagagcact
      661 cagaatttca ttcactcctt tcctggtgag aatttctccc ccacagtaat aaaagcaatg
      721 aacgctgatg tagtatgttc cataggctgc actttataag cagatgcata attatgtgag
      781 gctttgctgt ttgctaccac tgcagaagga tacagtgtgg agcagtggag gtcaacactt
      841 tcaactgatg tttcctagaa ggcctgacac tgattcctga aaaccacctg ccca
//
LOCUS       KCLA01000035             917 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 551upu ultra-conserved element locus uce-539,
            sequence.
ACCESSION   KCLA01000035
VERSION     KCLA01000035.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="551upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>917
                     /note="ultra-conserved element locus uce-539"
BASE COUNT          294 a          175 c          145 g          303 t
ORIGIN      
        1 tctttggcag ggaacacttt tttccactga gctacaaaat tctacctaga ttctgtttat
       61 agaaatgtaa tgcactttcc ttttttcccc ccctcccaca gcaatagtaa ttttactttg
      121 atctcctagc agccaaacta ttaaatgtaa gcatgctcat aagcaaggta caaggcaggc
      181 acagcctatg atttctagta gaaggtcata acccagattt ttttttaaat aactattaca
      241 atgaggaaca gagtatagcc acaaaaggaa tagttataat ttatgcctga cttacttcag
      301 cagaatatag tttatttata aactgcttat ggcaaactct gtatgcccct gttctatgca
      361 tgtgctgaac tgtcttctgg taaattattt aaattacacc tagcagtaat tcctgaggac
      421 tttcatactt cattttctct attaatgtaa cagggaaaag ctgctttgca aggattgctc
      481 taaattccca gagtgtgagt tccaaactct gtatgtgttg cattatgcct gtcaaaaaac
      541 ttgtcttctc ctgaaattta ttactgaagt ctctccacta gaactactca ttgaagcctt
      601 acggaaagct catacatgat ttaagaagct aacagcactg aaagaaatag gtcaggtaaa
      661 aaaaccctga atttaagcta ccttcactta ttacttatgc aagattatgc ataatttagc
      721 acactgctga atatgcaagg gcagaataat tgtttaccaa aatatttact ctgtgttcat
      781 acctgtgttt tagtgagata aggtgatttc tcagcccttg ctaatcactt tagaattaga
      841 aaaggattaa ataagttttt gattatgctg ataactgcat gacattatat gtaaacaaaa
      901 ctcatgttta acaacct
//
LOCUS       KCLA01000036             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 566upu ultra-conserved element locus uce-987,
            sequence.
ACCESSION   KCLA01000036
VERSION     KCLA01000036.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="566upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-987"
BASE COUNT          332 a          176 c          173 g          311 t
ORIGIN      
        1 ttatgtgaac aaggaaagca taagaaaagc atttcattta aaggtgctgt gagagatgaa
       61 actctggtct gtaaaattcc catacttctt ctgcatgaac caccaaaaat gacttgcaaa
      121 ataaaatgtg ttcttttact gctttgcgta ttttgggcca ttcaaaagca caaaaacccc
      181 acacttcatg gtgagaccta catacaagat gttaaaaagt ccactaactt ttactaaatg
      241 ttacaatcaa tgatgtaact tatgtaagta gggttgcttt gtcatatatt gatagttacc
      301 tcactttcac atccacatta acttgatttt aaatgcaatt aatacatata gtcaaggaag
      361 actaatggac tacattctgc acttaacctg gtggacattt tcaaatggca caagtgacca
      421 gtgcaaacct attttgcatt gtaaacgact aaataaatct taatggatta agaatgatca
      481 gctatcaaca cacaagggaa attaagtgct gaaatgccta cattgattat tttaaattat
      541 tagccttact ctgttcttga atttgtatgc ttttagtgag ctttaacaca tttacaagac
      601 ttattgacta taattacaag agaattcaag taatggacac atcaattata agcaacatgt
      661 cttgaccaga cagttgcata aagaattcta aagagagctc cattagcatc ctccccctta
      721 gttttattca gttttatctg ccgtaagagg gcatattaag ggcttataca gctgttctga
      781 ccatgtgaac atgagcatcc ctctaaagac tgaacacgat gttccaaatc ggatattagc
      841 tgcagcaata tggagaacta cgttattgac aggctagaag taatgctggg ggtatgaagt
      901 atgtgagtta ctggtataca tgaatcctgc cgttattgta caatactttg aaaggtttga
      961 aatacagtgt ctgtgttccc caagattaat tt
//
LOCUS       KCLA01000037             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 582upu ultra-conserved element locus uce-1232,
            sequence.
ACCESSION   KCLA01000037
VERSION     KCLA01000037.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="582upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-1232"
BASE COUNT          239 a          174 c          152 g          252 t
ORIGIN      
        1 ttactgcgtt cactgctgga gcggacatca agccaggaaa atccaactcc cgatgcaaaa
       61 ggatttcccc atccaggcac tgccaaaaat acataattct ttttttgtac tctgcagttt
      121 gttttactta gggaaacggc ctggtcatac cctgcagcat gcattcatta cagtgatctt
      181 tgactggcag atgcagagta ataagatgca tattttagtg cttattataa taccctgtcc
      241 aaaaacaact tgacaaattt gtgatttcga cagtatctca ttttgctggc tgcagtgctc
      301 tgtgattgct tggtccacgt ggcttccaga ttatgcatac caccaatact gctcattaaa
      361 atggccacag ttcaccagtt tcggtagctt ggaacgaact tggaatgaat tattatacaa
      421 caaagaggct gctgtcatgc agaacaaaag acaagcaaaa gagagctttg gcttaatgag
      481 gctaagtgag tgtctcccct gcatcaccag ctacttgacg gcctttgagc atggattttt
      541 ttctccacag gccaaaacct ttggtctatt attttgtgtt tatgcacctt gaggctaata
      601 tacattttaa tatgctgcac atggagaaaa aaatcagcca ttagattaga acatgtgcac
      661 tccctgttaa gttaatgaca gccgaacata gagataaatt taggttttca tatttaatta
      721 tagcacagca cagtgcgttt agcaaggata aattgcacta ttattatgct tcattttttt
      781 tgacatcttt tcaaattaac catacgcact taccccc
//
LOCUS       KCLA01000038             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 598upu ultra-conserved element locus uce-7144,
            sequence.
ACCESSION   KCLA01000038
VERSION     KCLA01000038.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="598upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-7144"
BASE COUNT          192 a          233 c          169 g          223 t
ORIGIN      
        1 ctgcagattc cccccacagt gatcttcagc tcagcaatgt gttgtgttgc cacaggcatc
       61 aggtctgcag agcaaccacc atacacaggt gctttattca ctgaatgtct gatcgaaata
      121 cagccagcag aagaacaggt acttgaaacc agctcaggaa ggggtatcat gctctttgag
      181 ctataaacca gccctccggt agctatctgc tgttctgaac cctcatacca tgcttttcat
      241 tcagtgggtg cccaggagcc tctgcccaga cacatacagc agagagcatc cctctgtacc
      301 cgtttcctgc ctgctccacg actacctccc aggattgctc cttgctctct gcaggttctc
      361 cttacgtctg ggtcctggca agagtgcgag aagcaaagca gaaaagtttg catccctggg
      421 taggctgttc tatagcatct gtatgtgcag gaatcagctc caattaatcc accctcagct
      481 tggcccgccc gcttcattac ctccccttga tgagaaccat cagtggggcc tgtatgattt
      541 tgctaattag cctcagttcg tttatcattt ccattttctc ccagagacgc ttggcttgct
      601 gggcgacagc ttcatctcct gctgaaacaa tgcagcccct tctgtgcctg tctcacttag
      661 cgctgtcacc gcagccatta tgaaattggg gtttcattta cacactaatt aaacattaca
      721 gcttgttcac aattacaaca tggggatgag gaggtaacta attacttaag aaatgagcta
      781 acatttatct ctgattcctc agcctgccac cctcctc
//
LOCUS       KCLA01000039             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 614upu ultra-conserved element locus uce-3482,
            sequence.
ACCESSION   KCLA01000039
VERSION     KCLA01000039.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-3482"
BASE COUNT          125 a          115 c          157 g           74 t
ORIGIN      
        1 gcggtactta cggcgatgcc gtggccgaag ccggagcccg gctgggggct ggcggcgctt
       61 atgtagttac cgacgccgga gtcctggctg gccgtgccgt agagatccgc gacgggccct
      121 gggctgttgg ccccggggaa acctccgggt cgggctgggt tggagcctgc cggggaagcg
      181 ggtgcgccaa aattcggttg agcactgtag ctattcaaga ctggtgtgca gagaataaag
      241 ctgggtatga gggcggacgc cgggcatgca ccgttcgtta caaagccaaa caccagaata
      301 aacagcctgg gcccaacttc taacacttaa ccaaggccat gcgataggag agcgagtact
      361 ggaagagaag tcagcccgta ctactacgaa gcttagagct ccaaaagaag aggtatggag
      421 ataataaaag aataaaaacc aacggaaccc aaagggaaaa cgaaacgggg g
//
LOCUS       KCLA01000040             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 628upu ultra-conserved element locus uce-6373,
            sequence.
ACCESSION   KCLA01000040
VERSION     KCLA01000040.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="628upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-6373"
BASE COUNT          225 a          205 c          154 g          188 t
ORIGIN      
        1 ctcgaattcc aggcacaggg ggaggctttg acactgctgt ttgttttctt attggagaag
       61 ttcaagagaa gctcaaggct taaaagcaaa cccttgaaag caaagcattc ctaatcacat
      121 aaaagtgtct gcgcaggcca cggctgaaga gggggcttgt gactttaatc tttgcatatc
      181 cctttctttc ttcaagcatc tctccctctc tgagacagac acacgcacac actctcgcac
      241 acacaaaact ctcctcaacg ccaatagtat aatgctctag gagaggaaca cagaggaaga
      301 ggaggaggag gaagccggcc cgcctgcctg cccccatgct gagcccgagc agactttgtg
      361 agaaagcttc tctccatctg cagcccagcc tggtgggagt caattaattc tgaataacct
      421 aaaccgacag aggtatttgc attcacaacc tgactgatga ccgtataaaa ttgatttatg
      481 aattgaagta ctttccctcc ccttatcctc gattcaagcc ataattgatt atatgtgctg
      541 cagcgaaatt aaagaaaaga aaattaaaaa aagaaaagaa aaaagggagg ccccacagac
      601 gctgctctat attctcaagg tttcccggga ttagctgatc tattcatcac ttattttttt
      661 aaatttaaaa agttgcttcc tttcccctct ccaccaactc accccccacc tcccaacccc
      721 tcatcaccac ctcagcccag gcagcagcac agcgggttgt accttgggag ag
//
LOCUS       KCLA01000041             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 642upu ultra-conserved element locus uce-6163,
            sequence.
ACCESSION   KCLA01000041
VERSION     KCLA01000041.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="642upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-6163"
BASE COUNT          215 a          123 c          112 g          178 t
ORIGIN      
        1 tttaacacca tctggaagaa aagatccctt cacgactttc tcacaccgtc agacaaaact
       61 agtgtctctt gttctgagcc cttgtctatg aggccataca atactgagtc attatacttt
      121 tgctgagaga aaatttgaga acacaatact ggcaaccagt gaatgaccaa gtttcattgt
      181 gcccgcttaa gtcgattgaa atctacgtct agagctatga atggcagcat tgttttcctc
      241 accggggctg tactaaatgt cagcacagtg taaagaaaaa cttgaagtct gcaaataact
      301 taccagatct caattataat attttcccac actagaacta atatcattgc tagggcccac
      361 aatgcatgaa ataaaaaaaa aaaagaaaaa aaaaaagagt tcatttacaa gttattttag
      421 ctagacaaac attttaattt tctgatggaa acagtatgta gagctgagaa gttcaagtta
      481 tcaaactgct tcttgtgtaa ttaagaaaat caactgtgca aacacacctg ttttcggcaa
      541 ctactgcagt catccagctt gggactgata aaatgttggt aagtgtgttc tacaggacac
      601 aagttcagct tctgagtccc tgagaaat
//
LOCUS       KCLA01000042            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 657upu ultra-conserved element locus uce-4107,
            sequence.
ACCESSION   KCLA01000042
VERSION     KCLA01000042.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="657upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-4107"
BASE COUNT          228 a          305 c          230 g          252 t
ORIGIN      
        1 agttgtattg ccagttgcac ggtaatccct gctcttctcc aaaccccagc tcccgacggc
       61 gtgtgccggg gtgggaatct cagctgtgac ctgagcctgt agcaaaaccc cagaaccgct
      121 gaaccctcaa agctcagaga ccagaaggca aacggactcc ggatccaact ctctcttcag
      181 ggctttcctt gagtttttga gatttttagg gttttttttt ccagcctgac tccagccctt
      241 tgaccgcttc aggttggcac tgctgctctc tgcatcagca tcggtggagt tagaccaggg
      301 atgagtttgg cccagcgctt gtagaagact cttgtatgac tctgttcctt gcaatgtgtg
      361 aattgatgtg atctgctgtt ctcttggggg ccaagaggag ggggatttga tagcgaagtg
      421 aaattctatc atcacttggt acaaaacgtg gtatttacac aattgttttc ccccatcttt
      481 tgttataatt ttttaggtgc ttcagagctg ggcccatttt cagatcccag gcagttcaca
      541 agcatttcat ccctcactga gagccgcttc tccaacccac gaatgcacta tccagccacc
      601 tttacctata caccgccagt cacctcaggc atgtcactgg gtatgtccgc aaccactcac
      661 taccacacct acctaccacc accctacccc ggctcttccc aaaaccaaag tggacctttc
      721 cagaccagca gcactccata tctctactat ggcacttcat caggatcata ccagttcccc
      781 atggtgccgg gaggggaccg ctccccttcc aggatgctcc cgccgtgcac caccacatcc
      841 aacggcagca cgttgctaaa ccctaactta cccaaccaga gtgacggggt ggaggcagat
      901 ggcagccaca gcagctcccc aaccgtcttg aattctagtg gcaggatgga tgagtccgtt
      961 tggaggccgt actgagattg cttccgtagc cggcctgacc tccgagagcc aaaaa
//
LOCUS       KCLA01000043             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 672upu ultra-conserved element locus uce-490,
            sequence.
ACCESSION   KCLA01000043
VERSION     KCLA01000043.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="672upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-490"
BASE COUNT          155 a          134 c          144 g          133 t
ORIGIN      
        1 ttccgatgat ctctaccacc atttgcatgc tgagagcagg ttgaaattcc tacctgcaga
       61 aacagaggcg aagaactgaa tcctaaacca atgccaaccc caaacatcct ctttatccgc
      121 agcccccctc gcttcccctg ctcccaaacc ggacaaaaga ggctggaaat tcaggccgag
      181 caaaatccaa ttggagctca cttgagcgct gttttgatgt gagattcaaa gctgctgcaa
      241 atgtatttta tctcctccac ttgctgatct cctgcttgta aatcctgttg aaggagaata
      301 aaaatgagcg cagcctgatg ggaatttgat gtctgaagtt caaagcagtt tgcacatcag
      361 agcgaacgtc aatcaaatga acatcttgca agccaggcag ggagcgcgtt tttccatggg
      421 gaggagatca aagtgggagt cgcagctctg tttgctcccc cgggatgcag tttcgatcgg
      481 tggttcatta aagggaatcc agaaggaagg gccttgcaga gaaccaggga aaagggagga
      541 gtgggcctgg cttgaagctg gatttt
//
LOCUS       KCLA01000044             288 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 686upu ultra-conserved element locus uce-6207,
            sequence.
ACCESSION   KCLA01000044
VERSION     KCLA01000044.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 288)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 288)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..288
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="686upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>288
                     /note="ultra-conserved element locus uce-6207"
BASE COUNT           98 a           54 c           78 g           58 t
ORIGIN      
        1 ggagagagag agagagagag agcgcgctcg cggtgggcag acagacacac gcacgcgcca
       61 ggtcaaagaa ctctgaaaca gtgcaagaat tttcccaaaa tgattggatc atcattacca
      121 aaaaactcgc cataacaaca ccaagaaaca aagaaatgtt taagccacac tgttggactg
      181 ggatttttcc tgcttttttt tttctttaaa tgtttgccac acagagagaa aaagggttta
      241 agtgggaaag ggagagggat ggacaggctc acggatgtga gcaggaag
//
LOCUS       KCLA01000045             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 700upu ultra-conserved element locus uce-1385,
            sequence.
ACCESSION   KCLA01000045
VERSION     KCLA01000045.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="700upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-1385"
BASE COUNT          269 a          141 c          155 g          270 t
ORIGIN      
        1 aacaaacgca aggagttact gtctctgagg ccgccaagca cttgaattgt tttgaaactt
       61 tttttacctg tgcagcattg taagagatgt ttgaaaagtt acacacttag atttgtttgg
      121 ttttctttta aagtatcaca ttttacagtt agagtagctg cttagggctt ttcaattgtg
      181 tggatctata accaagaaga ttaactggac agaagagtta tgcatgtgat acgccagcac
      241 tgatttgtaa agcatatcgt aatatcagca tgctattggc ttaaagtgaa cgagttgctg
      301 ttttggcttt tctttctaga gcatgagctt aaacacagca gtgataaatg atgatatgca
      361 ttgtctaaca cttgctttta tataaatagc tccagaagat tgcttaaatg ataatcgaaa
      421 atatgaaata gggtggcctt catatcacaa ggccaagggt ctacaaatgg aaaaactgaa
      481 ataatgaaat atttccaagg caacagactg tcaacaagaa cagtaatgca tgggcatatc
      541 atagagctac cagagaggat attagatctt atagctctag agccaggagt tataatgacc
      601 tttattaaat agagccctcc cacattacaa caatctttcc gatttctgat ttatggatta
      661 gcagtcatgc tactcttcat aatttgaaat attctcccac catatttgat ttgctgcatt
      721 tttctccact ggaatcatac attatttaga gcttacatgg gagtattgat caacaaaagt
      781 tatattacat attttcagta actaatggga ttccaaataa caaggttttg tctgc
//
LOCUS       KCLA01000046             905 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 716upu ultra-conserved element locus uce-805,
            sequence.
ACCESSION   KCLA01000046
VERSION     KCLA01000046.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="716upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>905
                     /note="ultra-conserved element locus uce-805"
BASE COUNT          272 a          185 c          171 g          277 t
ORIGIN      
        1 agcaagcagc agaaaatgaa cgttaagaaa ttttaagtac agcagtgtga aaggatagga
       61 acaggggttt agatttcatt agttttgtcg gtgagaaata aagtccttgc tcacaaaaag
      121 gatgcaggcc gaaatcttca agaatacgtt aacaccactg gcttgtaatg gatgcaatca
      181 cacgattact atctaaattt ttgtttattt ttcaacagat tggtgtctgc gaatcatgct
      241 gtcttacagt gccgttcctc tgtaacctta accattattc ccactgtgta aagtgaggca
      301 caaatttaag gtgacaaagc accagttggc tgatgtgaag tatgctacga aagcagaaac
      361 ctcagaaagc ttcacagcca ttatgaaata actgacctat atgaaactgc taccatggtt
      421 cacaaattta ttgtcaggtt ccagcctcta gctgttctct gattgttcta aatacttgac
      481 aaactgaagc cttttcactt tctgttgaaa ttgcctcatc tccctgtcag agcgccatgg
      541 gggactccat tacttttctg acttctttcc cctactgaca agtcatttag ctggcttctt
      601 gttgtgaagg ctgtccatgt caaattagcc agggccccta ttgtccttat taccactcga
      661 aaagccatca tgagtaatgc tacggggtcc ctcagttgtc atcatttgtc agaaagaaag
      721 ggagtgtggt tacatatagc tgacaggtaa tttcagtgtc tacaattacc ccaattagtc
      781 ttgtcataaa caattcgata aatgcacacc aatacaaaca gataaacaca ccaaggtttc
      841 tcactattaa tgccctgtaa tggataaatc agtgatataa tgctggattt tatttatttt
      901 tttaa
//
LOCUS       KCLA01000047             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 731upu ultra-conserved element locus uce-3484,
            sequence.
ACCESSION   KCLA01000047
VERSION     KCLA01000047.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="731upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-3484"
BASE COUNT          230 a          133 c          138 g          201 t
ORIGIN      
        1 acgtaggacc cacaaattaa attgtgtttt aaaaatactt gcttttgtca agatggtaat
       61 tctgcattta aaaaaacctg atgtgttctt tctgacacag aaatcttgtg tttcagtgcc
      121 tgactaatct ctgccttgct gatgcttttg aacgagcttt gtatgtgaaa gctccactaa
      181 tccgtgtgct tactgtttga atgtttgcta caggaagcga gcagctgcaa agcatctaat
      241 agagcgctac taccaccagt taactgaggg ctgtggaaat gaagcctgca cgaatgaatt
      301 ttgtgcttcc tgtccaactt ttctccgtat ggataacaat gcagcagcca ttaaggccct
      361 cgagctgtat aagattaatg caaaactctg tgatcctcat ccctccaaga aaggaacaag
      421 ctcagcttac ctagaaaaca attccaaagg tgcccgtaac aattcctgtg ctgatagaaa
      481 aacaaacaag aaggaaatgc aaggcccaag agatgacttt aaaggtaaga tgttatttta
      541 gaatggtact aaaagaaaac atatttaata tgcacaaata caaggccaca gaattcactg
      601 tggtggtatt ctgctggttt cttacataaa ataaaatgat gagcaatcag gtattttact
      661 atggattctg aaaaaacgat gagttaatgc tgaacactga tt
//
LOCUS       KCLA01000048             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 761upu ultra-conserved element locus uce-2566,
            sequence.
ACCESSION   KCLA01000048
VERSION     KCLA01000048.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="761upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-2566"
BASE COUNT          192 a          181 c          164 g          222 t
ORIGIN      
        1 taccttggct aaagccatgc caagtgtctt caacgagaag cgcttgcagt atatctctct
       61 ggccatgcaa ggttaatttt attgtgcctc agagggattc tgtaattgat gtgcaagcat
      121 gcttttaggc catgcatgag tgtcaatgca aagtaggatg ctccccatta acttgctgag
      181 ctttccctct ccctcactgt acctcaaggt ttgctagtca aggcaaccag ggcgtcccag
      241 cggatgcatt ttccctggtg ctccatactt ttcccagcat ttcccaacta atagctggga
      301 agagaggagc tgctatgatc tgtaaggttt gtttcttgac aaatgtccca ttttcacagg
      361 cagttgaacc gaactgcagc ttgtgctcca ttcaaacatg tcaataaaca ttattgcaaa
      421 gatgtacaag taataatggg aatgtataaa gctcacctct attgcttctt gccatgaatt
      481 tactcactgc tctaaacagc ctttattcct ccaggggaaa accttgggat gttgccttta
      541 ctggcatgct gatatcccca cttgagaccc ttgctgcctt ctctgcctcc ccaccatgag
      601 tgcaggggat gaaaacagag tagcagaagt atgaacatat ctcaagttcc agacaggctc
      661 agttaaaagc tgaagaggtg aagttgcctt tctcggaata aggtgctgtg tatgttattg
      721 cccattcttt gcttgatcac acaatgccag ggtgcattc
//
LOCUS       KCLA01000049             973 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 791upu ultra-conserved element locus uce-1616,
            sequence.
ACCESSION   KCLA01000049
VERSION     KCLA01000049.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="791upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>973
                     /note="ultra-conserved element locus uce-1616"
BASE COUNT          317 a          203 c          162 g          291 t
ORIGIN      
        1 aaatacagac cccaaagtca tagctcaggg tattcactct ctcttgaaca tgggattgat
       61 ccgaacacaa ttactttact ctttttagct gtttgacttt gagctagtca attagcacac
      121 aaatataata ccacacgatc tgttgaatcc aacactgatt tttctatcaa agatctaaag
      181 caaatttatt ggctgtcatt taatagcttt cagccattgg aaacatcaca tgtgaaagct
      241 caacttcatt ttctgatggt cacttaaaac cttaatttac tctataaaac tctctcaagc
      301 cttagtttca aaaccctcaa attagcaaac aagtcacccc ataatatatg ctcaacacat
      361 aggtcttctc tgcaaagcag ggaccttcaa gtgcttcagc tgccatagaa gtcattgagc
      421 catggccaat ataagctaat ttgaataatc aatatgacaa ccttattttt ctaatgcaaa
      481 caggattgat acagtaaggt gtctcactgc cacatcacag tcatggcctc ttttaacccc
      541 taattagatt taggcgatta tccctgctct tccttacaag tgtacagcct ggataaggga
      601 tgacaaaagc tatctgccac ttcctcagcc tttgcagact gcaggttatc cagggagata
      661 caggggaaga tcagcaaaca attgttattc atatcatcta cagttttaag atagtcacag
      721 ttttccattc aggctaatga aaaatagccc agagcattag gtaaatgcaa aacacttaag
      781 aacataaggg ttacgcagat ggaaattcaa ggtgatgtta gggaattaag cttaattcaa
      841 aatggttatc aaaagaaaac tatctagcaa cccatttttt tcccagacag gaaacaagga
      901 cttttccatc gatttgtctt cattgttgac ttgggtgtaa cactgagtgt tttacatgga
      961 tattattagg gaa
//
LOCUS       KCLA01000050             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 807upu ultra-conserved element locus uce-965,
            sequence.
ACCESSION   KCLA01000050
VERSION     KCLA01000050.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="807upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-965"
BASE COUNT          229 a          105 c          109 g          205 t
ORIGIN      
        1 tgattaatgc atagaaagga cctcgtgttt ttgaattaac agatttaagc gtacataata
       61 aattgggaat tcttacaaat agataagaag gttttaactg cactatggac aaatacgaat
      121 ataataagct tgaaacaata catttaagaa gaagaaaaac aaagatgtaa ggtcagacaa
      181 tatctcaaat aacatttgga aaatgctgcc aattgtttgg ataactgtac aatgccaaag
      241 cctcttataa cattgttaag tctttattca gtaatacatt atcatgcata tttcatagca
      301 gggattacta agacagaatt gtgtgtcatt tttgttgtat gtctttataa ttacaccttg
      361 aagccacaac tacatttttt ttttactaca tattcatgaa aagcggactt gtaatttgat
      421 aaagggtagc ttgtgttctc aactccattc aaacagcatc atgaagcaga attaaagtag
      481 gcatctgtgt tctcccggca ttaatctctt caagcacatt ccagctgcta tgatgtgcaa
      541 gagggagata agtcctaaac ggactaaagc taagcaagcc agacaactct attattggct
      601 tcataattgc ttaattaaac ttttgtcact aatcattatg agggcaat
//
LOCUS       KCLA01000051             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 822upu ultra-conserved element locus uce-7854,
            sequence.
ACCESSION   KCLA01000051
VERSION     KCLA01000051.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="822upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-7854"
BASE COUNT          207 a          227 c          250 g          254 t
ORIGIN      
        1 attgtaaaga agatacttat tacacagggt catcagtagt gacttctgag cctcctccat
       61 ggtgctcagt ctgtggcttt tcaatgagga aagcttttaa tttaagctct ccttaggctg
      121 aatgccagca tggggcctgg cttggctgcc ctggtgatac ttggggcaag tgtgccacag
      181 cactaactgg ggtaattcgt actaaattct ctttggaaac tccactgtat ttatgggtgg
      241 ggaggccggg aggatgcctg ccctcccacc ttcccccatg ttgtctcaaa aggccctggt
      301 gcatctttga ttaggtgtgg gtcaaaagaa tttccacatc gtgaccttaa taactgcggt
      361 tgattggcag gcggtctgtg gagaaggagc agcctgtccc tttcatctcc cttggtgctg
      421 tgctgggaca atgggccagc atattttcct tgttgttcct catttgaaaa gggtctggta
      481 tctctactag gtacctgtga catgggggtc ttgattgggg tctcataaag ggccctgtca
      541 gtgtgtccaa aggccaggaa tacaaaggcg atcagtgggt gggggtctca gctgaccact
      601 gaagaaggga ggggagggtc ctggaagcag tggagggaga agcaacccct gatgggagac
      661 cttaaagggg ggaggggggg aggaggcagc ccatttttgt cccaaactca tcaagcacat
      721 ctgcagaatt gtcccagccg ctgcctccca gtttcaaaag aaaatgatcg tttgataaac
      781 cgtcctgatt caccactttc tcacaaggga gggagaccca cctttgacct ctatgatttc
      841 acattgggcc cagctccctg ccatcaaatt gctggtgaaa ctttgaaatg catcccttgc
      901 gctccctcta cttctccctc tttcccttta ctcttctt
//
LOCUS       KCLA01000052             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 837upu ultra-conserved element locus uce-7641,
            sequence.
ACCESSION   KCLA01000052
VERSION     KCLA01000052.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="837upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-7641"
BASE COUNT          142 a           82 c           93 g          138 t
ORIGIN      
        1 taatgaaatt taaaataccg tccacttaat tttgattata ttctctgttt ggccaaaagt
       61 acattttttg tagcactact tctggggagc taatgagggg aaaaacctcc ttctgaaaaa
      121 tggagtcaca gctgtactag cagataaggc tgacattcag ttcttagaaa taagcaatca
      181 atggtgaata tatcaggtga gttcatttct cttgcttcac tttaatagct tataaagaag
      241 attgattaag ttcttgtctg atagatcaat aatggaatga aactgagctc tccctgcttc
      301 aagcatgggt tcctcatgtg ctggggaatg tagaacctaa agagggatag ctttaacttg
      361 gaaaaaaatc ccaatcaccg agattctaac aggctcgttg gcaccatttt acctgtgcag
      421 ctcacgaagc aatagccata tgatgcaggt gatgt
//
LOCUS       KCLA01000053             904 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 853upu ultra-conserved element locus uce-7783,
            sequence.
ACCESSION   KCLA01000053
VERSION     KCLA01000053.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 904)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 904)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="853upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>904
                     /note="ultra-conserved element locus uce-7783"
BASE COUNT          211 a          175 c          223 g          295 t
ORIGIN      
        1 tgtcaagcaa tacagatgag ctttgtaacg ccgccagagt agatgctgct ggggcttcac
       61 agatcgattc ccattgaaga ggagaggaca gcgtgtgccg tttgttgcct tccccatggt
      121 gggcattcct gtttctttgg cttctcttgt agcagttgcc cacaaaacgg taccgtgacg
      181 tgctccctgt ttgatgtgct ctcgtggtta agctcagtct gttactttct ctgacaatat
      241 ataatcgcat tgctgttttc ttgtttcttt caagggcatg gaaattcagc tgtggtcagt
      301 aacgacacgt atgtgtttct cttttagtgg aggcaatagt ggagtttgac tacaaagctc
      361 aacatgatga tgagctgacg atcactgtag gtgacatcat caccaatatc aagaaagatg
      421 atggaggctg gtgggaagga cagctcaaag gcagaagagg tttgttccct gacaactttg
      481 taagagtgag tacaaagtgg acctgttctt gtgttgtgtg tctatgttct gtgttctgtg
      541 ctgtccgggc taagtacaag cctttttatc ataatatttc ttatctccac aaccatgata
      601 cattctgtgt tctgttgagg ctgtgttgga aagaaaagat catgtccttt gcaaagacaa
      661 ggtagttttg atagcttgaa aagaaaagta gctgcccctc catctctctg ctgttcagag
      721 attgtgtttg gctctgtggt ctgggcacaa ggtgattatt gtagaacaac gtgagtcatg
      781 gatttgcaat attttctctt ctctgcactg ctgcttctct tgagtgcttt ctgaggtttt
      841 gtagaagcct tttgtgaaca cttattcctg gctgaactag ctaagaacag tgacaatgga
      901 tttt
//
LOCUS       KCLA01000054             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 867upu ultra-conserved element locus uce-7583,
            sequence.
ACCESSION   KCLA01000054
VERSION     KCLA01000054.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="867upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-7583"
BASE COUNT          263 a          224 c          188 g          273 t
ORIGIN      
        1 aaagcgagtt aagtaaaact attattcact tgggacaacc tgtgtgggct gacgggagcc
       61 ctgacagcca aaacgctgtt tcccagcagg aaaagccctc ctgcacaggt aggatttgag
      121 ctgcaagacc ttaaaccaaa cttagtgcag caagagaagt actgcataca ttgcatagca
      181 tctgagctct ctccaccacc cgaagatcct cggtacggtg aaacgctgcg ttgccagcga
      241 cactccctgt gctgtctgtc tcccagggga cagggactag gcctagccaa aataatcagg
      301 tcccagctcg tagcatctcg ccctcctttc tgcaccagaa caccattatg ctggtatgca
      361 ttgctgagcc tctccatatc acacttacaa ttaagttcaa cttctgaaag ctctacctgt
      421 aattggagcc agctgcaacc tttctgacac acactaattg ccagtaatga tttaagtgca
      481 gtaaattcac atgctgcaat tgttttaaat aaaggaatct ctggcagctt ttccctgaga
      541 aaaatctgtt aatctttgtt gctgacttat caaaccctcc agtcacctgt ttgccatcat
      601 tttcatgagc cgataacgtg tttattagag ccataatatg caggtggagg gtaaaggtct
      661 catttagggg agtacgaatc ctgtgtatct gcacagcaaa gcctggtttc accgtttgcc
      721 gtgcctcaga aaagagcaag tttaaaatag catcttttat tcttttcaaa tggaatgttc
      781 gttcttttaa gctcaagaca tatctcaaaa tatcatttgc atgagcaaga caggttggtt
      841 tttgttaatc ccgagatatc atcatttccc atggtgaatg catccagcct tggctaattt
      901 cagcttaatt gtgctccatt ttaattattt ttcatatata aaagcaag
//
LOCUS       KCLA01000055             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 882upu ultra-conserved element locus uce-849,
            sequence.
ACCESSION   KCLA01000055
VERSION     KCLA01000055.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="882upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-849"
BASE COUNT          216 a          146 c          167 g          190 t
ORIGIN      
        1 agattggaga agtaagcatg ggcgcgtagg atggacacga tggaagtgct ttccttctgc
       61 aaatgtcctt ctgctccgtc tcgtggcaat acgtgtgcgc agtggccatt tctggacgag
      121 ttgaaaacaa acatgaggca aagtaactgg aagaaaagat gccggatcct caagagggca
      181 gcgaggagaa ggccacgggg atatcttacc aaaaaaaaaa ttagaaaatt caaatatctc
      241 tccccccatc ctcacacaaa ccacccaccc tcaccgtgtt ctgtccagaa gaaaaatccc
      301 tcagccgcaa tggttgtttt tattaaattc tcctcaataa aaagctcagg caggatttat
      361 taggtactca gggcggacgt ttagtatttc gccagttatt aagtgaaaat caatagaaag
      421 caaagaaaat ggaagtcact gcactgttag cacgctgttg tcgcccagat attatgtcgg
      481 ctgtcttgta gattcatgac agacgaaagc ggccgggaga gaactctttc tgcttacatt
      541 gcaggagcca aagtggggtt attcattaga tcaggcagct ggccagatgg atttccagtt
      601 cagttttacc atttatctta aaaacgcctg tatcgagtga gaaagaacac tgatattatg
      661 tgatatcgat ggcagcttta tgtatctaaa tcaggattta ttgttatttt gttctgaag
//
LOCUS       KCLA01000056             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 898upu ultra-conserved element locus uce-3929,
            sequence.
ACCESSION   KCLA01000056
VERSION     KCLA01000056.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="898upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-3929"
BASE COUNT          183 a          126 c          127 g          193 t
ORIGIN      
        1 tttccacggt cattctgcta aggcagatta ttcatgctta cttgattcag gtaggctttt
       61 tgcaagcttc cccgctaagc ctgggaatgc agaacactga ggcctattca tgggcttctg
      121 acatagcccg agcttttatt gcatggtggt ttattatagc caaatcctag tctccaccca
      181 gtttgtaggc actgtgctta ttcttttgaa tcaagagagg ttatcaccta ccttaatcca
      241 tgcagcaggg tggattaagg acaccaatgt gcctcaagat tctcaaagag gatcctggaa
      301 acttcttgtt tcttcttttt tgctgtctcc actaaactcc attgggcctc agtaaggatt
      361 tgcatctgaa atgggcaacc tggagctttt ctcaatgaag acatcagatc aaagttcagt
      421 tagtcaaggc ctttctaaaa cattaagggg gcttggaagt acacaataaa aagatgagct
      481 ctggcagaga ttgcagtaaa aacatttgga tcggtaatcc ggataaagaa tagattatag
      541 gccaaagaac agcccttgtt taaattgctt tcagaatccc agttttaaat aaagctatac
      601 tttactataa aaatatttag attttgaaa
//
LOCUS       KCLA01000057            1099 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 914upu ultra-conserved element locus uce-6242,
            sequence.
ACCESSION   KCLA01000057
VERSION     KCLA01000057.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="914upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1099
                     /note="ultra-conserved element locus uce-6242"
BASE COUNT          238 a          304 c          322 g          235 t
ORIGIN      
        1 gggggattat gctgctacct cctgaaggag ctgcttttct gcctggtttc acttggtttt
       61 cttcagtagc tacctgcccc cactcctgct ctttgcttcc cactttctga cctttcaggc
      121 ttgttctgcc caaaagtagt cactggcatc ttggtgctgg actgtcctgt ccttctctag
      181 gactgagagg cagaggggtg gattgtgtga ggagtggatt gatgggggaa caggcaatgg
      241 gggacgtccc tccccgcctc agtggacctc aggcaactgt gctggcaaaa cgaaggggac
      301 agtaattcta caccttcggg gacagccccg aggccacgga tgctggagct gggctgcccc
      361 aagaggcagc tgccttgcct gggctgccct cgccagcagg gcaaagcaag tggctcgcta
      421 tgactgctgc atgaagaaag ggtttctgct tttccttaat tctggcctct ctttatcttt
      481 gctgttttca gttcaagatg gctttcccat gcccaggcgc ttttctaaac ccgaatacca
      541 acaattcttt ttagggatgc acaaaaagtc tctggaggca gcggctgagg cggggaggaa
      601 gacagaggtg gagtgccagg ccctgcccaa gcttgacaag ggtgacaagg aggagagggg
      661 ccccgatccc aaaaccacca tttctcagga ggaactgaga gaaaacagca ttgctgccct
      721 cagggccaaa gctcaggagc acagcaccaa agtcctgggg accatcgtgg gggataaccc
      781 agccccgggc aggaagctgg agacagcaga ggaggcagcg gtggtggagg acgagagaca
      841 gacagagaag ctgaactcat cacagaagga ggagaagctg atctagaggc aaagaggtgt
      901 cagaagccag ccctgacaga cactgtgtct tccgggggct ctatttcccc tcagactgcc
      961 agggtcccca gctgcccctg ctagaagagc agggtctcag tctctggttc tgggactgcc
     1021 cagcagaggt gccccacacg tgcacgcctc gagcatgtcc ctgccccttg ctcttcttcc
     1081 ctaccaggct ttcctcaac
//
LOCUS       KCLA01000058            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 930upu ultra-conserved element locus uce-6363,
            sequence.
ACCESSION   KCLA01000058
VERSION     KCLA01000058.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="930upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-6363"
BASE COUNT          285 a          218 c          225 g          345 t
ORIGIN      
        1 aggcaataaa gtgagaactg tgcggcacaa gtagacatat aatgaattgc tacacaagtt
       61 gctacacaag tgaagaaaat tgccccaata ttttcctctg acatctccta gatggtggca
      121 gcaagtctca ctggaacaga gggggggagt gtgcagggaa tttggtattc ccccatgctg
      181 cgaggttaat gtgctgaaat aaacagggta tgaaaatgta actttttaca caagctgtcg
      241 aatacagcta tcttaaattg ttttgggctg ggttcaggtc tttgcatttt gatgctaatt
      301 aagattaaat atctctcact actggatttt gtagatcaag ttaaagtact tccctaatgt
      361 catgtaattt tctggcatta atgcacttta tcattgtcat aagtgtaaat ggttcattaa
      421 aaccaggagg aatagaatac ttttatggat ttctgctctc atgttaatgc tgttttcctt
      481 tcctcatgag taatctcttg atggcttctg tctccacaga acagagataa ctacatccgt
      541 tcctgcagat tgctccctga cggccgcacc ctgattgttg gtggtgaagc cagcacgtta
      601 tccatttggg acttggcagc tccaactcct cgcatcaaag cagagttgac atcttctgct
      661 ccagcctgct atgccctcgc tatcagccct gattctaagg tctgcttctc ttgctgtagt
      721 gatgggaaca ttgcagtgtg ggatctgcat aaccagactt tagtaaggta ggtcagtaga
      781 actggatcat cagattgtga agtattaatt agacacatcc ttacatgctc ttctgtttat
      841 gtatgcatag tttccagtat ttcatggcta gacaagcacc atggtaatac cttgacaaaa
      901 ttctgtatgt tgtttatagg ttttgagagt ttcattattt caggcacact gagcaacccg
      961 taatacaatt tattaacgtc agctggtttt cacactgctg taggttcttc gaacagatgg
     1021 ttttgtttcc atgcagtaca ctgtgctcac actacagtca ctttaatcag tgc
//
LOCUS       KCLA01000059            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 945upu ultra-conserved element locus uce-978,
            sequence.
ACCESSION   KCLA01000059
VERSION     KCLA01000059.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-978"
BASE COUNT          270 a          208 c          268 g          313 t
ORIGIN      
        1 agtcgctttg gccaagcaat ggattagagg aaactgagtt agatgggaag ggagaccggg
       61 ttaaagaacc ctgctttggc tccctgttaa tcgtagctat ctcgtgcctg ggtaactgct
      121 tgtaaatacc tgctgagtcg ccaagcctgt gttaaggctt cttaataaat cttgaagact
      181 taagatcctg agctttgatg ccacccatcg cttcccagtc caaaggcagg gcaaagcaag
      241 acggcgatgc cgagcgctcc agctcggctg atgtggcaga acgcatcgcg atctctctag
      301 ctgtgtaaga ggggctgcgc gggagctcct gaaaaggtca ttggtatttt tggagcaata
      361 aatcatggag ggaaagattt gcatttcggc tgtatgaaat ccagggctgg attagcgaga
      421 gcatgcttcg cagtaatatt tctctcctga cttgttttat tagcttcctt taaacacgtt
      481 acattattgc ttatagaatt tcatttactt ggattggcag cttgataaat acgtctattg
      541 gcgatgattt ggattgctct gggcattaat attattaaaa cctgtcacaa ggaaatgtct
      601 gaaagatgac ttactgtaaa gattacagca tgaaataaat catacaatgg tatttgttac
      661 cgtttatggc ctcttggagc cgagtcaatc cctttttatg ttgcattatt tttcaagttt
      721 ttatagccgt acattatata tcgctgtcag gagggaacag atggggtgtc aaacacgagc
      781 cttctgaata attcccaccc tcgggttatt tgtatgaagg acaagtgtaa aactgtgttc
      841 tcgagaaaaa ggagatggat cgaggtggag aaagtgttgt tacagtgagc aggatccctt
      901 ttgtcagcag gcacattgtg cttttgatca ctacctggtg tttgctgcag gctgggggct
      961 gtgtggagaa tctagcggtc tctggcgcag cagaaaactt catgggtcac acaggcttcc
     1021 tcttccttga gctttacctt cattgctaga gcaggactg
//
LOCUS       KCLA01000060             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 961upu ultra-conserved element locus uce-4679,
            sequence.
ACCESSION   KCLA01000060
VERSION     KCLA01000060.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="961upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-4679"
BASE COUNT          285 a          194 c          171 g          329 t
ORIGIN      
        1 tgcttctcct actgtgtaca tgctttcaca taataattgt atttctgttg ctgcatttct
       61 tttgaaggtc tattcagtca catatttctc tgtgctttta aaagaggtca caaatattta
      121 tgaagcaatt caaatgctta tcaattactt ttgtaggtct tggtattaga acaggtactt
      181 taatagctgt ggttgtctct accttggctg atatttcctt attcctcata tctagaagtg
      241 ttatcagcca tcacagagca ttaccagtat catatgaagc acttttcacc ttcttcagtc
      301 tgggttttat ttgaaaagca gacatgcagt ccccagtgag aattaaagta gaagcattag
      361 cttgcaaaat atatgccaat gacctaatga ttctgacatt tccacaatac aagctttaca
      421 agcaggcatg cagacagcat agtctgtttt tttatctcat atttttttaa tgggtaaatg
      481 tttggaggaa acaaaatgga tttattctgc tcaatccagg gtataatatc aggacttatc
      541 cggttccggg ccccagggct tcagacaact aacaaaatgc atcttacttc tgctctgcta
      601 gttctctgtt atgcttttca catgcaggaa gaaagagtaa aagcataacc caactgaata
      661 aagcagcatg gcctgctatt ctttgcttat gaagcatcac accaaattaa gaagaacccc
      721 ccacctgtgg tgaagtgtga gtgcaactgg caagccattt tatataatat agggggaatt
      781 ttgctctccc cttcttagcc agagtgcagg aatatgttaa aaaacgtaat gtcttatcaa
      841 agcaattttt taataatcca gctcttttcc ttagtttaaa taaaatcaaa gatgctgctc
      901 cttgatccat tttgaaatct ttcagccttt caagtctttt gctctgatac atggaaagaa
      961 acctagttgg aggtctcct
//
LOCUS       KCLA01000061             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 977upu ultra-conserved element locus uce-6842,
            sequence.
ACCESSION   KCLA01000061
VERSION     KCLA01000061.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="977upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-6842"
BASE COUNT          275 a          174 c          166 g          333 t
ORIGIN      
        1 aagtcttgta attctcatca gaaagattgg tcgttctaca aactgagatt ttactttctc
       61 cagcctgcat ttctatgaca gtcaacagca ttattccaaa acactgtaca tgcatcctgt
      121 ttccctaaaa gcttgtatta atatacattt agatctatct gtcttgctag ctatagctat
      181 atctaaccac aataaaagag tagagctctc tcaagtgtta tgcctttaag ttaaacttta
      241 ttgaaataaa ataaggaaag aacaatacat tttgcattct tcagaagcta gtgttcaata
      301 aatactaagt tttgatcgat tgatacggtg tcatatttga ctaaagaggt gggaaagttg
      361 ctactgttgc tttgtgcttg ctagaagaag aatgcactat tgattttata tgttggatgg
      421 gctgtcagcg tacagtgcat tgttgatttt gacttttata gccaacatgt ttcctttaat
      481 tggatcattt gtaaaagaga ggagggtacc tgttcccttc tgacagtgac tgattacaat
      541 catttcatgt ttgtcaatat ttgataaacc cgtggttacc caacaacatg gctgaaagca
      601 gcatctttat gcatttgcca gtttcccctc tttcctgttt ctgatttcag tcttagtgta
      661 accagtaagt tgtgccagcc actctttctt cctaatcttt attgttatga aataattttc
      721 ttagtttttg actctttgta gaggaaggta aagtaaggaa gagaggaaga acatttttac
      781 tttgagtcaa catcattgcc aacatctcta ggtaatagaa aaagtctagg acacccatct
      841 gtacccttgc ccttggtgct ttcaccacta tttttatgat acgcatggtt ctgtaacctt
      901 gtggctaagc tttcagctct ctaatacact gaaatgaaat aaaatatc
//
LOCUS       KCLA01000062             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 992upu ultra-conserved element locus uce-4963,
            sequence.
ACCESSION   KCLA01000062
VERSION     KCLA01000062.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="992upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-4963"
BASE COUNT          279 a          142 c          165 g          261 t
ORIGIN      
        1 agagagccat taatttttac aacttgtcag aactaatagt tttctttgtt tgaactcaga
       61 cacccagtct catttggagt gctgcactgt atgtaatgca gggagcatgc ctttttccac
      121 acagctagta agagaattct gtactgcctc ttctgtaagg aggctattta gatggagggg
      181 aagagacaaa ataaagttgt ttttcagatc taatctttgt tatctcaatt ttccacattt
      241 acagtcctta tggtctttcc tgctctcacc aggtaatttc cagttattca gtagtttccc
      301 tttagcctta ataaggaaat gttcaagtaa ggttagtgca gaaaattaag actgcattaa
      361 gattaagtct gaaatattcg gctgccaatt agccctctag tatttctgta agccttgaat
      421 ttttgatgcg atcaatgaca ccaagtgggc ccatcttctg tggagtggtt attaaagaaa
      481 taaaaatcaa tacaaagatg atacttggaa atctatatta caagataatg aatcaccatg
      541 agagccagct aagatggaat gtcagcaaac caaacagaag gtttgtgcat agcaaattat
      601 ttgatgctag tagagtttaa gctaaatttt gcatgagaca gaagtcttca ggcaacactt
      661 aggatacatt tgcatggcaa ggttttaatg agatgaagac aagaccaacc atgcacaggg
      721 ctttttgtgc attaaagaga aacatgagta agagatgatt gagagacatg ggattaagat
      781 actaatacta taatttgagt ttaatgacaa aacagaatca aaaatttctc tctcagtaat
      841 cctcact
//
LOCUS       KCLA01000063             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1008upu ultra-conserved element locus uce-2651,
            sequence.
ACCESSION   KCLA01000063
VERSION     KCLA01000063.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1008upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-2651"
BASE COUNT          148 a          122 c          152 g          153 t
ORIGIN      
        1 acggttagtt tgcggttttt gccatggtaa catatactgt atgcttcaag taccagttca
       61 aagatgttgt gtactattgg tcagataaag ttgttacatc aagagaattc accacataca
      121 acaacaaaaa tgcttgtccc tagcacaatt cacagcttca actgctacag actgtcactg
      181 aaaaaaaaat gcatcggtca gtctgaacca tgtcaagtaa actatggaag tagcatatcc
      241 acaacacaaa ctgtgctagc actttctttt caagtcaaac ccccaaaaca ggtacagttt
      301 gggagtcact actccgctct gtggaagggg gtggatcgtg gcggtcagac aggttggagg
      361 tgtggtttta cagtacattc tcgtggccca agccgggttc caggcagaga gctgcgtggc
      421 cggtcctgca gcattagcaa cagtgcattg acattattgg gatgcagctc agtaccgatg
      481 tgtctgatgc gagtactgtg gcggctgctg ggaggtagtt gaatatccca tgctgctctg
      541 tggctgtgat gtgcttggtc cggggttggg gtagg
//
LOCUS       KCLA01000064             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1024upu ultra-conserved element locus uce-185,
            sequence.
ACCESSION   KCLA01000064
VERSION     KCLA01000064.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1024upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-185"
BASE COUNT          160 a           55 c          108 g          145 t
ORIGIN      
        1 aaaaagaaaa aggagggggt ggtagaaggg atagagttga gaaaagggag gattaaatag
       61 aacagtatac acttagtata gctaacaaaa ttgaagtcat ttactggaac gtttttaatt
      121 tgatttaaac aaaatactct tttgtatatt cagattggga gtagctcagc tgttgtgaag
      181 ccagaaaatt aatgatattt ttagtgaaat agaaaagcat gtcaacaaca tagctgtgga
      241 tgataatgtt ggcattttat tcatgaggaa ttatcaatgc aggttactgg acaacatagt
      301 gtgactggaa tgattgagca cagaggggaa gcggctgtcc ttctgtaaga tgatttcatt
      361 ttgcatttag tctgtcagga agaggaaaag aatgaaagca ttaaaaatat gtcttagact
      421 tctattcttg tcatttctgg ctcctggaga ctaacttttt tacctttg
//
LOCUS       KCLA01000065             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1039upu ultra-conserved element locus uce-3349,
            sequence.
ACCESSION   KCLA01000065
VERSION     KCLA01000065.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1039upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-3349"
BASE COUNT          145 a           68 c          131 g          110 t
ORIGIN      
        1 acggaatgcc ttgggaaaca aaaggtttta atggctggtg cttggtatcc ttgacaacac
       61 tccccaaaga atattacatt agggcaccag agaactttta aaaataagta atggaattcc
      121 gtctctgtta tgcttttagt agtcatttcg gccatggtgc agcgaggtca taagctgagc
      181 tcagtgaagg gagccagaac acgaaatgat gctgagagaa cgtctgggag atgagaggta
      241 cagaattaca agcgaaagtg caggcctgct gaggcaatta cagcttaatg gggtcatttg
      301 gaaggcaatt gccaggggtt aatgtagtat ggagagatga ggtgagattg aagtgaaatt
      361 tggggctgga aatgtgttaa gatgaaagat cagagtgcag cggattctgc ggcgcagaag
      421 gtttatatca tgcaaagaaa tctgacaaaa aatg
//
LOCUS       KCLA01000066             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1054upu ultra-conserved element locus uce-6448,
            sequence.
ACCESSION   KCLA01000066
VERSION     KCLA01000066.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1054upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-6448"
BASE COUNT          259 a          119 c          188 g          273 t
ORIGIN      
        1 tgattgaatg gctattactc cacattaaga gtgtggaaat aatagaataa taaaatactt
       61 gcaacacata taatggacag taatgctcat ttatagacac taaggaacaa cgcatagctt
      121 tgtagtaaat gtacctggac atgtcagggt ggaaagtgct gagtgctcgt gttttatagg
      181 tataaatgtg ggagaaagga gggttacctg tctagcggtg ggggggatga ttttgcttgc
      241 tatgaatagc tggtgaactg gtgtatggaa gcatcatggt gacagtttaa tgatgatgtg
      301 gtgctcctta tgtgtaatcc cacccccacc catgacaaac cttttcccag ttggggctgg
      361 aggaaatgag taatgcttaa cccatttgtg tgatcaattc acttaagcag ctactgtgaa
      421 atgttaatca caactttaat ttgtactgca ttagcatttt gattaacttg taggcttgct
      481 agcacacttg aagcactttt actcatagtt acagctcgga aatgactttt tgattaatta
      541 agtttgttag acagcagctg agcttcctga atgctaacct tatggggcta aaagttcagg
      601 agaaagttac tgggaataac tgttgccatt gaaaaggatt cttgtgaatg cgttcagaaa
      661 tttgtattta ttgacaaaat attacataat tagtttcaaa cagattaaac tctaaaagga
      721 taggttgatt atgagaaaga tgatgtatat ttttcatggg tttggtagat ttatgttatc
      781 gaaaatttta atgaaaacca gtttgttgta tttacggttc actagcatag taaggatta
//
LOCUS       KCLA01000067             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1070upu ultra-conserved element locus uce-4786,
            sequence.
ACCESSION   KCLA01000067
VERSION     KCLA01000067.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1070upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-4786"
BASE COUNT          200 a          146 c          163 g          197 t
ORIGIN      
        1 gggaagaaaa caagactctt catggggaag aagatggcat tatatttggt ggagaggaat
       61 tcagctgcag ttccagatag catttctcct cggtgtgatg tgaccactag agagcagact
      121 gaacctagta acaagagcta attagttctt ggccatttcc ttttcttccc caaccccctc
      181 ccacctttct gtctcggcag aggggacttc gatagttctt agctttgcct ccaacgctct
      241 gcaatcttag ggctaattaa aacaccacag acggcctgaa ccccacatta aaatttgatg
      301 aggaattgat cagccaagca aacaggaaat ttagctgtgt gagtgaaggt aatgtttgtt
      361 caaatgtgta atgaggtcca tggggaatat ttatggggac cttagtgacg gtttcagcag
      421 ttccttctcc ttgaagtcat cttacctacc tgccctgtcc ttcatgagag tgtaggcata
      481 aagaaacaca aagctgcatc agatgctttg gaaaatgggt tatgtttgtc taagatgttg
      541 cggtgtacag ctttccgtaa ggagttgtga agtcttgcct ttgcactaaa aacccaatat
      601 taaaaaacat ccccaaatag aaggaactgt atagtaaaat agctggtgga actccttgca
      661 gtgtgttagc aaactatatc gcttgctcag aaaggatcgg gctctg
//
LOCUS       KCLA01000068             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1086upu ultra-conserved element locus uce-6791,
            sequence.
ACCESSION   KCLA01000068
VERSION     KCLA01000068.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1086upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-6791"
BASE COUNT          189 a          134 c          154 g          177 t
ORIGIN      
        1 actgataaat acatttccct ccggctccat acatcaggtt acccccctta ttgtggtagg
       61 agccagaaga gtgatggcaa tctagatggc catggagctc tcagttaaca caccggctcg
      121 caacaccagc agatgccgtc taagccttta aatcgtgcac taattgcact aattgagcta
      181 acagtctctg tttcgtctcc ctaccctgag tcaaccagca tcttctggta ctgctggaga
      241 gatccaagct gttgactgta gtgttatttt gtcagccatt aaacgattca tcagagtcat
      301 taattgattt attactgctg tctgcaagta tagctttgca aataaagaag gatggaggtc
      361 agaaagcaat ggaaatcgga caaaacacca cagccaggag ctgggcactt ggattagtga
      421 taggagtctg cttgtgtagg gctgctggca ttggattatg gggggaaaaa acagagggaa
      481 aagagatgga acagtctggt tcagctgtgc tgccaagcca gttaggtttt acagctaaaa
      541 tctatgtagg atgtaaaagg gttattaaaa ccctcttgtt ttcttaacct aatccttagg
      601 aagaaaccag gttaccctgc tgtataaatt gcgtttaata gcatcaggta agag
//
LOCUS       KCLA01000069             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1101upu ultra-conserved element locus uce-3630,
            sequence.
ACCESSION   KCLA01000069
VERSION     KCLA01000069.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1101upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-3630"
BASE COUNT          275 a          186 c          199 g          238 t
ORIGIN      
        1 atttttgtca catcagagca aagcccttga tgtccagcgt cggctcatcc aattatgtct
       61 gatgctatta tgtctttaat cccaagatgt ctttttaatt gtaacagatt cttagtgctg
      121 ccagaaaaca gaagaccgca gaaagaagag tctggtagac tttttgctaa actaaccttt
      181 gacgctcagc tccaggcaga ggttgcctgg ctagtttgtc ccttctggag gtggtgcact
      241 agcctactga cagggaccac tctgcacttc tgtctgtgcg cagagaactt gttgacctgg
      301 acagctctga cagaaagacc actgattttc ttcccatgtt ctttaactgt aggcacatgt
      361 ggccaagcta aacccccgca gcgcaactgt tttttcctat ttacacgtta ctaagagaca
      421 ccagctaagg agatgttatt acaagtttgg gaatgacccc attcttggcc cggggccaag
      481 ccaaacattt tatttcattt aaaaaagcaa aatgtgatag agtcagtagt tataattatg
      541 attggcaagc agaggtggag tgctactatg aaacagacgg gaaattccaa taatcctaat
      601 taataagcag agtcattaat tccatcagtg ggatgagcag aaatgtcagt ctgtctggag
      661 agcagtttgg ccaggaaagg gcacaggaga taaacaaaaa aggactggtt catccatcag
      721 ggtaccacga tgtgataaag aggttcacgc tgaggttctt ctcaaatctt gtttgtgatc
      781 gatccttcaa gctgcatttc cataatcgga acattaaaaa aaaagaagca caacctaaca
      841 atacgattta agcagcaatg aaacagacct ggagggggga aaaatgatga aacaatct
//
LOCUS       KCLA01000070             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1117upu ultra-conserved element locus uce-6497,
            sequence.
ACCESSION   KCLA01000070
VERSION     KCLA01000070.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1117upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6497"
BASE COUNT          198 a          106 c          108 g          255 t
ORIGIN      
        1 tttttgtaag ccactaaaag tgtctgtgct ggctgagttg aaacatatat caacaaacaa
       61 acactcctga ttccaactct tgtttttatt ctttgaaaag ctgctagttt cattacagaa
      121 tttgttgggt cacctgaaaa aatcccagtt gatccataac gctgcaactg atggatttac
      181 aacaaaatcc atatccgtta ttttatgtac attttgttgc ttaaaaagaa tatcttaata
      241 taacagctga tactttttaa atccacattg aaacaactgt tggattttta tactgttgta
      301 aaactctttg tagggtattc atagaaaatg ttttattaat tgccatatgt ttattgattt
      361 ctctttcatg ttggttcttt tgttctttct ttgtagtggc aaaagatctt tctgcatcat
      421 catttgcaag ttatctaaaa tgtcaaaggt gttcttttga agtttattat agatcacatg
      481 ctgtacaggc cttgactttg gcatatttac aaagaaagta catactttgc aagctcagaa
      541 agcaattggg gctgcattag ttaaaacagg cagaatattt tcctactttt tgcccctttt
      601 ttcatttaag aggaatgtaa acaattctgt gttagaaaaa ctgatgtgtc aggtaattgt
      661 tgttttc
//
LOCUS       KCLA01000071            1022 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1132upu ultra-conserved element locus uce-6007,
            sequence.
ACCESSION   KCLA01000071
VERSION     KCLA01000071.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1132upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1022
                     /note="ultra-conserved element locus uce-6007"
BASE COUNT          343 a          168 c          199 g          312 t
ORIGIN      
        1 ccagagttgt tgttgttgtg caactttttc cttgcaggat ggcaatggct atatcagtgc
       61 tgcagaacta cgccatgtta tgacaaactt aggagaaaaa ctaacagatg aagaagtaga
      121 tgaaatgatc agagaagcag acattgatgg agatgggcaa gtcaactatg aaggtaaaaa
      181 gatgctcatc caggctgaat tacccagatt aaatgaaagc cgttgcacag agcattaatt
      241 tctggtactg ggttgtctac ttaaaaaaaa acgttagggt tttttaatgc caatttaaga
      301 ggcttatcag tttaagtatt ctggagacaa taaatcacag tgacttttta tcttttcaga
      361 attcgtacag atgatgactg caaagtgaag agacctcctt tacacctttt ttcctctaga
      421 agaatcaaat tgaatctttt acttacctct tgcaaaaaaa aagttcattt attcattctg
      481 tttctgtata gcaaaactga atgtcaaaat accttttgtc cacaaactgc atgtaatggt
      541 tggtggtcct gtccccaaaa gataaacatc agttttacaa tataaataat tgtactacct
      601 tgaaaataaa aaaaaaagga agcacttagt gaactcgaaa gttccatttg ctaatgacta
      661 ttacactgtt tgggctggcc agtttttcat gcatgcagct tgacaattga gcacagtcag
      721 acatttgtat taaaaggaaa aaaaaacaac ctaaaggatc cgctcttttg ttcaacagtg
      781 gattctagtc caatttgtag tataaattgt catagctggt ttactttaaa attggtttat
      841 acctcaggat ggtatgcagc aaaatggttg aaggatgcag aatttaaaga aaatgcccta
      901 aaggttgaat ggttctcctg tacgtagcag tgtgctccaa aaatacgatg atcataacta
      961 tggatggcat gtctgttaaa atactggttt aacattgtct gcattgcact atagtgaaac
     1021 gg
//
LOCUS       KCLA01000072             317 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1147upu ultra-conserved element locus uce-2491,
            sequence.
ACCESSION   KCLA01000072
VERSION     KCLA01000072.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 317)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..317
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1147upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>317
                     /note="ultra-conserved element locus uce-2491"
BASE COUNT           59 a          108 c           91 g           59 t
ORIGIN      
        1 ctcgcgcggc cgccgagcca ccggcgccgt ccggcccgcg acagctctga cagccagacc
       61 ccttaattcc ttttccttat tcccttaatc tgtcatcttt atcaggctgg ggcagtgcca
      121 ggcagcaggc aggagccccg gccccgatca atctccacat tacagctgac agaatggtgc
      181 taataactta ttgatcccgc gctggccgag ccccagcggg gccgcgaggc tgccatcgat
      241 tggctccagg gaaggagccg ccgggctgcg agaaaagcct ccgaattgtc ttcttcccga
      301 ggagctggag ccgcagg
//
LOCUS       KCLA01000073             951 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1162upu ultra-conserved element locus uce-760,
            sequence.
ACCESSION   KCLA01000073
VERSION     KCLA01000073.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1162upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>951
                     /note="ultra-conserved element locus uce-760"
BASE COUNT          314 a          166 c          145 g          326 t
ORIGIN      
        1 aaaaacagtc tcaagccttt aagaagattt acagctgcca caacagaacc ctagggtctt
       61 ccctgtcagc agtcacaaga aaaatttaga ctatgacacc aaacgctgaa ttgatacaaa
      121 cctccctcca aataaagaag tttttaaaaa atatcaaaac cctaatacgt ttaatgaaat
      181 taatcatcat aaattacttt ttagcacaga gagttagatt tataatatca ttttcaaatc
      241 tctatgtgag gtttaaatat tttatagcat atgtgagtta gagggaaatg tgtctaatgg
      301 cttaaatatc actgtagtgc ggtagacttc gacaaaaact gtagcacaac tgtttctaag
      361 gtagtttgta aaaattattt atttccatac cagttaatta tgatgggagt ctttgttgaa
      421 tgcacaagca ttaaaaaagt gctgatattt tatgcatctt taactgtaac gtgcttccct
      481 gcagcgcatt ggtaactcct tgacatttaa cattcactca cagcaactat aataaggggt
      541 ttgattgctt cttttgcaga tgcagtaatt taataactgt gatcagttgc ataaatttac
      601 tatacaacca tcttaagtta gccacattaa aattaagcaa aattgtaatc tgttgacaga
      661 ttattgctcc tgaacaattc tactaaaagc atttcagatt agcttgtgcc acaagcattt
      721 ttgttttata agcttgtaaa aaatactgct gctgtttttt gcttccaatc tcactattag
      781 aagattacat gaaattcaat gctttctgtg aaatcacctg aactgggttg atttagttag
      841 ttataggtca ttatgttttg aatcttgcta tttaaaatat atcagtttgt cagttccttc
      901 atctacttac ccagtaatac gtgtacaacc ttgcaccaga ttcttctgaa t
//
LOCUS       KCLA01000074             404 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1176upu ultra-conserved element locus uce-6947,
            sequence.
ACCESSION   KCLA01000074
VERSION     KCLA01000074.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 404)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1176upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>404
                     /note="ultra-conserved element locus uce-6947"
BASE COUNT          139 a           71 c           92 g          102 t
ORIGIN      
        1 ttatttgtct ggtattacaa aggcagagaa gatatcaatt aatataggca aagaggaccc
       61 ataatttata attaactggc aagtggtttg taacaaacag cagcactgaa tctaatagcc
      121 agcagaaaaa taactagtgt tgatttgtcc ctcggcaaat taatagagtg cttatcaatg
      181 acagggttac ataaaactgc taaataaata atcatcagcg agttggagtg aagcagatct
      241 ttaacaagct taatctgaac ctcttgacat ctgtagacta tgaagagatt aaatgctaag
      301 aaagagaaga cacagcggcg cgtgctcggc ggctgcgcga ggtactgttc ctggctagcg
      361 agaaataagg aacccgaagc cgacgtcgca ggattatttt cgtt
//
LOCUS       KCLA01000075            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1191upu ultra-conserved element locus uce-3530,
            sequence.
ACCESSION   KCLA01000075
VERSION     KCLA01000075.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1191upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-3530"
BASE COUNT          282 a          212 c          231 g          282 t
ORIGIN      
        1 tatttattaa gtttgtaagt tgtagccctt gagaaaggga agaagtttaa atttaaattc
       61 aagataatat tgcttgcttt ctctttttac aaaataaagg tggtgtcaac caaagagtga
      121 taattttctt gttactgttg atgtggagac actttaagcc tatctctgta acggaaataa
      181 aggtatatta gaaaaaaaag tacctctcta aaaggtctct gaggaaaaaa ggtcattgct
      241 agcagatacc ttgttcatct tatgctgggc tggaagttag aatgcattct tagaatctgt
      301 agaaatgttt tggactgaat tacacttgct tttcctgggc atcatattct acattgctca
      361 tttttgtact gttttcttgc agagtaacag ctatccacca atgtcagacc cctacatgcc
      421 tagttattat gctccatcca ttggatttcc atactcatta ggcgaagcag cgtggtcaac
      481 tgcaggtgat cctcctatgc catacctgac aacttatgga cagatgagta atggtgaaca
      541 ccattatata cctgatggtg tgttcagtca gcctggggca ttaggaaaca cccctccctt
      601 tctgggacag cacggattta acttttttcc tgggaatgca gacttctcta catgggggac
      661 aagtggatct cagggacaat ctacacagag ttctgcatac agcagcagct atggctaccc
      721 acctagttct cttgggagag ccatagcaga tggacaggct ggatttggca gtgacaccct
      781 gagcaaggtg cctggcatta gcagcatcga gcaaggcatg actggactga aaattggtgg
      841 agatatgacg gctgctgtga caaaaaccgt aggttcggct ctgagcagta ctggtatgac
      901 aagcattgct gcaaacagtg tgcccccggt gagcagttca gcacctaaac cgacttcgtg
      961 ggccgccatt gcaaggaagc ctgcgaaacc tcaaccgaaa ctcaagc
//
LOCUS       KCLA01000076             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1207upu ultra-conserved element locus uce-6532,
            sequence.
ACCESSION   KCLA01000076
VERSION     KCLA01000076.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1207upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-6532"
BASE COUNT          246 a          117 c          164 g          280 t
ORIGIN      
        1 gtagtctcac ctactagtaa aaggaatttt tatttttttt ttaaaaaaca aagagggtaa
       61 ttctatatgt ttgattatgg aacatgtaga tgatttctgt gataaaccag agatagttca
      121 tgtttacttt gttacaaaga aaacaactcc tgtgtaatta gaccagaatg cataatttga
      181 ggttacatat ggtaaatcag ttttgcttgc atggtgctgg atgctgttaa tgcatgaaca
      241 gtacgttgta taagaacctt acatgggttt gtctgtttgt tgcagaactg tcagaaacta
      301 gaaaataatt tcgatgacat caagcacacg actcttagtg agcgaggggc acttcgagaa
      361 gcaatgaggt aagtctgggt caccatggca acagtcacag atgtggtaaa gaaagagtca
      421 ttcttcatta ttgggggaac aaatgagttc attgccacca ttcagctcta ttctctaagg
      481 tattaatttg tcagtggaga ggcttccctt gaggcagtac tttggttttg aagctgcata
      541 aatgttaagc ctgactgcac agtaaaaaac gtaaatgttt aatttgttat ttaaaatgct
      601 taaggggtgc cttgctttat atttatacta aaccacgagt gaatgaaaat attgttcatc
      661 taaattctgt aagtgttaaa gcaattgcac aatggtatct gaacaaacct gtattttcct
      721 ttaaatagtt ttgatttttg tttgtctatt tcctgtagac tgtgatttta tcaccaggtt
      781 tacattattt tggttttgct aatggaa
//
LOCUS       KCLA01000077             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1223upu ultra-conserved element locus uce-7117,
            sequence.
ACCESSION   KCLA01000077
VERSION     KCLA01000077.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1223upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-7117"
BASE COUNT          215 a          163 c          130 g          221 t
ORIGIN      
        1 cccccctcat cttggtttag gtttaattaa gaattcctca gttacaactc tgtagttgtc
       61 aaggtctgag agactcttgg aaaacttgtg tttcagtctt gctggcccaa gcataataaa
      121 aaaaaatacc cagcctgaat cgaattttta tgctcagttc acggtagatt tcactccatt
      181 ctcatgtaaa cagcttctac gaatcaacat atgtgtctgg gtggtatctc tcactttgtt
      241 ttgtaacaaa aagccatatt gcatcattta atttgctcaa gtcatgcaaa taggaaaaaa
      301 tcaataggac aaaaaggggt cgacttatcc tcctccccac taaactgctg cccacacaca
      361 gagtcctgtt gcttatggca aaagaataac aacaacacca ttgtgtttgt tagttggttc
      421 actaatgggt gaaactggag aacatcattc tccttcagtc cccagctctg tccaaatgtt
      481 catgcctttt gagggagcat ttgtcctacc ccctctattc ccagatgagt gagaactgtc
      541 ttactgcagg ttttcagctg cagatctctc tttattcata ccatatgcag cagcagtttg
      601 agtttcaagg cagatatatc tcttcacatt gtctagagat ggtgtcatta agctcctgtg
      661 tgataactga attaaactag aaaccaactg cacacagata acctgaaata tctagctgtg
      721 aaaaagaaa
//
LOCUS       KCLA01000078             315 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1238upu ultra-conserved element locus uce-2788,
            sequence.
ACCESSION   KCLA01000078
VERSION     KCLA01000078.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 315)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 315)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..315
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1238upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>315
                     /note="ultra-conserved element locus uce-2788"
BASE COUNT          124 a           49 c           63 g           79 t
ORIGIN      
        1 atatagaaag tagaaaaaat gataatttga aaagatgaga agatggtgca gggtaaaagc
       61 tgatattctt cctttataac agatagcctc aagttgtaga gtccattatt tcttgcattt
      121 tcagagcaaa tgaacttgac agatggctgt gtcacctaaa cccctaccta ccaacttgat
      181 tatgcagaaa acaatacaat agaaaagaaa tcattactga aggaacctgg ttagtccaca
      241 gaggactgag cagtgcagaa gaacaaaatt acagttgtgg aattgaacag caagaataca
      301 tttaacataa agtgg
//
LOCUS       KCLA01000079             973 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1253upu ultra-conserved element locus uce-6101,
            sequence.
ACCESSION   KCLA01000079
VERSION     KCLA01000079.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1253upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>973
                     /note="ultra-conserved element locus uce-6101"
BASE COUNT          307 a          205 c          179 g          282 t
ORIGIN      
        1 cttcccagag tgttccaacg accggtgaaa gtacgcttta aaagacatac gtgtcttata
       61 taggtatgtc tgcactagat ctggcatatt ttttctctag caaaagaaaa aaggagacag
      121 tgtcagttta aatccctgat tcttcaaaat tcattgcttt tacaagccat gcagactctc
      181 ttcaggagac ctgaacctat ttttttttct cttttgcagc aagtgtatca ttaataagag
      241 caagttagaa gtgctttgca tttcatcttt ctgaggattc atccactggt gcatatataa
      301 ctgacattta aaattagaca tatattaaaa tcagttactg gagaagtcct ctgccttcca
      361 ctgtgcccac agcttgtaat ggtctaacca gctagaatat accgtaattg tcattcagtg
      421 agagtctatc ctagaaagtc atgcttcagt ggagaagact gagtttccat ttgaaatcaa
      481 caaattaatc caagacaggt atctgaaagg gcaagtttaa taggaagcag ctactgggct
      541 ctcaaccatg ataaaatgtt attgctgttt ccctgtaaat tggctgggaa catatgatac
      601 tctctgcata agagatccat tgctgcttga gagatatact gctcaagcta tcaaaatgat
      661 gacagtctgc cagtccccgt aacaacttgc cattggacgt ggcaagagcc tgtgcatgcg
      721 cgtgtgaatt tacaattatc aaagcctcct ctaccttata agcagacaag aagcctgtgt
      781 tttaactgta cttataatag aacgaaaaca atcgcttccc tcacatcaat gcttcatcca
      841 taatattcct aatgaagtga acagcagaaa ctcagcaact gacacgtacc aaaaaaattt
      901 ggataaaata agatccattc gagccagcgc tcgaaactca agttgtgctg agctttgaca
      961 aaaccacgta ctg
//
LOCUS       KCLA01000080             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1268upu ultra-conserved element locus uce-2023,
            sequence.
ACCESSION   KCLA01000080
VERSION     KCLA01000080.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1268upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2023"
BASE COUNT          207 a          126 c           97 g          210 t
ORIGIN      
        1 taaaaacagg taaacttatc ctgtaaagaa gcttattagc cagactgcta gtgctgcaaa
       61 aatcggctta aacaatactt tttttgttag aataatgacg tacggtttat tcttttatac
      121 tgtgcagcac ttggggacca catccattta ccaaaataat accaaattag tactgcaaat
      181 attgaaatca gacctttcag actaaccagt ggcctaattt tctcttcaat ctgctcttaa
      241 tctcaattca tcaataacac tgccttatta taggactttg acagcgagct agggcttttg
      301 ataaattata catctcaagc cagatttaaa atttgaagct caagtgctaa ttatctgtac
      361 aggcctagtt aataacgaga tttcttgtta agtatctgat cacagcatgg gcatcatttg
      421 tcaagaacct caagtctacc ttggagacta gctcttcgaa ttctcccttg cctaccatat
      481 gtaaaattgg gatctttgtt tctataataa ccttttatta ggaagctgac ataatgatta
      541 agttcactgt agacacatac aatgagttag acaattaccc ttgctgcttt aaactactca
      601 ggctcctcgc aagacaaaat aattaatatt gaattttaat
//
LOCUS       KCLA01000081             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1283upu ultra-conserved element locus uce-7362,
            sequence.
ACCESSION   KCLA01000081
VERSION     KCLA01000081.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1283upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-7362"
BASE COUNT          274 a          233 c          231 g          251 t
ORIGIN      
        1 ttgttttact cacaatgcta cttagctgca gccctttgga gacaagcaac cccatcactt
       61 caccctgcgt gctctctgag aacaaggctt tctggacaga gagcggagca gctgctgctt
      121 agcagagagc aaaattcaga ctgctggagt gggaggagaa ggggggcaac aaacaccatt
      181 tgtttaaaat ctggcaggag catcctaatt agctgaatta ttggagagat catcaggact
      241 gctccccaaa gtgccatacg actggagagc ccttagcaga cgtgttgatt taagactgca
      301 aaaacgatcc cccagagccc catcgctgaa cgccaacgcg aaaggctcgc tcgtccccag
      361 aatcaccctt cccgcatcgt gcagcggctc acttgccctg gatgtgaggc tggtaacagt
      421 taatcattca gacagggata aatatttatt cagggactac cttaacgttg aatgttattt
      481 cctccatgac gtaaactcgt tcaggaaatg ctttagccac ctcctccaca ctgttaaaat
      541 actgcactgg ctccttaata tctcggtctt gttccagcag cttaaactgc cctgaaaaca
      601 gatgataaac agaagagttg taagatattt atattggaca actgtcactg tggcaactgc
      661 tgcctccact tcttcagtcg gtttttttac tgttaacaac cgggacgatg aaagattgca
      721 gagggtctcc tgaacctgct gtgaaagacg gttttcccag gtcggaatga aaagaacgtg
      781 tgggagctgc agttaaacaa gattgtttta tcacatgctc tctagaaata gtaaataact
      841 gcggaggtat ttgtgtgcct gcctcagtgc agtactatct gtcctgatag catgttttgg
      901 cctctagaga aagcaaacac acccgtcaga ggaaggctcc acaataataa acacaagggg
      961 gttatgttct aaatctgtga ggggtggct
//
LOCUS       KCLA01000082             290 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1298upu ultra-conserved element locus uce-2435,
            sequence.
ACCESSION   KCLA01000082
VERSION     KCLA01000082.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1298upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>290
                     /note="ultra-conserved element locus uce-2435"
BASE COUNT           82 a           59 c           57 g           92 t
ORIGIN      
        1 aaataattgc tggctaacaa atagcccaga aagcaaactg gcctgaactc ttcaacacct
       61 ctccacattc aacaaggctg acatttatag ctttattgta gcagagacat ggcatttgga
      121 ttcagattgt ttggactgca gagtgtcagt ataaatagct atgattgact tttgtatgga
      181 gcacatctgg aagcaattgc tggcattcca gctagattaa agcatgtttt aaaggcattt
      241 ctccaggctt tttttccccc ttctttcctg gctatggtga ataaagtttc
//
LOCUS       KCLA01000083             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1314upu ultra-conserved element locus uce-4952,
            sequence.
ACCESSION   KCLA01000083
VERSION     KCLA01000083.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1314upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-4952"
BASE COUNT          148 a          108 c           74 g          165 t
ORIGIN      
        1 tgaatgtctc ccctaaagct gcagcaatca tgtggcatta gacacttccg gaatcctata
       61 gccaacttga aaaatcccag accccttttt tccctaattt ttgctctgat ctgtaatttt
      121 atccacattt gcactagttt gagcattctg gctctcccat ctgaaagcct gcaattacta
      181 tataattctt cgcaatttca catgtcctaa tatggactgt aatttttgcg caagacaatt
      241 tcctgctatt tcaagcatca acattgtcaa agttgtatgt acataataaa tgggaatatc
      301 aatgcatagt ttttagcata acatcttgac tcctcgataa ttatatccgt tcggagccta
      361 cgcagaatta gcctgaattg catggtaact gctgctgctt taaaattttt aaaaattact
      421 cataattttc ccaaagatta ccaagatctc gagtgcacaa tgtcatcagc gtaatgaaga
      481 gtaaacattt atgct
//
LOCUS       KCLA01000084             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1328upu ultra-conserved element locus uce-1457,
            sequence.
ACCESSION   KCLA01000084
VERSION     KCLA01000084.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1328upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-1457"
BASE COUNT          109 a           78 c           81 g          123 t
ORIGIN      
        1 agagagagaa atctgctgag cactaattat ttaaccttac ctcctaccta ctttctctct
       61 ttatactgag gtttcttaag ggctataatg agctgtcccc acacaaacag gccaaattag
      121 tggataatta ctgctgggtc tgtgaatgtt ctcactcctc ctttcttaca gtttcacaac
      181 attaccagaa tggtctgtca cctccctacc aattaggcac aattactact ttataacatt
      241 agtggtggca ggcttattat gttggaggat atgtaaaagt aagggagggt tggggtgagt
      301 gggcagtgaa tcaggccgga ggaggtcatt atcacattga taacttctat agtccaagag
      361 ttatttttat cattttatga catgcccaga a
//
LOCUS       KCLA01000085            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1344upu ultra-conserved element locus uce-1610,
            sequence.
ACCESSION   KCLA01000085
VERSION     KCLA01000085.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1344upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-1610"
BASE COUNT          228 a          228 c          200 g          347 t
ORIGIN      
        1 gcccctcgct gctccggggt ttccgtgagg accttctctc cgtttcgttt caaaagggca
       61 aaagtgtggg tagcgagcgt ttgccccgcg gcccgtgcca cgggcgatgc ttgcctcagc
      121 tgctccatca aaagccgctg tactaacgga tcctgactgc acttagcttt gtttccctga
      181 tatggtcata tcacatcagc cggggcacat gtgacattac atccgtaact ttaagcattt
      241 tgttgctatc ttcagttgga gcaatgttac gattcccaag tatatttttt ggcagtccat
      301 agcacattta tgtcagataa tggcctatta ttgttctctg atatggccgg ttttccacga
      361 aagaatgagg ccttttttcc cgcatttgaa tttccagata ataggctttg acttctggct
      421 gcacgtttat gggtcttttc atgttatcaa cttagctcat agcgtggaac taaagaacac
      481 agactgcaag tgacaggcca gccagtcagc aaggcaggcc tgtcagtatc tctcatccac
      541 taatgatttc cctttagtct attttctgtc tcattggccg tttccttcaa aaacaaaatt
      601 gctcatttaa attcttatgc ctggggcatt ttggtcttca aatattgttg gaaagtgaaa
      661 ggattaggca aaatatgctt ttttaaaatg ttaatatatt ttctggttca ctttctcctc
      721 tgaggccaat taggaaattt ctgctggctg cattaatgtc aaactgacaa ccctcgctat
      781 aattacactg tgcttgaaac ctaactttca cttgtgggta gatgactgcg tctggcagtg
      841 acattgaatt cgctctgcca gcttttgatc atttaatcat tgctcgcttt cttttcctct
      901 ttgctagctg attatttcac ctttattctt tctgttgcaa aatgcagtgt tatctttcat
      961 tattcacagt tgcattttgc aaggctcatt agtgccattg ttt
//
LOCUS       KCLA01000086             890 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1360upu ultra-conserved element locus uce-4264,
            sequence.
ACCESSION   KCLA01000086
VERSION     KCLA01000086.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1360upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>890
                     /note="ultra-conserved element locus uce-4264"
BASE COUNT          241 a          254 c          175 g          220 t
ORIGIN      
        1 actcctagag ctggcagagc aagccctggc tttacaaacc accctgagca gctcacagag
       61 ggctcgggtg aggatcacaa cgctgaactc aaattgccag tcttttcaca cggagatttt
      121 aatcctggat taattattcc aggcgttttc catattaatt aaagcagcat tgcttccttc
      181 ctcagttctt tatctgcttt ctcggagcga agctatttaa tcctggagat tgtgggaaac
      241 atttgttcac gattatccac acacccagtc aaacaagact gaaacaagag cagcatgcaa
      301 gaacgtattt aaggactatc atcccaaaat gctgctaaca gctattaacc agtacgtgtt
      361 aattgccacg gcattcatat taattttcac ttcaggccga cattgtggag tatttcccct
      421 ggtacacttt aaacaaagtt taatttaagg aactgcttct atcaacactt atgaaaatta
      481 acagccgagc aattagcact cgtgaattct cccttccccc acgcttcccg cagcaccgct
      541 ttacaaacag ttgctaccag agaaattgtt gggtttcagc acgttacccc agctagccag
      601 gagacgacgt gcgcagaggc acctctcctc agaccggaat gtccagccca aaaccacacc
      661 gccccggctg cagcttgtta cctccagcag cccaacccac aaagcccatt cgggatcgga
      721 agggacgtgc aatcgccagt cgtcactctc aactagctgt caccagaacc aaaacaccct
      781 gagcaaactc ccctctgcgc gtgggaaagg gccttggaac tccgtttatt ctagagctga
      841 gcgaagcctt ccctacactg ttctctactt ggtgatgctt ctcctaccag
//
LOCUS       KCLA01000087             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1375upu ultra-conserved element locus uce-5927,
            sequence.
ACCESSION   KCLA01000087
VERSION     KCLA01000087.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1375upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-5927"
BASE COUNT          295 a          192 c          178 g          273 t
ORIGIN      
        1 tcagctcaaa acgaaatgtt atttttctac tttagctacc aaactgagga ttcaatttgc
       61 atacctccat ttgtaagaca ctctaatatt tattttgctg ctgctgctgg agacacaaga
      121 attgtttgtt gctctggtag gggaacaaaa ttaaaaacca cctgaatgcg taggtccgtt
      181 attttccttt cacaataatt atgcagtgtg ttaaacaacg tacccgtctg acgcacagcc
      241 cgctgcctgg aaagacacaa ttaccataat acctcgctgg ttagacatac gctgagacta
      301 tgattatgca gagtttgggg agaactttat gtataaaaat attcttgaga agaagaaggg
      361 gtctgaagta aagagctaag ccagcacatt atctaattct caatgtaaaa taatgcagaa
      421 gtgcggaaga tgaacatctg atttgtcaca tctgatacac taatgtttta tccaaaagga
      481 agaacacatt gtagcatgct catccatctg cataaacacc acctggccct ttacaggcac
      541 ctactcaagt aacaaaagtt aatggcagcc catttgtagc catttccctg gtagagatgg
      601 aaagggctct ttattttttt ttctttttaa agtaacatat ttacatgagt gttgaggaac
      661 agctcccttc tcagcacttg cttttgaaac ctcattccca gtcactgtaa atttgagcaa
      721 tttgaaagaa atgttagaaa atagtatgta aagcctccta agtgtgctgg catgcatgca
      781 cgcagaattc tcatctaaac acacacatgt agctttgaag ccctggccat ccactgctgt
      841 ggagacacac cagaggactg taatacaaat ctatatttac ccaaacggac tgctggggtc
      901 atgatctaaa gagagcttga tatagcttct aatatatg
//
LOCUS       KCLA01000088             411 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1389upu ultra-conserved element locus uce-7381,
            sequence.
ACCESSION   KCLA01000088
VERSION     KCLA01000088.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 411)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..411
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1389upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>411
                     /note="ultra-conserved element locus uce-7381"
BASE COUNT           87 a           71 c           82 g          171 t
ORIGIN      
        1 tggatttcaa ggggctctgt ttagtttcct ttggttttct tttctttttt attttctttt
       61 actttatttt ttttgttgtt gttgtttttt gtttaatttc tgtgttctgg ccacacccag
      121 gagaaccgtc tgcttttgat ttctcccttt acggttacat ggtaaatttt ctttctcatt
      181 cttcagagat ggaaacgttc aaatactata tatatacatt cttttatttc actgctcatc
      241 atgttgcttg ttatttattg cagagtctga ggccagacta aaagggtggc agttactcgg
      301 tctcttcagg ccctttgaat aaacttgtgt taaaaggggg attagtctgg cactaaaagt
      361 caagcctaaa aatgtttgcg ggggttatgt agtgttcacc aggcacgcag a
//
LOCUS       KCLA01000089             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1420upu ultra-conserved element locus uce-5357,
            sequence.
ACCESSION   KCLA01000089
VERSION     KCLA01000089.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1420upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-5357"
BASE COUNT          158 a          102 c          104 g          130 t
ORIGIN      
        1 agctcctgca aacaccagcg aggaggatgc ttgcaccaaa cacagcgtga gccctgcatt
       61 taatcggtta ctgtaataaa catataaaaa aagatttttt ttccatgaga ggacagagca
      121 gtggctacat aaaaggacat caaatgacac atcctccatc tcccagcaaa taaaaaagcc
      181 atcagctcat aacaaggcgg tgataaaagg tgctgaggcc agtaagatta agactttgta
      241 ataaggttcg ggcgccaaaa ctgacagcca ttttctttta tatttatcat gtcttcacat
      301 tggggtgaga agccaggagt ctgtcccatt gctggctaga atttatagca gctccattat
      361 taggagattg cactgaaatg gggcagaggt atggttttct gagaacgcta caatagcctc
      421 ctacattata cacttgacag gtttgtcagc gcttagtaac aagccttgta aagtacttta
      481 atatcattag cact
//
LOCUS       KCLA01000090             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1436upu ultra-conserved element locus uce-2469,
            sequence.
ACCESSION   KCLA01000090
VERSION     KCLA01000090.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1436upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-2469"
BASE COUNT           90 a           85 c          135 g          100 t
ORIGIN      
        1 ctgacaggtc tttagacata cagacatatg gtaggaaagc cctccttcca ctcgttaaag
       61 gctctcactc attaaaagtg gccaaggaga gtccagaaga gatgtaagga caaggtggca
      121 gcacctgtga gcccttgtgc tcctcaggct ggtggggtgg aggcaggcaa gtggggggag
      181 gatttcaggt acttaccctg aatctgactc tgaggctgag ggttaaaagc agtggtgtgg
      241 ttcaaggagg ctcgtgggtt gggtgtgggg gctgggtggt gtggactgac cctcatggct
      301 gtacgacgca actgctccag ttcactcagg cgctctgaaa atgacaagct cccgggtttt
      361 gtctgctcat ctattttctg tcgatgtcct attgtgggag ggggggaaaa
//
LOCUS       KCLA01000091             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1452upu ultra-conserved element locus uce-720,
            sequence.
ACCESSION   KCLA01000091
VERSION     KCLA01000091.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1452upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-720"
BASE COUNT          186 a          193 c          163 g          202 t
ORIGIN      
        1 ggcgggacgc cgcagcgcca ctactacaca agttctttgt cctcgttcgt gctgcctccg
       61 ctccgcctcg tttttatcaa aaccagcaaa attaattttg caaaggggcg actgtatggc
      121 aaatcaccgt taacactaaa aggctggata aagagttctt agtaccgtta acgtgcggtc
      181 caacttacac ctaggcatcc ttttccatgg aaaagggttc ttaattttcg agttgttctg
      241 ctttattaaa gctcattacc atttctcttt taataagtgc tctttaaagt cattacctgc
      301 agtgaagtta aaggcagagc tattaaaagg ttactttaat gtgaataatg gcctcccaat
      361 atactcaagt taattactat tggaaactgg ttctatttta atttaatgct gaacgcttaa
      421 tgaaggatct gccgggatag caaaactgac aaaaattatt catggtcaac agccctctcc
      481 acgctgtctc gttcggagag agaatatccg cttcgacttc gacagcactg catttacaga
      541 acgacatcgg cacggctctc cctgacctgc agacagcacg agtgccgctc ggggcggcgg
      601 gacggcgctc agctggagca gcaatcagag ctccggcttc caaaaacagc agcgccatcg
      661 ccgacgcctt ctttcactac ggccgctctg ccagtttgtt tccccgcgtc tgtcttccct
      721 tctgtagggg caaggtgctc gcag
//
LOCUS       KCLA01000092             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1467upu ultra-conserved element locus uce-1781,
            sequence.
ACCESSION   KCLA01000092
VERSION     KCLA01000092.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1467upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-1781"
BASE COUNT          258 a          176 c          199 g          269 t
ORIGIN      
        1 tgcaggctgc acagactcaa tttcacaaag tgcgttggaa aggcagcatt cacataatta
       61 atgagaaaat gctgcatgtg ttcaggcctt ctgttaattg attaaatgag tctatgtcta
      121 aatctgattg taatcatgct gcggcagtac aactgagcaa gcgtgtaaga ggtaaagaga
      181 ctcttctgct ctcagatatg tactgtcctt cctcagatta taagaacaga gtaaaaattt
      241 ggctagtaga agaggtagca aacttccctg ttgaaagcta ggcagcttaa tcacaattat
      301 ttgaacagtt cctcttggtt tagtgtctcg gttcctgttt aatccattgc ttccactcat
      361 aaaatacaac attcttcata gtgaacgtca gttcgatgct tattgtggat aacaagtgct
      421 ggttagtttt tctgtggcat cataataaaa cagaaaaact gccatgtgct tgtcggtttt
      481 tttaaagaag gccacagtgt tccctaaggg ttgtgagagg agttcatccc attgaactgg
      541 tcagcaagat atcattagct tgttgtgtac atgaaatcca ggggttagag caccaagcgt
      601 cacaagccag tttctttacc tccttgagct gatcagagga tcagagtatc aaggaaggat
      661 tagcactgac ttgggatttg tgtgattggt taatttattg cggcgatggc aggcctttca
      721 tctatggcaa catttaatca gcacggccat ggaggctatt acgggttagc tcttttctca
      781 agtcagccag ggctgcacca tcagccctat cacaattccc ctgaaatttc caaattatct
      841 ggaacaggct ttagcctcac agtaataaaa attagaagag attcctgata gcactggtgg
      901 aa
//
LOCUS       KCLA01000093             932 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1482upu ultra-conserved element locus uce-450,
            sequence.
ACCESSION   KCLA01000093
VERSION     KCLA01000093.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1482upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>932
                     /note="ultra-conserved element locus uce-450"
BASE COUNT          252 a          256 c          205 g          219 t
ORIGIN      
        1 cctccctggc tctccccaga gcatccctga gctccatcac gccttgccac agggcaagga
       61 ccgcgtggat ccgggagtga tgctctggca gacaaagctg gggcagtccg tgtaaaccct
      121 tgaagtcccg gaccccagag cgttgtcaca tctctgcccg caggagagga gttggcctcc
      181 agtccactca cacaaactta gatgcttctt acgagatttt aacccaggta agaaagtctg
      241 gcggctccaa accgagcgcc ggctcttgcc accgtttctc agcaaagatt tagcacatcc
      301 tgccccttcc ccccacaggg ttatttcatc catacttttt ttttttaaat gcttcctagt
      361 caaacttgaa tatgcaatga agctccagag ctttgtggcg gaaatataat taaactggtg
      421 aaagatgtaa aagatgaaga atggggatga catcaggccg atttcacact tggcactcgg
      481 atggctgggc ccaagccgtg ctcttgccac gcaacacaga tcaaagtgca ctgccactgc
      541 taaaaaggca aaaggggact taagtatgct aatccccagg acaaatatat tttaatcttg
      601 ttagaataca agttaatgct gcagctcagt ggctgaactt tgtcagagtg tagagatcca
      661 cttttacttt agctctgaat gaggtagacc tcctggttta ttcatacttc ataaaagtaa
      721 agttactaaa tgagcctcct cgcagctcac ctagaggctc ctttagatga accaacaaaa
      781 acccccagtg actccgctgt ctgaagcaat ttggccttcc cagcaaaagc acggaaggct
      841 cgggaagacc ccagcatctt ctcttcagaa aaggacccct tcacgtcgag catccgaaaa
      901 tgcttgcaac cccagcaccc cagaactggt gc
//
LOCUS       KCLA01000094             307 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1497upu ultra-conserved element locus uce-2995,
            sequence.
ACCESSION   KCLA01000094
VERSION     KCLA01000094.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 307)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 307)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1497upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>307
                     /note="ultra-conserved element locus uce-2995"
BASE COUNT          103 a           51 c           84 g           69 t
ORIGIN      
        1 aaacagctaa ataaaacaaa agaagtgtga caggcgagca ggtcgactgt gtgagagaac
       61 acgtgcagag tatacctcag aaacactata ggtggatgag cacgaaggga gccgagcctg
      121 gttgtgcagt ggggaaaaga aaacactgtt aaaaaagaaa tggtggcaca gtaagggtct
      181 cagacggttt tctgtatagg tggttccagc actgagatag tagcaagggg atcgttacgt
      241 ttccatgacc agctttttca gaatctccaa atttatgcct tttaaggtgg aagcttctta
      301 aaagaaa
//
LOCUS       KCLA01000095             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1513upu ultra-conserved element locus uce-1787,
            sequence.
ACCESSION   KCLA01000095
VERSION     KCLA01000095.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1513upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-1787"
BASE COUNT          197 a          129 c          133 g          203 t
ORIGIN      
        1 tatagttttc ttaatcccta aagcagagga ggcaaatatt catttaaaac ccaataacaa
       61 ttaaaatccc caataacaat taaaacccac aacaagcaac tgctcgagct ttgtttattg
      121 cacgcataaa taatcatact tcaatgaaca tgttagcatc tatgatctcc tcccagatta
      181 aggttgcctc gagactgctt gctctggcta ctgtaaatgt gacatgaatt acgctcagga
      241 aaatgtgtct tacatgccgg gtttggagta aattattttc ttctaatata cctacacaac
      301 tgtcacaagg aattacactg cagatttagt gatgttaagt gtcaattgta atttggtgac
      361 agccatttta ttggctatgc atattgctct gtgaggacct gcctctcagt atggaggcca
      421 ccgtatcatt aaaaaccagt gatccttcac tgatgacata atttgactgg cagagagagg
      481 agcagtgagg ggcttgcttc cacctgcatg gaatctgctg tgtgtcagag atgaatttgc
      541 cttcaaatta gaaacagcac agcagactgg tggctgtgat tttgcttgat ttcttttaag
      601 gactttcact ggaatggttg ctgagcagct gataggagtc tgtttaatat gtcaaacata
      661 ta
//
LOCUS       KCLA01000096             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1529upu ultra-conserved element locus uce-2294,
            sequence.
ACCESSION   KCLA01000096
VERSION     KCLA01000096.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1529upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-2294"
BASE COUNT          271 a          187 c          152 g          346 t
ORIGIN      
        1 agtataaaaa ttgagaattt gtctgctttc tccagtgggt ctcctagaag aaaatatgac
       61 ctgtctgcta gtaacttaat attgttgtgt ctacaatagc atcaatagta ctaactaacc
      121 atatattctg tcattgtaac tctcctgtga ggatgaaatg ggcaaatatt tatacatatt
      181 acattttctt tatatatttg tgttttgcct attttgaaaa ttaaaatata aacattctgg
      241 taaaaaaatc tgttctcccc gtcatgccac agagtcaaag ccaatcactt ttgctttatt
      301 tgatatggca tgtctatgca tggataaaat acattaaagg tctttgtttt actgtatcat
      361 gaaattaaaa agcatgcagt ctctgtaatt acattgtcct ttgccgtctc tttaaaagag
      421 aaaaagactg tgttcaaatt ttccccctgt tttatttgca ccctattaac aactgttact
      481 agagctttaa ttatgcccct gtgattgcag agatgcggct gacttgtgtc attttcctcc
      541 caggggatgc tttataatta ccagcatcca tcgtggctgc ctgtaagctg atgctttttt
      601 attaccagtt caataatcac tgcatccttg tgaacatctg ctctacaagc catgcatcgg
      661 aggtcccagt gcctgtcact cgatgctccc ttgctgtggc gacccttttg ccctcacctt
      721 cagtttatat ctaatttgct tagcagaagc ttcatccaga ttgcctcaca ggaacacaat
      781 taatggtcca gatttgcaaa caaagaaatt ttcctccttt tttttttctt tttcgtctta
      841 ttatcttaat gtcatatcct ataatttgta ttcacagcag ggtgaatcaa tataaattca
      901 aagaaaaata tattatttgg ttggttatct agctttataa tgaaaagtac tagtga
//
LOCUS       KCLA01000097             302 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1543upu ultra-conserved element locus uce-3715,
            sequence.
ACCESSION   KCLA01000097
VERSION     KCLA01000097.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 302)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 302)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..302
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1543upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>302
                     /note="ultra-conserved element locus uce-3715"
BASE COUNT           86 a           66 c           52 g           98 t
ORIGIN      
        1 acctcatcag cttcctcatc ttcaatcagt ctctacggcc cttagttgct tgttgttcaa
       61 gctgtgtgtc acagccagtc acaacagtta cttcaagcaa attttcacac tctttggctc
      121 aaactgctgg cagcattcct aaagactctg aggaaataat tccacaaagt ggcataaatt
      181 aatgtgacta attaacatga tgttaattat ttgtaaattg tatgtttgga tacacattac
      241 ttgagaggca tatgttacgt tcagtgttta ctgaaacaag cgactgctaa tcgcatctcc
      301 tg
//
LOCUS       KCLA01000098            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1559upu ultra-conserved element locus uce-2874,
            sequence.
ACCESSION   KCLA01000098
VERSION     KCLA01000098.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1559upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-2874"
BASE COUNT          315 a          190 c          183 g          333 t
ORIGIN      
        1 agcttacttt taaaagcttg aaaaaagtca cgacttttat caatacaaaa caaattaatc
       61 agtaaatatt taaaatttat gaggtatttc tatgtgaaaa caataatgct aaataagctg
      121 attcaggcag ttctaggaaa agctttagcc gaaaagctgc atttacaatc tatcctaaaa
      181 acaggcagaa cacagcatca agccaagcat tagctcaatt aaagaaaaga gggaaaaaat
      241 gaaatccctt ttcagcttaa taacttgtta gttcttgaca agtgcaacaa cacaacaata
      301 agccagtcaa aatgagtttt taaagcgagg ttatgccctt cgtgttgtgt tatcacagtg
      361 gcagatcaaa ctgctgactt ggactctttc tgctagcagt gctgatgctg cctctatgaa
      421 gctgctgtca cagaatagtc atggtacctg ctcttgccta tagaaaagca ctgaattgaa
      481 ctcgaagtag tgtctttgtg atatcttttc aacaagtcat gtcccattca gcctgctagt
      541 ttatctctgt caggctagag gctcaagtgg tttgcatgag ctgtcaggga caggtacacc
      601 aacctgcgcg gtgctaagga ggtaatgcat ctttcgggct tggtatttct tttccttttc
      661 tgtcttctct aggtttttcc ttttctcttc attttccttc atttctgtgt attcttggag
      721 ttcactcctg taataaaata agcctgctaa ttatattgca acaatagaaa gtttgctaat
      781 gttttctttt actttaaccc ttttatagct tcttttgctg ttgtgttagc agtatactga
      841 cagcagtgga atgcaaaatt actgttcatt cagttccaca gcagcagaat actacacaga
      901 tataactgtg aagaaattgg attaaagtga taaaacccat gaatggaaat tagttcagat
      961 agcttacact ttcgaagatt atgccaacat ttttatattt acagcttgat aagataacat
     1021 t
//
LOCUS       KCLA01000099             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1573upu ultra-conserved element locus uce-1538,
            sequence.
ACCESSION   KCLA01000099
VERSION     KCLA01000099.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1573upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-1538"
BASE COUNT          170 a          134 c          110 g          228 t
ORIGIN      
        1 gtatcatggc cattgttaat tcccctagca actctgctct taggaaaaca aatggcattg
       61 caggacagtg aggatctatc agcaggtatg gggttctttg agctgccttc taatgcagca
      121 acctttcatc cctctctcta agatttacct ttaacctaga atctttcacc cattatctat
      181 aatgtataat tataaataca ttgtagtctt gagtaagtac aattaaaaag ggtaattcgt
      241 ttccctccct ctctcccatc ctcccaccca agtccttagg tttaattttc atgattatgt
      301 tagattatga gtcattttaa atcatggtat ccagtagaga ctactcctac tctgcagctc
      361 ttttcaacag ttgtttatgg tagtttcagc ctctttctgc ctctctgagg ctctttattt
      421 ttaaagcaag gcagacaagg cctaaaatta ttccattaaa gaggtgcaat ttttgtaatg
      481 ggacttagag tgctctgcag aagtgcaggc aagtttcttc aatatcctga gcattattcg
      541 ctcatttagt taaatgatgt ttctaattcc ctggtaatta catgtaatga ggcactcttt
      601 ctcttcttga tgagacttta gcctaatatg agatgtcgta tt
//
LOCUS       KCLA01000100             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1602upu ultra-conserved element locus uce-4494,
            sequence.
ACCESSION   KCLA01000100
VERSION     KCLA01000100.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1602upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-4494"
BASE COUNT          306 a          153 c          214 g          288 t
ORIGIN      
        1 aatttgacct gaaagttggg gaagataatg ggagttcatc atgggagaca aaccggtgca
       61 gcccattcac tgccttcaga taaggagaac ttgcaatttc aaagctggta cttggtgttg
      121 atcagggtag caaaaaacca gacagacgat attagattaa gctgtggttt cagtgtgagt
      181 gggttttgga agcttaaaga gttgcaggaa taaataagac tccactaaat gttgaagttg
      241 cttacaaaat cttattagta ttaattatta ttgaagatct ttattaatac ctttgtcaat
      301 cagtgttttt aagcatttga gttgcatgct gcaggcagtg ctggttttat cttaaaggaa
      361 acataagtgt tattttaaaa ctaaaaagtg tacaggtctt ttctgcaaga tgtaaacgca
      421 agggatttta aaactttagg ttgaaacctt cacctccggg aagaatctct gatgtgttca
      481 gaacatggaa gattggaaat caggaccagt ttgtatgtca ggaactccct ggtgttgtca
      541 gaacttcaaa tgacccaaca gcctgcaaat gtcacattta aaattctgtc ttcatgcctg
      601 actctcagca taaatgaatt aaacagcaga gcaggcagcc agtcaatatg ttcttaacag
      661 tgagagtgag caatgaaaca gtttgggggt tgtttggaat cagtaaatag aaagtgcatg
      721 gaatggctca cctagaggaa aatctcaaat aggaaacaga attaaccttt aagatggtcg
      781 accagacaaa atgtcatagt aatattttta caacattagg tgggtaatag ccacaggggt
      841 tcatttgtct gctgtgttat gctaccatag catactgtgc tgtggaaatg caaaattctg
      901 tttatatgta ctcttgtctc tttgctataa gaaatttacc agcagtatag agctgtggtc
      961 c
//
LOCUS       KCLA01000101             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1618upu ultra-conserved element locus uce-4629,
            sequence.
ACCESSION   KCLA01000101
VERSION     KCLA01000101.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1618upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-4629"
BASE COUNT          163 a          119 c          137 g          183 t
ORIGIN      
        1 agcatccaca gaaatagaac catctacttc tttgaaacca gctctccttt ccttcactgc
       61 ttgccctttt acaagctgag taatgtctaa catttcagta ctactgtatt ttgttgaaat
      121 ttattgcatt gtgatggact ctacgtagcc cctctgcctg aagggcgctt gtggtgccac
      181 ctaatttctc gttcttcaag gttaagcctg ctgccaggta ccagttcatt tattcaaagg
      241 ttagaaagtc cgtggaagtg ttgtctagcg ttgactttat tttaggagca aacataaaca
      301 cgaagaaact ataatcctgg tgtaatgtag gaatctaatt aagactaatg aggcaacatt
      361 aaatttaatg tatgatgcat tttatatgcc ttaccattag agctgcagca agctgttcat
      421 cagagcatcg aactttggtg aataagcccc tcaaggcgtt gttaaacgat ctgggctcag
      481 gccttctcct gcccattaga ttgtgttggg cttgcaaaga tctagatata aacggaaatg
      541 tctgtgtgtg acacccttga ggaggttggg gcagaaggag gagggtgaag ggtaatggct
      601 ga
//
LOCUS       KCLA01000102             933 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1634upu ultra-conserved element locus uce-231,
            sequence.
ACCESSION   KCLA01000102
VERSION     KCLA01000102.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 933)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 933)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1634upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>933
                     /note="ultra-conserved element locus uce-231"
BASE COUNT          340 a          147 c          158 g          288 t
ORIGIN      
        1 gctcagttgg gtcgtctgtt actgccaaca aaaaaatgga aaaaggagtg agttttgatt
       61 tcagttatgt gcatagaaat ctcagtaata ctatttaatt tacaaaattc actacagatt
      121 tacaccgctg ctactgaaaa tcaaaatctg gtccattgtc ttagcaaaat atgccaagtc
      181 aatatcagtt cattacagag agggagagag aaaaggaatg agaaagaaaa caaggatttc
      241 gttagcaatg cattctgtag tataaaagat aaaaaggaat atccaattaa cacaccacta
      301 taattgcttg cagacattct tttttattta aagatgaaat agctaagagt tctcatcaaa
      361 actagggtca cagcctacat attaaatgaa agaaattgat tgggctttat tacaccctga
      421 ctactgcaaa tgtgcctcaa tcactgattg ctataaattt attcttataa actactaatt
      481 gcccaagtca taatggtaac aatggtataa tgaaattatc ttgatcaagc tgatgcacaa
      541 attttgcttg acaacatgag cagtgtgaga aaaaagaaaa gaagacatgc atacaaatac
      601 ataatgtttc attaaaatta aaaccaatgt taaaacaact gttctctgaa gtatacaaaa
      661 ttctggatta gaatggcttc cgttagaaaa atcatttaag aagacaggca tttacattta
      721 taataaaatg atcttgcatt ttttatttgt cttgaaaatt aatgacttac ttaatcacat
      781 ttgatcaaag gagataagtt gatgtagtca tgtgtttctg attgcattaa gcctgatcca
      841 aagtggcatg atggatattt aatagtcttg ctgtccctct atatcttgtc accatttctc
      901 gatatgcatg gatactggag agcacagcgc tgc
//
LOCUS       KCLA01000103             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1649upu ultra-conserved element locus uce-47,
            sequence.
ACCESSION   KCLA01000103
VERSION     KCLA01000103.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-47"
BASE COUNT          202 a          177 c          126 g          198 t
ORIGIN      
        1 atgcaaatga cagaatacga gaagataatg ctgaggatgc tgtcaacgcg ccttactgac
       61 tcctgtcaaa atattttacc tagtagcttt ataacccatc atttttgagc tacaactcag
      121 cattttgaca ccattttgac aggcacctta caatacctag tttgatcaat gttaaaaatg
      181 tttggtacga gaagtagcca aaactgtatt tttccaaaca gcaaccagag caagtttaac
      241 aggcaggttc atcactggcc cacagggggt gtgttgtttt tctgtaacaa cttgtaagcc
      301 attgactact tgtgccatgc actctaaacc ccatctataa tatcctaagc cattgtttgc
      361 tttactctcc actgtgtctt ctgccttacc ccccccaaaa aaggcaagat ttgattatct
      421 ccgctgcatc agccaagaca gcaacaccag ctgttctcat tgtgcagcct cttcctcacg
      481 gcctacatgt taataacctg atcattccat tttctccttc aactgccggc tgcagcacag
      541 tgaagagaca aaaacccagg cccatctgca gcagctgtag gcactgaact gtgaagccac
      601 tagggattta taaactaatc tgtaacacaa cactgccttg tttttacaag tgagaggcca
      661 catttgtgca gacctgatct tttcttgcaa taaactagga gga
//
LOCUS       KCLA01000104             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1664upu ultra-conserved element locus uce-2870,
            sequence.
ACCESSION   KCLA01000104
VERSION     KCLA01000104.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-2870"
BASE COUNT          227 a          154 c          168 g          246 t
ORIGIN      
        1 ctttaaagcc tgatagagaa aacccttctt ccagcagagc tcaaaggctg caatagtatc
       61 tgtcgtttgc agagcctctc gacttgtgtg ggggctagtt ttcatatggt ggaaaagtca
      121 ctgggtaatt gagacattat cactttgaaa aggacttcaa tcacatgatc agtctataaa
      181 ttagatttta ctgagtgcaa gctggggtgg tggcacaggc tccctcgact tgactcactt
      241 gcttcgctga ggttttgcat ggtggaaact ttgaagaata aatacttcat tttctgacaa
      301 atacagacta agaattaatc ttacccaatt atcctaagct ctgcagatgc taaacatgta
      361 cgttcattga acatacaggg gttttgttta caacaggcat taaacagagt gaatgtcaga
      421 gtaagaagag gtggacttaa tgggttaaaa actgtgtaaa tgttactcta gttaaattac
      481 agcttgttgt tcagatgaat actctccact tctcatatag ctttaaatta tggacaaatg
      541 cttgcaattg tgcactacct acattgtggc tgcctgttcc caggcttcat caaccctagc
      601 tgtccaatgg gattactgta agctttcacg gcagtctgcc agccactgat cagaaattca
      661 tatccctgga tgttagattg ctctctttat tccatccttg tgatggctgt gattgctgtc
      721 atggtgttag gttagaaatt agcattttgt ggcccaaatt ttgccatcca gaacataatc
      781 agaaaaagag agaag
//
LOCUS       KCLA01000105             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1694upu ultra-conserved element locus uce-4553,
            sequence.
ACCESSION   KCLA01000105
VERSION     KCLA01000105.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1694upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-4553"
BASE COUNT          253 a          181 c          152 g          306 t
ORIGIN      
        1 atccaaactg gaacacctta tcattaaaga tagtaagaaa aggatattat ggatttatgg
       61 ttataatatt tctttgttac acttataatt gaatttggat tatctttttt ctaccccttc
      121 tcctctcttt cagactctgc cgtatcatat gaacacacag gtcctacatt atgctgtgtt
      181 tagtctcctt tggttggctc ttttcatcct gtcagtggct tgtaaactaa gacactgtaa
      241 acagagctgt tttagaaata taaggtttga taaaagcata tacttttgaa accactcagc
      301 aaaacgctca tcagaaaaga tctcatgctt cccacgtgca gtcaatatat cactttaact
      361 acagtgcatt taccctctgt ttatcatccc ttctgaagcc atgtggaata ctcatcttta
      421 atccctgtcg atagtatttc caaagtactt tacaagcttg gagtaatgca ctttaatgcc
      481 ttgcagcccc tgagctggta gcatatatga taccttaaat gtaacaatca aaggagcatg
      541 caggaatttg gtatttctgc tggcttgcag atgttcagta tccatgtcca gaaactataa
      601 tgtcaagttt agacaaaaag tgttcaaaat aaaataatgt ctcactgctc tgtgtcaaca
      661 cacccataat gtgagagagt attccctgac tgagcaccag tattaaatat cagttatttc
      721 ttcagtaaca ttttttgtgt gtgtgcccat gaataacctt gctcaagatt tatgtgatag
      781 agtgtatgtt tacagagcgc agagcatgtg gtattctcca ggtgctaagc tttgatctcc
      841 ttgaccttct atctattacg ttttctggtt ttcattgaca ccgacgctct tg
//
LOCUS       KCLA01000106             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1710upu ultra-conserved element locus uce-2879,
            sequence.
ACCESSION   KCLA01000106
VERSION     KCLA01000106.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-2879"
BASE COUNT          214 a          155 c          146 g          236 t
ORIGIN      
        1 aatccagaaa agattagcca cagcatttgt aggtgactcc catccacaca gtgcctcctc
       61 ctctggatgc ctaacctgat ggcactcacc tagatctgag aggattcaat aaatatattg
      121 agtgaaagca ttctgtttca aagctctaca tacccagtaa cccttgacca aagtcatttc
      181 cctttgcata gctctagtct tgacgtagag tagtatccat gacacataag agttggcatc
      241 tctttgcaaa actgacctct tgtttacaat tttatactaa tcaccatact gatcctccag
      301 tattgaattt atttgctttt gcagtgccct actctctact gtctgaatat taaatgtgtt
      361 tgttttccca gagggctaga gaacattgga caaaagggtt cagcaggaga gagtgaaata
      421 aaaagaggtt gtgagtcttt aaccttgagc ctgaaatgaa tgtgaaccaa actccagata
      481 cttggcttgt atgaagccag gtaaacattc gagtataagc ccatacacta ccaaccacag
      541 tacatctggt gatgcttagc agacctcgtg tattttgcct agatggtggt gcgtaggagt
      601 gagattctgc acttcagcct tttcttctga tgggaaaaat ttgtagcatc taaaattcta
      661 tttcttttat ttttcttgcc tgatgcagta taataaatct gacttttgag atgggttgaa
      721 actgaagagt tttttctatt acagctccgg a
//
LOCUS       KCLA01000107             919 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1726upu ultra-conserved element locus uce-2933,
            sequence.
ACCESSION   KCLA01000107
VERSION     KCLA01000107.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>919
                     /note="ultra-conserved element locus uce-2933"
BASE COUNT          272 a          226 c          151 g          270 t
ORIGIN      
        1 aactcctgct aaagccattt tttgctaccc aattgcaggc acaccccaat aatgactacg
       61 gttttttaac tccagtaatt tctagagacc cagcccattc ttctgggctc ctctaaacac
      121 aatctcatga tgaattcatg ctttaggaca aggcagagtg cacatcgaaa attctcagcc
      181 gttcagaggt acaaaaagca gtgatcttag cctgaaacaa ttgtactgaa gtgaagcact
      241 actcttcttt cctagatcta cttttaagat ccctgtcaaa acagcccttc aaacacattt
      301 gattgggttg gggctcatca tgctgtcacc aactcacttt tcattaggct gttgctctct
      361 gttagcctag ccaagcagaa gaactcaaac acatgcacaa attaaatcga catccaaact
      421 ccaccaatat acaaagcaat ttaaatgata ttcattagag cgatgacaag tcctgatgag
      481 gctttcagga gcggagtcct tcagcttctg ccgacttggt ttcatggtca ctgaggcgta
      541 actgcagtga ctgtacctcc agtttagaaa aaaagcatga gaatatgact ccgcttcctg
      601 acacacctac ctcattctcc ctcttgcaca ggtttacatc tgagcacagg cttcaggctt
      661 ctctcacagt tcctcacagg ctttatattg cagacacgct ttagcaaatc tccttccttt
      721 ccctaccacc tacaaatgtg ccaattaaaa agaattccat tttcaagtaa tttcatttca
      781 cttggttaga aaggtcacta actcacaatt atgatggcta taaacatgtc cccagtttcc
      841 taccgtgcaa gaatgaatgt gatatgctga agcttaataa agtatttttc actgttaatt
      901 tatactaaag ttttaaagt
//
LOCUS       KCLA01000108             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1740upu ultra-conserved element locus uce-5083,
            sequence.
ACCESSION   KCLA01000108
VERSION     KCLA01000108.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-5083"
BASE COUNT          180 a           86 c           90 g          108 t
ORIGIN      
        1 tgaacctaaa tgtagcattt ttattgactt cttagaaacc aaataacctg gcatattagt
       61 gtgtgcattc tgcaacagac attcagcccc attgtactac ttagaagaga ataaaaagaa
      121 accctactgt ttgaaatcca gcggaacatc cccacaacag agcacaactg ttccctcatg
      181 catgaatggg aaggagatga aagaaaagat ggacttctga ggtacagcaa aaaacaaaga
      241 caacaaaagt gctgatcatg agggaatgac acaactcatt gctgcaaaaa ggatgagaga
      301 aaggagctca aacaatggtg cagacagcta agtgacatgt agaagaattg aaaaatctac
      361 agaagtgtct tttctttcca cacttgacga gaaacaatta aatgttggta catctgtcat
      421 aaaaaagata attgaaacct gttaccatca ctatagatgg taac
//
LOCUS       KCLA01000109             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1756upu ultra-conserved element locus uce-786,
            sequence.
ACCESSION   KCLA01000109
VERSION     KCLA01000109.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-786"
BASE COUNT          134 a           78 c           64 g          147 t
ORIGIN      
        1 tttctctgtt gccctgtgta ctcctgaata acgacagggt gtaactagtg actttgggga
       61 gcatttgtga gtgcccatgt atttactggg aaggactcaa aatatttcca gttcaactct
      121 agacttcaca tttcgagaaa aaaaaatcat gtttctaccg catattttat taagcccttt
      181 aggtcctttt acaagagagg aaataccaat taacgtataa tttagcagaa caaaatatta
      241 tcccatttca accagtaccc acttccttga agtttattca agcattaata accatttaat
      301 gcaatttaac tacactgagg tatccgttac attaatatca tatatccatc aggaaattag
      361 agttttgtct ctatgaattt tgtattacaa gaaagtcttg ataattttat tctgcacttt
      421 atg
//
LOCUS       KCLA01000110             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1772upu ultra-conserved element locus uce-6530,
            sequence.
ACCESSION   KCLA01000110
VERSION     KCLA01000110.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-6530"
BASE COUNT          274 a          204 c          182 g          241 t
ORIGIN      
        1 tgaccatatg ctgtgactgt gagagctgtg cctgtttaaa tgtaaattcc ctctgccccg
       61 gcataaaaga ggatctgttt aatagggaat gagggcgctt tggcaggata tgcactgctt
      121 caggtaagcc agaataaaca gtagcattga ttaaaaggag ccccctattc tgcacctgtc
      181 atgttcacct cctctgccac aaaggcccgg ctggtttatt tacctgtaga gctgttataa
      241 tattttgctt tctaaagaga tttggaagcc acctgccata cctctggctt ttctttcaca
      301 accacgctgg ccgggctcaa gtgtgcgagc ccattgttct gctccgccgc atggaaaaga
      361 agatgaatcc agaagcacgg gatccaaaca gaaattatta ttgatttaat cacataatca
      421 gcagcaaaca cttcaggcta agatagcaaa tccataacag cctgcccaca taaccaccct
      481 tacaaattta ccagcaaacc gctgcgcaca cttagcaaac aagaagagca agggtcacct
      541 tcacttggcg gcaaaatatt gacattccta aagcttaaat atgttttgag ttaagtgtta
      601 tcaatcagtg ataagagttg aatgtctgtt aaacataact acattggcag aaggattata
      661 gaatgctttc ttgccataat ctagaagcat ctttcagaca aaactctgct tgaaatcaat
      721 tgtgcacaag gagctgcctg ctgagcccca ttcagtgtca tacaaaagga gagagagtct
      781 ccctgtgatc tttaaccata accggttatc taatgagacc agggctttaa tttcttttca
      841 catcaaacat agaatcaatg ctctggattc aacaatgtgt gtaaacaggc tgggaagcca
      901 t
//
LOCUS       KCLA01000111             906 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1788upu ultra-conserved element locus uce-665,
            sequence.
ACCESSION   KCLA01000111
VERSION     KCLA01000111.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>906
                     /note="ultra-conserved element locus uce-665"
BASE COUNT          259 a          197 c          173 g          277 t
ORIGIN      
        1 ctaagaattt gccatattca atctttaggc tctgaaccca aatgcccttt gaaagtgaat
       61 ttatgatcac ttcatcacac tgtctattag ctcacttcta acaaatagga ttgagaaata
      121 tatggcagga actgcaacag cacatttcca actaatggtt aaaatgtcag ggcgataatg
      181 tacaagtgtg tctgccctca aacacaaaat caaacgcagc tttacaaggg ctgtcgccat
      241 tcccctttag ttaaagactt gcaagcttcc ttcttcccct ttgcagggct gcagtttgga
      301 agctgctgca tctcatcagg gctcagtttg ccagtgctgt actgtacttc attaggcagc
      361 tctatttaat ggtttcaaca aaagccatca ttttagccca actgccttga ctaaattaaa
      421 atttccaatc tctgttttag tgttctgcaa ctgatgtata cataagcaaa actggtcaac
      481 atctgccagg gggttggcca aaagttctgt aaagatgtac ttcacatttc tgaagcatgt
      541 gcaaagtaac aacgtactta tcctcctgag ggctctcatg attttacttc accatttgtt
      601 cagacacact ttagcagcat ataagccata cagttgattc tccccttggt tgcagtttta
      661 tctgtagtgt cattttgagt aattggggta tggtagctga tcaactttca ggtttctcat
      721 tggcagaaag ggactgtatt ggcaccaaga aagaatatga tgggtcctct tggtgcctga
      781 gcaagtgtcc ctcttttgca cttggctacc caaggccatt agaaaataag cttaataaag
      841 caactcagtg tatacatctt aactattccc agccaagggg atgcagctat agaagaaata
      901 ttttaa
//
LOCUS       KCLA01000112            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1803upu ultra-conserved element locus uce-54,
            sequence.
ACCESSION   KCLA01000112
VERSION     KCLA01000112.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-54"
BASE COUNT          283 a          229 c          181 g          351 t
ORIGIN      
        1 tgcaaccaga cagacttctc tgaccttaca gtttttattc tcaaagtact tccacatcca
       61 ctgtgaaaat actttctgtc tctgcacatg tattccatca gccatgttcc catttgtcat
      121 agcagagtga atgccctcat agcataatca gctttctggt tctaccatgc agacacaaaa
      181 acaccacagt gaattgtaga gttacatgtt ggtgcataag aaatcactgg atgtagtttt
      241 cacaactttg tgtttttgta ggtgacaagc atgttggatt tagtgagatt gtaagcatag
      301 ttatttacta gcagaagttg atgtttttct ctcctctatt tttacatttg aggctaaagt
      361 acaatttatg ttctgggtat catcttgtgg aagttctaaa tcacttcatg aggctttcag
      421 cctggcttat gtcatttatc catcagcact cagtccattt aatccaggtc tctcagctgt
      481 acagacctag ctcctgttgt gagtgatcgg cctgcttgag tgctcccagc ttctcctgtc
      541 acatcacatt tgcataaaag aggacggata accaaatttg agcacacaaa tgaaaatgct
      601 aagcgctgaa cctgtcacag ttgttgttca actaattgtg aaaaatttga tttgctggct
      661 tttcactgtt tatcatgtgg acccccttct caaatttgcc ttggcttcca cttctgtacg
      721 tgtagctttt aaactctcta cacaagcagc tcaccctggg gattacttac ctctcctacc
      781 agcttttaat gttggctcat ctacttgact aaattaggcc accatggcaa acaaacacat
      841 aattaaaaac ctgggaaaga catctgcagt tccacttctt aaattgattt tgcagtctat
      901 tactggtata tgcctttgca tactgccatt ttttcttgcc ctcctgtaaa ccctgaaaat
      961 gtctttattc tttattatat gtaagaggaa cgtatgttct ttcaaatgaa gacgattctc
     1021 ctcaaaaggg aatagtgaat aaaa
//
LOCUS       KCLA01000113             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1819upu ultra-conserved element locus uce-6512,
            sequence.
ACCESSION   KCLA01000113
VERSION     KCLA01000113.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-6512"
BASE COUNT          177 a          123 c          132 g          132 t
ORIGIN      
        1 aaataaaaga caaagacagg aacaaggaac tggacacaga gatcaactgt ggggtttccc
       61 atgcaagtga ctgtggggct ctcccaacaa cctagggagt gtggacatgc agagcatgca
      121 ggtaggatgt gcagatcgag gcatgcgctc ttcctctgcg ggggaaccat ggaggtgaca
      181 gcacagaaga gaaaaggcac ttacagttgc tctagagagg caagtccttt aaatgcttgc
      241 ctgtcaattg actggatttc attcttgtac aaatagctga aacaagaaac aatcagtaat
      301 attagtaaac aaatgagagc tacatggagg tggagaagaa gaattaagtt gacgtgaaga
      361 cagtttttca atgacatatt aggacaaaac aaaacctaaa cacacacaca gaaacattct
      421 ttgtccttga gacttcatcc caaatccttc ccagacagag aaacgtctga gatcctgcag
      481 gttctgaggc tgcgacccga acactctcgg gcttcccagt gctcactgtt attacttact
      541 gtttctttgc ccctcggttt cctt
//
LOCUS       KCLA01000114             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1834upu ultra-conserved element locus uce-2845,
            sequence.
ACCESSION   KCLA01000114
VERSION     KCLA01000114.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1834upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-2845"
BASE COUNT          261 a          131 c          156 g          222 t
ORIGIN      
        1 caggcgggaa tcttaacagc aaacaacctc ctgaaaagtt tgtatatggt gagaaaactg
       61 ctgctttcta catttaaaat taccacagga gttagcatac aggaaaggga aagcaataat
      121 accattgtga atgtttaatc aaggacaatt gccagaaaag ctcttctttt gccaataaca
      181 aacggatgtc tgtggcagtt atttctcatt ttaaataccc aatgtgatat tgtatttcag
      241 ctcaaagaac taaataagaa aagatgctgt aatctaatca taccacaatc caggtgacat
      301 ctgtactagg cagaattctg ttgttattct gctgtctagt tgccgttgct gagaatgatg
      361 aagtagcgga attacatttt cccattatta tttccagaca ctctctggca atggtttgtt
      421 gactctaata aagcttcaga caaagctgtc agcagaggaa atggcaggag gggagcaagg
      481 aacagcctcc acaacaatga atctaaagtc ccagtgatag gtagtgcatt tgctgataat
      541 atttaaaggg tgtgtttcag aatatatcat aaagctgcag ctgaaatcta tagggataaa
      601 aatattctat caagtaacag tgcttaagat tttgacaaac ataaacatat tacgaaggat
      661 taaggagtca gaagacttac ctgctatagt gttgaggaac atcaagtatt caaagttaga
      721 tatctcgcgt ctttgccagc gctgagtcat atttgaggat ttataaagct
//
LOCUS       KCLA01000115             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1850upu ultra-conserved element locus uce-4698,
            sequence.
ACCESSION   KCLA01000115
VERSION     KCLA01000115.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1850upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-4698"
BASE COUNT          110 a          212 c          167 g          130 t
ORIGIN      
        1 tcgcactgcc ggcgacggcc gggtatgggc ccgacgctcc agcgccatcc attttcaggg
       61 ctagttgatt cggcaggtga gttgttacac actccttagc ggcttccgac ttccatggcc
      121 accgtcctgc tgtctagatc aaccaacacc ttttctgggc tctgatgagc gtcggcatcg
      181 ggcgccttaa cccggcgttc ggttcatccc gcagcgccag ttctgcttac caaaagtggc
      241 ccactgggcg ctcgcattcc acggcgcggc tccacgccag cgagccggcc cccttaccca
      301 ttgaaagttt gagaataggt tgagatcgtt tcggccccaa gacctctaat cattcgcttt
      361 accgggtaaa actgccccaa agccgagcgc cagctatcct gagggaaact tcggagggaa
      421 ccagctacta gatggttcga ttagtctttc gcccctagac ccgggtcgga cgaccgattt
      481 gcacgtcagg accgctacgg acctccacca gagtttcctc tggcttcgcc ctgcccaggc
      541 atagttcacc atctttcggg tcctagcacg ggcgctcacg ctccacctcc ccggcccgcg
      601 ggcgcgggcg agacgggcc
//
LOCUS       KCLA01000116             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1866upu ultra-conserved element locus uce-6505,
            sequence.
ACCESSION   KCLA01000116
VERSION     KCLA01000116.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1866upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-6505"
BASE COUNT          165 a          110 c          108 g          135 t
ORIGIN      
        1 aaccccaaaa caaaggcccc gccagcgctt ttatttattt tgataatcct cctcctgctc
       61 cagagcgttt tgctgtcttt gtcaaagtga atgacaacaa tttggccaac tctctctgag
      121 ctgcactcaa cagtgacagg caaattatca gaggccctgc actccttatt atcagaggag
      181 aagtcatcag gaggacgtgc ggaggatccc tctcccctgt cactatttgt cagtgggaca
      241 agggccactg ctatgggtag ctgacaggta atttcaacaa taacaattac tcctattact
      301 ggtgtcataa acaattcgcc caaggcatga caataacaaa gctttataat tcaatgccat
      361 ataaataaat gccagcaggt aacaagtaat ttagctccaa tcaggacttg gccctggcat
      421 taatattgtt attgcaagaa aatggaaaat tgaaaaaatg caatatgtta atgaattaag
      481 aggagttcaa aggctactgg aaaggaggag tgattggg
//
LOCUS       KCLA01000117             950 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1882upu ultra-conserved element locus uce-5478,
            sequence.
ACCESSION   KCLA01000117
VERSION     KCLA01000117.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1882upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>950
                     /note="ultra-conserved element locus uce-5478"
BASE COUNT          241 a          216 c          155 g          338 t
ORIGIN      
        1 gaactacttg agcaaatgaa taagtcagcc cagtgagtct aaaataatac tgatctctat
       61 aaaatcatat ggacattgga tgctactctt aaccttgtta aagtcagtga tgcagagtag
      121 ccattgatgt cagtgattca ggctcacact tttccttaag ttcctcaccc agcagaccta
      181 cattttgtca aaggcttctc atgtagttgg gtaaatcaca tttctaagaa ctgttgtcat
      241 aaacaccctt ataagtattt gacctagtga caaaaaatca ttttagttga tattacttta
      301 tgtcagcaga taaataccag tacacaagaa ctgagttcag tctgtccaag cactgttgcc
      361 tttttgtgta ggagaccttt gagaactcat ctcagagcac ttagagacag cttttgctct
      421 gactcctgtc ttttgccctg gtgctccaag tctcttgcat atgcagctgc tgtacttgat
      481 ttcttctcct gctaatgatt ttctttaatg tgacccatgt cctgtgtcat tttttctagt
      541 tcatcatcac gggagtaaaa tgttacgttc ggaatcaaac tcttcaatta ccactcagcc
      601 tactataggt tggcaaaccc ctctctttgt ctcctcctcc tcttctcctc tctcttcatt
      661 tccttcccac gttatttata tatatttttt tattaatatg cttctcccat cacacttagc
      721 ttaatgtgtt cctacatggg ctggtgcttt gcaagctaat tttctttgac acgcttgaag
      781 agtgtttcaa atctagttgt caatcacact gacacaatta aatgctacta tgtcttgcat
      841 cgttcttgca gaacattctc ttatatgttt ctatgtgtgt gtgagtgcat agccacaaac
      901 cacctcatca tagtttggat tttgcgttca tcattgcatg ttgccgaact
//
LOCUS       KCLA01000118             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1897upu ultra-conserved element locus uce-6802,
            sequence.
ACCESSION   KCLA01000118
VERSION     KCLA01000118.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1897upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-6802"
BASE COUNT          175 a          245 c          220 g          149 t
ORIGIN      
        1 cctacagcgt tcacagctta gctctccaaa gagcgcatga gggaagacgg ctgctctcct
       61 gtcgggccgt gcgctctgtg tctgagagcc tcggtgccca ccccagatta aagcagcatg
      121 ttgctggagc actgggcctc caatgaagac gcctttcaac aacgcaaaac cactaatgag
      181 aaaacataga cagagggaga gccggccccc gacagccgcc ttcctccgct ccgcgcggct
      241 cccagggcca ccggcggcac cggcctgatg gaaggacagg tcggaggaag atcctggccg
      301 ctctggtggc caggaatcaa aagggaaggg gggaagagct cccgcctggc cgcagagcat
      361 gcatgcggcg agtgtgctgc atttttccag gctgggggga cctcctctcc caagcgttcc
      421 agtaattaac ctcactttct tggctggtgt taatttgttc caagtattcg ggctttagat
      481 ctaaccatgg gaacctcatt ccctgcagaa gccttgccaa ctgttactag acgttttacc
      541 acacacatgc aagccaaaaa cagcacagct aattacaccg ctccgctgcg agcccagcgg
      601 ctccgcacca ggcagcatcg ccccgatggg gccgccccgc cgtgccagcc accaccttga
      661 tgctccagta ccgagggtgt cagtactggg gttcagggct ttggcaccca ggggacttct
      721 ctgaataaaa atggggacgg gaggagcgat gtgaagcaga tgctcatctc ccagatatgc
      781 ctccctccc
//
LOCUS       KCLA01000119             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1913upu ultra-conserved element locus uce-388,
            sequence.
ACCESSION   KCLA01000119
VERSION     KCLA01000119.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1913upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-388"
BASE COUNT          260 a          118 c          187 g          276 t
ORIGIN      
        1 tgaaaagaaa tgataccttt tatttgaaaa tcttttgaaa atcaggatgt gggtaacaat
       61 gactatgttc aattagtagt ataacaaatt tgggataatc caaattgagc agaactatta
      121 accatgtgct tgatttgttc gcaatggagt tactgacttg aactagaatt tactagttct
      181 tgtcaagcct tggagcatct tctgtaaaga aggggatata ggtggagata acagtgaaaa
      241 gttacagcac ttttaagtct gctcagcaga gttttgatta ttttcttgat ggaatgaagg
      301 tagtgaatgt ttggggtctt tttaaatgca gtctaattgt gcagtggtat taagacagtg
      361 caactttaag ttttcatatg aaagtatgag ctttggtatg acagaatatc aaagtgaaaa
      421 ttaatgtccg ccacttgtat attgcctaga cgttacttta gagggaaaac aacaggagcg
      481 agacgaagcc atacatatgt taaattcaca tcagtaataa agattaagta gaagttaata
      541 gcatcccagt catgcttgtg gaggtaatct cctttctgaa aattcaaaat tagatttgga
      601 ggatcgaagc aaacaggggg tgagactttg gcgtaatatt ttaatcaaat tgtcatgaat
      661 gagtggatac aattaagaat tctgtcagtc acagtgctga gccccttttg ttagtcagct
      721 gttgtgaggg atgcactagg gcatcgtggg tagagattaa acttgacctt tcccaggatc
      781 ttcatttttg accctctggc taggctttgc ttgtcagatg gctattattt tattatttat
      841 t
//
LOCUS       KCLA01000120             932 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1929upu ultra-conserved element locus uce-4653,
            sequence.
ACCESSION   KCLA01000120
VERSION     KCLA01000120.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1929upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>932
                     /note="ultra-conserved element locus uce-4653"
BASE COUNT          291 a          244 c          147 g          250 t
ORIGIN      
        1 agactctaaa cagtaacggt attagtgaag aaacaggatt tttgtaagca aaatgctaac
       61 tcaataatca ccactacaca atatcattgc taacagattt aacctctgct atccattttc
      121 atttcagtgc agcctcttta cctgacacac tttccccata agaaccgcaa atgactcgta
      181 tccatctctg cccttcagca aaacatgcaa atgaccacaa atcaacttcc aactaatgaa
      241 atccgtctgg actctacaca tgtccccgta tcaccataat ggaagcagcc acaatgccag
      301 aacagctcta taaataatga cagctctcct ttcctcctgc atctccctgc atgcacaata
      361 agagttttgc taattcaatc agaatgaaaa caactgtcct ctcctcacta gcgttttttc
      421 tccctgcaat acatataata taggctgaga atgaaaaggt agggcttaca cagatatcag
      481 aattcttcag acgtcctcct ttggctcttt tcagaagcct gatccaggtg gccttcatta
      541 gccagacagc tcagttattg tccgcagctg cagcgcccgg cactgatctc atgaaacatg
      601 tgcacactga gcaccgcaga atcactgctc ctttcctatc catgctctgc tccgagagcc
      661 ttccttctcg tccctctgcc tttcaagctt gcagcctcac tgtttccaag tgttctactg
      721 caattaaatt ctcaatgttt ctcatgccag ttaaaaaaaa aaaaaaaaag ccaagaagcc
      781 aaaacaaacg cagatcaccc ccaaaaatct caattgaaat gatagaaaaa gaagaagaaa
      841 caggcttcag gtaaatgttg tgggatgctt cagttgatca taaactgaga tcaatcgcag
      901 aagaaaacct agggctcttt ctgttttttt tt
//
LOCUS       KCLA01000121             907 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1943upu ultra-conserved element locus uce-708,
            sequence.
ACCESSION   KCLA01000121
VERSION     KCLA01000121.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1943upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>907
                     /note="ultra-conserved element locus uce-708"
BASE COUNT          265 a          184 c          173 g          285 t
ORIGIN      
        1 gatttcagcc aagcgttttg cttagttaaa ctccggctga tgccacgacg cacggaacat
       61 ccctccaaaa aaaagtgcaa acccgacgcg tcgtgccatc cctggcagca gcgttttgct
      121 gcagagagga ggggggaaag atactgaaag cacggattga ttttcaaatt acctcaatat
      181 tttgaaaaca ttttcacctg catgctgaga atgctaagaa taggcaggaa ggcaattgtg
      241 catttgcaca gcctccactg cattcattta taaattacct catcactgac tgaaattaac
      301 actgattctt acaggcaatt tctcaatttc caatgctaat tacatttttt ttacttttaa
      361 attctgtacc acctgttttg ggcaagacat cttaggcagc gcgaccgcat ttaatcacaa
      421 ttttaattaa ccgccctgta gatgtgaaaa agaagcaatt ataatgtaga tgaatgatga
      481 tttttctgca ttaaattgtt ttgtttccct ggtatgttga ttgtaacaca gcacacaaat
      541 acagtaactg tacaattttt ttctattgta atttagtaat tgtttttgga aaaccagttt
      601 gggaatgagt gacttcatct gtttacaaat tgattgatac tgttaactcc ctgattgctg
      661 cagcatacat tttgtattgc acagcctagc ataaaatata attaggcatg cacaggcttt
      721 gcagcaccat tttggaatct gaaaatcaac tgtaaccaaa gtgtgttttc cttgagcatc
      781 ccactatcag ccggggctga tgatacgata atcaacaaac aatgggtttt ccccatccca
      841 ctgctagtag aagcccttgg atttaatctg atagtctcac ggcgtaagtt tggggttggg
      901 atttctt
//
LOCUS       KCLA01000122             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1959upu ultra-conserved element locus uce-3061,
            sequence.
ACCESSION   KCLA01000122
VERSION     KCLA01000122.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1959upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-3061"
BASE COUNT          180 a          169 c          162 g          227 t
ORIGIN      
        1 tttttgtctg gacccaggca gtttgactta gtccacctct cagtgccagt tacaggtagc
       61 attggaaaaa cagcccttac caggatgacc cgttccgtat ggctctgcgc tccctctggc
      121 tgccagcttc taatctcatg tcagccaaat tccgccgtag tgtttgttga tgaaatagcc
      181 ttaggttgtc ctctccggat aaacggcagc cagtgcctcc ctatcttgca tcttcacccc
      241 ggaagaagct gagagtaaca gctgttgtaa aagtatcgac agttgcccaa gtgggcttga
      301 gccgtcacct tgctgtgtct taccctgctg tattttgttc tcttccacca gctgatctac
      361 atgatggcta ctacatataa ctatgctgtt ttgaagttta agagtcggga agattgctgc
      421 actaaattct aaattgtata agctccgtaa agagctgcat tgcgtagctt gaaataccac
      481 tgacacccta ggctaagagt ctagctttct gaattttgtt tcagtaattg taaatagctt
      541 cagtaagcgc catttagctt ctcagattaa taaagtcact tcttgtatct gaactgtgat
      601 gtggatgaga tctggctatt ctttcatgtc gagaggattc agttactgta ggggtgttga
      661 tacatcgtcc gtccgagatg ggatggttcc atttcttaac agacatctca aaaacaaata
      721 ctggaacagt tcagggtc
//
LOCUS       KCLA01000123             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1973upu ultra-conserved element locus uce-5883,
            sequence.
ACCESSION   KCLA01000123
VERSION     KCLA01000123.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1973upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-5883"
BASE COUNT           70 a          145 c          123 g           53 t
ORIGIN      
        1 gcctcccgcc tccgtgtcgc cccgcaggag gatgttcccg gtgctgaagg tgagcgtgtc
       61 ggggctggac cccaacgcca tgtactcctt cctgctggac ttcgtggcgg ccgacgggca
      121 ccgctggaag tacgtgaacg gcgagtgggt gccaggcggc aagcccgagc cgcaggcgcc
      181 cagctgcgtc tacatccacc ccgactcgcc caacttcgga gcccactgga tgaaggcacc
      241 cgtctccttc agcaaagtca aactcaccaa caagctcaac ggcggcgggc aggtaagcac
      301 cggcaccggg gtcggcaccg gcccacagcg ctccggcact gctgggaggg accgacccgt
      361 cgccagtccc ggcagagcta ctcacagccc c
//
LOCUS       KCLA01000124            1027 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 1987upu ultra-conserved element locus uce-2476,
            sequence.
ACCESSION   KCLA01000124
VERSION     KCLA01000124.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="1987upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1027
                     /note="ultra-conserved element locus uce-2476"
BASE COUNT          325 a          206 c          173 g          323 t
ORIGIN      
        1 gtagccagga tttttattgg gaaataagaa agaagcagaa ttataaaata ggtgtggtgg
       61 tattaaagct ctcacttgaa agttcaggcc ataattggaa caggatactt acactggggg
      121 gctgcttgcc catgatttgt tttctccatt aaaagactag tatttgaaag ttttgtggat
      181 acctcactag tagaatgatg gtattgtttc agcattagtt gtcataagaa aacacgaaac
      241 aagagttttg ccttccactt ctgacccaaa tatttttttc atcttcattg aacttattta
      301 acaacaatgc agagaatcag attgttgagc aaagctattc agtggtcaaa tgtatgttgt
      361 cagagagttc atgaaaaagt cattacctct ctccccctct tctttcactg tcaggcagaa
      421 tcatgtcata aatacagcca cttgtctagc aggatatcaa tctatccagg tatcacccac
      481 ttcctggctc tggccatatg tttctgttat ttatgtcaag aaaatagcat ttacacaacc
      541 gctgctagtt gtttacagaa gtttaactcc tgtgatatag ccccgcttgt gttgcaagct
      601 tttagcccat agataataca tgagattgta cattttaaaa tatgctacca catgcatgac
      661 agaataaaca cagaactgaa ctgacagcac catctgccaa atacagttga tgtcaaggga
      721 atggtctctg cacaatattc tgctactccc ccatgagata ttttttctca tgctataact
      781 acactaaatt caacttgttt ctttagtact caaattgtta aaaatctcac aagcagaagg
      841 cattcaggcc tcctaacaat cactgcacag gaatagtgga aattcaacaa ttctcaccaa
      901 cgtttttctt gttcttacac agtgttgttt acatacttac accagaaata aacctgaaag
      961 taatgtatat atgacaccta gttactcagt gctctgaagt catggaaaat tcataacatt
     1021 aaacttt
//
LOCUS       KCLA01000125            1154 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2002upu ultra-conserved element locus uce-1804,
            sequence.
ACCESSION   KCLA01000125
VERSION     KCLA01000125.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1154)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1154)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1154
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2002upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1154
                     /note="ultra-conserved element locus uce-1804"
BASE COUNT          314 a          259 c          248 g          333 t
ORIGIN      
        1 aatgcggatg cggaagaatc aggagcctct acaatctgtt cttggcacca acagacactt
       61 gaccaaccca gctaagactg ctcgtccatc tgttgctctc ctccctttga accctaatcc
      121 tttcatttcc atatatccat gcacagagcc tgctgccttt catctggaat ggactagaac
      181 tgctcagtcc cagccgtagt acagtgagag cagcccttga ccctgctgca cctgaggaag
      241 ccacttctgg gatgttcccc tggagcagct cagcacctcc agcccaccag gcatgggctc
      301 cccttctgct gtccagtccc ggagctacat atttagttaa tgttaatgcc tcgttgtctt
      361 gacattcata atgtgctaag ctgggaaagt aattaaagtt aatttctact tgggggagga
      421 tgaggaaagg tgggggggag caccagcgct ataaattctt attcatattt ctttcctgtt
      481 ttgtgattct caatcggagt tttctaataa cagatcattt ctttttgtct aactttaatc
      541 tggccctgct tgacaagcac catccttttc attgaagggt aagaccactt aaagaaaggc
      601 caataagccc ttgcactgct cagctgactt gggtgatttg tcaccctgtg cagtggtggt
      661 cacaccaatg gatttatctc aaggtaaatg gagatgctga gacctgggac ccggagcttt
      721 gattaaggcc ccctttttgt agtgttgata gatgttgctt gtgtttatct atttgaaatg
      781 ccactaaatc tgtgaataca atggaaaaag agagtagttt gcagctgaaa acatattagt
      841 gatttatgtt tcactaagaa gcacaataaa gagacagagg ctattaagag gagctatttt
      901 catgagaaat agttctgctt taaaacatta tcaaccacac cttgataaag acctacatgc
      961 atgcataatc gtgtttactt atctctttag ttgagtgcaa tatacattag gaatgcacag
     1021 ccccaaatta ttaataagcc ggtagaggct ttgccatgca aatgcatgag aatgggatac
     1081 tttgcatgtt aattgtcttg cagagcaaaa accagcggaa agcactgccc cgggacttca
     1141 gatggactcc acat
//
LOCUS       KCLA01000126             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2017upu ultra-conserved element locus uce-5788,
            sequence.
ACCESSION   KCLA01000126
VERSION     KCLA01000126.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2017upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5788"
BASE COUNT          202 a           80 c          100 g          197 t
ORIGIN      
        1 atattttgta gcttgtcttc agctcaatac ataaacatgg ttgattaact tatcttgaca
       61 gaaatatttt gatgatagca aacaaactta gtagtaaaca tttgacagca ttatttatta
      121 atatgataaa tgaattgtga gatgtgtgat tgtgtgatga tgcattcatt tagttgttcc
      181 tttttttctt ttactaatct ctgtcatgtt ggatttataa atggaatgga gtgacctttg
      241 aaactgtgat ggaaatgaag agataaacac aacttgaaag gacaaaccaa ttaatataaa
      301 tgtgttacac ataaagaact gatttcaatc aattgctatc tatgtaaacc tttgggcact
      361 tagctgaatg aaaaatagca aacagattat gtgacatagg gataaaatat acatgaagct
      421 cttttgttat gtggtaggga tataatccaa aatacacata acacagcagg aggaccaagg
      481 tgctgcttct ttgttctaca aagtccactg aaaagttaca gtctttaaag attatcattt
      541 tctgataaac acaaccctac agacggtgtt tttaatttt
//
LOCUS       KCLA01000127             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2033upu ultra-conserved element locus uce-5008,
            sequence.
ACCESSION   KCLA01000127
VERSION     KCLA01000127.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-5008"
BASE COUNT          190 a          185 c          140 g          147 t
ORIGIN      
        1 aaaccattta atcagtacag caaggcctct gtggacacat ggactacctc tgagatgatg
       61 cttctctccc agacagcaac tggaggaaca tttgtgtgga cccacagtcc ttatccccca
      121 tttgaagggg atagacctgc agggatggaa aaggggccca gcagggataa gagtacagag
      181 tgagggaaac ctctgtgctt gcacctggag tgcatgcctg gcagaggaaa gttcactgcc
      241 atccctctca ttaccctccc tttccccacc agcagccccc agcccaacgg agagaccagg
      301 ctggatggag agcctttctc tccagtgtgc cgcactatga cagatgattg actcgaaaca
      361 atatctaagg cgatcaggat aaagtaccga ccatttcaag gctcagcaga attcaaattc
      421 taattagact tctcaccaca ttccaaataa aaattgttcc cctgatatcc tttttgccta
      481 tcaggtgtct ctccctgatc gctggaacaa aacgcataaa gaaagtgatt aaagccataa
      541 caaaggcata aaattgaaat tatcgctggt atcacatctg ggagcagagt gtgtcactac
      601 actgcccccc tcccctcaag cggtccctcc ccaaatagac acacaggcac ttcccccttg
      661 aa
//
LOCUS       KCLA01000128             964 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2049upu ultra-conserved element locus uce-3130,
            sequence.
ACCESSION   KCLA01000128
VERSION     KCLA01000128.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>964
                     /note="ultra-conserved element locus uce-3130"
BASE COUNT          244 a          250 c          221 g          249 t
ORIGIN      
        1 gccctgtcgg gcaaactcag ctctaatttt cctccagcta aacctgcctc tacataagtg
       61 aaattatgct ggaccagaag agaagccagc gtggggtttg gtcaagcatc acttttcttt
      121 gtaggactgg catggccgga cagcaagtct tgtcctgggg tgcccctagc tttcatactg
      181 agctgacact gcccagctgc cctgtgcaga ggcaggggct ctgctggttt cctacaggct
      241 cacaagtttc ccctgttccc atctatggag caccctcagc tgccccagag actcgtgatt
      301 agcagcacag accgtcgcca agtaacagaa ctaaactggg aggggggaaa agaggaggga
      361 taggaataac aagacatacc tgcagcagtc cttgccacct atccccccgc gtcctcctga
      421 tggcgtcagg cgcaagggaa attgttctat cagtgactgc gttagattca tgaccccacc
      481 acaaccttga attggccttt agttgtcgct gatgggaact gaagaacagc tcctgtcgac
      541 atgattgctg ctctccaatg aatcagaaca cgcagggcac agagcagcac attaaaccag
      601 caacagaaat acatcactgc acttttatat agatgtattg ctggtgccca ggcacataaa
      661 tgattgggct atccacttat tttttttcca aggactataa attaaaaata agctaagggt
      721 ttggaaatta tgttcttttt ctccttcccc cctccctcta tattttttaa ggtggggaag
      781 aattttagct ctacagtaaa acatacgaaa gggatctcgc tgcctctgtc tacctggccg
      841 tcctttcttc caggagaaat tcagtgctgc agttctggct cacgtgagct catgcgcgct
      901 cccttggctg ctaattaaca ctaaacagtc tgttttaact ccgtacgatc aagtggtgaa
      961 acgg
//
LOCUS       KCLA01000129             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2063upu ultra-conserved element locus uce-4694,
            sequence.
ACCESSION   KCLA01000129
VERSION     KCLA01000129.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-4694"
BASE COUNT          185 a          114 c          129 g          211 t
ORIGIN      
        1 ttgtttgttt tggtagaagt cttgaactta cccaaacatt ccccttatta ttatttccta
       61 aacatcagta ctttcagcct ccaactttgc aataaacttc ttttcaatgt tggtggaaaa
      121 atgggagatg ttgaaaggat gagctaattg atgtttcctc agcctatcta aaggacgcta
      181 ttgtgttaga gtcatgccgc atttgtaatt tatgcctgtt aaacccttgt tttatcatct
      241 attacgggct tctaggcttc tgtttgcatt cactgtctgt tacaagcatt tcattttaca
      301 aggagtaaaa attatttcag ttacttttac tgtacctgaa aaggagaatg ggatttgcaa
      361 atgataaatg gggaagttga ctagctaact aataaagatt tgtcttaatc aagtatgatt
      421 tgtcagaaca ggagcgcact ggggtcaggg cacacgcaat gaataataca gcattcactg
      481 gagaaaagga ccaggcaaaa ggcctcataa atatgctgcg attacccact gctaattcat
      541 attcaaagaa tgagttccgc tgaagccagc ttcagggttg ctgagctgtt cacctgcttt
      601 gtgggcttta tgatgttgaa gaaagtttct atctatata
//
LOCUS       KCLA01000130             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2079upu ultra-conserved element locus uce-1339,
            sequence.
ACCESSION   KCLA01000130
VERSION     KCLA01000130.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2079upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-1339"
BASE COUNT          271 a          179 c          189 g          330 t
ORIGIN      
        1 tttttattgt aggagttcca tctggaatat gacaaattag aagaacggcc tcatctgcca
       61 tcaaccttca actacaaccc tgctcagcaa gccttctaaa gacttccctt ttcttggggt
      121 atggctgtct cagcacaata ctcaacataa ctgcagaact gatgtggctc aggcatcctg
      181 gttttaattc cttgaggatc tggcaattgg ctcatgcgaa aggtcaccat ttgaggtcct
      241 gccttactaa ttatgtgctg cccaacaact aaatttgtaa ttgtttttct ttagtttgag
      301 cagggtctga atttttgttt tcgttttatt ttttgccagc agacacgctt gggtctgtaa
      361 agacaagcga gtacactgac aaaagtttac cacctagttt tccaaaatgt aaaaacgaaa
      421 aaaaggacaa aaaattagac aacaaaattt gcattgttca ttgtagcact attggtaata
      481 aaaaatgttt gtgcattttt atgtgaagat ccttctcgta tttcatttgg aaagatgagc
      541 aaggtttgct tccttcattt tacttcccct tctgtttttg aaaggcagtt ttcgccaagc
      601 ttaatgcaag aatatctgac tgtttagaag aaagatattg ccacagtctc tggttggttt
      661 ccagagttgt gtattactga gcttcatctt tccagaatga gcaaaacact gtccagtctt
      721 tgttacgatt ttgtaataaa tgtgtacatt ttttttaaat ttttggacat cacatgaata
      781 aaggtatgta tgtacgaatg tgtatatatt atatatatga catctatttt ggaaaatgtt
      841 tgccctgctg tacctcattt ttaggaggtg tgcatggatg caatatatga aaacgggaca
      901 ttctggaact gctggtcagg ggacttcttt gtcgccctgt gcactaaagg gccagatttt
      961 cagcagcca
//
LOCUS       KCLA01000131             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2093upu ultra-conserved element locus uce-6870,
            sequence.
ACCESSION   KCLA01000131
VERSION     KCLA01000131.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2093upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-6870"
BASE COUNT          165 a           89 c          109 g          192 t
ORIGIN      
        1 agtaaagaat tggaacttta atgtttatta ttgtcttctg ctcgtattaa tctgttttat
       61 gcatagtatc caacgaagtt taataagcca gtaaagaaga aggatggata attagtttaa
      121 gcaggtaaat gctaattagg aaactcctga aaggcatcca ttatacacta gcttaaaaca
      181 aattttacag ccctggttag tggtgtaatc caaattctgt caaggcaact gcattttctg
      241 taattgagat gtgtatgttt gctttgcata acagatggct ctgtatgctt agactgatag
      301 ctaggaaaat aataattgca ttattctggc caaaagaata ttagctcttg ggttttggcc
      361 atttcagtca gtcctcctgc cagcacagca tatgcacata tatggattgg attttcaagg
      421 aaattgatgc atctggaata gtgtggccat ctgaaatatc atctgttcaa gaaaaatttg
      481 gctttaaccc tatgctagtc tcttgttaaa gcattttctg ccactgtctt tttatctatg
      541 gggattggta tgtct
//
LOCUS       KCLA01000132             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2108upu ultra-conserved element locus uce-4512,
            sequence.
ACCESSION   KCLA01000132
VERSION     KCLA01000132.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-4512"
BASE COUNT          156 a          112 c           94 g          189 t
ORIGIN      
        1 tactctacga ctctacgtat cccaggaaaa gggtatcaag agattccagc attcattgaa
       61 gtgcttatta caagtagtag ttgcaatatg ttgcattatt tggcacgttt tcaggaaaat
      121 ggaatgtccc cccctttcta acctgaacta gcactaattc tattgattat cctataccaa
      181 tacttacttg ctttacttag tagttctggg aaagataatg atatttgctg taaacctgat
      241 atgaaaactg catttcattt ttctgctttc aagctgcgag ctatctgtaa gaaggtatta
      301 cttaatgctt tttaccttag cgtatagctt acagtgctgt aagcatacat agcataagct
      361 ctcattttgc agcttcatag catagtcata tttgcttata acaggagctc tacaaaccca
      421 ctgaaaatgc attattccta gttttaaaaa gctgcccatt tctgggttgg cttatttgtt
      481 cacataaaca caaatctgac tcaatctgat tggtgttggc cgcctttcct ttctgtagca
      541 aaaggtctag c
//
LOCUS       KCLA01000133             917 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2124upu ultra-conserved element locus uce-1157,
            sequence.
ACCESSION   KCLA01000133
VERSION     KCLA01000133.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>917
                     /note="ultra-conserved element locus uce-1157"
BASE COUNT          274 a          164 c          175 g          304 t
ORIGIN      
        1 caactgatta ttagaaagat tagattgatc tctctggatc tgaggtaatg ataacaaatt
       61 gaaggcttta cttttgttgc ctttattgaa tagtaccctt ccaaattgaa aatacagaaa
      121 tagagttcac tgccttgtat tctccacatg ggatgtggat tccaaatcta aatctattgt
      181 tttcaaacaa ttcctgataa aaaaaaggaa tgtctgaata taccatatat attttattat
      241 tgaatttgtt acactgatta taaataatac ttgagtagac tgactacaga aatgccccta
      301 gtaaaatctg ggagcactgg tacagcagaa tttctcagtt tgatgtgact ctgtctttga
      361 cagttctcct aaggtaggtt attttggaga aaacatatgt ttccattttc tctccctcgg
      421 cttccctttt agtccccagg ctccactagg gtcacagcaa cattaaggct tttgtcactg
      481 tgattaatag ctctttagat catctttaat tcactcacta atgactgagg gtctttctgc
      541 tctccaagta atcgcgtgat gtatgagcca atagtacacc ttgtggcaga ggtgaaaatc
      601 attcaggcaa tgcaaatatt gtcacaggga caaatgtttt tcctgttaat aaaaattaat
      661 gaattctacc caggagctag ttaaagaagc tctggtgaga gaggtccaaa cacaaacaag
      721 ttcttgctgc ttggaaccat taattgagtc attctagaca tgtgaggata attattgtta
      781 gtatttctgc ataatagatg aaagagtggc agattgattt aattatacaa atgcattgca
      841 ctgcaggtag atctgtcttt cagttatgcc caggtgctgg tcttcacctg ggagacatta
      901 ttttgccttg ccatggg
//
LOCUS       KCLA01000134             959 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2139upu ultra-conserved element locus uce-2367,
            sequence.
ACCESSION   KCLA01000134
VERSION     KCLA01000134.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2139upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>959
                     /note="ultra-conserved element locus uce-2367"
BASE COUNT          302 a          182 c          184 g          291 t
ORIGIN      
        1 tgaattgtgc ttgaacttat tatctttgtc tgaaggtgtt agaaaaagga aagcccttgc
       61 acatctttgc catctttaaa aattgtttgg ttttccaact aatgtccatt tctcctgaca
      121 ataaatatga ctttacatgc caagctttta tgggctctgt ggaagcatat tttaaaaagc
      181 agggggaaat tagtttttta tttatcattg actaaaaata gtcaatgata aataaaaaac
      241 tttaacggca gcctgaatcc aggaaagaca ggacttagaa gcgtcgcggt aatgaataac
      301 cacgcagcga acggcatgca cgcagccatc ttaacgtttg taacggtgct aatttccccc
      361 tgctttttaa aatatgcttc cacatgagct ctcagagccc ataaaagctt ggcatgtaaa
      421 gtaaattgtt tgtcacttgc tgacgacctg ccatatttat tgtcaggaga aatggacatt
      481 agttggaaaa gcagttgtta aaggccaaac aattttaaag atggcaaaga tgtgcaaggg
      541 ctttcctttt tctaacaatg cgccacccct tcagacatca aaagacaaga taataagaca
      601 cttcaagcac aattcaagat tatattcaac atctaaaggc tcatctcttg tcagtttgca
      661 tttactctcc cagggatgtg atgcttctat catcactctg tcaagaggag tctggcagaa
      721 gcgatgaggg cccctcattt cacacactta gtgtttttta tcaaatagcc ctcgctcatt
      781 cccattcaga caaaatggag gaataatttg aggaaggtca tgcacaagta caaaacctcg
      841 tgccgattcg tgtgattaga aggcattaaa attgcacgtt tatgttagtt ctgagatgtt
      901 ttgtcagttt atttagtaat aaactgtagg agcattaaaa atctttaaca aggaagttt
//
LOCUS       KCLA01000135             494 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2154upu ultra-conserved element locus uce-3246,
            sequence.
ACCESSION   KCLA01000135
VERSION     KCLA01000135.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 494)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..494
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2154upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>494
                     /note="ultra-conserved element locus uce-3246"
BASE COUNT          163 a           86 c           72 g          173 t
ORIGIN      
        1 atagataggt ttaattcctc aagccaaaga aaaattatat catcttaagt gttttccata
       61 tttattatat tgatgagact tggctgcaga gaaaaaagag gaagcaaaat ctcttgtatt
      121 gcaagtttta aatgtacgag gctaaggttt acttaattag aacctccagg caataaagga
      181 gccctttttt aaattctgtg aatcttaata tgctaaataa tgcaaagctt caactcttca
      241 agcatgagac acacatctgg cagcttaaca tttaaattac agggaaaaaa ccacttcagt
      301 agtaattttc atgaagaaaa gaatgggaaa tgtattacaa ctaaatttaa tttcttttta
      361 gatttttcat cctgtctaat tgcaggcatt tcccatcttc ccctttattt atttatttac
      421 ccccccccat actttttatt gatctttaat ttgagcagct tcttactgtt acggccattg
      481 aagaattaca ttgt
//
LOCUS       KCLA01000136            1064 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2170upu ultra-conserved element locus uce-865,
            sequence.
ACCESSION   KCLA01000136
VERSION     KCLA01000136.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1064
                     /note="ultra-conserved element locus uce-865"
BASE COUNT          316 a          207 c          209 g          332 t
ORIGIN      
        1 caggaagagc aatgcagagt tacttcctaa aggaactctt cttacccacc ctttccttga
       61 caaccctgaa agaattatgt ttattatgta cagtgaggaa gggagaacca gattgcatgt
      121 cactgtaggt cagttgcaat gcagcagatc tcaaaaaggt gtaaggtctg ataagaagtg
      181 agtcttctct gcttgccttg tcaagtcacc aatagtttat ctaaaggtct gtgcccttga
      241 agtacatatg tatcttattt ttaagcataa ctggaaatgt cttcctgtcg agaaaagtct
      301 ctaaccatgt gactttacat ggtgtttgca gttatttttc tagccccaga gataattagc
      361 acaaaggcag tttgccaaac taaagccaag agaatatcct tcacagcctt tctgggcatt
      421 tgtgtccttt tccaattttt atgctgctgt cactggactc tggcatttct tagccaattc
      481 atttgctttc tgtggtaatc atatgcaatg aagatatgca tggccaacat ttaaacaggc
      541 tgcagatcaa ttagtggtct taagtttatc tgatttttat caaagaagac agagctttgg
      601 gtcgattgtc agagcctgtg tcaagttgac cttttcagag acgtctacat tgccagtccc
      661 ttgggcaact tgttgtcccc tgttagtctc tgaatggcag aagtctgttc tgctcaagca
      721 caaagtatac acagatgtct atattacatt cttataggtt tgacagcaac tgcatgttgt
      781 atctataaac tgtcctttag cagtgacact tcctcaatga tgataagcta atttatgcaa
      841 ctaaatctcc tttgtgcaga aatgaaagct aattgagtca ttacaaagta attcaggaag
      901 gaataccttg tataaattgg cttactttat aaatccttct caagtggttt tcatgcatcc
      961 taagtggtgc taagcagttt tgctgccatc aaacaccaga gtaaaaaaga cacctttgaa
     1021 agcattatgt tagaacagca aagggaagag acaagaagac aaaa
//
LOCUS       KCLA01000137             216 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2186upu ultra-conserved element locus uce-280,
            sequence.
ACCESSION   KCLA01000137
VERSION     KCLA01000137.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 216)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 216)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..216
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2186upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>216
                     /note="ultra-conserved element locus uce-280"
BASE COUNT           74 a           43 c           32 g           67 t
ORIGIN      
        1 cccgctttgt acttgcatta tatcatgtaa aactattctg agcaactacc ttatagagat
       61 gtttccttac aatctctggt ctcttgcaga aattgtgaag ccttttaaaa agctgttcag
      121 gtgtagaata cagatattca gctgcaggaa aaacagatac atttttaatg aaacaaaaac
      181 ctcaaagcac acactcgata ttagtcactt tactaa
//
LOCUS       KCLA01000138             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2202upu ultra-conserved element locus uce-7482,
            sequence.
ACCESSION   KCLA01000138
VERSION     KCLA01000138.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-7482"
BASE COUNT          173 a          199 c          231 g          145 t
ORIGIN      
        1 gatgtcctgg ggagcctttt tgggatggtg agggatgcca agatgcaggc aggactcaga
       61 gagctcagca cctcaggagg aggtgatggg gaggactgcc gaatcctgcc ctgcccaggg
      121 gacacgctgg catcaggaat gtcccagtgg ggaaggcaga aggcatcagg atccatcgtt
      181 tcccctggca gggagaccaa aggtttcaga gcagcccagg gggccggggt ccccagcgct
      241 cccctccccg ccccttgttc ccagctcatt aaggctctcc cattattctg acatttgtgc
      301 gcgtcacgta ccgggaagaa gtaatttact tagaagaaat taaaagttca ttttaattga
      361 gcgcacactg cagtatgcaa atgcggggcg cattatgtac actgatgcag agacaaaggc
      421 tgtaatcaac tgttaaccct ctgcgagcca gccccaggct tctaggcagc gctggcaccg
      481 cactggccgt gctggagacc ccataaccac atgccgggtg tccctcagcc atgcagctcc
      541 acgacgtggc agcatgcaca aggacaaacc cctccacacc agctcgaatg caggagccag
      601 agcagggtgc cagtagtgga ttgtgtcccc caaaccacta tgatgtgcta gggtggctcc
      661 aagccagtga ggtggggtgg gtggtcaggg cagaggacta agcctgtttg aggagcctgg
      721 atgagatggg gatgccagat gtggtttg
//
LOCUS       KCLA01000139             418 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2232upu ultra-conserved element locus uce-2255,
            sequence.
ACCESSION   KCLA01000139
VERSION     KCLA01000139.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 418)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..418
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2232upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>418
                     /note="ultra-conserved element locus uce-2255"
BASE COUNT          137 a           89 c           87 g          105 t
ORIGIN      
        1 aacataaaat ctggcctcct gccagatttc tacagggcac tagtaaaaaa ctggtgaagc
       61 tcattggaaa aaaagagaga gaaacctata accattaaaa gtccattaag cagcatgtca
      121 ttttgtaaag ctaaatagcc cacagtaatc aaaagcatat gaaccccagc tgggttaccc
      181 agcaaattgt ttcgatttag gggggtgaat tcatcaagaa agattgttcc taggattggg
      241 ccgatttttc tccttcagtt gctggctcca tgtcccatta taattacagt gattgatgca
      301 ccttgcagac aaaggtgaag agtgaccaga atagcccaaa catctgctca gagcaagcca
      361 ctgctaatgt ggaactctgc agaaaggcat gttaggtcag ttatcccact atcactga
//
LOCUS       KCLA01000140             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2260upu ultra-conserved element locus uce-8011,
            sequence.
ACCESSION   KCLA01000140
VERSION     KCLA01000140.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2260upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-8011"
BASE COUNT          262 a          161 c          142 g          226 t
ORIGIN      
        1 ccgatgccag ttttctaatc atctagtaca taatctcaca actacaaata tgaagacaaa
       61 aataacatgc aaattattta aaggtttatg aaaataaata cgaaaacaag caaaagtaag
      121 aaatagtact tttcaagtat tccatacaca cctaatgttc tgtgttgtga acaaggtgga
      181 aagaagacac ttgcacttaa atcttgaagc atcccgtccc gatgaaccca gagaaactaa
      241 tttctgccat cagaaaagta ctccaccaga acaccaaata attgtacgtg ctgctctaaa
      301 ggaaacagca agcccagttc tggctgtatg tagtctcttg aggtacaata atataaacct
      361 gatcaattgc aattaaaatc ttaacagagg cttagaactt gaagtcttgg tgcattagtt
      421 cttgccaaaa gcagatgtga ttgtgagctg gaagcaattt ctcctggtaa tttgtgatga
      481 cactgggtag agcagcccca gagtccccaa agacaaactc atcagaggct ctaatgtatg
      541 catgacacat gaggtggctc ttttagagct caattaattg ggctgaacgt taagacagca
      601 agttcaggac tttttttttc cctcctccag agttgttttt cctcttttta caagcagttt
      661 tttcccttac cttctgcaag ccatgtctcc tgtaattggc tcagatcttg aaagagttct
      721 gcaaaagaca aagatgtgga tagaagactc acgcctttaa tctcttccta acattaaaat
      781 atgcttgaaa a
//
LOCUS       KCLA01000141             368 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2276upu ultra-conserved element locus uce-3887,
            sequence.
ACCESSION   KCLA01000141
VERSION     KCLA01000141.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 368)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>368
                     /note="ultra-conserved element locus uce-3887"
BASE COUNT          130 a           58 c           77 g          103 t
ORIGIN      
        1 tggcagtata gagggttcag caatggcatt tatagggaaa gcgggaagac aggtgtcaga
       61 acggtccagc aggcaaaccg aacgaacact aatcagctct ggtgttcttt tacaatccat
      121 atctaattca cgagtttcat tctttctgaa aaacaattac taggttttga agttcattgt
      181 gcatttactc aactgtctct tcacattaat gtaagtggga acaagaaaaa aagagtcagc
      241 agggaaggga catcaaaaga tcttagagca gatgaaggct ttattttaaa gtaatataat
      301 tacagatgag cctaacgttt tacaataaat ttaaatgtag acttatatcc tgatgcaata
      361 ggaaagta
//
LOCUS       KCLA01000142             423 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2290upu ultra-conserved element locus uce-4538,
            sequence.
ACCESSION   KCLA01000142
VERSION     KCLA01000142.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 423)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..423
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2290upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>423
                     /note="ultra-conserved element locus uce-4538"
BASE COUNT          139 a           81 c           83 g          120 t
ORIGIN      
        1 aataaaccag aaagtattgc tgataaagca tgcacaattt agaagctcta tgacaattac
       61 agtggaaact ctgaagacag tcaatttaaa ggacaaaaag gttgttgggc acagtttttt
      121 tcttttactg catacagttc cctgctatct aaaattgtga tttatgcagt attttaatat
      181 tttgcttatt ctttcccctt gggtgctctc tgggcagcga taaaaaggcg acgctgaaag
      241 agcaccatta atttgctctg atgactggcc agataagggg agataatggg aaagataagc
      301 ggagaagata taccatcaga aacccgatta ttaccattaa aattccagcc cagcaatctg
      361 cagaagcctg ataattcctt ctccgtttcc accactttgg atgataaggc aaaaaatagt
      421 cac
//
LOCUS       KCLA01000143             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2306upu ultra-conserved element locus uce-1915,
            sequence.
ACCESSION   KCLA01000143
VERSION     KCLA01000143.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2306upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-1915"
BASE COUNT          235 a          181 c          219 g          274 t
ORIGIN      
        1 gtaacctctc tccctgctgc tgcgcttgca tgccattggt aattccctct aggaaagttt
       61 ccaagaagtc gctacaagca gtgggtgaag gagctagggt ttggttgagt gtcgtgtgta
      121 actgcacaac atccaggaga agagtcatgt atgagcagac atcccatcac tctgcccatt
      181 ttatagatac acatatttat attgcgtgtg taaataatac cagggtatgt tttctgcacg
      241 tgttgtatgt catgctgcgg ggcagggcag ggggcagata gcaaggctac ttaatgggct
      301 ttcttaattt accaactgtt agcatgcctg cccatcaaac atttttaatt ccgtgcttca
      361 gtgtaaccag caagtttgtt tccagtgctc ctcacaggca cagcttaggc caagcacaag
      421 ttgaataacc ttcaggaaag ctgtgctgtc cttctgttgg ccgctgtctt tgaaaattgc
      481 ctgcagagtt agtgagcagg aacagttaag atttacaaac aatgatgaag cttgtcatgc
      541 atctttcacc attcatcatc tgggtgccgt ggctgggcgg tgaagtgttc ttcataaaaa
      601 ccagctcagt gtgaaataca cctcgcagca atgtttactg ctctgaaact cgtcagcagc
      661 cctttatagt aaatccagat tgcgatgtga cattacagta tatcattgca gagcgcgctg
      721 gggtttacac taggaatgag tgcagttcac accagatgag atgtcgaaat tgagttatgt
      781 aggaatttgg ctgttatatg gggatagctt ttgttttctg aggactgaaa tttagcttta
      841 tatatataat atacacatat ctgtgcttgt gtgtgggtgc ctgtatcgat atagagatag
      901 gtatacatg
//
LOCUS       KCLA01000144             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2336upu ultra-conserved element locus uce-1544,
            sequence.
ACCESSION   KCLA01000144
VERSION     KCLA01000144.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-1544"
BASE COUNT          237 a          157 c          155 g          185 t
ORIGIN      
        1 cgagacacgc cataaacaat gtcaaactgg agagagacgt gtgaggtcag ggtgcttggt
       61 ttgggtttct tttccttttt atgcattttt cccgtggctg tacacaaagg gggaaaaaaa
      121 aatctaatta gggttttaaa tgcccaaaat gccatgtcca ccaaaagccc gatgctcatt
      181 agtactagta attaacttta caactgtcaa cacaaacacc acacaggctg acagatagat
      241 agtagctctg agggtgctaa taaatccgga aataacaact tgacacgcag atgcacaaaa
      301 ggatgcaggt gataaagaaa tgttgacatc aaatctaatt atcttcgaaa tggccaactc
      361 ctgcacactg ctcagtaatg cactgttatt gctggtgatg agccccactg gaacggctcg
      421 taaccaccgc acgcagcccg gcttttacag ccccttgtca tatctagtga ggacaatatc
      481 aaaaaggaaa ttatgagtgt cacgacccct ccaagtcaaa aatctagtga tgaatatagg
      541 ctcagcaagg catagcagat taccccttac gagttttaaa gccgggatga tatatgacat
      601 ttttatcagg cactttctca ggaatgtcac caagagggaa aatcaaggcc ctgaaaagag
      661 acgactaggt gaattatgca actgtaattg ccgatcataa cctgatatga gctgaaattg
      721 ctctgttttc atat
//
LOCUS       KCLA01000145             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2367upu ultra-conserved element locus uce-4690,
            sequence.
ACCESSION   KCLA01000145
VERSION     KCLA01000145.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2367upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-4690"
BASE COUNT          108 a          148 c          177 g          131 t
ORIGIN      
        1 ctttgccttg ttatgccagt tgacttcctg gcacacgaac agggccgagt ctcgaccggt
       61 gacgtgtgga agggagcact tggtctgggt ggtgtgcggg gtggcaggag atgggccctt
      121 gtgctcccgc tgtctttctc tgtgctctag tgatgtctcc ttatcctctg cccttgtcca
      181 accaggcagg ttttaatgcc ggtgatggaa agcgctactt caacatccct ggatcccgca
      241 ctgatgacat cgctgacgtg gagatgacga caaatgtggg tatccccggg cgctgggtgt
      301 tcagaatcga tgatgcccag gtgcaagtgg ggggctgcag caatacaagt aagaggacag
      361 cagttaggtt tatttaactc ccaacccaat cccacaatgt tctccagccc tgtctttctc
      421 tgcctcaact gccacctccc tggtgtggag gagatggctc tgagggcttg gggagggagg
      481 ggaggcagtc atggggggcc catcctcagc gcctgccata gctgggaaca gcacccacag
      541 gtgtctcggg gctgggagag caaa
//
LOCUS       KCLA01000146             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2383upu ultra-conserved element locus uce-6729,
            sequence.
ACCESSION   KCLA01000146
VERSION     KCLA01000146.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2383upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-6729"
BASE COUNT          188 a          139 c          154 g          303 t
ORIGIN      
        1 ttttgtttca gaataggacc tgcagataca agcttctttc tgaatcacaa atttaactat
       61 atcaatgtga ctgaactact gggttagtta tatacacttg ttttatgttc agctgtctgc
      121 taggtttata ctaatgtggt atgttttcct ttctctcttc agcttaataa cgagtttgta
      181 ttttgttttg atttttcagt cccgtctttt accttcacac caacaggtat atatttgcac
      241 ttttcccccc ttctttattg ctttagcatg tggttgtggt actgtttctc tttttctgac
      301 ataaccagcc cagctgttct gaaggacttt taaaacgatt tcattaatga cacctagcgt
      361 tattttgttc tccaagtagt gtatctgttt tgtttctgtg tcccattagg tagtgtacta
      421 gttgatacaa gcatgtcatt ttattagtct gtacaacctg ggctctcttt ctgcgtgtgg
      481 ccttctatat ctagcaacac caaaggtgct tctgatggag gaggaatgat ttagcagagc
      541 ccagaggctg acttgaaagg gattgagtgg gattagagtt ggtgaaacat ttgctgcttt
      601 tctgttctct gatttggcat taatcctgtg acctaggagt tgtcagcttt ggaagataca
      661 gaaaatctaa tagcagttag atttcttcac ttgctgtctt aaactgtatt tgttctttga
      721 agttttaaaa taatcctgtt ctacataaac agaggtacat ttctaaaatg tggtggggtt
      781 aaga
//
LOCUS       KCLA01000147             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2399upu ultra-conserved element locus uce-2676,
            sequence.
ACCESSION   KCLA01000147
VERSION     KCLA01000147.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2399upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-2676"
BASE COUNT          279 a          133 c          128 g          257 t
ORIGIN      
        1 ctaagactga aaaaaaccat aacttgaaag tgattaaaag aaagatttct gtaatgtgtt
       61 caggggaatg taacaaacta atttaagcta atgtaatgtt tataaagtta cttagataat
      121 gacaccatgt atgccattat aatcattaaa acccaatcta ttttttttta aacctagatg
      181 attaacacaa aatcaagttg atgcgaagga acaattactt ttagaaaaaa aatcaggagg
      241 tcctaatatt ctgtagaatg agggaggatg cagctgtatg tcgacagctt tcatatcctc
      301 atttgaataa tgtggcctga atctgtcact ttattcatcc tccttatgct cagtgtactc
      361 tgcatcaaca acaaattaag ttgtaaataa gagacaatca tcacttttgt ttttaagcag
      421 cttctgcatg gagaatttca atgtactgtt tctttttgac agaaagaaag ggattctaca
      481 ctctgcttat gtaagcacaa atatgaggaa accaactgaa ctgaaacaat aaggagcact
      541 tgagaactgc tccaaaatgt tcttggaagt acatttctac taccagagaa agttcctttt
      601 tttgtaggat acatataatg aaaattgtct aatgtacttt aataattatt gttactttgc
      661 tttaaaattt caatgatgtc ttttttttaa actgaaatcc ctttccttgc ccaggcacaa
      721 gcaggacaca cctcagcaag aagaacaagt gaatagtcag ctgttacctt tgtgtaccca
      781 gaaatattat taatctc
//
LOCUS       KCLA01000148             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2415upu ultra-conserved element locus uce-4858,
            sequence.
ACCESSION   KCLA01000148
VERSION     KCLA01000148.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2415upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-4858"
BASE COUNT          211 a          122 c          101 g          136 t
ORIGIN      
        1 tcagtttgcc aaaagcaaac attcacagta caaaaatact taagacttgt ttggagtttt
       61 tagagtttga aaggctgaac cgatggctaa tttggaaaaa ggaaagcaat gtagatttaa
      121 aaaacaaagc ctgttaactt gcttacattg caagcacaca aaaataaaaa gtccccatta
      181 acaagcatcc aggacaaaag gagttaatat ttaattaaaa ccagctctat ccactgtaac
      241 aatgacctgg agccaaacaa ggcagaagac gtatgagtca ttctttctgc cagtgaatga
      301 gacagctgat ctcctaagca attcctcaag acaagcagtc agaactggag ttctgcctcc
      361 attcacaaaa acacagtcca gcatgaacca tgtggcccca accacaagct tttcatgtca
      421 cacccttcca gaaagctaca gcgaaataaa cttgaacttt aggcataaac acactgattt
      481 cactgctttg tctccagatg cagtgcagac ctgcggagga acatcattta ataaatgaaa
      541 gttaagcgaa ctagaagagc ttaaaattta
//
LOCUS       KCLA01000149             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2430upu ultra-conserved element locus uce-6654,
            sequence.
ACCESSION   KCLA01000149
VERSION     KCLA01000149.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2430upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-6654"
BASE COUNT          234 a          204 c          293 g          255 t
ORIGIN      
        1 acagtcaaaa taataacagg gtgtggggtc tgctggaggg gctgggtgca gctgggggag
       61 cagtgtgatg agtgcctgtt gtgtaccagt gtctgcccag tgacaccgtg atgtgcctgt
      121 tctccctagg ctgttgctgg tctttgatgt gtgcatccca acacacagcc cccttttaaa
      181 ccccagcaga gatttcagtt gtgtgggtgg aaatggctgg aacaagtctc aggaagacac
      241 agaagaggaa atactttctt cctttccaat gttattttca ttccctctct tttccattct
      301 gcccttcctt tgccatctca catctttcta aattcagggg agctcttcct caaggtgaaa
      361 tgaaggctcc aggctgtgtt tggtggtgct ggagggggtg gatgagggtc agggagggtt
      421 aagcagggag ggggcagtgc aacaaggtgg cctgatctag tgattaaaca aagggattca
      481 gccaacatgt gtaaaattaa gtgatcaaga gttgattaca gagtgcattg attgtgtact
      541 gatggattaa acagagtcgt gcttgggatg cgattttccg agccgggcat ggagagtgca
      601 ggcaatcgac gtgttggcca gaaggacccg cttctcccaa tccctggctt ttatacattc
      661 tctggataaa tctgcagaga ggcccatgga attataatcg attatccatt tctcaaagtc
      721 acttaagggc cctgagctac aagctaaagt gccggtgctg cgaagaggca ttgggtatgc
      781 gccggcatgt gcaggtgctg gcgcgagggg aaaatgtggc aatgaccctg cgtgctgcaa
      841 gctgatgaat ctattttctt gtaggaaata gttttgacag ttcaatatct gtgttttcga
      901 tatgtgcccc acacaccccc gaggaggagc agggaagtgg gggggagaga gtgggtggga
      961 gggagagaca gactctaccc catcac
//
LOCUS       KCLA01000150             236 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2446upu ultra-conserved element locus uce-1121,
            sequence.
ACCESSION   KCLA01000150
VERSION     KCLA01000150.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2446upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>236
                     /note="ultra-conserved element locus uce-1121"
BASE COUNT           83 a           41 c           62 g           50 t
ORIGIN      
        1 gtggtggggg aagtggtggg aaggggagag agaaagtaaa agtgaaagct ccataaaaga
       61 aagtggaact attatagagc aaaatgccaa ctcattacaa agcagccaaa taagagagaa
      121 ccacagctct gcccgtaata gcggtttaca agggaacatt gtgctgcgac agaacggggg
      181 cgctataatt tgctctaaca actccaatta tgccttttat tgatttggca acacat
//
LOCUS       KCLA01000151             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2462upu ultra-conserved element locus uce-6195,
            sequence.
ACCESSION   KCLA01000151
VERSION     KCLA01000151.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-6195"
BASE COUNT          281 a          151 c          188 g          296 t
ORIGIN      
        1 acagaaatca ctgttagcag aattgccttt tctaacccat ggattttggt tttgccgtaa
       61 tgcattatgt gcctgtgaag cataaatata taaagcatga cacacacact gtagctgatt
      121 taaaacaaat agtttgcatt ttggtctttt gctgaattca gcaagggttt ataggaattt
      181 ctagatccta aagcaattga acacagtgac ttttagaagg caaatcaatc catcaatatt
      241 acctgctccg attttgtttt tcttggagca tatttagaat tgtacattcg aggtgtcaag
      301 gttcaggagt caagtgttac atgtgataaa ttaagcaaag gtcagaggct atgcaatgcg
      361 gcttcagaag attgtctacc tctgcctttg cagctcattc atgctgaagt gatgcactat
      421 gggaattact accaaactct gctctgcaac atctgctctc cctaagtgag ttagtgcacg
      481 tcagacatct ttatgtcaga atattgcagt gatggatgca gtcttcagaa aatgctgcat
      541 aaaaatctgg tgtgccgttc tggccattaa gtgaaattac tatttaaatt aatggcgctg
      601 tcacagttta tctgtgcaaa gaatgaacgc tgattagggt attaagtaat tagcaattta
      661 tcacactgga acaaggttga taataattaa agaagtaatg gtttaccaaa gaaactagaa
      721 agggagtcac ttcttgttat gtgagtgaaa tcttggctga aaaatttaat tcacggaaac
      781 aaagatgagg tttgctgtga aagaatacag ccttgtttgc ttcagtagaa aaactgttca
      841 ttatcaaaat tttagtttgc ctgtcaaaag tcccttgggg ctgtcggagt tgcttattag
      901 tattgaatta ttttct
//
LOCUS       KCLA01000152             404 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2478upu ultra-conserved element locus uce-5627,
            sequence.
ACCESSION   KCLA01000152
VERSION     KCLA01000152.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 404)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 404)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..404
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>404
                     /note="ultra-conserved element locus uce-5627"
BASE COUNT           71 a          113 c          148 g           72 t
ORIGIN      
        1 ggaggaggag gaggaggagg aggagaggca gcaggagggg agggacagaa cagaccccaa
       61 agcccggcac aagtcctatt ctgatattta aaatagacag gcacctctta cgtttattcg
      121 cgcttggtat tcggcgctgc ccaccgagtt ccgcgcggtg caccggtaca cgccgccgtc
      181 cttgatctgc gggccggtga cgttcatgtg gctgacggtg gtgccgtccg acatggtgta
      241 ctggttggtg cggtgcccgc cgtcccgcgg gatgggctcg tcgtccagcg cccaggtgac
      301 ggtgggaggg ggggccccct tggccgcgca catcagcgag aactgctccc cggggttgac
      361 caccttctcg ctgaaggagg agacgatgcg gggggtccca tctg
//
LOCUS       KCLA01000153             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2493upu ultra-conserved element locus uce-4183,
            sequence.
ACCESSION   KCLA01000153
VERSION     KCLA01000153.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-4183"
BASE COUNT           99 a          129 c          156 g           83 t
ORIGIN      
        1 gggctgaggc agcgtcgccc acccccagag cccccatcac ggtgggatgt ggggagaggc
       61 gatggggaga gaggaacccc gagctgcacg gagcggagaa ttccttcgcc tttaaatcgt
      121 ctgggtaaca gttggctggc aggcaggaat atttggcagc ggcgaaatta aaagtgataa
      181 attttctcgc cgagcgctga tcgataatag aggtctcatc tgttaatcaa tacgacagtc
      241 tgcctgttta ctgtgcatgt gctgttcgcc gccgcccgcg ccgcgacggc aactctgcat
      301 tcaaaacaac ccgggtgcca gggtctgcgg gcagggggac ccacgccaaa gcaagggctg
      361 tggggtggct gcgagccccc aggatgctga acaccgcgtg ctgccaacca tccctccctt
      421 cgcccaggca gagagaggag cgtggccaga gttggcgagg ggctggg
//
LOCUS       KCLA01000154             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2509upu ultra-conserved element locus uce-6765,
            sequence.
ACCESSION   KCLA01000154
VERSION     KCLA01000154.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2509upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-6765"
BASE COUNT          260 a          237 c          223 g          236 t
ORIGIN      
        1 gaattaccct gataatatag cccaaatcat cctgctcctg cccttcctcc ttgccttttg
       61 ccctgtagct agtgaacatc atgagtaaca gggatattca acagggattt ggtttttttt
      121 accttgttcc agaaagtgga taacacacta cactagacag aaaaatccat ccaactttat
      181 ttaactataa catttattaa cagcagtgaa aaggtcactg tgaagctccc agcgtatggg
      241 ctaaactcct ttccccagtc gtgaatgcca caagaaagca gatcctttaa gatgcagcta
      301 tcttaagctt ccctccgacg gttaaactct tagtaattct aggttttgga gacaaacgtc
      361 aaagcagagg gctcttccct tcattattca agtaaaggcc ccgtcaatat tatctgtaat
      421 aagaatctgc tgttgacatg gctcaccctg cagttcctgt tccaggcagt agtccctgtc
      481 aataggatta aagtggagga atgcctttga caagtccacc ggctgctgat tcattgctgc
      541 catcaggctg ctggccggga aaggaaccgg gcaccattag cctgtcctgt caaggccggc
      601 tggaaccagg aggccccaaa gctttgattt ttgacgccaa aggagacctc cctgaagctg
      661 caggaggaag tagggagagg gaaacactgc cagcagattg cactgctcat gtggctgagt
      721 aatgggcaca tcggctgatg ggagggtttg aggtgatgtg aagaacggtg ctcagctgag
      781 cagcagagaa atcattcacc acacatggga tggtaggaag tgttcctcag tctctgccac
      841 tgttccctcc tcatcagcct gggaagccac attacgcagt gaaatgagag aactctctgc
      901 cctcatactg gagctgctct caataccaag cagcccacaa gaagccaaga tcagtg
//
LOCUS       KCLA01000155             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2525upu ultra-conserved element locus uce-5733,
            sequence.
ACCESSION   KCLA01000155
VERSION     KCLA01000155.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2525upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-5733"
BASE COUNT          205 a          141 c          158 g          268 t
ORIGIN      
        1 ttcctgctgc ataatccgat aatatttttc atttcaatat catgcaaagg caggcttttt
       61 ctaaacctct tgtatttttt acacgggagc gtggtggtga atagagaccg ttggttctga
      121 gcatttcggt gggttgggta cgtttggttg atgttattaa actgtgcagc tgttgatgtt
      181 gctgaatgat ggaatatatg aaaagcatgg gataaaatgt aatctactgc attattagaa
      241 aaaattaaag tagaggctat attttacagt gtcgtctttc aaatctagcc atgctgtaaa
      301 ctgatgtttg ctgtatgctc ctcctgattt gaaatagatg aaagagaatg aacctttaat
      361 caccatggtt cacactatga ttgagaactc ggcgccaaga ccacaactgt accagcaagt
      421 aaggtcttgg atagtgaatg aaattgcttt atcatctgca aagatttcct tagtgacagt
      481 tttggttgtt cctcagacgt atccatgaca tcggtgtttc tcttatttgc tttggaaaac
      541 cacaagtcat ccatgcttta caaaatgctg caatctcgtg agcatggctt ccgctgcgtt
      601 tttgttgtcg agtattaaat ctacactctg gaataacttt ctctgtctag acaatttcat
      661 gagttgatgt tttacgcagg tgtccagtaa attcacctag cttcctataa gcttccaaca
      721 tttgtcgtag catgatctct gcaattagtg ctcaaaggtg cttctttctt tt
//
LOCUS       KCLA01000156             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2541upu ultra-conserved element locus uce-6005,
            sequence.
ACCESSION   KCLA01000156
VERSION     KCLA01000156.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2541upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6005"
BASE COUNT          224 a          126 c          109 g          203 t
ORIGIN      
        1 acaatgcaat tagtttatag gactagatgt tgagcgttta ccaattattt cagaaaaaga
       61 aggaaaagag agcacatgaa gtcatatcta cttactaaaa caccattcac aaagtatggc
      121 tgggaccatt aaatacattt tgcatggtct aattaacttg gtttacaatc tcaattactt
      181 ttcacccaag aaatcacttt tgttcagttt tattgtgtct gtttccctaa aaaaaaatga
      241 tgtagggcac cctcagacaa gtgaactcta aacttcattt gtctttcagc aggcttgatg
      301 gctatgcatt taaaaaccca ttctatctta taaactaaaa attaaatgta ctcagctgtg
      361 atggtcgtca ttgcatctgc tatttatatg ctaataccct cactggaaga tcttgcaaat
      421 tattacacca tgccaatatc tcatgtgcat ctactcaaag ccagctaaat atttttctag
      481 aggcagaaga cttcagttca ggaaccagaa tatttatcgc tgtagaagct agttaaaggg
      541 gcacccttaa gcaaatacac aatcacaaca caaaataggc ttcagtcacc ttatatgaaa
      601 tttgaggata ttctgtgtaa gcaggcagtg actgggtgaa aataatttct tcaatgccag
      661 ta
//
LOCUS       KCLA01000157             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2556upu ultra-conserved element locus uce-385,
            sequence.
ACCESSION   KCLA01000157
VERSION     KCLA01000157.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2556upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-385"
BASE COUNT          228 a          217 c          259 g          257 t
ORIGIN      
        1 catgaactgc ttcataagaa ttttgagcta attttgagag gcctttcagg agcaagacca
       61 cagccctgta gcccagtttg gctgcagcac tgtcatattt tagtactgtt gattgtgcag
      121 actaacggct tggctggcat ctgcttgtgc ttctgtccgt agtgtgcttt gtctacaagg
      181 tcctgtggaa cagtgggata ggcatggagg gcagccccag ctttgttaga agctggctag
      241 acaaaaagta gaacttacat ggctacaagg atcttctcac acactgatac ttgcagcttc
      301 tgctgcatct aacatctgtt aacatgatgc tttttttccc tctgccacct ttaactcttg
      361 tagatcctag ctaccgttct ttccactctg gcggatatgg gcaggatgcc ctgggtatgg
      421 accctatgat ggaacatgaa atgggtggcc accaccctgg tgctgactac ccggttgatg
      481 ggctgccaga ccttggccat gcccaggacc ttatggatgg gctgcctcca ggtgacagta
      541 atcagttggc ctggttcgat actgacctgt aaatcatcct ttaggtaaga aaagcttcca
      601 gaaacccccg aaccctaggt gcatcaggct atggggtggc agggagggat ctcatgggag
      661 gaactaactg gagaggctgg aattaagcca cccctgacca ctgtggttct ctgcagctgt
      721 atcatccgac tgaacttgca tcgattggcc tgtggagttg ctgagagggc tcgaggggtg
      781 ggctggtatc tcagaaagtg cctgacacac taaccaagct gagtttccta tgggaacaat
      841 tgaagtaaac tttttgttct ggtccttttt ggtcgaggag taataacaga aatggatttg
      901 gggagcgagt cgaaaagcaa tgaacgcatc agagtgagct gtgggatgga atttctcaaa
      961 c
//
LOCUS       KCLA01000158             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2570upu ultra-conserved element locus uce-985,
            sequence.
ACCESSION   KCLA01000158
VERSION     KCLA01000158.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2570upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-985"
BASE COUNT          312 a          184 c          211 g          281 t
ORIGIN      
        1 attacagcac tttccctatg aaaccttttt gcacaatttg caggaatttt gtgaagtatc
       61 ttgatatgaa aaaatgtata gaaaatatat taactgaaaa taacttgtag tgaataaaat
      121 ggccttactc ctatttcctt agtccacaca gcgaaattgg gaagtaatct gtcctccaaa
      181 atccacgcta caaattcttt ctggatcctg aggatagctg aacctcagca gaagcctcag
      241 gctggaggag ctgtaacaga atggctggga caggagaaaa tacaaaaatc tcccattgta
      301 atggtcctta ggttagggga taaacacagt attgagcctt aacagaggag agtaatatag
      361 cagtttttaa gaggctacgt ataagtggta gaggatgaaa ctgatggttg aagtctaaat
      421 aatagtacgt atctcacaac ttgttgaaaa gcactttttt cattggggga gattcacagc
      481 tgctgaattt tctgcagtta atagagtcct ttgattcaca gcagtgcccc ttgcacaaaa
      541 aatactggcc tttgtgtatt accagaaact aattttctat ttggctgaaa agggaaaaat
      601 ggggttattg cttctccctc ctacagagct tttcattatg cctgatgcac tcaacttcta
      661 agctcttctg cgaaaaaaaa ataactgaag aggcaagagg tagaaaaatg agcttgttag
      721 cacattagaa gtgaagtgtc ttggtgggcc ctagaaattc ccagtggtgt gttaacttat
      781 cactctatgc atgctggcac tgatagtctc ccaattgatc actctctttt cgcaccaaag
      841 gtgctgccag gaagcaaagg ctgaaggccc acaggagaac aggctgctat caaaacaagc
      901 tgtttttaaa agtctgcttg aatgggtaaa atgtttcagg aaaaagtagg gtggagacac
      961 ctacctgctt ttaaatgctc tactttca
//
LOCUS       KCLA01000159             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2585upu ultra-conserved element locus uce-1644,
            sequence.
ACCESSION   KCLA01000159
VERSION     KCLA01000159.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2585upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-1644"
BASE COUNT          267 a          235 c          241 g          195 t
ORIGIN      
        1 gagaaagcga cggcctagcg tcacctcagc cgagggacgg cgcaggtgca gcggaacaga
       61 agcctccccc acccaaacgc tcgagcacgc ccataaattc acacagagag cacggcggcc
      121 ccgtctgacg ccgcaaaccc gcttcgttca gagcgcgagt cctccggagg agaccccgtc
      181 catctgcggc gccggccgtg cttcacagag agctactttt ggggagcgaa caaagttacc
      241 cgccattttt taccccaatt aggaggggtt ttggcattta tgacttgtta accgggcctg
      301 cgtagcgcga tctgtttagc tgggtcacgg ggaaagccac gcttcccagt taacatgatt
      361 tgtgcacggc gcttgaccac ctcgacgcct tggcggagga agaaggcggc gattaaacgg
      421 tttcaaatga ggtgtcctgc tgattttatc aagtctgctg aatgtataat gaaaaaggag
      481 aagctgacag tgacactgtt gagaaaatac aggctgcctt atccgaacca tttaaggagg
      541 tccaattata gatcaaattt aaagggtaga ggcagcagat ttacagacac aaatcaacgg
      601 acgcggcgat cccgatgaat atgacagata ctcctgttac aggatattgc cgcggctgag
      661 gatcattacc tttacagcag cacatagatc acctccaaaa gcaggacact aagcgtgttc
      721 tcgtgttaca ggcaatgact attcatttac acctcagagc tagccacgag tccatttttt
      781 aactgctgga actgggaata aagaacattt tgaagcagct aatagcagaa atgaagtgct
      841 gatgcaaaca gctggtatca caacaaatca cagataaaag ggggtctact gatccttcca
      901 gcaaggtcac agagaggcat gctgcaaagc aaacacgg
//
LOCUS       KCLA01000160             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2599upu ultra-conserved element locus uce-8005,
            sequence.
ACCESSION   KCLA01000160
VERSION     KCLA01000160.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2599upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-8005"
BASE COUNT          292 a          185 c          200 g          271 t
ORIGIN      
        1 agataagtat agcgggatgg ggagggacaa acaaacccaa agatgacaga tctgtacaga
       61 agctgttagt atgccagatc ttattacaga gcagtgggag gccttgtaca ctatgtactc
      121 gctcttaggg gaccttcata tttaaaacaa gatgaaaaaa atgtgatttg aaaacccctc
      181 atgggcagcc ttcaaaggca cagacaggtt ctgactggat taacatttat tgactgttta
      241 agcctgcttt tttgcttcag gacagagata catgagttta attgcagagg ctgttctgcc
      301 aactgatcac cagagtggca accaaagctt tactaatcgg tccttcatta aagaaaagtc
      361 tctattacaa aacaaattaa gcatgctctg atcctaacct acaggtccaa tggcattaca
      421 gtaaagttta agctgttaga gcactgaaaa acttattaag gtttagcgct gagatagcac
      481 ttttgtattg attttacaat acacaggtat tatgatttat ggagtgctag tgtcactcta
      541 acaagctgaa ggacacacaa tatcatctcc aacatcatta aaattcagaa gcctctagaa
      601 ctaactcatc aaccattgta cattgtcaca gactatagag ctgtattcca gttggaaaat
      661 gccctgagct ttctggacag ttgtatttgg gaatcattta attaaaccag aaaaagcagg
      721 agaactcaaa cttcacgtac attttatcaa ttcgagtgtc cagtcggtga gatagaatgg
      781 caccatcact gtcacctgtt ccaaaatgag tttttctgcc ttctgttgcc tgaatcctaa
      841 agtgctagtg agtaccgtgg ttcaccgtgg ccgaaagagg aagagcaaag cgaggtgtag
      901 ttttagtccg ttctgcctgc tgaatggttt cttttctcga ggtttgtg
//
LOCUS       KCLA01000161             996 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2614upu ultra-conserved element locus uce-6480,
            sequence.
ACCESSION   KCLA01000161
VERSION     KCLA01000161.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>996
                     /note="ultra-conserved element locus uce-6480"
BASE COUNT          313 a          160 c          174 g          349 t
ORIGIN      
        1 acaactcttg acaaaacttg taagttttgt ttgcatagac atactaacac agggtatgtg
       61 tgtcttttcc tttacgtggt tttaaatcac tcctctgaag tcagagatga caagctaaaa
      121 cccgtaaaaa ttaccatgtg ctgataataa atccagtgac atatgggttt ctttgatttt
      181 gttttcctta actgcattgg gtcttgttgt aaaatggaag tcatgatggt aaataattaa
      241 taatctcttc ttttggaaga agatcaagta aatccattat ctcagtcttt gatactgttt
      301 accatgagtt tttatgagca cacctgtgga cttacaaatg gtagagtagt aaagggattt
      361 attcattgaa taaatcattc ctgttttaaa taagtaaaat aattttaagc tttacctttg
      421 aaaaattaaa aaaaaagaag tggtaaatgt gtatgtccag ctgtgattgc ctcgtatctg
      481 atcagaaaat catctccttc gcagtttcga tgtcagaact gctcatcttc gcaagtctgc
      541 tcacaagatg gcacttttta tcaggtaaga ggcactcaca actgtacata ctacagtcat
      601 ttaggtccca tcagtgcttc aattgtaaac caaattgtgg agtttttata agtccgtaca
      661 acaaagtgct aaagcacaag gacagagcat ttttgttcca gcagagtagg ctttatagaa
      721 tggataaata aaattaatac aaaatattta aagatttctt tcattagacc acttttttat
      781 tacagagcta ttgttctgta ggctgatttc cagactgaca tggctggatt atctactttt
      841 ttctacccca tcttttaaca ttatcactag ggagtcactg ataatggaat tgtttgctgt
      901 atgattgaga attttgattt gaagtaattt ttaagttact ttggaactat tttgcatgag
      961 aaaaacgttg aagttaatca tagagtatta ctccct
//
LOCUS       KCLA01000162             937 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2630upu ultra-conserved element locus uce-5327,
            sequence.
ACCESSION   KCLA01000162
VERSION     KCLA01000162.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2630upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>937
                     /note="ultra-conserved element locus uce-5327"
BASE COUNT          267 a          237 c          202 g          231 t
ORIGIN      
        1 actcaacctc caggaccagc acaggctgct gggctcagca aattctgcgc tggcctttca
       61 cctctgccta ctgtggtcag gtagcaaatg agatcttaac tgaatgcatc tgtaggtctc
      121 cgtttgctct ccagggactg gaaattcata gaacgaaatc attacacatt atatcactgc
      181 gttctgcatg aacgttaggc tctactcgta agaggaccct ggactcagct aatataaata
      241 acgaacggcc tcctcttttg tgaggggagt cagaggggag ggcacagaaa cgttcgcagg
      301 cgatagttga ggcaagggct tgtacagacg ggctgcaacc tctacttgcg atgagtctgt
      361 cagcctcagt gcccttaact agacagtcac aaatcctcac cccaaatccc ggactctact
      421 gtagttacag taatgctggc acaaaaaatc acttttgttc caactctaaa attgctgtca
      481 aggctccaga gactataaac aacatctttc actgctctga cccccatgca attttaaatc
      541 ccccaacctt tctgagcact gttggtgagc agccccatta catcttaatg actgtcatta
      601 atttctaaag agtgttaatt tcagattttt aatcacccct taactattca attaaatttc
      661 aataaaatgt taagtactta caagtctcct catttttcct aaaatactta gtacatgagc
      721 gggactcgag tccagcggta aaagcgagcg gaattaagcg atacagcgct gccacggcgg
      781 ctgccgacaa aagagccgct gccgagcacc aacttcagca cacggagcct acgagagcat
      841 cctaaggctt tggaggtgga ggggggaaat cccggttttc ttagagaaag gggacaacaa
      901 gaaccgagct taaacagaac cccaaacagt tcgttgc
//
LOCUS       KCLA01000163             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2645upu ultra-conserved element locus uce-343,
            sequence.
ACCESSION   KCLA01000163
VERSION     KCLA01000163.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2645upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-343"
BASE COUNT          302 a          170 c          174 g          247 t
ORIGIN      
        1 tacaaacgga attaaaacgt ttgctctgtt tggggcgaga tgataaacag ggatttttca
       61 atcttttttt taatgtgaaa aatgaaagaa aaatgttcct ctagatgtat tatgcctttg
      121 ggctccattt gagggaagga aaaaaaagga gaaagctact gtgaaggtca cagagtgaaa
      181 gaacttcctc agggcacaga ataaattaaa tcccaaggaa aaaataaaat gtgatttcca
      241 gagtgtgagg cacaaactca aaatgacaat gattgacagc caaactatat ccgtgcaata
      301 tcgaagactg cacgttctca tttacctcag tgtagccagc aagcgcccat taaacatccg
      361 tctgatgccc aaattaacct tcttggcaaa ctgaaagagg cacaaactat cataatcaac
      421 ctttcattat cacagcagcc tctagttaaa gggtcagaat aattgtgcca tcagagccct
      481 gattgttttc aatcaacaga cgactggagt gacagctcag tgatggagta gtttgatgaa
      541 accgcaccag gcctaatcag agcagatgaa aggaaggcat gattggtgca aatgaacagt
      601 cgtgcctctc tttttcattt acaatctgaa attactctta aatttacagg gttttttctg
      661 cctatgagta cctctgaaag aatgtttgac ttattatgag ttctgacagt gcagagttac
      721 aaaacacagg taggtttttc agcccaggct ttaagtgggt attcagcata attttaacaa
      781 attcactctt gaaaagcaca aaattactaa agacttccaa tgacctaacc tttcagtgct
      841 gtttgattag cagaacaatt taccacagct cacattcttc ataagagaag att
//
LOCUS       KCLA01000164             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2661upu ultra-conserved element locus uce-6657,
            sequence.
ACCESSION   KCLA01000164
VERSION     KCLA01000164.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2661upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-6657"
BASE COUNT          268 a          114 c          124 g          251 t
ORIGIN      
        1 tttccagaga agtatcacat cacaacaata atacaattac tcctcattgc aatccttgag
       61 cgctactagt taaataataa atagagttcc gattgatcta ttgttaaaat ggccagtaaa
      121 tggccttttt attccaatta acaaatcatc tgctaaatct atgaatctta atattcagat
      181 ctattcactt caattcatac aatttatctg caaatagttg ttgggctttt gattctaaat
      241 ataattagct gataattttg cttggctgaa ttacttttct ggagggcctg cgaaggctct
      301 cagtcgcatt atctagcaat aatgaatctg ataggtgaaa ttttttacta taatgaggat
      361 gagacacagt tgtgacacct gagtctggta ataacagagg actgctaatt atcgacagca
      421 cttttttgtg tgatgctcag aaaaaaaaaa atccctcatt attagaaaat aaaaagttac
      481 aattataagt gacaccagag gagagtaaat aaaatggagt gattaaaaca ttgctgcttt
      541 aagggtgttt ttaattaagt ggaaatgcta atgttgtcat acttagcaga tgggattaaa
      601 attagttatt gtaagtaact catattttat gttatggttt ccacagcatg tctacaagat
      661 ctaagaaagt gatacattcc ataagacatt tcaaaaatga aattctcata gtctttacag
      721 ctcataataa tgaacgtcat gaataaacta ttgaaaa
//
LOCUS       KCLA01000165             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2677upu ultra-conserved element locus uce-5489,
            sequence.
ACCESSION   KCLA01000165
VERSION     KCLA01000165.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2677upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-5489"
BASE COUNT          191 a          208 c          160 g          189 t
ORIGIN      
        1 agggggactg gactgggtga tcttgtgagt tcccttctga ttctatgcac aagggtgagg
       61 tagctggaaa tactgtggtt tcagtgctct ttctgtccag ggcagagccg agcccactcc
      121 ccaccatcct tgtcctgtac aaggcatgtc gtggctctct ttaccctccc tgtcaatggc
      181 tgctctcttc catcaatttc atttagaatt atactataga tcaatgcagt tcaagagcag
      241 tgtggctccc gccaacggtt gactgcacat atattcattt aatagagctc acactatgac
      301 aagtattggc cagctgcatt tcctctccac ttcagcagtt ccttccatca ataacttctc
      361 tcatcggccg cttccctcct atccagaaaa agggggtgtt ttctgccagc tcagctttca
      421 atagtgatca caacagcaaa acccgaacaa tacaatcctc ctgctcctcc aacaccgcag
      481 cgggtttgac taagtcattg tactgatgtg atacatttta aacctggctt aaccaggcta
      541 taaacacggg agattaaaca agtaatgaga gagctgcaga aagccagctc ctcaccccca
      601 cccagccctg ggacctgtaa aaaactactc cccgtgaagt ctcacgcagt tcagcgctag
      661 aaggagtctg agtcagcagt cctctagaag gctgagtttc tcctgcagct gctccgccga
      721 gcaccgaagg caaacagatg aaggaaga
//
LOCUS       KCLA01000166            1105 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2707upu ultra-conserved element locus uce-1004,
            sequence.
ACCESSION   KCLA01000166
VERSION     KCLA01000166.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2707upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1105
                     /note="ultra-conserved element locus uce-1004"
BASE COUNT          323 a          195 c          190 g          397 t
ORIGIN      
        1 aagcaaatgc tttcttctct cttgcttgct ttcctgccaa aagagagttc tacttgtcac
       61 aactttatct ataagctttt agaattaccg tgcatgtgga ctctagttaa cagcaactga
      121 aactgcaatg gtattaataa cagtaaacac gtattgaagt tattgtttct acatagaaat
      181 actgctaatt ttttttatgg agtttctgca aaaatgttaa taattggaaa actcagcttt
      241 agtggagcat acactgttgt ttgatcaata atggtttttt gctaccactg acaaggcttt
      301 tgttagttcc aattctgcaa ctttgaagct cccttttcaa ggggtatctt tctgacgaat
      361 gtgcagtttt tcagcatgta ccttctgtct tgtatcacaa tgttttagaa gaatctatgc
      421 tttacttatt cactaggctt tcaatagaga atcacattaa tccttttaag ctccttattc
      481 taatgattta ttttgttgaa aaccgtcgtg atcctccttt gaattttaat gattgctggc
      541 tgttcaagga ttcattgttt tgacttcctg tccttacctt tgtttcttac atgtctgtag
      601 ggaacacctg tctaatactg tatctggcct tagttctcac tggcttacca tattcactca
      661 agcctatctt aaggcgttaa gttgaaatgc tagctactca tccatgaaaa taaatgtagg
      721 atatttacag agataggcag atagacagca gagggatggc tgagtggatt gagtcatttc
      781 gaggaaaaaa taatactttt atatgaatta tatcaagacc attgttgcaa agtttgcttg
      841 gtttaaagtc agcactttaa aaaccattaa acaacaacag ctatgaggga tttatcctgc
      901 agaatctttg aagcaaatgc agtatgccaa cagttgtcat gatttggcat cagccactga
      961 atttaggttg tggcactgcc ttaaattgga tttcagtttt cattttcatc cactctgtat
     1021 aaatacagga tgtctcttta gaaatataac ttggaacatc atgagttttc aagaatatat
     1081 tattctaata caagatttta acaac
//
LOCUS       KCLA01000167             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2723upu ultra-conserved element locus uce-4945,
            sequence.
ACCESSION   KCLA01000167
VERSION     KCLA01000167.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2723upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-4945"
BASE COUNT          233 a          163 c          178 g          282 t
ORIGIN      
        1 tcctgaaccc actccaaagg gaatttttgc actgctgctt acaccccaga aatgtgttca
       61 gggatcaggg ctatacccat caaaaaacca ttttaattcc tgtaagatca aacgatttga
      121 agtttagttc tttagagcct ttcaggcatg aggattgtca tgagagtaga tgtggtacat
      181 gttcatttct tatgggcaat ccgcagagtc tgggtgcatc acttggcctt gccctctcct
      241 ggtgattatg tgtgagaaat aagtttgtct tacatggcat agatgtcctg tgttagcaca
      301 atgctttata tatttcaatg atcattgaca gtactgtggg ggtaaaacac tgaataatat
      361 ctattttttt taaacagaag gccatcatta gccatgtctc acctgacatc ctttatctgt
      421 tcagagttca agcagtttgc cgaaatgaaa tgcgtagtga ctttagccag actatgcttt
      481 ttcaaggtaa aacacccaca tatgcatttt tgccttaaat gactgtttgt ttaacaattt
      541 atgtgtagag tgcagtatgg tatggaatga tttgtaagat gcttgcatgt aaacaatggt
      601 aatgcttgat tgtggccagt gactttgaca aagtcctatt tctagtcagt ccgtttcttg
      661 tgcctctctg ttagcaaggt tatccagatt ttaggagaat tctgagcttt tcttggtaca
      721 agttttctaa accaaattca tccgagactg cttatgcatc agaggcacag ctatagcaga
      781 atgtatgtct gttttacgta aagaggaaca gacatcagtt ctaccttgac aaccacatgc
      841 cgagaggctc ggtttt
//
LOCUS       KCLA01000168             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2737upu ultra-conserved element locus uce-885,
            sequence.
ACCESSION   KCLA01000168
VERSION     KCLA01000168.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2737upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-885"
BASE COUNT          213 a          166 c          150 g          216 t
ORIGIN      
        1 caaaactaag catagctctg agctgcaaaa ttagcaagac atttgatttc aaagtgagag
       61 ggagttttta ttgcaggtaa tttttgcctc ttaaacctat gagattcggg gtgaaagcag
      121 gcagaaccca aggcagatca gggcctgcac tgggagaacc cttgccagga gaggaatcga
      181 ggactgccca tgctacctga gcaaccaggt caaacatgtc cccagtaatg aagatctatc
      241 cattaccata acatgcaggc taacactgta gatcactttc atggtctcca aagaagcaga
      301 gcagttatca gtaacattca aaaatccact ggaaagtcat ttatttcact ttatggtcct
      361 aattagccat ttgtatagtt ctataattaa atatgttcct ttctcatcaa gtttttcact
      421 ttagtaatga taccactgtg ccacaaacag cccccatgct gtttggtttg ggacttattc
      481 atagcattta attggtcacc cagtggttag ccaataaccc cttctatggg aagcaacact
      541 ctgaatgctg ttaatgggct agaggcacag tgattgcctc ctggtacgca gcagtactgg
      601 gaataaagca atttcctcca ctgtgttgtg tgcccaatag ctaatcctct acactcctga
      661 aatgcacact atttggttat aagtatttgc actggcttac ttaccgctgg gttgttaata
      721 gacagtgatt cttcaatgct ccttc
//
LOCUS       KCLA01000169             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2751upu ultra-conserved element locus uce-3569,
            sequence.
ACCESSION   KCLA01000169
VERSION     KCLA01000169.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2751upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-3569"
BASE COUNT          248 a          148 c          167 g          250 t
ORIGIN      
        1 acagagatga gaaccacagg atgaactgaa ttttctacaa attttatctt ctaaggggaa
       61 gcaaaccctt tataccacag tatctgcgat gagttactcc tagtactgcc ttagcaatga
      121 taccaggaga gcattttatt ctgcggaggt gaattgctcc tctgcacatt ttccttaaga
      181 ttctggagct cttggattat gttttgtaaa tcagttagct tcctagccag agattaaggt
      241 aaattctgct aaggactaaa agttgactta gagcattaag aaggattaat gtttagctgt
      301 ggtgaagctg aagtactaag ttagcgtgtt tacgcagtgc tgtagatcac aattaatcca
      361 aaattagtat aaaagatcaa cagcaactgc tcttgcatgc cagcttggct tagccctaaa
      421 atcaagactt actttggggg caatcagtgt gcagagtcac tgtgcgtctg ccctaatagg
      481 tttaaggctt tcagaggaat ccatgcattt taaatgtcta gcttctttgc cctctgcttc
      541 gagaaaataa atgtagaagt cagtactcct tctgctttct atctgtgtca cagatagatt
      601 ggtgctagca gtgaacaaaa gcaaatacga gttccccgct tgcagagaaa agatgtttaa
      661 gatgcttttg ctcatcatca gggattaata ataataacag ggattttctg gcagcaaata
      721 tttctgctgt ataactagta aggtaaaaat acacatagat gcccagatat attcttatgt
      781 atgggaacag gcttacatag cttttttaaa act
//
LOCUS       KCLA01000170             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2766upu ultra-conserved element locus uce-2895,
            sequence.
ACCESSION   KCLA01000170
VERSION     KCLA01000170.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2766upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-2895"
BASE COUNT          268 a          120 c          161 g          295 t
ORIGIN      
        1 caaagcatgt tttgcctaga agatctcttt tacaaagtaa atgtaaaaaa atgttctttc
       61 tatgggaaat aattcctttt tgtgaattat tttgttaaat tagaaaagcc ttcaaaaacg
      121 tcctcatatg atgatagtgt gtgaaaaatg taaaatatat tctagggcag atgagtgact
      181 ttttcattgt tttattgtta gtagaaaatg catttcaaaa gcaaagtaac ttgttagaat
      241 ccacatcttt acactgctac tgaaattgtg ttttgatttc tttgacatga tccctgattg
      301 ctgtgagaag aatcagttca gtatttttgt tcttagattc cccctccttt gtcttgcagc
      361 tacttgtggc agattccatt aacaattgca gtaggaaata cgagccacat ctcatcagag
      421 gcaattatat gggtgtctaa caaatcaggt aaaaataaac tttcctccca gtggaatctc
      481 ataaagcata cttgtgtttt cctcaactgt ttctttggaa ttgatcctag ataattgttc
      541 agttgctctg cacacagttt tagctacttg ctttacagaa aaaagagaga tgggaaggga
      601 gggaggagga aggaagtttg agcaacaagc aagttttatg gttattacag aagttagatg
      661 gtgtaatgga aagcttttac atagaaatgt gtgcctaagt gctaagtatt ttgtatttaa
      721 ccaaatcatt ggtgaatgca attcacatta tcgatttgtg aaagttagct aatattttta
      781 tagcaaagct tctgatgagt ttgacttagt aaatgaaaag tatttagaat tctggcattt
      841 ttaa
//
LOCUS       KCLA01000171             605 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2780upu ultra-conserved element locus uce-1709,
            sequence.
ACCESSION   KCLA01000171
VERSION     KCLA01000171.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 605)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..605
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2780upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>605
                     /note="ultra-conserved element locus uce-1709"
BASE COUNT          199 a          102 c          104 g          200 t
ORIGIN      
        1 gtgagatgca ccatattgac actcagaaat cagtttatac ttgtccttgt ttattggatt
       61 tgattgagct aaacatactg taagattcat ttttgagatg acattctcat atcatgagtt
      121 gtgcaaaagg ttatcttgaa atagagtagc tgcaaaacct gagcaagagt atcagaatct
      181 agtccattgt aaataatctt tcataaatct tcaaatcttt ctatacagcc ctctcagtag
      241 ccagatgttg attgtgtaca cattgttttg tgttgcttgc ataaacatta taatcacata
      301 tagacaacag cagagctaca atatttagaa aacatttttc acacctcctt attaagcaag
      361 actatgaaaa ttatgactca tcactgcacc attgtttttg cctgttttct tgtgctggtt
      421 gaatagtcat agacagctgg tattaataca ataggtagtg cttagggaat taatgggtga
      481 tgtataatac accacaaagg tatctgtcat ctggaacaat aagcgcaatg atgtaagatg
      541 tatatatttg aaaattgtac tcaaacgaga ttttctcaag cacaaagaca taccttgact
      601 gcaat
//
LOCUS       KCLA01000172             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2795upu ultra-conserved element locus uce-4023,
            sequence.
ACCESSION   KCLA01000172
VERSION     KCLA01000172.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2795upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-4023"
BASE COUNT          313 a          174 c          206 g          296 t
ORIGIN      
        1 aatctcatta agcaacgtta cattgtagtt tctgatcaat tatttcatta catgtcacca
       61 ctgaagaatc aagtaaattt gtaaaaaaaa tagttcatta gaaaaaaggg actcttaaag
      121 gggatgattt ttttttatca acaaatatca aatgttttga ttaaaccata tttcaatagt
      181 acgttacatt tcaaccccaa ctgatttgac acattttcct ttctgaaact acctttgata
      241 agaaatgcat tacaaactca tcagtttagc ttcctgttaa caaagagaca gcagccgtct
      301 ggattattct agatccgcag tgaaactgcc acactatgta tgctcaaact aaagctgtgc
      361 aagtttgaca aggggcagat gaatccagga gttattgtgc agaggtttaa gtctatgcgg
      421 cagctgacgg ttgaaataat catctataca tcgctctgag ctagctgggg aaaggttgaa
      481 gctgtatatt ttcaacatat ctagcctaat ggttaatctg ttgtcttgta cagggggtgc
      541 tgggtggaat cacagcaata gctgacagtt tggaggaatt gctgtgggta ttttcagttg
      601 cctgattcac aaagtggtag gtagcaaaat ctaacaggct tgtcattgaa agagggatgt
      661 catgctcact ttcactccca tcaaacgaac tctggtagcc aaaaactcaa tcaacatatt
      721 gattatttgc atttagtaat acagagctgc aaccacccag cccatgaacg atgagcttta
      781 tggaaggcat accagattgc agtgtggtga ttgctccttt ggaggtcagc tgggaagata
      841 cttaggagaa agagaatggt taagttgggt agagaaataa aatacttttt caaacaaaga
      901 tagtttaact gttaaagaca ctctatattt ccagtgctgg atgtggcgta tctgcacagt
      961 gacatggcat tactcactgc agagtttaa
//
LOCUS       KCLA01000173             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2811upu ultra-conserved element locus uce-7527,
            sequence.
ACCESSION   KCLA01000173
VERSION     KCLA01000173.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2811upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-7527"
BASE COUNT          275 a          158 c          159 g          264 t
ORIGIN      
        1 gcatctctgg aagcctattt tggaagtgat ttttttcatt tttctcactt aagcaagatt
       61 ctactgcagc caagtaaaaa ttgtattgct gtaaagtaat tgtatgagtg agtgctcctg
      121 tttaagtgaa cagtttatgg ttactatatt aaagtgaaca tttcaacttg gctaacacaa
      181 ccactgaata aacacatatt gatattatag aacaaaataa tatattagtg cattgctcat
      241 ttgtgctctg atagtcaccc tgatactatt agtcatgcgg agagtgacaa acacaattac
      301 actcgagtgc taatagagtg gaagggcaaa actgcctgac ctcggcatcc tgggtcgatt
      361 taaatgtttg atgtctcatt gaattagtat cacagtgtga aagacaaagc tcaaactaat
      421 ggaaatgagc ctggacatgc aatactgctg attgggctga cataattaga ataatattct
      481 tcacacagct aataacaagc agaagaaata aataaccaag agataactta atgactccat
      541 gctaaaatgc tcctttgaat atgctaaggt tagcattttc tatttactta ccgagcattg
      601 ggggaatttt tttctgtgtg taatcattag ctgtggtgat cagcaccgta ctggtcacta
      661 aggccatatg aaactatgca cgttgaccta acttttcccc cctcaacatc attgtttaac
      721 cctcagggca ttgttactag tgttggtctc tcatagagaa aggtggtaaa aaaaatgctg
      781 acacatgata cattcataaa tatagagctt gtatcttctt acactggcac cttaacccct
      841 aaggtacaga gctata
//
LOCUS       KCLA01000174             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2840upu ultra-conserved element locus uce-2348,
            sequence.
ACCESSION   KCLA01000174
VERSION     KCLA01000174.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2840upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-2348"
BASE COUNT          225 a          133 c          136 g          207 t
ORIGIN      
        1 ctgaggtccg tttcaaccta agccagcttt gcatggggtc aagctcctga gcctctgtga
       61 gggtctgcat ccaccttgca aacacaacga ggatttgtgg aactgaatgg agtaaaatat
      121 tccagttagg gagaagaaat acatgtgata ggcatgaagg cacagagccc agacttcatt
      181 aaggtaattt ttatattttt aaaagcagta ttaaaaaaca ctggaaaatg caagataaat
      241 gtaacagttg cttctacaag ttttcacctt gtattgcttg gccattttga catataaatt
      301 attgcttact agctctcata aatacacaac acagtaatat gtacagaggc agacaagcac
      361 gaaatatgaa aacattggca acatcgattc tggtaaatca gagtatttca tacataccag
      421 gtctcatagc ggtggataac tactagctgt agtccctgag aagttaggca aataccttgt
      481 ttggggattt ttatttttaa tgcaagctga cagttttatg gcactcagag agaacagaga
      541 ctgttctacc tcagctcatc ggcctcaccc tagtatttac cagtgcatga ggtgacaata
      601 aataggctat gcaaataaat attattctgc taaaatgttt agtatttaca tcttgctttg
      661 taatcttaca gcagcacgac ttatctttgc taacaccaat t
//
LOCUS       KCLA01000175             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2854upu ultra-conserved element locus uce-2688,
            sequence.
ACCESSION   KCLA01000175
VERSION     KCLA01000175.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2854upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-2688"
BASE COUNT          227 a          134 c          113 g          226 t
ORIGIN      
        1 tcttgagcat gaaagctgtt gtaagaatta agatatgtac caaagaaaat gcagatgctt
       61 atttatttag ttgttggaga catacaacct agtttacatg acaatggatt atctgacggg
      121 ggaatattta ctatatcttt aaaaagcctc tctgtctctt tttctaattc tttatagaat
      181 gctttgaagg ctctccaaat taattttttc attattaagc aagcatttca gattcgttat
      241 cttacctttc ataatgtctt cgagtacatg tagcagcact tgtgcttcca gggttaccac
      301 ctaattcatc ataaatatgt ttccattgtc gacgggctgt tatctgtaaa aatggcaatg
      361 gaaaatttaa tctcgcatct ttatagattc tacagcatta gagttcacaa caacaaatgc
      421 atgtgtgaca ctttcagaac agcatgtact acaagcactg taaaagcccc tacagaatat
      481 ataaagtaca cagagctttg ggtgcctttt tatttaagtt aacactacgt ttattttctc
      541 tctctctaaa atggagcgat ccaactgatt cattattaag tcacaagcaa tacagcctca
      601 caaaagagaa tctcaatcaa tacagggtca ttaaccatca gaagttatgc aggcaaatcc
      661 catggtgaat tatgaaaatg aagctcaacc cgtactcagc
//
LOCUS       KCLA01000176             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2870upu ultra-conserved element locus uce-2219,
            sequence.
ACCESSION   KCLA01000176
VERSION     KCLA01000176.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2870upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-2219"
BASE COUNT          239 a          219 c          198 g          204 t
ORIGIN      
        1 aacctctaac cagggcgtgc attgacctag gtgactagct agtgatcaga cttgctgaac
       61 cttgtggctg tgccccctcc acagtgaatc cattcacact cgaggccatg tctcagagtt
      121 gcactgctcc ttggttgcat tgcagcacta ctgggaagta gacaatgcag ggataatcgc
      181 tcctggtcca caatccagag catgttgatc acctcactgt ggaagaactg ccaaccagct
      241 tcctcaccat cactaacacc atcgtctctg gtattcacta ggtcagatat cccccacttt
      301 caaagcacgt gtaaaggatt acagaaaccc ctatatgcat ctccagagag cgggcagaaa
      361 gggttaaaca aaatcaaccc tgacaatact agaaacagtt ctctcagtgt gtgttggttc
      421 actgctccac agggcatagc agatgttgtg tctggtagta agaagggccc aggaggtgtg
      481 agctgtcaat cacttttttt cctaactaca ggctgtgcta tggatatgaa gcacgactaa
      541 aacaatctgt ctcagctggg gtgtgtgagg tatcaataac ccttggcaga ggtgtcaaga
      601 gccttgctgg aatcaaactg ccctgctgac cagctgctta gcaagttaac aaggcggcat
      661 tcagcacttg ctgccctccc agcccaacaa ttaacacaac tggagtgggg ctctacagaa
      721 atgcaggagg gccctccccg cattgccctt atgctagtga caaagaggtt tgcagatctt
      781 tattcagaag catctgtaat agcacacaag gaggaagaga aaccagggca aaacccgtgt
      841 ttaattctca aatcaaatat
//
LOCUS       KCLA01000177             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2884upu ultra-conserved element locus uce-7584,
            sequence.
ACCESSION   KCLA01000177
VERSION     KCLA01000177.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2884upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-7584"
BASE COUNT          134 a           80 c          111 g          160 t
ORIGIN      
        1 aaaaataaat aaaaaggcat ttgagacagc gagtatccaa caacagcaac ttggagtaga
       61 tttacagttc ttcagccttt gctctagccc tggagcctga tgggacgctg gtgtccttgg
      121 aggaatggta gaaggaattg ctaggggcca attgctgatt ttatcattca aacacaaaat
      181 ttgttacacc actttatcgg tcacagggaa agcaattata gtgtggttca attttccact
      241 caatggctgt actggggatc aaagtcggtt ttttatgacg ggcagaagat gttttgctat
      301 tttatttgtt atttaaaaat aatgataata aaaagctcaa gcttccatac gatgctggct
      361 atgcctacgt gcttcttcac tttcctgagg tagaggtggt tatttgttgt taaataatca
      421 gggtgttgtg ttggtggggt tgggattttt ttttcttctc atcactgact aaagtcatca
      481 caatg
//
LOCUS       KCLA01000178             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2913upu ultra-conserved element locus uce-3180,
            sequence.
ACCESSION   KCLA01000178
VERSION     KCLA01000178.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2913upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-3180"
BASE COUNT          187 a          131 c          112 g          205 t
ORIGIN      
        1 aagtttaaat gctaccacta caacagaaat cttttgtttc acttgaagac taaatattat
       61 tctattgtaa aacttcagat tttgttgtct ggatggagta actttcctcc tatgacaaag
      121 acttgaaaga tatatctctt taattaattt ttttcctact tcacgttcac atgtgttgaa
      181 actcattgct tctggaaatg aagatgctct ggtgtcagct gtaaaatctg tatctcactt
      241 cctcagacat gtggatattt attgacaggg tgtgagagag aaagaggaga gactgcctgt
      301 cctggagcca gtaaccttgg tgaagatgca atgtcacaaa caccaagcca tcattctcat
      361 agatgcacgg catattattt aaagggaaac aaatatcagc cactgaatgt cactgcaagg
      421 acacatcttc tgcctcttaa ctaaacttat cagtgctgtg gtttaatatg gtaccttttt
      481 catcctcccc tcaaattcat cttacagagc agctcttgac actcccagag agcagtcaag
      541 actaagattt agtgacgttt gcttcaaaca gatctagatt tattgacatt tgttgcctgc
      601 ttcttctctc agcaactgca cacaggatta agttt
//
LOCUS       KCLA01000179             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2929upu ultra-conserved element locus uce-170,
            sequence.
ACCESSION   KCLA01000179
VERSION     KCLA01000179.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2929upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-170"
BASE COUNT          216 a          134 c          110 g          198 t
ORIGIN      
        1 ttcacacaat taatgccaaa agttgaattt ttccccattt gagggaaaat caaatacagc
       61 acaagtataa aggagggtta ctgaaatgct ttgtaaaatt acactgtata attaattcca
      121 tagtaagaac gtttttatgg tgtgtgttgg tgacctttta ttaccatcaa gttcacaatg
      181 ctggtgggct gccttttaat ccctctgcag acaaaggccc taaataaaca cagatccctt
      241 cctgggaaaa agtcctctct ggttaaatgg taaggaaatg agtaaatcat tagtaatctt
      301 taaagccaaa gctataaact caagttacct taagttaaaa tgaaagtgtc ctgcaagagt
      361 ttcaaagttc tgtcacagat agaaatctcc agctcttgac tccagactag gcgccagctg
      421 ataaacaaac aatttaagtc aagagctgga gaattcccag ctttttcatt taatggcttt
      481 ggccaagagt atttattgcc tccagtttta ttctcactta gctctaagag gaaatttaaa
      541 ctcatcatta tcttaaagcc ccatatgggt cacagtcagc tcacctgata gaactccttt
      601 tactctgcat aagttccact ccccactacc agtgatgtaa tagcataaac taattaaa
//
LOCUS       KCLA01000180             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2945upu ultra-conserved element locus uce-7468,
            sequence.
ACCESSION   KCLA01000180
VERSION     KCLA01000180.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-7468"
BASE COUNT          289 a          181 c          181 g          341 t
ORIGIN      
        1 gctaatctac tcagaactgg aggttaaact agtttaacaa aagtaattgc tttttttttt
       61 tgctgtgtgt atgcttctag ttatgaatat tccttccctg gaaatgccaa atttaagtgc
      121 cactcattta cgtacactga aaggatgaaa taacttgtcc tttcttttcc aggaacagta
      181 ccagtttctt tataaagcaa tgctaagctt ggtcagcacg aaggaaaatg gaaatggtcc
      241 catgacactg gacaaaaatg gtgctgtgat ggccagtgat gaatctgatc ctgcagaaag
      301 catggagtct cttgtctaat cggaaacctg aaaaggcact taatttgtag aacttctgaa
      361 gactgagtga acttttttga ggcctttttt gccagactct aggttataca ataacccaat
      421 tactttttta cactgataaa agttttgata tttatttttt gccattttat gtcttaatgg
      481 tatcctactg agcatttgca cctctgttta tttcacacag tgaaacgcaa ttttatctag
      541 tttgcactat atgatcagtg ttactgccta taatctaata caagacaagc cctgatgtga
      601 cattccatga caacaaacgc acgctttttc tgttttgttt aaatgcagtg aagttttgct
      661 gactacagtg accctcaata cttaaatctt gaatactagg ccagatggat tatttctaca
      721 acagatactg taccccttca taccatattt attattttaa tggttatgtc acagttttgg
      781 taatggtatt ctgcattcca ggggagtgga tgagcagtgt tcatcctttc tcgacaaaat
      841 gtggcaggtg attattagct acaacaaagc cttgtggagc tgaaacaatt atttctgtat
      901 tgtttcagat tgctgttttg tacacttgca ggcctaagtc ttgcttcaca aggaatacat
      961 caattaccta caatataatg ataaatgaga tg
//
LOCUS       KCLA01000181             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2960upu ultra-conserved element locus uce-3222,
            sequence.
ACCESSION   KCLA01000181
VERSION     KCLA01000181.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2960upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-3222"
BASE COUNT          246 a          184 c          136 g          201 t
ORIGIN      
        1 gatgtgataa ctcttcccaa cctgccggga acacataact aacggagaac tctgtaacca
       61 tcacccacct gcagtgctac agggttttaa aaacacatgg aaacacacag caagtacaga
      121 tatggacaca acactaaacg tcactgttct tacttccact aattacacac agagaggaaa
      181 gcgaaatgct gtttcactcg aagtcgcata tactgaaaac ttgacttaag ttccccagtc
      241 cctctccaac agttcgagtg ttagatttag gaaggattcc tttactgaac acaaacacag
      301 agtaattgac atacatggca gcaaataaag ttaagagatg caaatcagaa tatgttttac
      361 tttaacagtg gaagtttctc ctatatctaa cactgcacaa ggtatcttgc acaatgaaaa
      421 tgtaagaagg cccttacact gcctcgcttt gccagagaat caccgtagtc tgctggcaaa
      481 gtccgcttgc tggacttttt ctgctcatgt tcaactgcat cttcaattat aggctcaagc
      541 ctcatctgga caaacaccaa agatgtggat caatgtcttt tcattaaaca gtgaggaaag
      601 atctaaagcc cttttaaaaa ccttctgagt tgcttagaga actgcacaca actcactgac
      661 gttttatgaa aatgcaaaac cctgctgagg ctctggccaa tctccaaaaa tcagactctg
      721 gtgctccaat ttggcagatc aactacattc ccccctttta gatttgg
//
LOCUS       KCLA01000182            1040 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2975upu ultra-conserved element locus uce-1906,
            sequence.
ACCESSION   KCLA01000182
VERSION     KCLA01000182.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2975upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1040
                     /note="ultra-conserved element locus uce-1906"
BASE COUNT          307 a          188 c          209 g          336 t
ORIGIN      
        1 aagctcaatc aaaagcccac agaggccaag tgtcctaaag cttgaactac tgtatggatt
       61 tcactgagac ccgatgcttt ttgctgctca ttttttctct cgcctttcac ctagggcacg
      121 atcgtaggtt aatataatgt aaatcaggaa ggtctgctgt gccctttgag gaaccagacc
      181 cgtagggtga ggtgccttcc attccctgga tatactgttg ggataagaac tactttcctc
      241 acaggagtgt ttaaagctta attttttata gcatataaag tgctccgagc tctttggctg
      301 agggatgttg tgaaaatgca aagtagtatt attgttgata aattatttaa aatattgtgg
      361 tccattgaga aaatactggt ttgtaggcag tgaagtggtt aatacgattg catctcttac
      421 aggtttcacc agatacactc actcacttac aatggataat tgttagctct tgttgtgcag
      481 atgctgttgc agatggagcc ctgtacctgc atgcatagca aatgaattag actggcaatc
      541 ccctttataa agcataaata tgtaatttgt tcagctgttg taattaaata tgtatgtgtg
      601 aaacagccac cattcaggtc attaatgatg cgccatgcca aattagagct tacagacagt
      661 aatgtacatt gttgtgcaat gagggaattg caaataacat agctaagcct ttcccagtaa
      721 agtgatggat tcagtggctt taaaaggaat atttatattt ccagcatttt gattgcttca
      781 gcctatattt acatcgatgc tcaatgaaaa agatacaatt ggaaggattt ttttgcccta
      841 tttggtttat actctttgaa catgatggaa tacccattag gtacgtgtca cacaacattt
      901 attgggtgta acatttcata cccgtcggta atatgctgaa tacgttgcta tgatcgtgct
      961 taaatatata gtcaattaag atccggtaag taccttttct tctgcataat atagacaaac
     1021 accatatcaa agcacttgga
//
LOCUS       KCLA01000183            1473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 2991upu ultra-conserved element locus uce-1422,
            sequence.
ACCESSION   KCLA01000183
VERSION     KCLA01000183.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1473
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="2991upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1473
                     /note="ultra-conserved element locus uce-1422"
BASE COUNT          482 a          275 c          240 g          476 t
ORIGIN      
        1 cttcaagtgt gttttactat atatgcagac tataacaaaa ttcggacaaa attaatacaa
       61 ggcaacaaaa atcatttagc atatagataa gtcaatttat catggacttt ctactagaag
      121 aaacactaat tttcttggcc atgaccctga caaatgtttc tgaagagcat tctttaagtg
      181 tggtcatctc aagtgttgca agtctctgtt ttctagcttt gtgagcctaa taaacagtct
      241 gtgtcaaaag tgttgtcagt ccattctttg cttgtttggt tcatctagcc tcctgaataa
      301 agcctgcagt ggcagtgtgg tgtgacttag atagctaggc tgacattatt gatttctatc
      361 cacagtacac tttgtcaaaa atcaaataga aggccctttg gaccccttca cctttaccaa
      421 acacaccaca aataaacctt tttatatcaa gcaagaaaag tgcaaatctc tgagagcatt
      481 ctattcattt ggaaccgttg cacaaaaacc ttgtacagca cttcaagcga aaatttaata
      541 ataggcaaag cttaacaagt agtcattaat aatcctgcga agttcgttga gaaaaggatg
      601 ccacatttta tcataatacc tatgttgcaa aaataaaaag cattgctgtt aaaaaattaa
      661 attttaaata ttgccatata aagagtatct tccccaccct aatttactct ttaaatattt
      721 atattgtgtt cgtatacaat aacttcttta aaattaatgc agcttttaaa gaaattcttt
      781 ttgaggaatc ttctatgtaa acattagagc aaatacttta ctttgctggt cagatgtatg
      841 cattaagtat gccataaacc cttctactgg ccactgactc tactctcctc tctctttctc
      901 ctgacacaga gaaaatatta tgcagtgact cgtttctagt gaatccgtgt gattcattgc
      961 ccaattttaa actgccaagc tgctaaattg catcaggtct gccaaaattc attccaggac
     1021 tacgaggaga tatgaaaaat taaatgtcat cttggtacag tggaaaactt ttacctttca
     1081 gagaacagaa tatgctacat tctgtaatga tggatgattg cccatggcta tacttaacct
     1141 acttagtaat gtcatgtagt gtaaagcatg tttacctaaa aaaatggcag aagacataaa
     1201 ctgtatcaag gtctgacatc aatgcatttt cctccaaata aagtgacttt ttatgttgat
     1261 tctctgatat aaaataattt tttctcatca gagtttgtgg acagcacatt atgttgtgtg
     1321 gctaaggatg gggagtactt agctattctc gctttactat caggcacaca atggttttgt
     1381 gctacctggc taagaaatgc tgcaatctat tctagacaca gcttaatcac ataaacctat
     1441 gagaagaaag aataaaaata tctgagctgc taa
//
LOCUS       KCLA01000184             616 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3005upu ultra-conserved element locus uce-2831,
            sequence.
ACCESSION   KCLA01000184
VERSION     KCLA01000184.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 616)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..616
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3005upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>616
                     /note="ultra-conserved element locus uce-2831"
BASE COUNT          206 a          125 c          116 g          169 t
ORIGIN      
        1 gtgccttcgg gatttcctgt gatatcatta tatacaataa caatcctccc cgtgaacagc
       61 attatcttct gagccactca gctccaattg tgcaatactt aaatcgcctc acctcgtttc
      121 cattggccgt gagaggagaa gcaaggagta aacaaacaga ggatgacctt tatgagtaaa
      181 acatctaagc ataaaaagat taatcgaccc ccgtcagcca gtcattaaat caaataagag
      241 ctttacttgt acttttaaag ctcagattta cagtcgggca aattgtgtaa aaaggctggt
      301 aatacagtga cgcccagtgc cactgggctt tggaaagctg acagttgctg taaaatagtc
      361 attaaacaac ctctagaaga gactcatcag cagatgcccc caggtgaagg agagagaaag
      421 ctgagagaat gaaggggaat ctaacatctt agcatgactg aattaaacag agcatattat
      481 gctgattttc agagtcagcc cagtaattta attttcatag cagttccttt gattgtagca
      541 accattttat gaaacattaa taaaacttct tttttatgta gcacacatcc cttttccatt
      601 tcattaagga aaaaaa
//
LOCUS       KCLA01000185             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3020upu ultra-conserved element locus uce-4122,
            sequence.
ACCESSION   KCLA01000185
VERSION     KCLA01000185.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3020upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-4122"
BASE COUNT          247 a          175 c          153 g          243 t
ORIGIN      
        1 caccaccacc cccgccccct agtatttact tttcacatcc ttagctgacc aataagtaaa
       61 gcatgggaag aatcaagcag atatgggtgg ggttctcgga aacagattca ttttctctct
      121 gtgtttctct gctgcggaat agactctctg cttattcaca gggagagagt ttggaaatgt
      181 ttttagaaaa tgcagatgtg cagagcattc ttaataagga tgggaaaaga gtttgcactc
      241 tccttttaac cactctctca cctcagccct tttcagcatg taaccttatt ctctgtggga
      301 ttacttggat gaaaaccaat tagagaactg ctcacacaat ataaatgcat acagattagt
      361 acagattgaa cagtaccatt gccaactaat catacagtat ataaagtccc aaacaatata
      421 gatattaagg aatgatgggg aaatggactc acattgttag agaactgagc acaaaatgga
      481 aacagcataa aactctttat ttaaataata aataaagtat aggttttctt ttcccccctc
      541 cttcttttct tccctttgtg gcaatctgcc cacagacaaa ctaagtacac caaagaaaag
      601 tcaggcatgt tttcctgggt ataccccatg ccttcatggc agcattcctt cacggttctt
      661 ttctctttta actggatgtc ccctgaatat tcttgaatac aatgcttatt gtccagctag
      721 gatgagaatg agaaaccagt ctcctctgag caggatgcta atgccactgt aaggtgtctg
      781 ggaggggcaa tcagactgat tataactgag ttatttta
//
LOCUS       KCLA01000186             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3036upu ultra-conserved element locus uce-5447,
            sequence.
ACCESSION   KCLA01000186
VERSION     KCLA01000186.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3036upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-5447"
BASE COUNT          295 a          196 c          175 g          209 t
ORIGIN      
        1 atgtcataaa caggcaagac cttgttacag tccttcggct aagcatggca actcatgctg
       61 tctggtttgg gatcacagtg catagaaacc aaatagaagg aatagggtgg cttttgacat
      121 aatggtcgat ccctttctta taatccaatg tatccaagac tttcgcaagc tctgtcatgc
      181 accaacacag caggaacaaa acctttccct ggtacaatgt ccattgccgg caatggatgc
      241 accaaaaccg tcaagaagct cagtgttatt gcacaatgta tgaagacctg gaattcttcc
      301 aaaagcttaa aataaaaata atggaatcat ccggacattt ctggacacct gcattaatac
      361 tgtatgacta atcaaagcac gtcagttgca cggactgaac cagcgatcaa catgcgccca
      421 gaatgcacac tagtaaaaat gcagtacaag gaagtagtct tcattgccta taggtcactt
      481 ccagtcaaag gttaaagttc aaagactgaa tgatcaaagt gctcattttc tcagtaggac
      541 tatcttctgc tacgagggtc acaaaatggt gccatcaaca tgtgtcatct ttaaaataaa
      601 agaagaacat ttatggaaaa catatcaaca ttccgagtcc cggtgagcaa ggcgctgcac
      661 acatagcaat tctcagacag cagcatgcag ggaaaataca gcaactgggg aagcctgcag
      721 cctcgataat gaatggctgc agaggaaaag ggagaccatc aaacacacac gcttcaacac
      781 acacacactc tctcaaacaa tgagggttag cagatattct attcaaagga gagtcatttt
      841 cacacttgat atttaggaaa tcctttcttc aggaa
//
LOCUS       KCLA01000187             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3052upu ultra-conserved element locus uce-4458,
            sequence.
ACCESSION   KCLA01000187
VERSION     KCLA01000187.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3052upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-4458"
BASE COUNT          146 a          133 c          147 g          148 t
ORIGIN      
        1 agccttcacc ctatgaagct cagagtcttc gtaaggtcta gatcccctgc aatccacagc
       61 ccggagtctt tgtatttctg gccaccatgg gctgggggta ctgggaggat gcacagcgag
      121 agaggagagc aggctggcat cagatgagaa gagggaggac tcattggtgt gcttgaccca
      181 tgcctgtaat ttgtaaagag catttttaca ccagatcaat gctttcctca gcattttaat
      241 gcaccccatt ggtgtcctta aactctaatg atgcagtctg tgagaagctg ccatttatta
      301 cccacagatg gggtgataat tattgacaag attgtaacta ataattaaac ccatttgctc
      361 ctttaaacaa gttggtgtga attatttgca gggagttctt cagcaggcct gtggtcactc
      421 ccgccgcctg gtgacactgc ccaggagtgg gacctctgcc agcgatgaag gaaagctgct
      481 tgtgaaagct gggctgttcc aactcacaga atggtagggg ctggaaggga tctctgaagc
      541 catccctaat atagttcaac cccaggatca ccta
//
LOCUS       KCLA01000188             960 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3068upu ultra-conserved element locus uce-1890,
            sequence.
ACCESSION   KCLA01000188
VERSION     KCLA01000188.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3068upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>960
                     /note="ultra-conserved element locus uce-1890"
BASE COUNT          309 a          177 c          172 g          302 t
ORIGIN      
        1 aaaaggatct gagttagaag tgtccctctg cttacaacaa agccctttca atctgcattt
       61 gaataaagat attgactata taaagcacaa ggctgcccaa ggcagaacat aaatagcgtt
      121 tcccaggtag agtgtttgat gtgggcttcc acataaggta ttgaaggcac acattggtaa
      181 atcctgagcc tgccagctct ttcctgtgca gtgtcactct ggtctagtta gagtgtattt
      241 agaaagtagc taaacacact tttgtgggaa ccattaaata acacagcgat tcatacattt
      301 gtagcagaca gcctctaata cacgttatta actgaaaata aaatctccac attcatctta
      361 tattttatct ttccagatgc ccagtatgac tgagaatata ataccccaaa gtttaagact
      421 ggtttgtaaa cacagtccct agcgtctact attgatcttt tgctatttta atgcattttt
      481 actgaccaac atgtcctgtg gtaaagaata ttgcctaaat tagttatctg attggttctt
      541 ttgattaatg atgggactgt gcttcattac acatgacaac atgatcagaa taatcactgc
      601 agccatagaa gttgggactg acatttttta ttccttcatt tttaaagttc atttataaaa
      661 ttatttaatg tatatgtcct aagttgtaat ttatttacat gacacttttt tcgatgggaa
      721 ctgttgtact gtgtcacaaa tggctaagaa aacaaggtaa actagatgta caaatcaatg
      781 tcttctggct caaggggaaa aaaacataat caagattcaa gagctgacct tgtccagagt
      841 ccaacttgtc acaaaacaaa cagtgaggtg cccaacaaat cactgggatc agcaggatgc
      901 attcaaagga atgtttaaat gatattattc cttgttgaag ttcttgccaa aacttcagga
//
LOCUS       KCLA01000189             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3083upu ultra-conserved element locus uce-67,
            sequence.
ACCESSION   KCLA01000189
VERSION     KCLA01000189.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3083upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-67"
BASE COUNT          209 a          140 c          138 g          188 t
ORIGIN      
        1 tcccacatga tacaggcact cagtcactac tgtactttgg ctagatcatg tcctcataca
       61 tgagtttcaa atccacattc tcatgatcag aaaggaactt gcttatactc ttaacattgt
      121 aaactacaaa gatgttaaaa tgtcgaggtt ttttttttaa atggaactta aacttgcaaa
      181 tctaacattt tttgagaaag ctcagattgt taaggaatca gcaggacaca tcaccaagct
      241 acaataggtt cactttcatg tggatgctgt agcaggcaag ccttcatgga aaaactctga
      301 atgtgaattt agctagtttt ggataaagac gcctttcagc gtcaataaac accatgaatg
      361 cagccacggt agagttacaa cttaatgaga tgaggggaag tgcacagggt caggcctcat
      421 ctcccggcct ctgtcatgct aatcagctgg gcagcctgca gctgaaaaac tgctggaatt
      481 tttatttgca tttcatttag ttggaaggaa attgacccag atggtccaca aaggcaaaag
      541 aaggctggca agcagtctag tgctgcacac ttttccaagg aactgcactt gtccgcccgt
      601 ccctcttgga gccgaaaaca taaaagatta aaacagcgta agggaattga tttcatgatt
      661 tttagataat ttccc
//
LOCUS       KCLA01000190             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3099upu ultra-conserved element locus uce-412,
            sequence.
ACCESSION   KCLA01000190
VERSION     KCLA01000190.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3099upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-412"
BASE COUNT          224 a          160 c          160 g          255 t
ORIGIN      
        1 tgtttttaac taaggggttg ctgataagca gcttcacgta aaggtttttt ttcacttccc
       61 tgcatcagtt actcgtttgt ttttgtgaaa caactttgca ggagctttag tggtgccttt
      121 gtttagtacc aattacaaaa gggatttcat gcaatggaga tgttttcatt taaaaacatg
      181 gagattacac atgcaaattc tttgctgaaa atgagggaaa gcagtaaggt atccttggtt
      241 aactttttag ttatttaaaa gtagcttgtt ggagattgaa tatttctatg tttcactaga
      301 gcttttaaat ataaaagaga tatgagacta tatctgacac catcaggcat attatattaa
      361 aatttatgaa caacttcatc aaaaaccact ttccttctcc tgcatagaga cagatttgtt
      421 ctgacataaa cgttacatgg ctggttgcag cctcagatta atgcgaagac cctggcgatt
      481 ccttttagac gttattttat gaaataatac ctgtcagctg ctgcctgatc ccagaaaagg
      541 gggcaggttt tccaggtcat cctgccatct gtcagctaaa gctcatctgt ccctccacat
      601 taccacctga tctgtgctaa caggcctcac agggagcccc gcttcattgg cccggtggga
      661 gcccagcaaa gagactgtgc gaggacatca cctgtgattc ccagatttaa ttatcactga
      721 agtgatgaag atgtgcacac agattgaaat gcttttgaat aaatgcatgg ctctggatag
      781 acatttttct ctcttcccc
//
LOCUS       KCLA01000191             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3115upu ultra-conserved element locus uce-3322,
            sequence.
ACCESSION   KCLA01000191
VERSION     KCLA01000191.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3115upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-3322"
BASE COUNT          225 a          170 c          157 g          246 t
ORIGIN      
        1 caggtctcat tgcattgaaa cggaatttct tgctgtgcac ctgccaacgt ttatacagcc
       61 aactctgtag ccctgttaca gatatgtgct gtggattctg cctgtgagag atctggtaca
      121 ctagcagctc tcaggaggag tggagagaag attgtaacta aaatccatca tgctttccaa
      181 tgtgactgaa agacggccaa accgaagctt tgctttctat tattgtaagg cttcgtttca
      241 taaaaacttt tgaagttaca tatatattga tgtatattgc taaaaataaa cagagacctt
      301 atgttatgtc tattgtgatt gcatacaaaa gctttgctgt gtgcttgggt gatcagtgaa
      361 gcttgaatct ccctctattt actgtatggt cactgtcagt tcaatgaact gcctccttgt
      421 tctccaccat tgtcccacac tcccttaaac atttgtcact gaagtgcctc caaagacaaa
      481 taaactgtca ccaagaattc aaacctggtt tctgggaata aaaagggacc tgaaattact
      541 ggattgtttt acattaaatg gtggaggttt ctttctcccc ctggaagaga ttggctggat
      601 aggaccttgg caaggagcct tttgaataac cagacaaatg agacaacttc cttccctgca
      661 gaaaatctcc ttttcctcgc ttaaagctgc ccttgctaca cccctcaata tttcaagaat
      721 gtctatttgt ctcaaaatca agcaaagaaa tatgaatttg atggacatca acatctgcac
      781 gggctttttt ggctggga
//
LOCUS       KCLA01000192             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3131upu ultra-conserved element locus uce-522,
            sequence.
ACCESSION   KCLA01000192
VERSION     KCLA01000192.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3131upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-522"
BASE COUNT          259 a          161 c          163 g          245 t
ORIGIN      
        1 gattttaaat agcactatag aacaaacaac agccacctta atttttgcag aggcaggtgg
       61 ataactggca gcagttgaga caaaccaagg ctgtgcctct tcaggtttgg cctcatggcc
      121 atccaaagtg tagctaccag agcccatttg tgcagctcct ctcctagaga agggttggga
      181 ctttgccctg gaagtacagg gcttctttcg cactgtctta acttacgtga tttctctctc
      241 tctctctttc tctgtctctt ccctgatttg gctgcttagg gacagacagg taatggagaa
      301 gaaattgaaa gggaaaatac agggaaaatg taaatgaaaa gaagttatta taactgttat
      361 aatgaagtgc ctttcattta aatataagaa tgtaacgctg aaatgaactt gtgatcctga
      421 aatgcatttt taatgagttt cctttttatt ttgctgcttc agtggcatat tttaaagacc
      481 ctttgaaaaa agccacatta aaaaacccac caaatgccac aacatgcaaa attggatatt
      541 ggtttattcc aaaactgctg atcaggaaga gtggctcttc aacacaaaat gttgcagtca
      601 ctttatttaa atgagtttga atttgcattg tgatgtgcca ttctgattta gaaaaaaaaa
      661 attagatttt cagatcaaat tgacccagcc agtgaagcat taagaaactg gcaggtttag
      721 tctgaaagcc tcatgttata tcaaacctgc agccggtgga agtcacacag cagcagtgag
      781 aaaacaactt tctcactgaa atctttctct tctcaccatg caaggtat
//
LOCUS       KCLA01000193             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3146upu ultra-conserved element locus uce-3697,
            sequence.
ACCESSION   KCLA01000193
VERSION     KCLA01000193.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3146upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-3697"
BASE COUNT          251 a          158 c          162 g          239 t
ORIGIN      
        1 tgcaacacca ttctacagct gagcaaagaa gggtaacatt cattagcttt cctaattatg
       61 gaagttttgc agctcagtgc ttaatattga acaaatagcc tgtttgggtc tgcacaatta
      121 ctgtctggat tgataaatgc ttctttaagt ggcaaagctt gcgtgagatg aacttttaaa
      181 tcacagcatt tccacacaat acagtgtgaa atttctttcc tttctttttt tgttaaatgg
      241 gtcacaaaga actggattta aaatatattg ctatcttatt tttaagtgga gtcagaatgg
      301 ctgtgccata gcctcatatt gccagcgttt ggtgccaaca ctttgatcca tacacatgaa
      361 ctggatatag acataagagc ttactaaaca aactggacag agtcccagtg ggaacactca
      421 aaaatgtatt aatcaaagtc aagcggcaga gcaaattgaa ccagttcatt aattatgaaa
      481 attctctcac aaagtgacat gttgttaact gtgtggatac ttaacacatt tgaatctgca
      541 gacttctctg catacatgca aaatgtagtt ctaaatggaa gttttcttct ttccttcagc
      601 ttctttgaag taaaaaagca gtctaatcac atgcacagag ctgtgctgag ctcacttact
      661 gcagaaaaga gcctttgcat gggtgggtgc atcagggaat caggagctgc tatggacaat
      721 aattttggga agcaaaccct tgaagggagg agcagacatc ccgactgctc tctctatgag
      781 taagcaccag tgatacacag atctcccagc
//
LOCUS       KCLA01000194             868 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3160upu ultra-conserved element locus uce-1824,
            sequence.
ACCESSION   KCLA01000194
VERSION     KCLA01000194.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3160upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>868
                     /note="ultra-conserved element locus uce-1824"
BASE COUNT          255 a          148 c          161 g          304 t
ORIGIN      
        1 tcaacatcaa cgtgatttgc ttacctcaga gcaatgtgaa taattttttt ttataaatac
       61 atctttcaaa tgcatgcagc ctatttgagg tttaaaatta tacatgaaat tgtgtaattg
      121 tactactata attaaaatgc taacatgaat cagtagctgc ccagctaaaa atttaattag
      181 gatgcctaga ataataaggg aagaaatatg ataagtagtt gtcaatatta aagcatgctg
      241 aaggaggaag gctgcaggcc ttgtagtatg tagaatgaaa cagcagattt cagtatccac
      301 aatcctttca atattaaatt ttcagtaaaa taaaattact tgtatatgaa aacatagcct
      361 ttccccagct ctcttttttt tcctgatcag ctgatgaaga gactagcagc tcgctgcttt
      421 gctggcttgt taattttatc cccactaact gtgatttccg atagccggcc tgctgatagt
      481 ggtaaggtaa atatcctttt tcattgccgt cttgaagatt cagtagaact acatcacagg
      541 catgtgtagg tgtgtaacac atcaaaagtc ggtgtgctcc atatttcaat gtacaactga
      601 gtgcttaagg agagagtgac attaactgtt gacagccttg catgctgtat ttattattag
      661 ctttttgagc ttccaagatg cagagaaatt tccttttctt agtctttgtt agctgcagtg
      721 gtttgtagtg tgtgtcctgc tttatccaaa tgaatattag tgattagtgt ggggttaatt
      781 tctttcctcc ttttttttct tactaactca tccgatctca agcttccttc ataatggttt
      841 tctgaatgct gtaaaagcat gatgtaaa
//
LOCUS       KCLA01000195             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3176upu ultra-conserved element locus uce-7328,
            sequence.
ACCESSION   KCLA01000195
VERSION     KCLA01000195.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3176upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-7328"
BASE COUNT          209 a          130 c          138 g          211 t
ORIGIN      
        1 ggacagtctc tcagctgatg ggtactgctt ccctttactt gggtaactaa tgacagcagt
       61 tcaggaggaa ggggggtgtt gggtagaagg aagttaatta atttcagggt ttttaatctc
      121 ttttcttttg taccaaacca taaaacaaaa attcttcggg agccagaaca tgtacctcca
      181 gtaatcaaaa gagaggcaag gatctgacta atagatatta cgttccatta tatggtcttg
      241 aagtcaataa acattaggtt accttcatgc agtgaaaaaa gaccagattt attaaaaaat
      301 cttatctgga gggtttgcat ttcaatagga tgtgaatttg catattttaa caataacctc
      361 ccatcattct gtctgatctg tgctcagttg gccatacaga tcactttatc ttgaatagat
      421 tatcaccggt ttaataaacc cttcataata tgcaggtata acaatggtac ttcattggat
      481 aaaggaggta ttaaagttct ttttctggaa ataggggtgg cccagctagt gattaacttt
      541 atacctctgt acatccctgt gctgaataca cgattgaagg agagtattcc cattattcac
      601 attcaaaacg gaccagctct tcagagctcc tattaactcc tcattgtcca tggcagctgt
      661 gcacatggag tcaacaaagc caaggctg
//
LOCUS       KCLA01000196             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3191upu ultra-conserved element locus uce-5412,
            sequence.
ACCESSION   KCLA01000196
VERSION     KCLA01000196.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3191upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-5412"
BASE COUNT          137 a          122 c          123 g          134 t
ORIGIN      
        1 aagagagaag tgctttaaac accccctttc catgggagac cgagttgttt ctgacgggga
       61 cagagagaag actgcttact gagacgatac cggcacgcgt gtaagccgga acggagcggc
      121 gagcccagcg gcatcgctac gtgccagtgc gcgttacacg ctgaactcgc tgctgcgtgc
      181 ggtattaact tgtagtgctt tactcacctc atccagcagc atcccaatta ggtcccatta
      241 ttacatcgaa ggctcctact caatagcagt taagcttctt tgactggatt ccctattgta
      301 taaaaagtat gccagtcttt gactgccaaa atcaattagt cacattcatt atgcctctat
      361 ttattaatgc tgtacacttt ataatgcagt tactgcgaac aaagaaagtt atgagatatc
      421 aaatatgtgc tatgattgta attagagcag gaggagtaac gagctctccg tcgctcaccg
      481 gttacgcagc tcctggacag gctgcgttag cgggga
//
LOCUS       KCLA01000197             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3206upu ultra-conserved element locus uce-5200,
            sequence.
ACCESSION   KCLA01000197
VERSION     KCLA01000197.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3206upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-5200"
BASE COUNT          304 a          186 c          177 g          271 t
ORIGIN      
        1 tttaactgag ctctctaaca atattgcaaa cattgaaaca aagcactgag gagcttagat
       61 ctgggtatca aacataagga ggacaactgc atgtttgtga tgatgagatg tacctaaata
      121 agagaaccca tcccagtcac cggtagccaa agtgctctag tattcataat ttcctaataa
      181 ctgaattaga acgctaatga agtgttcttg gctgttttcc acctgcagta tttcattaca
      241 tatatgtgta tgtagcattc atttaacaga tatttataca gaactaataa aaaaattaaa
      301 tacatttgca tttttattat cactcctttt aaaaaagtta ttaagagtgc ttagaaaaac
      361 atattgctct atggattcct atttgcagac tttgcataaa ggtgtaaata aaagcaacta
      421 ataagctacc cagacaccct tctgagcaag tggctaaaag ccaatcaata ttatgagtta
      481 atcctccctg gatgctcatt caattaaagg tgtcagtaat gcctcatctg atgtggcctc
      541 aattaaatcc agctatctga tggtggaaaa cacaagggga tacagcaaca gcagcagaag
      601 cagacaaata ggcaggcggc atgtgactgc taattactac acccggggta tattacagct
      661 tgggcacctc acaccgtgcg tggcagctct ctgtttggct gtactcatgc agacaaggca
      721 cgtgctgact gtatttcagc tccaggaata tgagttttaa aagcacttgt tctggtgcta
      781 tgattatgtc atttattaac aaccacaaaa ctgggcagag caagtgcaga actaaaagtt
      841 ttccctgtgt gtgcctcggc cctaacaaat cacaggagtt ggaaacagtt aacatcatag
      901 aatttaattc cttcagtttc acactgtgtc tttactaa
//
LOCUS       KCLA01000198             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3222upu ultra-conserved element locus uce-6035,
            sequence.
ACCESSION   KCLA01000198
VERSION     KCLA01000198.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3222upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-6035"
BASE COUNT          103 a           94 c           91 g          157 t
ORIGIN      
        1 ggcactaggg aggggtgggc aggctggctg taggctgctg cagggtaatc acgcgtctcc
       61 ctctcactgc tgatttgcaa gagcagatta atcagagcgc gtggcttgat gaaatttgct
      121 gttattgtgc ccatttttag caacatcttt tattatcttc attattcatt tacaggggac
      181 cggcatcaat tatgcaaatg agttcacaga ctttgcagat tacttcattt gccgctattg
      241 tttgtggaaa tttaattatt aaatattatt aagcttgcgt tttcttcaat tttccgaggc
      301 ttagtttcat ttgatttttc ctccagctgc tctcgttccc tttcagtgcc aaaacggctc
      361 ctcatcaaag ctgctctggc atgtgaagac caaataaaat ctcctcaatt taataatttt
      421 gatgttagtc ccttgttctc agctg
//
LOCUS       KCLA01000199             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3238upu ultra-conserved element locus uce-813,
            sequence.
ACCESSION   KCLA01000199
VERSION     KCLA01000199.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3238upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-813"
BASE COUNT           98 a           59 c           71 g          112 t
ORIGIN      
        1 tcttcaggta cgactcccct tggacatgga gggcatattt tctccttgag ttaggacagc
       61 ttatgacaaa taatgatgag gaatcaatag acaggaggga aatattgggt gagaggctga
      121 atgaatctca gagataaatt attgaccacg ggcatggccc tctctccttt ctcttatatg
      181 ttcgtattcc atctcactaa caacctgaaa gaaaatcaaa tattttgttt gggggcttca
      241 ctaatatcag caacttttac tatcttaatg gcatttttat tgatcccagc tttaatggga
      301 gctgtatata tttgatgttg gtcatttaaa gtagatgtga
//
LOCUS       KCLA01000200             291 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3253upu ultra-conserved element locus uce-4479,
            sequence.
ACCESSION   KCLA01000200
VERSION     KCLA01000200.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 291)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 291)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..291
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3253upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>291
                     /note="ultra-conserved element locus uce-4479"
BASE COUNT          102 a           43 c           52 g           94 t
ORIGIN      
        1 aggacaacat tactggagaa atgggtgaac tttcaaagtg aaaaagaatc ttgtaaatgt
       61 aattcacaca ccaggaatga aaatgtcatt gcttcacttg gagggttaac cactttctaa
      121 tttagactgg caaattttat aatgacattg tgaaattagc agcattttat tgtattaatt
      181 atctgcagga cactacacca ttacttctaa taaatgtaaa ttagattgtg cctcctagca
      241 caatatagaa gcaaggtgaa tttttattgg ctatttactg gatttgagac a
//
LOCUS       KCLA01000201             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3269upu ultra-conserved element locus uce-5314,
            sequence.
ACCESSION   KCLA01000201
VERSION     KCLA01000201.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3269upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-5314"
BASE COUNT          279 a          165 c          137 g          275 t
ORIGIN      
        1 taatgaggag aagagaactt ttcccataat ttgattcaga ataatttatc tttaggaaag
       61 ctgagatgtt attaacagtg gcttttaaat tccagtatgg aaaacagtgc ctatcttgca
      121 tcacagtttg aaatcaccgg tcacttgtat aagtttgcat tgctgcaagt ctgtacttca
      181 agctttgcag tatatgctta tacatgcatt cacccttcag tagttaatgt tgggctccat
      241 tttaaaccct tcacacatgt aactccatcg atggattgca ttgattacaa acgcatgcag
      301 aaaaatgcta ttaaaaaacc cccaaattat ttgtagctaa ctgtttttca gtacctttcc
      361 ctcaaactgc tgaataaaat cagaactacc aacagtaggt ttacctggat agatggcttg
      421 tttaagtgac ccagatttga agttgtttgt cttggttcat gtcccaagac catcatatta
      481 gcattgatca atctgaaggc atcgataaca acctgtaaaa acaagatgtc aagtcaattc
      541 tttttagaaa acgcaactaa tagtgccaag aaacagtgga caaggcacaa tcaactctca
      601 tctgtttttg gcctttatcc agaaaatcat ttaattgtaa tattaacaaa aaggagcttc
      661 ctgctggcta tgctatcagc acagtacaat aacttgtgtt gtaaggtgac accaattatt
      721 accttttcca tggagcttta cattttatgc atataataaa atcatagaac actgcatttt
      781 tatgtacact tactctaagc ttcaaaggta tgcatatgtt tgtcacctaa atcttatcca
      841 atcaaaatga atgaca
//
LOCUS       KCLA01000202             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3285upu ultra-conserved element locus uce-4477,
            sequence.
ACCESSION   KCLA01000202
VERSION     KCLA01000202.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3285upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-4477"
BASE COUNT          216 a          171 c          188 g          191 t
ORIGIN      
        1 gatgcaaact gatgctgcca aagggattgt aaactcattg tctattgtgt cctgtttcac
       61 aaggaacaga ggggctgagc atgcacctga gactcagctg agtgaggttt agactgttgg
      121 acatgtggat tatttgacga aagcacccaa taccccttac ttggttgcct tcattgttgc
      181 ctttcacctc cgtactgact ctgctctcaa gagagtgtct ctagcagaga gggaatcggg
      241 ggcgccaatg aagcggagat gtgcttaatg tagacaccat taataaatca ctgatagtta
      301 agatatagat tgggtgatgg gtggcagatg ggaaggagga atgtcaaatt gcttttctca
      361 tatagattat tggattaaca aggaagcagc gggcatgtgg caaaccggtg taacaaattg
      421 ctatcataaa aaaaaaatgg agctcattgc agcctggtaa taatgccatg tcggccatta
      481 gctctctgga gaggtactta gagcgcaaca tccgtcttct ggaaaagaga cggccactgg
      541 aacaccagag tgaaggaggc tcccatttac ctctccttct ccctccccct gcctctgact
      601 ccagagctcc tgctgctgaa gcacagtggc caacagcggc tgtaatgaat aatcaccata
      661 gcttttaata agcactgaaa atgattcccc ccaactctaa ccatgagtct gtgctcccct
      721 gaatcagtac agacaacagt ggtgtgagat cggtaggcag acaata
//
LOCUS       KCLA01000203            1080 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3301upu ultra-conserved element locus uce-5925,
            sequence.
ACCESSION   KCLA01000203
VERSION     KCLA01000203.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1080)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1080)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1080
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3301upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1080
                     /note="ultra-conserved element locus uce-5925"
BASE COUNT          312 a          256 c          241 g          271 t
ORIGIN      
        1 gacttggctt ggcctaactg gggctatcac tgtaattgtg gaaggaagtg agaacatact
       61 agcagagccc ctgggagtaa agagcaaagt gaggggaaca gagactgtat tggtgggact
      121 ctgaagctga agaagtgtca gagagcaaca cagcgatgcc tgagggtgga gctgagctga
      181 ggcagttaga tcctcctgga acagcaagca gcataggatc tgagctggaa gcagagctgg
      241 cacactcttg gcttccctca gtagctaaca ccatagatga ctaggtaact gggcacatcc
      301 tctatacatt taaagcaaga gctatcactg ttaaaagctg cagggatgat aaatatcttt
      361 atgctttcag agaggcaatg gggaactctt cccatcaccc gtttgtcgct ggcccctgtg
      421 gtgcacaggc agcctctctt ctgcctgtcc attcctccac atccagtgca ttattatgaa
      481 ccctccagca cacacagcta attagggaaa atatcctttc tagcaattta aatgattttg
      541 gcattttcag gagggcacat gtaatattca aattacttcc actctgcgct gccttgtctt
      601 gcctggctca tcttcccagg tgaatttgta gtctctgaaa tgctctaatt tcccacacaa
      661 gccatgtcaa atataatttt ggtgcaaagt tggtaattat acgtaacatc agtctgatgt
      721 taaaaacact gaaaaattta gcaagaagag acgaatggag agacacaagt ctgagaccaa
      781 cgaacgaaag gcgtgcagcc cccttagtat ttgtgctcgt taattaataa tagcatgttt
      841 tcaggaactg aaaggatgtg tttcctgaac tgactggaat tcacttatgt cccaattaca
      901 ttgtctcagc aaagaacttc ggtcaagcct cgctgaagag ccacagctaa accaaaagca
      961 aaatccagac tccccactgg agtccatcac agtcacaagg gtgtgtaaag gagcacaaat
     1021 ctcacccttg ggttcaaacc caattgtctc ctcctctgcc accctctgct gcaaacccct
//
LOCUS       KCLA01000204             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3317upu ultra-conserved element locus uce-3290,
            sequence.
ACCESSION   KCLA01000204
VERSION     KCLA01000204.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3317upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-3290"
BASE COUNT          180 a          235 c          240 g          187 t
ORIGIN      
        1 ctctggagtt taagagtgag gaggaatttt aaatgcattg acccctgacc tagccctgcc
       61 tgtgagggga agccagacct tgggctgccc ccagacagat ggggccaggg gggctgcagg
      121 ggatagtgag acctcaaagc ctgaggtggg agcagggaag catcctgctt cacctctgca
      181 ccctgtctgc ctgctgcctc agtgagcacc gacaaagggt gccccaaaac ctgctgatgc
      241 cacagctgct caacactgag tgggctctgt gggagcagga tgcccccacc atgccctctc
      301 ctatccttta tcctgcccgg ttcctggcat ctccgcctcc tgcattgagg gactgtggtg
      361 atggcagtgt aattaaaaac gcaattaagc gctgccactt agcagaaaag tcatacagtt
      421 tggggataat tatctgacaa tataacaagt tgcccaacat taatcaggtg ctgatctgct
      481 ccagcagctg cgctctccac tccggccgct cccttcatgg catccttcag caggcaccaa
      541 taaatcagac ccttatgggg gctgtgaggg catcatgctg tcccctgcct gcctttgggg
      601 gcttgggggt gcaacagcag caccctcctt acccagcccc agaatgtttt ctgcctgcct
      661 gtgggtgcca atagatagtt ggagcgttgt ggctgatctc agggcatcag gcctcacccc
      721 aagttgtggg gctggggagc acccctgaaa ggaaatcttc tggggaattg ccaggctgag
      781 ggaaaacccg atgccctgtc ctctacaagg atgaggttgg caagggtcct tgggatgctg
      841 ag
//
LOCUS       KCLA01000205             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3333upu ultra-conserved element locus uce-4014,
            sequence.
ACCESSION   KCLA01000205
VERSION     KCLA01000205.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3333upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-4014"
BASE COUNT          263 a          161 c          183 g          270 t
ORIGIN      
        1 tgcagaaaag cacaggcaaa taaaaggttt caaaatgacc agtacatgat gtgaggtcag
       61 cccgggggac ctgcctattg tgatggcatc cagaagagca gaagtggaca gaaaggctgg
      121 tctgaagatg gagtactcac ctttttgggg agcacatgca cacactgccc ctctgccact
      181 ggtactgtaa tggttaatgg taaaacttgc cttggctgag atccttctgc tgtttgatgg
      241 ctcaactgaa gcttgatgtt tatggtggaa attgtcttga tttctttaga tgagatgagc
      301 atccatggag tttgaaaatg tgttttaatt aagattctgc taaattctac cagacaccta
      361 cttggaaaac aaagcaactg aataattaac tctgatgaga gcagatgctg ctctaatgac
      421 aacctgttac tgctcaagtg catcattagt tgttttactg tgttctttta atatgtccag
      481 agatcctcag ctaatgaata tattggtagc aatgcatcta aaataatttt tcaatgtgga
      541 ctattgtaaa aaaaatagct aacaacaacc aaataaaccc ccaatcctac tcaactgaaa
      601 tagtgtttcc actgatctgc gttgtgtgtg cttgaaagca aactgttctt tagttatcct
      661 tgtgggatta ttttagccat acatcaagtg aagcttccaa attgatgaga atctaatgat
      721 gcatttattt acagatgtgc agttctgttc cctgttatgt tgccgaaggg tgagaaaaga
      781 aaaggctttt tcttacctcc atgtaacgcg cattgttgtg cattcgacaa agtgaataga
      841 aaaatgccac cagcatgatt ttatcctgtt atttcta
//
LOCUS       KCLA01000206            1094 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3349upu ultra-conserved element locus uce-4672,
            sequence.
ACCESSION   KCLA01000206
VERSION     KCLA01000206.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3349upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1094
                     /note="ultra-conserved element locus uce-4672"
BASE COUNT          301 a          220 c          259 g          314 t
ORIGIN      
        1 aagtgaacag atccttcaaa aagtggggga ataaagaaag gggaggggga aagttcaatc
       61 agggccagtg gcaagaagga gtccgtgctt atgaatttgc aaacccctgg aaataactgc
      121 cagtcaattt ctgggcgaaa tgattgagta cataggagtt tatgaaaggt tgagctttgc
      181 ccagcatttg ctcttacagc tcattcatgt aaatcctaca gacgagtaat acagcagatt
      241 tcaaccttac tgaaatataa gactgtcttt tggcttccat atgactcaca gtttcatttt
      301 gaagttcctc agcttctctt aaggttatgg agtggtcaag cgaagcggaa cagggttttt
      361 gaaatcagga agcctgggtg ctgcttcatt cagaaaaaaa aggagagaga gagagagaga
      421 gagaggcagg agaaaaagcc ctattcctgt gtttgattga aaaataaaac tgctgctctc
      481 agtgaacctt tgaagtcccc cagcccagta attgtttcac gacatttgca gcttgaggca
      541 gcaagaacgc ttgtggttgt tttaaaggca tctgagtgtg gattccatat ggtttatttt
      601 tgttttgtgt tttttttcct ttccccttcc ccactcggag cctcaagtcc ttgcgcgttg
      661 cccgataccc gctcccagcc tactgaactg tctgtgaaag cgctgagtga ctgctttgtg
      721 gcccaaagat tcaagcgtgc ttaattcagg caaaaccttt gaatgcctgt tgaggcaata
      781 gttgatttta gccgtgcttt atcgatacta tatttggcgt gtggcttact aagcagcgta
      841 cagtttgctt tcccgaacaa aagacctctt catatggcct atacttagag catgatactc
      901 caagtgctta ctacagagca tagtgctggc tgtcatgctt tcaataggta gtttgcagta
      961 agcctgatag taagccattg gagtcaaata aagggcctga ttcaccactg tgttcctctg
     1021 gtcttggagc agtgaaactg ttttgttcag cggaacaagc tgaatcagat ccaaaaattc
     1081 tgaaaatatg cact
//
LOCUS       KCLA01000207            1117 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3365upu ultra-conserved element locus uce-2069,
            sequence.
ACCESSION   KCLA01000207
VERSION     KCLA01000207.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3365upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1117
                     /note="ultra-conserved element locus uce-2069"
BASE COUNT          377 a          239 c          235 g          266 t
ORIGIN      
        1 tttccaactt ttcaaagtta attcagcatt agaagcacct tactctattt ctgattaaga
       61 gtagcaaaac caactgaaag caaaggaaaa catcagaatt caaacttagc taaagccttt
      121 cccggcataa atctgccttc ctgttaggtc tgcagccgcc tacctgcgct agctcgggta
      181 attgttggag tctacattgc gtttcaacaa atgctgtaac gtgtcagcgt agagctacta
      241 ctacaggcat ttggattatc agagcaggac acacaaaata cacgtaacga ccaaaaactt
      301 tcgtttcttt agcagcaaag gtgatgtcac tatttcgtga aatgcaagtc tacatgagat
      361 gggtaaatca tgcaaagcaa agcaacagca gaaaaaaaaa attaaagcaa gtaaaagctc
      421 ttactgtgca acaagctcgc caaagttttc atcagggcag tattttcgag gacggcctcg
      481 ttgaatatga cggccacgtt taaactcttc atcatcaaca gtccaaaagg acccaaactc
      541 atcctctact ctgataaagc acttatgcag tgagaggttg gtgcgaatgg caccctggga
      601 caagagcagc agcaaaggag atgaagtgga aacaaaggga cacgggatcg gggacagaac
      661 agacatcaaa tacagggaaa aggaaaaaga aaataaaatg caataagcat aagcaaatgg
      721 tttgtgaggg ttaatatgca ttgccaccta aaagctacta gcatgtgatg caacaaacac
      781 caagcaagca gggtcagggt actggtgggc atacaaacag tagtgatgag atgtttgtct
      841 tggtttccct taactgaaac aatgcgaaac cacctgtggt tggtctaaca ccagctagca
      901 gccaaaagcc tctacgttaa actgtaagca tgatccaagc taggctaaga agttcaaaca
      961 tggtggacat acccactgat cttttgtggc cttcgttttt ggaactctag ttcatccact
     1021 gtccatactg cccctttaac gttttctact cgcacaaaac acttgtgaag actaagatta
     1081 tgacgcactg cattctgcag caagtataaa agagaaa
//
LOCUS       KCLA01000208             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3380upu ultra-conserved element locus uce-7615,
            sequence.
ACCESSION   KCLA01000208
VERSION     KCLA01000208.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3380upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-7615"
BASE COUNT          201 a          150 c          123 g          185 t
ORIGIN      
        1 tgatgataat tcagacccag ctcacacacc tttttgatat ttctgcaagc aatccagagg
       61 cgacaggaac aaattgatgg agacagaagc aggagaatcc caccctgtca gaagatgaat
      121 gagctgagct tgcatgatgt gaaccatggc tgacagaagc gagggggaat caaagagtga
      181 gcaacttttg acaacacacg cttcacagct ctgaccactg aggatctaca tgattatctc
      241 cagacaaaat aactgcgagt aaaaggctta catacactta aattaaacac agcggggttt
      301 tagtaatctc tgtttgcatt ttactttctg ttaagaagga aattgcttgg acttggaaca
      361 tttcatttaa tggcattttt agttaccttt tgtacttcca atgccacagt ctccaaatta
      421 cccgggaagg cacaagaaac ttttgtcctt tctttttaat tgctgcagct tccttcccaa
      481 ttttactaaa ttaaagctgt tttaaaacat ccctgcattt caaacctcat tatcccaatc
      541 tcaggatgaa gaagagctac caatacaacc cccgtttctc tcattccttt tgcaaaggag
      601 aataaacgga atgcagttgc cgtcatgata gacacatttg ccagtccacc ccgcgttgt
//
LOCUS       KCLA01000209            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3395upu ultra-conserved element locus uce-6250,
            sequence.
ACCESSION   KCLA01000209
VERSION     KCLA01000209.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3395upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-6250"
BASE COUNT          307 a          176 c          169 g          374 t
ORIGIN      
        1 taatagtgtt atgtcagggt gacagtcctt tccattggaa atcaatggac ttgcaggatt
       61 atcagtgttc atcagtacag attaaacctt ctgtatcttt atcacttttc ttgaaatacc
      121 taaggtttta attattcatt ttgtctaata tttgaagatg gttcaggata aatgtaatta
      181 aaaggcataa actgaacagt gcagtggaag attctgtagg gatctttctg atacctttct
      241 tcttcccttg atatttaaag gagttatcct gctgaagtta ttttgtcagt tttctgtcag
      301 gctgtctttc ccacagtttg cagctcattg ctgcactctc tgataatctt actacactga
      361 ctggctgcag ttattaccct ttatatgaag gatctatgtt gaaagccagt tatgagtttc
      421 tgtcccagtg gattgcatga taaagttgaa gcagcctgtc atccaaagct gtataatagc
      481 ttcagctggg aaatacaaaa gtgccatgga ttattgatag agtcatatct gcagttctgc
      541 tgacaaattt gatgcctctt ttgctaggtt tccgttatta agaaatacct ttgttagtgt
      601 gtctcccctt ctctccttct gtgtagaatt tggcttggct tatgatttca tattgtatca
      661 tatatttcat ttaaaaatga tgttatactt aataacctta atgttacaag gaaaaatgat
      721 gaacttaaca aagtgctaat gatcttcatt taaaaaaaat accctagaag tacaaattta
      781 atagaccatt ctaaaattat ctttctttta ctttttctct tcctttcaaa gtacttcaaa
      841 aagcattaac atgcatcatt tttccttaac ttgaatatct gtaatagaaa gcaaaagaca
      901 gagaaataaa gattattaca gcagttctta aaagtttaac tgacttgctg gtaaaatgag
      961 tcattcactt attcatcaga attgtatgca caggctaaga aaagtctttt gccctcttca
     1021 tgtcat
//
LOCUS       KCLA01000210             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3410upu ultra-conserved element locus uce-6905,
            sequence.
ACCESSION   KCLA01000210
VERSION     KCLA01000210.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3410upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-6905"
BASE COUNT          247 a          179 c          192 g          242 t
ORIGIN      
        1 ggactcctga tggcacaagt tggggtattt ctactgagtg ctaacagtct tctggcatcc
       61 cagtgctgtg tgatgcctca tgtcctacca acttgagctc aggacctcat gctagaaaat
      121 tcattacttg ttgctttgag cagaacaaac aggatatgta aaaccacttt gcaatgttca
      181 gggagcatca ggcgtgagca cagatggaag gcctgtggca agtgtcccct gcttgtgctt
      241 cgaggtaacc tcgccggcgt tgcctccttg caaatgccat acagtgtttt tcactctctg
      301 ctggaagaaa aagctgccct aagaaaagca gaatgagggc tgatgttttg aaaggtgtcc
      361 aagagtaaca aaactcaact ctccagggct gagtttcgcc tcttgtgttt ctcaaccagg
      421 gtggctgaat gtgttacaga cctattagaa attttgctac aaacgcacaa atattaatct
      481 acagccattt cctttgcttt tttaaacatg aatgaggatt tttgtctctt tctccctcca
      541 taaattgttc atggtcagag ggggcatgtt ccgtgtcaaa gtcttgaccg ccaggatcaa
      601 acaaaaaacc cttgtgaact cgaaagtgga gacaaataaa tgactattac ttttttcccc
      661 ccttttgcct ggagttaaac cttttctctg tcaacaatat tgactttgtt cacttggaag
      721 gaaacgagag agagagggag atttctctag atgctgcaca gaaaaaaaca ttttggaagg
      781 aggaatgaaa aaagacagag gttacaggaa atggtagaca ttttttgttg aattaaacca
      841 ttaggagtga cccaaaaacc
//
LOCUS       KCLA01000211             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3439upu ultra-conserved element locus uce-3316,
            sequence.
ACCESSION   KCLA01000211
VERSION     KCLA01000211.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3439upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3316"
BASE COUNT          105 a          144 c          136 g          122 t
ORIGIN      
        1 catccagccc agccaccgct ccacactcgg gacaggagcc ctcatcaccc cggcccggcc
       61 ccagcgctgg gacagccggc acctccaggg tgaaggagga agggaaaagc ctggaggatg
      121 gaccttccag ggaaacacag gctggtggca gcgcggcctt attttagccc ggagtgtggt
      181 tttggtttag cagttcgagc agcatcctgt aatcatttac agcccctgga atgtaggggt
      241 gaaataggag agatttatct gttcggagtt gtgatatgta gacaatgggt gttcctaatg
      301 aggaacatct gcttttgtgt tttcccagaa aacattattc cactatgaaa atgatactcc
      361 catccctctc agccacgccg ctaacaaaat acgggccttt tcccctcttt tatttgctct
      421 gctccgggtc acccgcattt cccagggacg ctttcgccgt cgcatcgtcc cgctggccgc
      481 gccgcgattt acgggggggt tgttctt
//
LOCUS       KCLA01000212            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3454upu ultra-conserved element locus uce-2288,
            sequence.
ACCESSION   KCLA01000212
VERSION     KCLA01000212.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3454upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-2288"
BASE COUNT          186 a          322 c          210 g          337 t
ORIGIN      
        1 ggggaaatgg agaaatgttg tgaattgcca gcagcagagc cagaaataga acccagatgt
       61 cctggtcttg tgtcaaatat acccagtctc tccaggaggg caatgagcag gctgcagtgc
      121 agggggatct tctagtaaga agcaaagccc caatgagcag ggcaaatcca ctcagctcac
      181 caatggattg tgaaaccctg gaactcttgt ctgtccacac agccctgtac ggtgttgaga
      241 ggaggcagag cagtccagcg ggtccctgcc agctttgtct gtgtccccac gctgtgacgt
      301 gaggctctgt tgcagagcag gcaggtcagc tcacgtgtgc cttttccacc tcactgcgtg
      361 tactgcacag gtcagctcgc ctgtggttta gcatggctgt gggaagctgc cggctcccgt
      421 gtttagctgc cttcaggcct agctaagccc aggcactgtc tggctcccca gccacaatct
      481 ctcgttagaa agaaattaaa agccactcaa ttttggctaa tatccctctg taggccttta
      541 actccacctg tgactaaccc attcataata gctctggttt agtggcttgg gttgatgtat
      601 cctcgattaa tttgggagga gagtggcagg gccatatctc tttgtcttcc cctctcttac
      661 tccctgtcct gcagtctgtc ttcttccact atttcatctt tgttataatt tctccattca
      721 ttcatcctct tctcccaatc agctgccatt tgctcttcac ctcacttttt ggtgttttct
      781 tctccaactc ctgtttgtct acttcccctt ttgttctcct catgtccttt aaccttcctc
      841 ctcttttttc ttctctggca tctcttgctt ttctcttttc agctttccct tcctttctca
      901 tacctttcct cactcatttg gcccccttgc tctgacactc tccccctgtg cctctcctct
      961 agctctcctc ttgcttcctc ttgctctttc cccaggtttc agatgctcac atgatttctc
     1021 tccctctttg tttcaggccc ccccaccctg cttcc
//
LOCUS       KCLA01000213             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3469upu ultra-conserved element locus uce-1928,
            sequence.
ACCESSION   KCLA01000213
VERSION     KCLA01000213.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3469upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-1928"
BASE COUNT          101 a           54 c           61 g           77 t
ORIGIN      
        1 ttaactaata aatggctgat tcaacagaca ggcagcaaac acatgttttg ctagagatga
       61 ctttttaagt cagcatacat caaacagaca gtgccaatgt ttgagaataa gccagtgatg
      121 gtgtgttttg ctctttgaac tgtcttggag atccacagac taaaacgtgc ctgaatgttc
      181 tcctgaatcc actgggagaa cttaaagctt caaagaggaa cactatcaca tccaaaggga
      241 aatgcatcga ttgaaggaaa cgtgtgaaac agtctttaat aattaccaga atg
//
LOCUS       KCLA01000214             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3484upu ultra-conserved element locus uce-1202,
            sequence.
ACCESSION   KCLA01000214
VERSION     KCLA01000214.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3484upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-1202"
BASE COUNT          297 a          172 c          183 g          341 t
ORIGIN      
        1 tgacatagtc ttcccttgac catctaacta atggtttatg ggaatctaca taacttgtgg
       61 tgtatttctt ctgaattttc tgtcacgtgg cttacgtttt gtgaagagag gggggctgtt
      121 gacgtaattt tagcagagca ttcaagcttt ttttataaac aaagtaaatt tccattatag
      181 ctgaaagata agacatttca gctttactcc atcgttggaa gttggatctg aatatttcat
      241 tattgatgta actccagaga tacatgttaa gccttttgtt taaagtacat ttagaattaa
      301 gcaggccata ttcaaagtaa attatctaaa tagattttgg aaagagaaag gagtctgttc
      361 attttaatat accttcagaa atattttact tcttgatgat gacagcagct cttactgaca
      421 actattaata cattataaac accccatcag agttatataa aaacatgtca gttttaaaga
      481 gaacatcttt gacagcaaat tttctgattg tgaaacagct gtgcctccag tacaatgcat
      541 taagtagttt attcctttta gatagttaaa ttgtgcatga aatgttgctg gcgcaagggc
      601 tccaaatctg gcctgattag cgaacatctg ttacattgga aaaattcatg tctaccctaa
      661 ttagctgtca ggctgatgta catcagccct gatggtgagg gatcctgtgc tgtttaagtc
      721 aaacaggttt ctctcctatc ccatcacctg ccctttcaga tttcttcctc tggtgtgttg
      781 ctgtaattag agattgttgg aaatacaatg gagcaggtta tggtcagtta tagtcccatc
      841 tgtgcaattt ttttattccc acaaaactta caaactgata taaagcagtg ctagcagtcg
      901 gactaaggtc tttttctaat ctagactcta atcggaatac ttttcattat gctaaagcca
      961 agactttgtg gtgattcaaa gaaaattgat aat
//
LOCUS       KCLA01000215             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3500upu ultra-conserved element locus uce-227,
            sequence.
ACCESSION   KCLA01000215
VERSION     KCLA01000215.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3500upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-227"
BASE COUNT          237 a          189 c          170 g          247 t
ORIGIN      
        1 caccagcacc tacttctgtt gtgattccca aactcttgtg gccaaaggtg agatataagc
       61 tctgctacca ggtattttaa acaaagatat ggggaaagtg tttgctgctc tctgcaaggg
      121 agaatgaaat tgtagattac tttagctggc acaggtcgaa tgcctccttc tgccagggca
      181 accaagcgat cacccacacc aaaaagggaa tactgatccc ttgaagttag aagctacagt
      241 tctcttcttc agcaaattgt acattttctg tgcatgcgtg gccccgcacg tgcacacgtg
      301 catgtttaaa gctggagagt gaccatacag atacttattc tctacaccac ttcccttttg
      361 aaacattaaa ctgacactgg aactgactgc acaagattgc attttctctt cctaaacaac
      421 ttgaattgaa aggttactta gtgtaacaat atttacttgc agaattgtgt tgttaccaag
      481 ggtataatgg atggtggcta tgcaggttta cgcaagaatg agtgaagcat gaggcattag
      541 ccatgtgttt gacatgtttc aaattgctat aatccagcat taaacacacc cagcaattca
      601 tgccgtttct tgcagccata atcttgaata aagcgtgcgc aaccacttat tatataaatt
      661 agtatatgac tccctgttat agtcacaaca gtgcttttgt gtttattttg catcaagacg
      721 tggtctttta tttgtacaaa tagtaggata gcgcaccacg gctcaatgag tcctcttgat
      781 gttacaaagg ggcgcaacaa gcacctggct ctcatcccac cctgccctgt acaggttctc
      841 ctg
//
LOCUS       KCLA01000216             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3515upu ultra-conserved element locus uce-251,
            sequence.
ACCESSION   KCLA01000216
VERSION     KCLA01000216.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3515upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-251"
BASE COUNT          246 a          218 c          259 g          270 t
ORIGIN      
        1 atgcattaag taggagcatt taaatatagt gaaactaatt ttatgatgat tagttgaagg
       61 aaaacattgc gttcctatca tctatatagg agccaatttg catgaaaata cccaaagttg
      121 ctatgccaac attttccgtg ttgtcggtcg gggtcgtctc cgtgtcaaga ctttgtatta
      181 aaaatcggtc tccagtgccc gtgtctttta attcattgca agctgtaggc catttgctca
      241 caaaacgctt gcagtaaaac aaatgaatag ctaaaatact catttgcatg attcccattt
      301 gaaaacgatt cccctggaat taaggaagcg tgttgctcgg tgccgaagat ggatgggcag
      361 atgagccatg caattaatat ctcgcgacgt tctcttttaa agccctccca agactaaaag
      421 caacacatgc tgccttccag acaaattggg tcccgcaaca gttccagggc tgccatggca
      481 gcagcttgtt cccgctctct cccctttatt gtctcgctta cattatgcag taattaaaac
      541 tatttaccat tcctacttat ctgccatctg ctgccgttga agtttcctct tctttatgaa
      601 gccatcttca gcagcaaccg ggaaaggaac ggagtcaagg acaagcagag cgagggagag
      661 agttctcctg ctttttatta atcggtagcg gaccaggacg agggttgagg gatggaaagc
      721 tggtgcttct gtcaagtctg tcgtgttcta cagttagccg gagccggctg ggcgcgcggt
      781 aaggagacta ggtgtaccag atgtacatgg ggttgcaggc accccgtaac cgccggggtg
      841 agtgggaagg agggttgtag tggcggtttc attcactcct cagcccgtgg cggggagtga
      901 atgaaaggct ttggtttgaa tgaggctggc tcggcagcgc ggatgggttt tgcagcccct
      961 tgaatgggag ctcgtttgtg ccagatggaa tcc
//
LOCUS       KCLA01000217             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3529upu ultra-conserved element locus uce-7022,
            sequence.
ACCESSION   KCLA01000217
VERSION     KCLA01000217.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3529upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-7022"
BASE COUNT          216 a          120 c          106 g          222 t
ORIGIN      
        1 atctgaaaag aaccatatca gatgggatct ttgcaaagca caactgcaca tttctttact
       61 ctggtaaaga atctacttgc agtccttaat tgaaaaaggt tggattattg tttttcattt
      121 aaagctttca tcagctttaa aaattgatag tgcctatatt cacaagggat taaggaagaa
      181 aataagtata caatttcaca gcctttaaat cacataattt gccactgaaa ttaacatgta
      241 tcatcttgaa ttattatttg atcttataca taagtgctct gctatttaag aagagtctta
      301 ataacatacc taccaaaggc agttcaaagc tcttttatca ttttttttca ttagtatctc
      361 ccattttcat ttcactcctt ttgttcctta ccaccttctt catccagaaa aataagtaac
      421 agacagtgtt gcttttgaaa tggaaaaatg gtttcaaatc actggcaaag cttaatgact
      481 tctgactgct gagatatgtt aatttaagcc agaccaaatg ttcctcagct gcaaatattt
      541 ggtggtgttc actgggaact ggcaagattt atgagggccc agtggcaaag gctctctgct
      601 cacatgcctc acattacaat tgtttcacgt gttagatgat aaaaggctgt ttgaaaaaaa
      661 aaaa
//
LOCUS       KCLA01000218            1036 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3544upu ultra-conserved element locus uce-6807,
            sequence.
ACCESSION   KCLA01000218
VERSION     KCLA01000218.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3544upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1036
                     /note="ultra-conserved element locus uce-6807"
BASE COUNT          334 a          203 c          170 g          329 t
ORIGIN      
        1 tggttcatta tgtgcatttg tgacaaacaa tatggaagag acaactgtac tgaatcaaat
       61 aacttgcaac agtttacact cctataaatt tatttacatt ttttcaaatg aatatttata
      121 acaagtggct ttcccttcac aaacactgta gctcaagcag ctcccattca ttattgtgtt
      181 taggaagtac aagcactaat tctgtgactc agtgacaaag actgttgtaa cttgccagaa
      241 aacaaggcct gcaatatgaa cacaaaatct aggaaaaaca tgctgttgct tccagttttt
      301 caaatgttct agcattttta tgtctccaag tcacaggaat ttggtttcaa tattatatct
      361 gtccttctac atagcacgcc ccaatgaaac agccagtgaa gtttattttg cactttatca
      421 atacagtgta aaccagcatg tgcttacctc cacagggtta ctgaacccaa cttgtctgtg
      481 tgcacagaca gcactttggc cacagatgtg attggttaac tctacaagca aggaggataa
      541 atccacaaaa caatacttca ttcaccaagg aaatctgctg tggattacag cttctctatg
      601 gttacgtctg ttcttaattt actgctttta ttcagttttc aaccataaat gagcccctta
      661 tgaggcattt actatgcaga attgacaact ctttttatca aaaatatttt tggataataa
      721 tttatggtta cgaaatattt taagcagttt gaatagttac attatattct ttcagtactt
      781 aatgatgtag tatcccctgc aaaaatggag gcctgggcaa tctattgatt tcacatattt
      841 atagcaaaac actacagcct tagccataca gaaataaaaa ttttaaaact gcatatatca
      901 tgacaatggc atcacgtttt ttgtaaaagc tcttaaacag catctcatgg agaaatcctg
      961 agccagaaat gtgactaagg gccctgtgga tggaaacata aagtcttttg gcaggcacca
     1021 tacattgctt atggcc
//
LOCUS       KCLA01000219             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3560upu ultra-conserved element locus uce-4211,
            sequence.
ACCESSION   KCLA01000219
VERSION     KCLA01000219.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3560upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-4211"
BASE COUNT          236 a          202 c          159 g          225 t
ORIGIN      
        1 ttaatgagtc taatctgatt aacatcaccg tttgctccca tgtgtggaaa caatgcggag
       61 acaaatttag tcactgcagt tgatgccaca ttgccctggg tacctccgct cctggtgcac
      121 atctggcacc gccagcttta actttcccct caacaccctc catccacacc aacagagcac
      181 agctttgctc gggatgctaa acccagcaaa atccatcaaa ccatctttgg gtaagcctgc
      241 ctgtagttaa ccaaaaagta caatttttac cccgaaggga agatttcatt tggtctgcat
      301 gtgactaggg agctgatttc atttcctgta aaaccccctc aaatactgca aagttacctg
      361 actcagctgc ttgtagaaat caaattcagt ctgagataac agctaatcat ttgtcacagt
      421 aagaagcaat tccctgaaat cggaagggaa aacctgccgc ttcaatccgc aggtctgtca
      481 gattgctaga aattacattc tgctccgact aacctctgca cttggattgc taacaacaag
      541 cagcccggtc tatcaaaaga gaatatcata caaccaggaa cagcttttga tttgttctat
      601 tccaataacc tgagaaaagt ttatggacgt gctttgccgc ctagacctca attttcacca
      661 acctgcatac gggtttgaat ttatagctcg gcggccccgc ggtaatgtag gtaaaattta
      721 caggctgatt atctgctgct tcataggaag aaaattagag ttgattttat aactgtacaa
      781 gtgctctttg agacggcccg tttggatgct ccaattaaaa tg
//
LOCUS       KCLA01000220             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3576upu ultra-conserved element locus uce-5102,
            sequence.
ACCESSION   KCLA01000220
VERSION     KCLA01000220.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3576upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-5102"
BASE COUNT          155 a           94 c          101 g          143 t
ORIGIN      
        1 aaaaagatgc ctatttgtgg tctacaaact gaatatcttt gcaggctcct gctctttcct
       61 ttctcatgca ttttcccttc atcgggtgaa atggaaaggc gacgctgagg atgcctgatc
      121 gtacaggagg ctactggctg gaagacagat tttacagcag aacaattgca gggtgtaggt
      181 tttaggcaat aagcaggtag cctcgttctt tcaaaagaaa aaagaaaata atggaaaact
      241 gtaacattca tttggaggcc tcaaaggcat aaaaaaccca attccaactg ttataggtcc
      301 ctgcaggagt ctacaaaaga actaagcttt ttaagtaaga aaactagatt ttggcccaga
      361 gggccctgtc attgctgctt aatagatgaa actcttttga tacaaatatg ctgtttactt
      421 ctcagcttca gctttcataa aatataacct ttttatgatt tacgacccca gaaaaagtgc
      481 aggatggatt ttt
//
LOCUS       KCLA01000221             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3606upu ultra-conserved element locus uce-336,
            sequence.
ACCESSION   KCLA01000221
VERSION     KCLA01000221.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3606upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-336"
BASE COUNT          208 a          135 c           83 g          206 t
ORIGIN      
        1 atgactcaag ttgagtttca caggtgaagt tcagatgagt tcagatttat tcaagccctc
       61 tcaatgttcc catatgcttg actcaattcc aaatatttaa ttgtcaactc tatataaaac
      121 ttacaatgaa gaagcagagg agggattgtg aactcagctt tccagcacta aggacttcag
      181 cttttttttt taaaataatc tgtcatttat actttttcat agtaaaggtg acagtctaat
      241 tcacatatga ccaacaccca taaatcatgt tggggggagg aaatattcat aaatccatat
      301 caaacagcac ccaaattatg acaaatgaca tggcagtcat aaaattgcac aagcacaact
      361 caccaagtca ttaatttcat ggccatggaa aataaacaga cacatttttt tcgcagccct
      421 aataaatttt aaaaaactca aagaatggtc catctgcttc aaataatttt taatttccta
      481 ttctgtctcg ttcccattag ctattccact gagatatttg ctaaattctt tcatttgcct
      541 cctcccatct gtattcaatt actctattcc caaatagagt tagtttttct ttctcctaag
      601 cacagtacaa aatatcccca cctgtacctt aa
//
LOCUS       KCLA01000222            1107 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3620upu ultra-conserved element locus uce-2857,
            sequence.
ACCESSION   KCLA01000222
VERSION     KCLA01000222.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3620upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1107
                     /note="ultra-conserved element locus uce-2857"
BASE COUNT          338 a          186 c          205 g          378 t
ORIGIN      
        1 tatgtgtgta catgagataa atatgtacaa ccaaactctt gatctgtaag acaaaacaaa
       61 cttaaacttt atattcaaca tttggaaaac gtgaaaacat gcagaaaccc agttgcatta
      121 ctccattaag aggtaaaagt gatctcttca gacatgattg aaacttgtgt taaaggattt
      181 tatcacagat tttgataaag ccagaatttg atttgaagtg cttctttgca ggtgggtttt
      241 tgaagtggta ggacaagttc taattgaaac tctgaacttg tgctttttgc aaagagccta
      301 tggttatcat ttctgctgat ttaagaatct gatgtcaggg cagtaagtat gcaattaact
      361 ttagtttaag tgatagcaac atgctgtaaa taagattctt aattgtgttt gcaagattaa
      421 aattcaggct cattgttttc cccccttact tctttggtgg ctttgtggta tattcacatt
      481 gctacctcta aatgaatgtc aacttgtttt acctcgactg cagccaatcg atacttcatt
      541 aggctgaatt gtcttgtgcc catgcaacct tgaagctgtg gcttaattac cacccgtata
      601 gtgcgtggct cagagagctg tgctcagctg tgtcagtttt gaacaaaagg catgctgttg
      661 cctgtatgta ggaaaaatgg acttttgaac tgaagaacta taaaattttc cgagttaaca
      721 attcatgatt atagcctttg ttataacggg tgtgtcagtt ttcagtaagt ttacatttca
      781 atagatgtct gcatattgca aaattttaaa agacgagtac ctttgctttt catgttcaaa
      841 ccaacattga tttaagataa ttttaaatta atggcaaagt aacattcatc tgaaagagaa
      901 gacaggagaa agtgcagtca aatggcaatc atgacaaatg acatctcttg tctgagagtc
      961 atttttcctc actagactga tttgtcatcc ccacttttga catttttcat cctgctataa
     1021 aatcacattg acagaataag atatttctat gcttaacagt gggccataga agatagttct
     1081 ttgccttcat ttattgtttg cattaca
//
LOCUS       KCLA01000223             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3635upu ultra-conserved element locus uce-3089,
            sequence.
ACCESSION   KCLA01000223
VERSION     KCLA01000223.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3635upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-3089"
BASE COUNT          154 a          132 c          128 g          141 t
ORIGIN      
        1 gcaaatatat ctgcttgctc tgttgcttct gaggagagga gctcatgcag gcacagtcct
       61 tccttctgat tgtcctgaga ccaaactgat gccttaagag ctgaagtata agcaactacc
      121 cgggagctgg cctagttagc atagctctga gggaagggca gcacagagga tgtccacaca
      181 ctaaaggcag gagagagttg cccactgcta tgccaattac tggatattaa tggcaggata
      241 gcatgcatat gcctaaactg ggaagcagaa ggttaataga cgaacagcac cagaagatcc
      301 catttatcag tttctattta tctctccttg ggaggtggca ggtttacagt aaataccttc
      361 tgtcctccta atttcctaat gatggggata atgatggaga atggtgaagt cattaactgg
      421 gacagcctct gtgcatcact ctgtcaacca tgtctctcca agacctgcaa tgaaaagtga
      481 tgggccccag ctgttcacca gattctcatc ccctccccat tctcaacccc aatttcaggc
      541 ttagcaatta aaagg
//
LOCUS       KCLA01000224             252 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3650upu ultra-conserved element locus uce-1979,
            sequence.
ACCESSION   KCLA01000224
VERSION     KCLA01000224.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 252)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3650upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>252
                     /note="ultra-conserved element locus uce-1979"
BASE COUNT           75 a           44 c           55 g           78 t
ORIGIN      
        1 gatccatttg gctttgtttg actttgcctg tcagagaatg agaatgcaag gctgggtgta
       61 atttaatgca aaccttggcc tatcctggtc atgcatatga ctgaccctca gggcaagacc
      121 atcaattttc tattaaagat cagagagttg acatatcaaa gtcaacatct agctgaataa
      181 ctgcagtaac ttgataataa ttcttttgtg gatttcagag tggcttttcg gtaaagtatc
      241 agaaaggtag ca
//
LOCUS       KCLA01000225             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3666upu ultra-conserved element locus uce-4822,
            sequence.
ACCESSION   KCLA01000225
VERSION     KCLA01000225.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3666upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-4822"
BASE COUNT          227 a          205 c          161 g          197 t
ORIGIN      
        1 aggctggagt agctgaagca aagccacatg ttgccctctg tcagctcagc aatggcagat
       61 gggtgtccgg gagaggacca acagggccag tgagctggga gatcatgtct gtgacagacc
      121 tcattgccca ccacaaccat gtctactaca taacactggc ttttcccttt cccctctaga
      181 gaaactcacc aatggcttaa ctccaggaca aaaccacctc atgatgtacc ctgagtgcct
      241 tctgctctct gaagcggcca gtgaatgggc ttgccactcc tgcatcaaac ctcctgccta
      301 cttcagcccc aaaccagctc ccacctgccc ctgggaaagc tgtactgttc ctttaaatgt
      361 ggttcatgtt aaaaaaaaat tgacaagctc cctcactctc aaaagagaga gaaattttca
      421 ttgattgatt tcttcatggc ttcttaaaca gataattaat tcaccgtgaa cctgcggaca
      481 caccgtcgtg agtcgttaat attgtaaatt cacatatact tcaataatcg cctgaccccc
      541 ccgtcacccc gaaaaacaga tagctgtgca gcaaggagga ggggaatggg gggaatcgat
      601 tttcgaagac atgaagggat cacccagcaa agggaagcta ttgattctct tttataagac
      661 actgctataa tatttattct tttgtaaaca gaattaaccc agcatcatgg gtcattccta
      721 tcgaacaact ttcctcacat gtgcacagca gtgttgattg tatcagatga ggtagaaaca
      781 tccaaaccca
//
LOCUS       KCLA01000226             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3681upu ultra-conserved element locus uce-6003,
            sequence.
ACCESSION   KCLA01000226
VERSION     KCLA01000226.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3681upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-6003"
BASE COUNT          203 a          179 c          159 g          188 t
ORIGIN      
        1 gcagactgga agagagcaca gagctagagc agcactctgt tgaaggtcac ggtactctcc
       61 tcctactcca aggatgaaac cccactcgtt tgcttctgtt tttctgagcg aaagttctgt
      121 gttgcagaca tttgggggtc tcagtgcttt gtacagagaa caccttacct gcctgctctg
      181 tttgagagcg gccaagagca aatgccacac gaggcttaag gagggtccta cttttgattt
      241 tctacctccc cccccaatac ttgtatttct ttcagcaggg gaaaacacgc tttggcagct
      301 tctgtcacct gtctgaagaa tatctataaa gcaaaagttc ctgcgtgcag ttaatatcga
      361 aaagcagcca tctccagatg atccctgctg catccaattt ctgccaaaat gctttctgtt
      421 aaacctccat caaacagaca cacggcacac aaaagaaaac ctcatcacca agggaaacta
      481 atccaccggt gcgcaatgta agcctgtcaa ctttttatta taagaagtca tcactcattt
      541 cagtgaagat taaaagtatg actaaattga gaaaatcctc ttagccattc ggaattttaa
      601 tagaggagaa aagggggtga gtaaaattta aactgtgcgt gtgtgtgtgc ccgcgcgcct
      661 atctgtgtac gtgcgtgtga ggcgaataca cacgagcaca tgtgcatctc cacgcccgag
      721 tcgcagcct
//
LOCUS       KCLA01000227             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3697upu ultra-conserved element locus uce-3359,
            sequence.
ACCESSION   KCLA01000227
VERSION     KCLA01000227.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-3359"
BASE COUNT          213 a          193 c          166 g          217 t
ORIGIN      
        1 agatggagag ggaccctcct ctctccagcc ggcacccagt ccacttcaat tcctctggac
       61 gtgctcggga ttttccccgg cccctccaac acaacaaaca ctagggtttt acagcccttg
      121 gaatgattga tgcttcctaa cgacaaaaac tcaccggtct ggagttgggg agcgaggcgc
      181 tggagaagga cacagtagtg tcattaccgt aataacttcg gaaattaaaa cctgcctgaa
      241 actctccgga aagctaacat ccagttcatt acccattcct gttggtttgt tttcaataat
      301 gcaaaaatga ttagaagttt aatttgctaa tcacctgtgt tttgactggc actgggtatc
      361 taagtctctg cagaagtcta aactagccct cgcagaaaat gctaatgctt cgccacatct
      421 aataacatga atccgaaaat caatcacggc tcggttaatc attgatggat gcacaattaa
      481 ttcctcctta gctctgttta attttagagg cgatgatgat cacgagtaag agaaatagct
      541 gtctgtctgg gagaagtggc agcgctcact taccgatcat gtggtttgcg acgtgcactt
      601 ggatatccca ctcgttgtag aaaaccatct gacatttgat gcactggtag gtcttcttct
      661 aaggaaacaa ggggagataa agtttactga aacatacagc ttcaaccctg tcactgcaac
      721 tcacagctct gtgcctggtc atttcacgct ctccagcagc gttcttgttc agcttgaact
      781 attcacctt
//
LOCUS       KCLA01000228             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3712upu ultra-conserved element locus uce-2474,
            sequence.
ACCESSION   KCLA01000228
VERSION     KCLA01000228.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2474"
BASE COUNT          219 a          144 c          227 g          158 t
ORIGIN      
        1 taataaaaaa agtgatgttt ggggagtgga gggaggaaaa catattttcc ccaaaacaaa
       61 gtgcagaaaa gagaggggaa agccccagtg tacccactgc tgtgcgggga gaccacaggc
      121 agcgagagag tttccactca gcgaggaact cgcagatgac tgatctttta ttttacacac
      181 acggagcaca agagaaggag aaagtgcgca aaaaaataag agagagaaag gaagggaaag
      241 agggatgtga cagagagagg aagggacaca gagaaaaaga gagagagaga gacagacaga
      301 gagggagggg ggcaggcaga agagggcttt gaccttctgt gaaggatata aaaaatccag
      361 cagcctcagg ggacacccaa ctatctagca tattgctgtt aaaatgtctg caaaatttaa
      421 tacacttggc atgccatcta atcagtcctt ggaaaccatg gcttcgctcc ctcctgctct
      481 caactgtctc agacctccag cgtttgggat gagctggggt attttccaca gctgacaggg
      541 gtcggtggac gcacacgggg agggctgggg ggttggtttg tgtattgttt ggtttgttgt
      601 tgttgtttgg gggatgcaaa ccgctgtcat ttccccttta aaataataaa gtttgcctag
      661 cctgctgcga gccccagcgc tgctggtggc tgtgcaggct gagctccttg tgtgggcaca
      721 caatcacagt tggaagggac cttgaaag
//
LOCUS       KCLA01000229             990 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3728upu ultra-conserved element locus uce-4175,
            sequence.
ACCESSION   KCLA01000229
VERSION     KCLA01000229.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 990)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 990)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..990
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3728upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>990
                     /note="ultra-conserved element locus uce-4175"
BASE COUNT          282 a          181 c          192 g          335 t
ORIGIN      
        1 tttttaactg acaaaaatct aacatctgag ccttcagaaa aggccaacag aatggattta
       61 cttctctctt aaggactttg gtttgctgtt tattgctatg ttttgcttga attcagcatt
      121 tgtctctgta tagggggaaa ttaagcttgc tgtttttctg tcacacatac agatacagtc
      181 aaagcttgtt tgatgataag aactcaattc agggtctcat cttttgccct tggctttaac
      241 ttgtgccttt gtctgtattg tctgtactgc gaacacttat gcatgtttct gctattatat
      301 atagactaaa tatgtcataa cacatgaatg caaaaggatc aaaaatgcct tcctacttta
      361 taatctgctc agccagaaac agactgtgtc tctacactgc cttttcctac atgtcatatt
      421 atcatcagct gttcttatat cccaaaagaa tactaactac tgatcgattg cccggacatg
      481 tctggccgtg gcctacacgt gccccgggta gttcatttat ttgccacggt ggatttgcta
      541 gagtggaatt taatcaatag ctaattcatt aattctggtc ctagagtatg tagggattgt
      601 gcagtataaa aatgactggc tggcttcagc tttgattgaa atatgacaaa cactacagct
      661 gacagcttca gcaggtgctg ggctgaatat gaattttgct tatttatcct ctataaaaga
      721 aaaaatttgg gcaaaaaact ggtttgtgta gacaagagaa cgttttaata cacatctgtc
      781 atcagacaga gaaaaaagac atttctagag tacggactca tgggatacct gagatataat
      841 acagactgtg cagtttattg tctttaattg gattcatggc atttttccct cttctgaatc
      901 agtttggggg gctgtattat tgatgagaat gctgtaggat aatgtctttg tagcactcac
      961 aaataattgt tctaaaattt gcctcaaggt
//
LOCUS       KCLA01000230             511 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3757upu ultra-conserved element locus uce-5989,
            sequence.
ACCESSION   KCLA01000230
VERSION     KCLA01000230.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 511)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..511
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>511
                     /note="ultra-conserved element locus uce-5989"
BASE COUNT          148 a           99 c           84 g          180 t
ORIGIN      
        1 aatgcatgtg ttttttcatt cttttcactt ttctttttac aagacaaaaa aattcatgta
       61 aacagctgtt ttattgttgt ccttacaatg aggaatgaaa atagacttaa aaaggttatt
      121 tttctgtaag tcacagtcct ccttgttttt gcagggagct gtattctatc tcagcctgaa
      181 ttcataaacc taacttgatc gtcttctgaa gaatttatga attatggtta ataaccagct
      241 ttaggccctt ctgagggaag aatcacattt tgaagctaca aaggtccact aaatagccca
      301 cgggaaatga ccctgcatcc cattaaatat aaaaactgac tactgtagtt ttctatgtca
      361 gaggtaaaac acttcagtct ctgttacctt caagtgtcag agagctccct ctgcctaaat
      421 gctttattaa gattgaagaa gcataccaga tttctgcttc tcagggaaaa ctgttttttc
      481 ttcttgaaat tctttccctt ttacttcggg g
//
LOCUS       KCLA01000231            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3772upu ultra-conserved element locus uce-7361,
            sequence.
ACCESSION   KCLA01000231
VERSION     KCLA01000231.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-7361"
BASE COUNT          303 a          191 c          214 g          327 t
ORIGIN      
        1 tctcagttac ctgattatca gaactgggat cacacactat gtatcttgag ctttaccaaa
       61 gctgctttca ttgctgaaat gttgaggatg tgactgtctt agaaatgcta agggtttgcc
      121 ttgcagattt gtcaaaatac agcagctgaa gaactttcag taacttttac ttgcagatat
      181 attttttttt atcaaatagg tatccattag ggggctcccg aggtttaaga tgatcagcct
      241 tgatgccaat ggcttcggag ctttactttt attctttttg ttttacagaa aaggtcacga
      301 attgcctaca gtgatgaggt gcggaatgag ctcctagggg atgacgggaa ttcctcagag
      361 aaccaggtag gatgctaatc aagaagccct agtgggtggc tggagggtga aggaggtcac
      421 tggcacactg ggcttctcaa gctgctcctt aacagcatta gcaacaactc atgtggaagt
      481 gatactgttt aatgcaaagc tggggtctta atcaacttca aaatgtttct tggagatctt
      541 acatttaacc ctttaacttg tgatcactgt ctgctatctt taaaaaaatc ttttcttctc
      601 ttttctttat tatttagtac ttaagaaata acttgaaacg cgctgtttgc cgacaaagcc
      661 aaggtcttca cctcaaacac atgtaaaagg aataaaaaaa gtacataatg cagctttgat
      721 aaaaatgcag tataattaaa tcaacactgg caggcaaaac aaatgaaagt gagctcgtag
      781 aattaggcag tgcccaactc agtttccttg tgtgattcct tccctaaaca gattttctct
      841 ccttgtagtg agtacacaag ttgtactaat cagagcatgt gttcataagg catattgtac
      901 tagaatgcag agtgcctcta tctcttttaa tggagaaaag cttgataatc ctaaggcttc
      961 ttgatgtccc tgtattgttt ttctggacac tatagtgagg atccttctag actgatgaat
     1021 gttataaagg caata
//
LOCUS       KCLA01000232             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3788upu ultra-conserved element locus uce-5259,
            sequence.
ACCESSION   KCLA01000232
VERSION     KCLA01000232.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-5259"
BASE COUNT          226 a          262 c          232 g          203 t
ORIGIN      
        1 tacagcttgc tgatgcctac aagcctttgc acaccccaag cagcacatgt ccccttgcta
       61 gtaggcaatg aatgtgctca ccacgaagaa gttccatccc agatttgcag caagcactgc
      121 tgtgcaggag aacaggtctg ccctcactcc gtggcaacaa cccagctcat tccaccacac
      181 cctggcaccc cagtcctaaa cctgccaggt gtctgggcca cagggcacgt tctccaatcc
      241 cactcctgga gctgcaaggg ttaagttcag gctgcaaggc gcatctctgt tgcaagagtc
      301 cattacctcc cgccacatta cctcattcat ttcttacatg cggctggttt cttctcccat
      361 gagcaccctc gctggcagac atggctagtg tggagtcccc tccctcccct ggatttctct
      421 atccatcaca tttaacactc tgacagtaac agtctataat gtttctattc tacaaaaccg
      481 ctctgtcaac tccgggcttc cagagcagca actgaggaaa ataaataaca tcaacgccag
      541 gcccgacagt atcacagctt gctttctgct gggggtttat ttttttttct tttgaggaag
      601 ggaaaaaaaa gagagagaaa ggggggaaaa cgtgcagagg gtgacggacg agtgtttcct
      661 tcccacccaa atgcaaggct gggagaccct cagggatgag agcggagctt ctgacgtaga
      721 aggggtagct ggctgctccc accccacaac cctattccac agggatatga tggctatggc
      781 aagagggtgg caggggactg taacctggct ctgcctcagt cagccaaggg tgagctcagg
      841 ctgcctgtac ccatgagcag gaataggcta ggcagtgctc gccaaggctg tttggggcag
      901 cagacaccag gcagtgagag aga
//
LOCUS       KCLA01000233            1011 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3802upu ultra-conserved element locus uce-4808,
            sequence.
ACCESSION   KCLA01000233
VERSION     KCLA01000233.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1011)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1011
                     /note="ultra-conserved element locus uce-4808"
BASE COUNT          330 a          243 c          164 g          274 t
ORIGIN      
        1 atgttgctct atctgatgaa cacccatact tgtgctatta taagggttat ttttcagagg
       61 aatagggata aatgatgaat atcacactgc aggtccatgt tctggattgc tactaccact
      121 ttccattcta tgaactataa agccaagttt actgccccag catccataca caacacgatc
      181 tgccaaccaa cgtctgcaaa cccacaatta caccacgtag aaagtccaat ttttacatga
      241 aggttttctt ttggtacaat ctttctgtca cccatgccct gcctttatag atgagccaca
      301 tacagttctg tttatcttct gtctttctac ctacaatgca ttaactagtt ccagtggctt
      361 tcttgaaagc ataatgactt ttcctgtact ctagtaaaaa tatatcccca caaatcaaga
      421 ggaagcaggc tcagactaag tggctgagaa gatttacatt ctattgctaa ctccgttatt
      481 actctgctga aaaccccata gcatcaatat aatgaatccc tcaacctctg ctgctagcac
      541 aatttttctt cccaacctca ttggctctca actttctgcc tgacctttta caatctgtgt
      601 gtggcagaac ttcattacaa ccttttaatg atgcacaaat ggcacacaac accaaggtca
      661 ccgcacatcc ccagtgagaa cttctccaac acctcccaaa cagagagcaa gctttcattt
      721 aaagagacag gccaggggag aaacaaaacc tgaggacata gcatggggca caacggctac
      781 caacacaacc aagtgaccac ttctaaaact gctatctgat ccaaaagaga tggtttaaga
      841 agcaaggtca tgtcttaagc taaaataaat cacttagaaa actttaattg ttctgtatag
      901 aaagaggatt caaatctgac aaaaaaaaaa aataccctat ggggttatca agagtcaccc
      961 atcaagcaca tcagaaacct tggaaaggtt acagcagtga aatgagtatc a
//
LOCUS       KCLA01000234             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3818upu ultra-conserved element locus uce-2616,
            sequence.
ACCESSION   KCLA01000234
VERSION     KCLA01000234.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3818upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-2616"
BASE COUNT          191 a          207 c          261 g          179 t
ORIGIN      
        1 aggaatggag gagaatggga gaagtgagaa catggaaaaa gagataaagg ggaggggtgg
       61 gaaagaggag gaggaagagg ggaaaccaaa gaggtggcac ttgtcaccag tgctgcacta
      121 ctcagaactc cagtatccta caaagtaagg acaacccagg agagtagttg atgggattga
      181 tcccacccca ccctcccaca ctccacgcac acccccagtc cctcccaatg ctcttcccct
      241 ctcactcaaa cgtcagactc aatactggag agtttctcat aaacatgccc gttgctggag
      301 ccattgaaag ccctggggtt tttgttgtta ggcacacagg ggttggactg gttccctata
      361 cagatgtcct tctggaaacg ggctggcaca gccccatgaa gggcagagac caccggcttg
      421 ttggtggtga cgatggctcg gaagtctggc ctggctttgg gccctcctgc caccacaggc
      481 tgcctgaaga aataagattt gctgccgtgg agcaagcact ggtcatcccc aaaagtgggg
      541 atgaaagggt tttgggtcac ccggtcaggg tatagagact tgctgagcat gtagccccca
      601 ctgctgccgg ggttgttgtg gtggtggtag ctggtggcgg gcactgagga cttgttgttg
      661 gcaaaggtgg tctcactggc tggcatctca aacatgtggg cgtaggggct cccctccaaa
      721 aagcggccct tgtccttgag gctgacgctg cggggggcca gggctgagtc atccttctgc
      781 aggtccacaa aggtgtcata ggaatgctgc cggcggagct tgttgcggtt cttcttct
//
LOCUS       KCLA01000235             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3832upu ultra-conserved element locus uce-3153,
            sequence.
ACCESSION   KCLA01000235
VERSION     KCLA01000235.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3832upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-3153"
BASE COUNT          196 a          157 c          173 g          235 t
ORIGIN      
        1 tatctggggt gaacaaatgc cgcttgcata ttcctgcagt gggttcctct gccagttctg
       61 cttggtgcct ctgatacttc tcccgggttt ttattaccat tgtgcaaata gcgtgctcca
      121 gcattttttc taactatctt ctccctgtct accccccagt gaactgcaat actctaaata
      181 taggtcaccc caggcaatta gggaagagtt gctggttttg aaagatattc agcaggcagg
      241 aagcccagtt tccaaatgag ttatcaggtg atatgatgtt tggcctcagc cagtgattga
      301 cagggggcct gcatgttcac tgatacatta tttaaacatg gtgagatata agagatctgc
      361 actaattact tcgaaggctg tattaatcac aagacacttt aatactcaat caatacttgc
      421 atttgtcaat gaccttgtaa atctcctcca ctttaactct gctgtgtggc aaaagcagtt
      481 gctccgtggc tctgggtagc ttgttttgag tgactgttct cagcaataca tatttaacag
      541 ggtctccatt tccattttga agttcaattt cagaggtggc aataggaaga ggacagatgt
      601 taaggcagac aggtagctgc gttctaacta cagtgtcatc attcttgatg tgaatgggga
      661 agcacatatg ctgaagggga catttcgcgt ggcatcgata gattctgatt tcacttgaac
      721 agtggtgacc taatggtaga acagtgaggt ctttaacatg c
//
LOCUS       KCLA01000236             914 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3848upu ultra-conserved element locus uce-298,
            sequence.
ACCESSION   KCLA01000236
VERSION     KCLA01000236.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>914
                     /note="ultra-conserved element locus uce-298"
BASE COUNT          267 a          210 c          156 g          281 t
ORIGIN      
        1 ctgaaaccag agcctttaat agcatgaaaa gcttttaaaa ttcttgagtt gcttcaaatt
       61 atttccaatt aatacaaggt cacccctttc aatctgcaag gcaaactttt cctttattaa
      121 tgtgttgata ggacccagag tgcattcctc tactcccaga atacagctct gcggcagggc
      181 tagcctgcgc acagttctgt accagatgtg tcacattata agattttcag attcagtttc
      241 actctctctg tcgacagcct gtcatctgtt ggagtttatc atctacccac tggtaccatt
      301 cattggttgc caaagcgagg caggtcacag acaaatagac ttagatctat gttgccacta
      361 aattgaaatt tggcaacaat gtcagccaga gcaaacagct gttattttaa cgacaagcaa
      421 accaattctg tccttttaaa ttatgttaat ataaaacagt gtcacttcac atatcagaga
      481 gctttcagtt ctggagccct ttgaaggcca cgcagactga atctattcag ccttcatttc
      541 tttttgacaa acagatccaa tgttctaaaa ataacaggtg agtaagagag gtggaattca
      601 tgataaaaaa gcctcctgac actacatgca ctgtaatcta tctcttccct gcctacaagc
      661 aggcatatgt ttgcaattgc ttcttctcgt ccccagttac cattccattc cttgaggtct
      721 ggatttcaaa ctggtgcagt tatcaatcac ctagcaggcc ttgtcaaact tgctgaactg
      781 ctggcagccg tactttctta acatttgctg aatttgttcc acttaataag ccctcccaaa
      841 tgaccttact ctaattaaca gcagctatgt aagaaatatg atggttaatt aatgatgaga
      901 taaattccat ctca
//
LOCUS       KCLA01000237             247 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3863upu ultra-conserved element locus uce-2665,
            sequence.
ACCESSION   KCLA01000237
VERSION     KCLA01000237.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 247)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 247)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>247
                     /note="ultra-conserved element locus uce-2665"
BASE COUNT           80 a           37 c           40 g           90 t
ORIGIN      
        1 gttataaaat attctgacat attttaatat aaacaggaac atttgcagtg attgcttgga
       61 cctaaaatgt ttttccactt gacatttgtt tatacttcct aggaaagaac tctatttatg
      121 gataactgaa taagacaaat aaacatctga gagagctgaa aaatcagctt tgattatgca
      181 tgaaaatcta caatgtcatt gtgtactctt gtgccgtttt ctgattgcct gtttattttt
      241 acagagc
//
LOCUS       KCLA01000238             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3894upu ultra-conserved element locus uce-1474,
            sequence.
ACCESSION   KCLA01000238
VERSION     KCLA01000238.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-1474"
BASE COUNT          155 a           83 c           74 g          152 t
ORIGIN      
        1 gctgcaactc aaagtaactt aacccttctt taaaaagacc taagagtaaa gaataaagac
       61 agtatttttc cttttccttt tttttaaaga agccacatga aatgttctcc gagttaagtt
      121 ttaccattca taatgaatgc agtctcgcca ttcaaatgcg accataagta cacagaagat
      181 aagaatttaa ttaaatgtag attaaaacca aacaggaaaa cacactcgct gataatttta
      241 tcccatcctc tggccatatt ttttatactt ccttcttgtt cttctttggg ctatagctta
      301 tcaacatgcc gatagtacca taactcatta catctgatgg tgctgctgaa atgtgcaggc
      361 ttggtgcttg aatttcagag gcacttaaaa tgcaaagcat gtaaatgtct atgttaaata
      421 tattagtgtg gtaatgttag tgaaaagaaa gtgatttctt acaa
//
LOCUS       KCLA01000239            1099 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3909upu ultra-conserved element locus uce-6301,
            sequence.
ACCESSION   KCLA01000239
VERSION     KCLA01000239.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3909upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1099
                     /note="ultra-conserved element locus uce-6301"
BASE COUNT          345 a          169 c          204 g          381 t
ORIGIN      
        1 ggaaacaaca tcctgcattt taattattta tctgtgcact tttttatatc ttctcattgc
       61 ttggatactt catcttatct taaaaatatt tatttgaaat tgtcagtgat caaaggctgg
      121 gaaacaaaac caggctggag atgatttttc cccccctttt ttttcttttg gtggaaattg
      181 gagtgtcagg ataattcttg tgtatgcaaa ctttacatga tgaagcagag tcaaacgttg
      241 catccttaag cgtcatagta gaagattaaa aacagtattc aaatatatga tcaattttac
      301 ctactgagag aattcaaaga ttgctggtat gtcttggttt taattcaaat taagtgattt
      361 gtatttgatt attttacaca tgcacacaca ctccctcaca agcacacgtc tgtgtactga
      421 attgataaag aaagaactct ggttaaataa tccacttttg tctgacaacg gaatcagtta
      481 tagaggtgca aatatgcaga aagctatttg gaaatgcatc ctcgtagttg tcaggtttta
      541 ttatgcagga aggtgtcatg tttgttacga agctgagtgc agatggcaga gtggaagaaa
      601 tggatcacta attttaacaa tgattaatga acagagatag aaaatgaatt acattggact
      661 atcgaaggca agaaatattt ttgagaaaat tttgactcat ctcctgtgct gttctctgca
      721 aattattttc tgaaattcta tatgttgtca acagttgact gcattttcca ttactgtcta
      781 tttctattct taagtacttt tgtgttatta gaggtacata atttcaaaat accaatacgt
      841 tcctgattac ttagagaaaa tatatgtaac agtatgagtg ttccaaaggc tctggcctca
      901 gacattctgc tttataacac atcctcattc ttcaccattt catcacggtt agaaatattt
      961 agtataattt tttcctttta ttaatgacgg gagttagatg gaggagagga gtcattctgt
     1021 gctttttaaa agatgggtaa aaatgtagat gcaaagttaa caataaaacg cagccaagtg
     1081 ggttagcgtg gttttaagc
//
LOCUS       KCLA01000240             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3925upu ultra-conserved element locus uce-1224,
            sequence.
ACCESSION   KCLA01000240
VERSION     KCLA01000240.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3925upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-1224"
BASE COUNT          312 a          161 c          156 g          287 t
ORIGIN      
        1 aaagagttca aagaaaggag ggcagtgagg aagaatatgt ctagaagata tcaaaaaaca
       61 gtgcttcaca tttttcaccc aatttggcat attcttaaaa taaactgctg ctcaatgttt
      121 aaaaaaaaat tttagtaatt atacatttaa gagctatatg aattcacact taaatttgcc
      181 tatattttat ctctaaatag ctagagactt tgcatcccca aaaagtgaac aaattctgac
      241 atgacctcga caagaaaata gctgtaaaac ttccattgtt caaaaaatcc tgcatacgaa
      301 catccccaag tctccccttc cattcaatat atatgaaaat gcaatttact gtacgtcaaa
      361 tgaaaaatgc agttttcaaa ttcatgacaa caggtgctag ttaaatgatc agacactatt
      421 tgttacctag tctcttactc tcatttgcag catgataaat tgcattttag cagagtactg
      481 tgatctaagg ggtcttgaca tgcttttatt gatttgcatg ggttatatgc atgtattcct
      541 gtttgtaggc aaatagtgcc acgagtaaat tcaagtcact gtgcctctgt ttcaagaaaa
      601 ttgcagtcat cacaggggag ccaagatgga gtgaggttgg gtaaaacaga cacatgcaga
      661 ccactggaat cttagaacct ctattaagat ttataggctg caggattctt ttgggcttca
      721 acattattct tagtaaacct tttctgtctt cagttgttta taaaaactgg cagctttagc
      781 aaagacagaa gcttatgttg caggtagcac aatttaacat aatagtgata gccagtcctc
      841 caaatatccc aacactgatt ttgaaagaga aatagtgtat aatcttgatt tcatttacca
      901 taattgaaaa gatttt
//
LOCUS       KCLA01000241             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3940upu ultra-conserved element locus uce-7926,
            sequence.
ACCESSION   KCLA01000241
VERSION     KCLA01000241.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3940upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-7926"
BASE COUNT          195 a          141 c           99 g          168 t
ORIGIN      
        1 aaaaatgaac atggagattg ggccatgtgc aatttctgtg cataacagtc ccagcatctg
       61 agaataccac cacacatttc atcgtgtaca acagaaaata atctcaaccc gttctgtttg
      121 aaaatacgaa gccaaaagaa ggtattgcac ctatcaccat ccacacaaaa agagtgctat
      181 ttttttactt tacatattta gagtgcaaaa ttaaacaaat aaaaggaaca ctgcataatt
      241 tagctttcat tttctatcaa attgctcgta attgtaacca taaaatgata atattctacc
      301 atatgtgcat ctgcaaagcc gacaaaggca ctggtcagcc cctgcaagaa gaaaaatgga
      361 cctgtcgctc catctagtga ccttgctgaa tattgccgct ctcggagcgc ttgtcaaatt
      421 ttgaggttaa ttttgttaca gagagggatc taacacatca ctttgaaaca tgaaaatccg
      481 ccgtgcaatc ctcctgctgc cgttcttcct caaattacac tcccctccat ctacacaggc
      541 agtcacagct ttacataaaa cactcatcac tggaaatatt tgctggttta gttgcaggcc
      601 tct
//
LOCUS       KCLA01000242             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3956upu ultra-conserved element locus uce-4919,
            sequence.
ACCESSION   KCLA01000242
VERSION     KCLA01000242.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-4919"
BASE COUNT          214 a          242 c          259 g          254 t
ORIGIN      
        1 gtctgtgctg ggatcctgac tgctctgcca aattttatgc ctttatcctg cagtggtgtt
       61 ccttccctcc tctctggctg tgctcctctg cctcatccag cagatgcttc tgcttttcca
      121 gccctttcca ctccctgcca tctcgccagc acgctgtggg gctgatttcc ctccttgctg
      181 caatgtaggc tgtaggggtg ggtctgctgc agaagtagcc aagctgatcc ccttttgaac
      241 cagaggggaa accagctttg gatcaaagtg gcagagctct cgctgcactt attaaagcag
      301 ccttggtgct tcatttttga aaacccctca aagccatggt gagaggtggc aactgctttt
      361 aagcaaacgt gggccagcag ttggagggtt aaggaaattg cagaggggtg acacggtgac
      421 tgtgttccct atttgtgagt gttgccagta gcgagaaggg ggaaactttg atttctaatc
      481 cgctttggag gaggctccgt atcagggctg cacagaaaca tccagtcaag cagctccttt
      541 atcataaagg ggattttaat taaaactgtt ctcgcatcat aagcggaatg agcgtcagtg
      601 ccagccagcc ctgtactggg catttatctc cttcaaacca cattaccagt aattgctgca
      661 ttaaatcaaa gtcgagggag attacaggtc tgaattgggc aggcggccgg tggcagtgcg
      721 gggagctccg tgctgccgag ctgctgatat gggaaccccc tccgcccccc agctgggggt
      781 gaagagtcag ggagctgctg gatcccaaga agctctcagt gttacggggt gggaacttct
      841 gtcataacct gggaggagtg gcaggctgtg tgcctggagc attttaagct gctggtgttt
      901 ttctattaat ttcctttcaa aacaaaccaa cccaataata aaacaaaccc tgtggcattg
      961 ctagcccac
//
LOCUS       KCLA01000243             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3972upu ultra-conserved element locus uce-134,
            sequence.
ACCESSION   KCLA01000243
VERSION     KCLA01000243.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3972upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-134"
BASE COUNT          217 a          143 c          126 g          212 t
ORIGIN      
        1 tcagagatgt gttacacaca ccctgcacaa tttatcacca tgctgcctat aattaggttt
       61 gttaacatac agcctagtgc agtcctgttg actaggaact taatcaagtt actattgagt
      121 tcttgtatgc attgcttcgg gtgactgttt tacttgcaga attatagctg caaccaacgt
      181 gaggaaatta gctctggaca caagtttttt attttttctc cctacatgtg aaaatattta
      241 gcaaacagtg acaatgatgg aaaacagtag gaaacaaaat gttctacatt agtataaaac
      301 atgaaaaatg cagcaaggac cctcagtggt acaacatgtg ttatgctggc tggcagtcca
      361 ttaggcttga tagacatttc acttacctaa gtcaaatata acagtctagt attcattaat
      421 ataagaaggg ggttgtggaa tcaagcctac catctggtta gaacgacaga ataatctaca
      481 actcatgatt aggtctaagg agtggaattt cactttaatc tttttcattg ctcgaaattt
      541 ccatctgcgc agtacggcac atcatttttc ttcaagacaa atgtgctgtt tttcatgttc
      601 caaaattaga tcagaagaaa acgattaatc atgtcatggc ctgggaaagg aaacaaagcc
      661 ctgatatttc tctctctctc tccacccccc caaccccc
//
LOCUS       KCLA01000244             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 3987upu ultra-conserved element locus uce-6804,
            sequence.
ACCESSION   KCLA01000244
VERSION     KCLA01000244.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="3987upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-6804"
BASE COUNT          210 a          133 c          173 g          299 t
ORIGIN      
        1 aggttttgga gaaggcgctg acatttctga atgctgctgc tgtttctcac tgtgtgttct
       61 gtggcaccac tcagtgattt tcactcagta taaatgtatg taaattttac tgccttctat
      121 caggaataga gtcacactag gtgattttac tagccattgt aatgattctt ttgtattgca
      181 gctactttta agacgtgatt tgttttcaga ttttggtgct gcaaagcttt ttgtttttta
      241 gctggtgtgt agaacctgag aagtctgcta acccttgcta cttgagacat gggatcctta
      301 agtattactg ctcttttata aaattaagac agtaattact catgcattct tcagggttag
      361 ccgcttagca gcgtgttttc tgtggatagg ttagatcaaa gtgctggcct gcaggttgta
      421 tttttccctc tggtgggatg aagcacagtt gttttgatgt taggtttgat ggatttgttt
      481 gccactgcat tcattagctt cacatcaaaa aactgacagg ctgttaaatg aaactttggc
      541 ttagattttc agcttgactg ttttgaaacc tttgtgaaga tattttgttt ttgtgctgca
      601 gcagcctcaa gcacttatgg ctgcttcaaa ggaagaaaag ttatttagta tcctggtttg
      661 tttgggcaaa agagagacat tgtcttgagg atagctatgt ccatcttttg ctatgcaaac
      721 tacgtatttt ctatcaaatg tatgtacaga cagtatgtgt gacttaaata attttatcag
      781 aaaagaagct atacttaaca cagaaaaaca ctttt
//
LOCUS       KCLA01000245             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4001upu ultra-conserved element locus uce-6926,
            sequence.
ACCESSION   KCLA01000245
VERSION     KCLA01000245.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4001upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-6926"
BASE COUNT          252 a          182 c          244 g          210 t
ORIGIN      
        1 cctccaggca aatttgcagg cagtggttca ggctactgca tcccattttt aacccttccc
       61 atggaattct gtgggatgcc tatctgagcc agtggggctt cagagagagc cttttatcat
      121 ggcctctggt ggtcacattt tttcctggca tgtttatgat cctgcttgca aacactgcct
      181 ctctgcaagg tgtggtagta aaagaagagg aattaaaaga gctgatagag agagtccttc
      241 agtctcaccc cgagatacta cttctgcagt cagggagctg ctgaaaggta ggagcaggga
      301 gagagaagag aaagaaagaa gaaatgaggt agaagcagaa gtgagagaga gaaaatattt
      361 gagatgaaaa gaaattacca tacggcagga tcctgttatt caacctaatt ttcaaaggac
      421 tgcagctgtc gcactgagat aatctgttaa ttataacagt cattgtgttt tggcaatgga
      481 agaaaaaaca ggctctaaac aaggcaaagt agtggggaaa agagaaggga ggcatggctg
      541 tgtcaaaatg catgtcaaat gttagcttca aaactgggtg ggcgagctgg ccgggaggag
      601 ggtccctttc agcagggctg agctgtgccg ctgcctgagg gtggaggata gagggaaagt
      661 agaaaacaca tgaaaacaga gtgccctgtc cagtgtgggg ctactcctcg tactgaatcc
      721 agttcacact gaccagagga tcagctttga ggggctgaag agtcctcatt agcctgtgat
      781 gccacagcat ttgatttttg ggtcacctga aacagctcca cgtgtccccc acactttacc
      841 tctgcttctg ccccacaccg agtgaggact gggttcacca tattagag
//
LOCUS       KCLA01000246             942 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4017upu ultra-conserved element locus uce-3412,
            sequence.
ACCESSION   KCLA01000246
VERSION     KCLA01000246.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4017upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>942
                     /note="ultra-conserved element locus uce-3412"
BASE COUNT          279 a          194 c          206 g          263 t
ORIGIN      
        1 aacggcatca cagaacccat gcaaaactct gagccaggct catccgtgtc atgaccctgc
       61 attttaccag tctcatgatc agacagaatc tctccaaggc atgccagcag tgggaggacc
      121 atcttggatg aagtttcttc agctaaaagc tggacataaa catttgggga ggaaattgga
      181 ggcagtgagt cagttaatct agcagggact ttctgcagaa acctggccaa ctctttccat
      241 taaagagcta gtatttggct agccctccga aggaggctcc gggactgtgt acattaaaaa
      301 tgctatcacc attatggtct gttcactaaa ggtacaagag catgacaaat atatgtaatt
      361 tgcaaattgg ctggtctttt gcaataattt agagacacta gttagaggca atagaaatct
      421 aacaattact gatgtttaag gtttgcattg ttgctctgtg aatatttcat gcataaatga
      481 acttcccctg gaccaactgc tgtttctgat gaggcgctct gaggctttat tgccaaatac
      541 acagcggggc tcccccaatg agccacataa cggatgatgc atcgcctttg cagcttaaat
      601 aatgcaggat atctgcattt tatagagtgg tggtacactt tatttacata tcaagtgagt
      661 ggccagaatg aatatgaaga aatacgtgaa ggaaaggata tggcactttt aatatttcat
      721 agttgtaagc accctgcagg aaaagcccag gcagactgag atgtgagtta aactggctga
      781 tttccactcg tgtgcctctg tctctgacaa gatctcttgc aaacggatga aatacatgcc
      841 ttttcccatt cttgcaaact ttcccagcac tattgaaaac aaatatgcca atcagattga
      901 ctttccattt gtttgggaaa tcatagaatc cttagggatg gg
//
LOCUS       KCLA01000247             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4031upu ultra-conserved element locus uce-7841,
            sequence.
ACCESSION   KCLA01000247
VERSION     KCLA01000247.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4031upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-7841"
BASE COUNT          289 a          181 c          146 g          262 t
ORIGIN      
        1 caaacgaagt aatttataac catgacacaa acagagaagc acaaaagaag ggaaaatacc
       61 gaaataacat aacgttccca aggttcagtt tacaaggacc tcacactaag tttttttttt
      121 ttgcaactct tactagaaac agtattattt gctaaaaatg cagtagctgc caaaagctat
      181 gatccatcta aagcaaacat gtttaagatg gaaatagagt gttaatgctg aagaaagaca
      241 ggattgagta tacaagtttt cttttaaaag tgttgaagca acggcagcac agagctgttt
      301 gtttttcaaa tgattgcact tgcagataag cacctaaatt ggagagaagt acattaagac
      361 aataatagga gtaatcaaat ttcaagcttt ctaattaaac ctcttttttc cgcagaaggt
      421 tattgggaat tcaacactag cctcggttca catgatagaa caatgggaaa attttccgaa
      481 tggttgaacg ctaaccctga caagtgtgga gagccaacta caatacatta tatggtagca
      541 taacctgcca cccacgttgc tgagagaaca gctttcaaac acatgcaccg agctgtaaaa
      601 ccacaaaatc ccttattaca cattgtccct tacttaaggt gaaatacact gttctcccgc
      661 cccgttttac aaatctgggt gctttttaaa ccttcatccc tgaagtttat ttagcagcta
      721 actagactgt ttttcagacg tttccaaatg tcatttttcc tgttttgttt tctaaccaaa
      781 ataaaatcct gttttcacag cacacagtga agtctctcac tgttgctttt ttttttaaat
      841 actacttcca cctgtgcgac attacccgac ttctgcct
//
LOCUS       KCLA01000248            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4047upu ultra-conserved element locus uce-3958,
            sequence.
ACCESSION   KCLA01000248
VERSION     KCLA01000248.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-3958"
BASE COUNT          269 a          255 c          242 g          293 t
ORIGIN      
        1 tttctttcaa aggcagtgtt taatttctgt tatttctgct tcattagagg aaagaagcat
       61 tgaatatctg accctggagc ctttgctttc tccagatgtt tgctttgcac acaaataatc
      121 tgcatgaaaa cagcaactgc taattcagtg gccaaagtgc atcaggaccc taatctaaaa
      181 cctcccaatc cattcagctg tctggcattt gctattatag ggcaccaaca gagaaatgag
      241 gctgtggctt tatcactgca ccctgggtga caacttgatt ttctgctttc accgcaggca
      301 gcagcagccc aacatgatgg ggctgttaat ttgtgcattt catggtgtct gtcagggggc
      361 cgggagagga aggtttcagg ggaagggaat ggagcatgtc ccagcctcgg aagcacctgt
      421 ctgcattgac ggcacagagc acttcttatt agcgtgcagg tctctaaatg cagccccagg
      481 atgacagcct ggcattccca gcacccacac agtgtgacag gcgcaggcag ccggtcccat
      541 tgtttgccct tgatgagcat gtcattaatg gaaatggaag aaagtgaggg ccacatcagt
      601 attcaaatag cctccatcct cgctgccatt caaccgcctg gttctggcgg ctgcagattt
      661 cctcctgcag ctccacttac acattttcac agatttattc ccattgcata caaatctcca
      721 tgtggcccag gccccatgcc ttctgactcc cctcacatgc acgaacatgg tcttcaaagt
      781 catctgatac accaaaaata aactgggggt tctcccttta ctccctgttg tgagttgcta
      841 aggtctcatt agcaaacact tgctgttggc atgcaaggaa atggaaggtg ctgttttcta
      901 aacctgaaat accaagcaag gatgtgttct tactcataag caactgttgg tgcttctctg
      961 ggtgacctgt ttgtttatag tagactgcaa tatatttgtt ttggaacatt tcacctggta
     1021 ggtctgaagt gagaggatta caagggcaag taactaaaa
//
LOCUS       KCLA01000249             981 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4063upu ultra-conserved element locus uce-1368,
            sequence.
ACCESSION   KCLA01000249
VERSION     KCLA01000249.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 981)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 981)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>981
                     /note="ultra-conserved element locus uce-1368"
BASE COUNT          366 a          160 c          186 g          269 t
ORIGIN      
        1 aaaaggaaac tcattctata aatagttctg ttatccatct atgcctaaaa taggtctaac
       61 tctatccagt atcccaatta cataatatag tatattaaaa taaatctccc ttaatgttac
      121 attgcaaagg gtttggagtc caggaggaac cttgcaaggg acagagtgac cttttaaaaa
      181 gaaaaatgaa atgaaaaaca ctttcatttt ccagaattat gcatgaaagt aaaaacttga
      241 cagcatggaa gaacataagc aaatatatct ttttatttga agataaaaag aagcaggggc
      301 tagataggga aaggaaaaaa cctgtgaaaa aaacggatga tgcagttttt acgaataagc
      361 agcttaatgt atcttggcac ccacagtaag ccttgtagga gctcaaagtg cctcaggcaa
      421 tctgtgagca gaatagcaat tttattactt tgtcattaaa ccaatttcac agcagtattg
      481 tttgttaatg agcagcggca aacgagcgaa gatgtcacac actggaatag cagtgagatt
      541 tgtgacccaa gctcagagca ctaagatgga aagaccatgg ctataaaaaa ggaaatactt
      601 tgggatgaaa tgcaaagtct atacagcaga gcttgtgttt atgagctacc attttgctaa
      661 gagctgtgag agaaataaag gtctggaaat atgcagttaa aacagggcct ataaaattaa
      721 aaccaaatta aagtatagca gaggattact gcacaggctg tactctacaa aatatatttt
      781 aagtgatgag gtgaaatcta aatcagtttt gtttgaattc agttggtatt tataaaattc
      841 aatagagcaa tgccaaattc aaaaccaaag cagcagcctc agtcccatgg tctctgatct
      901 atgagcttca ctttgaagaa atccaactta acagtactta attagcaact tgccctttct
      961 ttatcagcaa agataattta t
//
LOCUS       KCLA01000250             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4078upu ultra-conserved element locus uce-5332,
            sequence.
ACCESSION   KCLA01000250
VERSION     KCLA01000250.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4078upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-5332"
BASE COUNT          173 a          155 c          152 g          231 t
ORIGIN      
        1 agaaagacag aggcaagcga gcaattaggt agctcaagaa ccggtgtttt aattgggtag
       61 caattaacga cttctatttt tgaggagatt cactggtgtt caggggtgta aacagagcag
      121 tagagaggga tccttctggc agggctcaat tagtatcaat tagagcccct ccagaatcaa
      181 ctcttctagc taaggtgaca gtttcctgtt ggattgcttc cattcacctc caactttggc
      241 tttgcttatg tgctgttgcg gagacccttt tcctatcagt agctgtgccc tgaccctctt
      301 gagctatatt atatcattcc attttgacac cttttatcaa actttaatga aatgacccag
      361 gcaaacaaat tgtcattaaa ctttccatca ctttgtccct tggtatcgtc ttttataaat
      421 tggacagcaa atgttgtatt gatcttctcg ttcttgcagc tgaacttgaa atgacccaga
      481 ctgcttgttg tttatggccc agagttgctt ttccttgaca tttccatcca cagcgtgaca
      541 tctcttttgt ttttctttct ttcttgtgga gatgaatgaa caagacatac ggtatcgaga
      601 catcctcggt cacggcaacg gaggcacggt ctacaagtga gtgttgaatt tcgcttccaa
      661 tttgtgaaga gaacggcact tctgtcccta tcgagctgga ctgttgctgc t
//
LOCUS       KCLA01000251             934 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4093upu ultra-conserved element locus uce-4539,
            sequence.
ACCESSION   KCLA01000251
VERSION     KCLA01000251.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 934)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4093upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>934
                     /note="ultra-conserved element locus uce-4539"
BASE COUNT          311 a          172 c          163 g          288 t
ORIGIN      
        1 aaatgaatca aatttaatct gctcatagtt gcaatttatt cttcatctca ggacagtgga
       61 tatgaagcgt cggaattttc attaaaagta tgtcattttc acgttgtatt tcatagttgt
      121 gtttgttagt gtaagagctc attaaaattc cctgcacatc tcttggacag tgtacacaca
      181 gtataaaaag aataactaaa tctatgagaa ttccgtaaag cctgtgaaag gaaaacattg
      241 tttctgtagc tgtagaaaat ttataagtat cccatataca aatgttttct ttattactta
      301 aaacaaccct cacaaagcca taaagactag tgctcatatt tgctggtaag tcaatctttc
      361 tttcagacat caagagatga cctcttaaga cccaaagatt tatcaagtca gcagtttatt
      421 cccttaggcc accatcttca gcctcttcct cttccagtca cgtctactga aggactttgc
      481 aatcccccat gaggaaatgg actaatctac ttctttctaa aggacaggag tgatgcctat
      541 accaactgcg ctctatggga taagaaagct aataaaggga aggagactac atctatttgt
      601 gaaaggttca gtgtgatgtt tgtattataa gaggcagagt tagagtgctg tagctgtcag
      661 tcagaagagg ggtattgttg cccagcatca gcaacaacta cagagacatt ttacagaaaa
      721 ataattaact ttttacaagc ataaaccacc tttgagttga tagaaaggtc aaaggtctgt
      781 ttgcataaca aaaatatagg ctgtaatcct tctccactct tcactgtatc agcagaatca
      841 ttaataggta cacacacatg acaatttaaa gaagtgagaa gactaaatag acagcttttt
      901 tattatttag aaacaaactc ttgttcattt gcat
//
LOCUS       KCLA01000252             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4107upu ultra-conserved element locus uce-6094,
            sequence.
ACCESSION   KCLA01000252
VERSION     KCLA01000252.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4107upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-6094"
BASE COUNT          123 a           89 c           80 g          137 t
ORIGIN      
        1 aggtgcatca tgtactgggc agaactttag cttacaattt gggattaaag taaatcctag
       61 tatttttctg catgcctgcc cgctccctgg ctcccagaga ctgctgggta actgcctatt
      121 atcccgtggt tccacttcag tgccctcccc aataaaactt ttcatatcct tataaacgaa
      181 ctagattgcc gtgttataaa catttacact gtgctaacag atcatctccg cacatcagaa
      241 ttggctaaat tcccttttcc agatgaatat attgaaggag attagagata tgatagcttt
      301 tcagattgct gaacccagag aaattagttt agtgagcatt tacagaggct aaattggaac
      361 cattaaatag tggattaaat tgatggtact ttcattgtct gtccttcggt actgctgtaa
      421 aatcaatta
//
LOCUS       KCLA01000253             858 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4122upu ultra-conserved element locus uce-4552,
            sequence.
ACCESSION   KCLA01000253
VERSION     KCLA01000253.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>858
                     /note="ultra-conserved element locus uce-4552"
BASE COUNT          256 a          181 c          183 g          238 t
ORIGIN      
        1 tcagagttgt agagaagctg aaagttttga acaccacagt gtgagccaga gccctccttc
       61 ctcacaggcc ctccacagcc ccagagtttg gctgcacaga ctttttattt gcacacagtt
      121 gtccttaaaa agaataagtg actatttgcc tgttcaaagc cagaaacaag ttgaccaatt
      181 gctgctgtgt tttacttcag ggtatccatc taaaggcaga gagagagaat cagtctataa
      241 tggtttgcct ggctcgaaaa ctccattttg ggccacggag agtcatattt cagagagtat
      301 tgatcacagt gcagtttgtg tttcctcacg tccatgatcc tgtttgcagc cctgtaaaat
      361 aataacagta ctcatgtcag taaggtaatt accattgatc taacacactg tgacaaattt
      421 ttcagtcatg ccacttgatt catacttaaa gttatggcac tgctgactgc tccttaaata
      481 attgaaggat gccctttgta aatcagccca ctctcgccaa aaagtggcat tcttctttgt
      541 tccaggcact ggttctgagc ttcattaggg atttcaaaat taaacagaca gccttccaca
      601 atccatgtac ttttcacttg gagcaactat agtctgatct ggcaaaccac ttgtgacacc
      661 attgttagag aaaagagtga aatgtagaag aaaacagtta aactctgagg aagatcaggg
      721 tatctgtggt gatggagctt gctagcaggt ggaaacaaga agagagcaaa gccgaatatg
      781 cttagtttga aacatccatg aaagcacttg tcatcctctt gtggcaagtc tgaagatgaa
      841 gtgccagcag tgagaaca
//
LOCUS       KCLA01000254             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4137upu ultra-conserved element locus uce-2999,
            sequence.
ACCESSION   KCLA01000254
VERSION     KCLA01000254.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4137upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-2999"
BASE COUNT          207 a          162 c          157 g          272 t
ORIGIN      
        1 aactttgtca ccaatctttt tggattggga cacgtggatt atttttatcc ttccatgtct
       61 ttaacaccca tattttcttc tttcatgctt tcctttacgc atttaattca aatgagagca
      121 aaactgttct gcctgaatgt cataagtgta tggtatataa cacaactatg attagctcta
      181 tgaataatta ccagttgcaa ctaaacaatt cagatggata gtttcattaa gaaaacaaca
      241 tggggtcatt agaaggttct ggtcactgcc ccccgtttta taaatccagt atctgaagtg
      301 gtgataaaat atcccgtgta ggctcccatt aagctgggta atatgcaggc tgcttgattt
      361 gtattgaata tgtgtctggt ggctggaacc caccgtaatg aactagacca caaatcacag
      421 cttaatggga atctacttat acatattgct taattaaaag ttgtgagctt attaacatgt
      481 gtctttggca gtgagctttg gggatgtaat ctctgtgcaa ataagactag gttgtaaaag
      541 ttttatagat tgacgatgat attaaattcc ataccttaat aacccaccgc ttccgcggag
      601 cagggctcct gtcctctagg tctgcaaagc tctggcaaat tatttgtttg taatctctct
      661 gtgctcttgt tttagctcag gaagctgccg ttggctcttt tttggggtgt cccagctgtc
      721 ctggctcgca ggctcttttc tttcatatgg caccacacca ttcgttagga ctgtgccagt
      781 gtttccatta taaacctc
//
LOCUS       KCLA01000255             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4152upu ultra-conserved element locus uce-6282,
            sequence.
ACCESSION   KCLA01000255
VERSION     KCLA01000255.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4152upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-6282"
BASE COUNT          242 a          153 c          179 g          206 t
ORIGIN      
        1 gacagatggg gaggcagatg tacaatgcta cataaaagta gaaaagactt atctaatgcg
       61 agcgccttaa gtgactgagc gcaggcagca gggggctgtg acgggaagag aagggttaag
      121 tgaaaaatga ctgtcatttc ttttcctgtg agcagctata gcttcctcag acttttaaga
      181 ggagccacaa gactcgagtg agagaatcac ttggagattc tcctgtgaag acaaagaaag
      241 agcgtgcgct gaggctccct tccgtcactc acggatgctc tgccaggatt tcccacctga
      301 gacagattgc gacgcgtgtt caaatcactc atgcacgaga agcaatacac aagttcagtg
      361 taaagccact ttaaaagctc atcgggtgca tactttactt gtacaaaata ccttattcat
      421 gatggagcag tgagggccta ggtaattact tgaatcaagg tggcctcaga agtgtttaaa
      481 tctacaagga cacttagagc atgaataatg caaaataatt tgcatctaaa ttttttaagt
      541 gttctttatt caaaaactaa aatgcagttc cgattaaagt ttgatgagtg aaagctgagc
      601 acttcatacc cactgcgaaa cgtctcctat ttgtggaaat tatttcagac agtggtaaag
      661 ggacaaaaga gatcaaaacc caaaatttac aaagttggtg attcatctgc attactttta
      721 agccgtcctc gcttcgtgac gtttggtgag caggaagttc atttcccaac ttgctgatct
//
LOCUS       KCLA01000256             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4168upu ultra-conserved element locus uce-7230,
            sequence.
ACCESSION   KCLA01000256
VERSION     KCLA01000256.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4168upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-7230"
BASE COUNT          281 a          155 c          206 g          244 t
ORIGIN      
        1 tgtgctgcag gtattcagcc tctgctcccc aaccacggga gccaaataac tttggagaaa
       61 aagacccgcg tcatccgcgg ttgttttatt aacacttgca gcacacgact gtgccatgta
      121 ggacctgagt ccacgccaga gccctttcat taccctgcta cgtggctgga tttatgctgg
      181 tggaagtcct agctaaaaaa gcttttgtac aatgattaat tgaccttaac aagtttaagg
      241 atgcttattt gcacacagtt atgaagtgtt gcaatatgtc acaaatgaga gcggcttcta
      301 ttataaacat aatggcataa acagtgaaag ctggttatat ttccttaaaa gttcattgcg
      361 gggaaatggg gaagcttgag aagctaaaca aatccaggca ataatggaaa tgtagcatga
      421 aattacttct gtaaacaaca gccattcatt atttgaacat ttttcataag agagtaagca
      481 gacgagtgtt gatgttaaag ggtgtgtgtg gagggggaag caggaagggg gagattatga
      541 atttcaaaag aaatcttcca gggttatata gacagacgta catctgttta gaaaaagagg
      601 tatgtaaagc gctgattgat ccctgaatat taacaatcga tgccattttc ttcattaact
      661 ttggagtgga gcacaaagaa aggtatattt gatttaagag gaagagaagg gagcactatt
      721 taatgttgat ttggtgtagt gaataacccc agagagaaat gtaaatacca ggctgcaata
      781 acatgacagc acactaatca tatttacaaa cgatattaaa tctgtccatt gtgcttgcct
      841 ggctgcggat tggcccgact gtaattgtca ctgtaaccag cgctgg
//
LOCUS       KCLA01000257             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4184upu ultra-conserved element locus uce-2267,
            sequence.
ACCESSION   KCLA01000257
VERSION     KCLA01000257.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4184upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-2267"
BASE COUNT          172 a          106 c          115 g          227 t
ORIGIN      
        1 ttacctgttc tttcacagat ggggagaaag ttgcaacctg cctcaattaa gcatctttga
       61 catttaagcc tgatttttca cttagatttg tcaccatgta gctttgtttg aaattggcca
      121 tttttcccct atttgtcgtt tctatttata aagatttatc gcagtatatc tgggtatgta
      181 aagactgatg atatggagtg gccatatttg catgtgtctg tccccggaag ggtggactgt
      241 gattttattg gatgtctgca gctattacct tgaaggataa attttcattt ttcatctatt
      301 cttccccatc tagactgtat caggattaac tgtaattcca gtaagtgcct attcaaactt
      361 tttaaaacgt tattccacca ttataaaata tgcaaactag atgaaagaga ttgtggacag
      421 cttgcaagcg cttgataatt tattaatgaa atgtggtgat taattatcgt gtaaaaagtc
      481 atcatatact cttctttgtc cttcccatgg gttataactt ttgactacta aattaagaga
      541 agtattctgc aggttgtaaa cacacgtaga ggaagcggta cctgtagtac tgcattattc
      601 cagtcaggtt tttatttaca
//
LOCUS       KCLA01000258            1056 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4199upu ultra-conserved element locus uce-2397,
            sequence.
ACCESSION   KCLA01000258
VERSION     KCLA01000258.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1056
                     /note="ultra-conserved element locus uce-2397"
BASE COUNT          308 a          166 c          217 g          365 t
ORIGIN      
        1 ttctttacaa aaatctgcct aagctttctt tgcactgcat tcttcgagag tgctcatagg
       61 agttcacgtc acaggtatgc agtttgcagc attttgcata gcttctgttg gcaatcttga
      121 agtcaatttc tcttccttgg gagcagatga aaagatttaa ttaaaataat aggtttgaat
      181 tgtgaaatta ccgtgctcga gaaagggatg taccccttta aaggtattag cataaagata
      241 gcgcatttgt ttattatgct tcaaaatcag ctgctagtat ctctgccaca ggtaacaatt
      301 gacttttcag gcttcaagtt aatagccttg tctcttgctt gtagggatca atattagtat
      361 taattaatca ccattatcag ccttaggatc tggttctatt tgttgttaca tcagcaaaat
      421 atcaatatag aaagtggact ctctgatcgt catggcaact tcatctcttg ggtcaaagaa
      481 agtttatctt atctgtgcat ggagagtggc aaactgttta gggatctagt ttgaactcta
      541 agaacattga tttagttttt gtttgtgaat agaggctgaa ttccaatcac aggggatagg
      601 taagatttaa atattaatgc ccacgggctt gtctgagagg gtgtcattac cattactgtc
      661 ggattgtctt tttgagatga caatggtaga ggagaattgt gtagtcaaga ttatttacag
      721 tttagtaatt tctgcattgg acaaactggt gttaaagtct ggaaattctg tagtgtttat
      781 gcagtgatcc tacatctctc atgcaatctg taggtaggat ttctgccact taaatgaaga
      841 tacatataga tttgggacgg aggcatagaa taccaaatag aaaaggaaat gtattttatt
      901 atgcattctc ctttaagagt tgttttaaac atgtctgaga agtctggaga aacactatca
      961 gtgttccatt cactctcgaa ttaatggcaa atagccatca tggaatccta atgctgcagt
     1021 ctgtttattt ttgaggtttt taagattata caatta
//
LOCUS       KCLA01000259             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4214upu ultra-conserved element locus uce-5453,
            sequence.
ACCESSION   KCLA01000259
VERSION     KCLA01000259.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-5453"
BASE COUNT          290 a          198 c          169 g          312 t
ORIGIN      
        1 gaaggaggaa tataatccca aaggttcact tgaggatcca gataacaatc tgcaggaact
       61 gagcaacact tgggtctttg gctttgtttt cgtttaactt agaaaaatgc atctataggg
      121 gctgaggaaa gactcagatc aaataatact ttaaaatgta gatcattgtt tactttgtag
      181 agaataatct tgttcatttt ctctttagta ttactcttta ttttgtccta tcctgttatg
      241 tgtcatcata ttatggacag taaaattaga agtaatctaa tataaaacat tcatttggac
      301 atatttactc tgttacctca gtagctgcta tgtgattttt taaaacaatt ttaaaaaaga
      361 catgatctta cttgttattc tcctgcttta tactgccagc tgtactttcc agttcacatg
      421 aattcaagtc tactccaatt ttccacttcc ctgcctctaa tcccagtgtt ataaatggaa
      481 tcccatgcta cactagtatc tcttactcac tggcacagac gagatcaata tttcaaaatg
      541 ccgtatgttt tatagatcaa ctgccttgtg cataagaatc aaatgacatc tgaaccatta
      601 cacactattt gtgaattaca caggccaagg actgtgaagc ctgtttttgc acaccctatc
      661 agatcttaaa atgtctgtac tcatctgtgc aaggttttag cgtgtctatg aaactggact
      721 aagttagtca aacccttgat ctcctttcac cataaaccat tcaggcacag cctatagaca
      781 aaggcaaagg tcttagtaag cttctaatca ggttttatag cagtccagaa aaacttctct
      841 gagcaatagc ccttgcacaa gcagaggtga agtcagaggc tgaaagacac atagctggcc
      901 tgtggttgat cactgaggct aattttgtca acactgggat gcctcctctg tggcattcaa
      961 ggccagctt
//
LOCUS       KCLA01000260             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4229upu ultra-conserved element locus uce-2358,
            sequence.
ACCESSION   KCLA01000260
VERSION     KCLA01000260.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4229upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-2358"
BASE COUNT          278 a          170 c          183 g          270 t
ORIGIN      
        1 tggaaaatgt ttgagatttt cactggttaa tgatgatcag tagcatttaa ttgctttgtg
       61 tcgtcattgt ctcactggac agagcttcat tccagatctt gcggaagatg cctctgtgat
      121 tttgggctga tgcaatgatt cctcttaagc aaaagtcttt agaatataaa gcacagggtg
      181 ttttcagtct caggtggatt ttgcttcttc tttcaggtgt cctgaaaaat ggctgatgat
      241 attgatattg aagcaatgct tgaagctcct tacaagaagg tgagaaaaat gtgccattga
      301 ggtcctcttt aatttagaat tattcatgaa actactgctg aactgtaaac taacatccct
      361 ggagccctcg tgatttttct tactggagat gcattacatg taacttacaa gtaaatatat
      421 actgttaatg taattatatt gtgcagtagt ttcacttcag cgtgatgaat aaatgcccat
      481 ctatctctct ttgtagactt gcctaacgat atctcacctc tactcccatg aattcacctt
      541 tgattccagt gtgaactgtc aatcataagg tagtaattga gtgacgtatc gctgtaccgt
      601 ggtcccctag gttaaaacaa aaaaaaatca aaatgaagaa aaatcaactg aaaaaaaccc
      661 aaaacaaaac accccaaaaa ccctctcctg aaattgccag gtccagtttg gtgtagcaag
      721 aaggtgaatg cagtgattgg gaaaacagca gggttccaag aataaccttt tcaccagtcc
      781 catggcaagt aaacatttga gcagtctgct cagtgcaaga acagcgagac tggcttttaa
      841 tgcagaagac tggtggcagt taatctttta gcaaggcaga tggaaatcta ttgctgagca
      901 a
//
LOCUS       KCLA01000261             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4243upu ultra-conserved element locus uce-3675,
            sequence.
ACCESSION   KCLA01000261
VERSION     KCLA01000261.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4243upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-3675"
BASE COUNT          145 a           94 c           73 g          160 t
ORIGIN      
        1 atgctttgtg tcatttgata atatacatga ctaagtttaa tactcaatca tttcccaaat
       61 ccaatttgac tacccaacac ggtttaattt acatgatgat acaatttctc acaccagaaa
      121 gcatagtaac ccttcttctt tggaggttaa tggtgatgta gcttaaagcc ctaaagataa
      181 ttacaaggaa tgtgcttcag gtgacgaact acttttgaca atcccagact gttgatagct
      241 ttttaattat acctcttccc accataggaa acagcaggct ttctcctaaa tagtctgcag
      301 gcatttgggg gttatttatt tatttttcag taaattgctg tgccctgtaa tcaatatttt
      361 aaccaactgt tacctcaggc tccgctctct ttccttcttc tatttagaga aaaattaaat
      421 tcggggttaa ttttcttccc atataaaata aaagagcatc aagaggagaa ca
//
LOCUS       KCLA01000262             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4272upu ultra-conserved element locus uce-7141,
            sequence.
ACCESSION   KCLA01000262
VERSION     KCLA01000262.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-7141"
BASE COUNT          199 a          148 c          162 g          199 t
ORIGIN      
        1 ctcattatca agcagctcag taaggctccc actactgaag gaaataaagt tttacgacga
       61 gagggtctct ccttgtgagt gagaaagtga gtgcaggaat aagatagaaa gggaaggctc
      121 aggagtgctg ggtgaattat agactgcctc tcaagattca cagctcttcg tggtaggagg
      181 ttaatattct cacatgtcat taggtctgct ggctctactg atggctcatt gaatcaggca
      241 gcaaattatt tcctcatgct gcagaggaca ccagacttca aagggaagga accagggtca
      301 agacggctct ccagttcgat taatgagttg ggatcagcag aggttgcctg taggtaagaa
      361 tgtgactgaa gctttgacaa agatgacttt ttgaacagga cttgacccag gccccttact
      421 cccctcccca ccaaatttta tttccaacat ttgcctctga ctgacctgct caggcctgtt
      481 gggatagttt tgacctcctc agtctttgtt accagacgca ggagctgtct gcctatattt
      541 gatgtgtttc tccctaaagg ccatataagc ttatcctggc tcatcagaat actttagaac
      601 tacacagcaa cataagacag agtagattca tttcaaattt ttatttttct catgaaattt
      661 gttgagaagg gggaagaaga agatggctaa aacatatttc agctttca
//
LOCUS       KCLA01000263            1153 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4288upu ultra-conserved element locus uce-1425,
            sequence.
ACCESSION   KCLA01000263
VERSION     KCLA01000263.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4288upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1153
                     /note="ultra-conserved element locus uce-1425"
BASE COUNT          350 a          200 c          222 g          381 t
ORIGIN      
        1 aaaacaaaaa tgtagctatc agatgttttg ttatctgacc acagagtatg aagtggtttt
       61 aattgttttt ctgattaact gcatgctccc aaattcaagc agaagcacaa ttttattttc
      121 catgtcagat cctgtacctc accgatggat gagcatgttt gtgctactgc atgaggatta
      181 atgaaataaa aaccacctct gctgctcctg attgaccact gatggttaat gtaattgaat
      241 tagcagtgca ctaaaataaa tgtagactaa ataaatatag acaagaaaac ctggtgaaag
      301 cttctgtaat gttttatatt aataggctga cagaattctt caattttttt attacgttgt
      361 ccctagatga attcaaagta attggggtgg ttaattttat ttacacagag ccgttcacag
      421 cgcattaaat aatagagata attgaacaag aattgtcaag tgtgtactga tatcagacat
      481 attacagaag ggaatgtgca taaaacttca tttctatgca gccattgttt atggtaatta
      541 agtacacaga tttatccctt ggttgccttc caagcttatg gcaactgcta ttgttgtgct
      601 ccattaatat gtaatcagga aatagtttaa ttttctaatc tgcagtttga gaattcactt
      661 tctaacaact cttaattact gcattgccct aatgatgctc atggttagga aaactgaacc
      721 aataaactcc gcgcaagaag ccagagggga ttatacttcc agaggtggtg ctttcttaat
      781 aaacttgtta tgccttcacc agagggagct cagtgtcctt caaaagcaac taattttaca
      841 tttcagactg gtacataccc atggtgcgaa gagttaacgg accgtgtgtg gcaggggtgg
      901 ccgtaaatgt aattcactag agaggtagat aagcgatgct atcacccttt tggtattttt
      961 cctgctctat actaattgca gagtttaatt gcacaggaaa taatgcaggt ggtttaatct
     1021 agtgtttcca actgccctca cgggtttgtt tttgtcaagt ttgttttctt tcattaacta
     1081 cattagctaa agactgcatc ataaaatcac agataagttt ggactatcaa cggctatctg
     1141 gtatttgttg gtt
//
LOCUS       KCLA01000264             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4303upu ultra-conserved element locus uce-373,
            sequence.
ACCESSION   KCLA01000264
VERSION     KCLA01000264.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4303upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-373"
BASE COUNT          108 a           60 c           65 g          118 t
ORIGIN      
        1 tttagatttt aatattgatc tgcactattg tggaataatt agtcttgatg aaacgggatt
       61 tgtctgactt tgtgttataa taccatcaga agtttagcat cttccccacc atgatgccat
      121 tattaagttt gtattttgac ctattcctaa aggcaattta gttattccaa gagaaggggt
      181 aaaaggggat gccgccactt taaaagcttc aatctctttg acattgctgg cagtgtatgg
      241 gaacattaat gcatctgtca tgataacaag ctaagaataa catctagaca tcaaaccgag
      301 cagagaatcc atctgaagtg attcattcag atctgtctca ttgatttatt a
//
LOCUS       KCLA01000265             970 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4318upu ultra-conserved element locus uce-5315,
            sequence.
ACCESSION   KCLA01000265
VERSION     KCLA01000265.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4318upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>970
                     /note="ultra-conserved element locus uce-5315"
BASE COUNT          293 a          195 c          189 g          293 t
ORIGIN      
        1 agtcttgacc tatgtgtggc atctgctttc tctcctttac tgactttgtg ctcaccacag
       61 atttggtggt gtttttgttt ccatcactgt cagagtgaaa gaagaaacac tagaaaacag
      121 aatcatttca ttctattcat gtactgtgga ataaacgttc acatcatgta aaggagtaaa
      181 atcaagtttt gctgacttcc cccagctgag aattttctcc agtgtattta tatgtaaaat
      241 cacacaaaca tgctatatgg atagggttat atgtgaaaat caatactaaa ttcatcatag
      301 ttagctgcta cagaccacag tgaacacttg ctctctaatg gttaaatgcc ctttgcatct
      361 gaagcccttt gatttattgg aagaaacctg ctgggcagaa catactgtgg agctgattaa
      421 tgtcagcttc tgtcatcagt ttccacttag attcttggcc agctctgaca actcctccct
      481 taaggatcca gaagaatttg aggactgatc caagagcttt actggcatgg gatttgcaga
      541 atgtgttgct tgcaaaataa ggaagatgaa tggaagtaaa attccatgtt ctctactgga
      601 cttgtttctt taactcattt ctctggagaa agataccaat gccaggacca caccagcaag
      661 ggaaacaaat caatagcatg ttcactggtt ttgttacaga tgtcttgcat ttcctttgct
      721 gctttatatg ctccctcgta gcctgtcaaa ctggaaaatg actgcagtga gaatgcagag
      781 ctaccatagc tgtctagatt tacactcacc atcgcacagg gaaacttatg aactacaaac
      841 cagttggtcg tgcacaccat tttagagaag ataagccctt aactgaaaag ggctaattaa
      901 aagtggcaac cactataatt tgcaggttga ccattcatga ataggataaa ttttttaaga
      961 gcagaacatg
//
LOCUS       KCLA01000266             968 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4334upu ultra-conserved element locus uce-6894,
            sequence.
ACCESSION   KCLA01000266
VERSION     KCLA01000266.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 968)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 968)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4334upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>968
                     /note="ultra-conserved element locus uce-6894"
BASE COUNT          337 a          188 c          176 g          267 t
ORIGIN      
        1 gaaatcctag attgggcagc atcagagcag aatggagctc tggcacaaag acaacatata
       61 ggtgagcagc ccccacatca gagacattaa gtatttcaag caaaattcca gatttctggc
      121 aaatcctcct tcacattcct catggtaata aatgattcaa atttaaaatg aacaatagca
      181 agacgatcct ggtgggggcg acccaaaaca tgtgaaacac tggcatggca tcaccacaaa
      241 cccgcctaag attacactaa ggacaaacag gtgccacgaa ctttttggtg cagtcaatat
      301 ttattaaaca agggaaagaa aattagagct gccccttttc aatatttaca ttttaaactc
      361 aagaatggct ttaaagcaca tgcaacatga atgcaagagc tggtgtgata gcagagaacc
      421 ttattgcaca taattaacag acacataatg tctggttact agtaatttcc ttctagctga
      481 gtaaggaaat aatttaatca tgttgatcaa atgaatcccg tgagcccagc gcaacattat
      541 gctttttttg cccctctcta aatctgcatt aactgataag agtctacttg tcgaagtcaa
      601 ggaacccaac cttgtttagg tatccttaac aatacctaaa atacaggcag agttttagtc
      661 attgggttta tcaagcattt tagcaaaacc ttttctaatt cctgatgctg actgcaaata
      721 ataaaagcag agagaaggaa gaaggaaata catttttgca gcctttattt ggaatagaag
      781 caaaatattg ctttaaactg catattccat gttgctctgt tacaaagaag gtatttctat
      841 ggggacatta aaaaaataaa ttaagagtct taaatattgg agtgttaagc gactaactgt
      901 aaattaggat tattctcctc ccttgccccc aaaatatttc cagatgcacc tcagaaatat
      961 gcaggtag
//
LOCUS       KCLA01000267            1033 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4350upu ultra-conserved element locus uce-4431,
            sequence.
ACCESSION   KCLA01000267
VERSION     KCLA01000267.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4350upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1033
                     /note="ultra-conserved element locus uce-4431"
BASE COUNT          294 a          207 c          200 g          332 t
ORIGIN      
        1 attagagaac cagggattgt gattgctcac acaggtggat tttactggtt tggtcattaa
       61 atattgaagt gcctttgaaa aagtaaagtt gataaataca accatgaaac ttcaccacgc
      121 agggtgccgg tgcctgcatg cttacctaca gttcagcaca acttttagac ctgttctttg
      181 ttgtaaagct ctttacttaa tggacaattt ttaattccca ataattttac cgaacaagaa
      241 tatttaaaat tatataatga caatcactcc aaacgatcgt cgtgaagctt aaaattgggg
      301 caccatacaa gtaatataca ttgacttaag aaattgcatt tctgtgcaga ggaagacttt
      361 taaaatattt atctgtggcc aattcataat gtatgacttg ttctggtgtt tcaaaccttt
      421 ccaaactaca acatgcctat ccatttccat tttgaacatg caattggtca ctttttcgcc
      481 ttgattcatc ttgcctggct gccaaccaaa ttttgcctct gtgtaccttc ttgacactaa
      541 taatgcctga gttcccgttc gtttgcgtgc aagatttccc aagcggcagt ttggggctgg
      601 gataaactat ctatcatgat tgcgtacaac taatctgcct caaccagacc accccgtgat
      661 tgaaattgca tttgacaatc acctcttctt ggcgtgcctg aggtgaacat agctacagag
      721 catccccgga agggcatagc aactcctaca tatgttgggg aggatccttt tatttgtgtc
      781 aagagactat tagcaaagca tgtataggca gaaattagtt ttctttcata ggcttccttg
      841 ggtttgggtg agtagctgct gctttctcct aaccaaagta tctgcaggtt gcaaagttgt
      901 ctaattttta atgcattaaa ctgatttaag cctttctccc agataaatca gtgggtatct
      961 aggagataaa aaatgcaaga ggtgtttaaa acgtcatgtg ttgtttgtta ggacattgca
     1021 cgtgaaattc acc
//
LOCUS       KCLA01000268             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4364upu ultra-conserved element locus uce-7067,
            sequence.
ACCESSION   KCLA01000268
VERSION     KCLA01000268.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4364upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-7067"
BASE COUNT          191 a          111 c           97 g          174 t
ORIGIN      
        1 ttttcttata gccctggcca catccgtgag ctggatcaga atcctgcaaa caaaccttgt
       61 ggagcagcac ttcactccca taaaactaag tttgcaaaaa gatcttgcaa aaaaaaataa
      121 tcaaaggcat catagcggtt ttgattaaag tgaacatcct ttgagcttta tagtcactgc
      181 agctcacata tggaaattac atttggtctt aatcagcttt cagaagactg atgcaaatat
      241 taaaaagtaa tgaactaaca agattgtttg ttaatgccac ataaaagtgc taattatcct
      301 tcatttcctg cctacagcta aaccccagag atattgcctc agaaactgtt aaataagttg
      361 cttcacttga aatgtgaata catcttcagc gcttgatgga tttacattta aggagttggg
      421 tgccacataa cacctttgaa aatgtgtcag acaaaggagt acaaggaaga aacttgtttc
      481 actcacagaa agtgtattgt atttgtgact cctacttctt catcaagaag aaagtgcttc
      541 attcttaatt gcactttcag ttcaatttca gta
//
LOCUS       KCLA01000269             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4379upu ultra-conserved element locus uce-3400,
            sequence.
ACCESSION   KCLA01000269
VERSION     KCLA01000269.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4379upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-3400"
BASE COUNT          134 a          118 c          118 g          151 t
ORIGIN      
        1 tttttgccca caggctgata attttcaaag ctattggcaa cctgggaatt ttcctgcctt
       61 atcaccgggg ctcagctaac ttcactaaca ctaatcagag ctggaatcat tcattcaagg
      121 attgcatgat catgttttcc tttagcggtg acagctgcct gagctgtatt agcaatgcag
      181 atgagtcagc ctaataggtt aatgcagaac acgcgaaaat tagctttaat ccccagtgaa
      241 ataatctaac gttttcacat ttcttgatgt tgggatagag acatcgctgg tgactcaatt
      301 aggtgtaatg tagatcaaag caaatttacc ttctggctca accttccccg tagtttagat
      361 agaagaatag aagggttctt tactaattgg ccaatggctg tggggaacgt acggtccggg
      421 tttggcccag ctctgctcag cacagcgctc ggcgccttcg acgacacgcg gctccttcca
      481 acgtgaccct tgcaaataaa gccattaggg ggtttgtttt t
//
LOCUS       KCLA01000270             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4394upu ultra-conserved element locus uce-1845,
            sequence.
ACCESSION   KCLA01000270
VERSION     KCLA01000270.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4394upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-1845"
BASE COUNT          318 a          167 c          145 g          248 t
ORIGIN      
        1 acatccaaaa tatgaatgcc aaatttaaaa ccatttgtaa atcagagtac aggtttgtgt
       61 tcaggctggc ttaccctaag tgcaattccg tagctctgat tccggctgtc tgtgcttgga
      121 ttccctaatc acaaagaaat gcattcttat gaagttaatc agctgtagac acagaatgct
      181 gatgacagtt tccctgtatc tgctttatct aaagaaaacc cagttcctgg taattctacc
      241 aaacacttgt aacattcaca tgaaacttca actggttttg aaacagtaca actgtgccat
      301 gaatgcaacc acacagaata taagccttaa gcccagtagg tttaagcaaa tgtgactttg
      361 tagactaaaa ctacgtaaaa taacatctga taactccctg gtgttagagg tagacagttt
      421 tctttcaaat cctaggtttg gtcctttatt ttattcagca gtgaaagcca tgaatacaga
      481 acgaataaca gctgttacaa ttctcaacca tgacttctaa cgtcagagaa ttcaaggtat
      541 gaacacagta cacagtaatg aaaagtatca aaaattagtt tacctcaaaa aagataaata
      601 aaacaggtat atcccaccaa tacataaaca gatgtttgtg ctacagttaa aatttgctgt
      661 atacaaaaga ttgtaatccc cgtcctcagc ttatgttaga agcaagaata catgagccat
      721 ttaaattgtc agacattatg ctttataagg tatgcacaga agttcaagca ataaatacat
      781 acattagttc aaagccttac aatagctacg caaagcagat gcagaaaagc agatttgcta
      841 ttactagcaa gcaatgatat aagagtaaaa attcatga
//
LOCUS       KCLA01000271             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4425upu ultra-conserved element locus uce-6934,
            sequence.
ACCESSION   KCLA01000271
VERSION     KCLA01000271.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4425upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-6934"
BASE COUNT          216 a          136 c          160 g          253 t
ORIGIN      
        1 ttttcataga gccattttac aagcatcagt gtatatagct tttggtttaa tccatgtatt
       61 ccaagtaact agagccagtc agcctctatg catatacaaa catggttatg ttctgtgata
      121 aacttacgca aacgtattaa aagtatgcta ctgtggtagt gttgtggtag tgttgtgttt
      181 tcctctttat taagtgtaag ttcacttaac caactgagcc taaactgctt gctaaaacat
      241 tgcttttaag ctagctgcag gttccagtgt tgtaagctga aagcttagtg cctattgcac
      301 ccatcacttc ttctccccag ctcaggtatg agtgtacagg ctattgataa atgtgctgac
      361 ttgggagaga tctgtctgat ctgttcattt agatgatgag gtaaccgtgg ggaagttcta
      421 tgccaccttc ctgatacagg actactttag gaaattcaag aaacgcaaag aacaaggatt
      481 ggtggggaaa tatcctgcga agaataccac gattgctctg caggtgattt tgtttctcta
      541 tttttaacta accattttgt gagcttactt gaaatagcag gtagatgaat attgatgatt
      601 gtgcagtgct gcaaggattt tatttagctg ggacacttta ttcatcagaa aagtaaaacg
      661 taatcctgct ttgctatctg tgacaaggta agtgcacaac gttattcttt gtggattact
      721 ccaacagtag ccatggttat aaagcttctt cagataaaca aagtt
//
LOCUS       KCLA01000272             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4439upu ultra-conserved element locus uce-6204,
            sequence.
ACCESSION   KCLA01000272
VERSION     KCLA01000272.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4439upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-6204"
BASE COUNT          190 a          136 c          142 g          253 t
ORIGIN      
        1 cgtgacgtgt ccgactttga aattaagact cccttttgga tgcacagatg aaatatatct
       61 atccctcccc cctccttata acctcttctt ctcgtcagct tcacgtttat acgatttaaa
      121 ctgatttgat ttctgggcga gaatgaccgg gttgattttc tttttacaaa gaaggtttat
      181 gaggcgtctt aaaaacgaag tgttttgttg ttgttgtttt gcaatgtgtg ggaaatactt
      241 ttatgttcac acagtcctcc ctatgaatag ggataatagg ttcgggatcc tcattgagat
      301 ttgaagtttt ttaacagaaa ttccctaact tttgctcgtt ttctcaactt ttttcgtagg
      361 aacaatgcca acattgaagc cctcggttgg agtctgcaca gttggagatc tttggtgcca
      421 ttttagacat ctttggattt catcaatcaa actgactgca attttccata aaaaccctga
      481 atttgggtca gaaagtgggc aaagcagata aagatcgttc gagctgtctt ataagatgat
      541 aaatagatat cctttcagtc caacaatgcc agaagtgcag ttttgtaatt cacttccatt
      601 ggttttgaat gcagtgagtc gaaacaattt atacatgttt tcccatggtt agaagatgtc
      661 tttaaatact tgtcaatagt aacttgacct ttttcttcac tgggctgcgc agaggtgctt
      721 t
//
LOCUS       KCLA01000273             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4454upu ultra-conserved element locus uce-4423,
            sequence.
ACCESSION   KCLA01000273
VERSION     KCLA01000273.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4454upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-4423"
BASE COUNT           61 a           80 c           55 g           60 t
ORIGIN      
        1 cacccccgtc cacccccctc tccgccggca gcctgttgcc tgaagattta atccttcatt
       61 accagttaaa acaaaaccac caattaggca cccgaacacg tccgcgttaa tctcattaag
      121 gtgacggcac caaataaatg ggaactattt ttgtgctctc gctgggttcc cagggcttcg
      181 ccaggccccg tggtcagata caaagccctc gcagctccgt catttagagt catcgggttg
      241 tggactaaat gtggca
//
LOCUS       KCLA01000274             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4470upu ultra-conserved element locus uce-2901,
            sequence.
ACCESSION   KCLA01000274
VERSION     KCLA01000274.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4470upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-2901"
BASE COUNT          213 a          137 c          170 g          215 t
ORIGIN      
        1 cataacctag cacagtattg ttctgtaggc ttagttcact taaactggtg caactgaact
       61 tgtagcatga tacatagagc atttccacac acagcatggg tgtccgtgtg tgcacacaca
      121 tgtgcctata tgtagatgcg tatacatgtg ttgcagtggt cccctgtgca tagtttatag
      181 tttggagaga aatcatcctc catcattcgt cactgccgag ctgcagcaga ccaggccagc
      241 acatcatttg ttaacagcga caaagccgca ctcataaacg ccgacatgtt acattaattt
      301 ataggcactg agtgacttat taaatgtgac gtgtgaaata taacagggcc cggtatggat
      361 gattaggttt tgggctttga attgttgaca aggcaggggt aatgaattgc gggacacaag
      421 ctagaatgtt tccccctcat tagtcagtat tagctgcatt aatagtaata attggatata
      481 ttcatcattt aaaatgtttt aataaatgtt tggacagcac ctgatctagg ctgtcaaata
      541 ttagactgga aggtttgtga tgggagaaaa attatgccat tccttctgca gagatttata
      601 cagcctaagg ggtgccattt gccaatgtcc tctaagaagt aatgggtgga ggtagtttgg
      661 aaaaagacag tgcagcaaga gagaaaccag cctctctcac atttctgaaa gattgttttc
      721 tagacagtct gtggt
//
LOCUS       KCLA01000275             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4484upu ultra-conserved element locus uce-4483,
            sequence.
ACCESSION   KCLA01000275
VERSION     KCLA01000275.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4484upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-4483"
BASE COUNT           74 a           45 c           32 g          105 t
ORIGIN      
        1 atccatttct cagggtgtat ggattttttt ttcaagcacc cttttgaact tccttcagtt
       61 ttctgttttt gatgatagtc atgctgacaa ctttttttgg tccatcaaat tctgtagtac
      121 aattacatga atttactttt aataaattac catctttgca tatatcagtc aaaccatgaa
      181 gactaaacac ttgcaaataa aatgcattat taatttaatt gtcacagcct atttagctag
      241 cttctattag tatttg
//
LOCUS       KCLA01000276             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4499upu ultra-conserved element locus uce-6440,
            sequence.
ACCESSION   KCLA01000276
VERSION     KCLA01000276.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4499upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-6440"
BASE COUNT          237 a          152 c          215 g          239 t
ORIGIN      
        1 tccaaggtct ctgttttcat ttttcctagg gatagcagaa gctctggcaa tatctgtttt
       61 tatatagcca gcagagagag agcaagagac tgagcaggag ggtgtgggga ggagggtgaa
      121 aatactaggt gaatggctga cccttgagtg ccttagactg tctctgagaa ccacaacctt
      181 atcaagaatc gctgttgtgg cttctgtggc aaaggatgac aacaaaaccc agcacaatta
      241 ttcagacgcg aggcctgggt tttaaaataa atgcatttgg agcagcgata tggaaaggag
      301 gagaaaccca agtgttgctt actgggggcc ctgcagccag aaaattattg tgtttctaat
      361 ggtattgatt ttttgcagca gctgatattt caatctggat gcagcatgtc tgagagtcta
      421 cgcacactgt caagaagaaa tatgatagtg tcttaaaaga ttaataatat cgctggtcct
      481 caggaggcct gtcttaattc actggcctgt tccttggcat gtactgtaat ttatctagtc
      541 tgatttgaat agcaaatggc aatcggctgc cattagggaa ataggcatca gtcttattga
      601 tccaggatgg gctggatttt atttaaggag agctgcaaaa tgttattagc ttccggatga
      661 gaggctggag gtggagaatt ttttgcagtg ttccaagggg agtgaattac actgaatctg
      721 aaaagtcctg aaacagatag caagagggga cagctgctac caccctttcc aaagacacta
      781 gtcatttcca gaacaactgt tctctttcct gggttctttg tatgacagta ttgatgacgt
      841 act
//
LOCUS       KCLA01000277             619 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4514upu ultra-conserved element locus uce-1126,
            sequence.
ACCESSION   KCLA01000277
VERSION     KCLA01000277.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 619)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..619
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>619
                     /note="ultra-conserved element locus uce-1126"
BASE COUNT          211 a          113 c           86 g          209 t
ORIGIN      
        1 atatatatat aaaatataca taaataaata aatcagcaca cttcaatcca aaggggttac
       61 agcaacgagc ttaactctct gtatattttt ttctttaaca ggatacttta gtataacttt
      121 tgttaactca gtagtacaag ctatctctgt tctacatttt tatagctaca agagtgaaat
      181 ataacctaca acatttacat ttcacatatc ttggtataca aacagtactt attgaattgg
      241 agccaaggac caaaagactc tttaaaaatt atttcaccat ctgatagagc ttcctgtaat
      301 ttacactctg tttcttctgc aatcttctat atcatttaag taatctcatc gtttgagttt
      361 aaatccattc caactggaaa tcctggagaa acaggttact gcaaactcac tctctatata
      421 caagttaagt aacacagcgt tataagactt agctatttat cctaaaaccg atatacacat
      481 atttcactac gctagacaag tcttaggatc tgtatttcgt ttctttaaat aaagcacaaa
      541 tttcgaagta gctggtaaaa cttacaataa gatggtttcg aatgacaaat gggtagggtg
      601 agatttcttc ctgctggtg
//
LOCUS       KCLA01000278             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4530upu ultra-conserved element locus uce-2802,
            sequence.
ACCESSION   KCLA01000278
VERSION     KCLA01000278.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4530upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-2802"
BASE COUNT          131 a           75 c           92 g          151 t
ORIGIN      
        1 ttgccactga agttattttc agatcatatg gatttttcat tgaaacatct gtgttaactt
       61 ttatcatcct tgctctgctt tgtaattttg gaaacagaca taaagaatga gcaacacaga
      121 gcacagtaat atagtgggaa gcatccttca taagtcaatt gaggaattta ataatctctt
      181 cagaaataag ctctgcagct atgagaaaaa tgtgtgggtt aaaggccttc caattaaaaa
      241 aggtttctct gtggatttat aggctggtgg ttagctcttc ctgttcgtgt ttccatggca
      301 actgtcaggt agattttctg ctacttgcta ggaagttgga aatgttgagc ctggttgagc
      361 ctttcaattc actgaagctt aaattaaatt ctttgcaagg aaccagcatt tagcctgggt
      421 catttattcc tatctaggag agaaatcaa
//
LOCUS       KCLA01000279            1039 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4561upu ultra-conserved element locus uce-1392,
            sequence.
ACCESSION   KCLA01000279
VERSION     KCLA01000279.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4561upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1039
                     /note="ultra-conserved element locus uce-1392"
BASE COUNT          305 a          166 c          190 g          378 t
ORIGIN      
        1 ttttttcagc tgaggaagat acaggaagag agtagccctt attaattcat cttttccttt
       61 caagtttgag gggcccatcc ttgtgttgat atgtatgagt aattcccgtt aatggtgatg
      121 ggagttatgc atgtgcactg acagaagaat agacccctta gtgttcaaag cacatgaaat
      181 ttacattttt tccattgctg taattgagat gttgacaaat tggagaatat tgatgagcct
      241 ttgttttaag tatttcttgc caagtttgct ttattttttc ctggtttgaa caatggtgtg
      301 ggttcaacat caatgaataa gggtaaagat aactttgtat ttcaatattt tgatgtgcca
      361 atatgaaata aattgtctta ggcaaatgga atatgctgtt ttaatcatta gctatgcatg
      421 aaagaaaaat tgatgttgac atctttgctg taaaatcgtt gtaatggggc cttccttaca
      481 attcattttt gtaaaattca ttttgtacat tttgcagcaa ttgaacaatc cctgcactgt
      541 gaataggcag aattcccaga aatactgaga cagttggccc agtaactgct gagctcacac
      601 tgcacaccac atgcacatta accataatga tgccagaacc agcttagcta aatatagaga
      661 catttagtat tttcccatcc tatcttttct ttttgtctac tgcatgaaca aatacattct
      721 cctgcagttt ttgttggatg gctggagttg gtgaacattt aagtccttac tcagtattca
      781 ataagtagca ttaaaatttg gtggtgaatt tttgcttcac tatagttttc taataatcat
      841 tctggtagca actgcagatt cttaggtttt tattaaatta aagcctagaa tggctgtatt
      901 gtacttgtat ttaagattct tgcctcactc tcagctttta atccacatag gtttttatat
      961 ttagatatag ataaaaatct atatatgcat tacaaaacat taacttccac atctgaagta
     1021 tgttgtgtgg gggtttaaa
//
LOCUS       KCLA01000280             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4577upu ultra-conserved element locus uce-5361,
            sequence.
ACCESSION   KCLA01000280
VERSION     KCLA01000280.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4577upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-5361"
BASE COUNT          181 a          169 c          127 g          224 t
ORIGIN      
        1 gaaatcagaa gcattttatg ttatttgagc tcatttaact tttgcagaaa gaaatgttag
       61 cagtctttga ccttaagatc cttagtgatt gtttttttcc tcctctcccc aaccccccag
      121 gtttgcagct aaaactgtgc acagtgggtc actgatgcta gtcacagtgg agctgaagga
      181 gagctctaca gcgcagctcg tcataaacac tgagaaaacc gtgattggtt cggttctgct
      241 gcgggagctg aagcctgtcc tgtcccaggg gtaacctgct tacatctgga cttcagaatc
      301 tggcacacaa caaaagtgct tggcatccac tactgctgcc tttcatttat aataatagcc
      361 cttccatctg gcagtggggg aagaatacac tcttgacatt cttgtcttct gctttagaat
      421 gctagtgtgt atctatcatg tatgccagtc ctttcctttt tttctgcttg ctaaccaaag
      481 aacatatatt ttactgacag ttttccatgc ttttaaatgt atttcccatt tgttctatcc
      541 tagtccttcc ctctctgctc ccttccccca ctacctttct tccccattag ttttccccac
      601 tgtaatggac aaatactaga taataaagtt caagggaaat cacactgctt gaaaactgag
      661 ttaaaatggc aggtagattc aagcaacata tacaactaca t
//
LOCUS       KCLA01000281             899 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4593upu ultra-conserved element locus uce-6379,
            sequence.
ACCESSION   KCLA01000281
VERSION     KCLA01000281.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4593upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>899
                     /note="ultra-conserved element locus uce-6379"
BASE COUNT          308 a          190 c          114 g          287 t
ORIGIN      
        1 gttaattctg aacctgcaga caccattatt tttttaattt aattaacttc caataaagct
       61 gcttatactg gaaacaataa aagtctttct accgtgtcac tcttcctgcc ttaacgtaca
      121 ggcacaacac agagaggcct caagaaagct ccaggcattc taagaaaaga aataaccaaa
      181 tagcaccaaa tatttaattt tctatggtgg aaatgagaaa caggtgtaat taaaataaca
      241 ctttttaaat taagtgacct ctcttgacca accatctgtg aataattccg attttcttcc
      301 cattattact gtaaaattaa aactagggca tataaatgac gagatcctct ttaactatct
      361 ttaagcacca gcaatatata ttttccacca gttaaaatcc ttaatgatac caaaaatccg
      421 tcaagcataa ctcccccaat tcatttgcct gaaaccatca atattttatc atgcatttgc
      481 agttggcttt aatttaacag tccaggttac taatcaaaca aaacacccaa gtcattaaaa
      541 gttagcgtgc catttagaaa gtgcatttca cgtttattaa aatatctttc atggagccat
      601 tagaaggcta aagttttaat tacaatcaga tatttagttc tacttcagtt atgcttttgg
      661 cactctcttg caactgcctt gattaatctt ccaggcagag ctcatccatt accttctgaa
      721 attattttcc tcttaacttc ttcataattc atcttttttc ttaacccctc caaacatgta
      781 aaatgcattt aaaaggtgtg cacaatacct gcctgaaaga ggtcattaga aagattccat
      841 ttcaaatgca atttattctc aaaagtacca aacagcccta aatcaagcag aagcattga
//
LOCUS       KCLA01000282             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4609upu ultra-conserved element locus uce-6997,
            sequence.
ACCESSION   KCLA01000282
VERSION     KCLA01000282.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4609upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-6997"
BASE COUNT          250 a          161 c          185 g          268 t
ORIGIN      
        1 agcaattttt gcccttccca gtggttacag gtttatagtt ccataattat ttaatacttg
       61 tgcagtagat gtgtttaagt gctcttcttc tgatgcagga tgccttgctg agctgatttg
      121 gagtgactcc ctgccggatt gatgtcgatc tggtggcaaa tattattaaa tatttgtctg
      181 atacctattt gcaagtagga aaataatttt gctgccaagg gattgtaaat gtgtgaaaaa
      241 cccctgtgac agctgacttc actcactgtc tccatgctgg cgtccgcttg ccaaacttgg
      301 aagactaaga tgaagaacat aattaaggaa acatatgaag gccagcgcag ggtttgagat
      361 taattagctg cgcgtcaata atctcatcaa tatccgatta acaaatgaca cattgcccaa
      421 tgaaacatat tgattcattc acactccaca ctgttaataa attgaagctg ctttgctaaa
      481 tgagaaagct gacaaaataa tagcttccca agacttctcc agtcttgtga taaaaccaga
      541 aaattagccc aaagtatatt gaatttagca gcactttcac cgcactttgc agcttgttaa
      601 tgcgtgctgt ggaagttggt ttccacagct aattgctaga acagtcccat taatccatgg
      661 atttgtatag aagtaggaac agaatctctt ttaccagggt tggcacaagt gacgttgacc
      721 tcgtgtgtaa tgttgggact ggagctttaa tgggtttttt ggttaaatat tataaaatat
      781 tagtgtctaa gattggtgca gaacttggct cttaagtgtg cgtctgacca tgtcctgaga
      841 taacctttgg gacagcagtc aagg
//
LOCUS       KCLA01000283            1002 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4625upu ultra-conserved element locus uce-1342,
            sequence.
ACCESSION   KCLA01000283
VERSION     KCLA01000283.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4625upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1002
                     /note="ultra-conserved element locus uce-1342"
BASE COUNT          320 a          173 c          173 g          336 t
ORIGIN      
        1 aaaatgaata gaagatttga atacaaatcc tagagtgcct tccttttaaa tttcttagct
       61 tgtttcctat ctctctttct gccactatta ttgatataag taatccttca acatattttt
      121 atggatgatt aagaaaggct gacctttcct ttgcaggtgc aaataggtag ttcttcagag
      181 gccataaatg aatgacaaga taattctatc catttaatat tgaagtgatg ttgatagtat
      241 cattcttctc atgtttgaaa caggaaagta tagagacctt tctccctcac tctgttctgt
      301 tttatgtgat ggattttctc tctgactaat cgctgtcaca ttaacctgca ctatttcatt
      361 cttcagagct gtcaagataa tgacgataat cgaagtggct cattgtaggt aaaggaaatt
      421 atatgagcaa agtaatatca taaaacagtg tttaaatatt ttaatttcat ttgtcagggc
      481 tgccccaaca cttcattaca catataacca tccctcatca gtggaattag tgcattattc
      541 attactgtta attattttca cataatggct gccctgatat atttaacctc cacattatat
      601 ctcagataat gggcctgtaa aattgaattg tgtgaagagt ggagttctaa agctcatttg
      661 cagaacatca aagaacaaag aagaggaaaa gaattctaaa tgggacattt cacccagctg
      721 ggaccaaaca tttgtttctg tctgatttgc atacagaaaa taggtggttc agaagtggtt
      781 taacattgta catgctgtct gctcccatta catagccaat tagaatttgt taatgtctca
      841 agtgtttgag acaacttacc agctgaacta ttgtctgaat agcagtgagc tggaaagtta
      901 acagaagaaa gcagactttt ctgaaggata gactgcaaga tcatatacca tattaaggtg
      961 tcacctaaat taatgcttct attgatagat atctgtatta ca
//
LOCUS       KCLA01000284             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4640upu ultra-conserved element locus uce-4349,
            sequence.
ACCESSION   KCLA01000284
VERSION     KCLA01000284.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4640upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-4349"
BASE COUNT          153 a          193 c          158 g          110 t
ORIGIN      
        1 tccttcacca ccctgtgcac agaagatcta aattccttag ctctcatcat ctggggacat
       61 cactacatca agaaaacaca actgtcccgc ggcaccagga ggaggggtct cctcaaacac
      121 tgcccagcca gtgggcttgg gtgagccgaa gcaaaaatcc ctcggcaccc gcagggttaa
      181 cgaagcagcc caagatgctg ggctccacaa aaaggaacct ttttcctcct gtaagagctg
      241 gaagtacttg ggcagaactg gatgggcagt ggatcagctg tgtggcgcgc ccaggctctc
      301 cagttagcgc cgcagggtgt taaccccccc agagcagggg taagccctgc tgccaaggtc
      361 aactgcacac atgtactaat tgtattatga gcttgacatc tagtggccac ccctggcagg
      421 gcaaagcagg caaaggttaa atcagcaagc cttgtcaaag cccttctaac tacccaccct
      481 cagggagagt cctagggaag cttcctggca ccgcgcagct cccccttgct cctgcagcag
      541 cccccacgca ggcagcaccc accctggctg gcagctcctg gagaaggtca ccagccaccc
      601 caaaggttgg gaaa
//
LOCUS       KCLA01000285            1070 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4654upu ultra-conserved element locus uce-70,
            sequence.
ACCESSION   KCLA01000285
VERSION     KCLA01000285.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4654upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1070
                     /note="ultra-conserved element locus uce-70"
BASE COUNT          330 a          229 c          199 g          312 t
ORIGIN      
        1 ttttgttctt tagaaggtac attatcttcc tctctgttcc acctgactaa actggtggta
       61 tctcttctat cacctgactg agtagctggc tgcaaataat gggacaaaac aatccactat
      121 tgttgcagga gacaatgacc tttcatgtcc ttggagctca ctatgacctt tcatctttcc
      181 tatcccccag tggtctctcc taacagctac aactacaccc agttaggctg aattccagac
      241 tgtcataaaa agacccgtgc ttttgaaaca aaaccaattt ttacaccaag gtggaggaga
      301 aacacaggtc cattgttcct gcacagatgg aagttagagt tactaaggca acagccctaa
      361 tccccctttt taccaccttt ttcacatcat tggcctatca agtgtgctac cttttaactc
      421 ataagctcaa aagctggtag tctaactgac tgccctaatt agctacgatt ttcacagtac
      481 agacaacatg atgagctaat cgaaatttgc aaaataatga cgtacctcca gcaaatattc
      541 ctcctcctga ggcccagtct tagaataaca ataatgagac cattattaga ggagggcatt
      601 aaaatgctgc actgctgcta aacagagaac ttaattgttc tagtcttgtc cattgaatca
      661 acaacctatt gttgtggact tgaaaaataa aggactggag aatgggtgcc ataatgattg
      721 gtctgtgctg ccataccagc actctgtaga attgttttcc ttttgaaact cttgatggac
      781 tagtagtttt gtttaaaagt aatataaaag gcaattgtct ggataaaaag tcctatttat
      841 tgaaatcttt agaagcagtt gcatggattt gttcatgacc cccaagataa aaacataggg
      901 accataataa tgctatttgt agagaccact gcttgtagtg acactagata acactgtcct
      961 gtctagctac tgcaaaacga aggctggcat ttccttggca gacagaaatc atgacagaag
     1021 gtcaaacagt gggcagactc aattaatctg caaaaaggaa gatgttttat
//
LOCUS       KCLA01000286             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4669upu ultra-conserved element locus uce-2231,
            sequence.
ACCESSION   KCLA01000286
VERSION     KCLA01000286.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4669upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-2231"
BASE COUNT          201 a          105 c          119 g          173 t
ORIGIN      
        1 gtaagctgga tcaagtctac attatgcaag aaatatgtta ggtttcttct ctagctgtgc
       61 acaaatggct gggaaaagct ggatatagcc ccatcctata aactggaatc agaaataaat
      121 tgaaagattt ataaactgga ggtgcaattc ttcagctaca ttagtttaaa gatggtaaaa
      181 tgaatgacta aagcattcac tcacggtgtt ttatgaagca gatctaatgt gcaggttttg
      241 tgacctgcag tgactttaac ttctcagtaa atcaaaaagc ttaacaaata ttaagatggc
      301 aaagattacc tgtgtgcacc agattttatc ttttatccgt tatcatttag gaaatgaaaa
      361 gcttgagtcg gaaatcagac agtcaggcac gtgactcggg cggtctggca gctccacaag
      421 acaagaacct gcaggagaca cagaaactac acactcgctg attagttttt agtccttaag
      481 aaatggatgt tttcattgtt attattatta acaacaaacg aggtttcgaa tcagagcaat
      541 tcctttcaaa attccactgt gaggaaaatt cattatcaga agctggacat atacctga
//
LOCUS       KCLA01000287             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4683upu ultra-conserved element locus uce-4736,
            sequence.
ACCESSION   KCLA01000287
VERSION     KCLA01000287.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4683upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-4736"
BASE COUNT          288 a          161 c          186 g          350 t
ORIGIN      
        1 tacaattttg tatcaggact tttcaagcat tcataacaca aaatataagt aaagactgta
       61 gcttttccag acaaagcttt gttccctcct tgaacttaag aacttagggt tagtttacag
      121 ttagtttaca cagtcctcct tctgatgcta ttgcattgtg cagtcactta gaggttctct
      181 ttagcacctc agagcattgg agtcacttgg tacttatctt aatgtttgat tttagcatat
      241 acattaaaga accgtgtctg tgcttagatg taactatata ggtgaaaagc aagtttatga
      301 aactgtcttt tattttcttc tccttttaga agccttgtgc tttaaaatct tgccgcagaa
      361 acacttagaa ggttattaca ggtagaattg tcagaaaaaa tggacattgt tgtttggtat
      421 taaaatcatg tattccagat gtgggcattt gttagtcagt ctgctctaaa atgacatact
      481 gttgaatctt taaagggctt cagtttggga aagcaaaata tgattgggca aattgctaaa
      541 atatttaaag tgcagcctgt taaagctttt actgtgaaga gcatcacgtc agaagttgta
      601 tgtggtaaaa gcaagtaatt ggctttccat acttatgcca gtcagtcagc atgtggctct
      661 gttcctatcc cttctacttc attgcagatg ctaatagcaa ctccagtatt tattttggag
      721 aggtgggact ggaaagaaag tatgtgtatg gatgtgatgg tgtcagaaat tcttatttaa
      781 aattcagtgg ttattggtgt agaaagagta tagaaaatct ttggaacgca tccaaaattc
      841 aaacattttt tcttttcagc tgttgtctaa aagtgcccat gttgaaagta tgttaaagtg
      901 taaatatttc atttttttac tgttctcccc cattgtacac agctcttggg atatctttcc
      961 atccataatt cataatattt tccac
//
LOCUS       KCLA01000288             905 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4697upu ultra-conserved element locus uce-620,
            sequence.
ACCESSION   KCLA01000288
VERSION     KCLA01000288.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>905
                     /note="ultra-conserved element locus uce-620"
BASE COUNT          254 a          168 c          205 g          278 t
ORIGIN      
        1 aagagttatg ggatttaatt aaactggctt tatctggtcc aaagttgcac gtaagctgtc
       61 ttccgtatcg atctctttgc tccttttccc ttgcaaaagt ttttctagac atgtgcatcc
      121 ctttcaggat ctacccacag acaactgaaa tctttccgac atgacccacg ttagtaattg
      181 caaaataata aacatgacaa gattcagatt aataggacat cctgtgcaac ttggatggtg
      241 gggagagccc tctggaattc taagcataat aggtctgtgt ttatttctca actgactgca
      301 taatgtgact gatttacaag agtttaactc aagtgttaat ctgacagtga cgaagagctt
      361 ctcagtggca gaatcactta cactatcata ttagttgcct cctctattaa agcagtatgg
      421 tcgataattg gaatgctttt atgtctagtg gttctgacaa ggctctcttt aggtcacata
      481 tgggcggtct ggcttgctgc acagctgaac agtggcaaat gatttaaact gagaaagtat
      541 tgttctccat gtattatgga gcaagggcag ttcaaggaaa gtaaggctct gcaccggcta
      601 cctgctggtg tgtagtaaaa taagatggac atgatactgg gttgggagta caattaaatc
      661 tattttgcat caatgtgttg gtggacagat gagtttccac atggcagagc tttatgatct
      721 ttaaggtaga ctgaactaat agatcggtgt ggagcgcact gaagttacta aggatgagaa
      781 agcaagcagc agtacatttg aactacaggt ttctcatatg ctccacgtca tgctgagttt
      841 ttatagctcc tgactttcaa aaagcctgtt tcaaagaggt ttgcgctaga ctgggcatgc
      901 agttt
//
LOCUS       KCLA01000289             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4712upu ultra-conserved element locus uce-3724,
            sequence.
ACCESSION   KCLA01000289
VERSION     KCLA01000289.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-3724"
BASE COUNT          143 a           92 c           93 g          131 t
ORIGIN      
        1 ttttttgggg atttctgtct ggaccttttt caggtacaaa tggtgctgtc acccagagct
       61 gcaagttaga aagttattac ttttaatatg cctctacctt aggcctctcc tgttatgtaa
      121 aagaaaaata accttgtgtg acagtttaac attgatcgat gtgcctgcca aatgcaaaga
      181 gataaataag caggtgatga ataaacagca cttcaagtaa agacattaca ccgcatgcat
      241 aaaatgacac caggcaccta ggagcggtgg gtggccgaag gttagccatt tcatgcccac
      301 tcggtaaagc agacttaatc gcttccaata ttttctgtta aaagcacgct taatgagcca
      361 atttcacaag cccagagaaa ctgattatta tctccgagtt ccaactgagt tggttgtttt
      421 ccaagagcca gtttttcctt gatgggataa aaaaaaaaa
//
LOCUS       KCLA01000290             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4728upu ultra-conserved element locus uce-2250,
            sequence.
ACCESSION   KCLA01000290
VERSION     KCLA01000290.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4728upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-2250"
BASE COUNT          124 a           79 c           91 g          112 t
ORIGIN      
        1 gcctcataaa atccgttatg cacaaaagtg cataaaatga agataaacta cctccttcag
       61 gtctgacaaa acccattccc ctgcagaacg ggagctgcag ggaaagtaaa taaatgaagg
      121 gacagcaatc agagcccggg tgatgaaact gttcaattaa agcagaggca tttacatgct
      181 gtaatttccc taaattgcca atgagcccct ttagacacaa ccagtgttca aattgatttc
      241 ggcattgatt ttggctgaag ctgataaatt tctgcttgtt agttaaagta attttgcaga
      301 agactttgca gggcggtatt gaagtgttca tttagctgat ggttaaaaga ggagttattt
      361 accgacggct ctgctgttgt tctgagatgg gacaattccc cgctca
//
LOCUS       KCLA01000291             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4743upu ultra-conserved element locus uce-1920,
            sequence.
ACCESSION   KCLA01000291
VERSION     KCLA01000291.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4743upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-1920"
BASE COUNT          200 a          147 c          149 g          271 t
ORIGIN      
        1 tactttcgtg tttcgagatg cagagttcac cctagagcgc tgaatttcca ttcatgagca
       61 tagtacatac ataattaatg caatctgctg tctgttatga ctagagatga cagaaatgta
      121 tgtgacagct accaaatatg tatatatttg gttgttgtgg atatggttgt taataggttt
      181 gactgtatct ggcatcgata atatgccacc agtgcggtga agttaaacct atcccacgtc
      241 ttccagtcct ggtgtgtggt agatcctgtt tgaatagctc ctttatgttc tttttcaaac
      301 caaacgtttt tatttttgtc aataaactgt gtcatttatt atagttaaga aaactcatgt
      361 tgtttgaggt ctttatcaga gttccgacaa atcaggttaa ttggtgatca acagagcttt
      421 tctgccttta atgaggcctg gtagcccaag gcaaggcccg gctcttgata agggactttc
      481 cctttcctta ttcaggactc tttgatcact ttttttttta ctgggagaac aaccgccggg
      541 aatgtcattg ttttttaatt gcctgattac caaatgttgg agataaaaga tagatgttct
      601 caattaataa catttacata gattagcatc actaacaagc ctcattagta gctgctgact
      661 tttgtttaga ctgcgtccca tgtcagttgt gctccgatag cgcactggga agcgccttcc
      721 ccgtattaaa atctatttct ttctaatcta tttccattaa tcaagct
//
LOCUS       KCLA01000292            1029 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4759upu ultra-conserved element locus uce-4076,
            sequence.
ACCESSION   KCLA01000292
VERSION     KCLA01000292.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4759upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1029
                     /note="ultra-conserved element locus uce-4076"
BASE COUNT          301 a          212 c          187 g          329 t
ORIGIN      
        1 ttcttttact ttgcatttca tctctctggt gtcatggaga tctccgcttt cacatggcac
       61 tttgctaatt accatatcct tatacagcct gcctgctgta gctgcctctc aagaagtgct
      121 tttccctctg atgagatact gattctgtaa cagagatcac aaacttcctc ctggtagctg
      181 ctattcaaga agaaaaaata caacatgcat ttgtttgctt ttaacatttt tcttcacaag
      241 tgttagcgtt gctacatctc tctggtgcta atcgttagta ttttggcaag aggaaaggcc
      301 tcaattcgaa gtgtgcagat tccccagcct ggctcctcca gtctctgcta atataaaaaa
      361 gcaagtggca gcagattgat tacacacaag ctcttgttat taagcagaag agaaaagaaa
      421 ggaatttcaa aatataatcc tctgttccca ggagtatttg tcttgttctc catgaagtta
      481 aaggtctgaa ataatgtgcc catcaggagc tcaatgttgc atgtccatgc cagttggtcc
      541 aagggcttgt tatgatggta atgacctgct gaaacgtgag ctttgatggc aacaatacaa
      601 ttgctaccag ctcacccgct gggagaaata ttttattatt gtcaaatgcc ctccgcagag
      661 atttgttttg cctgttcctg tttaaattaa attcagagca gaactgcatt attatttctc
      721 tagagtatat ttgaaataaa caactagtct ccaaatttag gattcctggt tagtttaaat
      781 tttcttatta gcagaaaaat tacaataggt gacaacatag ctgcaggaat attattatgg
      841 cagccatacc ggagatttac acactgagag cattgcctaa aagcacaaga actcccttct
      901 actttacaaa tgccagccaa attaataatt aactctgcca taaattctct ggccttcaag
      961 aatgatgtca atgctcttct gtgtcacacc agaggaattt tgtcataaga gtaagtgata
     1021 ttctttata
//
LOCUS       KCLA01000293            1030 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4774upu ultra-conserved element locus uce-3776,
            sequence.
ACCESSION   KCLA01000293
VERSION     KCLA01000293.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4774upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1030
                     /note="ultra-conserved element locus uce-3776"
BASE COUNT          321 a          243 c          200 g          266 t
ORIGIN      
        1 attagcagaa gccccaaacc catcacttgt taagtgtctg tacctgaaca gacgtggaga
       61 cagaaccaag tgtgcaacct ttacagcacc aaatagtggg caatgtcatg tgcaaggcag
      121 agccgactgg atggatggaa atgattttat agctacaaac aaaatactca caaatattaa
      181 ccaatgaact catgcccagg tggaaatgtc ctattataaa attactgtaa agatcctcaa
      241 actgttcagg gaaggaaaaa agtccaattt tccacataac ctgaaagtgc agagtttccc
      301 gataataaca tccaaggaac ctgtaaaccc aaggctctaa ttttcttatg gtgactgtgt
      361 aatattttgc aaagtaaaat tgactgagat ggaagctatt ttgcatggta cagtggcgat
      421 ggctaacaaa tgagagtttt gtgggctgaa tgttagtccc ctgcctcatc tgccacccct
      481 aatgacagca gccacctgct gttttattgt cacagctgga gccggttcac actccttggt
      541 gctgagctct gcccatgagc gccaagctct cgcctcgcct cattactttg atgaactttt
      601 tatggtcagc acccatgaag acctcatcta ggactataca acctagatcg gcttcaggga
      661 gtgcttccag ctagcatgag gtgataatac acagcgacac catggctgcc actgcctgtc
      721 acttagacaa gtcactgtat tatactcctg gctctacagg gccctcaaca ggtaaaatac
      781 catgaaattc tcctatataa taaagtacag tctccctttt tcatattgca atatggagac
      841 catatcctac tagcaacatt cctaggtatg aaaatggtac catgcggttt actatctgta
      901 actacagaca agaaatttct gccttccctg gctagaaacc tgctaccttc ctaaaaacat
      961 atccaggcat taaaggaagc aaccacaaaa attgtattac agcttggata acaccgccaa
     1021 ataggaaaga
//
LOCUS       KCLA01000294             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4789upu ultra-conserved element locus uce-5811,
            sequence.
ACCESSION   KCLA01000294
VERSION     KCLA01000294.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4789upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-5811"
BASE COUNT          132 a           61 c           86 g          151 t
ORIGIN      
        1 gtgttttatg ctattcgttg accttggtca tgtacacgtt tattactggt atgaaaaagt
       61 acaaggtaga gtgagtgaca ttcgtgatgc agggagaggt ttaacagggg aaaagcagtg
      121 tgaatggttt gtaaagtgtt ctaaaaataa gcaaaccctt ggtaaaagtt tgaggctagc
      181 ttgcattgat gtttacatga agcctgttac acataatttt ccaaagctgt tttcaatcat
      241 gcaaatgatt ttttcctttg caatatgcta atgcaatctg atttatttca gttgtaaaag
      301 ttaattacaa tgtgtttgtg agtccctaaa gatgatgtat taaatgttta taaccaggat
      361 tattaaaatg tcctgtctcg attacagtgc ttctctttca aacactagaa ctaattgtag
      421 ccttaaatca
//
LOCUS       KCLA01000295             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4803upu ultra-conserved element locus uce-154,
            sequence.
ACCESSION   KCLA01000295
VERSION     KCLA01000295.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-154"
BASE COUNT          170 a           75 c           84 g          235 t
ORIGIN      
        1 atacggagtt ctgaactgca acttgactaa gaagcccctg ggtacaacag gtcctattgt
       61 ggccttttct gttgtgagac ttgaactagt cgattttttt gaaggctaac ctaacctcga
      121 ctatttgttg ttatgtgcaa tactgtttgt actgtttgta taaaaaaaaa gaaaaatgaa
      181 aagaaaaaag gcataaatct ttattgcaga tttattttca ttgcagactt tagacattgt
      241 gattcactaa aatcattttt ctactgtcaa atatgtacct tttcttcatg ctggtatttt
      301 ttcaatagta atgtagcctt tgtactgaga caaattttca ttgttatttt tagaaagatt
      361 ttttgctaag aaaaaaatta aacatattta catatttttc atttttattt cgtattttct
      421 ttaaggagtg ctttctcaac cattaatata gttgtttctg ggagagactt tcatatctgg
      481 tcaatgtcat taatattatt ttgtattttt acttggaata aattaatttt atgatgctaa
      541 ttctttaaaa gtttattttt ttca
//
LOCUS       KCLA01000296            1009 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4819upu ultra-conserved element locus uce-3387,
            sequence.
ACCESSION   KCLA01000296
VERSION     KCLA01000296.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1009
                     /note="ultra-conserved element locus uce-3387"
BASE COUNT          312 a          201 c          169 g          327 t
ORIGIN      
        1 gcaaatcaac gccagagatg ctgtatggca catttttatt gagacaattc tatacatgtc
       61 tgaaaaatga acttgtaata agctcatatc ctatggaggt atgtttttcc ttccatctta
      121 tgaaataatt atgccagcaa aacataacat tttcctaaat gccttataaa ctgacccagt
      181 tactcagaaa gtattatttt taaattgatg tgatagatgc aaacttgaac gttcagattt
      241 caattctggc accaattccc ggatcccctt cccaagtaat ttgaggactt cctcccgata
      301 gtttttcata ttcttttaac tgacatttta tctttataca gtatctcagc agaatgaaca
      361 tgcactaaaa caatgacagc tcttctttgg ctgtcatctc tcattctggc aaagacagat
      421 gtcttacact ggcttatgcc aataatagag ccgacaaaaa acaacagaga ctacctgcct
      481 ctgatgtaaa ggcaccaatt cacatttgtg acactcattt gtcaattaac agatttcttc
      541 cattgttgac acatgggact taaaagatgt gggctagaat gtgatgaatt aaaaaagaca
      601 gatgagtaag ctatgagctg caaagtaata ctataatgtg ctttagatag gaatatcaac
      661 tgacacccct gacaggccat acaaggtttt atttcatttt gctctgtatc taggcttcat
      721 actttgtctt ctttgttctc ttttcatcaa gctcctaaca tctcattctg acagccagag
      781 acatttaagg cactttcgtt tcaaatgcaa gttagcgtac ttgatttgtc attaaaatgc
      841 aaaacgattg ccattgcagg taaatgtagg tatgcttaaa aggttgtatc tgcaaagtaa
      901 aagctgaaaa tgtgttctgg ctgctttgct taactctttc actagcctca gtttttctaa
      961 gaaagtgtta ctgggctcta acagaaacgt agcaacacct gcagtttta
//
LOCUS       KCLA01000297             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4835upu ultra-conserved element locus uce-3631,
            sequence.
ACCESSION   KCLA01000297
VERSION     KCLA01000297.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4835upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-3631"
BASE COUNT          221 a          143 c          119 g          212 t
ORIGIN      
        1 gttccccaga gaaaaaatgg tatttctgcc atgtctgaaa agaactaagt acagtctgaa
       61 agctgaccag agggaactga gtaacagcta aaaaaagaaa caaacccaaa aaccaaacaa
      121 ctactacttt ctgtagtgaa tacagagctc ttccctcatg aagcaattcc cttcctaagt
      181 cactgactgg agggagaggc aaaaatcctc actgacttag tggttgtgtc tcacctcatt
      241 tcgttttctt tttttttccc tttccaaaca gactgagtgt tggtcagctg agaatatgaa
      301 gctaagccac ttttcctgta gagtttttaa actgggcctc tgagaaatgg tttgatacaa
      361 ttcaatgact gaagtaatac ctttgtccat ctgagcatta aatggcccaa tgaaatacag
      421 cttagttaga aagaatttca gtaaagtgag ctctctaatt tttttattat tactattatt
      481 cctttcccaa tagattacca cctggatctg aaactgcagc tcaatcactt ttggttgtct
      541 cataggttag gtctttagcc actgttaatt aaatataccc cctttagaat actggaggtt
      601 aaacaagagc aacaatcttc aagatattac ctcatgctct ccaaaaagct gtaatctgtt
      661 tggaaggacc ctcattttaa cacattagta aaatg
//
LOCUS       KCLA01000298             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4851upu ultra-conserved element locus uce-2226,
            sequence.
ACCESSION   KCLA01000298
VERSION     KCLA01000298.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4851upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-2226"
BASE COUNT          201 a          277 c          206 g          194 t
ORIGIN      
        1 gccatcccag acgcgttttc ccctagcaac tgagtggaag gaactttgag tggaagaaac
       61 cagccccatc tgcttcccgg ctgtggaggg agcagggttt gtaggtgcct gtcttcccat
      121 ccacacagaa atctctaccg cagcccacgg cgccggacag cctctcagaa aaagcaggtc
      181 cccatctcta gcacctcagg actgcagtcg gtttccctct ttcgcacatc caagagcgac
      241 tctacctctg tggagaaggt atccgggcgt taagggcctc tgggttcggc attgttttta
      301 attggtatgt ttgcgatcag caagaagaga aactgtgaca aggcaaaaca ttagtgctcc
      361 tactgagacc tctactaacc tctcttcctg agagcacctc tactaaacac cctggagcaa
      421 agtctaggat cacttacatt ccagcaactc tcactgggaa ttatccaatt aaagcagcaa
      481 ttcccccacc cccttttccc tcgcaggtct aaacacacaa caaaacgcac tgcaaaaccc
      541 agccactccg cgtttcaaga accccggcgc ctcggcgaag aaaataacgg gagatcaaac
      601 cacgctgagc cgttcacggc cccggcagtc acgcggcctg ctttcgtttc ccgttttttc
      661 tcctccggac agacgggatg atggaaaggc ctctgcgcac agagctctgc tcctctctgt
      721 gaaacagccg gccggcctcg cggctcccgc cggtttgaat caatcactgc ttttcgctgc
      781 tgggctcccc cccggatctt ccgatgctga aggtgaagag ttcgccgagg ttcacttccg
      841 agtagccgct catggacaga cacttgtcta cggtgctc
//
LOCUS       KCLA01000299             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4867upu ultra-conserved element locus uce-6033,
            sequence.
ACCESSION   KCLA01000299
VERSION     KCLA01000299.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4867upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-6033"
BASE COUNT          113 a          106 c           90 g          108 t
ORIGIN      
        1 gccggccccg cggagccaga ggctctgccc gccagcgcac gggaagataa atgtccaccg
       61 cccagcctgg atttaagcag gagaaggcca ataaaaggtt gttatttccg ctcgcccgct
      121 ttatctaaaa cagccagaca aaacaaatga aaaggctttt gtagaaaatc ttaattgtgg
      181 ctggacagtt gtaaactcat taagagccga attccagaca gtttgcagac ccgtcattta
      241 ttacacactc ttaatgctga ttctttgaag ttgcctctgt ctgcaacaac agagggcgtc
      301 ccagcatccc caaataccgg ctcaaggatc aattaggggt tttttgtgtg tgcacaccag
      361 aatgcgttct cttttgctaa ttaggactca ccaaatttta ccccggattt cttctta
//
LOCUS       KCLA01000300             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4883upu ultra-conserved element locus uce-205,
            sequence.
ACCESSION   KCLA01000300
VERSION     KCLA01000300.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4883upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-205"
BASE COUNT          253 a          156 c          173 g          293 t
ORIGIN      
        1 gtttctttcc cctgtattga tcatcttcct gctgaggttc agccaagtct ccaaaacaaa
       61 caaaaaagtt gctgcttcct ctgtcaaatc tactctctca ctccacagcc caaagtgact
      121 tctgtgtgcg tgaggaattc ctgagaatct ccataaaagt tccattttcc ctttgatgcg
      181 tgggggttgg aaagggacgg gagtgtgtga ccattcatca cagctctggg ctcattagta
      241 cccaggaact ttcttctcta aatgacaaag agtttcactg tcgccaaaga gaaattgctg
      301 ctgaccttag acctcttttt ggaaagtaaa ataatggtgc acaggagcag agtttgagat
      361 ttgaccgaat tctacacaat tatcatgcat gtgtatataa taaaattaat tctgtgtctc
      421 tgcgttgtag cccggggcaa gcggcgtaca atcagttttg tatgtataat agatcacagc
      481 gttgttcatg aataatacaa atgcattgag cagatactag tgagtgagga tgtttgtctt
      541 tgcatggaat cgaagtgaat atgtaatatt gtgataatat atatttgatg aattcaggtc
      601 tgacttgcct ttgccatagc ctgctaattc cccgacaagg gttgccacaa taattgagtt
      661 tccaataaca ttatgattat tttcacacga taatttaatt gtaggtattt ttttaatatt
      721 gtaataatgt agatgtgtga ttattatgca tttgcatgca gatttttgtg gtgacttgaa
      781 gcacatccct acatttataa cttaatttcc tatattattg catatatatt ttgggatgag
      841 ctcattaatg caaactaaaa aaaaaggagg tcttt
//
LOCUS       KCLA01000301             904 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4897upu ultra-conserved element locus uce-2981,
            sequence.
ACCESSION   KCLA01000301
VERSION     KCLA01000301.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 904)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 904)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4897upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>904
                     /note="ultra-conserved element locus uce-2981"
BASE COUNT          234 a          214 c          222 g          234 t
ORIGIN      
        1 ctgcttggca gcctgcaagc gttttgtgga ggtgctatta ccctcctcac cagcagggag
       61 actgtggggc atgcaaacct tccctcactg cctgtgtgct gacagtctgt cttcctggtg
      121 atgactgcca gtaccaacca tgcaaggact tctgcttgaa ttctttgtac cccttctcct
      181 tgagtaaaat cagcctgagc aggaagccca tggtttgtgg gagagggatg tgtctggatc
      241 tccccctccc tgtggaggag ccgctgtggt accctgggat gcagccctca aaacccttga
      301 ggtgctgttc actcccctgc ctgctcctga cattccaggc taattcttaa aatatagacc
      361 tcatatttta tttctgcatt tattacaaat gcaaattaca gatgaaagca tcaactacac
      421 aaaccattac tcagaggagc atctttccaa ctgctggact tggactgaac agcttgtggt
      481 taatttgcta tataatcact gcctgcaaca ggaaagcaag tgcttcaact gtgctaatat
      541 tatgaaaggg gaagttaacc atagagataa atcctgagga gctgcagctg ggatgaaaga
      601 aggaaataaa tgtagctgga gtccaagctt caggcttgca aaagtggccg cttggatatt
      661 tgaagggata aaagataaga gttcaggtta aacagtagtg gtttgaagtt gctttcagcc
      721 tgaggatgcc ccccccagaa gcagagaatc cctgcagctc gcactgacct gtggttggag
      781 cagcaacctg gactgtacca gccatgcaaa tgtaataaac tgctcaggtc tttgccagaa
      841 gccaaggaga gtccattcct gtgctgttac cagaagcgtc cttgctgctc agtgttgtag
      901 gaag
//
LOCUS       KCLA01000302             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4911upu ultra-conserved element locus uce-1215,
            sequence.
ACCESSION   KCLA01000302
VERSION     KCLA01000302.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4911upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-1215"
BASE COUNT          231 a          143 c          149 g          196 t
ORIGIN      
        1 catcatatta atcagatgaa ccaggtctat tatgtcctct cttctgtatt tgaaacgctt
       61 cagcaataca caacagatag atgaatctta aaagcaggag agtagaaaag gcaaacaacc
      121 ggtgtttatg gtgcctaaaa tggaaaggcc tgagtgtact cgtatacaaa caaaattaga
      181 agttgctgtt ctgaaaaaga aatgcttgaa aaacaccatg gtttaaggct ttacagaaca
      241 tatcattgta ctcggtgtag gaggtgaaga caagaggcaa tttattctgc agctggttta
      301 gaaataaaca cagcaacgga agataaggag tgaaagaggg ataaatcctc ctgtagcaaa
      361 cttgatggac agacaggctg ccattaacaa tgctgttgcc tttgtaagta cagagtgatg
      421 tggagatacc ctggcattta tactgtagac atggtcctta aagattttac acctccaatt
      481 ccttagaatt atcagctatc tccagcctgt cactcatcct ggcaatctta gatttctagc
      541 ttgcaggcca ggcagattat tgacaaagca atccagggtg atataataca ccctgacaaa
      601 caacagtgag ggggattgtg tttaccactt tcactgcacc aattcggcta aattaattct
      661 taacactgga agtaaacttt ctcttgataa gcggtcgctc ccctcccgct attgtttcg
//
LOCUS       KCLA01000303            1100 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4927upu ultra-conserved element locus uce-6690,
            sequence.
ACCESSION   KCLA01000303
VERSION     KCLA01000303.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4927upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1100
                     /note="ultra-conserved element locus uce-6690"
BASE COUNT          266 a          285 c          268 g          281 t
ORIGIN      
        1 acatgcctcg cagcacaggg ttttggaata gctcagcacc atctgtgtgg agacaaatgc
       61 ctgctccggg gtgtagtgcc ctggtccagg ctagtcgtga gtattctgcg tgccatgtgc
      121 tcacatgcag atagctgagg tatttgctgc aggattggga aacgatttta aaacttctgt
      181 gagcagtaac tgtcagaagg ggttgttagt acccataggt aatgggtgtt ggcaaagtaa
      241 gttgctctgt ctgtaggctt atgtgatgtt attgtctgtt ctcatcaccc ttctcttctt
      301 cgcattcccc cttccctttt tcttttgcag ggtgatcttg agttcttctt gacttgctag
      361 tgctcagcct cctcatgcct ccgtctcctt tagacgacag ggtagtagtg gcactttcga
      421 ggccagtgag acctcaagat ctcaaccttt gtttagactc tagctatctt gactctgcct
      481 cttctgcttg tgagagccac tccagtctgc tcggtgcagc tgttgtgtcc ctaaagactg
      541 ctaatctcac gtatatgccc tcatctaacg gctctgcacg ctccctgagt tgtggatgca
      601 gcagtgccag ttgctgcact gtagcaacgt acgacaaaga cactcagacc caaactcaag
      661 cgagcaccag cagccccacg ccggagcctc tactgcctgt cctgcaaacc aaatggtcaa
      721 cagcaatgag aatgctggca gcttgagccc gctgggtgga gtgggaagcc cagtctcggg
      781 cactaccaag caactcgcta gcatcaaaat catttacccc aatgatctgg cgaagaagat
      841 gaccaaatgc agcaagagcc accaacagaa ccaagggcct gtcatcattg actgcaggcc
      901 attcatggag tataataaga gccacattca aggggctgtc cacataaact gttctgacaa
      961 gattagccgc agaaggctcc agcagggcaa gatcactgtc ttggacctga tctcctgtcg
     1021 ggaaggcaag gactccttca agaggatctt ttccaaagaa atcatagttt atgatgagaa
     1081 taccaatgag ccaagcagag
//
LOCUS       KCLA01000304             930 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4943upu ultra-conserved element locus uce-2963,
            sequence.
ACCESSION   KCLA01000304
VERSION     KCLA01000304.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4943upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>930
                     /note="ultra-conserved element locus uce-2963"
BASE COUNT          175 a          256 c          282 g          217 t
ORIGIN      
        1 atggatggca gtgttaatgg agggaatgtt aattgcgaga tcagctttaa atgaactttc
       61 tttcccccga attaatttcc tggcgcgttt cgacacgtcc tcgggtctgg accttccctc
      121 tccgcgttca tttccaagcg tgtcagcttg gaatgagatt taggggccag caggcgttcc
      181 ttcaattagc ggcctccgct ttccctcctg cccatcgtcg tttcccgggg ccggcagccg
      241 cctgtcctag aagagtcttt ggaagataaa gtgggtgttt ctgctggaaa gggtttgggg
      301 gctcggtgag ggcagggcag agtaatttgg cacctccgtg cgatccgggg aggctcgggg
      361 agtttgccag tggccggagg agcgagcgaa agagcggctg cgggattacc gtgacggtga
      421 agtatgggaa gccgtatttc atcgctctga acaaatggtg tttatacagg gaccttggca
      481 gtgagaaaac agtcattaaa caggaattaa ggagcttgtc atcgccactc ctttgcagtt
      541 acagaaggaa aaacccctcc cagccgcttt tattgggccc ctgtgaattt tgcagtcggc
      601 ccggccagat ggagccgagc ggaggaatgg agtgggtttt tgtgttcccc ctcccctacg
      661 tgaggcggct cagcttacac cgcaggcacg ttccgagggc ctgcgccgct ctccgtgcgg
      721 gagatgaatg ccccttgctg atgtctgctc tgtctccccg caggtgaccc cgcgcaagaa
      781 gttcaagtgt ccggaatgca ctgccatcga cgggctgtcg ctcgaccaga cgcacatggt
      841 ggaacggtga gtgaccgccc tccgctcctc ctgccgcccc gttcccatcc ctagggccct
      901 gccctgtgcc cggctaaatc agggtgggca
//
LOCUS       KCLA01000305             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4958upu ultra-conserved element locus uce-1305,
            sequence.
ACCESSION   KCLA01000305
VERSION     KCLA01000305.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4958upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-1305"
BASE COUNT          181 a          138 c          129 g          200 t
ORIGIN      
        1 ccccccccaa tgtgtaggag caaacaatct acctcacaat gtttagtata gcagagtttg
       61 atgcagccac ggttgaggtc aagcactcca atttgaacct ctcaagggct ttctctgtgt
      121 gttgccagtg tactggtaaa aatgacttta aactcttgtc agcgcagtta ctggtgcatg
      181 catcacagtc ccactcaaat aaacctgtca caacacagag tcagcagcta gagaagagta
      241 caagggcagg cctctagctt tttatttgag catcactaaa cgtgcacaga gtgcccaatt
      301 atttcagcat tattgagcaa gcctacagga ggacccaagc cttgctacat tagattttct
      361 ttagtaattt gctcaagtac cgctgaggac acttagaggg cttaaaaggg tggctgcaac
      421 cagtttcctt ttctggattg ttaattcagg ttttctcttt caaattaact ctcactgcat
      481 gctgtgcggt agcaccagga gaactgttta acactaatat tctcaatttt cagctttttt
      541 tttcattatg taactgcttt tatagttaga tatgttttga ttagatgtga acatggtgtg
      601 tttctgctag aaagcatgaa acttaatacc tctatcagag aaactaga
//
LOCUS       KCLA01000306             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4973upu ultra-conserved element locus uce-4115,
            sequence.
ACCESSION   KCLA01000306
VERSION     KCLA01000306.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4973upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-4115"
BASE COUNT          197 a          114 c          161 g          256 t
ORIGIN      
        1 agttcagtaa gatttatagc actaataatg tggctttctc acattaacag gaccgctcat
       61 tttatgtgta attagtatgt ttttaagggg ggggtctctt ttgcagctct gtgctgggtc
      121 tggcactgtg agtttatcct ggaatctata tagattcagt gatatatgtt taaattcctg
      181 cacttcttag gggtaaataa atatatgaaa ataagctatg ggttgtatag tccagtgtaa
      241 caatgataaa tgatgttgtg tgtaattttt ctactattaa cataaagtaa tataaactga
      301 aggacactag tctattgaga gagttagtag ctaatgttcc atatcagatg tggacaatgt
      361 caggactgaa tacagattag gcagtgtcct tttctcccca ggggaattaa acttggagac
      421 accactggct gccaatggtt ttactgcgtt ttgttggtgc ctgtggtgcc tttcttggtc
      481 tattaattca gaagctgtaa atgacaatgt gagcgtttcc agtgggatgc atttcattta
      541 tggatccttg tagctacgat accttctcaa gccgtttggt cacaatctgt tttaaaaaaa
      601 atgggtagac tatccgtact tttgcatgaa ccttaatgag gttgtttttg ttttctttat
      661 ggcagaaata tttgagagac ttagaatgat ctggaaactt gaattgaagg ggatcttccc
      721 tgctccct
//
LOCUS       KCLA01000307            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 4988upu ultra-conserved element locus uce-2122,
            sequence.
ACCESSION   KCLA01000307
VERSION     KCLA01000307.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="4988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-2122"
BASE COUNT          311 a          166 c          207 g          331 t
ORIGIN      
        1 ataatggaca ggttttcata atgaactggg caaaagctat tatgaccaaa aaacaaattg
       61 ttaggaagct tacgtgttga agcaatatgc tcattaattg taattttttg gggagggtga
      121 gcaattctgt ttaatggtta cattttccag tcttataaat taatgtgaat tacccaatat
      181 cacttaattt ttccctagga aagcttctgc ttgcctgagc aatattataa ctgctaattc
      241 aattacaccg aaattgttta atagaaaata taattgctta ttcatacaga atacccatta
      301 aagaagtgca aaggcctata cccgagggtt actacatatt agtactttgg gaattcagat
      361 gggaatgctg ggtagggaag gtgctgactg atctttaatt gttcatcacc tgcctccaaa
      421 ataatatgaa tggacccaaa ctaaatgacc actcattaca agtttcaatt taggagctcg
      481 gctggggtca gcagattgct tatgctgatc ggaatgattt gaagttgtga ttaccataag
      541 caatttaaat tttattgatc gacccttctg aaagttgtaa ttgagcatag atgttggact
      601 cgtagctctc caaactaaat tgtactctga agcccttgct ggattactgc aagaatcaat
      661 aagcagtcag tcacattaac aatgaaatag ctccattaac atacagtgct accggtgaaa
      721 ctttatttag gaagggtgtt agttcacttc attgttttat caatgaattt cagttgtgca
      781 ggggaaagta tagcttgtgt gcgcctaatg agcttgcata atgataagct tatattcttt
      841 aactgtaagt ctttttatgg gaaggaaaga ttagtctctt tcagtgacag atttgcttta
      901 ttatgagcag aggagctatg tagcaggaat tacaatttgt tgactgtgat gcactgaaac
      961 ttgagcacca gagtcttcta ctgtgacctg tgttcactgt cagtgggttt cagac
//
LOCUS       KCLA01000308             210 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5002upu ultra-conserved element locus uce-3449,
            sequence.
ACCESSION   KCLA01000308
VERSION     KCLA01000308.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 210)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 210)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..210
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5002upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>210
                     /note="ultra-conserved element locus uce-3449"
BASE COUNT           57 a           28 c           52 g           73 t
ORIGIN      
        1 ctttgtcatt gtggtcttca gatttgtgct tcttggagga cttctctttg gattcatgtc
       61 ttcttgcctg ttttaagaag aagttggttc tttcaggaaa atagtgcaac aaagagagtt
      121 agtatgggta tcagaagata aaaaatgata agttgtgatg caacattagt aaccttagga
      181 gtgcgactca atcatgagtg gtgggtactt
//
LOCUS       KCLA01000309             929 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5018upu ultra-conserved element locus uce-1333,
            sequence.
ACCESSION   KCLA01000309
VERSION     KCLA01000309.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5018upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>929
                     /note="ultra-conserved element locus uce-1333"
BASE COUNT          218 a          231 c          174 g          306 t
ORIGIN      
        1 taaacgagaa gggaaaaatg tttatctcgg ggaaaggttt aagattcgtg gggaactatg
       61 gctttctata tatagtcctt catttaacag ctccacaaac ctgcagaagt tggttcttgt
      121 tgcaaactgc caggctacat acaatgaaat ctggagtcgt aataccagag agctgtcagt
      181 cagacatcca tccatctaat tggctccttc ccatctttcc atcatgtttt ttttataact
      241 ggtcgcctct ggctaaaatg caaatgatga ggaagagccg tctcgaaaaa gctgctgctt
      301 tcttaattat ctgtcagagc gcggaccagc ggaccccgga ccgccgcgcg gagttatgct
      361 aagcagcgag gcatcacggg aattgcagtg acagctcatt ttcctcccgt gtttttccgt
      421 tttcgaatga caatgcagaa atacgggttt ttcccacact ttctctgaac acctgggcca
      481 atgctcaggg gaacacagag cccaaactgt cacatttcca gacatggtct tattgctgtc
      541 actgtgacag gattgttgac aaatgccagc agtcatctca gcatcttggg aaatgtctgc
      601 cgtggttgtg tcaacagcct gacagaaatt gttaatgttt aaacttcttc cgctgacaga
      661 atcctgtctt gctgacagta tttgtcagat gaaactcaat ctttgtcaaa cttgcttaaa
      721 aattaacact ttctccattt cttttgcaga taactgcctg tgtgcttttt ttcatcttct
      781 tctccttctc cttctccttc ttgtccttct ccttttcctt ttccttctcc tcctcctcct
      841 tcttcttctt cttcttctcc tccttcttct attcttattc ttattcttca atgctaagat
      901 ttcatagaat catgagtgac tggacaggc
//
LOCUS       KCLA01000310             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5033upu ultra-conserved element locus uce-7621,
            sequence.
ACCESSION   KCLA01000310
VERSION     KCLA01000310.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-7621"
BASE COUNT          197 a          151 c          136 g          195 t
ORIGIN      
        1 tctacgccta tttaaaatta ctcccactgt atagtaagat caggtaaatt aggagtctgc
       61 tcttgttcta gcactgaatg attattgtga tttctctttc tccaataggc aattgtagat
      121 tttaaattaa cagaaggtga aattctattt gtcatcaatt tcttctaggg gttacagagc
      181 agaaaactgc agacaagctg cttctttgat ggctcactcc taaaaatctc tttttgttct
      241 ttatctattt gaactgacag tgatcagagc tacagcagga cagacctctc tggagaaatc
      301 accttcccct tgtctattga cagattcccc tgttctgaat cagacagacc ttgtcccatc
      361 ataggcatca aggccatgga agtaaccacc aattaaacct cttgagccag taaaatctga
      421 agccactttt gagtgtctgt tctgattagg caggatgaga caaagcccat caccccctca
      481 gagcagctcc ctggtctcaa ttttctctct tgcttttacc aggtgcgaga ggtgtgagag
      541 gagcttcaca caagccaccc agctgagtcg acaccagagg atgcccaatg agtgcaagcc
      601 aataacagag agtacagaat caattgaagt ggattaactg attgactggt tggaattaaa
      661 ctgcaaggaa agtcatgat
//
LOCUS       KCLA01000311             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5048upu ultra-conserved element locus uce-5198,
            sequence.
ACCESSION   KCLA01000311
VERSION     KCLA01000311.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5048upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-5198"
BASE COUNT          252 a          155 c          120 g          290 t
ORIGIN      
        1 actgttcata aaaaccatgc atcatttgtc ttccatgtgc ttcttgtggc tttctcagca
       61 accaacaaga agtacaatgt atttctcagg tgtgtcaagt ttttaaagac aaatcatttg
      121 caaaaattct gtagacattt attacatcca actcagagaa gcttgtttag accatttaga
      181 ttaggttatt tcattttgag aatatttaaa ctacaatagc agcttttttt tcctgctttc
      241 atgttggtgg aatgctacag gtagtgttca tattttttgt gtttgtccta attgtaaaat
      301 atttcattat tcaaaagcta acatgctgca ccttgtcctg tccttacccc tattagatac
      361 aaaaccagat tcctggagct atatttccct ttgtgtttta tcctattaaa cctccaaagt
      421 ccatcacctt ggattcaggt ttgttattct agtttaactt aatccttgct tctaaaatta
      481 cggtataaat tggtgtgtta aagttaacca cattgttttt aacaaatgaa gtctgtataa
      541 gcttacagac tacatatagc acaaatacta atgctagaga taccaaagca gttttcccta
      601 caaagatgaa aaccattaaa cagttaacag aagaaaacaa agtgtatttc atccatcaat
      661 atcataatgc ttcagcatac cttttttaca tgttacttca gtgctcttgg agagcacaat
      721 gtgaaagtaa tgtttggata aaaactttgc aactgccaaa agccagtttt atcagacttg
      781 ccctcttcag tcatgtgatt tttcctgctg tcacaaa
//
LOCUS       KCLA01000312             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5063upu ultra-conserved element locus uce-7734,
            sequence.
ACCESSION   KCLA01000312
VERSION     KCLA01000312.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-7734"
BASE COUNT          189 a          104 c          151 g          206 t
ORIGIN      
        1 ttactgccct ctgccagggg gtgagatgtt tttttgaatg gagtacagct agatgtgcat
       61 caaagagtat ctgttgggtt gtcaattcag gttggttaac tgggtttaag aatgtgacgc
      121 aaacaagtga ccaggttata atgtgagtaa aaggctgatt ataagtatta atactctttt
      181 atcctcttca gggtaaaggc actaccccac ttgctccacc accaaagcct attcgcagaa
      241 ggttaaaatc agaagatgag ctaagacctg aagctgagga acatacacag aaaacaggtg
      301 tcatagctgc tgttcttgct tcacagccat ctattcctag gtaacccaag aagtgtataa
      361 atacatctgt tactgagaag tttacattta aacagcatat atgctttctg ttccaggggt
      421 tgcaaactgt ctcagtgtat ttgaattaga ttagtgtagc attttaaagt tcttaaacaa
      481 gatcatcttg aagcttttag tgctgggagg ccttttggag atcatgaagt ttggagtgtg
      541 aactctctaa cttctgcaag tttgttggaa ataggtggtg gaagtattaa gatgtaatat
      601 gtaattgtga atgatggttg cttgtgtcct agtatgaaag cattggttac
//
LOCUS       KCLA01000313             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5078upu ultra-conserved element locus uce-1068,
            sequence.
ACCESSION   KCLA01000313
VERSION     KCLA01000313.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5078upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-1068"
BASE COUNT          174 a           73 c           84 g          150 t
ORIGIN      
        1 tatacaatct agcaagagtc ctatgaaaac ataatgactt atttctcata acataatgaa
       61 gaaatgtagg aaaaatacat aggaggaaaa gaattgttcc ttttcttttt gaaatatctt
      121 gaaaaacact ttataaaggc acactaaaaa aaaagtaatt ggaagaaaaa ttctgcttgt
      181 ctaagcaaag agcacatttg tagcagtagg gtaaatgttt tatcgattgg gaaactggga
      241 aactcaagtc attactcacc atgggctaga gaataattgc taatgctctg gcagaaagat
      301 taaaaacagt ttctggaagt atttcttaca atgatcaatg gtgtatcatt ccaggccatt
      361 ggatcttcaa taacattttt cccttttggg atgcaatcaa tttttataat atgattcatt
      421 tgccagcagg catgctttct tcacgatgaa aaggcactta tgcaccttat attgttgaaa
      481 a
//
LOCUS       KCLA01000314             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5094upu ultra-conserved element locus uce-1064,
            sequence.
ACCESSION   KCLA01000314
VERSION     KCLA01000314.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5094upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-1064"
BASE COUNT          170 a          102 c          127 g          161 t
ORIGIN      
        1 ctttatgtac ttagtctggt agaatgtgtt ggaggcggga aaaagagcaa gctcttgtaa
       61 actcctataa agtacagaga acttctactt tccctccttt ctaagaagtg taaactattg
      121 aggttaagta ggtggggcaa ccggaagtaa ttactaaggc cagtggcatt tctgcggttt
      181 aataaaggca gaagctaatt attccatttt tatttaagtg aaatgatgcc agaaaggagg
      241 ttcctgcaga gcagctgcac tccttcagtg ttaccctaat ttaccacaga cacaactgtc
      301 acaaacagaa cttttaaact tgatatatag ccacgaaagt aaggagccct ttgtctggag
      361 tgcatgcaga agaactcctt tatacaaatc aaccgacaga tgacggacaa tgatgaaaat
      421 ttgattcttt gaagtcataa tggtcattga aatgtgtgaa attctggtat tgaaaagaga
      481 gcggctagca agactctgaa tcctgggtgg ttgctggaag cttgctggga ggtttttctc
      541 tgttttgaca ccaacttccc
//
LOCUS       KCLA01000315             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5110upu ultra-conserved element locus uce-5033,
            sequence.
ACCESSION   KCLA01000315
VERSION     KCLA01000315.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5110upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-5033"
BASE COUNT          139 a          152 c          188 g          218 t
ORIGIN      
        1 taggagtgat gctgggggat cctgcacatg cagtcatgta gccagtttgt gcaggggtct
       61 gggtctgaca ctccctcaat gcagaccttg tgtgtagggt tcctgcagga tttatgtgga
      121 ggagtgctag gcagagattc tttgtgccgc tgcttgcttt tgttggtctg ctggagacag
      181 gggcaggtca cagagtgcag gttccagccc acggcaacgg cagtggcagc cgtgggatac
      241 ttgaggcacc tcgttgtttc agaaaggtag ggtcccgaag tgctgcgact aggaaggtgc
      301 aggcactgag tgagaggctg ctgaagaagt tgaagcctct ttttctgtct ctccctcttc
      361 ttttctttcc cctccatctc tgcctgcccc ccctcctgcc agccctttgt cgacacttga
      421 tcatttacat caagttgaca ttcgcagagt ttactcaggg gtctgtaatt gtattctttc
      481 accggttctg cattaccaac catgaaaatg gaatcttatc atccctgacc aatttttaat
      541 gtacaaaatg atttggccga ggttcaaagg gagtcacaat tgaaatcagg tgaatgatac
      601 atgtaggttt ttttcagttt cttcgtgcct tgatttgatt ttctcgtatg gcatacaggg
      661 aagtgtagct tctttttgtg tgtgtgtgtg tgtgtgt
//
LOCUS       KCLA01000316             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5125upu ultra-conserved element locus uce-2438,
            sequence.
ACCESSION   KCLA01000316
VERSION     KCLA01000316.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5125upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-2438"
BASE COUNT          138 a           85 c          118 g          137 t
ORIGIN      
        1 aaatgtcata aaacgtgttt ctgcttgcag gtcgttttgc cgtgcgtgac atgaggcaga
       61 cagtggctgt tggtgtcatc aaggcagttg acaagaaggc tggtggagcc ggcaaggtca
      121 caaagtctgc ccagaaggcc cagaaggcta aatgaaaatt ctgtacgtca gctgccacct
      181 cagtcctaag cagtggtgga agaacggtct cagagctgtt tgtctcaatt ggccatttaa
      241 gtttaatagt aaaagactgg ttaatggtta caatgcatcg taaaagcttc aggaggaaag
      301 caatgtttgt ggaccatttg tttcgtggca gtttaagtta ttagtcttca aaaatcgata
      361 acatttttta aaatgaaacc tgaccaaaac aaatctgtca cagaatttga gaccattaaa
      421 gcaaaagttc aatgctttgt ctctgtgttc tttgcgttaa gttcttggtg ggagctga
//
LOCUS       KCLA01000317             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5141upu ultra-conserved element locus uce-4806,
            sequence.
ACCESSION   KCLA01000317
VERSION     KCLA01000317.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5141upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-4806"
BASE COUNT          181 a          149 c          251 g          169 t
ORIGIN      
        1 cgggcgcgtt tgctcagggc atcttcgcca ggcagagagg cagcagtcac ggtggcctct
       61 gaggtagcag cgttcagctt gtcgaagctg atcttgcggg ccagctcatc ccgcatgttc
      121 tggtcatcgt agccgaacat gccaaggaac tcgttcatgg tggtggcggc gtaatcccgc
      181 agcgatgaag cttcccctgc ggagaaccag agccagagag cgttgatttt tcttctcctc
      241 ccataccggc gctaggaggg ggagggggga gtcaggggag aggggaacat gatctactga
      301 cgtttggctc acttgttagg ttttacgact cttaaattaa tttgtttaaa aaaaaaaggt
      361 aattaatact ggggtaaaat aaaaagagtt catcaatgcc aggaaaatca atttcctaaa
      421 tgttctagcc gatggctttt cagtacatta aacaaagttt cataaatgtc tctgcactct
      481 tgccttggcc taatatgaag aaaaagtcat tttactggaa gtgagaccga cgccaaggcg
      541 ctggcgcttg gacgggtctg tcctggggtg ggtgtgggtg tgcggatggc aggagggacg
      601 gcggtgtgtc agggtggcag gagcacgtga gatgtgctgg agcacagcgg ggcttcagcg
      661 cggtgtgcga tggggcaagg caatgtgtgg ggtgaggcgg gaagagggca gagtggagga
      721 gcatggagta gaggaaaagc agcagagatg
//
LOCUS       KCLA01000318             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5157upu ultra-conserved element locus uce-540,
            sequence.
ACCESSION   KCLA01000318
VERSION     KCLA01000318.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5157upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-540"
BASE COUNT          193 a          190 c          195 g          180 t
ORIGIN      
        1 tgtgctacga acaggtgcgc acggagccgg taacggcgaa ggccctttgc cacaggaaag
       61 cgccgttaca gcgtgccttc atgaccgcgg agtgacccgg ttcatagcac caccctccgc
      121 gtcctgtact ggtgtgcgct gctgatggcc tgtgcggcct cattagtcat tcccttcccc
      181 gcttgtgacc ttcatgtagc caagcaggtg gtcagtggtc agcagagaag cagcaccctg
      241 cggggagggc ggtgggacgg agatgctcag cagccgccta gctgtttgcc gtgcgtgctg
      301 aaacgtggag tcggcatgtt caggcggctg tttagaaaaa gaatgtaatt aaaataagta
      361 gatgttcttg cagttgtcat tgagaagcac tctgcatttg tttggcactc agaacagtag
      421 cagcagcagc attgcccttg gtgctgattt cttactactc taaaatgtct cctcttagcc
      481 agaatacact ggctgctgct gctcatgctg tgagacacct gcactggcta ctaggcttgt
      541 catgacgcac aaaaccctac catcttcagc ttgacattgt gcaagttata attattcatc
      601 caaatgaata tgtcagagca gcagcagcag acctctcatc agagtaaaag aaaaatacat
      661 caaaacatta tcaacccagc gggaagacag ggaccataag gaaaattacc cgttttaatg
      721 tggatgccat aaagccacgg ctattattat acgcaggg
//
LOCUS       KCLA01000319            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5171upu ultra-conserved element locus uce-4154,
            sequence.
ACCESSION   KCLA01000319
VERSION     KCLA01000319.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5171upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-4154"
BASE COUNT          343 a          179 c          169 g          314 t
ORIGIN      
        1 gtaacatctc ctatccatat acatttattt ttcagcactt gaaacaataa attaagatcc
       61 taatgaattc aattaaatac tgttgctttt gctgttagaa aagggaatga tctttgcaca
      121 aactcagtct catgacaaat gaccaagtta aaaaagagtt tgacacttcc tagaacatac
      181 attttccatt tcaaaagtaa tgcagaaagc tccccagtta cagcacagca ccattctgtg
      241 ctgtaacaaa agctcttagt gtgtttaggg taatttttcc ataatgaaaa aggccagtat
      301 ctgtgacaga ttgcattaat atacacacct gcattccctc tgaacctgct agcctgataa
      361 attgataaga taaattggtc acatgttgtt ttaaaaaggc aaagaacata gttcctaata
      421 aaagaatgct acatatttct tctaaaaggt taaaaagcat ttctcagggc tcttaaatta
      481 ccatattctg ataccaaggg aaaataaaac ctgggcttag agtcttgttt gtacttagag
      541 ggctttccgg acaggaaggc aatcttgatg caattcagta agccacaata ccagtggggc
      601 attacaggtg aaaaacttgc agctgtaccc ttcaccacaa tgtattacaa ctgtacagtg
      661 gaatatttcc tgtacagaaa tagggcttgg ttagctttgt ttcccaagag tagatcacat
      721 taaaatgtta taaaatcatg atttcctgca tttgaatact tgtggtttct caactggttc
      781 caatattaca aaggattttt tgtagcttct attagttgaa gatgtataga agctttttcc
      841 caaagtcagc taaaaggcag ttatatattt taaaagaaca atttctcgca gaagagagga
      901 gttctctttc acatctcttt actatactat tcagtactta ttttataaac tgcaccacag
      961 gtgtaaattt gaaagaagga aatatgctaa gaggaccata aataa
//
LOCUS       KCLA01000320             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5187upu ultra-conserved element locus uce-6873,
            sequence.
ACCESSION   KCLA01000320
VERSION     KCLA01000320.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-6873"
BASE COUNT          280 a          196 c          210 g          260 t
ORIGIN      
        1 gcttcaagcc tgaatcctga gatgccaggg tcagtttctc tgggttacag ggcgcattcc
       61 tcaagttagc ttctttattc ttttggtttt cagtgctgta aaatatgtca gctacatctt
      121 ctgaacagca gcagctctgc ccctccgtgt aaagaagtca aagttgtgta agcccctagc
      181 ctttggagaa atgtttgcac tctgcatatt tgcgtttgtt taggtgacct gtagggtgtt
      241 gttcttcatc ctttctgaga ggacaaagag cttcggaaat gccagtgctt gtcatggctc
      301 tataggtttg tgtctgttgt gcgtacgcat gcactctcac atacgccgag gagaggaagt
      361 cattttattt tacacaaatc agctacttaa agtaaattga gatatataga atttaccaat
      421 gaaatgagtg atttgatgtg aataaaagag gtggtgtgtt gtaaatcagt actgacagcc
      481 aaatgggaaa aattgacaga gcactgtaat cactcccaac atccactgaa gttattgatc
      541 caaaacctct ataatcccct tcacataaca caagcaattt catataatac ctgtaataac
      601 agtgcattca aactcaagta gccatcagaa gctttgtatc taatggtgaa gcaggcctct
      661 gctgagtaag tgtaacaact agagcacaaa actgccgatg gctctcgcct ttcataggta
      721 ccggtctgtg ataagagcga gttcagaaga taaacagtcc ctaacaccga ggaaaatgag
      781 ctattaattg cccgctcgct aaatacattg taaagaccct aaagccctgg gtgcaaaacc
      841 gggaggacat aagcaggatt tggggactga taacacccca ggcactatcc aaacagcagc
      901 tatctgatgt taattacaag aggggaagga cggctgagag gtattt
//
LOCUS       KCLA01000321             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5202upu ultra-conserved element locus uce-2325,
            sequence.
ACCESSION   KCLA01000321
VERSION     KCLA01000321.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-2325"
BASE COUNT          172 a          151 c          120 g          138 t
ORIGIN      
        1 tggcagcacg gggacacaaa ccaagcagag aagcacttgg agacatttcc cagtcttcca
       61 aatggtgaag tattttactt ctcctcacaa aaaattacac gagagaacaa aactcggaag
      121 gaaccacaca catcctttgc agagctggtc cgctgggtca tgcgcagagc acagccaagc
      181 agtgccactg agattgtatt gacaagaaca agatgaatgg ccccctggag actatggggt
      241 ttgtgtgctg gtttccacca ccttttcatc cttttgtacc ctctttcagt tcatatgcag
      301 atgaactcaa accaagtcct cgctaaatac tctttttcac ttggttttgg atgctaggtg
      361 gaggatctaa atatttatga ggcctttttc ctctggttta tgatgcccta tggtccaagg
      421 ctgaggaatt acgttaatga atgcatgcct gcacacacag acacagaaac caggcaaggg
      481 ggggtgccac acacaaagcc ttgtcagctc taacatcggc acttactaaa acagttccca
      541 tgaaaaaaca acaccccccc actaaaaaac ctcacaaccc c
//
LOCUS       KCLA01000322             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5217upu ultra-conserved element locus uce-7622,
            sequence.
ACCESSION   KCLA01000322
VERSION     KCLA01000322.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7622"
BASE COUNT          186 a          120 c          148 g          166 t
ORIGIN      
        1 aataaataga tggaaacgtt aaaaaagaat aaatccaagg cgagtgctat gagtttgctc
       61 atccttagtt tatctgctgc aaatgagcac gtacgaagca gtccacctac tgctccagtt
      121 gctccgctat aatgcagttc cactgaatga tcctgttaac ctaaccttca atttgctggg
      181 atttgaactc tgaattacag cttactaaca tagtttaaca gctggtacaa gggcttcttt
      241 tgaattttta atcacatgaa ttaaagattg ctggagatgc ttttcagacc tccaccagca
      301 ctgatccgat gtacagaaag acaagtatag gtagccccgg gaggattaag agcacaaagg
      361 tacaatggct cgtgaagcga cgctgcgctc tggcaaatta ggaacaccag ggcaagttat
      421 tcccatggag ggaaatccac gctatggctc caaacgcatt gtaaaattca cttttcaact
      481 tgtaggggtt tggggggggg gttttgtgta ggtttggaag atgaagcttt agcagaatgt
      541 ttcttgtgtt ctgggtatgc agggaacact gacgtaaaag aaatagagtg attgctaccg
      601 atagctggaa cgcaacacaa
//
LOCUS       KCLA01000323             480 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5233upu ultra-conserved element locus uce-4750,
            sequence.
ACCESSION   KCLA01000323
VERSION     KCLA01000323.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 480)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..480
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>480
                     /note="ultra-conserved element locus uce-4750"
BASE COUNT          126 a          115 c          110 g          129 t
ORIGIN      
        1 cgccgccgag cgggcgcagt atcagccccg ctcacacgcc gctgcctgcc atcggcggca
       61 ggagctgaaa actatctcta ttgtccagtt tgattgcctg aatcaaactg atttacagca
      121 aatccatctg agctttgata aatctattac agtttcattt cactgatttc attaacgtga
      181 ataaaaccag ccatgctttc tgcataactg ccttttaatg gcttggccct gtcacctgcc
      241 tgaatattaa tccccctgac ttattgctcc acagagggaa tgagtaatgg gtatttgaat
      301 gtgatcagca cagtacaatg caattaagga agcagtactg ttcggtgcct ttaatcctga
      361 actaatttga attgcagttt gatagcacag tgaatcctgc ataattatgg agggtgcata
      421 ttaaactcgg tgacaaaccg gggaggcttt taaccgccgc gcccggggga ggcgagcgaa
//
LOCUS       KCLA01000324             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5248upu ultra-conserved element locus uce-596,
            sequence.
ACCESSION   KCLA01000324
VERSION     KCLA01000324.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5248upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-596"
BASE COUNT          154 a           82 c           91 g          136 t
ORIGIN      
        1 tttaatgata agcacttaaa aaagcaaaaa catcataaaa aggcatcgct aatggacttt
       61 caagaaccag aaattcttaa aataagtatt ttttatacaa gttgtttttg cttagttttt
      121 aaactctgac tggtgtttag ttaaatcttt tacagactca gttcactgaa ggtgacagaa
      181 gtactcactt gagctcaatg aaaactagac atgacaataa atttttcagt cagagacagg
      241 agatcttgtt ataggagtca gtatgggggt cagggcagag cctgttgatg actgaggaaa
      301 agagaagtaa attcattctg cttcaggcac tttgtcaagt gccagtagct taccattgag
      361 aactagtcac ccgttctagt cttacggccc tagaggtcac tcatttgata taaatcatag
      421 caccacgtag gctcagcaac ctattgccat tcgagatgaa ata
//
LOCUS       KCLA01000325             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5264upu ultra-conserved element locus uce-1849,
            sequence.
ACCESSION   KCLA01000325
VERSION     KCLA01000325.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5264upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-1849"
BASE COUNT          256 a          192 c          183 g          278 t
ORIGIN      
        1 tctgtattta tttcagctgt tttgtttatt tgtgaaaatg ctgcaaaatt tagggtctcc
       61 atgaagaagg tagtcccggt ctttctgttc tctggaaaca gcgactgctc agtacacttt
      121 gtgtaaaatg ttgaaacttt tgccgttaaa aggtatcgac agtgaagctt tcactgcagt
      181 atgcctgatt ttaatgcatc tacagtaatt tccagtcagt cgtctatgct atgagatgaa
      241 tgcatttgaa ccagaatcgt tctttctgca tgccacatgc tcatcctgtc catgtgccta
      301 gcaaggatga gcttcacaag gcctttggga tcagccttaa gtgctcaaag agatgaggca
      361 ggcagcacct acttgttaca tggacagaca caaagaccac agaattttcc taggtccgtc
      421 aaattctttt ctgcttcttt catgtcctta ttgatttggt ccattccctc ttcgatgcgt
      481 tccagttgtt ctgattaaac acaagtattt tatccccaca gaatgaagca gatggaaaag
      541 gacaaagaaa aaaaagacaa aaacttcaga cattcactgt gacaaaaaac tggacaccac
      601 atagcagagc cggtacccag tacctacttg ttacaaggac atatgaaaag gccacagcat
      661 ttccctaaat cttttaaatt tttctcggcc tccttcatgt cttggttgat atggttcatg
      721 ccttcttcaa cacgatcgag ttgttctggt caggacaaag ggatgacagt gtggaatgaa
      781 ttgtactttt gtttttttgt cttcaacaga acatgaaaaa tgaccacgta gcactgaatt
      841 cataatggca tcacaatgca ttcctctgag ccgatgcatt gttaaaggga tgtatgcgcc
      901 ctgggagat
//
LOCUS       KCLA01000326             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5280upu ultra-conserved element locus uce-4705,
            sequence.
ACCESSION   KCLA01000326
VERSION     KCLA01000326.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-4705"
BASE COUNT          270 a          193 c          195 g          287 t
ORIGIN      
        1 gcaacaatgc tctgccaagc agcaccttta ctcaggtgct caggagttgt tatgaataac
       61 ctgacatgtc taagcatgtt gtccctcctt gaagctttct aaaggcaaag gtttttgtga
      121 gaatattgaa aggaatgaag aaatatcttg cctactggta tccgctttag atcctccatt
      181 aagcccttgg attgcaagct gcttgaatgc caatcaataa gcagaatatt ttagacgttt
      241 gaaactgaaa tggatttgtg cccagtcttt gagtcacctg cacgacatct gctgagaagt
      301 ccattcgatt ttgaaagttc ttgtggtaga gcaggagtga cctagtcatg ttttcctcct
      361 cccactagcc agctaggaag ttgcactatt gcatgtgggc tgtcaattag cattatctcc
      421 atttgtttta gatccagaca ggcggtctgt ttcaacaatg aacctttcga aacatgttga
      481 tccagtcatt aacaagcggc tctcctcctc atctgcaaca ttactaaatt ctccagacag
      541 aggtacagtt tcaaagatga aaaagaaaat accagcaaga aagaatgttc tagattgtat
      601 tactttgcac atcaaacagg cttctgaagt cgttttctgt acttggtcta agcggcagcg
      661 aaaagacttc aaatgtgaaa agtaactggt tgaacatttt ttcctgtgag aagaaatatg
      721 tatttttcca aacaagagaa cctacctact atagcaaacg ataaaagcgg tgcttctgtc
      781 aggtttttag taaatgaggt agcactgctg aaagaataca tcacgccata gtgcatgcag
      841 tcacctgtga ccttttattt gcattaggcc atttgtgcat cgttctggtt tcttttcttc
      901 tctgggagca gttcctgaat atcagagagc gtattgcatg aagct
//
LOCUS       KCLA01000327             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5296upu ultra-conserved element locus uce-8029,
            sequence.
ACCESSION   KCLA01000327
VERSION     KCLA01000327.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5296upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-8029"
BASE COUNT          187 a          117 c          113 g          176 t
ORIGIN      
        1 ttaaatgcca gaataaagca tgcttgggag aagatagcag ttttatctca ttttccggct
       61 taaagcaaac taaaattcct tgcaagtggg agtggctgag acacaaaacg cagccctgca
      121 attccaagtg taccttcatt tatatcctca agcagattaa attttaaaag ttctctcaat
      181 cgcactgacc agaggagcaa tgcctttgtt agaaaacacg cacactagtt accttataat
      241 caaattttca ctgccctttc tgacaggttt ttaagttact taagggatct atttatatgt
      301 ggaagcatca acatcatgca gtaaatccaa ccacaactca gtcacatatt ttattaagta
      361 taagttcagt gaaagtgcag agtaaactag ggtcctatgt ctctcagtta catctgattt
      421 gcggttgcta taaaaaggcc cacatgccgc tctttcagat gtgttttgga ttgaaaatag
      481 gattaatgtg ctaaagtgtg attagaatgg ttaaacacga ttaattggaa cagacttgta
      541 ttgccaaggg agctccgcta ttactggcca gcctccagtt taccaagtga aca
//
LOCUS       KCLA01000328             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5312upu ultra-conserved element locus uce-5164,
            sequence.
ACCESSION   KCLA01000328
VERSION     KCLA01000328.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5312upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-5164"
BASE COUNT          258 a          193 c          170 g          281 t
ORIGIN      
        1 aaatcttgta gtgtccaggc aatacggttg ataaattaat gtaaacaatt gacagtattt
       61 tgcattaaat agttcgacac cagtcagaca tctcacagag aataaggcta tgataaaatg
      121 ccatagaaca gttcctctga tgttggtttt ttttccaata gtggctactt tgaaaagatt
      181 ctctgcttac ctacaggaac aacacatgga gaagagcgtg ggggtacatt atctttccag
      241 tgacatattt agccagttat tcagactata atgaagctgt gtaatgaagt caatgtcctt
      301 gaaagttctt catcaatttt tttctcatct gtcagcatat ccacttgccg acacaatatt
      361 aattaaacac aacatttcct ggagtgttga agtgaagtcc catcactgat aatgaacagg
      421 tttaggagag tcacatccca acaaaattac tttttaaacc agccttatta agcagaaaat
      481 tagacctaaa tcaccctaca acatcctcat taaaagccac tgatccttgg ctgcttctat
      541 gttctaacat ctttaattag caaactgcta gtctatctgc catggtaaat gctattaatc
      601 ttacatttca tttgctttct cttaacctat cgtttgccca cttgagggag acgctcgctg
      661 ccaccagaat tcatctcact gcgtctaatg tccttgtgag gatgacaaat gcagtggtca
      721 tgggttaaac acagtggctc tctctgccct gactccatca ctgaattcag gatttgtagg
      781 catcctgggt ggcaggcttg ctgtttttat ggggaaatga agagtgtttt caagtggatc
      841 ctatggaata cccttgtcaa cacaggcaac tgtggatcag tgtccgctct gctgccctgc
      901 tt
//
LOCUS       KCLA01000329             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5327upu ultra-conserved element locus uce-7959,
            sequence.
ACCESSION   KCLA01000329
VERSION     KCLA01000329.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5327upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-7959"
BASE COUNT          136 a           78 c           81 g          132 t
ORIGIN      
        1 tttaatgtca gtgaggaaaa aaccccctca gttggctgag ttacgttgga gagatggctg
       61 tttcattcca taaagtgtct gcagtggatt tgaacagtag gaaatccaag ggtgataaat
      121 agctatttct aagtaaattt catgcaattg ccctttggtt aaagtctttc ctctcagcac
      181 tttcctgtgc acatagccca actaataata ttcaggagca agtgctttcc agtgtgacaa
      241 ctgattgcac tttgaagcag taaatggctg atttcataat tggtataatt tttcacaagt
      301 acctgaatgt catatacaga aagaataagc aacctggact taatacggga gctttttcaa
      361 ttctcctaaa aatcaataat gtattaaacc cctctaactg attaaaataa tgtgaaccct
      421 gagtagg
//
LOCUS       KCLA01000330             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5343upu ultra-conserved element locus uce-5021,
            sequence.
ACCESSION   KCLA01000330
VERSION     KCLA01000330.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5343upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-5021"
BASE COUNT          339 a          143 c          166 g          295 t
ORIGIN      
        1 tcagtagtat tttttctgag cagataatag cactaaataa actgatagaa cagctgattt
       61 tggagtatct gtgagattat caaaatacga agaaaaataa ttgggagaga tgccagatgt
      121 tcctttaaaa gacaaaaact gtaaactgaa ttcaaccttt aagacaatat cacaaagaaa
      181 aatagaactg aaaagaataa taattgtgtc taatagaact gacaaacaat cataattctt
      241 cccattaaat aaatgtgtta taaaaaattt attatcaaat gccacattat gcaagccagg
      301 attcaaagat gagttctttg cattaagtac agtagatgcc attaaggaaa acagtcaata
      361 tgtcactaag ccacggcctg taaaattaaa ttgatttggt aaatgtaagt aagatagatc
      421 tgtttgcttt catcatcaat tttgagtggg tgaacaggtg atgtcaccaa cctgggagcg
      481 ataaagatgc aggaccatct ggaaagcttt gtgatggatg ggcaactgct tttggatagt
      541 gacagtgctg tggtactttg tcacttggga tgcagtactt aataactttt caataccatc
      601 ataataaatt tcactgcctt attaatatag aaatggtgag ttattaccgt gatggctatt
      661 gtaaataaca agagatgcag ctgtcaaaag ctgattgttt gggcatgttt ctttaagcaa
      721 cacagttgac ttgggataat caacgtatgt ctataccagc agagtttatt gctcttgtca
      781 aaagaaaaag ctgcattatt caaaaattat atgaagtcca taataaacaa gtttaatata
      841 ttatcagact tttcctataa gtttcctaac atagagccat caatcacttt taataatgcc
      901 tttccatgta caataatatc cttatgctgt aataatgtcc ttt
//
LOCUS       KCLA01000331             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5358upu ultra-conserved element locus uce-5292,
            sequence.
ACCESSION   KCLA01000331
VERSION     KCLA01000331.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5358upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-5292"
BASE COUNT          195 a          152 c          171 g          225 t
ORIGIN      
        1 attagtactt tcatgactat tgcacaatta agaaggtgca tggggttgag tacaagttca
       61 acctttcttg ggtcttgttt tctgttaatc tctgtcggtt tttgcccgct gaccttgagg
      121 gactgaatac acggggatgc tgctcatcac agtctgcata aacaatgtcc tcgttaagag
      181 ctgataggct tagcaaggcc catgaagaag ttagctgcca gagcagagca gaacctggga
      241 ctgttgcctc cctctgggct ttagcccctc ctcattaagc aggttcaggt tattgattag
      301 gagcttgtgt ttggaagagt cttacttact ccatgcatta tcttgacaga ttgatcagac
      361 ctgattgaga acctcttaaa ggaacgaaca gctgtaatgg gaaagttgga ctctgtcatc
      421 cgttaggatg attctgggag cgagaagaac gaggctgaca tcttggagca attgtattta
      481 caattaacat ggctgaaaac gattgcctct attgatcccc ccttcctgca attacagccc
      541 cattgtttac attccagcac ttcggttata aaaaggaaat tcaataatta ttgcattatt
      601 taaagttaaa gtgccacaga gtttgctggc tacgcttgct ggttgattta acgttcagta
      661 aaatccatgc tgagctctcc atctttaggt tgagcaatat ttggctttta atgagacttc
      721 aagggctggt ggagcaaacc cag
//
LOCUS       KCLA01000332             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5372upu ultra-conserved element locus uce-1989,
            sequence.
ACCESSION   KCLA01000332
VERSION     KCLA01000332.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5372upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-1989"
BASE COUNT          296 a          172 c          186 g          301 t
ORIGIN      
        1 tgatgaatgt gatacgtaac aaactgtatt ttttgcaaaa caatgctttg gaatggcaac
       61 tttgaaaaat gctggtggtg cctatgtatt tttgtaatat taaatgattg cacacagtaa
      121 ttataaagta tatcatatta attgagcaag cagtattttt gtttcacaga gaaatgagct
      181 cagtacagtt ctgtgtgaaa tgtaaaaaat aaaagggtac aatggctttc tgtctgttac
      241 ttctgctggt gccatgcctg aacagaggaa aagagtttca ctcctgttgt ttattgattt
      301 tctagattaa gaatcccagt gagagaattg taacagacaa ccataaaatt atttttggtg
      361 tgcttatttg cctttccctt gcatctattt ggcctgtgcc tgtagacaat tatgcgttcc
      421 agcctagact caggtgctaa taatgaagga caaatagaat catatgtgta aacttcccct
      481 tctgatgaaa atttatatta actttctgcc actgtaaaca gaactgcata gctcagtgtc
      541 cctgatgaat tggtgatgaa ttcagtcatt tatatcccag gaatctgtgc atttatggga
      601 aaagatgaaa accgtctgta ttgtgtaacc ttgcactttt tgagtaagaa aaagaaaaca
      661 gcagcctgtt tagttcatca cttaaagtgt gtaaatttca gctcaaatac cagatttctg
      721 caggactctc cctgtctcca cttcagggat ccctgccaat ataaacaagc caaacagtgc
      781 agagtgccat gttatcgcta caactgtgaa cttagacact cacagcctcc tataaaaatt
      841 gttatgaata tctctgcaat acaacagaat ctttgttaca tgctgaagct ggacagcttg
      901 acagtttggc agctctgctg gagaacaaag tcatttgggg tagataagaa cctgg
//
LOCUS       KCLA01000333             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5388upu ultra-conserved element locus uce-8031,
            sequence.
ACCESSION   KCLA01000333
VERSION     KCLA01000333.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5388upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-8031"
BASE COUNT          234 a          198 c          210 g          110 t
ORIGIN      
        1 acaacaagaa ttgagtaaag gaagaaagag ctacagcaac aactaccaga acagagagaa
       61 gtaaagtttt ccaaagaaag aaaggagttc aggtagtctt tggactactg cagccaaggt
      121 tgctaacaag gtacaaaggc agactgcaaa gcaccaagac agaaaacagc caaggcaaac
      181 agaggggaaa gaaaagctgg aagaggggtt cttcttttct catagctgta tgtatgacat
      241 gagggaaaag acaagactgg aaggccagag gatgacagaa caagtcagac tagaaagcat
      301 gacccagcaa tacggaaata ggcttgatgg gtgacaagaa aaaggagaga aggggagaaa
      361 aactatcaat gagggggggc agaaggggaa gcaggcccaa gggaagagga cagggatcat
      421 gctgaagaag tagcgagcgc gggtgcgcta gcactcagct gcctactcac cttgatgcac
      481 tgcgacattg cagccgtgcc cgtcgcagta aacgagcggg ttctcggccc agcccctctc
      541 gtcggagcac acgcagcagc cgccgatcat ctccttcatg ctactggaga actctccctc
      601 cagtgacaca ggcagcagca gcggctcgct agagaccatc taagggttaa aagaaccgtc
      661 gtcaacgcca caacgcgctt caccccccgc ctgcccccgc ccccggcggt gtctcccctc
      721 agtcactctg ccgccgccgc cgccaccgcc gc
//
LOCUS       KCLA01000334             887 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5404upu ultra-conserved element locus uce-1810,
            sequence.
ACCESSION   KCLA01000334
VERSION     KCLA01000334.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 887)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5404upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>887
                     /note="ultra-conserved element locus uce-1810"
BASE COUNT          263 a          141 c          168 g          315 t
ORIGIN      
        1 ctgttaaacc ccagggaagt gcattttgct tcgttcagaa caacttcaaa caatgaaatg
       61 tcttttttta ttggtgtctg tattaagaat tagaacctat tcagacattc caaaatgtta
      121 atgcgtaaga gctttttctg attaggttaa acaaactggt aggtttattt atctctctaa
      181 tgcattatca gggaaagggg aagcaatctt cttttgtttc ttactcctgt gatcacagaa
      241 cacttgccaa agttatggct agccaaaaag acagaaataa aattgctaaa aatataagcc
      301 ttctgtttag cagagttttt gagccatgtt ttgaaatcgc agggcttcta catgtttact
      361 tcaaatcagg cttatagtca agtttgaggc tttgtttgta tggattgtcc tgaagtagat
      421 cctgatattt aattaaaatg acactaaatc acattgaatt gataagactt ggcatctcaa
      481 acaaaggtaa ttgcccgtat tggttttgta caaaaataga gctgcttgga aaatgtgcag
      541 ccaacacaga ctgtcaactc catttataga tcaatatgtg aaaaccattg atcaggcagg
      601 catgtgtaac agtaacactt tgcatttatt tgttgttttt ataccgtgtt aaggcttaca
      661 ggattatcgg cttccaaaat attttgactt cctcgtaaat atgttatctg tttaatgtta
      721 attacgagac aggctccagc cctcttttag agtatttgca gtttcattgc tatggatagt
      781 tttagctgaa aatggattaa ttcaatctcc gggagatcgt cagagtttct tttattggag
      841 agtttattcg gggaaagttt tttgagaatt attttcttta ctggttt
//
LOCUS       KCLA01000335             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5418upu ultra-conserved element locus uce-2480,
            sequence.
ACCESSION   KCLA01000335
VERSION     KCLA01000335.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5418upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-2480"
BASE COUNT          182 a          101 c           83 g          186 t
ORIGIN      
        1 aaggaatggc attttcctca taaaggaaat tcctaatttt gtgcagagga agttaaagtt
       61 aatctgaaag ccaagcaaat cgttctgcaa ttgtgatggg tttgtttcat taaccggtgc
      121 ctgaaaacaa cagttaaatt gacacataaa accagcaatt gtcttaattt gtgtggtgca
      181 ctccacacaa aagccctaaa tacgttcaaa ttagaacaag ctgcttgatt gtcactgcag
      241 tctcatgtca tattaatgca tgacaaacat taaatcatac acttaaatgg ctatttatat
      301 catttaaatg tttactgaca caccagatca tcactcattt aaatgtgact ttctgacagc
      361 taatttcagt taattttcct cgattcactt aattagaact ttcaatcaag aaaaggcctg
      421 tacatatctc gacaacatat cattcttttt tttattatta ttgttattag gattcccagc
      481 tactgagttg ctgaaagcat tctttaaaat taattaccac atagggtagt atctctctga
      541 atgatcatat gg
//
LOCUS       KCLA01000336             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5434upu ultra-conserved element locus uce-780,
            sequence.
ACCESSION   KCLA01000336
VERSION     KCLA01000336.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-780"
BASE COUNT          302 a          147 c          143 g          324 t
ORIGIN      
        1 tgcatggaca tttttagagt tgtgtaaaat gctattagtc aggaatgttc agcattcatt
       61 ttgcaaatga ataaaatcct attgtttcat attttattta cttcattttt accttattta
      121 tcatttgttg aacagatgta ctgaaaactg aagttcattt acaagttttt tgcttttttt
      181 agtctcaagt tttgagaatg cttttgttca gtgctttttt cccccagatg taaacaactc
      241 tgttccaaag attccctcag tacatagttc tctatttctg aaatagttgt agatatctat
      301 ggaaaacaaa gtaatgacat ttcagcagtg tatcatcctg aatcagaaac taaagcatgc
      361 aaactgaaat tgatttgtaa caggtacctt attagaagca aacatcaaga aaactagaat
      421 caatgttgaa acaaaaattt gtcttgtaag caatcctgag tgaaatgtgt tgacacagca
      481 tcacattcca tagccccatt tttgcatgct tttcaaagca cagccatctc gatctgggag
      541 agatgaataa ttgactgatc actgcataat tcaacgtact gttgtaaaaa ttcaaggtct
      601 ggcaaatttg aagcttttct tctttattga gactgaggtt aaagtttcaa tcaaccttga
      661 agaaacattt aaatagcaga agggtgcatg atttattaaa gtgcatatta ttcttcctta
      721 tattccctcc ttcttcatta agcttcctta cataatgttt atgtgaagtt tatgacgtgt
      781 accttgtacg ttgagcaaag attaacttaa aagatagcac taaaggtcaa taatcctatt
      841 tttcaaattg aaataaagac ttgaattaca gatggaaatg agtttgaaaa tacaaaacat
      901 atttactcat atctgt
//
LOCUS       KCLA01000337             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5449upu ultra-conserved element locus uce-857,
            sequence.
ACCESSION   KCLA01000337
VERSION     KCLA01000337.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-857"
BASE COUNT          216 a          138 c          122 g          200 t
ORIGIN      
        1 cttctgccct ttattttact gaagaatcag tagttcaaga cctagataaa tatttcaaaa
       61 actatactat ttgtgagcag agcaggtcac taccatttcc cagtgcattt ggagttcatg
      121 tgaaataagg gcagaagagt gatgagctgc atttttaaca tgggcataca cagaatagtt
      181 gtctagctga tagagaatgc gtaatgcaac atctgcacgg tgcgccttgc caaagcccat
      241 cccaaataaa tgtagtgcat tctccctagt gcaattaact ctcatactct ggcaggtttt
      301 gctagaagat catcaaggta gattaccttc cagcatatga actaaatact tacaggtgtt
      361 atatcatcag ttattactta caaacttctg catttaacaa gacatccagg caaatgaatg
      421 atctaattta tgaattattt ataagaattt cacagcatgc tcctggcgtc atccatggcc
      481 ttttccaggt catatgacac caattagagc tgaattttaa attattcaat aacctgaact
      541 ctcttgtcat ttaacatata gatatcaatg cagtaaacaa gttaagtcta atgggccctg
      601 gaggtttgcg ttcctccgcc catcagcagc agaagctgta tgctaccact ggaatagaaa
      661 ataatagaat gcagca
//
LOCUS       KCLA01000338             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5478upu ultra-conserved element locus uce-6750,
            sequence.
ACCESSION   KCLA01000338
VERSION     KCLA01000338.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-6750"
BASE COUNT          208 a          124 c          103 g          189 t
ORIGIN      
        1 ttttctcaat cacttaggca tctttaaagg ggcaagcaga ggaagatgga ttatgagaat
       61 tgtgtatatg tatttaatga aagcagcttc ctttacccct atataatata atcacaacat
      121 atttcctgac tccacactag catggctctt tatccagtta acattcccaa ggctgatgcc
      181 tgaagtatct aagatcactt tcaaatgccc tttctaacaa gacctgagca agaggccact
      241 aattttcact gaacaaaaag ccactggaga gagatccgtt tgtcaatatc aactggtcca
      301 gcaatttccc atcttcagac acatgggcct atctgagctg gcagatgttt agacaagatt
      361 ttataaattg ttcaatatca gaccataatg aaccccaact gaccattcca aagcagctaa
      421 aagcattcaa gatctcccct gctgggatct aataatgctc tcacgctgga acattattaa
      481 tcatggaata aaataaatga gcctcttgaa aaataagtga atgattgatt aaagggcaat
      541 ctaagaagct attattcttg ttttataact gtaagttata ttcattcaat ttatcttttg
      601 gagaaaataa atgactgttc gtat
//
LOCUS       KCLA01000339            1087 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5494upu ultra-conserved element locus uce-1980,
            sequence.
ACCESSION   KCLA01000339
VERSION     KCLA01000339.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5494upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1087
                     /note="ultra-conserved element locus uce-1980"
BASE COUNT          321 a          192 c          237 g          337 t
ORIGIN      
        1 ttatttagtc cttggcacta atataatgct gcagttatct atctattttt aaggagccta
       61 cagtaaatat ttcaagttca aaaacccctt ggtgtttaca gacattactc ttccctatga
      121 ctgtctcagt gtttggggaa tagaatagta ttgaacagtg aaccaactcc caagttcaaa
      181 ggaagattta tttaaatagc ttctccacag gcaaactgaa gagagttcca ctccagtttg
      241 ctgcattact tgggtgttaa aactcctctg accgcttcgt aatgattatg aagtcctacc
      301 tataccaaat aggtttcagg tcagcctcag ttgtgaccat aataaaactt atttccttgt
      361 cttttaatgt ttgaaaggta gtaatgcagt gtgtgtgtgg tctgagtttt ttgcagacgt
      421 gacctgcatt taatcaggga aaattaattc cctaagctgc tggcaggcag catgtacttg
      481 ttaattattc aggtggatga caaatgcaga gcagaggttc tcgcaaagac aaagtttgta
      541 tgatgcatgt ttagtaactg ataggcttga cattctgtgg tgtcttattc agtgctaatc
      601 ctaataagct gcctgatgag atgaacgcct atcctcctgt cctttagaga gagaaaatag
      661 agatttgaaa gaacttcatt atagcaataa atcccatact ttctgttatt cctggtgaaa
      721 agagatcttg tccagatgaa taacacgcac acagaaagaa gtcagaatag gactgtaata
      781 cagagcacaa atgaaaagac aactgtattg tcagtgtctc tgctgtagaa gtggctgcgg
      841 tttaatatta tgggtaggca aagtttaggc aatttaatgc ccttcaggtt ctgtggtttt
      901 gatctacaag tgctgtaatc ctatggatgt atgattccaa gacgtgagag ttgccaagga
      961 agtaacttga aaaaattgta ttaatggtag cagttgttat ttatcggtca gtggccatca
     1021 tcaaagttac ccgtggacat ggggagcatt aataatccgg aggctgccca tgcaagtggg
     1081 tcctgga
//
LOCUS       KCLA01000340             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5509upu ultra-conserved element locus uce-3674,
            sequence.
ACCESSION   KCLA01000340
VERSION     KCLA01000340.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5509upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-3674"
BASE COUNT          127 a           82 c           71 g          133 t
ORIGIN      
        1 accggttccc tcgtggtccc gagacccggg catcctcgcc gccgctgatc gctgccactt
       61 aagtgaattt aatacaatta ttttcctaaa tagtttgaga cgccatatct acaagacata
      121 aaatttatcg gatctttatg taggattatc ccggagtcga atatataaat caatttctaa
      181 ggtctaatga catacaaacg cttaaaaact aaaggcgatg tagtaaattt aaattaccat
      241 tacaaatgta agctttgtag tcggcgtgtg acctgctaag gattatattt aactcccctg
      301 agagtggttt atcataaaac tttatacttt tattacagtg aattattaac tcctccatga
      361 tgtgagtcat tccaggatct gactatagct tttttaatga cactgtaata gac
//
LOCUS       KCLA01000341             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5524upu ultra-conserved element locus uce-3554,
            sequence.
ACCESSION   KCLA01000341
VERSION     KCLA01000341.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-3554"
BASE COUNT          249 a          141 c          130 g          184 t
ORIGIN      
        1 atgatgaaaa atggccactg actttgctta agggaaccca taagccttgc acatactaca
       61 ttgtgctgtg ttatctctag ttgaaagact gtgcaaataa aggaatcagc cacatgaaat
      121 tttaagattc atcccaggtg gccataaaaa taattcaaaa atttagagac caagcctatt
      181 acaatggtag aattcccact taacatttcc caaaaagtcc ttccaataat aacaaaaatc
      241 taaaagcttg cattagcgtt tggtcagaga ctctccaaca agcatacggc acactgtaag
      301 aattcaattt ggaaaccatc atctaaagca cagaggagaa caggaaagtc atattgctat
      361 aatgcttaga ttatcaatca tcttgacagt ttattggctt tatcaccaca cataccatta
      421 aaatgatgtc tggcctagaa tgtcaggagg caaacattaa acagaccagg attaaaaagc
      481 agatcccaaa cagcactcca gtaaagtttc ccttccactc ttaaattagt tagagctgac
      541 taagtaactg gcactagact ttgaagaaat atacagtcta aaaggcgcag agtcaacaca
      601 ggcttgacga gctgataggt aatgtcatgt tatggcaact ctaaagctcc tgcagttgat
      661 ttatcacgta ctgtgtgcag cagaatgatt gctaatggag ggtg
//
LOCUS       KCLA01000342             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5540upu ultra-conserved element locus uce-6732,
            sequence.
ACCESSION   KCLA01000342
VERSION     KCLA01000342.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-6732"
BASE COUNT          233 a          164 c          153 g          246 t
ORIGIN      
        1 ttcctcatca gggaagtgtt ctacttactt catcatcttg ctctatgctg gacaatgggg
       61 aatggacagt cgtgctcatc atggtgattg tcttaaaatt aggtgatgct gctttaaaat
      121 tcatttaata tttagctatg atgggtgtat atgtatgatc cataaggata taagtattta
      181 tctctctaaa aggcgatttt ccttgcttgt gagaaatttt cttaccggga agctatccaa
      241 aactcctttc acggaatgtt ctcagctctt gtgtttgctc cttctgcaca cctcttccca
      301 agtgcagaga ggcacatctg tctgttttct gctttatcaa gcagacatct acatctgcga
      361 ggaaaactcc acttccttag ctcaaaacct gtatctgatt gtggtaataa agcaccactt
      421 cctcagttca aaacatccat cagacaggac caattacttc aaatgactca tagcaacagg
      481 caaagcaata gtcgtctttc taaagccttt gaacttctac tgcttcaaag gtgtcctgaa
      541 acgtggctat gaggcgattg tctacgattg ccaaattacc agtgtccaag ctttgatgtt
      601 cgttatttcc agcaacgaag ggaaagcagc tcatttgccc acggagaaaa agagcaaaac
      661 aaagacctat ttcctaggtg aagggagctc ttgaaagggt gccttcttga aggcaaagca
      721 gaggaaagtt tatgctttaa tcaagtccta gaattagatt atcaaattgc atcaaattat
      781 agtaatatta ttataa
//
LOCUS       KCLA01000343             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5556upu ultra-conserved element locus uce-4895,
            sequence.
ACCESSION   KCLA01000343
VERSION     KCLA01000343.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5556upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-4895"
BASE COUNT          183 a          225 c          233 g          254 t
ORIGIN      
        1 gagagcccgt tgtgcttgcc cagcttcacc ccggctgggc tgcactgctg ggtgctctcg
       61 gccaggccct tggtgacggt ggccacgttg ctcagctggt tgaccacccg gccgccaaca
      121 gccggaacct tctcaccgtt gactcccacc acggttttcc ctttcctggt ggatttgggc
      181 gactgccggg agttcttccc ttgcggttta tcggttcctt tgttggtttt gggtgatttt
      241 ttccgagtgg ctttctggga agagctttgg tttgtaccca cattcttgcc ggatgaactt
      301 ttcctcttcg attttgacac tttgctattg gtgctaattt gaccagatgg ctcattaaat
      361 gttgacaagc atggactctt ttcgagaagg ctgacagaat cttcatcgtt gaacatatgg
      421 aactggaact ggtgattatt taaagcaaac ccattatctg cctgatcctc ggtctgcagg
      481 accccacagt tccacttgac cttctcagtg ctgttgaggg tggcctgagg gctctcctga
      541 aaacctttca gggtgcccag gggcttggcg tcagagacag ctatctgcgg ggacaggttg
      601 ggagtgtcgg gaggggacat ctccgaaagc gatgactggc ggaacttatc aggcgtgaag
      661 ttggaaatgt ctaaaaggtc cgtagactcc ttcagcgggg tgatttcatc tatgctctgc
      721 tggatcacta gcttgggact gcagtgggcc aagaaatcat cgttaatatc atcctcgccg
      781 tccttttcac aagactttag acttaaagaa ctgtaattgc tagaactaac tgacaatgaa
      841 cccactgaat caaaactaat gagcctgcca tcatctgtac ttagtgtacc tcgct
//
LOCUS       KCLA01000344            1087 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5572upu ultra-conserved element locus uce-6187,
            sequence.
ACCESSION   KCLA01000344
VERSION     KCLA01000344.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5572upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1087
                     /note="ultra-conserved element locus uce-6187"
BASE COUNT          348 a          235 c          209 g          295 t
ORIGIN      
        1 cttcctccct gtgtttattt tctctgcacc atacaattac aggaagcacg tataattttg
       61 ccttctaaat catgaaacac acatacttaa tcaacaccta aatcatctct catcttggct
      121 ggggttgtga gggtgtaagt gggaagagag acaggataga aaaaggaagc tatagtcacc
      181 atatgattaa catggtctcc tacctgcctg tacttgacct gacagcttat tgcaacaaag
      241 acagcaaata aacactcagt tcaagagtta tttaaaggca tgtgcttacc aggttcccca
      301 acaatatacc ccgtctgaaa gctaccacaa aagacctaca acgctgtctg acttaacttc
      361 acaatgccgt gctgaggcct ggggttttct gtcgtgtttg tttctattca gcgatacttc
      421 attgctagcc tagaaatgac agtaggtgga aacgctatct ttcattacac aaagtataaa
      481 tagtgtaatc tatcagcact gtcaatcaag atgattgatt acaggctgtc atagagaaga
      541 gtgacatatt agaaaagttt tgttaacaat gcctattgct agtcagcctg ccacagaagc
      601 tggtgattaa tgtgttgtca gcctgtaatc ccacacccct ggctaatgag gcaggaattt
      661 atcatcttta cagagtggca gatgtcagaa ggaaaggaat ccaagtgctg gaaacaatat
      721 actttttctt accacgcctg acaagtctga caggcctaaa aacccacaaa gaagctttgt
      781 gtaagcacaa acttaaaacg aggaactttc atttggcatc tttgctttaa atagtgctgc
      841 aaatcagcct ctatccctca aaaagggcac aataaaaagc tctatgaact ctgaacccat
      901 ccttgacaac tagaaaatct caagaaaggt ttctatggca ggcaaacaga caccttcctt
      961 tgcaagagaa ggagcaagca acttttaact ttacctgtga acttgtgaac tacagtagga
     1021 tgagaattct tctgatcgga gcgcagaatg caccctactt caaagattta tcagtaaaga
     1081 tcttagg
//
LOCUS       KCLA01000345             994 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5588upu ultra-conserved element locus uce-4171,
            sequence.
ACCESSION   KCLA01000345
VERSION     KCLA01000345.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5588upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>994
                     /note="ultra-conserved element locus uce-4171"
BASE COUNT          299 a          214 c          198 g          283 t
ORIGIN      
        1 atcaagctcc cagccataat cattcagact ctgctcctaa tatagcagaa gccctgcaga
       61 actggggttc actggcagca gacttctgat tccttcataa actgtaattc tggtgctgca
      121 ggtttaatta agtacgtgtc agttaatcag ccactgaaaa catgggcctc cattggggaa
      181 ttacctgagt gaaaacagac caaacatgaa gaggatccct tgaaactccc cttgaaatgc
      241 caaaatggaa agaaagttat caaataaaat ctgtttgctt gtggctgtac tgtgacagct
      301 ttgttagtcc taacagatga caaggattat tcagtcaata tagatttacc ctgagagttt
      361 tgctgttttc aggcacctcc aggaaaatga cagccattaa atatgtacaa aggccagacc
      421 aggacccgtg gcctctagct ttaagctgct gccttttctg agttatgtca ggatcaattt
      481 tttctaatag atatcactta tcctacacga taatcagact atcatagccc attgattaca
      541 tgacagcctg atttaggtct ggtctagaag ataagaaaca cagcgaaatc ttgcctggtt
      601 catcaaggaa ttaaaatcct ggtttgggac ttttcctgga agttacttta tacgcaggaa
      661 agacaaggga ggtgtttttc ccagttcctc tccctcataa atcaccttca cttcatcaca
      721 gggagccgca gcccagggct tgggttcatc accaatgtca aaccttctaa actgttaatt
      781 accactgatt ggcactcagc aattcatttt gaaggctcca ctggtgttga ctgcaccgta
      841 tttatgaaga tccagtttgg gatcaagaca ggtgagcgtt aggtgtgatc aaacagaaac
      901 ctgcagaact acaaagacaa gcgctgttac aagctaagtg agagatgaca tttttatatt
      961 actgcagata atatttttat ttacattaac aatc
//
LOCUS       KCLA01000346             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5604upu ultra-conserved element locus uce-2140,
            sequence.
ACCESSION   KCLA01000346
VERSION     KCLA01000346.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-2140"
BASE COUNT          339 a          189 c          146 g          305 t
ORIGIN      
        1 tccttctaat atttatttgt tttttctact ctttcattaa aggaacagcc ttatgagaac
       61 ataagcacat catcataaaa atacatgttt ggaatcctgt aaatgaaaac aatcaaaaca
      121 aaaacagcca cacaaacaaa aaagccctac aactttacaa agttggtact gctgctatat
      181 atattgttcc tggcatagct tagaggtctt tgtttctgta aattcaattg agtgtttcta
      241 agtctagcaa gaggttctaa ttattgttag aagcctaatt agcatttagt attacattac
      301 aacaactgca gcaaaattgt acccgttctc caataaacag tattcacagt gtgcaatcaa
      361 gctgctgtac gatgcaatga gaattaatag cactgcacga caatggtaaa tcctacaact
      421 cccgctgtgt gtgtttaata atttttcact ccttccagat tgttcccatc aagcacaatt
      481 cccaagatcc taatcagctt tcttacccat caatactaca cagagatctg agcactgaaa
      541 attatctgca atttcaaaaa gtgctttgtt gcattattag gccactgacc taagaggtaa
      601 tgggtaaata gtttctgaaa aatgtccaaa gcacaacata aattaaagct tatactctgg
      661 cctgctgttc taaccagagc tgtaactgca aactctaaca gtttttacgc aacgtcataa
      721 aatgctgtat tattttttac ataaagatta gtacaaaaat gacaatgctt atatttaaat
      781 aacttatttt aatgtatttt attcgggcaa tgcaagtcgg aaagcaatat gcacctttta
      841 tatgcattca cacacaaagc aatcagagaa caactactgt agttttgtct gcgtgcatga
      901 agaatatagg agtcacctct gaaagattac tcaaatataa acaggcacac agaaagaaat
      961 ctgcatttta gttttctgt
//
LOCUS       KCLA01000347             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5620upu ultra-conserved element locus uce-1566,
            sequence.
ACCESSION   KCLA01000347
VERSION     KCLA01000347.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5620upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-1566"
BASE COUNT          249 a          153 c          140 g          285 t
ORIGIN      
        1 tggtatagtc ccattattga gcccaatact ttatgaattt cagttgagag aatccagtat
       61 ttttaaagat agtggtattt taagataaga gctaccaccc ttttgcaata aaaaaaatac
      121 atccttgttt acgaaaatac tggatctcat gaaaacttgg gtaaaggcat ctctattttg
      181 gtctcttagt taaatgatta cttacaaatt aacatccttg ttattaatag ctacatccta
      241 aagccatttt tggagggggg aacattacac tttcctctat ttatatccca tgtgtctgtc
      301 ctctgtcatt ctctttctct ttaatcttgt ttgagtgtac agctcactcg tccttatttt
      361 attgactcaa tcacaggcac actgtcactt tttataaaac ggtcactgca gaatcacatc
      421 aagcaaattc ttgattctgc agtcagtaat ttagtgcctt tatggaattg caatttcagg
      481 gctcactgct tgtttttcta aaacgtactt taggaattag ttactccagc cacaaatcag
      541 ttgaatttat gcacagttgt aatacagttt atggcctcat ggtacattgc ttcaaaaaca
      601 gcagatgtga aattatgata aatataatga gtgttttttt gcctgatcta ctggagtaga
      661 gaaggatctg gagcgtgttt acctatccca tacagtacat ttaatgtctt agtcaggact
      721 cctgacaaag gctgattaat gtcctcatct cttttattaa agataagagt agcactgcag
      781 tcaggagata gaaagcacac cataaatctt tgtaaaatga gcagtca
//
LOCUS       KCLA01000348             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5636upu ultra-conserved element locus uce-4004,
            sequence.
ACCESSION   KCLA01000348
VERSION     KCLA01000348.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5636upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-4004"
BASE COUNT          138 a          113 c          139 g          243 t
ORIGIN      
        1 gtgtttgttt ttagctctcg tgggtgtttg cttatttaat acattccgtc agggacgtaa
       61 gcgacgtgcg ttttgcattc tttcttctcc cttaggattt gtttgttttg ttcgaatgaa
      121 gttgcttttg cagcaccaaa gacttaatca tccatttcct ctgaaaggta gctacttttt
      181 cgtagacctc aagtgtagtg tagagtagag atgggattta cggaaggcgt tcgggtgagg
      241 ctgggtttta gcttatgggc aaatactaaa ttgcatcatt tatcttgaat gtatcctaga
      301 taagctgcta tataacaatt gccacttcca atagctgtga aattaggtga ttaactagtc
      361 ctttcttacc ctttgcattt ctatacaagt ccgatgacgt gagacacaag ccgggtttgg
      421 ggtttggttt tattttttcc ttctttttaa tgcagctgtt ctcatgtttg aagtgttgta
      481 actactatgc tgtacatgac ggacgatgat tgctttgttc tttggggtgt gttacttgca
      541 tcggtatttt atctccatta actctgagct catcactgcg tagaagcgga tgtactgacg
      601 taacttaatt ttttaatgct ttcttctcgg cat
//
LOCUS       KCLA01000349             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5651upu ultra-conserved element locus uce-23,
            sequence.
ACCESSION   KCLA01000349
VERSION     KCLA01000349.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5651upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-23"
BASE COUNT          218 a          114 c           99 g          222 t
ORIGIN      
        1 ctctatatat ttctatatac agatatatag aaataaaatt agtattagtc tttccacata
       61 gaagttcaca tggcacaaaa cattttgtgt tgagtttcct aaatcgatgt ttaaagttga
      121 aattactgca ttgaacgggt tctttgaaaa gcaacccatt gattttaatc tgcttgaagc
      181 aatcaattac tccctgtcct ctttattcca aactgtaatg aaaactaaac tgcattgtct
      241 tgaaaactaa atgtgaagat gatcataaac agaatttaaa ctccatggat tattcatatc
      301 tacccattta gatttgccat ttccattatg agtacatttg ccatgagcat ttaatggaca
      361 tctaaaaggg aattcattaa agcaggagct gttggcagca cttatgggct tcagactgct
      421 ttatgtttgc ctttaatagc tcactattat aaaagtgata tattgtgttc atcccattag
      481 tagtttgcag aaaggtctgt aagacataac aaatcctttt gagtattgtc agaatcaaaa
      541 ctaaatcaca gggtattttt tttttaagca gcatattatg accccaacaa cataccattt
      601 taggccatct aaactttgat gatcttagcc aaggaagaat ttaatgaccc tac
//
LOCUS       KCLA01000350            1012 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5666upu ultra-conserved element locus uce-3517,
            sequence.
ACCESSION   KCLA01000350
VERSION     KCLA01000350.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5666upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1012
                     /note="ultra-conserved element locus uce-3517"
BASE COUNT          281 a          225 c          198 g          308 t
ORIGIN      
        1 aagctggggg tcttatcttc ctcccttctc tttaagctta ttaaatacat cgcaacaaca
       61 gtgtgctgct ttgttaattg ccattcattt tcaagatgaa gttctctggg aaacaccacc
      121 atcagcaatc ctggatcggc tacagcacgg gaggctgcag tcctacttag caaccaattc
      181 gggtgtacac ggcagctatc atgacaagtg ctgctcattt cggtaggtct tcagccaaaa
      241 attaaaccag atgaggctta cagttgtaat gtttctactt ccagcgtggg gacatgaaaa
      301 ccgaatgcct tcctcgtatc tcagcaagtg actcctgctc caacatcgaa aaaaaaaggc
      361 atttcttcat attctcagtt aattcagtct aaaagtgtca cacttattca gcagcagtta
      421 aaataggctg tgatgagagc atgacaattt ccagctaaac tagaggataa ttagaaatgc
      481 cctgtagcag gcaagtcagt gcttcaattt atttgctgtt tattaccaag tccctgcccc
      541 ttgggtgtaa tgactgtaaa gcagcacctg cagcttccca atgtttgatt tagtgctgta
      601 aatggtgctc agagagtaga ttaagctgga atgtgatcaa accttatttg caatccgatt
      661 atacaaactg ctccttgcac tgaccagatt gaagtaattt ccctatagaa acgttacact
      721 cactttggtg taaaaatgat taacatttgc tgactgtagg tcagcctttc acttccagtc
      781 taattcttta tcaggcagga tgcccatctt tttcttgtgt ttgccacgtt tgtgcaccga
      841 gcggtattta accagtggat ataatcattt tttttttgct gatgaatgat tgcaccccag
      901 cataaacaga tcaaaccatt cccccccagt ttgattgttc agcagtattg acacccttaa
      961 tggtctaaca gagggaatga aggaatttcc ctgttttact gagaacagct at
//
LOCUS       KCLA01000351             325 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5681upu ultra-conserved element locus uce-4835,
            sequence.
ACCESSION   KCLA01000351
VERSION     KCLA01000351.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 325)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..325
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5681upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>325
                     /note="ultra-conserved element locus uce-4835"
BASE COUNT          109 a           55 c           66 g           95 t
ORIGIN      
        1 agaacatcca atattttgct gcattttaat taaggtgtct aaacattatc acaaagaact
       61 gcaaattggt cagagcacgc agtaaggaaa attaagctct aaaggctttt tatcaccata
      121 tttcaggaac caagggtgta aaatgttcta atttgggata tattaaaagc cataaaaggt
      181 ctttcaaaaa gattaatggt actttgcttg gatttaagat aagggcttta gctggttgga
      241 aaagcagggc cctggctaga cccttgaggc attcatcttt acagccactt ggaagatttg
      301 taaaagcgtc tgcataacct caagc
//
LOCUS       KCLA01000352             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5696upu ultra-conserved element locus uce-893,
            sequence.
ACCESSION   KCLA01000352
VERSION     KCLA01000352.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5696upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-893"
BASE COUNT          263 a          125 c          141 g          269 t
ORIGIN      
        1 aaaaatacca accttagaag tgtatttagc tccttttttt tgaagcagtg gcatattgtg
       61 ttaggatttt tacgtcttta aatcaaagta gagatttcta atgtcaatca ttttaaccac
      121 aaacatttgc ttttatcatg ttgttagtct tggtcacttg tagttaatta agatttcaaa
      181 tgtagagttg ccaatcaaca gactaaatgt acctctctct tctgttttca caagcaggca
      241 ccaggagatt caacacagta gttgatagct ggtatgcgat atctgtctcc tggtttatag
      301 cctggtacaa taatgtcatt gccccatgtg gcaaatggtg taagctattg taaaactgtt
      361 tgtctatgtg attaagacat tgcagcagtg tgcagcacca gccaattact tttttaattt
      421 aattatagca gaaaaaagag aatagcataa tagaaattct tgtcataggg aatatgtaaa
      481 atgtaaattg aagagccatg aaaatttcat gcattggcag gctgatttgt tcttattttc
      541 aacttgttat gaagactgag attcttaaat gcaataaaac aagacatagc agtgtttagt
      601 aattacttag ttctacatca aaataattat atacagtatg tgttcgcaat ccactctgct
      661 gcctatgaat gtaaaaatga acacttcagg gccaatatca attttgtctt ttagacagtg
      721 taaataaagc tgaatcttca actttcaaat taaaactgat aaccttgggc aatcagggct
      781 tttataaaga aggggaaa
//
LOCUS       KCLA01000353             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5712upu ultra-conserved element locus uce-6621,
            sequence.
ACCESSION   KCLA01000353
VERSION     KCLA01000353.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-6621"
BASE COUNT          253 a          167 c          123 g          265 t
ORIGIN      
        1 tcttgacatt tatcaaaact ttcaaaataa aaagctataa gaatgaacta tttagtccac
       61 taacaaaagc aaaatgttct tgtctacaac accttgcagg aaacctaaag tataaatttg
      121 ggaaagcacg tttccaaggt cagaacatac cattggttaa aaaataatat acatgcctat
      181 gtgtgctgag cccatttgcc aacctgttta gggttatata caaagagaag tgcaaacatg
      241 ctctttcact ttatcacaac cttattgttt agctttaaat cattgctgag gaaaggcttc
      301 ctgcagactt ttcacttaag tagttgtaac tacaactgca aaacaccgtt gactggtgga
      361 ctccagagac ttgttcatta cctgtcatta aatgttttaa agtttgcata attgatccag
      421 ccaataagtc atcattgatt tatagaggtc tgtgctgaag agttgcttgt taaaaattca
      481 taacactggt atgtgccttt acaatccatt agctgtttac gtacccacag tcctaagatt
      541 gattgacctt ggactgagat tctcatggac tctgttttta aaaaatcttt ttttttccat
      601 tttcttgcac aagtccacag tatagaaaag caatacttca gccctctccc ttgacagcta
      661 tactttgact ttttttgctc tccatcaaaa ctgaaacttt acttgaaatg atgaataaat
      721 aaagcacact ccataaacag ctttccacca ttatttaagc ttgtgagctg tgctctgtta
      781 gtctcctttc cccaccatca gattcaag
//
LOCUS       KCLA01000354             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5742upu ultra-conserved element locus uce-2309,
            sequence.
ACCESSION   KCLA01000354
VERSION     KCLA01000354.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5742upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-2309"
BASE COUNT          246 a          114 c          183 g          201 t
ORIGIN      
        1 tgagtgaggg aagtttattg ggggttaggg agagagcagc aagggagaag agtttggtgg
       61 agagagttgt atgaaaagca gaggaaggga ggatggcaaa tggacagtgt tagaagagct
      121 tggaaaagct cctgtggctt cattgtctct ttaaagccag agaacacaaa gacaaacgca
      181 gttcggcctt tctcccatga tggaaaatgt aaaccattga cacagctccc atgtttaact
      241 tgtttaattc tcattttaaa ttcagtacta taccagccgt gtgaactctg aagatttctt
      301 tagtaatcca ttttgtagtt ccgaatcaaa aacaaagtga aaaggtctga cacaatttgc
      361 ttttattttt aggcaaatca accctggtca tagttaataa ggggattaca acccagacta
      421 ggtctttaca gatgtaatgt aaatcaaggg cagagtataa agaaactgat cccttttgat
      481 tgaagtatgg taaaaaggca tagagaaact agcagcagta atctgattgt atggcaataa
      541 aaccaccatt ttctgtcttt cagataaaaa taatgtggta aatccatgca gttcataaga
      601 tgtaaaggga gataaagggt gatgccatgg caacatatag attagcttga tgttagaaat
      661 gacacgtctc tgaaaggggt gttggaaact aagggccttg ctccgggctg taaggtatta
      721 tgtgagaacc gcacagaact tggg
//
LOCUS       KCLA01000355            1040 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5758upu ultra-conserved element locus uce-7903,
            sequence.
ACCESSION   KCLA01000355
VERSION     KCLA01000355.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5758upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1040
                     /note="ultra-conserved element locus uce-7903"
BASE COUNT          244 a          264 c          256 g          276 t
ORIGIN      
        1 ctgccacatg ctgatgtaca agagatgcct gtcctctaaa aaactgcctg tgcagggaca
       61 tcagggtatt tccaagctct atattctttt attatttgta ctgctgcttt taatgggaag
      121 aaataactgg ttattgtgat gcttctgggc aaataccttg tacttggaaa aatgagcaaa
      181 catagccaaa tgacagcgta aacaacgcgt tccgagctac ccgggacatc gcgctccagc
      241 accctgcgtg ccgacatctt ccctcacgaa gccttgtcaa agggttaagc ctgcaaattg
      301 ccttgctgtg cttctgggac agcatgaagg atggctgcca ttgccacggt cagatatgac
      361 agcgccaatt tgatgtgctg ccatcaaggg ccttctaaga gccgagcgcc ctgatggttt
      421 tgtgatgcga acagtcgcat cgcaaaatgg ttttcctctc ccgctgcctc tgcttccatc
      481 tgctgctggg ccgaggcaca gccggctgcc tgcctgtcac agcatgtatt aaaattagct
      541 ggggaggagg cactcagttg tgctaattac attttaatca ttggaaatgt gttggcaaat
      601 caagccttga ttgccatctc ggagtctgtc tcctccagca gagcaaaggg gctgtcggca
      661 ttagctggga cctgctgggc ccagttctct cacagaagac agaatatggt gcctgctggc
      721 ccaccaccga gactgctttg gcacgttatt aaaaagccac aaggcttgtt tcaaatcatc
      781 actgtgtgag ctctgctcat tcccacatcc ctgggtattc cagccacttg gtgcgtttaa
      841 ctctatcttt agtttacctt gtgggctcaa aaacaatttt gcatgcgtgg gtggaggaac
      901 cagagctttt ttgcagctcg tagggttggg aacagagccg gttgtcaaaa cgccttcgtt
      961 gtcagctgta atgctgcacc gaagagcatc ccagaatagc tggaacttgc acagccccca
     1021 ctttatcatg gcaaggttcg
//
LOCUS       KCLA01000356             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5788upu ultra-conserved element locus uce-2335,
            sequence.
ACCESSION   KCLA01000356
VERSION     KCLA01000356.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-2335"
BASE COUNT          255 a          190 c          143 g          278 t
ORIGIN      
        1 agcaatctga atacattttt tccatgttaa aatcttcttt tgacaccgca tctgtcacac
       61 agccaacgtg tctgacccag atgtaccgcg taagccccac agattatttg tcagacaaat
      121 tctggaacct aatatttggg tcttttattt aattggtatg caaacgagga aacaagacag
      181 catttgtgct cgatacagtt gtcacttcag attctggtaa cgttcattat cgtgcttaca
      241 gatttttttt tacacctaac atctgccaat actacctaaa ccgcaggaag ttgacaaacc
      301 tgtgcaaact tcctctccgt ctccctctcg ctttctgtta tctgttccat gcacactaat
      361 tttgtgcatc tgaggcctct gctcgccaga attatgcctg cttcctaaca cctctgcctc
      421 cagagctttg gatttgaaat tgaacagaca cagagccaat ttatcatagg atgacatgtg
      481 tcatgttcat ggtataacca gagggaccta ctgcatgcac tgtatttatc cttttgttgt
      541 caacatggac aaagacaatg ccagcaatag gcagctattt aatttttaaa acacaataca
      601 tatacttagc tcttgttctg ttagagttag ggtttttaaa tgtagtacta gctcattctg
      661 tttaacacca gatttccttt gtcagataat catctgtctt tcaagcatac agcatattaa
      721 aatatgtgag caccaaatac caacgcatta acagtgagtc ttcaggaaaa gccacatgaa
      781 aaacattttg tacgtgcaag taagaaatta taatcagatt taatgacagc ttacacatat
      841 ttatatgctc taatgtcatt ggtagc
//
LOCUS       KCLA01000357             994 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5802upu ultra-conserved element locus uce-7340,
            sequence.
ACCESSION   KCLA01000357
VERSION     KCLA01000357.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>994
                     /note="ultra-conserved element locus uce-7340"
BASE COUNT          311 a          218 c          191 g          274 t
ORIGIN      
        1 ataagctaac ttcctaaata gcaattttaa tgaattatat taatctactg cagagaaagg
       61 agacagcccc cattcaccag agcccacagc tcttaggcaa gcactgaagc actttagagc
      121 tctgccagcc tcctataacc atgaagtata tctgacagta caaagacaga aaaaagtcct
      181 aagaggtaaa ggccccacac ctgaggttta tcttacatca gggaccccat tctcacacag
      241 gacagaagaa attatcacta aggaaaccag ttttgcccca tcttgtgtct gcacataaaa
      301 cacacacaca gagcaaggag aggacatgcc tcttgattta ccatttccat ttatagcaag
      361 caacccataa aaaggactcc tgtgttttta taagatgacc tataggaatg ggagcagtgc
      421 cagcattacc tgtatttcta gcatgcatta accgtggaga gttttgtaag gccttatcaa
      481 catcatctga agtcaaatgt ggaagaggag ctacaaaaca aaacaaaaag caacaccaaa
      541 atgaaaaaaa aacttgtgaa tgaagtttta aaccatattt tcccctgaca ggatcgttcg
      601 aatgcgagtc tatcaacagt tttagcctgc agtttagagg gaggtgtgtg agctgcagct
      661 ggaactagcg cctttgttta tccagtgccc tgactgatta ttgacggtgt gcgtgtggag
      721 caaactgcac cgcactggtg ttgcaaagct tgttggtttg ttatttaaaa tccattttca
      781 tttcaacttc tttaaactga gacaaacctg caaaatttcc tcaagcttag ttgaaagtcc
      841 tctagccagg aatttcctag ccccttcttc ccctttgaag tgctaggcat gcactacaag
      901 taatttgcat ttagacttta gggactgtct ggttttccca taaatttaca gaccttttat
      961 ttgattcagg gaaatcttgc tgatcctatt caga
//
LOCUS       KCLA01000358            1261 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5818upu ultra-conserved element locus uce-671,
            sequence.
ACCESSION   KCLA01000358
VERSION     KCLA01000358.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5818upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1261
                     /note="ultra-conserved element locus uce-671"
BASE COUNT          343 a          304 c          277 g          337 t
ORIGIN      
        1 catcaggcca acttaattcc aaattaagtc tagctaaagt caaagaacca acaaaagcat
       61 caactataaa caaacacagc ttacttactt gcagtactca tgacattcct tcccaacgta
      121 ttagtattgt tatcgctgct acttcggctt aaattcatgt tgtttgtggc attggtacgt
      181 gctatgtttg ccactctgcg tacaaaggac tccaggctgg aagtttctcg agacgacaag
      241 ttaggaacac ttgcactaga gctcattggt gccccagcag ccaacaatga actaaccgag
      301 agtctgttac ttgctgaaga gcttagtggt cgttgggaag ctgcttcttt gtttgtcagt
      361 tcggagactg aactcacgtc aggagagctt acgctaacaa tccccatgga tatagcactg
      421 gactccccag gagcacgtat ggagttatca gggcctaact tcctctctgc attctcgttt
      481 cccatgtccg ctgttaaggt gctggtgctt gcactggaag atgaccctac ttcagcctga
      541 ggcacgctat cagcggaaga cagaacaaca attggttcat ggacgtcagt gcctgaaact
      601 atattttgct ccattacact ttctgatctc cgctccattt tggtcgaacc caagctgatg
      661 tcgctgctac tggccacgct acacacagaa ctgctgcttc cttttctact tgaagagcct
      721 gcagcagcag tcgtcttgtc aggacagttg tttttcacca agctgctcca tgactgcgtt
      781 gtgcctgaaa cagtggatga aacaggtttg ggtgatgccg ctgaatcagg gtcgtaccct
      841 ggtgcaagct tgaggtcaaa ttttccttct gcgcccatac ggtaagagtt agagccacca
      901 gcatcccagg tgacatcaat ccagcctgga aagggacagg agtttgtgag atccagcaga
      961 aagcagacag gagcgtgtca gacagtagct ccacaatgtg ggatcagctt ctcctaaggg
     1021 ctgcatgtct gaattaataa aatcactaaa taaccctgaa tactaattaa aaaggaagtg
     1081 tttaaatcta aacaactggg tattttaaat gttaacactg aggcagcaag tgtgaccagc
     1141 ctttatcttc agggtcccag aatccagcca aaagtaaagt tccctttaga gaggagcctg
     1201 acctactagg atctctcacc atcttatcat tttctaagaa acatgttaaa attgactcgc
     1261 t
//
LOCUS       KCLA01000359            1031 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5834upu ultra-conserved element locus uce-5196,
            sequence.
ACCESSION   KCLA01000359
VERSION     KCLA01000359.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5834upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1031
                     /note="ultra-conserved element locus uce-5196"
BASE COUNT          341 a          182 c          190 g          318 t
ORIGIN      
        1 ttcataacaa aaatattgct tacttcagac gtttcaactt gttaagttct atttattcag
       61 ctgtattttt tactaaggta ttaagtgcac agcaaagtta ttaaataata aatttgtctt
      121 ttagaatgac aaaatgcatt gagtgatgag tggttgaatg agcaaggtct gtattgcagg
      181 cttttccatt aaaggtaaca gacacatgaa gacacaagtg aaatgaggtc ccaacatcaa
      241 gcacattctg tgaagactaa aggagatgag tgtttctaaa aggaaagcag gaaaagaatt
      301 actaggaata gagaaaaaag atacatcaca agtacagtct tttctctaag agcattgtgc
      361 atattactct aagatagctt ttcacgagca cattgccgag taacctttta tgatctaatg
      421 aaagaagtcc atacctttcc tgatccctcc atcagtagca cacgtgtaat cacctgttgt
      481 cagtaggaaa catgttcccc ctcttctgtt tttgtctctt gtactagagc gtctgatggg
      541 agggagcctt tcaccgggtg agagtggctg ctcacttcct gcactgtctt cacctgataa
      601 cactggttaa agcaccatgc ccatttacag acaataatga atgaggaaat gagacatcac
      661 aaagagctta tgctgaatgc cggatattcc catcactcaa aaatggttat aaggtaaatc
      721 attataagaa aacaagattg caattcacca tcaatcagta ccaaatggca aagagtatat
      781 gttttattca agagcaacgg atcttttgac tgtcctttta aatatcatat gaagttttga
      841 taaattaaca tgaaattaga atcaaatcaa gactcagtta gctgcctatt ttggaatgaa
      901 atgttttggc gtacagtgag ctctgggttt ttaaaacaag tatttgctat tttggtatcc
      961 ttttttgata aacaagagga cacgtcagca atttttctta aaacatgtta tgttttaaag
     1021 acaatccctc c
//
LOCUS       KCLA01000360            1052 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5849upu ultra-conserved element locus uce-2142,
            sequence.
ACCESSION   KCLA01000360
VERSION     KCLA01000360.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5849upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1052
                     /note="ultra-conserved element locus uce-2142"
BASE COUNT          307 a          227 c          182 g          336 t
ORIGIN      
        1 catgagtccc acttcttttt ttcagtctct tagactccaa caaactccca gacctggaga
       61 ccactttttc agatccacca taaagagcca gcagggacca ctgtgcaaac cagtgggatg
      121 gagagaggaa aataaacagg atccaaagaa catttccaaa cagtgatcct gctgaaggtc
      181 tcaatagaaa acatttgtca tgaagtaaca cgaatttgca taattttgga gaatactttg
      241 ttttccaagc cgttctcttt ttcacctgct taggagttga ccatgtatgg ctttagttaa
      301 ggtttgttga tggcggctca tgtttaacca actgttttta atttacaaat taaacttgtc
      361 agaagtagaa atccttccct tggaaccttt ccaatatgtc aagaattaat tctaatgaaa
      421 acggcattgc ctaaatgcag gatggccagt tacttacttt atttacacaa agtccttctc
      481 agtttctttg ataaaagcag ctaaatcttt ttcctctttc atgttttgtc agcacttgat
      541 tccttttgtc ccctggctat ttgcctagct gtggacaata aggcaggaag aatagaagca
      601 gattgttgga atggccctca ataaacctaa ttatgacatg ttgactgcac tcaccatgac
      661 atattcagga gatccaggct tattcaatta cccttgccag gtttctcttt cagacctcaa
      721 gttatccttt gactgtttgt atttctgaac agtattcatg ttcattgtga aagaaaatcc
      781 cctggatttt gaggggtttc taagttgatg ctgttattgt agctaatttt tattaactga
      841 atgataacat gataaagaaa tagacttttg ttatgtaata agaacaaatc agtgtgtgct
      901 taaagttaca cctttctttc cccctttacc cccttgcaga aggctgacat aacccatagc
      961 ttgagtcaaa cacttctctc gacctgcatt tccattccaa ccgcactaac acaacctcac
     1021 caaaaggttt ctgcaagtcc tagagcaaaa tc
//
LOCUS       KCLA01000361            1212 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5864upu ultra-conserved element locus uce-3619,
            sequence.
ACCESSION   KCLA01000361
VERSION     KCLA01000361.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1212)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1212)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1212
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5864upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1212
                     /note="ultra-conserved element locus uce-3619"
BASE COUNT          357 a          239 c          260 g          356 t
ORIGIN      
        1 ccatccattg gtacaatgac aaggaattaa atgtcttgcc acctaagtta taattgctga
       61 aaatgacaca acctatataa acatgcagtt gtcatagctt ggatccagta tgcattgtaa
      121 gaaggcttga tttctgtagg aaagctcatt gaggagcaaa ttatccaatc tatttggaat
      181 tccattgtgt aacatcttgc tgtctgggag tgcttctcaa tgtcttaatg tccaccttag
      241 atgaaggaac tgttttttct tgaatagtgg tcaaatatgt aggcttttcc ctttcatttt
      301 ggttgtcaca tcacaaactt tgatgcatgt aacatgatgc agtggttgaa atttgggggg
      361 gaaaagcttt gaagtcaggt cacatttgct ctctatgtaa aatgatgagc atccacttgg
      421 tcaaatagta ggaaaaggcg cctttttctg gccttggttt gaaatcgtgt tgaaatttga
      481 tggacatttt ttgtttccta aagaaatact tactggttgc tgtaggtgaa gatggctcac
      541 cttcagtgga tgtagtgatg ggtttagtat ctgtcatggt cagggtcaca ggtcgcaccg
      601 cactgtgatg gggagagggt gccaaaactg gagtaaaatg gccaggcact ttccctacta
      661 cttgaccact gctgttaggc tacaaaacaa aaccaaaaga atgccttgta aaacacatac
      721 attgcgtttc aggaacctac ctctctgtct tagggttttc aaaatgccca tcatcttagt
      781 acctgtgtgg tgcaaggtgc tgttccaagt aagctatgaa tttctatgtt atttccagca
      841 ggcagatccc tccacagata gctagtactt ttcagtaagc tttctttctg gatgcagtgt
      901 gcatcagttt caaaacatgc tgttcacaca gtggctgcaa gccacaataa atcccacaac
      961 agcaggatta aactgaccag gcataggccc taatgtattt aaaaaaaatg aataatgcaa
     1021 aacctctgtt ttcacacaca gtaccacact ggcttggagc acaaccaaga cttgaccaca
     1081 gctgtccaca gagattacgc atactggaag gctaactaat aattaacatg tttgggagtt
     1141 ggggagaagg ttaggatatg atgcactaca atgcacacat cataacatct ggctgaaagc
     1201 catctacgaa aa
//
LOCUS       KCLA01000362            1195 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5879upu ultra-conserved element locus uce-334,
            sequence.
ACCESSION   KCLA01000362
VERSION     KCLA01000362.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1195)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1195)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1195
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5879upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1195
                     /note="ultra-conserved element locus uce-334"
BASE COUNT          335 a          267 c          240 g          353 t
ORIGIN      
        1 acctgaatag cagataaatt accaaatatt tcacccctta ttggagctgc ttctactggt
       61 gccgcagccc ctttctgacc agctttgtgg cattcgtgca cgtgtttaac aggtccagtt
      121 tacacagcac gttaaggaac gatcccgtgt cagtcctaag gactctgtac ttctgtggta
      181 ggaaactgag gctcagcttc agctgtgact cctgcaccta ttcatccaag tcattaatta
      241 tgctgatgag gcctttaaat cctccataac aaagtggaaa agcgaagttg caagaagacc
      301 ttcgtgtttc gataccccat cgttaagatg cgttgtctgt caccaattta tccggtgtag
      361 gcatttaact tccactcact tcagctgaat gaagagcgtt tactttcctc ataagagggc
      421 agtcagatac gtaccaattt tgttttaacc gtggagagga gggagctggt agccgagcgg
      481 ggaagggatc caggaaggac taatcaatca ctgacagatt acagctaaag ccacttccat
      541 acccattaaa gcaggacaaa tgcagaattg caactgaaca acttctagtt ttaagccaac
      601 agtgggactt cctagttatt tatcaaagtc attgctggta agcagcatgc ctcactgctc
      661 gattgtactt cacagcagac agagctgact gaagcttcag ccatgaaaga agtgtttatg
      721 ccctcagctg tggtgctgtc agccctctgg aatttactgt aaatcacaca gcttttattg
      781 caagatttag tagctgatcc tctgtgggct ctattcactg caagcttgtt actatttgga
      841 tgttagcctc agtccataaa gggacttgct acacatcatc aaacagcagc ggaaaaccaa
      901 aggtttcatt tttcaatttt ctaaacccta aactcctcaa cagtcattga atttcattgc
      961 agaaagtgga agtctacttt attatggtac tcaatttccc caatggagtt atacacttat
     1021 aacattactt ttatttccag tgacaggatt tggccatctg tcctggctgt aattttataa
     1081 cacactggct cgtttttatt ttaagggaat tttgagatat tacattttgc tcgtgacaaa
     1141 attgtaatgt agatataaag gccacaataa tgctaactac atccagggcc gccta
//
LOCUS       KCLA01000363             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5894upu ultra-conserved element locus uce-5932,
            sequence.
ACCESSION   KCLA01000363
VERSION     KCLA01000363.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-5932"
BASE COUNT          233 a          180 c          138 g          192 t
ORIGIN      
        1 gcaattacac attaatcccc tcagcccgaa cagcaggcct atgaagaaag gattgatctc
       61 ctttaatgat gcaaccctgg caccacggtt ttatttttca caacccggtg cagttaagaa
      121 ccccactgtt attatgaaaa tttcttccgc aaaggagctc catcgcatta ccagtgcgcc
      181 aattcatcac gatgcgcctc gctcctgctc atcaacaagt ttgagtgatg aaaagatcca
      241 atattatcct gacagtactt catgcacatt ctcaatcaca cattattaca gcatccatat
      301 taattttcac tgacacgcgt cctcggcctg ttcaaattag gcaaaccaac gagggggagt
      361 tgatgaaata ccagcatagc cacagctcat tgcattccaa tttgcatgca aatggtttat
      421 caggaaaatt ccattcccag caaccagcaa gtgaaaaaca accgtaatct acacttcagg
      481 gccaccatac agagcttaat gaatcgcaaa gagagaagga agtgacagac ctatgagagg
      541 atcgatttcc actggcagct ggtaaggctg gtcttgaaca gcaccttgat gagctggaat
      601 tcaggagaga agattttaaa actctgcctt ttaaaacatg tgaagccata tacatttcat
      661 aaatcaaagt tacgtccact ttttgtaagc atagtagatt cccctgccgc cgtggactta
      721 ataaaaataa ttccaggtgc ttt
//
LOCUS       KCLA01000364             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5909upu ultra-conserved element locus uce-6284,
            sequence.
ACCESSION   KCLA01000364
VERSION     KCLA01000364.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5909upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6284"
BASE COUNT          103 a          138 c          139 g          149 t
ORIGIN      
        1 ctccccgctt ccctcctctc tctgaaagtc atcaggccta gcgaggtctt ctcccactta
       61 tgcagctcat gaatatttaa cagcatctgc tctggaggcg ataaagccta ccaatccttg
      121 acaaatatgg cctaatcttt tcaatttcgg ggtgcaaata ttccttccga gtcctgtttg
      181 tcacctagat taatgactct gcctcccata agcctttggt gctaattcaa gtggtggcta
      241 ccaggacgcg ccgtggcgga tggatgctgg gacacatatg aaggagagat tactcacttg
      301 agggcccttt gctgcagggt tttgttcctc cattggcagc aggaatgagg aggggtgtct
      361 gtgcgtttgt tgttgcctct ttgcagctga tgatgaccca gtgcaggaag gggaggcagc
      421 catgagaggg ctgatggttc ccctctttct tctgtttcac ccatggatgg tgtgtggtgg
      481 gagacacggg cttgtcccca gtccttacct cttgccacct gacgcagcc
//
LOCUS       KCLA01000365             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5924upu ultra-conserved element locus uce-3008,
            sequence.
ACCESSION   KCLA01000365
VERSION     KCLA01000365.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5924upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-3008"
BASE COUNT          233 a          158 c          144 g          234 t
ORIGIN      
        1 gggaaggact taccctgcag ccaggatccc ctccacggct gggagaactc gttttgagcc
       61 ctaatcgctg ccaagaggaa gcagctcatc tccccctaca gcttctaaat cgcgtctgtt
      121 ggatgtaaat agctgcaacg gagagacaag tgtctggagg tgatggcgta gcgctcttac
      181 caacagatga caatcatgtc ttatggtttt tgatttgaca gaatggttca tttcatcagc
      241 tttctagcag cccatttgat tcaatttccc tctgcagtgt tttactggaa atgacaaaaa
      301 cgttccttta cataaaggct gcgagtgtgt gaacgaacat aaacgcgccg cgctgtttac
      361 atactaactt aattgtaatt taaatgccct tttcattcca taaatatagc cataggcttt
      421 tcatttcctt caagccttca gctcagagag cagtttatat gtaaactgga gtcagttgct
      481 tcataaagtg aatttctgga ggaaataata tagtatatat caaaatctag ataggtaatg
      541 ggaaattgat tgtgacaata caatattaga aacacatctc cataatattt tatttattac
      601 actttccacc tttggctgtc aagggaaaat atttcatctt gcaccgcgaa ctccagtctg
      661 tagagatttt gacctcaata ttctcacaca aatgaatata gtgtgtaagg tagcacaatt
      721 ttccctgtgt aaaatcatgc ataaaaaaca attcatttaa agcatctaa
//
LOCUS       KCLA01000366             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5940upu ultra-conserved element locus uce-557,
            sequence.
ACCESSION   KCLA01000366
VERSION     KCLA01000366.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5940upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-557"
BASE COUNT          246 a          125 c          141 g          253 t
ORIGIN      
        1 ctcagcttgt taatctcaaa atatacctct ggactaagtt ttgccattaa tttcagcatt
       61 tacagaaaaa taaaatacag ctattacggt tttcctgcta actgcaattt catgaataat
      121 aagcagagtt tgatagagtt ttgtttaatt taataaaaag ctctgcagaa actaacggca
      181 ctaggcatac tgttttaatt ggcatgatta cgttttaatt ggcatgaaaa aaattaaaga
      241 caaggatttt aacttctaac aatggtaaaa tagagggata tggtttttaa tattactttc
      301 atctaaggtg aacagtgtgg aatggaaata cattagaatg aaatgtcagt ggtgcgtaca
      361 gtttaatctg tgaaattttg tcccctgtgc tgaatattac tctgtctcaa ttgcatatta
      421 aacaacccta tcaaggcagg cattggcatc tgctgtgctg acacaaattg tgaattaaat
      481 gaaattgatg tcctctgtcg tatatttatg aagacggacc attctctgaa gtattctgtt
      541 tatgaagaat ttatgattgc aaactgttcc agaacaaaaa agtggcaata aattcttttt
      601 tgtgacccta ccctccaagg gcattgattt cacctcctgc tgctactttt gttgcagcat
      661 aaaaacaata gctagcgctg gattccactg agggtcttca aattatcaat atttgctcca
      721 tgaaaagagg aaggtgttgc caagaaggca tgtttttcag ttatg
//
LOCUS       KCLA01000367             861 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5956upu ultra-conserved element locus uce-2459,
            sequence.
ACCESSION   KCLA01000367
VERSION     KCLA01000367.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>861
                     /note="ultra-conserved element locus uce-2459"
BASE COUNT          243 a          152 c          156 g          310 t
ORIGIN      
        1 atccagttgt aacacattag ttttgtcagt gctgcttgat ttttactttc tttttcaact
       61 tttcatttaa agtagaattg gagttctttg tttgacttgc ttgctaaggg tttttaaaat
      121 gtaaatagca gtcttataac tctagtgcag agaggacagt ctgacctact cctagaaaag
      181 aaaacaaaac tgagaaaggt ggaacacaca gatccaaggt ttcccactgc atagcaatgg
      241 atatgacctt taatattgag gcttttggat gaaatttaag ttggcattac atttttctaa
      301 taaattccct gctgaatctt aagatttttc cctttggata tacttcacta aggtcacaat
      361 aaaacaagtg ctgtctgtgc tattgtaatt gctctcagta gtctgataat attattgcag
      421 agaagtgcca gctactgtgc ttttatttct ttcttcaagc actcttcttc ctagatgctt
      481 cctccccttg ctcacaagtc tacccaaagt aggaagtgga actggtttag atgccatttg
      541 tttctcatgt taacatgttt ttgtagtaat gtgttcccag gtctcttaaa gggaataaat
      601 gtagactgta tcattgcaga gtaactgcaa tattcctatt cttaattcct atccaacctt
      661 tatacattag atttggtcac taattacttt aagcattaca tccttaggag tatcaacttg
      721 gtttggtttg gctgtcttct cttaaggttc tagaaaagat gtatagcacg aagaatttct
      781 ctttggtgtg tagagagaca ctgaatagcc actgttgtgt ttcataaaaa tgacaaattg
      841 cagatcatca gacatgtttg g
//
LOCUS       KCLA01000368             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5971upu ultra-conserved element locus uce-5369,
            sequence.
ACCESSION   KCLA01000368
VERSION     KCLA01000368.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5971upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-5369"
BASE COUNT          236 a          194 c          161 g          225 t
ORIGIN      
        1 aaacagcaag atcaaaacac gatgcaagtt aaagtccctt gaaaggatcc cagcaggagt
       61 tttccttttg gtttgtgcag tacacgattt cctctcaccc acaaaaacca taccaagagc
      121 gtgcatgtgc cgctaacact aagcagcact tccttaatca ctcatttcca acaatttatg
      181 gatgatcagt ggcaaaaacg agcaaaaata atgaaagcgt gcaatgaaag ctcgccgaga
      241 caaaccggcg tggacttcct actcactcct gtgtctcttt aagatggggg cctgacacaa
      301 attagccact gggaaaagta gtcatctggt cataaaatac agtacagggt cacttttatg
      361 taagtttgcc aaaagggaca taaaccagga caatctcaaa ctgtgacaca ggatagcagt
      421 atattaaagc aatctttgtt cctcctccat tgtgctgtca tgttgctcgg ctttatagag
      481 gtcctgagca ccggcactgg cctcttcgct tccacctggc ctacctaatt aattaagcaa
      541 ggaagttacc tcacattttt gtactgtttg tttttattat catgcactcc ttttgatgtt
      601 ccaggagtta acctcttaat ccaccgactg tgtgtgctgt gctccgacca gtttgggatg
      661 tctggataat ttggataatt ggtcaggatg ttgctgtcgc tcacgttaaa ctttatgccg
      721 tgacttcaag ttcaaagatc agtatgaagg taaaatactt cataaagccc atttaaaacc
      781 ctacacccgc gacaacgcaa cagccagttc ttccag
//
LOCUS       KCLA01000369             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 5986upu ultra-conserved element locus uce-2089,
            sequence.
ACCESSION   KCLA01000369
VERSION     KCLA01000369.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="5986upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-2089"
BASE COUNT          253 a          168 c          171 g          283 t
ORIGIN      
        1 taaggtcttt ttaagtgtta gggaagacag atgaatagtt gtgagcaacc ctaagaaatt
       61 gtgcagcatt cggcgcgtct agctcatgga atggtcacag cacattgtcc tccccacacg
      121 taaataaata ttcaggatct caatgtgggt gcttggcacc gtgtcacgga agttcacagc
      181 agaagctaac actatattag tgataactaa tacaagatga tactctggta taatatggag
      241 cagctttctg ctgtcagcat catgcatctt tatcaggaat acatcacaga cacaatggaa
      301 attttccata tcctttaaag ttttgcattc tgtatatttg gttgttagac aaatagagca
      361 agctttgctg acttcatttt cattcttggc agcatgtttt tatcataagg cagatagtca
      421 ttaatttaca gaatcaacgc tgggaacagc ttttgtgatc tcatattaaa ttttcccctg
      481 aatccgcccc ttggcaaaaa ttactcacat cgttaaaaaa tatttaatta ggctgtagtt
      541 tatacccagc tcactgggga aatgttggaa ttaatatgat ttgcatgaat tctgtttctc
      601 tttttctgtt agagattagt tttgaattca gttcagaggg tcgctgacac tgccaaggac
      661 tcacaattgt gaaggtcaaa caggtagcaa atacttcccc tgggtagctt ccctgaaaag
      721 acagctcaaa attgctttta attatgggtt acctaaaagg ccacttgctg tttttatttt
      781 tccacaagtc tctggaacat tatgtggctg ggagttgtag gtagaccaca tcagttcaaa
      841 tcaaaatcag cctaagtcat gttgtccctt ctttt
//
LOCUS       KCLA01000370             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6001upu ultra-conserved element locus uce-394,
            sequence.
ACCESSION   KCLA01000370
VERSION     KCLA01000370.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6001upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-394"
BASE COUNT          224 a          181 c          230 g          232 t
ORIGIN      
        1 tcctgaaaag gacatagcca cccatgagca cattccagtc atgtgagctg tcccaccagg
       61 tctctgtaat tctcaggctg gagagggttg gttttgacca tttcaaggct gcaagtgcgt
      121 ggctttggat atgtgaaagc ctagtgctgc ctgggtgcag attccactca ggtttgtaca
      181 ggggtttgaa aacgcagagc tgcccatttg tgggacctgc acctcagctg atcctctgct
      241 ccaggagggc gctgccccct ctcatcgcct gaccctattc tcttgagctc agtgtgaggg
      301 atttggagca gagagggaga gtaactgggc aagggaggag gcgagaaatg aactgggcca
      361 atagtctttt agcaggtaca tcttggtttc tcaagtgccc atcgtatcac gccaactgct
      421 cttgaagagc cctccattta ccctctcccc taattaaatg tgcacttcat taatgtaaaa
      481 tgggagttta atgctcttgt tgaaaatctg aagaaagtgc agtggctttg cgaaatgctt
      541 aagcatcatt gcaaatcaga ttagggacca agaaaggcag taaaattaga atgataatgg
      601 ttggtgtggc ttcctgacag gcgtgactat tcagggatca atgggatgga gcgcagcttc
      661 cccagccgaa agcaaaaggc agggacagac gtcagcctac agatgtggct tttggaagct
      721 ctttcaatta gtttaatttg gtaaatggtg gggatttaga ggttcttagc cagtcataca
      781 agacaagaat acattgaact gtttttcgct ttttaacata aaataggatt gaccacattt
      841 gcatttttta acgccggggt ggggagg
//
LOCUS       KCLA01000371             937 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6017upu ultra-conserved element locus uce-4128,
            sequence.
ACCESSION   KCLA01000371
VERSION     KCLA01000371.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6017upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>937
                     /note="ultra-conserved element locus uce-4128"
BASE COUNT          288 a          223 c          192 g          234 t
ORIGIN      
        1 ctcaagcctg tgtcagaggc tccctacaaa aatgcaaccg cttctggtgc cccatatggc
       61 agcaatctcg tgtcagcaac gctccacaat agttttttga aagaagaatg aaaagcaagt
      121 tctctgcatg aaaccgcaga gagatttatg tcacaggagt acgcaaccca tcattaccca
      181 aaccggaaca aaggcaggac atcagcactc aaattttatg ggaactttag cagcgaaggg
      241 tcacggattc aatgtgatgt ccaagcaaaa tgccagttcc agcttgtaca atgtcatcag
      301 acagacaatg cagttttgct gagaaactat tgatttaatg ttacggaagc aaaatactca
      361 gctacgagga tccattctac ttggatcctt tgaccctggt ttatcccgga gttcaaaccc
      421 tgataatcta tgtgcttgaa gctcatcttg gcggataatg gaaaattctg ctccatttcc
      481 tctgggactt cacgctcatt agtcacagca taccaattaa aagctttgtt agaaacccag
      541 aggaatgtga cacagcacat gtacaaacca ggaagcttca ttcacgtcta acatggatga
      601 atggctctgt atgcaaagcc aagcattgca ttagcaagtc gtgtgcatca gcgggcaaga
      661 tcaacaaaag atgtgcaaga atttggaagt cagcactctc cgtaagcaat ggattttcat
      721 tcggaacaat gacagttaca gtgttttcca catcctactc cttccttcta cccaaaggtg
      781 acgtcaaata ttttagaagc gatgtgttct tccctcaata ctttggcaat cagctagtag
      841 gaaataacta aacatcgcaa ccagctagcg actggattcc tttcacaatc atcagggatg
      901 ggaagggacc tgggaagatc atccagtcca acccccc
//
LOCUS       KCLA01000372             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6032upu ultra-conserved element locus uce-697,
            sequence.
ACCESSION   KCLA01000372
VERSION     KCLA01000372.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6032upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-697"
BASE COUNT          117 a          106 c          149 g           93 t
ORIGIN      
        1 ggaaacgggg gctgtttgtt tcagcccctc cgcgcgcaga gcgaggatga gaacacaacc
       61 cgtttcctta ttaggttcag gagtcaaagg actcagccag gagccgcagg cttcaagagc
      121 agagaagatt aagacatata ttggattcat gatggagggc acggggttca ttttcaaaat
      181 aaaacagaat tttattcata ttccttttaa aattcagatt gccatttgcc agctgacctg
      241 tgacacgcca gcgcgggatt acactgccga cgcgcagccg gtgaggggct ggggggctgg
      301 gggggctctc tcaggatgat tcctggtctg gcagcacctc ctcacaggga gaactcgtcc
      361 ggacggctga gggtgcaaac agggacaggg gagggtactg ggttttaaca gggagagagc
      421 gcgggcggaa cggggctcaa acatctacga gacagagctc agcag
//
LOCUS       KCLA01000373             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6048upu ultra-conserved element locus uce-7452,
            sequence.
ACCESSION   KCLA01000373
VERSION     KCLA01000373.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6048upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-7452"
BASE COUNT          233 a          152 c          153 g          232 t
ORIGIN      
        1 gaactatcag tttgattatg acgaagaggc tgcctgtgat gcacaagtga catagccagt
       61 aaagtgcttt cgtaggttgc aactgacttt tgtggactgt ttatctcgtt taaacagcac
      121 gagttaattt gaggatttta cagtattttt tcccatttac aaacaggaat gccgtggggc
      181 aaagcaatta ctctgatata gtgttttcac tgtgattgag cataaagatg taggggggtc
      241 tcaaaaaagc agtaacttaa caaactgtgc tcctatccac agacagataa agtacctact
      301 ttgctatttc aaagagttta cctccaggca gcagcacaga gcaaacatca atcaacgaca
      361 tgtgtctaag atgagattga tgtttactct cacagctttt catcttacat ccaataaatt
      421 attcttcctt caccaaaatg cctggttaaa tttcattttt cactttgcag tatcactttt
      481 aaaactttag cttccagcaa ttttaaagct aggattcatt gacacttcag cttttacagc
      541 ctgtttatga tttgtattaa ccatgaaaca ctacagtcca aacatgaata tgataagggg
      601 aagctgcgcc gggccggccg cttgcgcagt ggcaggtgca ggatggaaga tgcaagattg
      661 ctttaattat ctgcctggaa attccaagtc tgcaggcggg agctatattt tcaggggcag
      721 atatatcaca tctaccaaaa ggatgcatat atacatataa ttcctgcaaa
//
LOCUS       KCLA01000374            1057 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6064upu ultra-conserved element locus uce-1828,
            sequence.
ACCESSION   KCLA01000374
VERSION     KCLA01000374.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6064upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1057
                     /note="ultra-conserved element locus uce-1828"
BASE COUNT          271 a          281 c          213 g          292 t
ORIGIN      
        1 aatggcacag cttcctaaag accggtacct gatttcctct tctgtgacag atcaggactg
       61 ctaagcctgg tccagctaca ttgtggaggc tgaagaaagc cagagacaac ccaatatgct
      121 cctctgtagg gctctattga gaacagggtt tggcctgtgc cacataaaga gaagaaacac
      181 ggtctgggac ttgctgggct gtttctcctg ctaacctcac gggggacagc acagcctcac
      241 tctagcagcc cactcctcac tcaaaagtag cagcccagag cctgaggagg acagagcttc
      301 atggatcaaa gtgcacctga tggctgcagc ccactctgca gacattcccc tgcctgtctg
      361 ccctgctgtt ccctcagcac cgctcagcta atttctcaac taatcccaca tttctctgat
      421 gattactttc cccaaaactg tctcagaagc ccaagtgctg cttcgcctcc agacgaggga
      481 aaagagatgg cgaacagctt tctcttgatt gtgtcgatgg gagatgattt tcaaggtgaa
      541 atttctagtt cagttgagtc actttcattc aaggcgatga gcaaaatgtc acccccacac
      601 tgaaccacac tcaatgcgct gttctcctat tgcatttaaa tttactccac ttttcctttc
      661 tgacacctgt ttaaatcaat atcttcctct ccaggtcgtg ggcagaatgt gcctggtctc
      721 tccgcacagc gcttctcaaa tccactaaaa tcaacacaat aattgaaata ttttcaagct
      781 gattacaccg ctgcctgagg ctaggctggt tgctaagggt aagctccctg gttgctaggg
      841 ggagtaaatc atcttgcatt atttgatttt tgttatagat atgaaaccgc tactccctcg
      901 attaaatgtc tctcagtcta acacctatgg gacctgggga aagagaaaag aaaagcagca
      961 accttgaccc tgtcaaataa atatctctaa cttttcctgt cctccggctt ccaaaccaaa
     1021 cctgtctgct gacttttttt attttttttt taaacct
//
LOCUS       KCLA01000375             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6079upu ultra-conserved element locus uce-398,
            sequence.
ACCESSION   KCLA01000375
VERSION     KCLA01000375.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6079upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-398"
BASE COUNT          153 a           97 c          108 g          145 t
ORIGIN      
        1 gattttatac aagtctttct gctttgcttt cataatgtga aaagcccatc atcctctttt
       61 tcgattccaa ctcagtggaa cacctgcctg ccccacaaga agggtatttg aagagaagtt
      121 tgtacgctgt gctcaaacac agcccagtgt gagtttttag cgtgtcagtc agtgagttag
      181 agggaaaggg taaggagaag ctaatcagga tgaaatgaga ttaaaggctg tctaatttta
      241 cagcaactgt gatccatcag ccactgtgaa agtgacagtg gaaatgaatg atggagacag
      301 acaggtgggg ctgtacattt cactgattta tcctcaaatg cactgggcct tattttattg
      361 agtgaacatg accgcattta tcatgactgt catctaaacc cacttccctc catttaaaaa
      421 ggtcacttta ctaggaggga gtaggataga ggcactttca aaacagattt caaatttaat
      481 aacacatgtt tataaaaccc tgt
//
LOCUS       KCLA01000376            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6095upu ultra-conserved element locus uce-2682,
            sequence.
ACCESSION   KCLA01000376
VERSION     KCLA01000376.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-2682"
BASE COUNT          310 a          207 c          201 g          303 t
ORIGIN      
        1 ttcagtaggc ctgtgaattt tacgctgtac tgaggatttt tggaaattca gggcataaac
       61 tacaggaatg cccagcaagc cccgtgcact cccatgacag catttgtctc ttagttacag
      121 caagggtaat gttatcagca ccaagcaacc cagtcgaaaa ttatcaatcg gttaccaaga
      181 aacctaatga tttcatcaat aatattttac cagttacaaa ggtcatttgg agaagtaatg
      241 ccacaagaaa tgtgcttgtg aagtgggtga tgtgtgggtg gctgttaagg gtcaacactt
      301 catttctcat ttctttaatt gatacttctg aatgagtatt aattgagctg caatgagaag
      361 agtgtgcagt ttgacaatgc aagtgacagg atggaagtgc catttgcaga gtgtatataa
      421 ccacagctaa caccctcaaa gcgttaattc cattttatgt ctttcacatt taatagcaaa
      481 tttgccattt aatctttaag acagaagtta cttattctca atctacctct cacttgcact
      541 gatataatct catgccactc agactggcct gtggcatgaa gcacatcaca ctttcaaatc
      601 aggtccattt tttcattagc tcatatcctt cctgagatgc cctcctttac agatggctga
      661 tcagcaatca acactagttt gtttcaatca gaaaagcagc cgtaacttct catttaaaga
      721 ctgttcctgg agaagcgcat tagtcgaagg catatagctg gcactggggc agcagtgact
      781 ctcacaactg atttcttttt aggatttttt ttaaagagat agacctcttt ttatgtggag
      841 aactaatttt aatttaaaaa catagcataa tgaaatccat acctctgcat gttgcaggga
      901 gcccttcaca tagtgtaagc aggtgccaat aaactgcaaa tctgaagagt gagtacaaaa
      961 ggtagctcaa gcctaggagg aagccaggga atagttccca tatgtacatg ctgacactat
     1021 c
//
LOCUS       KCLA01000377             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6111upu ultra-conserved element locus uce-551,
            sequence.
ACCESSION   KCLA01000377
VERSION     KCLA01000377.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-551"
BASE COUNT           88 a          102 c           99 g           97 t
ORIGIN      
        1 ccccgcgtag cccgtccggc tgaggctcca ctcgccagca cggcgggact cgcctcgcgt
       61 acccgtttat acagaacagg atcatttaca taaagtcctt aaggcaaata actgttgggg
      121 ctctaattta tatctgatcg aaaattagcc gtcattatgc gctccattag cagcgtcttt
      181 aatgtgcttc taagcaccat ttgtcaagcg gcttgttaat atccttcaag tctttaaagt
      241 tgagagctca ttaaagactg cgctccgtta ttgatgtaat ttagatgagt ttggaagagg
      301 gagcgcgccg cggacaacct gggtgagtgg ggagaggctg ctgcgccacc tcggggtgag
      361 cagcacccca cccctcaccg tggcct
//
LOCUS       KCLA01000378             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6125upu ultra-conserved element locus uce-5899,
            sequence.
ACCESSION   KCLA01000378
VERSION     KCLA01000378.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6125upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-5899"
BASE COUNT          140 a           79 c           95 g          159 t
ORIGIN      
        1 tgctttggtt tttttcattt ttttaagaag ctgctctaag atttgtatcc ccactgagga
       61 ccaagatgtc atagagatag agaaaatgcc gctcacttta tggattactg ttaggtcaac
      121 aaaactttgg cagcattgat taacttgaca gtgagtacag cagtacattt atcacttatg
      181 gctgtgctgt agaaaatcta ataagaggca aacaattccc tttagagcag taacaggttc
      241 actgtggcta acggtgcatg cactggaaat ttctgacttt aaattatacc ctagctgcta
      301 gttgtgtcat tgactcaaag ctactgtgct ttcactgctg tgttctatat tattaatttg
      361 atcaaaattg gtttagcttc tataaatgtg gtcaagccat gtattggagt tcatataaac
      421 tcataagtat ttttgaagaa ggcacgcaaa ggagcttgat cattatgtag aag
//
LOCUS       KCLA01000379             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6154upu ultra-conserved element locus uce-3966,
            sequence.
ACCESSION   KCLA01000379
VERSION     KCLA01000379.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6154upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-3966"
BASE COUNT          231 a          166 c          144 g          212 t
ORIGIN      
        1 ccacagcatt gtttgccatt gcagagagaa ggttggtgct atcatacaca gccatgtgtg
       61 tgtatatgtt taggaatgat tatagagata tggaaaatca tgtctacttt attgcccatc
      121 taaatgccct cccaggagct tttctcaaca ctgtcaaaca ttaaagactt gtttgaaagt
      181 gtggaatttg ctttgtgttt ccttggaaag gaatacatct ttcactacca caaccttctg
      241 taaccctcct gccctcctca ctcccacacc cccacacaaa gacactcctt aattgtatta
      301 ctgttaggct gacctccaac ccctactaaa atgaggacaa ggctagtttt gtgtttcatg
      361 ggataacaat ttatgagcaa ttaaaaatga agagacacaa agcattcatc acagtctcag
      421 ctagacaggc agctgaggtc aaaggttcta gcaatgaggt gtgcacaata tatttttatt
      481 tctgttttca ctaagaagga aacgggttag ctaaaaatta tggcatgcag cctccagttc
      541 aaaataggtg cacttaatct ttccagacag tccatgcttg ggcagatagg ttatgacagt
      601 gtgcacacac acacatgctt ccagtctctg cagaagaatt ctgaacatat tattggcaaa
      661 atcaaacaca cagttgcgta aaaggagatg cactgagtgc cccgaatgct tatgcggctt
      721 acaacttagc agctatagtt atcatgcaaa aca
//
LOCUS       KCLA01000380            1030 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6170upu ultra-conserved element locus uce-910,
            sequence.
ACCESSION   KCLA01000380
VERSION     KCLA01000380.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1030
                     /note="ultra-conserved element locus uce-910"
BASE COUNT          230 a          229 c          213 g          358 t
ORIGIN      
        1 aataaacaac tgccaccatc agtgtgcttc tcctgtgctg agtaagttga agggctctgt
       61 ttccgtggct gcagcaggct gtttagagta catgcttctg tctgcttttt tcgctcttgg
      121 gctggcatat ttgtctgtct ctgctgacag gagaaatcaa ttgtattgat tttggaaaaa
      181 tggctgtgta tgaattggta acacattgaa atctttgcac aatcatttga caaactaagg
      241 ctccctgagc attctctgaa acacatggga acttttccct tcgcttgagg gagcaccaga
      301 ttgcagtgat tgttctgaac aagaaagctt actatatgtc ctcctctgca tgcttactgt
      361 gctgctttta tttttaacaa actaacacgt tttctctact ctgtttcccc ttccttattt
      421 acccatgtgt ttttattaac ggattctctc tcccctgcct gcccctgtct gttggttttt
      481 agctctacat ggttcgcact atgacagagt ccttaaactc tgctgagctg ttgaagcagc
      541 tcaagtctct gggattggaa aagctattgc atgtgacaca caagtttctg aggcagtcct
      601 acatctatcc gcctctttta aactttggtg gtaagacttt acttattact tttacttttt
      661 gtggtgatgt gaactgttcc actgcaaatg gtctgctgct aagtctcgat ggaggtcacc
      721 ttggcatggg taggtgtttg tgctggtgcg taggctagtg ttgcatctgt tcttctcgcc
      781 tgaaaggctt ttacccacac agtgccagtt ttcaatttga agtggagcag tcgcttactg
      841 atagtaattc taagtgttgc tcaactaatc taccatgtgt attttccttt tttcccccct
      901 ctttccatca caattgtttc ctttaataat acagctttac atggtgagaa ctatgttaga
      961 gtccctcatt gctgacaaaa gtggttccaa gaaaaccttg agaagtagcc ttgaggggcc
     1021 caccatattg
//
LOCUS       KCLA01000381             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6186upu ultra-conserved element locus uce-472,
            sequence.
ACCESSION   KCLA01000381
VERSION     KCLA01000381.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6186upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-472"
BASE COUNT          187 a          103 c          111 g          200 t
ORIGIN      
        1 ctcacagaat tctagttcta aaggtaatga ttagaatttt ttcttaggtt ttgattaaga
       61 gagagaattg agcacaacat ggaacaacaa aagtgctggc acaatttttc ctattctgcg
      121 ccttctcact ttcccaagct ttctgatgtc tttccagttt ggagctcccg cttagataaa
      181 acagatgact ttctgggcct gcttctgcta acagcaggca gtagcaatgg tgactgattg
      241 gctgaaacat gaggattaat gggtatttat atttcattaa attttatgct cactggagaa
      301 taatgtatca cttgcagata ttgaaacata tgtcaaccct atccacttac atataattca
      361 atttgactta aatgcattga tcaaatttta ttaaagttca atatatcttc caaaaaggcc
      421 actaacacaa tattgctgct tcacattcat cagataaaag gaggcaattg tgttgtaatt
      481 ccatttatat tgtttttttg gaaaggggag attattgtga agtgaatatt cattacaagg
      541 tgactggctc tggctgaagg acttgaaact aagattatta agcaaattct caagcggtgc
      601 c
//
LOCUS       KCLA01000382             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6201upu ultra-conserved element locus uce-6944,
            sequence.
ACCESSION   KCLA01000382
VERSION     KCLA01000382.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6201upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-6944"
BASE COUNT          184 a          125 c          109 g          218 t
ORIGIN      
        1 cccccccctt tctttcttct cttgtgatct gagatcccct ttttgttgat gttgctttcc
       61 cacttaatta tatgcatgta ggttaaatga atacctgacg aaagggccca cgtttcaagg
      121 cagtgacatt tgatagctga gaggaaaagt ggctttaatg aaaagcaacc tttggaattc
      181 ctgcttgtga aaaatccaat tcagcttttt gtgctgccag caagaaatga tcagtagcac
      241 cagtgtttat ggtatgtccg ttttgggatc tacttccttt gcatctaaat agcaaagaca
      301 aatttaaata gcatgattac acaccgagga ctctgcatgc aaatattttg taataaataa
      361 ctaatgttta atagtatatt ttcacctgtg tgtttatttt tttctcttgc tatcatttat
      421 cattttgact tcgattatag cattagtttt gtccatcgta ttgatctcag ttgtaaaacc
      481 taaagttgca tgctactagc agtgcactat atacaccact gaactccaat ggtatgtaaa
      541 ttagtaaaac tcggtgactg gagaagggga aaatgcatag catttcctat atacacctat
      601 acatttatgt gcttgtacat acacccctaa aacacc
//
LOCUS       KCLA01000383             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6217upu ultra-conserved element locus uce-5344,
            sequence.
ACCESSION   KCLA01000383
VERSION     KCLA01000383.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-5344"
BASE COUNT          285 a          129 c          165 g          233 t
ORIGIN      
        1 tttttaaagt gcagcagaaa gtttgctcct ttttagtaaa gggagatgga tggagataaa
       61 acaaagatta ggctgtttca acaccacttg ctgatacact gagtacagtt cagagcacaa
      121 caaggagaaa caggaaaata atgaacaacc catacagagg tgactgagga gagattagaa
      181 cgagatatta aaaataaaca aaaccagtca ttgatgaggg ctatgcttaa tgcaaaatgg
      241 atctttcccc tttcaagggc aacaccacac atcttgtaca tctcatactg gctgagaaaa
      301 gaaagactag ttagtggccc agaacaccct gatgttctgt gctacaaatt ggaagtgaag
      361 gttactttcg tgtagacttt atcttaaagc agtaaaacgg gtagctgcag ctacaactga
      421 aagtattgat tttgtaattt cagcaaatta agaacaagac aggaaaccta ttaaaccttt
      481 cccctgattg ccagggcact ttttggtgat gctggtgcag acattaaaat tacatgcgac
      541 tgtctcttta aagaaaaaca tataggtttt gcaggagatg gtgctggtta agatgctgga
      601 aaagaatctt tataaatctg tgtaatttca catttcagat gtggaacttt tgaagcctga
      661 tgacatgaat gtcaagcagc acatctaaaa ttttcataaa ttacggttca tgttggatat
      721 gcttttattg cattttaata aattaaaatt ttcacaaagc cagaagattt tttgtaataa
      781 tagcaaagat ggtaatgcta gtaatagcat ta
//
LOCUS       KCLA01000384             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6232upu ultra-conserved element locus uce-2719,
            sequence.
ACCESSION   KCLA01000384
VERSION     KCLA01000384.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6232upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-2719"
BASE COUNT          145 a           64 c           67 g          117 t
ORIGIN      
        1 gttagggggc agagactgac aagacagtca tttatttttt taagcagtgt cttgatgaac
       61 aaaccaatgc tgtattttaa acaaggcttt tgcactgagc taccccagca cagtaattta
      121 atgaatctac atttcatgac tgaagtgata aggatgaaac attttaaaat aaccaaaagg
      181 tagatacacc aaaaagtctg atgaaacatt aaatgaatgt agtgtaacac attatctttg
      241 cttctgcaca tccaaaaagt gcaatgaact aaaacattgc attaagccaa gaataaagct
      301 aaaaattaaa ttggcttaga aagatctagt gtagtggttt atgcactaag aacgctgtaa
      361 atttggccat ttaatatcat tctctttacc tct
//
LOCUS       KCLA01000385            1090 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6247upu ultra-conserved element locus uce-1010,
            sequence.
ACCESSION   KCLA01000385
VERSION     KCLA01000385.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1090
                     /note="ultra-conserved element locus uce-1010"
BASE COUNT          335 a          196 c          233 g          326 t
ORIGIN      
        1 gaaaaagctc acaaccttta tttctgaaaa ggcttcttaa gaatccaaag tgaagtgctt
       61 gtaagtgtct gaaggaggaa ggagagcaag gcctgtggag atgaagccat ctgttgatgc
      121 tgagtcctgc cacgggtttt ttccccataa ggcatcacca cagacacagt ggtttgctaa
      181 gaaccaagag cagagtcagc ctaaggaccg taagggacag tagctgaggc agggagataa
      241 tagtgaatta agaaaactga acagctacct ctgaaaatgg gctaagcatc gcctgccgat
      301 ccacccgcct ccttgtatat ccgtgtaatc ttggaacttg attgaatagt cccactccga
      361 ttttgtaatt aaaacatcat ttatactgag aataattaag acaactgtac atttgatttt
      421 aaaatcagtt ttgagtattg tgccttgtca agctacaaga atggctcctg cagctttaca
      481 acttagcatt aagaggcaga cagtgaccgc aggcacctga gtggaaggtt tgacaggttg
      541 ataaattagg agtgacactt gccaaaatgg ctgtccttgc ctcagcctgc cagtggagca
      601 tttacacact gttaattgaa ttggcaattt gtgtaacagt acctgcccct gagcttttgt
      661 aatgctggag ctgccattta gctctgataa tccaggactt gggaataagg acgaaaagct
      721 tcacatgata ttattgcaga tttaaaatga cagttgggga ccttgttgcc aatttcccat
      781 taaatgagaa ataattaaca atagcaataa caaagtctta taaagctgga aagttaaatt
      841 gacttttcag cagtagtatg gtttgaaatt gcttctagtg tgattatcag attgcccttt
      901 cagtattata taccctaaat agtatcatct gatggtccga ataggcaatg ttttcaaagc
      961 taccctgttt tattagtgtg agactcttct gatttatctg tggggtttat ttaatttctt
     1021 cttgccatgt aaaaattgag ttatgttata atatttcata cagataaaga cttaatgaaa
     1081 tattagagat
//
LOCUS       KCLA01000386            1103 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6277upu ultra-conserved element locus uce-4981,
            sequence.
ACCESSION   KCLA01000386
VERSION     KCLA01000386.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6277upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1103
                     /note="ultra-conserved element locus uce-4981"
BASE COUNT          374 a          195 c          211 g          323 t
ORIGIN      
        1 ttactacatt cagctttttt atgatcactg agagttttct ttaacaatct taaaagcacc
       61 tatgtattaa aagttaatct ttcttctccc tctgcagata tacaatgact tgatgaagcc
      121 taggaattca taaaaataat attttatgtt ttaatagcaa ttaacatatt aaatatcagt
      181 gtacaaggag actatacaaa gtgattccat agtaaattag tctgaaaatt gccctaattg
      241 ttatgccaga agatgccctc tatgttttgt cttgggagaa aaagatcttt ctgtctaaat
      301 gccattatgt gtcatcctag ctgatcctcc tgcttagcgg ggacattgaa gttgtacagc
      361 aggagccgct tctcaggctt taagaactac agtaaatctt caaacaattt atccaaacaa
      421 aggctagtgt gtggagagaa aaatacacgg gaagcagatg aataagcaac atcaattatg
      481 gggggttgac ctttctgccc cacaccatgg cacagatttc acaccaaatc gcagcagatt
      541 gaagttgaca tgcctggagt gaaaacactg gtcctcacaa tgttgccact ctacattcac
      601 agagctgtag taagcagaga agggagaaaa tgaagagaag ggaaggggtg tgtgaatgaa
      661 aaatcatgca taatgggcct gggtttattt tacagagaac aaaatggctc aatttgagca
      721 cttagactgt tgaaattggc tagtgtgaga tacaagaggt tcatccaagg ggacacttga
      781 atcaggtgca ttcagttata tgaccaagaa gaataaaggc agttcttaaa aacttgttaa
      841 tggttttaaa tatggcattt cacacctaag aaaacagtca tagaattctt tttacataat
      901 catagcagct gagatgtatc tttggtcaca atgatagaag ttttttcagt agcaaagata
      961 ctgttatatg cagcattatt ttgccataac aaaaatccac ctacagttat catatctata
     1021 ttttaaaata ttcacaccct gtcccagaaa atattgccat tgcatgcaag gaaaagctag
     1081 gctaactaat gtgcacttcg aac
//
LOCUS       KCLA01000387             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6292upu ultra-conserved element locus uce-5363,
            sequence.
ACCESSION   KCLA01000387
VERSION     KCLA01000387.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6292upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-5363"
BASE COUNT          247 a          166 c          269 g          281 t
ORIGIN      
        1 tggctgaggt gaaccataga atgctgaagc aagttggcaa acttcagatg ggctaaaagt
       61 gtaagggccc atttagtgcc tgtcactgca tttatttcac tcatttggaa gggtgggaga
      121 tgggttgcag agccatgctc tgcactcata acctggggac agtgcaaatg ggcacaggat
      181 ggaaatgtca gccacacgtt tatgtgctgt gagcattggg tgtttaggcc tggctttgaa
      241 agccctacta aagctgtact agcaaccgtc tgtagcgggg atgatgcaaa ataaaaagta
      301 gcgtctcatt tggtgtgggg ggtgagagat gtaataaact aggcaacacc aagaatggtg
      361 aaatgattga gtgtgataaa atcaggtgtc ttgtgttctt tctcactgca gtactttacc
      421 ggcctagagt gtggacacaa gttctgtatg cagtgctgga gtgaatattt aactaccaaa
      481 ataatggagg aaggcatggg acaggtaaaa tgtcaattct ggtgtatttc tggaaatgtt
      541 gtgttggaga ggaggggtaa gaattctgtc ctgctaaggt ttaaaaaaaa caaagaaagc
      601 ctatgcccca aagctttggg ggctgcagtc tttgctggga tgaagctgga gtgactctgt
      661 ggaggcagtg caggtgtttc tattctgggt gggaggaagt gcattgtgcg cagtggcaca
      721 tctgggacgt gaagatggag ccaagttact acttgtgatg tggattgtgg tctgttgctg
      781 tggaatactt catgatgcaa aaacaggata aacactgttg cttttctgac cttttttatt
      841 ccagaccatt tcatgccctg ctcacggctg tgatatttta gtcgatgaca atacagttat
      901 gtaagtatgc tgggctgcta cctcttggct tccctctttc cattttgttt ctcatatgtt
      961 act
//
LOCUS       KCLA01000388             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6307upu ultra-conserved element locus uce-7666,
            sequence.
ACCESSION   KCLA01000388
VERSION     KCLA01000388.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-7666"
BASE COUNT          225 a          105 c          123 g          224 t
ORIGIN      
        1 tcattcttat aaatgtgacc tttcaaaatt ctttctcttc ttgctgttaa aataatgaaa
       61 agactaaaaa gactatgctt gtaattaaaa gtcattttta aataacctca gaagattgtt
      121 tctagaaatc aaaacatctt tatggtccta tttctaagga aagaaagaca agtgactggg
      181 atcctgtaca ctttactgta gtctacatta attaccttct attaaaaaat gacaaagacc
      241 tttttgaaag ggaatctggc actctttcca cagaaatgat ggcagacacc ctactctctg
      301 ctgatttctt gacacttcta attacctata ttcatttgaa attgtttcct ttgtagtgag
      361 ttattggcat gattttcaga gaacaagagg gaaatggaaa acattttagc aagttaagaa
      421 aaaaaaatca acagtatcat tgtttgcagc ttttgttgaa actacgtacg tgagtcattt
      481 gagggacatg aaggtaaatg aaaggttata ctttgccctg cacgttgtcg ctggtatttg
      541 taatgtcaat aactgttgaa ggttgtcagg aagctggaga gataaaggtc aatagcaatg
      601 acaaatatat cattgtatgt gtttgaatat gcaatattag cctaatctca tggtggaggt
      661 tttcacaccc tggaaat
//
LOCUS       KCLA01000389             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6323upu ultra-conserved element locus uce-6725,
            sequence.
ACCESSION   KCLA01000389
VERSION     KCLA01000389.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6323upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-6725"
BASE COUNT          278 a          162 c          135 g          204 t
ORIGIN      
        1 tgaagccatt attgatttgt ggaatgcggc ttaaaatctc agcaaacacc gaacaatctg
       61 caaggagctc ttaaatactg aacgtatgta actagacatc tcaatttaac aaccagacat
      121 acattaaaca gcattaatag ctaggcactt aatggatcaa ttccgactgt ttgtgtaatg
      181 tggaaataaa aaaggcttat taaatgacaa gctttccctg gtttgtgcta attaattata
      241 cactgcatct gactgctaat ttagtggaaa aatgcagccc aaaactatgg tttctgcttg
      301 aactttgcct caccaccacc taattcagcg cagagtgcag ctgcgacctg cctgtgaacg
      361 acgacagtat taaattagag cacaaggcca tcaatttaat aagtactgta gcaggtaatt
      421 tgaataagga cagtattagt attctaccag tgcacaacta aaagcagctg acctttcaga
      481 ccagagaaga tccttgaaca catctagctg aatcggagaa cacagtaata atctggccat
      541 gttaagagtg ccaagagaga cttttacagc tctgcaccca ttactataca tcagctactc
      601 cacagtatat aagaacactt tatgtacaga aaaacaaggt tataaataga acaaaggcaa
      661 tgcgaaagat atatctgcct tggcacattt gaaaattctc cttattacct tgatttatgg
      721 tataaagaat gtgaaattaa tcaatgcaca taaaaaagca ccacaagcaa cccccccac
//
LOCUS       KCLA01000390             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6339upu ultra-conserved element locus uce-6888,
            sequence.
ACCESSION   KCLA01000390
VERSION     KCLA01000390.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6339upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-6888"
BASE COUNT          220 a          172 c          193 g          207 t
ORIGIN      
        1 cagtagctca gttgggtccg gctggagttc ctaccaatcc tcttgagtcc ggagtaacct
       61 aaataatttt gtgtccgtgt cgaaagaatt cagtgtcaaa acaaagctgt aaactggtgt
      121 ttcaacgttt gtcctgagcg cggctcaacg aaaccctcgg tgggtagccg cagcctttgc
      181 gcctcgagga ctcccctatt atacacctgt tcttgacaga tcgggggcta caaccggaga
      241 gctcaggcac atattaacca gcaggaggaa agactctgct ttttatgaat gcctgccgac
      301 gagttcggtg tttggaattc agtcctacct ataaatcaac atcagagact acaacccggt
      361 gtgttcaaga gctttgttta aacatcaaaa ggagagcgca gacaagcgct atgatagaaa
      421 tataactaat cacttgcaaa tacatctttc ctgtcagtag gagcttaacc tttttgttta
      481 atgttactgg aggaaaaggc acttctttcc atgccatcta ttttctttaa agccatacac
      541 agcttcgctg ggaacaacca tcctatttat tcctggtaca aaacaaccct aggaaaatgg
      601 ggtttaggag cagccggtgg aaagaagctt tatggaaact tgcaaatatc aaggctgcgg
      661 ggtgattaat aggaacaggg agtagcgagg tggctaaaca tgttgggcta acccatggct
      721 tgctagaacg acaggaggag aaatatttcc agggcttcag cttgtttgtt ggctggcaat
      781 gggcgcaact tg
//
LOCUS       KCLA01000391             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6354upu ultra-conserved element locus uce-4695,
            sequence.
ACCESSION   KCLA01000391
VERSION     KCLA01000391.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6354upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-4695"
BASE COUNT          274 a          185 c          188 g          263 t
ORIGIN      
        1 ttaagcttct acgtgtgtaa gcaagctatt tattgtagag tgaaatgtca tctcataaaa
       61 gcatcagctg caaccagaga tgctgttaca ggttttgtat tattagcatc caggagtgct
      121 gggggtgagg gaaaggtgca ggagcagcag gggtctgtag ccataaacag aatttcacag
      181 agtcatgagt ctttcagcga tctccggctt gcattacttc taaagttagc attatttctc
      241 cattccaaat aatcagaaac aaaccatcag acagtaaaca ctccaccagt gactgtgttg
      301 tttgggtctt ttcttccccc gactcccccc actccccgct actttgtaaa aagaaaagac
      361 actaaaagtt ccttctgtga gttgccaagg tgctcccagc ccattgtgca gaatcattgt
      421 caggttaaat tagggagtac agactccatg agtgtaaaaa aatcaatact tgatggaaga
      481 ttgctccctg gaaaatctgt tttgattcca ggattaattc gcgaccaaag gcttctgcaa
      541 aatgacatgc cattagtcag aaaatgaaca cattctaccc ttgaaattgg atggaaatat
      601 gtcaggtgat tgacctattc attctcttca ctctctgggc agagagagta ggtgtggtag
      661 ctgtgaatta ggcccacaaa ccaggtccat tttccaaggg gtaaaaatga agtccaatgt
      721 gaattgcaag tattctctag gccattgttg caaagctatt gcaaatgcat cccgtcaagg
      781 taaatgcatt tgtctggaag gcctgactct cttgtgtttt ctaaatctca gaataaacca
      841 tactcaaaat cttaaaataa agcagttttt tctcctgcag aaaatttgca atattaatga
      901 ggatgtaatt
//
LOCUS       KCLA01000392             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6370upu ultra-conserved element locus uce-5429,
            sequence.
ACCESSION   KCLA01000392
VERSION     KCLA01000392.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6370upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-5429"
BASE COUNT          162 a          128 c          126 g          146 t
ORIGIN      
        1 agagagaaaa aaaggaaaag ggaagggggg agggggggga aaaaaaagga gaaaaaaaga
       61 gaaaaggggg aaaaaaattg tggattttct aactaaagcg cggcgtctcc attcagcccg
      121 cggagaaagg gtgcctgctc aatcctctta gcgttgacaa tataataaaa ccagagggac
      181 ttttttgaag tagatctgca cattccacgt ttggattgag gggcaatgga ctgtttaaat
      241 tgctatttac atttccagct gttttaccag tgatttgccc aacttaatag ctctttaagc
      301 ttttaaacaa gaaaatagct attctcacga ctcaaaggag aaaccatggt tatttcagac
      361 tgcctctatt gtcaacggct tagacccctc tgtctttata gatgcccttc cctttatagt
      421 acttcccttt tctacctcct cctcctttct aaatctccct ccattcgagc ccccttctta
      481 cattatccac ttgcagcaac gtaacgcggg tccgctcagc tgcgcaggaa gttggtgggc
      541 agccaccaag gctccaggag gc
//
LOCUS       KCLA01000393             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6386upu ultra-conserved element locus uce-1977,
            sequence.
ACCESSION   KCLA01000393
VERSION     KCLA01000393.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6386upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-1977"
BASE COUNT          102 a           69 c           57 g          112 t
ORIGIN      
        1 ttagcctaca agcctgatag gggtcagggt aataacacag aatgaacaaa ttacactgtc
       61 attccactta aattatttaa gttatttaat ttgacctgta gatagtctct tgtcttctca
      121 tcatgcctga cttttaagtg ggaggtcttc attcatgatg atcctttaat ggaagcaaag
      181 ctttctccat ttaacccaca gtgttatcaa tcatgtacag ggataaatga ggctgtaaga
      241 ttttgccagt atcacaaatg acactgtgac ccgaggccaa catctttatt tgcttctcca
      301 gtgattcact tcagcagata ttaaccaatt ttataatcca
//
LOCUS       KCLA01000394             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6400upu ultra-conserved element locus uce-5146,
            sequence.
ACCESSION   KCLA01000394
VERSION     KCLA01000394.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-5146"
BASE COUNT          250 a          175 c          205 g          286 t
ORIGIN      
        1 tcctgtgtac attgcttaat actttatgtt tgctgaggtg ggagggtgta agttaccagc
       61 aagagagttc acatttagtt gagtctttca gacagctgct gtagttaatg cctgtgcata
      121 tatcatattt atctctcggc gtatgagtct ttagacactt gctgaggaaa ggcgtcctcg
      181 gaatttcaca gcccggatag ggaatgtgca ggagctgtag gatggagtcc acttaaagca
      241 tagaggagag tttgtgaggg ctggggacac gagatgttac cctgatcccg tggttcttgg
      301 tgtgccagcc atttaaactg gctgaaatta tctagagcat tcagatccat aaaatgaatg
      361 tgtgttttta aaagaaagtg acagtgcttt tctgtttccc tattgaaatg ttccctgggc
      421 tagttcaaca gaaacatttt tacattacaa ctgtgaaatc ttggcataaa gctccccttt
      481 gtgcccttca ttattttctc acaaatatag tccattgtca catagctgaa gttaatttga
      541 tcaacattgg gacatttaac ttttatgtcc ggtcaaagga gctgtttcat gctcattttg
      601 ggtattcaaa agaaatgatt gccagaaaaa taatgttact attaacaatt cagagcaatt
      661 agtttcccag ggagaggcga tgtgatgcac ggctccacac aactattctt tgtcatttta
      721 tgggtgctca tcagtcaact gtcacatctt ctcaaagacc cctccaacct aaatgtttct
      781 ctttgggctt ttcccagaac tagcagctga atgagcaaaa gaaaagccac ttagtttcta
      841 ggcaaaggaa aacttcactc taaggatctg ggtcatttga gaagatccta ggagtagctt
      901 gctttcgggg gatgtg
//
LOCUS       KCLA01000395             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6416upu ultra-conserved element locus uce-799,
            sequence.
ACCESSION   KCLA01000395
VERSION     KCLA01000395.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-799"
BASE COUNT          173 a          217 c          157 g          204 t
ORIGIN      
        1 agtactgccc ataccaacag gctgtcatct cctgggtgtt gctctgctct tccacttctc
       61 ttttttgcta ctcactccac ttccccttcc tcctccaaat ccctcctcct attcatcctc
      121 cccccttcct caccccacaa agtcttgggt tcttcctgct tgtaatttgt cgctaatcag
      181 ctgtcagtct tggagcagat acgagaggtt cgtctctggc tgagggtaat ggccttaaaa
      241 gtcaccgagt caatgtcaat gggatcgctc caattcaatc agagacctgg atgagaaatg
      301 gcccctgctg acattagcac tcattttgag ctcaagcatc tgggccctag taaataacca
      361 tcagtgggtg ggtctggggg acaggtcatt agccccacga aaaataaata tcgtttccct
      421 tgatggctgc aagtaattta gctcagacga ggaaatttca ccctagatta agtatgatga
      481 gccaatatca gtcagaggag gccaaacagt gagagcttga tgagatagag ggaaatttat
      541 atgcagctgg ctgaatgcaa gatgagttta aagaaatgat gttctataac actcttcagc
      601 catgtgcgat gccaggcact gcagttcttc cagccccccc ccaccttgca ctgctgtggg
      661 ctcctccagc ccacgggtac ccatttgtgc tctgcatggc cggtcttctg ccatctcacc
      721 tcctcctcat ctccagcccc tgctctcaaa c
//
LOCUS       KCLA01000396             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6432upu ultra-conserved element locus uce-7987,
            sequence.
ACCESSION   KCLA01000396
VERSION     KCLA01000396.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-7987"
BASE COUNT          281 a          126 c          127 g          238 t
ORIGIN      
        1 ataagaaata aaatgccaaa gcagacaaaa tatttatgtg ttaaaaagca aacttatttc
       61 aaatttcagc ttccatttta ttcccctaaa tacaattaga tttctttttc aaggaagact
      121 ataatgtcaa gtctcaaaaa atactctttt ttgaagactt ctttacaaaa cacaaagtct
      181 aatgagatat ttacctgtat tagtcaagac tatacccaca tacccacagt ttaagtgctt
      241 gttaaagcct tccagtcatt ctaggctcag ggaaatagtg tccaaatgta ccatatttag
      301 cttctatctc aaattctccc gagctgtcaa tttaggtgtt aaagagacca tttgtaaagc
      361 ttggctggga attgccatta ttgactggaa tgtgtgttta tcattacatt caatgatgaa
      421 agtggaacat gtagcatatg aataaatgtc agcagatgtt tcttttaaat ggcctgattt
      481 caacctcctg ttgtttgtct tgaatacaaa tattaaaaga gagaaaaagg cagaaatttt
      541 tatgacataa gtgcaagggt agttatatta aaaaacaaca aaaataatga tgaaagtcac
      601 agaagaacga ggaaagtata attaataaga agtatgttga cgctctcatg ctactatctg
      661 gtttgatatt ataaaagata caagaacagc agttcagtgt gggctatatc actccatagt
      721 cactccataa ggaagactca cagaatctat tctcaggaac acattacatg ga
//
LOCUS       KCLA01000397             854 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6448upu ultra-conserved element locus uce-7520,
            sequence.
ACCESSION   KCLA01000397
VERSION     KCLA01000397.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 854)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 854)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6448upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>854
                     /note="ultra-conserved element locus uce-7520"
BASE COUNT          292 a          167 c          189 g          206 t
ORIGIN      
        1 tatttccacc caatgtcatg ggagagcgga acaaaaaaaa aaagcacttt tttcatgcag
       61 cttttaaaat agaaaagcaa aaaaatactt ttacagcact taataggcct cccttgcaat
      121 ttaaaacctg attttcagga gctcatatat tcaaatctcc aaagtctatt tgaaggcaca
      181 tctgaaggtg caccctgcaa cctgtgtgta gcaaactctt ttgaatcttg tccttgaaac
      241 aaaaattagt gccccatggg agctcagcag tgtagacaac cactaactgc agaatgactg
      301 aaagcagagc tgagagtcct tgcagctggg agggagaagg ggatgagaga gcgagggaag
      361 atgagaaaag ccttcaggag ccatttggga gacagtcact gggaagaaga aagaaagaca
      421 tgcactaaaa acaacagaaa cacaggtgga aatggcctac tgggaaatca ggctgtcaac
      481 aaacaaaagc cgaaggccag aaagcagttt cagtagcagc ccctgctaac agggcttcag
      541 tgttcagtaa ataaattagc agcagctttg actgtttgga aattagtagc gacatgatga
      601 aagaagcaaa tgacttgctt ttatctgaag tggaagcact aaacttccaa agaaatcctt
      661 gcctgtatta gaagaagcag agatgcttat atcagctcag acttgaacaa caataatatc
      721 agaagtttca tttcatttac gagaggctca gaacttcgtt tgtacctaat gagacctgtg
      781 tccctctggg ctctttctga cagcatctct cctttgaata gtttatcgct taggaggcaa
      841 aaataacatg ggtt
//
LOCUS       KCLA01000398             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6463upu ultra-conserved element locus uce-400,
            sequence.
ACCESSION   KCLA01000398
VERSION     KCLA01000398.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-400"
BASE COUNT          218 a          142 c          127 g          196 t
ORIGIN      
        1 ctatatttac tgtcattgag cacactatgt acccaaagca aaactggcat ttgtcgggca
       61 acaagagggg gaaaaaaaaa taccacacaa ctgttgggag gggtttctct gaaaactgcc
      121 tgatatacct tcagcaaatg aaagggcaaa agagatttca tgcaatgcta gtttgaaagc
      181 atcggttcat taaggatatt aattttctga taactacaca tttaagtatg acacactgga
      241 gcagtatcta caggatttag caattattaa tgcgtgacag tttcaaatgc taagtgaatc
      301 aattaaacag cagcattcac aatttgagaa gagataactg cttcataact gcctaagact
      361 acaattttca catgacaaaa aagggccatt caggctcctt caaaacctga caggtcaaga
      421 aagaagtttg aaacaaaagc accttataag catcatctct cctctttact tgtcagatca
      481 actttgctag tgtctccgct gaaatggcat caccatgcca gctgccacaa ggtgattttt
      541 catgtcttgt caaagaaatc ttttattcta tttgctctgc attaacatgt tacatttatt
      601 gatcaagccc tttctgcagc cacagcaggg tcctgtgctc ttatgcctaa ggggactttg
      661 atgtcctggt gacattctag acc
//
LOCUS       KCLA01000399            1178 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6479upu ultra-conserved element locus uce-330,
            sequence.
ACCESSION   KCLA01000399
VERSION     KCLA01000399.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6479upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1178
                     /note="ultra-conserved element locus uce-330"
BASE COUNT          378 a          221 c          211 g          368 t
ORIGIN      
        1 aatggctacc ctgaaagtta ttttttttgt tttaatttgt ctcaaagagg aaagggggag
       61 agtggaacga ctgctccata attataaatc ttctgaaact gtaactcagg aaaagactgt
      121 tcaaataaaa tgtttcccag aaaagaatat ttggcagtgg atggcttttg ttttccctaa
      181 taactttaaa agtctgccct agtaaaccat tttactacaa cgtttgaaat ggtagagttt
      241 acattttatt taatgaatag ttgcagagca ttaaagcaac atctcatcgg caaaacagct
      301 ccttatcctc actttgtctc aattggtttt tttacatttc attttcaatg acatgtcagc
      361 cgtctctcac caacctcaaa ggaaagttga atgcaaggct tacaaagtta agctgacatt
      421 tgctctcttc caataaaaaa tatttagtcc attaaacata aatacctgtc attatgatac
      481 atggactggg tacaagcctc ccgtttccct ctgatgttta ttacatccaa acaactgcag
      541 tgcctgcatg ttttcaactt tagtgtattg attaaacttt taaatggctg ccatataacc
      601 cagggacatc aggaagatta atttgcgtca atgttcatct gtaattcatt agccatttat
      661 tctttacaac cacatgggct atcaagaaaa tgcaggccat ttttcactct gcacaggctt
      721 gggaacagat cctgaaattt gtgctgcata caaataagct ccccaggccc ggccacttaa
      781 actgcttggc ttttcaaaag ttaaagttgg gaataacagg agaaaaaagg gaacattacc
      841 agaaatggac aaaagatatg tcctcagggt actagggatt taactgagtt tgtccactgt
      901 cttttcatcc atggattatg gtttcttatt tcagtcagat taaaataact gaaacttgtt
      961 tctgtgcaaa ggccataaat aaaatgagtc gcacccccct ctaatatctt ctaaaatgca
     1021 gttacttgga gaaagcaaga aagaggcagt gaagtatgaa aagctcatgc ctcaaggaaa
     1081 ttgtagctat gaatctaaga aaaggatgca gttttaacaa actctcacat ttatttgtaa
     1141 agtgtccagc taaatattgg tatgtttcct tagggtag
//
LOCUS       KCLA01000400             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6493upu ultra-conserved element locus uce-7636,
            sequence.
ACCESSION   KCLA01000400
VERSION     KCLA01000400.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-7636"
BASE COUNT          168 a          138 c          113 g          178 t
ORIGIN      
        1 aactggaatc acccatcact actgggcttt gcattcctac aggaaagttg tacaggattt
       61 attttcagtg gaatattcaa gttctaaagt ttcttccacc cccaccatgc tcctgttaag
      121 tggtgtggat gaaaagcata aggccataag cactgcagtg tgaagacatt tttagaccaa
      181 gcattcctct gcttggcata gtgcaggttt cctttgtact ggtttctacc ttttgactag
      241 atgagggcca gagggcaatt ttctccatgc tcatgcaatc tcatgccccc cgtgactaaa
      301 taatggtcat tatacaaact atattcaatt gcatagggct ctgtggcttt atacttaaga
      361 ttactattcc ccacagacaa tagtgagaat accaggttaa tacagctgtg acctccctgt
      421 gctcaattta aactcaggcc tcacaaggtg agagccttgt gcatttaccc actgaaccaa
      481 tcagttaaaa aaatgatgtg atagctacca catgttgctc cctttttcat aagggaattg
      541 ctctgtaccc ccgtaagagt ttctaaagct cagtaacaat gctgagcatc tatcaaa
//
LOCUS       KCLA01000401             987 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6507upu ultra-conserved element locus uce-1745,
            sequence.
ACCESSION   KCLA01000401
VERSION     KCLA01000401.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6507upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>987
                     /note="ultra-conserved element locus uce-1745"
BASE COUNT          305 a          211 c          234 g          237 t
ORIGIN      
        1 tgtaacgcga agccattcca ggctgaatga cccagagatg ataatgaagc ggatgatgat
       61 gccattgcct gtgataatgg tgtgacaggg agaataccct gcaaaactgc accggctgat
      121 aagtgcaaag gtataaacaa acccaaacaa tctggactta gagacattag tgcggaacaa
      181 aagagagggg gaagcccaag ccaactgatc aacattaaaa agaaaagact ttgcaagggt
      241 gacttttcca gcaattttcc cgaaagcctt cccgacccca gcgacagccg gcaaagtgtc
      301 ttatactgat ggggggacga gccagctctc cctgcccagg aacagtttgt agcaaacagt
      361 ctgcgatatg aaaatgtatt taatgcaatt aataatttaa gaagcgagag catgtgctct
      421 cggagagtta aatgcttgtc agagtgatag atgcacgctt cagcaccaat acatttcgta
      481 ccaagagcac agggattttg caaacttgtg ttgaccttgg gttgcggtgc agaggaggcg
      541 gattgcaaag gcaggacggc tcgtggtggg agagtgcgtc agctctccat ttacagccct
      601 ctccccaatt aaaggactgt aaaaacatta aaattaatgc agtcttaact cgagagcagg
      661 ctctactttc ttaattagtg cataattatt ccgtttttga tatgctggaa aattatcact
      721 cggaaattat ttgaggcaca gtaacaatag cccccccaaa ctcgattaac atgtggaagt
      781 aattaacact ttattacagt gaaaatactc ttcctgctat attgtaatga cttctgccat
      841 tgcatcatgt gcaggaaatt tagaacactg ccataaagac aggactaggg ttacaaaccc
      901 tgctcagagg acctaggcta gcagctttcg ggatgaggcc aggacgtgcc atcagttgcc
      961 cagtgtcctc agcaggaaac aggattt
//
LOCUS       KCLA01000402             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6522upu ultra-conserved element locus uce-3817,
            sequence.
ACCESSION   KCLA01000402
VERSION     KCLA01000402.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6522upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-3817"
BASE COUNT          127 a           78 c           91 g          150 t
ORIGIN      
        1 tgaaaaagaa aggtgggatc gtgtttttct cttctgtctc tctctttctc tctctcactc
       61 ttccttgctt ttctaaacaa gctaagagtt tttataattc atcacctggc tgacagatga
      121 gttctgctgg agaatattgg aaaatgtctc aaatctcata tatatgctaa tggtatgctg
      181 agactggttg gtggtatgcc ggagttttta atctgtctcg accagtgtgg aaagtggagg
      241 agacaagtca ttgcactcga caatttatga tcaaacaact gaattgtaaa ggaagaagga
      301 catgcagaaa aggagagtaa ttttctgatt taacagcgtt gttactacaa ataaagaaat
      361 cttgattttg actgcactcg acattaaatg agtttcctgt gccctgctct gaatttttca
      421 ttttcagatt tgtataaagc accctg
//
LOCUS       KCLA01000403             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6536upu ultra-conserved element locus uce-2184,
            sequence.
ACCESSION   KCLA01000403
VERSION     KCLA01000403.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6536upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-2184"
BASE COUNT          267 a          235 c          191 g          287 t
ORIGIN      
        1 taccaaaagt cgctgaaccc tctgcaatct accacagcac caagatgcca ctaggaccat
       61 gggcttgcgt tttcctccta cagatgactg cagctctgcc tctcaaaagt tgctctcctc
      121 cttttctcct taatcagagc ccttaacccc atgatgtaaa caaagatctt tgcttaattt
      181 gcaatacttg gctaagatgg tctgtctgtt agagctatgt cactgtattt gcagtaggta
      241 tgaagacagt catctctgct gctgagccta tagtgatatt cctacagctt caaaggacct
      301 gagatagaat gatgtctttt ggctaattaa atcaggatgt aatgtaacaa aggttttttt
      361 cccccttctt ttccttgagt ttctgctttc ataacctaat caggcatttt actgggtgaa
      421 acatctctat taagtctctc atttctcagc cacatgatac aaaaacagga tgataattga
      481 ggctgcataa ttgatgtggg caatgacaga atatagaaaa gggctccatt agccaggtca
      541 cgtcattagc atacattacg ttcaacaaga ttgctctctt cacctcctat ttattaatgg
      601 gttaatccag tcccatcggc ctgaatacat cattgtttag gtcctttcct gtaagatata
      661 gtagctcagt tttacattag gaaagaattg ctgctaaggg caataaaatc ccgtaagtgc
      721 cagcattgca gcggcgccga cagcagaagt tctctgttcc cctaaagctg aggctgccgt
      781 gaagctgcag cactaacatg tcctcagagg gactcctgca gagacacatg cgagtcattg
      841 ccagatcaga ccacacatgg actccttgaa cagtcctagt gtctagtctg tcttggattt
      901 cctgtcctgg ttaccacgtt tcgcagcaca aagagggagt tcattttccc tcccactgta
      961 tcaaaagaaa ctaaaagcta
//
LOCUS       KCLA01000404             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6552upu ultra-conserved element locus uce-2853,
            sequence.
ACCESSION   KCLA01000404
VERSION     KCLA01000404.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6552upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-2853"
BASE COUNT          232 a          133 c          131 g          296 t
ORIGIN      
        1 aagctaccac ataacccatt ccacactggc aaaatctagc ttatgtaaag taaatgaatg
       61 atttttagac ctaaatagct ttatgtttaa gagtagacaa aactgagttt gctgtaaaaa
      121 cacgttcttt agcggtgggt tagttgcctt tgtgtcatga ttgtactcag atcgtatgat
      181 cgtatttaat aaagatattt ccgtttgcta ttggaaaagg attgctgcag gaagatataa
      241 aagcttcttc gatgttttta tagaactttt gcataaatct tgtatccata accttatcta
      301 gtgacataaa tattagcagc ttgtttctat ttcacctgct gtagaaccac tgctgtccta
      361 cagcaataac cagcaaggga atagagctat ttgctgctgt cataaataag acggggtgtc
      421 acagctgttt tcatttgact gagcagtaat ggagttaatt atacttctag tctctctgtt
      481 tttgatctgt gtttccaaag tcatctcagc ttcttgaatt ctagaatttt tttaaccctt
      541 ttatctactc acctggatta gatttttttt ctaatttgga gggaatttca ttgttctttc
      601 tagtatttat caatgctttt cttattaggt acattttatt attatattaa aacctcttct
      661 aaacatcaat gtatttgttt atactgagca cctagcagat agagagtatg gtttttcttc
      721 aagactacct acagagactt acttttattg gaaaaatctg ttttcaactc ggataaatca
      781 ctgtaagaaa ca
//
LOCUS       KCLA01000405             440 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6568upu ultra-conserved element locus uce-4231,
            sequence.
ACCESSION   KCLA01000405
VERSION     KCLA01000405.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6568upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>440
                     /note="ultra-conserved element locus uce-4231"
BASE COUNT          123 a           90 c           94 g          133 t
ORIGIN      
        1 cctccctctc ggtaaatggc aagcgtttac aacccaacta aaacagtacc aagagaaatc
       61 ctgtgtttgc tctttggaag atattcaata cattatagtg agctgcaaat gtcactggat
      121 tgggaactgt aagagcttta cctttaagtc tttaagtaaa gacttgcagc tggtgcagtg
      181 gctaggtaat ccctaatgat aagctgcttt taatgtgggg gtgaggcagt tttcacacag
      241 atattactgc attaacctta ctctaggtgc ggtgcaggtg tgcacaatat tgtgctttgc
      301 agccttccct actttattct tccagggtat ctgaaggctg ctttaacaga tcctcttata
      361 ccatggtgaa aagattgcag ttcaagccta ttatcaacaa aaacctgcca aaagggctac
      421 attgtcagac tttatgatgg
//
LOCUS       KCLA01000406             868 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6584upu ultra-conserved element locus uce-5396,
            sequence.
ACCESSION   KCLA01000406
VERSION     KCLA01000406.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6584upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>868
                     /note="ultra-conserved element locus uce-5396"
BASE COUNT          302 a          162 c          143 g          261 t
ORIGIN      
        1 gcatacaagc caccctatta aagttgataa actgcggcag attttgcaat ttgttggcaa
       61 taatactatg agatacaact tgctttaatt ttgtattcta aaccctgcta tttagtttaa
      121 gcgtgcctta aaataatttc aagttttatc cttttaataa aattaaagct gtcactaagg
      181 atggtaaagt tactactttg gtttttaaca agtaaacata tatatatttt taggaaacag
      241 acgtcattcc tatatttcct ttaaaaccag gaatgtttaa cacatcagcc tgttgcattc
      301 gagacattaa aatgaaaaat gacatctaca cccattaata tcgtcaatgt ataaacagca
      361 cagcgtgaca cattcttgag agctgaaggc tacaacatct ctctgaaaca taaataacaa
      421 agcactcaga agcatatttg atgttgatat tcatctctga gaaaaacact gctgcctggg
      481 cttcttatga aaatagatgc agcccaaatg gatctcctgt aattggtttc agatagggag
      541 gtcaaaagaa atatgataca agaaactatt atgtggaaca ggcgaaacaa gaatgtttat
      601 acaggcactc cctatttatt ctgacaagag gtgtatactt tgcagataac cggagagaaa
      661 aaacttgcca gaagacaacc agattctttc ctttttctaa ctccaaaaca ctgttttttt
      721 ccaatgactg catacgctaa cattcctgcc aaatgaaaat cacgttcttg aacataaagc
      781 aagtttccaa atggctgaat atgtcaaatg agagtcatct tgctggtagc actatgcaac
      841 tgaaacctat caacatgtta ggctggat
//
LOCUS       KCLA01000407             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6600upu ultra-conserved element locus uce-4849,
            sequence.
ACCESSION   KCLA01000407
VERSION     KCLA01000407.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6600upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-4849"
BASE COUNT          111 a          128 c          124 g          158 t
ORIGIN      
        1 cccccccgcc tttgcagcct ctgttcttca tccattattt aggcttttct gactgtaaca
       61 gcaacattca ccttgtatac cttgtgtggg gtttaaaata tagataaaag cagaaggtcg
      121 gacttgaaac acagattctg acagttgatg ctgactttgt ctggaagcta caaaattcgg
      181 agctgtctgt gcccagcgat gggcttgcta cagctggatt ttattttccc cctgtaaact
      241 gcctcagtat ttgatgtttt cattcagctt tttagtttct aaaagttctg gggctggctt
      301 caggacaggg gagttgggct tcaaggctgc gggtctaatc ctgacccgag ctgggtcgga
      361 gctgctttcc catccaaagt gagctggggt ggaaggggcc ggtgtctcca cccggatcca
      421 gcagccacta attggcacct ctgatagggg atccaacaaa gcccaggact ttccctttca
      481 attataaatg cccgtgtttc tttcatgtct tcttcttcca g
//
LOCUS       KCLA01000408             881 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6615upu ultra-conserved element locus uce-6931,
            sequence.
ACCESSION   KCLA01000408
VERSION     KCLA01000408.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6615upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>881
                     /note="ultra-conserved element locus uce-6931"
BASE COUNT          293 a          173 c          164 g          251 t
ORIGIN      
        1 aatattcaca gaaacgtgac ttgccaatgt gtgccaagtg tctgactaac gcaatttgaa
       61 actgctgagc cttttcacac tacccacccg caaaacgggg ctggtaatgg aaagtctgac
      121 agacccttaa ctatagtggc actactgggt gcagctataa tattaccctc ataattctac
      181 tatataataa caacaaagga aaaaaaaggt gaagggtcat tgcgctttgt ctttagaatt
      241 aagatggctg tcttcatcct tacagcatac tcttaattct ggagacacgt cttaataacc
      301 tctaaatagt tccaacaaaa gagccgtgtc agaggaatga gcaggcccca aggtgtttca
      361 actggagtgt tttcatctgc ctttattgct ctatccctct ccagaattaa ggcaataacc
      421 tgtgataaat tattcaggaa ctgctacagg gatcaaagca aaatcattct gttaaagtgc
      481 tgtttgcaac atttggcact tagtgtgaaa acttttaatg tgtgcaagct gaaaatcaag
      541 gattttaaat aatttaacag catggagttt ctacaaacca gctaaagata gcatgttgct
      601 atttaactgc cttttcctca gaccccctac accatgcgtt tttatcaaat gtgatgatgt
      661 cacaatataa acaaagtaag actgagattc ctgctacctg ggtggatcat tacttaacgg
      721 attgtcagga gaaaccacgg aattctgaga ggaaaattag ccacttatta aatatcagat
      781 atcttttcta tcgatataaa aacgaaggaa atagcaagga aggaaaacaa aggaaataac
      841 tacttgtcat cttcagttct atttgatctt cctggaaaag a
//
LOCUS       KCLA01000409             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6631upu ultra-conserved element locus uce-2785,
            sequence.
ACCESSION   KCLA01000409
VERSION     KCLA01000409.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6631upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-2785"
BASE COUNT          182 a           86 c           65 g          191 t
ORIGIN      
        1 ccgtatctct ttttaacgaa gaaaccacat actcacgtac aggaatcaca tgtttacaac
       61 atagaccacc tattgatata ttttggtgac tttcactggg tttggaagtc ttcataaaat
      121 gagaaataca acattttatt acacaattac agctaattat tttagaaata cagtttaaat
      181 gcgagttatc ttaactgtat tgcttatctg actggaaaga tataagcaaa acctgaaaat
      241 cataaacctt tccagaacat tatattttat gcagtccaaa atgtgacaca tggggtcttt
      301 aataattcac tgcttgttaa cattaaacaa ctgttaacat gctcaaataa ttagttatgc
      361 ttgcttgaca tgtttgcatc tttaataatt gatgcattta tcttaattac taacagtatt
      421 atggtcgtaa tatgcatctt ttttctatct taaaatttta acaaaaactg actttttgcc
      481 aaaaatgatt atcctctaag ttttaattac tcattgtaat taaa
//
LOCUS       KCLA01000410             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6647upu ultra-conserved element locus uce-5179,
            sequence.
ACCESSION   KCLA01000410
VERSION     KCLA01000410.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6647upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-5179"
BASE COUNT          266 a          186 c          159 g          235 t
ORIGIN      
        1 tgcatacttt ttccattatg gtgagaaata gttaatgttc catagtattt gatttattta
       61 ttaaaagtat tttaccagga aacacaacag agacaggcct tctcatttac agtgagaccc
      121 cagagagcag taaatttaca tacacaaagg actagcatca acccctgaac ctttaatgtt
      181 tattttgata gcccaccctg ctggtaaggt cttttgttag gaagccaggt acaacaaggc
      241 aaggatccaa acaaacaaca ctggtagctt tgttgaccag gtcatatgat gtcctgccct
      301 tgaacagtac cccttgtctt ttaccctttg cccccagaaa atgaagttag ttagagtccc
      361 tgtggcagat ttagcatttc ctttcagtgt ctgccaatct atcaaaattc agctaccgct
      421 gtgaacccat caactcagtg caaaaaagaa caaggcttac catggacccc ctcaaagtag
      481 caatcattta tcccttcctg aactttagct gacctttgta agcatgctag aagttgaagc
      541 atgtatcacc ttgtggtgta tctgggctgt gggttttgct ctctccccag tcagcccaaa
      601 accaagtcct gcatttcatt tcattaataa aagcgttaca ctcaggaata gccacttgaa
      661 gggaaataaa gtcttcaaca ggagcgcaca attgctttag caccatgcaa aggaatagaa
      721 acaaatataa atattctgca tttactgagc cagttagcat cactacagga aataaacaaa
      781 acaagtggat tccattcacg aagatttatt gcagggagga ggggagatat tgtttgcaga
      841 acacaa
//
LOCUS       KCLA01000411             235 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6663upu ultra-conserved element locus uce-2745,
            sequence.
ACCESSION   KCLA01000411
VERSION     KCLA01000411.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 235)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 235)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6663upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>235
                     /note="ultra-conserved element locus uce-2745"
BASE COUNT           80 a           44 c           48 g           63 t
ORIGIN      
        1 gacaatgaga aacacattga caaagtgttc acattattgg ctgataggtc tgcatcagtc
       61 actcattcag aagcacaagg tctaaattgc agaaccaatt aacggcacta atagcccttg
      121 cctgaattaa tctttgagac aaaagagaag agaagtggaa gagctattag caaatcaagc
      181 tgtaccatcc ctgctttatt gcaggaatct aagtgtctgt atttggctat tatga
//
LOCUS       KCLA01000412             380 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6694upu ultra-conserved element locus uce-3352,
            sequence.
ACCESSION   KCLA01000412
VERSION     KCLA01000412.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 380)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..380
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6694upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>380
                     /note="ultra-conserved element locus uce-3352"
BASE COUNT           81 a           94 c           69 g          136 t
ORIGIN      
        1 aggtgtttgt ttcagtataa agaataaaaa aggaagggac ctccctgctt tttggagagg
       61 gcggttgtat aatgctgttt gaatctgtac tttttgtttg gtgctaagtt ttaatagtta
      121 tcctttgagg attttcccag tgagcttatc tgaatacacc aacaggcttt tctgtaatat
      181 tcgcatttcc cctttggttc agccgagccc actgacagat cattcaaatt caattgtttt
      241 atgtctaagc cgaacagcta attaaagtag ggatgattaa cctgactggc agtgtcgctc
      301 tctctccctc gctctctcgc tccctccctc cctccctcct gttccaatca gtctttttct
      361 cactctctct ctctctctct
//
LOCUS       KCLA01000413             848 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6709upu ultra-conserved element locus uce-7469,
            sequence.
ACCESSION   KCLA01000413
VERSION     KCLA01000413.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6709upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>848
                     /note="ultra-conserved element locus uce-7469"
BASE COUNT          234 a          181 c          192 g          241 t
ORIGIN      
        1 gtgggtatga gacttctcca gagaaggaca gagggcagtc ccttccagtg ctctgtttcc
       61 ctcacacatg cttagctcat tgctagtact ccctgatttc acaggctctg ctgagctctt
      121 ggagtctcca ccccaaaaag gtgcccacag tttcagtgat gctcacagaa ggtgagggtc
      181 tgtatgtcag gagaaaaaca taacactcgc attgaaggat gatttaagat tattcttccc
      241 cacttttgtg tgagattgga tctgttgtaa ccttcctcca cctttgttac ctttgtaatt
      301 tcagctggca ggttaaatgc taatgcaatt gataggggtg aacaagtggt caaggaacaa
      361 cctgctctga ctgtataatg caccggagaa ttgcaaaaat atgcaggtca gatgtaattt
      421 tgacagcaaa tggctcgctg caagggttta tgtttccctg ggtagtctta aaaggagttg
      481 gactacagta agtactgcat tgcttgaaaa aataaccgag ttaaacttca tggataaaat
      541 cccggttctc cgtatcctca gatttcatga tcagttttta ttggaactgg gataataaga
      601 ttatagaatt aaaagagaag tcgtacccat tttcttcggc tcagcagtcc taatgtgtga
      661 aaagagagcg acactcgttt cccaccataa atacccagtg caaactgctt ggaagaagaa
      721 gcgatggctg accacgtgca gcctgatttg gtccctaccg agggagaaat tctgatcctt
      781 caacagacac tgggtcacgg catttaattc taccatctcg tgaggtaatc ctcgagttaa
      841 tggttttc
//
LOCUS       KCLA01000414             939 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6725upu ultra-conserved element locus uce-790,
            sequence.
ACCESSION   KCLA01000414
VERSION     KCLA01000414.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6725upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>939
                     /note="ultra-conserved element locus uce-790"
BASE COUNT          293 a          158 c          195 g          293 t
ORIGIN      
        1 gccataaagc taaccaaagt tactcttact tccacaggca tgttactgcg cttctttgtt
       61 catttctatg acatggagat cattgaagaa gaagcctttt tggcatggaa agaagatatt
      121 actcaagagt ttccagggaa aggcaaagct ttattccagg taaatctagt aacatcagtc
      181 ttataagagt gtctgcgaac actcaaatgg tgaaggctta gtaaacctag aagcttcata
      241 aagtgccagg tgtggctaat gttaattggg ttggggagta agcactgttg tatggaaata
      301 ctgggtaggt aattcctgct cccttaaacc agttttatat aactgcaggt aaaccagtgg
      361 ctaacctggc tggaaactgc tgaagaagaa gaatctgaag aagaagctga ctaaagaacc
      421 agccaaagcc ttaaattgtg caaacatact gttgctatga tgtaactgca tttgacctaa
      481 ccactgcgaa aattcattcc gctgtaatgt ttcacaatat ttaaagcaga agtatgtcaa
      541 taggatatcc tctgcaaaag gtttttgtag tatgtcttaa tagtcaacaa taaaaatatt
      601 ttagagtatc tttaatgttt agataacagt gtattagcag catgcaataa ttacatcata
      661 agttctcgag cagaagcagt ctgttgcaag ggtcttttgc caccagttat cataggctgt
      721 ttttaagtta gaaaactgaa tagcaacact gaatactgta gaaatgcact ttgctcagtg
      781 taatacttga gttgttgcaa tattgattat ccatttggtt gttacagaga atccttaact
      841 gtaatcgatg gttgttgccg taatagtata ttgcctgtat ttctacctct agtaatgggc
      901 tttatgtgct aggttttaat atccttgagc ctgggcaag
//
LOCUS       KCLA01000415             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6740upu ultra-conserved element locus uce-4176,
            sequence.
ACCESSION   KCLA01000415
VERSION     KCLA01000415.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-4176"
BASE COUNT          212 a          172 c          119 g          183 t
ORIGIN      
        1 gctacacagg ggtatcagca agacactgcc gccacggaaa cgggatccac gcacctcagc
       61 attaacgtac acacaacaac aacaaataac gcactcttca cttgcacaac ccatcacatt
      121 cagaatgcac agggggtctg cagaagggtg ctggtacaaa aagggctctt tatttgttta
      181 aaaacaaaca ggaagcaaaa caaacttacc tgctgttgtt gcagatgcag cagttctact
      241 gtgcttactt cagtgctcgt gtcaccactt gatcttccat ctctgctgcc agcatctaat
      301 tggctgctta gagtgctcat tccattttga ttcattgaac tgttgcttat tgtctctgtc
      361 gcagattcct gcatcatgac ttaataccta aaagtgatta agaagtatca attaacacac
      421 acgttacacc ttcacacttc cattatcaag atgtccctct ctgccaatta cacagacagc
      481 atctttagaa ggagaaaaaa gcctcgcaga gccgtttacc aggacatgcg atgcaaactc
      541 tgcattcata ctgatactaa tcactggaat tattgtttcc ataagagatc tttgtgtgct
      601 cacatttaac agccaaaata acataccatg cacgcagcat ggtcaatagc atttacgaac
      661 gactacattt taaagtctac ctataa
//
LOCUS       KCLA01000416            1001 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6755upu ultra-conserved element locus uce-5277,
            sequence.
ACCESSION   KCLA01000416
VERSION     KCLA01000416.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6755upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1001
                     /note="ultra-conserved element locus uce-5277"
BASE COUNT          311 a          207 c          181 g          302 t
ORIGIN      
        1 ctgaaagcaa agattaccag ccttaacttt caatttatcg gaacctggcc atggtttaaa
       61 caccggctgc cctgctcaaa cacagtttct agccgtagct cttgattttt cttcacagct
      121 tacaatatac ggagtaacta agtgcaaaac agcacctgta cagaaccctg cacacctttg
      181 gggtaactcc tcaccagtta gccctaagga tgcaggagat cccacaaaca gaacccagca
      241 cccaccagag tggataacac cggctattca gtttcaagtc tgtgcagtgc acaggcaaag
      301 cagccttata acaggagcaa actgacattg aaaccagcgt ctggccagca gcagctccac
      361 atctcacaga tgacttgcat atgaagggag tatatacaat gactatgccg atcatttcct
      421 taggatttag agaaatgagc aactttagct ttgcagactt catggttgct tgatctcact
      481 acagtaaaca gctccatatt tttccttttc atgttttatc ctgaagcaac agagcattac
      541 attaattgac ttgtcttatt aattcaataa gccgcttcca agatgaaatg cttagctatg
      601 cttgcttgtt tttggcactt tttggttgtt ggaagaaaag ctttaaggct agaattgctc
      661 tgatgttttc cacagttcac tgaataattt tatgcactac tgaagatttg ccacatttgg
      721 aattactgca aactgctact ttttcatcat attataattt aattcacact tttagtatga
      781 taagaaaaca tttaacagtt tgcatattag agaggagtat ttgttctgcc ataaagttgc
      841 ggttaagaat tcattatagg ccatttcttt ctaggatttg taatttggac ataagatgct
      901 tttagaagat taaagatgac atgaaagcca ccccattcaa atgaattata tgaaagaaat
      961 ttcagggaga aaaaattgac cttgctgtaa atacatagcc a
//
LOCUS       KCLA01000417            1081 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6771upu ultra-conserved element locus uce-3863,
            sequence.
ACCESSION   KCLA01000417
VERSION     KCLA01000417.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6771upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1081
                     /note="ultra-conserved element locus uce-3863"
BASE COUNT          393 a          186 c          237 g          265 t
ORIGIN      
        1 tctgagagtt gtacaaattg ggtgcaaata gcaggtgcac aattcattgg aagaaaagaa
       61 aattgatcct agcaatccat ttcggagtat cattggagaa tctgatactg ctttttactg
      121 atttatgctt tgatgaactg ctaattgact tcatctctga ggtcacataa gaaaataaac
      181 tgagtcaagt gcttcagcca gatcagctta cacaaaaata gttgatggtc gtctcgcctg
      241 gggtaaccag atattcctgc tgagtaagag gacgtataaa aacattgctc acttcaagtc
      301 accaaagtga ggaaaagccc acctaggaaa tggattttga acgaactagc tggagcactc
      361 tagtctcagc atttccacat gcaaagagca gggaggggaa gtaaagaaaa cagagtggag
      421 ataaacagta ctgtatattg tgttaataca gcccttgtat ggaagttata cccttcagtg
      481 accttctaga attgaatgct tgctacatgc atgtcttcag agtccaaaca tgtgtgaaag
      541 agaccattcg tctacagaag gacggatttc tttttgttgt cgctggaacc gggacagcag
      601 acatgtctat ttgccacatt gcaaataaaa tcgcttcaac agaaatcaca taaagtacaa
      661 aagctttggt aagtccaggg taaaatttac caagaataaa tgatgagatc ttccacacat
      721 gcttttggtg cccaggcaag agccaaaagc agtgcaaaaa aagctttcat atgaaaaatt
      781 aatagaaata aggtgtgttc atgatgatta catcaaagaa agatacaaaa aagaaaaaga
      841 tgtctcagaa aaaggggcat cctgccaaac atattagaga tataaatcat ggaattggaa
      901 aaagggggga aaagaaagat gggctgtgat aaaatacaaa agaacaaata caaacagatg
      961 gacaaagaca caggtccact gaggaatctg gtacgaggtt tgctactaga tttataggtc
     1021 actctctcag acgtttggtg gaaaaccgtc cagcctgcaa atgaatataa agggaagaaa
     1081 a
//
LOCUS       KCLA01000418             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6787upu ultra-conserved element locus uce-2705,
            sequence.
ACCESSION   KCLA01000418
VERSION     KCLA01000418.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6787upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-2705"
BASE COUNT          264 a          167 c          167 g          243 t
ORIGIN      
        1 acatgggagg gtggtgagga acaaaacttg aaaagatgtt aagccatcca aagtgtaagt
       61 tctccacagc agtactgtct gcctgcaggc atatgggaag atcagggagt acatcactct
      121 tagacaccca ggcaggcaaa catctctgag acacaagagc atgaagctgc tgctgtggca
      181 tccatcatcc cgtggaggac agtgaaaaca tgtgctgtca tctctgacat tttaattgaa
      241 aagaaagctt acacagattt cgaccttaag cagtatgttt atacaagtgt atacagagaa
      301 ataatctgtc agttcagagc aggctcactg ctataggagc tggtttagta actgaacaat
      361 ccaacattag ctcacacacc ttgccttgtt ccatgcctca ataattttta gtagaaatac
      421 tttgcctaga ggcatgcagt tattaaaaaa gaggctcagc ttgcttaaag tctggaatta
      481 ttagctcatg gtaacaagcc tgcactggag aaactgttgg ttctttgttt tcatgacttt
      541 gctgtaattc accgtcttat tttcagagac aaacttctgc tttgtttggg aagttacaaa
      601 aaaataaaga acaaaaaaaa aagaacaaga aattacttca aaaagacttt tttccatttt
      661 tgttataaag caggatttac aaagtccttt tatcttaata tttctaaatt gcgctggtcc
      721 aaataatcag gctgaacaga aaattctaag ccgctttttt acctctttcc cagtgtaggg
      781 atctgttggt agtgagtact tagagtgctc tctccaaatc acctcccagc cctctaaggg
      841 t
//
LOCUS       KCLA01000419             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6803upu ultra-conserved element locus uce-2771,
            sequence.
ACCESSION   KCLA01000419
VERSION     KCLA01000419.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-2771"
BASE COUNT          311 a          145 c          157 g          265 t
ORIGIN      
        1 aacaagcaaa gaaaacaata aaaccactat gtgtgtgtac ctctgtggtt ccagatttgg
       61 ctatatatgc taaatcagac cattaaacac tgtaaagcca atggtgtact gaaatactat
      121 cacagccttg taattaatat tatgttacac agcatagagt aagtctttta ctgtaaaaag
      181 ggtctcctca gatgactagt ctctaacagt atattctcac ataattaaag tggacatgat
      241 ttagagaaaa gaaaaggcca gaatataagg ctcagctgca gataatatta aatggcatta
      301 tcaataacag agatcccagg gtttgcatat taattgtaag aaggtgctaa tttgagtgtt
      361 ttaagcttgc attcacaagc ttgtttacat gctttgttcc acctggacct gtttggaggt
      421 ttgtcaaaaa cctaacaagc agaaaaagat tgcatttgaa aatacacata catgtttaat
      481 taagccaggg ccaccgaaca ttcctccata tatttagctg ttgagattta agcaccacta
      541 gagcatcagg cattatcacc ttttgaagta ctgcagaatc tttaatattt aaagcacaaa
      601 gcagacttta atataaaatt ctagcagacc acagaagatt aaagacgcat tataaatgtg
      661 acagtttgta aatggaacac cagtattaaa gggaaccccc tgatatttta tagtgtagtt
      721 ttcaggtgta ttctaaatta taaatacaat taaatagcta taattattct ctgggagggg
      781 aaggcagttt aactattcta gaaaatagtg attaactata atgtagggaa gtggtaatat
      841 gtgttttacc tcactgttct tgcaggcaaa cttcacac
//
LOCUS       KCLA01000420            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6819upu ultra-conserved element locus uce-257,
            sequence.
ACCESSION   KCLA01000420
VERSION     KCLA01000420.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-257"
BASE COUNT          339 a          162 c          195 g          348 t
ORIGIN      
        1 ggacagctgt atttcatact aattatcaca cacaaagctt actgatttca agtaaatata
       61 caaaagatga aaacttcaga agctgtactt aaaatgtttt ttgtatttga atacttaaaa
      121 gtacagcaat gtgtcgagct tttgactgtt ccgcttcagt taaaccactt gctggtatgc
      181 aaacaagaag ttgaatgtct attacagaca tctacattta taactaaatt aacatccaaa
      241 ttttgaataa agaaaatgta ttgacatcaa aacaaggctt cctttaagaa catatttcta
      301 acacattgat ttcagtccaa cttttagatg tgataaaaaa ttagaacatt gttgtaatta
      361 gttcagggag aactcagaag taaacttact taatttattt gcataaattg ccattctgtt
      421 atctttaaaa gcaaatgcaa attggctctg tctgatatga tgatggttat ttggctcaaa
      481 agtgcttcaa tttgcgtagc aatctggtgt cgtctctgca gtgaggcgat cccaggtaac
      541 atacaaatcc tgaattattc cagaaattag tatgtttaaa gcatcaattt aagtgctaat
      601 tgcagtagta atgagaaaaa gcagtactac tgtgagattt gcatctactg ccccatcagt
      661 atgcctggaa cggctgctga ctggcagagg atttggctgc taattaaata attgtatgca
      721 tggcagtgtt ctcgtctgat tcaatagatg aagattaatc ctcagataaa tatgtttggc
      781 tggtattgaa atgtcttatc agtttcttca aaaatagctt gtgtgtatgg tgtgtatgtt
      841 cacactgtga atgactctat gcctccgtat atctgtttgt aaatacagat gtatataaag
      901 gaaaaagata atgtcatagc atcatgtaag gagaaagctt cgtttctgtg agttgacaat
      961 gttcgtattt ggtatagcaa agccatgact gtgttaggca ggtcattgca aatgtgaagt
     1021 gttcacacca atattttgta ttct
//
LOCUS       KCLA01000421             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6833upu ultra-conserved element locus uce-4265,
            sequence.
ACCESSION   KCLA01000421
VERSION     KCLA01000421.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-4265"
BASE COUNT          141 a           87 c           90 g          142 t
ORIGIN      
        1 actcttgaca ggagaaatca ggagcgcaca gtccagtgaa gaattaaact actgggagta
       61 ataatatggg ctgatgcact caatatagca gtaatgccct ccgagaaggg taggaaataa
      121 ttcagttcct ctaggctgca cagaagctaa atacagtatg acaagaaata gtagcagcac
      181 tcattatgtt tgattgctaa ttaccccttt gaatgattca gttatgcctg ctactagata
      241 attagtttag taatttatgg ctgcagcaca aactagtact ttaattttca ctgcgcagtt
      301 tttacaacac ctacagttca gacagtgctt ccgttcctat tccctcccaa attgcttttc
      361 ttgatagctg ggggaagggg gggaatcaag aaattatttc aattttctgg cgtagctttc
      421 aattatattt atgtctcttt attcaaaagt gaaccatata
//
LOCUS       KCLA01000422             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6847upu ultra-conserved element locus uce-7866,
            sequence.
ACCESSION   KCLA01000422
VERSION     KCLA01000422.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-7866"
BASE COUNT          159 a           93 c          122 g          225 t
ORIGIN      
        1 gatgaagttg tagtcatgca atgaatatat attggaaaca gactttccat tatagtgctt
       61 ctgtactggt ttcattctgg aatatagttg ctgttttact tgggatattg ccttctgttt
      121 ttagaccatg ttcagcattt tgtccttctc tttttagcag aagcagtcct gctccagctg
      181 taacagcagc atctgtgacc aacttacagg cttctgaagt cactgtgcca caaataaatt
      241 ccagtgaaag ctcagggggt aaggaagatt gcatgatggt tttgattttt ttttgaggta
      301 acagttataa agcaattttt cttgccgttt gaggtcttta acacatgctg taacatgttc
      361 tcattgatac ccttaggtct caggaaatca tggcagtata ttctgtactg tggttttgtt
      421 tattctttta gtcttagggt ctatgtttgc cattcacaat aataatagat tttggatgac
      481 ccgatgtaga ttggtagttc agttagtcaa ataaggaaaa tacataagct ggaagagtaa
      541 ttatttattt ttaatccatt ttgtatttaa acttagagga ggttctgtac tatctgtga
//
LOCUS       KCLA01000423             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6877upu ultra-conserved element locus uce-696,
            sequence.
ACCESSION   KCLA01000423
VERSION     KCLA01000423.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-696"
BASE COUNT          245 a          102 c           86 g          203 t
ORIGIN      
        1 catcacagag tttaagaatt actagttaca taccttgcct tttctgtatg tctcgtaaaa
       61 cacagcagtg acaaggcaat aaggggcaaa attaactata aagaagagac acatatctct
      121 ggtctaaaca aaacagtgta ttttaattga aataacattc agtgaaactg aacatcaaaa
      181 catttaactt tttcaaagtt ttcagcatta aagaattaag atgaaacaca attaggaaac
      241 agaaaactgc aacattgtag aggatggtca ctttttgtat gtcatgtggc tttaaaaaca
      301 agtcagataa atgatgatgc cattaaaact gaactaatta aagaaagctt cttttaagaa
      361 ctcattaact gcaacctcat ttgcataatg atgcatatta attaagtttt aatgaatctg
      421 aatttgcacc aagcctattc atgttggctt tgaaacaaat tgaacaaatt agttaaaagc
      481 tttttggaat ctacttttca caccaaacag gatatgaatg caatcatctc cacaaaaaag
      541 aaatattttt cttttaattt aattcaaagg tatgcagacc catctattaa ttatttttaa
      601 atgcaataat ttccatcttt tctttgcaaa atcaac
//
LOCUS       KCLA01000424             225 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6892upu ultra-conserved element locus uce-2352,
            sequence.
ACCESSION   KCLA01000424
VERSION     KCLA01000424.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 225)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 225)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6892upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>225
                     /note="ultra-conserved element locus uce-2352"
BASE COUNT           62 a           35 c           49 g           79 t
ORIGIN      
        1 ccacgctttg cctcttgtat aaatatctgc cgcgtttcca gcaggagtta ttgctgttat
       61 atattttaca gacactttac tgtcatctaa gtggtttatt ttattcccac agctaggagg
      121 aaactacaaa aggaattttg taatctgaat gtgattgtgg gcagagagta atgttttgaa
      181 aaggagccgg gagtaaatta tatcactgct ttattgtgtt taagg
//
LOCUS       KCLA01000425             449 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6906upu ultra-conserved element locus uce-6904,
            sequence.
ACCESSION   KCLA01000425
VERSION     KCLA01000425.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 449)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..449
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6906upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>449
                     /note="ultra-conserved element locus uce-6904"
BASE COUNT          169 a           76 c           71 g          133 t
ORIGIN      
        1 ttaaatgtgg ttatataaag taatacaaaa ataagttttg gctttgctgc gaatgtgcat
       61 aatggaaaga caaacactat taaaaagacc atcattttta gtgattaaaa taatccacaa
      121 cagaaaaaca atcttctgta acttcccaag ttcccattta tcatagtttt gcaaaaagaa
      181 gccacggtaa tttcattttt cttgacttct attaaaaaga tcaatacata tgattccaaa
      241 gagtctcggc tcatgaaaag atggagctag tctgtaatca catctgaaag tattggttgt
      301 cattagcagt aagattgatc tgtaaagaca gtcagaccag agtgaaagta cttaaaaatt
      361 tccattggac tattgctgaa caacactgcc cagcaacctt tcaccttaca gataattaaa
      421 tacagataac gaattaccat attaggagg
//
LOCUS       KCLA01000426             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6922upu ultra-conserved element locus uce-3825,
            sequence.
ACCESSION   KCLA01000426
VERSION     KCLA01000426.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6922upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-3825"
BASE COUNT          209 a          168 c          223 g          232 t
ORIGIN      
        1 ctagaggctg gtattttgta ttagaggctg gtatttcatt ccagaggctg gtactttatt
       61 ccagaggggc atttcattcc agaggctggc atttcgctag agaagcgctt ttgaaatcag
      121 aaaaaatggg tggaaattgc agtgggctcc gcagagaaaa tggagcggct ggctgcggaa
      181 ggcacccagt acttaaatgc aagagctgat ctaatcgtcg ttctcgagga agctttttgc
      241 tgcattttag cacacaaagc ttttccttct ctcttttgtg gctggagctg ctatttaaga
      301 aagcaaaaat caataaacct ttccagcttt caatcttttg ccccaaaagg tggttttttg
      361 gggagtgttt tgtcattcat aagctgtggc gacaaatcct tgacatcatt cgtggataat
      421 atcgatcagc tcttccgttg cgccaaagga caaatagaaa tcatttatct gtctggactc
      481 caaaacagcg aaagacaaag ggctctgcca gccacccatg acaatcagca gctgaaggta
      541 ttagcagggg gtcaagttca gaggtcggcg gtcaaacagg ttgtcatcag tttctcacag
      601 ctatcagagt ggaaaaagcc agctggttct tattagccaa atccggggag gatgtgggtg
      661 ctcggtggct tgggatgaat ctgctgtcct ttgctggtgt aggtttgggg ttcctcattg
      721 taaactcgtg gtcttaacgc tgtcctctgt gtcgtcggaa cgggaagggg agatgtttag
      781 tctggagtca aaaagggagg ctcagggttg accttctcaa cagcctgaaa tc
//
LOCUS       KCLA01000427            1048 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6936upu ultra-conserved element locus uce-2971,
            sequence.
ACCESSION   KCLA01000427
VERSION     KCLA01000427.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6936upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1048
                     /note="ultra-conserved element locus uce-2971"
BASE COUNT          259 a          253 c          238 g          298 t
ORIGIN      
        1 cctggttctc agacggccag agtgcccaca agagcagctg aaactgtggg agctcccaaa
       61 tgttcggttc ctctgaaaat ctggctggaa gttagagttt taaagggaca ctgtcatggg
      121 gatgtggagc ctgtgcatac gcatctggct tccagaactt cctctaagtc cgaattgact
      181 tcaatattta aaggggtgat tggcagggtt cctacaaccc cggcagaaag ggcagtggtt
      241 actactgaaa ggttgggtaa ggaaactgtc aaagtgcttc agtccgggca gtgctaagac
      301 aaggaaaagc gaacaaaaga aacccgagtc gaatgaagct cccttggttt tgttcagcgt
      361 gaccttgtcc ctttaatgca ctctgtagct ggtgtggcca tggtgacgta ttgttctctt
      421 taagctgtaa ataattgtaa caggtatgca catctaaaca aggtgactgt tctgcaatct
      481 ttaggaagag gaagtagtcc cacctcgtcc tccactccct cggtcctatg actttacaga
      541 gcatcctccc ataatccccc ctctgcccag tgatagcagc tccttgctct gttatagcag
      601 gggcccagta catctgccag aagagaagaa gattcaccaa gttcaagcgt atcagagaaa
      661 tggatcttac tgtgtaagtg gcttgaactg ccacgctgtt cttgaaacat ccaccgtccg
      721 cagtcacaag ttttattttg tcatccagct acctgtgatc tctgtctcga cttccgtttg
      781 ctccctttta tttatagctc catcatttgc cactctcatt tgtctctcgt gtattctgca
      841 cctgcgtcaa atgtcttaag actcgagggc tgctacctga gtccatttca gagcatcagg
      901 ctcctgtact cacttatgaa actctaggtt ccaaataagc gcttgatgaa gcctcataca
      961 aatttgtttc ctgatgattg ttgaggaggg agaaaaagcc tccacacttt taggacattg
     1021 ttgttctgta gtttctgcac ctttgcaa
//
LOCUS       KCLA01000428             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6952upu ultra-conserved element locus uce-4598,
            sequence.
ACCESSION   KCLA01000428
VERSION     KCLA01000428.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6952upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-4598"
BASE COUNT          236 a          242 c          177 g          273 t
ORIGIN      
        1 acttcttctg gaaaaagtgc atcgagcttc tctcctatcc tatacagtaa gtcaagaaag
       61 aagctctcat cattagactt cgattaaata tggcattagc tgacctcatc ttctgtgtaa
      121 gaaggcggtg aagggggcag tccaccattt gcagccaaca tataatctgt cttctctaat
      181 tagatatgct ttgcaacaag tgtggtggat ccatttattt ccgtactgca ataatgttga
      241 taaatccaac tttggctcca gtcccactgc tttcaaagcc ggggctccac attttcaatc
      301 ctggcctttt ttttttcccc ccttttctgc tgcaaaatgt caccaattta ctttagcctg
      361 ggggcccatt ttgagtttta ccgctaatat aagagaaatg catttttcaa gctgttacca
      421 cttaactgta ctgatatcag ccactccggg gacacaatat tgtttacaca tcctgctcta
      481 tggaataagc acggatgcca aaactctgcc tgggttgtga aggagacgtt tactctctgt
      541 tttatgagat ttcctcgatt tgtggctgtc tcgatggtcg taaaaacagc tgtaaatcaa
      601 aagagcacca caaaattgca ataacaactg tcgaactcag ctctaaagag cataactccc
      661 agcaacagaa ggtggaaggc ttttttctga tctaatacca ggtgtggagg agccctgctg
      721 agcctgtgtg cagcactgtg tctacccatg gtcactcaca tgccagctca gcccaaaccc
      781 tcttttttgg ctgctcccct gtcgcttgcc cccactctgc cccacacagt cccttccggt
      841 ctctctcctt ccctcttctg gaaaacagaa gtctttttca aacgtctgga gaacgcctat
      901 acaaataact gctgaatgca cagccctg
//
LOCUS       KCLA01000429             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6981upu ultra-conserved element locus uce-5830,
            sequence.
ACCESSION   KCLA01000429
VERSION     KCLA01000429.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6981upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-5830"
BASE COUNT          138 a           77 c          108 g          159 t
ORIGIN      
        1 tttatttagg acacctaatt aggatttcta atcaggagtc gtcaagacct ataattagca
       61 gggttgttca gactcattgc tttctcctta atggccatag gacatccaaa tggttttaaa
      121 ttatgtacca tgggctccta atcagtttat tgaacatcat aaattgttaa aaggagttaa
      181 tagcttgtgt ttcttgatag aaagtgctaa tacttgaggc agagaactca tcaaatgagc
      241 ctcattagaa aggggaggag ggagatttcg tctcagtgtc tcattttgtt ttagtaatta
      301 gcttttactg gattatccga tccaaatctt tattcagttt actctgtcaa atctagtttg
      361 cattttaaat ggaaaattga cacagggaac aatttgtctt ctggctaggt taatgggtcc
      421 tgctggaaag aggcactttt gaagactggg gggtgtcaca aaagtctggt gggggcaacc
      481 ag
//
LOCUS       KCLA01000430             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 6997upu ultra-conserved element locus uce-744,
            sequence.
ACCESSION   KCLA01000430
VERSION     KCLA01000430.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="6997upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-744"
BASE COUNT          200 a          126 c          127 g          211 t
ORIGIN      
        1 atcctccttt ccagccataa tgattctatg attctattct atgaagccta cgtaaccaga
       61 aaatgccgtg tgaaaacaag ggctgctggg agcagcagct ctgtgaaatt ccagctagac
      121 caaactcatt ccttgctgct tgagcgctga gctcactcgt cttctgcctg tatgtgcagt
      181 ccgaatggat ttctgagcca gctaagagaa agagttaagc ctgttctccc cttttagttg
      241 gcagaaagtt tgcagtttaa aattacatac tgactctggt gtagagacac aagaaattat
      301 agagcagaca ctgtccagga caacgtataa tttaaaatgt actaaagaat gtataccaca
      361 tggcaaagta agtgaagtgc ttcttcaaat ataagtgttt tgcatagaaa ggctgtaatt
      421 atccactcct agggaaatgt ttgcattcat tctaaatcaa tatttactat tcatctcttg
      481 tgttcaacaa aacaaggctt taacattttt ttgttttaat gaggtactaa gactacaata
      541 attctataat gtaattgtct ccgtgcaaaa tattgctaaa tcgtgttgct attttgggat
      601 ggaactgttt tttaagaagg ggtatcccta tttgtgagat gtttctgcac aactcaaact
      661 cagc
//
LOCUS       KCLA01000431             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7013upu ultra-conserved element locus uce-2172,
            sequence.
ACCESSION   KCLA01000431
VERSION     KCLA01000431.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7013upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-2172"
BASE COUNT          106 a           76 c          121 g          107 t
ORIGIN      
        1 gagcactgga ccaggctgcc caggggggct gtggagtctc gtggcagggg gcgctgtttg
       61 atggcggagt ttctggggaa caggaggagc cgaaaggcct ggtgtcaggc ggttatgtaa
      121 gacacaatct cgcctggaac cgcacaatga atcgggaagg atttatgtaa ttaattgacc
      181 agtcttaacc tgttatcgtg atgtaaggaa tttggaactc attaatttgg gccctgacag
      241 atttcatatt agagctggca aatatggatt gagcctctta ttcttgtagc agctggaatt
      301 tccatgacag tgacgattag tgaagaagac ctattgctcg agtcaaactg cctcttttgt
      361 aatcagcagc cttgctctgc attaaagggg taatgggaag gagtaaagca
//
LOCUS       KCLA01000432             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7027upu ultra-conserved element locus uce-2978,
            sequence.
ACCESSION   KCLA01000432
VERSION     KCLA01000432.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7027upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-2978"
BASE COUNT          273 a          149 c          156 g          250 t
ORIGIN      
        1 tttgataatg tacttgactt ctgtttttag aaacacttat atagaccatt gtttctatag
       61 ctttttaaga aaagaaaact atctgggaaa atagaattcc tcaataataa atccatccaa
      121 gcttttggca tcctgtttct cagtgtaaat agcatagctg tatgcaaata tctcctttgc
      181 tttataagaa aacctttttt tgttagcagc cagtgatgcg atgctgcaaa tggctttgta
      241 aaggacagca tgaggtggaa ggagttgggt ttgttgcttt tggtaaatgg tttttctgga
      301 taatgttgta taaaaaggca agaacaaaag caaggaaaac aaacaacctc tgtgggactg
      361 aaatcctttg tatgtgttgt tatttgcagt gcatgccaag atattcatgg gcaccagagc
      421 caacctggca agctaattaa atatataaat gtatgtgttt aaaacagcct tataaggagc
      481 attggaaatc tgcaagatga gcgaatatct tataacttct tccgcaggtg cgaggatagc
      541 tacaagccat ggactttctg tcctgcttct tgtttgtggc tttgtgaagg gtgctttgct
      601 ttaatctaaa agtgctgact ttttccaata tcactttctc ttcttaaagc aaagagcaaa
      661 tcgcctgtaa aatccatgga gcggacagca aagttgaccc taacctccaa ccaccactct
      721 gcacccaatg tactctaaat ctctacacaa ggagcacctt cttcaggaag tacaaacaaa
      781 aatactaaat aaaataaata aataaataaa taaaaagaag aggatacc
//
LOCUS       KCLA01000433             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7042upu ultra-conserved element locus uce-6391,
            sequence.
ACCESSION   KCLA01000433
VERSION     KCLA01000433.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7042upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-6391"
BASE COUNT          218 a          119 c          125 g          238 t
ORIGIN      
        1 ttataatgtt ttatttattt atcagggaga gctgctggag tgatgtaaca gggcaagcac
       61 cacaactaca aacttccagg ggtacttttc tagttattta ctgtggtacc ttgtatttct
      121 attactaggc agtttgatcc ttcaaacaat cacaatctca atgtccttaa agtgaactga
      181 tgtactgtac ttaatagcct ggtgacttct tggattagac tgatagagcc ggtgatgaat
      241 agggtaagta tagttaacag ccattcttaa acaactttga gtgtcattaa ttttgttata
      301 ggacagatta atctgaaatg tcaggacttg ctgtactaga cctaaaattg tattttcaaa
      361 ccaattttaa cagattgtat ttcactcttg acacaaaatt cattgactca ccttagattg
      421 cagcttttat tgtaattgta ccaaattaaa tcggggcatt aggaccctag aaaactaagt
      481 tgaagttaga gaaaggtagc tgcactgaat ttctttctat gctaatacat ttttcttctt
      541 aaaacaggct caaacgcatg gatactgcta caggttaaag agattttaac tctcccaggt
      601 atgtaaatca tgtaaatcag atgtaaatca tgctgagaca caggacaata cctattctgt
      661 ggttgtctta ttaatatcaa cagaatagct gcttttcttt
//
LOCUS       KCLA01000434             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7057upu ultra-conserved element locus uce-4742,
            sequence.
ACCESSION   KCLA01000434
VERSION     KCLA01000434.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7057upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-4742"
BASE COUNT          230 a          211 c          238 g          223 t
ORIGIN      
        1 ttgaaatggg tagcggggga aatttccaga agctttaagt aaactcagct cttccttctc
       61 tgaagaagtt gaagtgaaga tcgagggaga acattgccat ggcaaatggc acggctgcca
      121 gcgaggacag gtcgcctcca tcactccaaa acccgctgga gggaacctca acttcccacg
      181 ccctgttttg gtgctcacgg agccttctca gaaccaactc ccagcctggc tgaggacaac
      241 acgtcgaggg agcaggagag ccccatttct gcaactgcag ccccgtgagt tacgcttccc
      301 gcaggggttg gtaggggagc aggcgccacg tgtcccgcag agctctttta ccatcagtcc
      361 cttctcttat ttgcaggaag agactcctac ttattgaaat attacccaag actctagctt
      421 tccccacaaa ttacacactt tttgcataaa tgtgcctaat tacctgaatt cagttttgat
      481 tagcagtgtt aattgatgca gctgcggatg ggctctgttt acctaaatta ccatgtgcaa
      541 acagcaatac gtctgaacgg gaatatgcta aactgaaaat actcattagc tgagcctgat
      601 tgctattcca gtcacagcgc agggctgctt aatgaaagcc tggctgtgtc agggccgtgt
      661 gagatgcagg cagaaatgtc tatattacat acgatttcta aatttaattc atgggaacag
      721 atggggtgtc agccggggtt cttctccatt gcttccagta ttaatgcggc tggtttactc
      781 tactggagac gcctttgagc gtggggatgt gagagagaaa gaagggtgcg tgagagggag
      841 agagaggagg gagaaattcg tgcgtgcaga caccgtgcca gccaagaact gctggctgct
      901 tt
//
LOCUS       KCLA01000435             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7073upu ultra-conserved element locus uce-5664,
            sequence.
ACCESSION   KCLA01000435
VERSION     KCLA01000435.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7073upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-5664"
BASE COUNT          126 a           85 c           81 g          118 t
ORIGIN      
        1 ttcagctctc atcctctgaa attcccggtg ggttaaaggt ttcagagggt ggggaaagat
       61 aaaggtctac ttctatgtgc attatccatt aggaaagtgc aagagaggaa actttgaatt
      121 tgaagaacaa acagtaatga gtccaacatt ttacatcttc aaagagcaaa gcaggtctgc
      181 gagcaattaa agttctggga cattaatacc ttctgaccct gcggaaaagg gcaatcaaat
      241 tccaatcacg tctaaaaaac atctggacaa atttgagcaa atgatttttc aaccttccat
      301 ctatttcttt acattacact gtcatcagag gcaagccacg tcccagagca ggaagtaaac
      361 gaaggctctt tgggctgaga tagtttttct cccctttctt tctttctttc
//
LOCUS       KCLA01000436             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7089upu ultra-conserved element locus uce-77,
            sequence.
ACCESSION   KCLA01000436
VERSION     KCLA01000436.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7089upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-77"
BASE COUNT          370 a          201 c          162 g          255 t
ORIGIN      
        1 aaggggggga ggggtggaaa ttaacaatgt cattattact catttttgag ccaaattaaa
       61 tatttgaaat gcaatctaca tattagtagg catttacagt acagtttaaa ataaaactca
      121 catgcaaaaa ttttgtaaca ccctgcaaca ccaatgatca acaattaatt aaaatacatg
      181 actatcaagg ttcttgcaga acttacctgc taatattcag aattcattaa taattttgat
      241 aatgagtaac agtctatttg tctactctat attggtaaca tatcacagtc tacttttgca
      301 ttaaatcaga gtctaaacca ccagtgtgta ctatcactag ctttttccac agcaaactac
      361 ttattacaaa gaaaaaaggt gcaaaattac ctctggatga gcctagcctg gaaagtgatg
      421 agcgccgaaa ggatggataa ccaaagtaac taatatcttc tgaaaacata gcatcagcat
      481 caataatgac acttgggtga gcagaatgta tgtcagcatc cagaagagac ataagatcct
      541 ctataagagg agacaagggt cttaagtgaa taatcagcta cttaaaacat cagctagaga
      601 gaccatcaac taaacaaata tcaaaacaaa aaaatcctat ctattaattg aatttctgct
      661 cttcagattc accagtgcaa actcatgtgc ctcctatgca actacatgta caatcaagct
      721 tggcaaacta gtgaagaaaa ccagtttccc tacaagaact gctctgtcac taaccacatt
      781 gcccagaaca cattatcctg tgagccagga attcaacttt agcctgtcac ttaaagaaca
      841 aagcactagg atacaagaga tacatacaca cacatgtgca cagacatcca tgcacgtaat
      901 gcagaactcc aaagatgacc tagaattcag ggaggacaga attgatgatg aaagctggcc
      961 ttcacaaagc cacatctttg acgtcaaa
//
LOCUS       KCLA01000437             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7104upu ultra-conserved element locus uce-401,
            sequence.
ACCESSION   KCLA01000437
VERSION     KCLA01000437.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7104upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-401"
BASE COUNT          227 a          159 c          227 g          204 t
ORIGIN      
        1 ctgattgact gaatgtttgc agtcatcagg tttgctctct aatccgctca ctttcagctc
       61 agcatccggg aggactcttc cccaaagagc tatacaagac cgcaactggg gtttgccaat
      121 ggggactgaa ggagtgggaa aagtggggaa gggggtgctg agccaaaagc agaggtgttt
      181 ttaagatgct gatgtaaagt gctattaaaa atgctgccca catcgccttt taaccctcaa
      241 agatatcaga taactcctgt ggtgagatga agtggctgtc attatctgcg aaggtctgta
      301 tcatattgga atctgccggc gcaggtcagc gagtccgtgg tgttctggtc ccagctccag
      361 cactgaatta catttcccag gcacaatggc tgtagaatgg gtgggtgctt tgtcatttaa
      421 actgcataaa gaggcagaaa ttgattttta ttgtggatct tcatatctaa taaagctctg
      481 aggggctctt ttcttctccg attgaatggc cattgaatgc tttcaatcta gttctgtgtt
      541 tcatgcctaa actgaatagt ggcaggagga aaatagatgg ggggaagaga ggccaagtca
      601 ctttccagat tgaaaaggat acagaagaga aataaataaa aaataaagta aaaatgaatc
      661 caaaaaaaag ccatttcagt ggaaagggga actttcctga tgccgaggga aaccggccgt
      721 gtgcagtacc caggcgcgtg gctgtgcctg cagcagcgtc cgcgaggatg cagcagcgtg
      781 gagacgcgtg gcgttgtgag aagacgtggg actcagg
//
LOCUS       KCLA01000438             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7120upu ultra-conserved element locus uce-4033,
            sequence.
ACCESSION   KCLA01000438
VERSION     KCLA01000438.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7120upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-4033"
BASE COUNT          106 a           69 c           93 g           90 t
ORIGIN      
        1 aagctgcaag cagggtgttg gaaattaaac taaacccgga gtccaggcac aatcaccttg
       61 tgtctgggaa cgccaagggc tttcctatca aaggaaactg aaggtcacac ttttcctcat
      121 tgatcttgca atgtttgtta attactctgt cactgatgtg gcgaaggata attaaacagc
      181 tctgtttata tcttatatgc ataattatgt gcgctgccac tgaactcgtg aagactagag
      241 aatgtgcctc tccagaaggg gaacggacag acggagatga gtttcggctg cgttattaac
      301 aggaggagga aaacacgggc gcacacaaaa ggaggaaagt ttgatggatt cgctgagt
//
LOCUS       KCLA01000439             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7134upu ultra-conserved element locus uce-3144,
            sequence.
ACCESSION   KCLA01000439
VERSION     KCLA01000439.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7134upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-3144"
BASE COUNT          271 a          206 c          222 g          217 t
ORIGIN      
        1 cctcttcaca gtcccagcac atgttccctg tctcatctca gcatcctcag gacatctttc
       61 tagggaatta cctttcctag atcccatcac ttggacagaa gctggaatat gacaaaagag
      121 gagcaatgca ctctagcaag atctgtgaaa actcaatgac agtctcctcc tgccccccag
      181 tagaagaaat acactggctg tgaaagaatc aactaagata aatgactgat gccacgtgca
      241 gtctgttcag ttgtcttctg aatggtgaaa catgaacaca agcattgcac tgtcagttga
      301 ttgagctaga gcctaactct gccttgcctg aatacagagc tctgcccgag caaagcaagg
      361 tgggtatagc cctctaagta gcccagccac tcaacattag tgaagcccct ggtttctaaa
      421 cactgagttg catcgaattt gaatgctcca ctgatgactg aattggttag gaatacaact
      481 gaacagcagg ctgaatactc agtgaggtat tgtgggtaat tagagattaa ttacaatccc
      541 atagtttgta tcatggttca gggtcagcac agggtcagtg cacatggcaa acttagagag
      601 ctgtgactag atggatgacg ccagcttgga gtggctcggc aaagtgaagc gtatagaaat
      661 gaggagccag caaggctggg gagtggactc gcagccaggg cactggcgac agcagtgaca
      721 tggtgttgtg gggccttgag gcactgagaa aatgttaaca agcagcagag agaatacagc
      781 tgcactaact atccaactgc aaccctgact tttctaatta accttttcca ggctttctaa
      841 gacttggaaa atctggggca ctgtccggtt gtcaaagaaa accctttaag aaagagaagt
      901 agtgaggaaa actgcc
//
LOCUS       KCLA01000440             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7150upu ultra-conserved element locus uce-4164,
            sequence.
ACCESSION   KCLA01000440
VERSION     KCLA01000440.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7150upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-4164"
BASE COUNT          173 a           90 c           92 g          165 t
ORIGIN      
        1 caggctactg atgattagct aggcttttcc agcaaaattc ctttctaatt cacgaaatct
       61 actgaaaccc tcttctttta tttcagttat aaggttcttt tttagattgg aaaaaagtag
      121 catttaggca ctgacaatat tggtttaaaa acctcttatt atctggaagt acatggaaaa
      181 tggctcagct gaacttgcat tttgttttag atgcttagtg attacaaaga agataattta
      241 tgactgacat acttcttgtg ccaagagaag agttgaaaga acctccagtt acctccatta
      301 gactgataga gaagtctaaa agagcattac actctgcagt gccatctgtc aaaatacgta
      361 agtgaaataa tagtagcaag ctgtcaccta ttgcttagtg ataagagttt tagacaaatc
      421 aaaacttcta cactagaaat ccattttgtt atgtgatcct ttcagggaag tggggaactc
      481 cagtaaataa aagagaaatc ctaagtctcc ttaatttgca
//
LOCUS       KCLA01000441            1040 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7181upu ultra-conserved element locus uce-3259,
            sequence.
ACCESSION   KCLA01000441
VERSION     KCLA01000441.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7181upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1040
                     /note="ultra-conserved element locus uce-3259"
BASE COUNT          304 a          220 c          238 g          278 t
ORIGIN      
        1 ctgcttgtga tgtggaaaac ataggcacct gcaaaagccc tccacctgtt tttgctcaaa
       61 gtgacaggcc cagagaacaa tgtgcatgtt caccacttgt ctgtagggag cgtgatgtag
      121 ctgatgcaat tcccatctcc agcacacctg caaggtctca ttgatctgct gctcagtgct
      181 ctgaaaactc agaaatctat tatcagtgtg agcacgtgct tattgatcag gttacctgtg
      241 tctgctccct gcgtgcgcct aattgcacca gtgtatgtaa atgtgggcac atgtgggcac
      301 acgctcgcgc gtacaaggtt gttgtgtgtg tgttaaaggc gttaggtatt ctttttgttt
      361 tacaaaactg tacataaata aaaggaacgg accttttcca tgaaacgtga gtgcagaaac
      421 actcacaagt ggccaagagc tgctaaataa ttaatcaata gagcagtgtg gcagtttgaa
      481 atgtaaatgt gatggatgaa ggtgtgatgc ttgtcatcaa gcagaaaatg atgtgactgg
      541 aatggataac ctgcggtacc tactgactgg caaaagcttg gacacaaaga taaggcaaag
      601 ccatcagaaa acagccctgg caacccctaa ttcttgcctt tgacctgcaa ttcactttca
      661 tgtccctgtc ccagcagaga tgtttaaaaa aatgatgaag agagatcttg gggtgggaaa
      721 ggggagagaa aaaaaccatc tgaagaaatg atacctgaca aggctgcagg ctagattctt
      781 gagaacacct ttcttttctt tatgttctcc ttctgctgtt aaataaaaat gcagctcctt
      841 ttttcccttt cctttcttcc aaaactctcc tgagccgttt ctgcaagtgg ttctgtgact
      901 cgggagctga caacagccac atgcaaagga acaaagaacg agagtgacaa ttcagagtgc
      961 atgcaggtga gaaagacacc ttttacttat caaactaggc tgcaaaaaat gctcttctta
     1021 ctcagtgagc tagaaataga
//
LOCUS       KCLA01000442             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7196upu ultra-conserved element locus uce-4364,
            sequence.
ACCESSION   KCLA01000442
VERSION     KCLA01000442.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7196upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-4364"
BASE COUNT          109 a           66 c           92 g           88 t
ORIGIN      
        1 tggggtaggg gaggggggga agggggatgc tggagggctg aaggtgggaa aagcaagggg
       61 cagagtgcca gctaggctgc agtattcagt tacacgtgaa atgatttgta attctgagta
      121 atcacttagg acaagccctt gcaccatttt atctatacat gactctaggc caaagtcaat
      181 actcatagta aaataatgag atgaagctaa ctgagccctt ttattaatgc tccaaggagc
      241 aaatctgatg ctagagcttc tcccatggaa agtatccact tcttcctaaa aatgaacaac
      301 tgggccatga tggccagtag taaccaggtt tctttcctct gaaaacaggt taaaa
//
LOCUS       KCLA01000443            1110 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7212upu ultra-conserved element locus uce-1463,
            sequence.
ACCESSION   KCLA01000443
VERSION     KCLA01000443.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7212upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1110
                     /note="ultra-conserved element locus uce-1463"
BASE COUNT          304 a          201 c          212 g          393 t
ORIGIN      
        1 agttctctca atctccctga ctatgagatt gggattttgc cctgtgtata taagtcaatg
       61 cggaatgtga aatcttcatt agtgtgtgag agcagtaaga taatctgaat ttttgctaga
      121 gatacaaatg acgtaatacc atgctgctac tgttttgtgt gtcagtttct ttagaaggaa
      181 ccaagtactt ctgttacaac actgacagta ttttctagtt ggtctatgtt tccaagaggt
      241 atttgttgat tcctaattaa aacacatcat tctgtaaagt gaaatagagt tatattttca
      301 ggctatgctc ttttgttgat ccctgtcctg tctttacatc tcccttttat tttctttttt
      361 ccttttcatt ttcatctcat ttttcatcgt gatgtagtta attctttttt tcagctcatg
      421 ctacactttg tcttgtctat tgctatgtga cagaaaagcc agagacattc catgtctggc
      481 agtgcacctc cagggacatc ttttgaactc tcataatttg tatttattgc cacccacttt
      541 gtaagttcac agtttaattt gccagcagtg gcagtgttag gccgacacag taaaacaaga
      601 taacgttaaa atgtcagaac gagagggggc atgaatgatg cattacccac tgctagaact
      661 tgcacttgtc atgcctttcc accaaagtga tgttaactac cttttgagag ccttatctga
      721 ctggtattac tcagaaatag gatcattagt tcactgctct gattagaagg ttgctatggt
      781 tgattaactc ttctgaaact gggatcacgg tgggagcata acatgaatca cactggatta
      841 tgcatctaga actaatttta taattttttt tttcacttat ttatagccgt ttacatatgt
      901 atttccttaa ttcgctcctg ggctgacaga acagagggtg ggaaaaaatt gagcatattt
      961 taatggcaac attcaaggta gatttcagta gagctgtttc tccttcagca gagtgtgtta
     1021 acggtgacct attatgcaaa tgactataaa atcaggaaaa actgcaattt gatgtagttt
     1081 ctagagttgc acttagtaga agagtcagca
//
LOCUS       KCLA01000444             976 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7228upu ultra-conserved element locus uce-82,
            sequence.
ACCESSION   KCLA01000444
VERSION     KCLA01000444.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7228upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>976
                     /note="ultra-conserved element locus uce-82"
BASE COUNT          273 a          185 c          175 g          343 t
ORIGIN      
        1 tatctagagc tctgtgtaag gaacaggagc tttgtctgaa cttcagcaga cactggcctt
       61 tccttttctt gctcagggaa acttttgact gtgggtttca aaacagcata aagcacctct
      121 gtatttctcc aaaagggaca gagctgcttg cacagggaaa taaaatactt ttctccgcac
      181 cttttcttag gagtatgcaa aaatcccatg ggtatttcgt tatgaattgg actcttctgt
      241 tttatagctg gtagtattca tgcttattac aatgccatat tatggccttg gacacttttt
      301 atgtccctat aacatagcac cctagagaaa gatgattcac taggcaagaa ccagtaaact
      361 tgctacagaa tcagcagaat acttttcaca aaagtgcata aacttacatt cttaaacatt
      421 atcatccttc accttaacaa gcacagagaa aggttccact ggtttctatg ccttgttagg
      481 tctatcatct ttttaattaa tagtgttttt acgaagccgt ctgaactgtg tcatttccat
      541 tatcagaaaa ctattgccat taatgaataa ttttcatttc tgatccttga tatcatgcta
      601 gttgatctcc tgtttccatg ccgccgaatg atagcatcgt tttctgccca cgatcaaatt
      661 taatttggac tctgattata ttatgctgtt gcgactgaag tgtcaatttt tgtcaggcaa
      721 ttaggagcta taacctgtga agttaagttt gataggcatt gtaattggat tgttacagta
      781 atagcttgga acattccctt tttttcttgc ttctttgatt cttgatgcat actttagttg
      841 agagaacaaa gacgttttgt tattatgcaa ccataggatg ttcaagacaa caagatggag
      901 ttcaggtttt tccattttcc ccagatggac ttaatttgga tttagttttg accacgaatt
      961 atgccatgat tttaaa
//
LOCUS       KCLA01000445             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7243upu ultra-conserved element locus uce-6459,
            sequence.
ACCESSION   KCLA01000445
VERSION     KCLA01000445.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7243upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-6459"
BASE COUNT          245 a          140 c          137 g          255 t
ORIGIN      
        1 tacagtttat caaggcaccc aatgatgtta gatgtggatt ggtactatat ccagcagact
       61 tggatatact tttcctcccc atggaaggct ggctggcaat caggttagtt ctctagaatg
      121 gacattcatt tgttaaaaca ccacatttct aacagtgaca tcttcaaatt ccttcctaca
      181 gttcatttct gtaacacaga aatgttctgt ttgtgggctg ttgtcagtca aattaagagc
      241 atgttgttta atacttgtcc tctagacagc aaaaataatt gcaagcatct tgatttgctt
      301 cttttagtgt atgtcaattg tgtgcataat atttgaaggt taatagtgtg acagtgatgc
      361 accaaaccat gcaaacggtt tctttctaac aatggacaat tcccctgtga aatggattgg
      421 aaagaatgcg gtaacataga gaagactgta ttaaaatgtt ggcccttcaa tttgatgaac
      481 attggaaatg ctgtttgctc aaaggcacca ttacaattat aaacatctat ctataaattg
      541 tcctgacaat ggctatagtc ctctgcatgc acagtcatgt atattattct atttgggaac
      601 ttgactatag cttacttata ggatctgttt agataagaac ccataatgag aagaattgaa
      661 ttctcacatc acctgaagag cagcttctat acaaaaaaac tcaagtcaaa taagttgctc
      721 agtaacattg tcatttttaa taaaaatgct attagcacgt gaaacttcta ctatttc
//
LOCUS       KCLA01000446             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7259upu ultra-conserved element locus uce-4643,
            sequence.
ACCESSION   KCLA01000446
VERSION     KCLA01000446.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7259upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-4643"
BASE COUNT          190 a           80 c           94 g          173 t
ORIGIN      
        1 taaattaacc actctttcct agcccccttt aaatggaagg aactgaaaac acaataagga
       61 tataattaat tacggtctta gtctcagaga aaaattacac ctttttcgat tagtgtgaaa
      121 tataagtgtc aaatcagtaa taaaatcctg atcaataaaa caataataac tatgttgtta
      181 aaagcggacc tagaaaggtg ttcgtggcaa cgtgttttag gggttagaaa cccttttaaa
      241 ataaacggat ttcatcttta cactgtgtca tctaaatcat tacaatgttt gtgtatacaa
      301 ttatcatcag acgataaatt gcagctattg aatggattaa gtttgaactt tttgacctca
      361 taaatctgag tttgtcatag ctttagcaaa tgcttgtgta acaatcagtt gattacatgg
      421 cagagcagat gtatgtatgt taactggaaa atatgaaagg accagggtaa ttcaaagttc
      481 attggaagaa gtttataaat gtctggtaat atcatggtaa cacattctca ttgtacc
//
LOCUS       KCLA01000447             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7275upu ultra-conserved element locus uce-1055,
            sequence.
ACCESSION   KCLA01000447
VERSION     KCLA01000447.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7275upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-1055"
BASE COUNT          187 a          162 c          143 g          185 t
ORIGIN      
        1 atccagctga aatgagctgg cctagaaccc tatcaagctg agccttaaca ttaggaagtc
       61 cattcggtgc tatcttggct ttagggccca gtgtcacaat ttggagcatc ccctaatgat
      121 tgccgcttcc tttttctcta aaggcagcta acagcttaga cctagttcag cgaattccct
      181 tgcaaggtcc ttggaaaacg gggatgggcg gggaggacaa ttgattgcgc ggccaacttt
      241 tttgttcgtg cctgcttact gatttttgtt catttcataa ataaacaagg catgaataca
      301 tcaacccaca aaccataaac aataaagaac ttcatcctgt aagtttgcta cggccagcag
      361 tttgtggctg aacctgctat ttgtcatatg ataaatgata aagtgattgc catttgtcac
      421 ccaacacaca ggagaagtag tcagctgtga atcccaccga tgcagacaac agtaaatact
      481 gctgctcttt tagtgacttc cgcacgcctc tgcttaacta cgaggaaaga ttttggtgac
      541 cacgtgtgtc cgtttcctac gttaaccatc ccacaaccat aaagaagatt tacagtctac
      601 aatctatcct taacatcagt tcgctgcgcg cagcaggaaa agctccttct gcctagaaag
      661 gtgttcggga aagttgg
//
LOCUS       KCLA01000448             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7291upu ultra-conserved element locus uce-5065,
            sequence.
ACCESSION   KCLA01000448
VERSION     KCLA01000448.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-5065"
BASE COUNT          235 a          276 c          227 g          248 t
ORIGIN      
        1 aacacccacc tcccccagcc ttaggcacct caggagggct aagtcttccg ccgcagtcaa
       61 ggtctgtcag gctgcaggtc ttggtgagaa attgctattt cacacaacgt caactcacca
      121 cggggtgacg gggacagctc gtgatccact gcacaagatg ccatcattag ctcgtgcccg
      181 gccttcccct tcccctcagg gtgccacata catgctcagt cagagacttg gtgcacgaaa
      241 ccaggagcag cagctttgta aataatggcc aaccagggga gaaaagcccg tctacacatc
      301 tcctctcctt taattccctt gcagtgtggt gattctgcaa gggtgggtcg gtcgtagctg
      361 caggtgctcc cggacggggg aggagcacaa aaatgaagtt gtttgcggct tttgattcca
      421 tccctggaat tatttacagc tgcaggcgat attaaactat gtagagcaag tgtcctcatt
      481 tacatgctaa ttcatttata ccctctggat tgatttctcc aattcatttt cagcccacta
      541 actcttctga tatgaattat attatcacct ccagaacggc agcagggaaa tgtgacgaag
      601 ccaccccagc tcttctgatc tctaattgcc ctcgctgttc agagccggcg tggccagctg
      661 cagctttgcc tcatggctac cagtacccaa gctccttctg tctcctggag agaaagcagt
      721 ggtgtggctt gaagagcaaa ctgtcccacc tctattactt tgtcctactc tggggaagac
      781 ccaagtgagc ggaccttggg cttgctgcct ttggaaatca ttccctcctt ctgcctagga
      841 ggaggaatca cctcatttca gagagaaaat ccaaagtcca tctgtgagcc ataaggaaat
      901 tgaattaatc cttgacttcc caaggggctt tcgaggcttc tcagcttttc acagcagcct
      961 cacaccatac ctggcagaca cgacac
//
LOCUS       KCLA01000449             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7307upu ultra-conserved element locus uce-3152,
            sequence.
ACCESSION   KCLA01000449
VERSION     KCLA01000449.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-3152"
BASE COUNT          195 a          152 c          143 g          160 t
ORIGIN      
        1 tgggaattga aatcatgaaa agcaacagaa ctgcatttga attaaagatg aggctacaaa
       61 ggtctccgac gtctgctccg ggctgattag cacaaggcgc gtgtggcacc gttgcagcac
      121 agagcgaatt ttacagcaca cgttcgtgga taaaggcaaa gcgttcacag gagacaagga
      181 agctggaaga ctaacacgtc tctcccttct cctgacagcg agcagggagg tcacgctctg
      241 gcaaccattt tctgcctggt ccctgcagca atcaccacag agttaaacac tctcgcgctc
      301 cccaaattcc aagccctgcc actgtatcaa ggttatctat tattggcagt gacaggtgaa
      361 aattaatctc ctaattattt cttgctgcgt aatctgcact gaagaagtaa cataaaagga
      421 ttacagtaca ccctcaacgg aaggctttgc gagagagcca atcatccagg gagacagaag
      481 tgatgtgcta aagagatatt tatggcagat tcccaaccat tttgaaggct gactacacta
      541 caactaaccc acagctttag agtaaggacc tacttgcggg tatcttaata gcccaaatgc
      601 tttttgttat tgattgttcc atggaacaag attgatactt attaacttcc
//
LOCUS       KCLA01000450            1145 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7323upu ultra-conserved element locus uce-1150,
            sequence.
ACCESSION   KCLA01000450
VERSION     KCLA01000450.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7323upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1145
                     /note="ultra-conserved element locus uce-1150"
BASE COUNT          370 a          203 c          271 g          301 t
ORIGIN      
        1 taaatctagg aaaacctcat tgttagctca tgccatttca gagatgggag tgtttttaaa
       61 ataatctgtg ccgctgcgct gcaaggattt gtagagtgaa catgggaaag aaatcgggag
      121 agaaatgaga aaaagggata taaaaagcat ggaggtggct ttcctttaat aatgcataca
      181 tagcaatagg ggactttgga tagaattctc tcagctctct taaacccgat ctaaggttaa
      241 tttataataa ataattatag ttttagtagc aaaatgagac cctgtgaagc tgagagggaa
      301 ggcagtaata cacttttaaa agctggacat gctgttagtt tctgttacga gcgtaatagc
      361 taagactgtt gtagatcaga catcgacact gaaaaaagca taaattcata taattaattt
      421 tgccattgta aaaatcattt gctaaaattt gcattattaa cattatcaag tcgctggttg
      481 gtgagacatc agacatgacg agtgagaagg gcagcttagg gagaattggg ctttaaaccc
      541 tcagcagatc ggagttagga tcaaaggcgc ttgttttatg tggctgtgtg acactttgaa
      601 gtcttgactg cacctacagc actcatttca tcaggttcac tggtgtctta atagcagatc
      661 aataagtttc aaagtcggag agttaatttg atactagtgc tgatgtggtc gtgctgggga
      721 agcagagaga ggcagacagg gaaagcaagc ctattaacca tcctgatcgc aagaggtgtg
      781 taccgatgtt gatgggttcc catgcaaatc caaattgtaa atattgaccg aaaatttgaa
      841 agctgcccgt actaacggca tcggggtgtt tacattattg aaagagattg tatgcaagag
      901 aggctgctgt gctagccctg ttatccagcc aagcaacacg aagttacaag aaagttcctc
      961 cagtaacgag aacaaatgca cgcttctgag cccctaaagc aacacatcct ttggtgatat
     1021 ttcctgcatc aaactgccta cctccacccc caccctgaat gaaaataaag acatacatat
     1081 agtggggagg ggggagggta gaaagagagc gaaaacacag tgggcaccac attataatag
     1141 ctgat
//
LOCUS       KCLA01000451             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7337upu ultra-conserved element locus uce-664,
            sequence.
ACCESSION   KCLA01000451
VERSION     KCLA01000451.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7337upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-664"
BASE COUNT          300 a          177 c          156 g          305 t
ORIGIN      
        1 aagagggact gctaattctt aaatcatcca gacagagctt acacaggggg acaattctgg
       61 catattataa gtgttcacct tcaggaaaat tctttgtcca gtgtgtcgtg gtgtctcaat
      121 gctacagcaa aatggttggg tgtggaatgg gtaatgatta tcataaaata ggaaagaaaa
      181 ttaatgaaga gttacaaggc acttaaaaat tattttgctc taatcttact tatcctttgc
      241 tctttctgta agaagtgtcc tcagaggagc tttccctagt tcaacagcaa aaatcaatat
      301 aacagttcac atttttcagt aaaatctggg ttattatgat tcctttggag tttgaacctg
      361 tgatatttta tctcgacatt atatgacatc attaaagaca acttatattg tttttgccta
      421 tggttagata tcatgtctgc ttaatcaatt ccattatgca ttcaaccatc tatgacacat
      481 caaaggctaa taagattttt ttaaaacttt gcttgcttaa aatgatttcc ctccagatca
      541 agatgcagag cacaaaatat taatcagttt aaataaatat caagactacc caaataatat
      601 gaataattgg cacagtgcag tgcctactgc ccagttccca acagctggtc acactggcac
      661 atggcaccat ctcaacagtc tttgagataa tgactttggc atctgccgat gagcgtttgc
      721 tactgcccac aaaatttaca actcacaagt gggaaacaga gcctccaaca gaactttttt
      781 atgcaaggtc tttgaaattt attaatgtaa tgcaaacaca agccttccaa cccattaaat
      841 tgttgatgtt atgcgaatcc actctggaat tgcagatcct cattaacatt atttgcatgt
      901 taatctgcat ctttttaatt agtgatatta tttatgca
//
LOCUS       KCLA01000452             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7353upu ultra-conserved element locus uce-5635,
            sequence.
ACCESSION   KCLA01000452
VERSION     KCLA01000452.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7353upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-5635"
BASE COUNT          256 a          200 c          172 g          193 t
ORIGIN      
        1 gaagagtctg tccctattag tgcaaagcag tcgatgggag gctcagtccg tccgactgta
       61 gtgatgaact atccgcacgc tttcgccaac taagacactg gtgtgctgta agccacccaa
      121 caataccctc acggcgagga gccctggaag tgtaaacatt ctgatgaagc agaatgattt
      181 agagtcacag cgaaaaagct ggagtaagca aaaagctacc ttgaaaacct aataccgacc
      241 ctatcccaaa agattgcgct atccaagggg atctggaata ttaattagga agtcattgca
      301 ggcctataaa aatcatccca taattactct gaaaaagttg ccatttcaaa gctacccagc
      361 agaagagcac gctggattaa ttatgccaga ctgcagcaat aaccttgaat taaagctgca
      421 accttctatt tttaagaaac aattgccttt ctggttgatg aaacctgtcg tcccatcagg
      481 taacagacgt gaccgggaaa gagaaaagcg ataatgagtc gatccaagct gtttgatacg
      541 ttccaaatct tcctcccaca gagtggagct gccacaagct acatctccag tctggttctt
      601 gaaaactcca tctcctccct gatgggtgaa tgtgccccag acattagggc cctttccatc
      661 tgcatccgag cctcctgctt gaaaaacaga gctctgctgt tacacttctg acatcgaaag
      721 acatatgctg aatggaagta gtagtcacaa aggaggcaca atcccctcaa aatcatagag
      781 tcatagaatc atggaatcac tagggattgc cttaaacacc t
//
LOCUS       KCLA01000453             941 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7369upu ultra-conserved element locus uce-3308,
            sequence.
ACCESSION   KCLA01000453
VERSION     KCLA01000453.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>941
                     /note="ultra-conserved element locus uce-3308"
BASE COUNT          283 a          221 c          183 g          254 t
ORIGIN      
        1 ggggtgacat aaataaaagg agcgattgtg cagacattgc tacatctagg taggtgatac
       61 agctctcctt atcggagcat tctgttccct gaacgctgaa attctcttca tcatgtttta
      121 gaccaagtag gaattggatt catgggagaa aagctgtgaa aagcttaaaa cccaatttta
      181 actttctatc ctgacactat agtgtttcca tagaaacatg atgaagacca ctcaagccca
      241 gcatttttta tgtagccatg tttggcactg tacccctgcc tcggacaacc tattatttca
      301 taaatggatg ctttctgcag cttgttctgt gcgggctccg atgaagaggg aaaagaaaaa
      361 gaatactgga tctttaacca gttcccttgt ggccccctcc cttttttgtt ggtaatattt
      421 ctgtcattct gccagggtat atggtacaaa gggttacact ttaattgagc tgtcagcatc
      481 tccaacaatc ctataaaact ccgattatgc acggcggggt tagtgacaca cttgttattg
      541 tggatgccct atttgctaaa cccgagcccc ccccccacag gtcacataac ccacgcgacc
      601 ttcctgtcat tagccgcgtc tattcctacc tcactgctgt gaaaatcaca caaaaaaagg
      661 cttcaaagcc cttgccagga ctgaattcga ccaggagcta atcacccaca aatccagctc
      721 aaatggcaat aattggctaa actgctcacc tctccagagc tcagcagtaa tttgggataa
      781 taaagaaaag aattattcag ctaactgccc tgaaatgtat gctttgtgac cgacacactt
      841 cacattttaa taatgatgga cacaaaatcc aatttaatcc agcatctcct gaataacgaa
      901 accaagagca ctggtgggtg gaaaaaaaaa aaagaagtgt g
//
LOCUS       KCLA01000454             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7384upu ultra-conserved element locus uce-1511,
            sequence.
ACCESSION   KCLA01000454
VERSION     KCLA01000454.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7384upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-1511"
BASE COUNT          189 a          114 c           96 g          176 t
ORIGIN      
        1 agtactgtgg acaggaatcc agacttgtcc caacagcagc tatgaaataa ttccagtata
       61 tgtgcactgc aattcatatg tcacatacat gtgagttagt ggcagtacat tctgcaaaat
      121 atgccacatg atagacatta agtcactgaa ctccaagaag cactttcctg tggctacctc
      181 ttgatgtcta gccagcatgg gctgtttaaa agggaatgga atcttgcttt cataactctg
      241 ataagagcac aacaaacgcc taactataaa tatatgttac aacgttcatt tacagcagtt
      301 actataatgc tcaacaagcc tgatgttttc ttttgagtag catatggaaa ctgtagagta
      361 ttgaaagagt taatatgttt agaattccgt ttccatcata cttgagtgac tatctcttta
      421 aataatttaa atcctctcca tcaactacaa agctgttttg aagccattta gctttgttct
      481 ttacatgtgt tctaattaag aaatgacctt gtcatcacac agaccagaaa tcctggatta
      541 tttcctgcag caaaaatcta cgaagccaaa aaaaa
//
LOCUS       KCLA01000455             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7400upu ultra-conserved element locus uce-3451,
            sequence.
ACCESSION   KCLA01000455
VERSION     KCLA01000455.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-3451"
BASE COUNT          298 a          166 c          210 g          235 t
ORIGIN      
        1 ctttctcctc agtacatgca taaagaaata aaagatgcca gtttgtggct tagctgcatt
       61 caggaaaact tccgtattgc tgccaagaac tgccatctgc cacctacaag cgcaggtgcc
      121 agggagtctc ctctgcacac aaagcataat aatataacac aaaggaccaa tgtgcactaa
      181 taattgctaa acacacagaa agaggggcca gaacattttt atgaaagttt acttagtctg
      241 aggagatttg catacagatg gctaggtcag ggtgctgtgt atgccgcctg ggccgctgtg
      301 gggtagggct gccttcaagc agcctttata agcacacacg gcttttacta tagcatagtg
      361 ttgtggagag acctcattct gcacacactg aatagtcatt caagtagctt gctttgaaat
      421 gagaaaagac cttggatggg ggggaaaaaa agcaaattct tttctttgtg agacagagga
      481 ggagtgttgg gaaagaggcc agaggactta aagaatgtgg gttagcaacc aggaattaga
      541 ggaaagtttc tgtggagaca cacaattaga tatgtggcat tcacccctct ccttctagtg
      601 ggcaacaaga gcaagcacat ttcaaagggt tcatcatctg catgaaacaa ggataggggg
      661 aagaaaaagc atcctaattt ttaaagtata aagaaaagtg taactgtctt aaaacaaacc
      721 caaaggttaa gcagcaagaa atttcccttc cactaagagc atgaagacac aaatcctgaa
      781 tttagtgcgt tttcttcatg tgtatatgga tctgaaattg tacatatgtc agtgcagata
      841 cacgagtagg tgccttctaa tatattgaga tactttaagt ttgaaaacat tgataaaaga
      901 gtttgtaat
//
LOCUS       KCLA01000456             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7416upu ultra-conserved element locus uce-4897,
            sequence.
ACCESSION   KCLA01000456
VERSION     KCLA01000456.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4897"
BASE COUNT          197 a          135 c          129 g          148 t
ORIGIN      
        1 gggggggaat ccatcctttg caaagcaaag cagaagctat atttgtaaat gttaacaaaa
       61 gctaaacatg gggttttgct atggtaagaa aatgccaccc tccccttctc cataaattgg
      121 gcttctagga agcaatccct cccccaagaa acggcttgtg gggagggcaa agcaaccagc
      181 tgggttgtag gagtaataaa gaaggagaat caatagggca tgcaatggag ccaaggtgct
      241 gccatttatc acgccgcttc tctgactcca atcattcatc atgctcaatg aggcagcaaa
      301 taggaaaatg actatttgta tcaaacacat ctgcactcat ccactgaggt attttattcc
      361 cattaactct gaaagtaaaa tacgcagagt tttctagctt ctttcggctc aggttggcag
      421 aagaaattca cagcacacac gaacagaaat gactgcagga gtttgcaaag ccttttggaa
      481 aggattttag tgactccaca gtgagattat acacaggtac atatagctac acctgcagag
      541 tacacataca ggcatgtaca acacatttcc cgttccagat tattaggacc ataacacagc
      601 agtctaaac
//
LOCUS       KCLA01000457            1018 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7431upu ultra-conserved element locus uce-6277,
            sequence.
ACCESSION   KCLA01000457
VERSION     KCLA01000457.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7431upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1018
                     /note="ultra-conserved element locus uce-6277"
BASE COUNT          357 a          191 c          165 g          305 t
ORIGIN      
        1 gacatacagg aatttcataa ctgagtcatg gaaatgatca aacaaaaatt ttaaggaact
       61 cttgaggaac catgaaatga ttgtacatcc acttttctca tctataaact catttctgtt
      121 attacaaagt gttgtctgcc ttttctgatg atggataaca aacacatcat ttgcctcaaa
      181 ggcaaagcag aaattaaaaa tgcattaatt catgcaaatc aagacctggg atacagccct
      241 tttgttttat taagaaagtt taaacaagat gaaatttact atgaaacaca atcctgaaac
      301 tcctagggtc cactacaacg cttggacaaa aatcaaatac atttcatcca aagtatggca
      361 ccagcttcta tcaaaaaatt atatgttcag tcacaaatgg ttattgtaaa atctttatta
      421 acctaagtgc atataaaaat tgtgaattct taatacaaag cagtatttga cttttaaatt
      481 tcattttaag cttgccctgt tcacttggaa tgtgattaca gagtaaatta aaaagtaatc
      541 acatgtgaat tacatttcct catgaatgta atgacttcag tagactgatt aatgttaagc
      601 agtgcctgtc ctacctcatg cataccttcc caggtgagat gtacaagata gctgtcgtga
      661 gttgatttaa tttcctttct ctggtagtcc agtgagaaat gccgaacaga aaccaattca
      721 gtgcgctcat tagatctgta tatgttcgct tcttttgtcc atccaagcac catctgcaaa
      781 atgctatcag tgtcagctta tgattgtgag caaaacccaa gagacctagc tcatcctgta
      841 cactgtatcc tagccggaaa aactcttcac atttagatag aagaactcgg tgcatagagc
      901 aagagataca tatttgtcag cacatcagag gctgatgaaa aagagtatct tgtcaataaa
      961 ctaggaaata ggcctgtcta ggaaaataca cacaaatata tatacaccta ttagaaaa
//
LOCUS       KCLA01000458             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7446upu ultra-conserved element locus uce-2513,
            sequence.
ACCESSION   KCLA01000458
VERSION     KCLA01000458.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7446upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-2513"
BASE COUNT           81 a           59 c           57 g          103 t
ORIGIN      
        1 cctgctgctc taattttttt ttcagtgcca gtacatgtat ttgttattct ttttaactcc
       61 ctttgaagtt gggaatccaa ggggaatcta aaaccgacca gatgtttctg ctgttggaga
      121 cgcagaagac agcaaggatt aagtttaccc aaaacttagc tctctacaaa acctatttca
      181 gatggatttt ttcctcagat agttttattt attatttaca gttgcacttg ccaccctggg
      241 taggtgatac ctcgtgtcgt cttgcccagg agaaaaatgg atgatttatc caagtaaata
//
LOCUS       KCLA01000459             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7461upu ultra-conserved element locus uce-3606,
            sequence.
ACCESSION   KCLA01000459
VERSION     KCLA01000459.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7461upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-3606"
BASE COUNT          157 a           56 c           70 g          143 t
ORIGIN      
        1 catattcttc atataatcag gaatgatcag gaaatgtaga actaaatata gagaaaagag
       61 aaagttggtg aatatatttg catatgcaaa ttagcttaat tgatactgct tgcctctaca
      121 gggatttttc attacaaact ggagtgctac attgttcagc tcatattgag taatttagta
      181 actaatgaga ccagtttgca ctaatttgca tatgataaat gagcttaatt gcagtaaata
      241 acttggaggc ataattactt aattttcctg tgttgcatgg cttttaagtt cacgtatgaa
      301 caactcaaga taattttgca tatttaaatt agtagctttt aaaattcttg aacaaaaaag
      361 agcacacctt accatttgaa ctgtaaaaca attaaaagta aaatgtaggg tgttttcaaa
      421 taaaat
//
LOCUS       KCLA01000460            1249 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7477upu ultra-conserved element locus uce-6953,
            sequence.
ACCESSION   KCLA01000460
VERSION     KCLA01000460.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1249)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1249)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1249
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1249
                     /note="ultra-conserved element locus uce-6953"
BASE COUNT          244 a          330 c          347 g          328 t
ORIGIN      
        1 ggatggagat gtgcatggat gaggtcttct ctttggagga gacttgactt ggtttaaagc
       61 actggagctg tggtcaggac agcttcccac atggtgtgcc tgccttgcag ggtcaaactg
      121 cagtatatgt gctggcctta aaccagtcag ctgagttctg ctctatgtcc aaagctaact
      181 gagcatttcc actctagtca gcagcatggg cagctccaga gcctgtaaac ctcagaatgg
      241 catttgcagt gtgtgcaggg ctgtacaggt ggtggagctg cattagcttc tcagcatccc
      301 acacctgttg ctgtgagctg gctggtcaca aagccaccag agtggtcact gactcctaga
      361 agactccctt gtgggctagc caggtccttg ggatgagcga taccagagac tgagaggtca
      421 ggggccagca ggaaggtggg gagggagctg cacttcccta tgggagcacc aggttgccct
      481 ttgcctttaa tttgcccctc cacgaggacc acaaagggtg gctcaggagc tgctgcctct
      541 catgtgccgc tctctgcctt tctcactctg tgtctcttcc tgttccatct cttctccttg
      601 tttttccaga aaagaaagtc cagttccagc gttcagttaa tggtgagtgt ccttcgtctt
      661 cctcaatgcc gatgttgctg ggcctctcca catgttccag cttcccccat ttttggaagt
      721 tacctcgggg tagggaagaa gggacagtgg ggttggaggg aacatcctca aagccgtatc
      781 acccacaaat cccattaaca gggttggtgc aggcgctagc tggccaccag ctgatgggaa
      841 gccagccctg gttcttgctg atgggttctc atgccgtttc tcccagttct cctgactcag
      901 gtctgcaggc tgcatcggtc cagggagcct tggagaaaca ccttccatgc ctctgcgggg
      961 actgtatggt catgggacac cttgccaact ccatcggggt attatgggta atacatgagc
     1021 aaggctctgc tgggaagagc tagcaaagcc attgctctag ctccgctagc agagtcgcct
     1081 tgatggggct cctgcagaga gatggggggt cagtacccct ctccccccca aatctgtgta
     1141 gcgctcagct gtttctcgaa agagctgtgt ctcagccttt ggtggtccat gtgggtcttg
     1201 gaagcacttt gttttattgt acatttctct ccctactctg cggtcactg
//
LOCUS       KCLA01000461             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7493upu ultra-conserved element locus uce-4823,
            sequence.
ACCESSION   KCLA01000461
VERSION     KCLA01000461.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-4823"
BASE COUNT          208 a          102 c          129 g          234 t
ORIGIN      
        1 tgtttgcttt gaaaggcagt taactgtttc tcatgcaaac acactagcac tgtatgtaaa
       61 tttgatttcc agtttgctta ccttggttaa atcaaaggga ggaggacaga tcgagtcatg
      121 ttgctctaca actgctagtt tattaagcta taatgccata agttgttgaa acaaaattgt
      181 gctcactttt gtgagtttat ctgatgtcat atagctccaa aaacactggt gttagttttc
      241 attgtatggc ttaattggtt tgatacagca ttgcgacaca agtatagtgc ttgttatgta
      301 ggtcttcgtg ttgtttcaaa gtctttatta ttatgacagc aaagtcttgt tcattaaagt
      361 ttcacaatcc attttcatta ggatgaaact gattctgtaa atgaacagtt gctctgaaaa
      421 atcaaaccct tgcagctatc acaggggagg tacaaagtct gtattaatta tcaggaatat
      481 ggtgtcgatc gaagatgtta attgccctga tggttagtta tttggggaat tgccatgcat
      541 ttcatgcagg gataataaaa atgaattttt aaacaaagag atcttaaaat aatatataat
      601 ctgtagagaa taccaacatc aaagccttct ctcaaagctt tgaattttat ctttgtggtc
      661 caaaatgtta aag
//
LOCUS       KCLA01000462             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7507upu ultra-conserved element locus uce-4524,
            sequence.
ACCESSION   KCLA01000462
VERSION     KCLA01000462.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7507upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-4524"
BASE COUNT          163 a          148 c          209 g          200 t
ORIGIN      
        1 ggtgactacg actctgtaga aactgaaagg cggaggggaa aaggagtgct gcagcttgta
       61 taagaaatga acctctgccc actcacgttt tgtctgtgaa taaggtaagg ttttgtgcca
      121 gggagggttg aaagcaggaa ggtatgtggg tcttttctct gtgtcgcttc tcaagagtcg
      181 attgcgggtt ttttcttttc gagccggcct gaggttgtga gataaagcag ctcaggaaaa
      241 aaaagtgttc tcaagcagat gcctttaaga gacagaaatc atgaatttct tgaattgcaa
      301 ccactctggg ggtggctaca atgacttttt gacagtgaca gtaactctgc cttgtctttt
      361 cgagcccttc tttggcccat tcactctgga aagctgctta agcgcactta agcgcattag
      421 catttggatg ctcggggacc gtattgaccc tcatttggaa agtttaaatg agtgaaagat
      481 ggagcgattt gttagggctt tagaaaccgg ctttagagag cggcgggttt tccgctttgg
      541 tttgttcggg tgcttgttct aatctggtgg cggtttaaag gcgaccagac tgatttgtga
      601 cacatgagcc cagagcgcta tttctgcggg cttgacccga ttagctaatc tgtgctcgga
      661 atttcaatgg ccgcggccgg gctggccccg agcatccccc cgcgggcgca gatggcggag
//
LOCUS       KCLA01000463             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7523upu ultra-conserved element locus uce-528,
            sequence.
ACCESSION   KCLA01000463
VERSION     KCLA01000463.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7523upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-528"
BASE COUNT          123 a           61 c           72 g          158 t
ORIGIN      
        1 actgcctaat ataaatcata tatatggtaa taattttttc tcttttgtag tctgcacaag
       61 atccatgaaa gattgtattt ttattactat ttaaacagtg attaaattta gcctgagcag
      121 tgagcgaggg ttcacatgca ttcttttata ctgctggatt ttgttgtgca tcatttaaaa
      181 cattttgtat gtttcttctt atctgtgtat acagtatgtt cttaaataat gttcaattgt
      241 caggagaact gtgagaaata aactatgtgg atacagtctg tttatatata gaatgcttgc
      301 tgtgacttcc tttctgtgta gttctgattt tttaatcaag atagaaagca ttaagaggac
      361 attttaatgc atcatacaaa tactcactat gcagacctgt gagatgccca gcgc
//
LOCUS       KCLA01000464             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7539upu ultra-conserved element locus uce-1200,
            sequence.
ACCESSION   KCLA01000464
VERSION     KCLA01000464.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7539upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-1200"
BASE COUNT          271 a          187 c          181 g          273 t
ORIGIN      
        1 tcatctgcct aaatgtttta gggaggacat ttgtgggcag agggtgtaag gaaactttag
       61 tgtgcattag ttttattctc cttttaaaat taaaatcccc tctcatagtt gtatcaaaag
      121 gcttcctcat tagcgaatat ccatgtaaat tatatctcaa gaggaagaat aactgaatga
      181 aatgcataaa ggaagggctg atattccaca ctttcattaa actctgattt ttagcactgc
      241 ctgaatactg catgatcttc aacaacagtg accaacattt tttaaagagt tttaggcgag
      301 gcaggcaata ccttgcctga caattttgat gcctttcatc tgtatcaggt taaaagtgtt
      361 tttactgtat ccctctagat gtagttctga agaaacattt ctcctgccaa aatacacaca
      421 cagtctggga ttaaaagggc tgaaacctac caccaagttc ttaacgccct cccaccatca
      481 ttagactaaa tccgccgtca ttccagattc atttttccct tattcatctg tccaactaat
      541 tcctgctgca ttcactaggc ttacatctta atcttttctg ttacatagag aatacataat
      601 gaaaagctgc attttctggg tacatgcaca catttggagc ggatgaacca tatgtgaagt
      661 gacatacaat actgaatgga ggctgaatgg tgtccagtgc taaaaacagt gcaagtccag
      721 gaacaaaaag caggagaaca agagccctgt gctgggcttg cttcgctcga acaccagggg
      781 attcgacgct aaaacatggg tataatttca ctgttttcac tcacacaagc tgtgggaaag
      841 gagtcaccat ctgatgtttg attgtgctgg atatgttttt ggcagtggcc ttgtagtccg
      901 cattgaggaa aa
//
LOCUS       KCLA01000465             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7555upu ultra-conserved element locus uce-3082,
            sequence.
ACCESSION   KCLA01000465
VERSION     KCLA01000465.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-3082"
BASE COUNT          232 a          165 c          154 g          223 t
ORIGIN      
        1 aacactgtga cgtatcttgc taacatttga tctcaccagc tgctctgatt tttttattta
       61 tgtttgttta ttgctggttt ttgcttttcc atttatttat ttgttggctg caagtccaaa
      121 tgctaatgcc caaagccact gtttgctgca caatggcacc aggacatcgg gtgctttcca
      181 ccaagttgta ttttaatgga tgctgccagc tgcagcaaca ccagagcgca ttgatgctgg
      241 gtgcacacct gagaagaata aaaagaaaaa agctttttgc aacagaataa atcccttttt
      301 ctttcaaacc cctggcaata cacaagcagg ctggagcctt taggacagtt cagaaccagc
      361 ctgccatggg aaagaaatta agcagggctg cctcctcccc gcacgcgcct tttagcctgt
      421 cgacacgctg cctgtccgta tccctcacag cgcatctgta gagccattaa attggataat
      481 ccctctggcc tttgatacat ttctggacat gattatttca ttacttgcag tatatcagta
      541 ggatcataat aaaaaggact tctgacaacc tgccaagagt tttgtggcct tgtaaacaca
      601 aaagtgctct aataaaattt tattaagtgt taaaaagtca taaaaagtga aataacataa
      661 actacaaaat ttactgtcct cagcaaacgc tgaaaatatt ggccatagta aaattaaatt
      721 agcatgtaat aggcagtgcg gcagtggagt ggagttaaaa gaggatccgg gaaa
//
LOCUS       KCLA01000466             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7571upu ultra-conserved element locus uce-2637,
            sequence.
ACCESSION   KCLA01000466
VERSION     KCLA01000466.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7571upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-2637"
BASE COUNT          222 a           98 c           98 g          206 t
ORIGIN      
        1 agaagcatgt agctactgtt ttccccacat tggaaagtct gtggtttctt tagcatatac
       61 aatttttaat acagaggatt agctttaaca atctaaatcc acctatgaat gaagaagtgc
      121 tcaggaagcc aactgagttt tgaatagcat tgagtagatc agcatgaaaa ctcgcttatt
      181 cactttagca cacgcttcac agtatatata ctgtactata ctgaaaaatt tataactaca
      241 attgaaaaga agaatcaaaa gcaactgcaa agatagtgta caactatgtt atgcatagaa
      301 cattgctttt tctaagggga agcatttgag catctcagtt tatacaaaaa gcaggacgta
      361 actacatagt tgtcagtgca tcctggtgaa ggcatcaaac cctcagcttt ttttaaaaat
      421 ttaattataa gctagatgct aatcagaaaa tattctgtat ttttcttaaa tttcttcaat
      481 acatggtaaa gacttttcct atttccccaa atagtgattt aagcatcata caaagttaaa
      541 tttcaatagc atacatatat ttatggggtt tgtatgaaaa atgtaaggaa aattgttcaa
      601 aatctatgat tatactagtt tttt
//
LOCUS       KCLA01000467             834 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7587upu ultra-conserved element locus uce-81,
            sequence.
ACCESSION   KCLA01000467
VERSION     KCLA01000467.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7587upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>834
                     /note="ultra-conserved element locus uce-81"
BASE COUNT          261 a          199 c          195 g          179 t
ORIGIN      
        1 aaatatccct tggcccctcc cagccccaca ggactttgag gcccagtgca atccttggaa
       61 ggcaaatgca atagggtaca gctctacaga gatgatccca cttcttgtgc ccagtaggca
      121 agaaggtctg ctgcagtcat gctagctcct cactgctctc tgcaaagcgc cagcaggaga
      181 caataatgca tggctgcggc tctgagccat cctccaagga aggatcctac ctccacacaa
      241 ggctgtccaa gaacttgaca ggactctttt tgaaaaagat gttgaaagaa atgatctctt
      301 taagtgtgat gggagatatt tgtctctgat ttacccttgg ctttttgctc tggttcaggt
      361 aggagcggtg tgggatggct ggcagatctg agagcatggc acgccccagc gggcaaagtg
      421 agcagtgccg aggaaggcga gagtcagttt ggagtgctcc ccatttatca aactcacgca
      481 gcccgccagc agagcgagtc tttctatcat tacagctctc aaaatccgat tcataccact
      541 aatcctgcct tcattctccc agattaataa catctctttc aaccttcaca gtgtgataaa
      601 tagacaaaga gagaacaaaa ggagaaacag aagtgagaga aagagccaga gcaactccac
      661 ataataaaga gaaccaagaa aggggaaagg aaaaaaaaag gaaaagaaaa aggaaagaaa
      721 ggagcaggca cacttgactc ttttacttta gcagattctc cccaagagct cacagcgatc
      781 tttaaagaat gtaaaacact gctcgaagga aaggctcgtt agcaaccctg atca
//
LOCUS       KCLA01000468            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7602upu ultra-conserved element locus uce-1190,
            sequence.
ACCESSION   KCLA01000468
VERSION     KCLA01000468.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7602upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-1190"
BASE COUNT          330 a          200 c          191 g          294 t
ORIGIN      
        1 ttctcttaaa tcgacacttt agttctggtg gtttttagct actgtaacag gggtatacgg
       61 gcaagtagga aagtacttgt gtaaaagtcc atagccaaaa attgtcagtc cgtactgttt
      121 tttttgtgac aattccttat acaaatgaaa actctatgct cattaaggaa aaaaaaataa
      181 aacaaacaga aaacaaaagc agaaagcaaa tcaagaaaca gaatcaaaga catcagcttg
      241 caaacttagg taatttagaa ttctagagac aatccaatgg ctactttaat taacacatcc
      301 tctctgcaat cagctgaagg cgtacacaaa tatatacttt tacacggcca acataaaaga
      361 gataatagaa tctgaaagat aaatagagtt taatacctta gtaatttgta cttagaaaca
      421 aaggccttgg tgcagtcttg ttgtgtgcac ttgtagggcc tctctcctgt gtgagagtat
      481 gagtgaacct ttaatttctc aacactgtta aaggccttgt cacacagttg gcaaggaaag
      541 ttttttcttg gtttggtttc accacgctta cgtttccctg aagggacttt ctgggtatct
      601 cttacttctg acaaatcacc aggaatgaca gtggccatcg cagcctaaac caggccttct
      661 tgttggacac ttgggaattg cccaactcca ctaaatgatt tagctttaga tggcttctca
      721 agtttcatgt ggtcgtaaaa gaaagcaaaa ggggactgga aaaaaaaaat aagaaacaac
      781 tagtttgtaa ctaaactcag attgtgaact ttacttgcta tgtgatgctt ctgaacaaaa
      841 cttaaaattt aggttcagct ggtctgctgt aatacctgca ggtttcttta cacgatttgc
      901 tgcgactctt aaaatgcatt gctcaggatg aacagatcca caaacgccct cagatcacac
      961 ctcaacacct tccccttgag ccctgaggga caacagtttc tgtttgctta tgaaa
//
LOCUS       KCLA01000469             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7617upu ultra-conserved element locus uce-1288,
            sequence.
ACCESSION   KCLA01000469
VERSION     KCLA01000469.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7617upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-1288"
BASE COUNT          197 a          129 c          120 g          212 t
ORIGIN      
        1 ctcttgtttg tgtgtgccag cttcaaagag aattgcaaga ggactgaggt agctagaatc
       61 actcagataa gcttttgttc agcattcacc aggagcttta aaagaaattc tcctagcttt
      121 aaaacatagc agacacaaac acacaaaaga tggtatcatt ctgctagtgc atcttcctta
      181 acttctgatt tatcttttaa aacatttctt tttattagca tccatatcct tcagaggagc
      241 agaagaaaca gttagcccaa gacacaggac ttacaattct acaagtaaac aactggtaag
      301 tgaccctaca atcaatatct ttactcccat ggctaaactg caatatctaa ataattgttt
      361 tctttttcat ttctgaacca aatgccattg acaaggaaaa ttcctgtgtt cattcttttt
      421 aggtatgaaa gtagcactta gggaatggta aagccaacct gggtaaattg tttttcaaga
      481 tcattctctt tccgcgtgca aagtgtccat ccgagccttg gattctgttc aggtctttcc
      541 cattgaaagc acctgaaaag tcacatagtt ctgcacagtc tgagcattta ggttatcagt
      601 gcagtaatgg ctggctttgt ttaggttttg agtggtgatt tagatacagg cattttaa
//
LOCUS       KCLA01000470             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7632upu ultra-conserved element locus uce-7823,
            sequence.
ACCESSION   KCLA01000470
VERSION     KCLA01000470.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7632upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-7823"
BASE COUNT          260 a          166 c          142 g          241 t
ORIGIN      
        1 tatcactgta attattaatc ctttcatttc tctttgcacc ttcatccaga tgaagccaag
       61 tgtctgcatt cttggtaact cttacttctc agtgcaagat ggtcagggca tcacctccca
      121 tcagagtaaa actcctctcc ttcgtatcaa agattcatca tccagctgag ctagaatccc
      181 tctttgctct gaaactgtgg gctcctgggt aacagtcaaa tttgcaaagc cccatctcca
      241 ggtcaccctg ccagttatta aatattttag ccagcaagaa gcattaagaa ggcctagaga
      301 ctaggaacac aattgaaaaa cctctaagaa aggaaatatc ttattaattc attaagtcaa
      361 actgcttgta tctacacttg tatgactaga attatggttc attaacttca tttctttata
      421 tgagttaatt agctcagagg aggccagaaa ttaattacca gcttatatag tttgtgcaga
      481 atggcattct gtttatttag tttctcctat taacttttaa tctcttcaaa caataaaaga
      541 ggtaattagt attttataaa caaaaatgaa tgcaacaaag gcaaataatt tgccaaatag
      601 tgaggctcct gagtggaacc tgatagttgt gtggttcaag ttacagacct tttcactgtt
      661 aagtagaagc aaaaggagat tgaaaaccta ggtaggctta aggcagggcc aagcaatcca
      721 tcatgaaaga agagctacct cctaatacct cgtggagcag agaaaccacc cttaaaaact
      781 tcccagctgt ttgaaaatga ttgcccatg
//
LOCUS       KCLA01000471            1045 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7648upu ultra-conserved element locus uce-6568,
            sequence.
ACCESSION   KCLA01000471
VERSION     KCLA01000471.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7648upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1045
                     /note="ultra-conserved element locus uce-6568"
BASE COUNT          278 a          217 c          258 g          292 t
ORIGIN      
        1 catataaaaa ctagctgcaa cacactaagg gaaacattgg ccaaagctct ctggacatgg
       61 attaatgatg ttatttgatg tccttctatt tatcaacacg aactaaccag agggattgaa
      121 gtgaaggttg tttttttggg gggttggggg cttttttagt gaaacactct tgtttaatcc
      181 cacgtaacca gggtggccag agcagatgtg caggcacaac ctgaagtaaa gtgatgctga
      241 tgcaccccga taggggaaag aatgtgggca atgtcacgtg ctcgactact tgggaaaact
      301 gtggtcagtt ttcattatcg ctcagatcag agcactgagc ctgtaagaaa acataacaat
      361 tgggtgaagc cttttgatga caatagcatt ccctttttgc caagaaactg tggaaatgct
      421 ctgtgcgtct tcccagcacc cggagtcatc cacccccatc ttataattca acctgcaaac
      481 agattaagca gctgagtttg tggaaagtgt gtttactctg agctaagaac ccttgtgtga
      541 cactatagag attcctctga cacctctggg agagctacac agacagttcc tactcatcag
      601 cagggaaacc gggctgagaa ttcccgattt ctttgtaacc ccaaccgctt catacaaatc
      661 cgtgtttggc aattaggcag cagcgcggtt gttagctcag cggtttattc tgtaggacgt
      721 tctacatctc caaaaggaac tgccgattta taaacctgtc agggggaagg cttcttgctg
      781 ttaattacgg gagtattaat tattagcgct gtcttgagag gatgcttgtt gtaatttaaa
      841 gcgtgacgct gcgatttgtg gcgtgaatcg ggtgctgaag catctgtttt ctcggctcct
      901 tttcagtgct caagtaaaac tgaactctga ggcgtgaggg gagtattttt agcagctgtg
      961 taaggtggtt tctctgcatt attcagcaaa acatctgact aacgtggcac ccgttacaaa
     1021 tcagaggcgg gaagtgatta cgagc
//
LOCUS       KCLA01000472            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7663upu ultra-conserved element locus uce-6209,
            sequence.
ACCESSION   KCLA01000472
VERSION     KCLA01000472.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7663upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-6209"
BASE COUNT          267 a          249 c          225 g          269 t
ORIGIN      
        1 tctgctccca gacagcactg tccaagtgct agagtgagaa gcatctcatc ttaaacccac
       61 agagctggca aaatctcctt cagaaatcac agaatttctt ccatgaggtg cctaatatga
      121 ggaaatgaag cccagtcaaa cttttgtttc acttggaaag tagcatgtga aacagaaacc
      181 cctacacaaa caacaagcag agccttcttg acccagctga cttcactagt tggtgccttg
      241 ttttcttccc tttccttagc tgtcactgca gctcactcgc tgtaagccac tcagtctcat
      301 taaaagcaac gtggtgaaac tagccacatc attatcctca cttagatgca gttcttgtag
      361 ccagcacttg ccgttcataa caactgccac ttaggatttg tgagcccccc gtcggcacct
      421 tcctgctggt ttgctgggtt gggtcttaac tttgaaattt ccacgtcttc agaacaacta
      481 aaattcacta gaacaaacta attaatggat tccagttttg acagctacaa gaagacagat
      541 gagaaagtaa catgcttctg gcagcgtgtt atcaattggg aggcaccagt gcatcgcctc
      601 tgtgtggtac agtgagctgg aaccgacact gacagatgac acagcccttg acagtgaagc
      661 ctgtacgagc tgacagctcc acttgcactc aggcaggtcc atgcctggca ctggaactaa
      721 agcagcctga tgtgcagaat atgcttgctt tgatccccca tatccatact gtggacaggc
      781 tgagcagctc tctcaggtgg atcccacgac ctactatacg aagtcacaac tgtgacaagt
      841 gctgagattt cactggtaaa agcaaactaa acccattaac aagtattgtt atcttccaga
      901 cagtattttg ctctgctttt gggaagaggg atggctgtct ggacagtggt gtgaggtgag
      961 cctggttttt gatggatcac tgggtcctct ggttgggttc tcaagtgtgt
//
LOCUS       KCLA01000473             445 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7678upu ultra-conserved element locus uce-5948,
            sequence.
ACCESSION   KCLA01000473
VERSION     KCLA01000473.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 445)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..445
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7678upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>445
                     /note="ultra-conserved element locus uce-5948"
BASE COUNT          133 a           68 c          116 g          128 t
ORIGIN      
        1 tttttttgaa tttggacaga cttaaagaag tggcatcaaa tttgaagggc acccaatcaa
       61 tctgttgtcc tagctgcatg aaattgtatt tccctgccac ttcatatctt atttgcagca
      121 gctgggctgt aagtcattgg tgataacatt ctttattatg cagccgtgtt tatgaactgt
      181 gcctggaaag agatgataga aatatgcagc aatatgcaaa gggggggata ctggggggag
      241 ggggaataaa tgctagttgc cagggcaacc agggggctat tttgggcatc aaattttgca
      301 gatgatgaaa agcattttca tgcgatggtt ggtctctctg ggaagagaag gggagagagg
      361 gcacacaata aactgggaag ataatattca agaaggcagt catttaattt tttcctatat
      421 aaacacagag atagtttcag ctgta
//
LOCUS       KCLA01000474             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7694upu ultra-conserved element locus uce-3902,
            sequence.
ACCESSION   KCLA01000474
VERSION     KCLA01000474.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7694upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-3902"
BASE COUNT          254 a          178 c          171 g          232 t
ORIGIN      
        1 tctaggaatc tatgaatctt ttctcaaggc agataaaccc agtttgcatc atttccaggg
       61 gacagaaaca gatcagaaaa tcccaattcg gagaagcatc ttcttccctt gcctcccatt
      121 gtcacaaaac catcgcacac cgtatccttc catcccagat cttacagcca acaagctttt
      181 gctgactaca taaccttcag taacctgaaa ttcctgagta ctcccaggag ctcaatgcat
      241 cttggaataa aattttggta atgtcattta agggtattcc taatccagaa ttattgagga
      301 ggcctgggtc atgggaattg agtttgacac ttgacaaata cttggctttg tgtaaatgga
      361 caggccactg aaataactgc ctttggatgt cacatgaaga gaaattaatt ctttattaac
      421 ttccgcaatg ataatctaat aaactcattt ggtctactag tttcagcact taaagcgctc
      481 agtcgattgg atgcaaatag gtttttccct cccctctgga acggtgcctc tgtggtgggc
      541 aaagcgacgg cggcgtgaac aggcagggct ggtgtgttag aatctggtgt ccaggtcctg
      601 ctgctcctta gggtgagaga gacaggcatg gcagaaaggc aaacagcagg gcttaaaaaa
      661 tactgtgtta ggaatgaaaa gagatggtta ttaaaaactc ctgttatgaa caaataatct
      721 cttttcttct taaccaggta ttttaataca atgaacaagg aaacaataga ttagctgttt
      781 cctcttcata tgacagcaca agacatgaga cccagccata acagcaattt tacat
//
LOCUS       KCLA01000475             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7710upu ultra-conserved element locus uce-7292,
            sequence.
ACCESSION   KCLA01000475
VERSION     KCLA01000475.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7292"
BASE COUNT          225 a          137 c          110 g          202 t
ORIGIN      
        1 aagttagtga gaaaatttga attttctaag cagtaagcca acctgagtgc aatcgatatt
       61 ctattttctg aaagcttcta aatcctcctc agtcccccaa ttactacagt agttaaccta
      121 atgaaatttt attctatggg aacaatgcta ttgcaacaag tttttagaaa atgaagatta
      181 aaaacttcca gacaaagact aaactcccag aaaaaagatg caaataaaat ttctatcatc
      241 gccttttgtt ttttatttgc aagtataaaa ccaaagagaa acaaaagcat gggacgcagc
      301 atctgtcata tcggaatata aaaagatgat cctggcacca aatgaaaaag ctctaattca
      361 tttgcaaatc aagcctgcca gttctatttc aagctggcgg taactgtcaa gagttaacaa
      421 gataatcact ttcaatcctg ccttcaatgg tacattacac tgttattcca ttcaataagg
      481 cccttctttg gggcactgga tgaatgggtt tcatttctaa ctcacacaaa aagttgcaaa
      541 ataaatccgt ggggcttaag gaaaaaatcc ctttatgggc acttatttgc cggctcttgc
      601 ttttaggcaa aatgagctct ttggatacat tgatgtccat tcacttctac tccttcaggc
      661 cctcagactc ttga
//
LOCUS       KCLA01000476             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7726upu ultra-conserved element locus uce-1579,
            sequence.
ACCESSION   KCLA01000476
VERSION     KCLA01000476.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-1579"
BASE COUNT          186 a          128 c          167 g          284 t
ORIGIN      
        1 aaaaacgaga gcctggtggc tgttcttggc tggtagggtt tttttgtaag ttcatgccag
       61 cattaacaga tctgtcagaa caaagcaaat gtgtcatatt ggcagctgtt acttatgagt
      121 actttttctt tgttgcattt tgttttgtaa taattgagaa gcttttatgt ggagctctgc
      181 ataaatggta ctgagtggga gggtatgggc atgctttcca ttattctgcc cctcatgcat
      241 gtctcctttt ttcgtctttc cagaaccaca cattgagcca gcacgcacag tgagccactg
      301 gcgctacagg acacctctct gcagaagact tgacggtggc acagtgggga ggaccatttg
      361 aacattacat ccaatcaaag tgtcatttgc aacccagatg taaaactcta atgatttggc
      421 catgaggcgc tgctattata agcagctgga aatgaatatt aatggaagag attaaaagta
      481 ttccatgctc agtatttttt attgtcctgc ttcagctagt gtactttaga gcttctgctt
      541 ctgactgaat ttatagtgtt agataaatct gctttgatgc tgttgccctt tgttgcttct
      601 tgtattatat tgatagttaa agattaggtg tgactttttc ttttgttgtt aactgctttt
      661 taattgcgat tttaggtaac tgtgcattgt gatgtggttg cttggctatt gtctgaatat
      721 ttctttttaa ttttttaatt aaagactaat gctttgattg gattt
//
LOCUS       KCLA01000477             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7742upu ultra-conserved element locus uce-5190,
            sequence.
ACCESSION   KCLA01000477
VERSION     KCLA01000477.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7742upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-5190"
BASE COUNT          242 a          191 c          185 g          285 t
ORIGIN      
        1 caattttata ttttctaata tacagaagtt tttctccctt ccaaaagatt tattttcatt
       61 aagttatgaa ggcagaatgt ttggcagttt ttttgcatta gctgagctgg tttatcttaa
      121 gcagacgcag tagtcttgcc tcagtttttc tccagctatt gttctttttt acaccgcgtt
      181 tgcacactgc agtgcatcta gggaatttca gcagtcggaa tatacatgaa aagagacccg
      241 ctctactttc ataaggtccc tggatgaatt ggacgaaacc tcaaggcccc atggtggagc
      301 cagagccaca ttcatattcc ttgccatcac cacacatatg atagcatgaa gcccagacca
      361 atcgaaaact tgacagtaag ccttttgatt ttgcggggaa gccttcatca agctgagaga
      421 gggaagggaa tgtagcccaa actggacttc atactgtggc aagtttgaaa tcccagccca
      481 accacagagc tgcttgattg gaatagttgg aaactgtgtc caggaattcg gcagcaagaa
      541 cttggctttc agcagctcct gcttttttaa aggaaaattc accatgtggg tcactcagga
      601 gccttattta ttctgtcaga atgttaaata tgtacattct tgtaaagcac aggtatagca
      661 cacaccatac agcggttatt gccctactgt tctgttccac agctgcttgt gatggaatgc
      721 tcttggctaa agctgccgtt ctttgaggca tttaattatt tggtccttag tttagttaac
      781 aacaaaagaa accccccttt taagctgtat ctattagcat cagcttctcc tttaaagatt
      841 taggtatatt aggaagttgc ctcttactta tctgtgtggc tggtttagtg gtgcctcaaa
      901 att
//
LOCUS       KCLA01000478             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7756upu ultra-conserved element locus uce-6592,
            sequence.
ACCESSION   KCLA01000478
VERSION     KCLA01000478.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-6592"
BASE COUNT          129 a           67 c           75 g          126 t
ORIGIN      
        1 aatcttagaa ctttcaagtt ttccaggaag acctgtatca ttgtgtgtag aggggcatga
       61 ggaggagcat aaaacattta gtaaacaaaa cataaagcat ctttaacatg aataatcaga
      121 atggctttaa attgttttgt tgcaactata aatcactata atcagtgcaa tcactcagct
      181 ctgacatcca ttagccgctt ggttacagca aattaacaaa gaagagagaa agtgattcat
      241 tatctcattc ctgttaatga ctatcagatg cattgcttaa ttaggggatg gccattgtag
      301 tgggaagaag gtcatatgcc ttttcacata tctttttgct ctgagtttaa gttttccaca
      361 acagtgcacg tttgttaaag gtattgacac ctatcat
//
LOCUS       KCLA01000479            1042 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7772upu ultra-conserved element locus uce-5185,
            sequence.
ACCESSION   KCLA01000479
VERSION     KCLA01000479.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1042
                     /note="ultra-conserved element locus uce-5185"
BASE COUNT          320 a          220 c          204 g          298 t
ORIGIN      
        1 aacactggtt gatgttgatt ctgttccttc tcttattcca acccaatgct aaggactagt
       61 ggaagaattc aggcaccaga aagcaattgt tggtagcctt gcacccataa tatccatttt
      121 ccctaattaa agtatctgat tactttgttt cttatgaagc tttgaaaaat ctgctttaaa
      181 gtagtaagaa gaagctagag ggtacctcac aggcaatctt acctactggg atcatcacta
      241 tcctgtgtgt tccttacaag caatctaaca catttatttc cctttttatg tacaatttta
      301 tcagaaaagc caaccaaaag gtagcaaagc acaaagttag ctagcagcta agagtccttg
      361 ctgccaaaag ccataatctg acacagattg agcccggtac agtagtcaat taatggctca
      421 gtgctcatac aataatgacc tactaacctg acggtgtgtt gctctcacat tttgcagtcc
      481 cctgggatgc cactgtcact gtgttatcta ttgcctgctt ccctatcaaa gaaaataagc
      541 agagctgaaa tgtatgtacg catcaggctc tgtagttcat tgcacaccaa ccccagcaac
      601 tggaggaaca atagatttat aagtttatcc tacattaaac caaacacgcc tgactgcact
      661 gtaaattact aaataataaa ccaggtggtg taagatcctg acttggacag aatataaaaa
      721 tctatcaacc tgtaaaatac aataaccata aatgtgctac ggggctgatg gctcaggtaa
      781 accatccacc tccagcaaca gaggggtttc tggagtgaat tgcaacaaaa ggtttactaa
      841 atttagggct ggggcacttt ttcatttcct gcaacatcgt caataggaga aaaataagaa
      901 ccggtggcga atgtgtgggg tttgtttaca tttctttgtc tctaatggag ctatttcatg
      961 gtaatgggtt gtgtttccct gcacattgcc acaggcattt agtctgatct ctaaagagaa
     1021 gatgaactac tgcggaaggg ca
//
LOCUS       KCLA01000480             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7788upu ultra-conserved element locus uce-7136,
            sequence.
ACCESSION   KCLA01000480
VERSION     KCLA01000480.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-7136"
BASE COUNT          176 a          141 c           79 g          182 t
ORIGIN      
        1 ccagcacagg acccagcgca tttgtcacgg tggctcctat cagagatacg ctgctctttt
       61 ttttcctcag cacacaaaag caagatatgt aattcaatgc tcaatttacc cttgtctcgt
      121 aggagatttt tccccgctaa ttgatagaaa ttaagccatt aatcaagcca ctagccatca
      181 ttcaaaccag ggaagatgaa tacaaacttt catcataacc accttcccca ttttagtgtt
      241 cattagcatt aatttttaat gcaattatgc tattctttta cgctgagctc ataaattact
      301 gctcttttgt tgctcactgg ccttgtaaaa tccaaggtaa tgctttgtgc tctgatctta
      361 aaggcaatta ctggcttctt ctatctttta tacatctcca tcccaaataa cctcgatatt
      421 gtatgtacaa actaacgagt gtatatatta cacagacgga taatatataa caatttgtct
      481 gtgttaaacc tgcactcgta tctatcagac acaccaagat aaataaaata cttctgcctc
      541 taggcacacc ccactacaac cagtatacat ccactaca
//
LOCUS       KCLA01000481             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7804upu ultra-conserved element locus uce-4688,
            sequence.
ACCESSION   KCLA01000481
VERSION     KCLA01000481.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7804upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-4688"
BASE COUNT          185 a          104 c           94 g          205 t
ORIGIN      
        1 atttttccag ctatatagtc ttcctagtag actaatagat aaataaccct cccagtaatg
       61 tcacagcatg cgaaagggtt tgaaataaaa acacctgttt taattagtat tcacatttgt
      121 gcagtctgct aatcctcttg cagttctgtg gcatttttaa agctttgaat ttccatctgt
      181 atcttatatt atgatgtttc aggattgtcg tgagttaatt atgttaactt tggaaacatt
      241 gactgcattt agaatgaaaa acttcagctt gaatagccag gaaagcagat gctatctttc
      301 ttgtcaactg ctttgttgtg cgttgccttg aaacttttta taagattctg tatccaaaag
      361 gaagtataaa tctccatcta tttgaaatgt tactctaatc taatcaatat tttaatatat
      421 ttcttgtggg aggaacctga gtgtagctca aggaaccaaa gacatgtaaa tcacttactt
      481 taagttgata tcctcctgtc atgacaagtc cattccccag actaatttga agaacaggaa
      541 acatccatgc agtataaagt ttaaaaatca ttttccccct gaaatata
//
LOCUS       KCLA01000482             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7820upu ultra-conserved element locus uce-7518,
            sequence.
ACCESSION   KCLA01000482
VERSION     KCLA01000482.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7820upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-7518"
BASE COUNT          303 a          141 c          136 g          240 t
ORIGIN      
        1 agcacacaaa tactgaaaaa ggtcataacc cagaatgcgc ttgaaaatgg aatgcagcta
       61 attattcact gtagtttagt agtttcacat ttaacctagt tagcacctta gtaaactcaa
      121 ccactgaatg tgagaaatgg agtgcatgta gtgtgacaac tcaacaggta ctgtaccatt
      181 tcagaatgag atagcgtttc ttgagcatta tgcgccgtat ttttgaaaac tggttgtatt
      241 ttagaagtct cccaaaacaa gtaaataaac aatggctaca gtaaaagtct aaacaaagaa
      301 taccctctac tttttgtaag ttgggatttt taagagcaat cgtttataag gattgcatca
      361 acatcggtta gcagaggaag atcaaacttt attgaaactg cttgcataca aaatatattg
      421 cactataacc aaacaaatgt caacataaaa tccaatctgt tgtagctaat atgtacagag
      481 aatattgccc aagagcagtt acattacaag gtcagtctac cttggttaat tatctacagt
      541 attttaaacc aaacagctta cagatgatgt gtgcaaggta ccaatttctg ttctcaaata
      601 ctatacattc ccaaaataaa taactagaaa tcaacattaa tgtttggcaa tactttttaa
      661 gacattttta tatttgttaa atcatgtgca gttcgttgcc atttttagta cgctcacctg
      721 tatgcaagga aaagacaaag aatgaaaaaa gcaaagaaat aaaactcaca aaatacatca
      781 gaggcaaggt caagtttgta cagttctgta catcaacagt
//
LOCUS       KCLA01000483            1069 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7836upu ultra-conserved element locus uce-5914,
            sequence.
ACCESSION   KCLA01000483
VERSION     KCLA01000483.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7836upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1069
                     /note="ultra-conserved element locus uce-5914"
BASE COUNT          347 a          228 c          177 g          317 t
ORIGIN      
        1 ttaaaaggca attgcaagca taaaattaga tatgttcaaa agtaaagaaa tcttttgttt
       61 aaagttgcca gaccgaaggc atgaagacac atgtccttcc cctaaaacaa tcaggatctg
      121 ttccacacct tttggtagag cagaaacccc actgaaagtc aagcaagact tgaatgtacc
      181 agtctgtatt tcagcatgaa ctgcatctaa aataatgaca gtctctctca tctttccagt
      241 cttaacaccc tttataacta cagctcagaa atatacggac agagaagaat taaagcaact
      301 gaagctgaaa tatgctactt aggaatccaa agtttgttta caccattaga aggcactcaa
      361 atatatatcc cgataaatga caaggtccca gcagcaaatt aacaggaaca attttcccat
      421 ctcaggagct gtcaagatgg gttctgttag ccaatttatc ttactctagc acatctctgg
      481 tgcttgtcaa tcaatatgtg aaacatttgg tactgattgc catttttcta tccacttcct
      541 tttgcctctt ctaccaggca atttactgca agtcaatcaa ggttgaagca gaccttgttt
      601 aaataaaaca ctgttgagtt cttttcacac caacaatttc aaaaacagaa tgagctgtag
      661 cttttcacat ttacatttat actacttttt ctgtttttcc caaatgccat gctcaagctc
      721 taagtcataa cggaactcag tcgaaggctt atggagacaa cagtcaggga agatgagcag
      781 aatataactg tgtatgcttt cgctgtcaaa aagccagtct atcaaagaac acagaggaca
      841 taaagtattg aagtaatctg ggattatttc ccttttcacc ccacttggtc aggcctctac
      901 accataacac cagtttctaa tgtgcctgaa cctcttaact cagggtattt acttcaaata
      961 tttatttaca atgcaatttt gaagtaagaa ggagatcatc tgctgtattc atagctttgt
     1021 gaagaaaatc agttccccca attgaagact tggccctgtg ttatatcac
//
LOCUS       KCLA01000484             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7852upu ultra-conserved element locus uce-7463,
            sequence.
ACCESSION   KCLA01000484
VERSION     KCLA01000484.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7852upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7463"
BASE COUNT          225 a          118 c          117 g          214 t
ORIGIN      
        1 cctgagtcta tgaatctatg aagtgaaggg cgctgaaaga ggggtattgt gtcacctagt
       61 cacttctcct tttgtgaagc cacacgtaac gcaaagttaa ttaaagcttc tactgggaga
      121 aaaaggaatg ttccatttgg taaatttaga aacagctggt tagttttatc cattactttt
      181 gtgctagcat cagtcgagct tattcaagtc tctcttttta tgaagctgtc cttcctatgc
      241 tacctgatag ctactaattg ctgcaactac atttctgaat tgcaaatttt ctgcactgat
      301 aaaaactttg attgcctgtc agctacacat aaggaaaaga tcaccagtgc taaatgaggt
      361 gttccacgct tggataataa tgcctaatga attattcaaa aaagaatgct tgaatgaagc
      421 aaacaatttg aagggttact agcagccgta acagttcaac agccaaaaga acaaaagtat
      481 catcctgaaa attacactaa tgattaaaaa atgcgtatta attctacatt tggagaaaaa
      541 agaaatgcca atctgatttt aaaggttaat cattattttt tcactagtgc tctaatctct
      601 gggaaaaaca ccctttacta atattttggg acatataata ttatgacatt acatatttat
      661 gtaattttcc aggc
//
LOCUS       KCLA01000485             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7868upu ultra-conserved element locus uce-1564,
            sequence.
ACCESSION   KCLA01000485
VERSION     KCLA01000485.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7868upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-1564"
BASE COUNT          200 a          146 c          133 g          196 t
ORIGIN      
        1 ctaattggat gctccaggtt tactactccc tccatggcta agagagttag aaaccacaga
       61 acatactgcc taaaccagaa aagacacctc tgtgtgcact gtataattta atgcatgaga
      121 taccctcggt cttccagcac agagtttttc aaacaacagc atttcagcct ctgaagcaga
      181 gcagcaaggg catcattttc catgctcagt ttctctgcga ttggaacatt tgttttttat
      241 tctgaatatt tcagcacatc tatttacctg gcactatatt tagtaccaga gtaccaagat
      301 ggcatatata aagattcaat tgcaattccc atctgatgtc ccttccctct cctttttacc
      361 ccctttttat gtccgcgctc tgaattcagc acaaagttgg tgtgtttaat ttaaaaagaa
      421 gtaaaatgcg ccaggagacg cctcagacca ctgcaaatca cctactttat agaggcagta
      481 aaattgtgta tcagattaaa agtgatgctg atctgaaatt tatgataact tttaatggca
      541 ttataatttt ttttccccct ccgctccatc acgggatcgt ttggatgcac agagcagcga
      601 gatgagattt gtaagggagg accattacat aggcaagcac caaagggagg gggggaaagg
      661 tgatggaata atgca
//
LOCUS       KCLA01000486             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7882upu ultra-conserved element locus uce-1648,
            sequence.
ACCESSION   KCLA01000486
VERSION     KCLA01000486.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7882upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-1648"
BASE COUNT          115 a           58 c           67 g          116 t
ORIGIN      
        1 agcaaattca gtttaggaga aatttgttat gaataaaacg ctgctgctgg ccttagaaca
       61 ttgaatttat ccaccaaata atatcttaga aataccactt cagaagaaat cagctctaaa
      121 taattgataa atttggtttg tttagaaacc ttttgacctc tgtaatagaa agtaaaaaca
      181 catttcagtt attaaagtca catatattcc ctctggtagg ggaagctttt aattttaagc
      241 tggtctctgt tggggccatt tgataaagct tggagaaacc ttttcaactg ctgctggtgg
      301 atttgggtca gcttccctcg ggaaaacggc aaaagataaa tttgtagctt ttcata
//
LOCUS       KCLA01000487             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7896upu ultra-conserved element locus uce-2279,
            sequence.
ACCESSION   KCLA01000487
VERSION     KCLA01000487.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7896upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-2279"
BASE COUNT          274 a          137 c          179 g          298 t
ORIGIN      
        1 ggcttgctgc agtctgttct gcattctgtt tattgccgtc tctatgcagt gtgtttaagg
       61 acttccaaga tgggttttaa ccacatgcat ttagattgca gaatttggtt tgaaatcatt
      121 gcagtgacaa ccaaagccct ggtgagttaa atctctgaga tgttatcatt gttggataaa
      181 tttatctgat ctttgcctgt tctgcgttat tggcatgagg gaggcatcag aggtcttcag
      241 cacaagtaaa ccatgtagtt atcttagaaa agaagcctct gttttcagcc aacaagatcg
      301 cgtccacttt ctctatgatt ggagtattac aaagctagca aagaataatt tatatcagag
      361 gttctgtgat ggaatgaaac ggagctcttt tgaagtatga tctctgaaag cacagcatga
      421 agctcaaata aagtgaagga cattcgctat tacaagtaat gtccttaata atcttgttag
      481 tctagtctcc ctctgtacga gacaaatgga acattattgg cttatgggct gtagtaaata
      541 atttagtttc caatattcag cctgctttga cagtaaatta aaatgacatg aaaggggctt
      601 gttgaataaa gaaagtatcc aatcaaattt aattggcatg actaaggcag tagaaatatg
      661 ttttataatt aaaccatgtt gtcttggagc tttataagca tgtatgaatc aaaatgtcaa
      721 aaattattct ttgatactgt gcatttaaaa ctttgcatgg tgaatagttt tcttaaacaa
      781 ggttctagac acgcatattg attcagtgtg aaaatagttt taaataactc tggttttagc
      841 atttatcttc caatccaggg attttatgta aaaaaaggat ctgtgtgg
//
LOCUS       KCLA01000488             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7912upu ultra-conserved element locus uce-5647,
            sequence.
ACCESSION   KCLA01000488
VERSION     KCLA01000488.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7912upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-5647"
BASE COUNT          200 a          179 c          187 g          239 t
ORIGIN      
        1 atttgataac cttttaaaac aactgattta ctgtgaagta gacttaataa ttccttctgc
       61 ttcagcccct tcttccccaa acacatttga ataaactgat gtctttgtgg tctctgcaac
      121 tgtaattcca tgtctcctga gggcataagg tttaggtgaa gaatggagac cacagaccct
      181 tatgggacaa ggattagcta taatcttgag gtgattcttg cagtcgtagg actctgtgta
      241 ctggggaatg tgagctggtg gatcattcct gacgggactc tttttctatg aaacactacc
      301 aatgcaaaac agattgacct tggagcccac aggagtcaac tcgatgaaga gcttagttgg
      361 agctggagtg acaattggaa gccaaatgaa tcatatcaag tgtgaccatt acaggcctga
      421 aaatgattct taattaacca ctgatcctct gcggtagcaa gtttccaaaa tctatgaatc
      481 cataagggaa cctgcaaaac catcccagta gcaatttacc tcatgcgaga gctctgctgc
      541 gctgcctctt tgacagcgct ttgttttcct cgtggtttat gctgggttag aagaggtcct
      601 caggatcctg ttgggttcgg taaagccgct gaggagatgg tttccagaag atctaaacca
      661 gcgtggcccc ttatccatat tcctccttcc actgtgtttg ttccagtttc ccctttgaac
      721 tgcggtaccg cgtgcaagct gtttgttgtt tgcaggtggc acgggcggcc ttttaacgct
      781 aagcaggtgg tcatttctta ctggt
//
LOCUS       KCLA01000489             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7927upu ultra-conserved element locus uce-7676,
            sequence.
ACCESSION   KCLA01000489
VERSION     KCLA01000489.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7927upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-7676"
BASE COUNT          172 a          291 c          266 g          163 t
ORIGIN      
        1 tccaacttgt ggactcaggg gagctggagc gtgtgagtga cccagctgtc ccaagcccat
       61 ctccacgccg ccgagactgg caagacccgg tgcggagctc gcacggcacc gtcggcgccg
      121 cttttgtgga ggtggagctg tgcctgcgct cgccgtttca catcggcaca gctatcgact
      181 gcacgaggct gccgccggcg ccgagcgacg cgggagggta aaagcagcgg cgttaaacga
      241 gagacaaagg gggagagccc cccgttccca aacatctcgg ttccccttga agcgcccgcc
      301 gctggatccc gaagcgttta ataacatggc agaggttaaa tgaaacatga aaaggggatg
      361 tacattaaaa ttgagataac tcttccttca gtgaagtgga acccagcaga tgtagctgca
      421 cactgtaatt gctgcctgtt tcctgtcagt ctgattaagt tgcattgtcc ctgctccaag
      481 tgtaggaatc agcggcttcc catagggcac agcatgggac aacgggctga cgcactccag
      541 cggctccagc acctcctgct caccccagcg acggtacgca cgcacgacgc acactggtgg
      601 ctcctaacac ccacaggctg ggacacacac ggtgcctcct cacccccctc cagccgaggg
      661 cctgctgggg ggaattccct ggtccgggag gccaaacgag ctgccacatc tgtgtggctc
      721 ctcgggagtc accgcgctcc ttcccacgcc ggcctcttcc tcgcctcccg gtcccactcg
      781 cagttcctgg ggcttccccc gtgatggacc ctgtgcatgg gatggccaga gccggctccg
      841 agctggggag ctccgggctg gattcccagc tgccgggggc tgcagcaggt cc
//
LOCUS       KCLA01000490             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7942upu ultra-conserved element locus uce-2126,
            sequence.
ACCESSION   KCLA01000490
VERSION     KCLA01000490.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7942upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-2126"
BASE COUNT          155 a          123 c          109 g          192 t
ORIGIN      
        1 aaaatgtgag agggagtgca ttgcctcctc tctccaggtt gctcttgata cactgatcca
       61 cgcatttccc ataactgtaa ttttctgcca gtcatgactg tagacccttc agtgggtgaa
      121 acataatact tcccttgaaa taaaagcaag tatctgacaa actgtgttcc ttatgtcttt
      181 tgtgggccat tcagtaactt tattttactg agagaacaag gggaagttta taataggatc
      241 agttttgttt gcaatttgtt tctaatagat gccaataagc cggttaacta ggctctagtt
      301 aatggaaatt ttatagtttt tccccctgca gtgcacatga ccttttctta caagagtttg
      361 tgattcttga aaacatgtat ctgctgcctt gcctcggggt ctgcttacaa cagcagggat
      421 atgaccatgg gctcttctaa acttgttcac cagccctccg ctctgagtac atgaaaatac
      481 tttgatcatc ctgccagtgg caaatttata gcaacgtact ggcttttgtt ccatgtgtat
      541 ttctccaaat ataatatctc cctcaagaaa tcaatgata
//
LOCUS       KCLA01000491             242 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7972upu ultra-conserved element locus uce-5172,
            sequence.
ACCESSION   KCLA01000491
VERSION     KCLA01000491.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7972upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>242
                     /note="ultra-conserved element locus uce-5172"
BASE COUNT           88 a           40 c           50 g           64 t
ORIGIN      
        1 gcctggaacc ggttttagtt aattagagtc aatcaatcca aactttgcta acttactcat
       61 gtgaaacaat agtataatga accaaaggct gcaagatgat tgggaaacac aaattattgc
      121 accctgataa attaaatgtg actattgcca acccttcctt ctaaatgaat actcagcgag
      181 ggaatgtatg ggtgaacaag catgatttag aattcagggg gaaaaagtaa agaagctgtg
      241 at
//
LOCUS       KCLA01000492             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 7988upu ultra-conserved element locus uce-4521,
            sequence.
ACCESSION   KCLA01000492
VERSION     KCLA01000492.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="7988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-4521"
BASE COUNT          222 a          114 c          140 g          254 t
ORIGIN      
        1 atctttaaat taaaaattag ttccttttta atgtattaat ggtattccta atgtgtactg
       61 caaagatggc tggatgcctg ttttccttca actgaagcat ttccttaatc cgaggtggtt
      121 acggaaactt aagtgcaaat tcacttccat ctcgcataca atcttctatt ttttacttca
      181 ttcatgtaat ttaatttgtc acttgtaaga tgaaacctta cttgagctgt aaattagaga
      241 atgggaaaca cttgagggtt acgctgtatg tgctgtttct gttacccagt aacttgaata
      301 ctgtttaata tgttgtaaga cattgtagag tttatctgga gctgtttaaa agcaattgta
      361 atgtacaaat gtgaatagtc acttatctat aatatgggta agttttgttt tgcctataat
      421 agtagatgtt tataagaaag tgaaggacaa tgtttgtcat ttcttgcttg cacaggttgc
      481 actattgaaa aattgagatt gtataaacct gtccaaaaaa actacaagat aatgatcttg
      541 tagatgtcaa ataaaagtta ttgtactaac aagaagtgga gtcttgttta ggcaatcact
      601 gtgttcaaaa aacctaacaa gtctgtgcaa ttggaatccg acaggacttg gcatgttcca
      661 gtctgcttta accgggcttc tgcctcgcag tccaaatggc tccgttgaac ttgttaatga
      721 agcaaggagt
//
LOCUS       KCLA01000493            1061 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8004upu ultra-conserved element locus uce-2962,
            sequence.
ACCESSION   KCLA01000493
VERSION     KCLA01000493.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8004upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1061
                     /note="ultra-conserved element locus uce-2962"
BASE COUNT          273 a          236 c          236 g          316 t
ORIGIN      
        1 caggagatga aggaccagaa gttgagatct taagaatttt tctttccctt ctttgcatat
       61 ttgtacccct agagttactg atgctgcccc ctctccactt caaaactcag taacaaagga
      121 aagttaacac taactgtcaa tgtgtaattg caataatgat cacacagatg tgctttccta
      181 gctgtatcgt tcacatcagg accagagtag gagctcagct tcatttcctg cccggatata
      241 attctggtga ccattattac agtatgaaag ctctccttgt tcattatggc cacagtctgt
      301 cagaggctgt agaaggacct tgcagccctg ggtcagctgc atgtgagtgt ttggccagtg
      361 caggaagtaa gcatgggtgc ccatggacag ggtggctgca ggcagcacct acaactcagg
      421 catgtacgcc cctgtgtgca acctagctgt gcattccctt cttaagaaat gtctttattt
      481 atgagcatgt gaaattctga ggaggagctc ttacacttaa atgaacctgc aagcagccca
      541 tagaaaagca agtgcctgca gcgctaataa tgagaactga caaggcgatc ctgctgtgtt
      601 tatttatgac cttctgcctt tgttagctct tgtgagaaat tcctctctaa ccataacaat
      661 attgccggag cttggcactg cactgaggaa tcctacagcg ccctgaggcc gctccctggc
      721 atgggtacag ctcacaacag attggcaagg ttgttgaaat tttcatatgc tttcccttta
      781 tttatttctt tccttaattc atgtttcttt ggtacgttca tttgttccgc aaagcacctt
      841 tcagaagtat tttgggactt tatggagatc tcaacttact catttgctct gttttggtgg
      901 tctgtccaat gaataactca gaataaaatg agctttggtt tgaaagttcc accagatcga
      961 ggttgcgagg cagaaagacg gcagtgcttt aatgctgtcc ctgtttgtag tcttcagcat
     1021 agaagatcat aaatggggtg ctcaggcaat gcagcatcaa a
//
LOCUS       KCLA01000494            1160 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8020upu ultra-conserved element locus uce-4437,
            sequence.
ACCESSION   KCLA01000494
VERSION     KCLA01000494.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1160)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8020upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1160
                     /note="ultra-conserved element locus uce-4437"
BASE COUNT          359 a          263 c          210 g          328 t
ORIGIN      
        1 aaaagctact ctagcattca caacctgggg tttacttttt gcttatacat tgcaccttta
       61 acctactcaa aacttcaaaa gactctgaat taaactttta caatattcag gaatttcccc
      121 actagcaaag atgctagtgt ttacaaggaa aaatgcaagt ccttttaatc ccttttagac
      181 caaacctatt acttttatct tcacctttca aacaaaagga gagatttaac aaaccttatc
      241 aactagtctt ctattactcg ttactttcaa cagaaaaagg gactgggttc tacttgaaga
      301 catcttcaag ggggtaaaca acattgtcaa ccgtgatagt ttgcttggac aaaaaaccca
      361 cactgtcctg aacagtgcat tcattttaaa gcagtggtct tgaaagggtt taaaagagtg
      421 tctagtgaaa agaatctgaa aagattctgt acttactcct cggcctcggc ctctgcctgt
      481 tgatggtcct ccaaaagcat catagtttct gcttccaaat ccactttcag gataagcagg
      541 cgttcctctc ccccgagagc ctacaggtgc aggcttcata tggggtgaag aaaaactgct
      601 gtaggaagag taactctctc ttcctctgtc ctccataaac ccaggcctca attttgaacg
      661 ggagtaaggt gcttcccagc tagacccgcc ctggtttcta cctccgaaag agtcaaggct
      721 attccggtag gagttgtcaa atcgaccacc ataactacct ccgaagcggc tttgttcggg
      781 ttcattataa ccatagccag atctgtacag atctcgccca cccagagaag acccggagtc
      841 gtaagactca taaggtccaa acctggaaaa gttgcacagt gaggagaaaa aaaagtaagc
      901 ttactaatgt tatacatttc aaaagacaag ttatcagttg acatttatca actaaaatca
      961 atgtattact atactggtcc gtacagttgt gttatcgttt aaacttgatt agggctgggc
     1021 aaaacacact atgaccagac agaaagctat ctgagccatt tttgctacaa acaattctaa
     1081 agttcagtac gtctgaactt tgtttgctga aaattttaag ttatttacta aaacagttct
     1141 agagcccagc cctagtctca
//
LOCUS       KCLA01000495             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8036upu ultra-conserved element locus uce-1630,
            sequence.
ACCESSION   KCLA01000495
VERSION     KCLA01000495.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8036upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-1630"
BASE COUNT          217 a          129 c          128 g          222 t
ORIGIN      
        1 ttacttacgg tgagctaagt gcattcttgg ctcgtaaagg gaaatcattt gctcacttaa
       61 gccagatatc tgacttttga cagcaaatgt cactgcctgg atttcccttt gacagtttgg
      121 caaccctgca cccctgttat agtatccact tatttgtctt gttttcagcc agattaatcc
      181 attctgtttt gacaagaaga ctgatgggta attgataact gtgatagaca caaacagaag
      241 agttggatgc tgaataattc agcacttttc agtatcaata agagaacagg ttgaagaatt
      301 tgtgtctcta tttacactta aactaaacta agtcagccca gacatttatg ctgccagtct
      361 atcagaaaac caaacagtgt acattcggtt tccacccgac aaaatgtttt ataagcttgt
      421 aacaatatgt gtgaagctgc cagaataata aataggtaca gcagcccatg catgctaatg
      481 ttatgttgta agcagttttg ttgacaagtg ctaatacttc tttcatacta tcatcaaaag
      541 cagctaatac aacagccatt atttgctggc tttccaagca agacatgatg gattgtgacc
      601 ttaatatggg ttagccgagt tttgaaagtt aaacaacttg caataaatca tagaattatt
      661 acaatgcagt ttaattggtt aaggactgtt tatttc
//
LOCUS       KCLA01000496             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8050upu ultra-conserved element locus uce-7313,
            sequence.
ACCESSION   KCLA01000496
VERSION     KCLA01000496.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8050upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-7313"
BASE COUNT          158 a          181 c          138 g          131 t
ORIGIN      
        1 ccttctacct ctgccccaag gacccaaacc cagcaccttg gcttggcaca ggcggtgcca
       61 gctgccagcg tgaccaggga ggagggagct gggtttgatg ttgctcaaac caccaccaca
      121 agctaaaaaa aaacgaaaaa aaacaagcgc cctctctgtt ttacaagcct tcatttgcta
      181 ttgtttatgt aaacaggtaa attgtttcgt atctcaatta aaaacatctg ccacataaat
      241 gaataccaat taactcatcc tgtttttaat tactctgtta attacacaca ggcagcaaaa
      301 aggatggcag gggaataggg aaagcatgct cacaaccccc cctttcccac cttgctcttg
      361 gcaaggatcc gaaatgtgcc cagataatga tggattaagg tggctggtga aaaccatggc
      421 tcatggccag ctccagcaca gcggctccct cctggcccag gggtgctacc gggatgcctt
      481 gggggtattt cccagcaccc acccacgccg ccctgtttcg gaaaccctga gtcccacggg
      541 acacgccaac gccgcctgcg tcatccctag tgccagcagc ggctgcggca cagcccaact
      601 ggttttcc
//
LOCUS       KCLA01000497             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8065upu ultra-conserved element locus uce-7984,
            sequence.
ACCESSION   KCLA01000497
VERSION     KCLA01000497.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8065upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-7984"
BASE COUNT          275 a          216 c          246 g          255 t
ORIGIN      
        1 atttaggaat aaataccaag ctgatgaatt tccagccgca tactgtgaag cacagtgttg
       61 cctttaatgg caggtggtat aatacagaca aaagaagaga attaaggtcc ctgctataaa
      121 tctcttctgt ctagaagggt gagaagaggg cttcttacag aaccagcctt acagacaata
      181 gtgtatgatc ctgggccatg taacttttag gcaaaccatc ccaaaggcta atgtgtcttt
      241 tccccttcaa gcaggcagat ctcaagctga aagtaccaga cctgtgcatt cagcactgtg
      301 ccctttggag ggagaatggg gaaccaaagg gttaaatttc ggggctgtag aagcagattg
      361 tgttttctgt ctatgatgtg ggctgacaag acatcagtat tctattcatc tgttgggaat
      421 taggctgtta atccaatcaa tgactcttga gcgagctgca gcctgcctcc ccactgggga
      481 acaatcggat cagacgggag attgtttaag agcacagaac agtcccagtg tcaggtggaa
      541 tttccaagcg ttccctagtg aattggggat gggaaagctg tctcagccca tttatcctgc
      601 ctcttaaata accaggtatc tgcctcagcc acactaaagt gataaagcag tacaggagcc
      661 actaactttt acatggggag gggacaggaa ttttagcatc ctgcccttag gaatattgtc
      721 ctgtttgcag cctgggattg tgaaagctcg gcttagtccc agctctgtgt ggctctttgt
      781 aacacatctg ggatccctgt gctgaggaac ccccaagctt ccccatagct gttattttgc
      841 accaacacac ttgtttgatg gccagaaaga tgcccaatac tggaagtagc aggcagtaac
      901 aaatattctt tggggcaacc tacagatagc tgtgtgtgaa agtgcaggta cgcagagtgc
      961 cagctgcaaa ctggagtgaa aatgctcaac ag
//
LOCUS       KCLA01000498             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8081upu ultra-conserved element locus uce-4590,
            sequence.
ACCESSION   KCLA01000498
VERSION     KCLA01000498.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8081upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-4590"
BASE COUNT          109 a           72 c           68 g          114 t
ORIGIN      
        1 atcaaagtac tcaattgtca tttgtctatc ccattcttct ctgttgcctg ttggaaatga
       61 ctggggagca cagacgtccc tgaatggctg cacagctact aattagcata tatattgttt
      121 gtcctggtac aaatttatag caaacagcaa tattttacac tccagtaaag ttaataaatg
      181 aggctttagg ctataaaaat ttcatgttct tttgtgcaaa ggtcaattat aaatagttaa
      241 gcacatatcc aaaaactctg ggcttctgca ctggaagaat gaaatatatt tgtgttggtt
      301 ggtttgccag ctggacaaat ggatctcgtg cagcctctga gacacctctc tccaaaagac
      361 cac
//
LOCUS       KCLA01000499             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8095upu ultra-conserved element locus uce-6649,
            sequence.
ACCESSION   KCLA01000499
VERSION     KCLA01000499.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-6649"
BASE COUNT          225 a          216 c          168 g          242 t
ORIGIN      
        1 tgtaacgatg taaatgattg cctgtgctga tgtaggccag cagagttact ctctgttttc
       61 tacccgtacc tcaaagcacc tagagaccga gcactgaatc agatgtgtaa cagaaagctt
      121 tgttcagtat cggctgtttt cgcaggagtg ttcagtgcca tgagaacgat gaatcctttc
      181 tggtacctcc tctacatcac agacactctt ctcctgactg aggagatggg aagatttttg
      241 taagattcct gcttgtttcc cagtctattt gtaagataaa tttactgtaa agagagaggg
      301 tttgcatctg cctctgccag ttctccagtg tattgaggtc agcttccatt ctccttggct
      361 ctgatgcctg cccgtataaa cacaaattcc atttccatcc tattattttt ctaatcaagg
      421 gtttgtcatg caaaagaaga tccgaagtga ctgccttttc cattatgcaa aacattccat
      481 taggataata tctgcaggac cggctcataa aggtgccctg cccaaagaca tcacaaacgg
      541 gagcagccca agaggagtca aatcctacat cattcgccct ctcatttaac attcaggccg
      601 cagagttcac cctaatttgc cacacacatt tcctctgaca tcctcctcct ctccagacgg
      661 cgagaataag aaccggcagc gttcgtgttc agtgcttatc aaaggatgaa gcaagcggct
      721 gtgaaacgca gtcagactga ggccatcctt tgctttcgtt tgcttccccc gctaaactca
      781 cacttagtaa aatccaccgt caatgaaatc taccttttga gctcaagttg tttccattca
      841 gaccaaagta a
//
LOCUS       KCLA01000500             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8111upu ultra-conserved element locus uce-3813,
            sequence.
ACCESSION   KCLA01000500
VERSION     KCLA01000500.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-3813"
BASE COUNT          300 a          178 c          189 g          256 t
ORIGIN      
        1 aaaagtacag gtgtagaaaa cacctctcga tgtgccatgc caagtgccat tcacagcgct
       61 caaaaggatc ttaactacgg tcttttgcaa aaccttcacc caagcagtcc ctattgcaga
      121 gtaagctttg tgcttttagg caatgcctat ctcacccgct gtaaagacac acatggaaaa
      181 gggctggcat tagccacata tccataaaag cctagcaacc aagagtatta tctttattca
      241 gaagaagtac agcgctttta aggttcagaa acatatataa aaattgggtt ctgaattggt
      301 catttttccc ctctgctatg ccattatagc gatcagccaa gcttctgcaa ggtaaatact
      361 tttggaaaat aagtggaaat ttgctgcaaa tcagtccctt ttgtgcatgg ccacaggagc
      421 atgttgaaat gtttggacac taatacccat tcattttctt ggctccataa ataaaagccg
      481 ccagctatgt ggcggccgtg aaatggtatt cttcaggccc cagcaggaag ccccatcctt
      541 attaccactg cagggggcag gacaggccca aaatagcaag acaactaaat caagacattt
      601 tcaatgtcta acaaaatgac tgtggtttag agagaagcaa aaggttggaa aaaaattggg
      661 cagcttttat acttacgtag tacctttgtt agaagagttc agataagaaa ataagatctt
      721 aaaagaaaag cataagcata tttttgaata taatttaaaa tatgtaaaga tcttatggaa
      781 tcataaggat gttgctatcc gaggggacaa gtcgtatttt ccaaatggta gcccatggtt
      841 aatggaaaat aatgtcttct agtaatactc ttgtgtttct tggcttctga tggaaccaag
      901 aggtttgaag agtccttgga aat
//
LOCUS       KCLA01000501             226 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8125upu ultra-conserved element locus uce-3588,
            sequence.
ACCESSION   KCLA01000501
VERSION     KCLA01000501.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 226)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 226)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..226
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8125upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>226
                     /note="ultra-conserved element locus uce-3588"
BASE COUNT           77 a           51 c           51 g           47 t
ORIGIN      
        1 ctaccagaag gcactatggt ctacttacca ttggtgtctt gtacttgtgg ctcaccactt
       61 ctttagtttc aggaactaaa accggacggg caagagacaa aacaaaaagt tcaaaaaacg
      121 agaggaaaag ggcaaagaaa tagcacaatg ttcccacagg aaaggatgca cacagacagc
      181 aggtgcaggt acagggcacc tgactatctc ttacttctag atgctc
//
LOCUS       KCLA01000502             410 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8141upu ultra-conserved element locus uce-685,
            sequence.
ACCESSION   KCLA01000502
VERSION     KCLA01000502.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 410)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..410
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8141upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>410
                     /note="ultra-conserved element locus uce-685"
BASE COUNT          102 a           87 c           89 g          132 t
ORIGIN      
        1 ctctctcttg cctcttttat cactccagct gtacatctgt ccatctatct ctcatctctc
       61 tgtttttcca tgtcattatg ccatgcctgc ttctctcttt ctttcccgaa gacacatttc
      121 tatctggcac agaaaataaa ctcagattgc gggtagttat gttaatctaa ttcaatcctc
      181 tgtgggttag gagtgaaatt ctaatagtgg agctgttgag ggcttttttg ttaatggctt
      241 ggggattaca ttgagttaaa ggctcatttc ctaatcaaac agagagggag agagtgactc
      301 cgaatattta tgagtctcac agcgcgagtt aaacattgaa ctccaaaagc aggatttcag
      361 tcctgcagaa agagttaaaa cccctctggg ctgctgtgga gagggagggg
//
LOCUS       KCLA01000503             879 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8157upu ultra-conserved element locus uce-115,
            sequence.
ACCESSION   KCLA01000503
VERSION     KCLA01000503.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8157upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>879
                     /note="ultra-conserved element locus uce-115"
BASE COUNT          266 a          177 c          193 g          243 t
ORIGIN      
        1 gaaaagattt tctatttact aggatcctct atgggtttga agggcttttt gtgaagagga
       61 aaactctgtg gggctatttc ccacctcacc agcaatggaa gctaccacag ctgctaggga
      121 acagctcagc cgcagtaaca tcccatggac aataaaatac tgtggtggga atttactaga
      181 attaaactgc tttgctagaa gaagcaaaag catttcagga agaggtgaga aaacagaaca
      241 ctctggaaac tattttgcca atttttctga agatatatcc atccaaagcc ctaaggagct
      301 gatgaatact ttgtgggctt aaaaaaaccc acaacctcat gattccctta ggccctccaa
      361 gcctttcttg cttctaattt caaagaccct tttgtgtggg aaacaaaagg ttaattttct
      421 ccagcttgcc caggctgact taatgtaaca gaaggcagca aattgtattg atttagtgac
      481 atgcaactgt ccagaaagag ctatttatac attattcagg acaaacactg tcataatgga
      541 caaacagcag cagcatctgg gatgttaatg tctacaaata agattattct ttgaaaggat
      601 taggatgaag cattttgtgt aattagattt ctccgtttca ggaatgaatt gccttttagc
      661 agtaaaagct gtcactgagg gagccattag ctccttataa ctgaattaaa tgcataatta
      721 gtgacatgat cacattagga tttgtttcat ttttaactaa tatggggcat gggaggggag
      781 gctttctgca ttgccacagc ccacctcgtc gggcccggcc tcagctggca agctggagtc
      841 cacagagctg agatacgtgt gaacaggagc cgggccctc
//
LOCUS       KCLA01000504             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8173upu ultra-conserved element locus uce-7647,
            sequence.
ACCESSION   KCLA01000504
VERSION     KCLA01000504.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8173upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-7647"
BASE COUNT          243 a          165 c          191 g          311 t
ORIGIN      
        1 cctgtgcatt gtgtggctcg atgtcgttaa gagttttatg gtaatgatta cattagcctt
       61 ccagagtatt ttactagcct tttttactgt cacatttgct acataagcct aattttatgt
      121 tatcgccatg atgttccgcg gtgtgttcag ataatcgata acagtccagg ggctgttccg
      181 ttgggatcac attctatgag tttataatgt acaatatagg ctttgatgta tacatgtagt
      241 gtttgctggc tttccccctc ttcttaaata cagaaatttc tggttgtgtt tattcccctc
      301 gtcagcatac tttatcatat caaagccttt acagacagtg tagaactact gagttatgtt
      361 tgggtcatgt tttgcagtct gccctttaat actgtagctt tagaaatgca attttcagcc
      421 tctgcttatt agaatatgat aaagtattcc tggtctatgt ccagctccac taatctccag
      481 actacacttc atgaattagg catgaagatt ttagtcaatg tgctttcaaa gaccaatgtt
      541 tagggaatca tggattttct acaagctgag ggagaaatct ataataggaa gaactgattt
      601 tcaaacatca tattctgtag aagaaatgac gagtcctggc ctggaaacag aaaacatttc
      661 cttttagaat actcaagaac tggttaaaaa tgtattgtgg gttttacctt agcaaaggag
      721 tagcttttta aaatgcactg taagtgccgg gtggtgtgga gaggctcatg catattagat
      781 accacgtcga cacctcctgg agcgtgggtt tagaaacaag tcacagtaaa gttgaatcag
      841 tttaggggta ttaacctact cacggatgga cggttgtctg ctttacctgt gttctcttat
      901 ctgctggtgt
//
LOCUS       KCLA01000505             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8187upu ultra-conserved element locus uce-771,
            sequence.
ACCESSION   KCLA01000505
VERSION     KCLA01000505.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-771"
BASE COUNT          183 a           88 c           94 g          165 t
ORIGIN      
        1 aacgaaatat agaaatagag ctgtttatct gattatatct ccttatgctt ctgttctctt
       61 tcagtgtaat tgctagaaaa aaatgtatgc aagcaaatca gttaaaccta aactaagtat
      121 gcacaggact tacgttttgt gatgctatca gagttctagg tttaatgctt gtttctatga
      181 tattgctaat tatgattcct agagacagaa aaaagaacat aagaccaggg tctgtagcat
      241 agctcatttt tattgtttaa acagtttttg cataggaaat atattcgctt ccagtaattg
      301 actgcagtat gagcagctgc tagcagtata ggctggatat aacagtaaca atcacattaa
      361 gtcaagcttg atttacacca gtttaaaact tgtggcagtt gagttcattt gtaacctaaa
      421 aaaaaagtac caaaaagaac attattatcc tctgaccagg cataatgaaa acatttgtta
      481 acactcaggc tagaaacagg tctgatgcca gagggcccta attccaaaat
//
LOCUS       KCLA01000506             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8203upu ultra-conserved element locus uce-3031,
            sequence.
ACCESSION   KCLA01000506
VERSION     KCLA01000506.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8203upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-3031"
BASE COUNT          242 a          129 c          111 g          210 t
ORIGIN      
        1 tgttagtcat gctacaaaga cttaaagctt tgaagatttt cttaactaaa aagagctaca
       61 agaacaacaa tgcactttct tccagtcact gatcaggctt ctaaagagta actaataatg
      121 tgaattttaa agagcaaaag gaaacaagaa gatctttaat agcacaacta acagtgcagc
      181 gtaccttctg cagaaacctg tctgctttag tttcctttca tcaatattgc caagaaagta
      241 aatttgtcac tgtgcagttg agaatctctc agagatgtac tttaatgttt cacgctacgt
      301 ttgcaaaaca agagtaataa aaataatgac accattatta ctcttccctc tttgttttca
      361 gttcatcact tgcatatttg aataatgaat tatagtcaca ttatctctac acttttgctc
      421 ttgacttcct ctgctggctg aaagtaaagc tattatccag ttgtcagctc tgaagagcca
      481 ttcaacacag cagccaatgg tcctgacatg tagatatact actgtgcaaa attatctaga
      541 gtacaatttc aagctatata tgagaaaatt accagccagc gtaaaaatgg gtcttcaaca
      601 taggtgaaat attaaaattt tcatcagggc cactttagaa cataaataag tagacaacag
      661 aattagttgt gaattaggca caaaaggcta at
//
LOCUS       KCLA01000507             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8218upu ultra-conserved element locus uce-7836,
            sequence.
ACCESSION   KCLA01000507
VERSION     KCLA01000507.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8218upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-7836"
BASE COUNT          247 a          198 c          135 g          202 t
ORIGIN      
        1 ccccccccaa aatctgggca ccagctaaaa attcagtgaa ttggtatccc aaagtattca
       61 tgaaggaaat ttgcagaaga gcacaagctt ctggtttcaa agagaaactg tatgttttca
      121 ctataaaaag agtgtgaaaa aatcctaacc acacaattgc tctgagtata aagttcagaa
      181 ttagctttcc caagtttccc ctttgttaaa agaagaaaga caatctaaaa atccctcacc
      241 caacaagcaa ggctgaagca gcacccgcct gggggccaat tgcctctcca gcagcggtaa
      301 ggctgttact aggcttgcag taccatttgt tccattacac aatctcctga agccttttac
      361 agagagctaa aacaactgcc tgtaccaaca cgacacatgg ctttccatcc cgactctttg
      421 ctaatccaga cgctccaacc atctttcttt aagatgccat atggttggca gaagcctgta
      481 gatctagcag cacatctgct tgcatgttac ttctcccctc tgattccccc ctccacacca
      541 caaaagagag agcaaataat tatttaatgt gcaagccatt aaactgcttt taaagaggac
      601 tttagcccta aatattctaa aattcctgca gaagagccct tgtttcttgg ttttttgagc
      661 aatacggaga acacaacaaa aggaatgaaa ggcacaccag cgaaacagca gcagcatctg
      721 aattatttaa atcactgttg tttcagacct gatgccccaa gatttatctc ctccatcatc
      781 gt
//
LOCUS       KCLA01000508             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8234upu ultra-conserved element locus uce-7844,
            sequence.
ACCESSION   KCLA01000508
VERSION     KCLA01000508.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-7844"
BASE COUNT          133 a          160 c          173 g          175 t
ORIGIN      
        1 tccccgtgct gctgtcctca tagaaatgct cccttttttg ttactgctgg actccgaaga
       61 ataaccccga gacacaaagc agaggcggct cctccgggcg aatgctgcag tgttcgctta
      121 atccatgtgg atcaaaacca tgagcgctgg cttctgtaaa gacccttccc ctgcatgctg
      181 gattaatcac atggattaat caaacactgt tgcactcgct cagtggtgcc tcttctgctt
      241 tgtgctttcc tttattattc tgtggagcct tgcaggaaca aaaagcggag agtgggtgag
      301 aataccgcgg gcactgggaa ttctatagag ctctgcttcc ctaaggaatg cttcttgagg
      361 ttttccccgt ggatcgtggg tcctaagccc tctgctagtg ttgctgtctg cctgaaatac
      421 gcagagttta aaccccgtgg tttcttctgt cgtcgtgttt ctctttagtt ctgggaggag
      481 agcagcaggc atcgcgtgtg ggatgctctc agcgagctgg ttttgcggga cagacgcttg
      541 tgtgtcccag ttactgtctg caggggccaa cagaggagaa acccttcacc taggaacttt
      601 ggtagccagg agtgactggg gaggtagaga aaccctccac t
//
LOCUS       KCLA01000509            1183 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8265upu ultra-conserved element locus uce-4993,
            sequence.
ACCESSION   KCLA01000509
VERSION     KCLA01000509.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1183)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1183)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1183
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8265upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1183
                     /note="ultra-conserved element locus uce-4993"
BASE COUNT          350 a          252 c          204 g          377 t
ORIGIN      
        1 ggtattttca ataatgttta acaaagtcat gctgctaaag aagaggcaat atcaaggctg
       61 ctcccttttt tccttcttgc cctaagcatg acttgtgttc caggcacaga gttaaccatt
      121 tccatggtgc tttcaccaat ggcttccatc aaactatttt actgagaaac actgcaattc
      181 ttgaaaatag agcccaccaa ttcggtggta aacaaacctt ggcttgaaga caaagcttgt
      241 tttaatctcc atgatcagac tacagatctg accatatttt ttaacaaacc tctcatgaag
      301 aaatcctatt catgattatt acctatatga gaataaaaat gtctcattac cttatattaa
      361 atctgtattt atcaattgtg gctttctctg ggaaattgca atttgaagaa atgttccaca
      421 ttcgaggctg taacagttgg aggtagatgt ccttaaggat gggaaaaaaa gttctttttt
      481 aaatggcaca tttactaatt ataaaatgct cttatctctc tgcagccaaa gccaaaatga
      541 acatgtgcct tgcactaaga aatcccagga ttgtcacaac ttgtgccagc tgttgaggtt
      601 atgacacctg tgccagcatc gccagctctg cccactgtca tctgttccaa ctgttccatc
      661 tgcactgttt gtaccaattc tcccatttct gcatctgtac cttctgtaga aacgggtcca
      721 acaatgccag ctgtgtcatc ggtgccaaat atgccagatg ttctatttgt ccaccctggg
      781 ccaaatcaat gtagttttgt gctcattagt tttagctggt agattctatt tcacaatttt
      841 ttgagatgca cttagattga atcaattcta aagcaccatt acaattgctt tacatctatc
      901 tcaccataaa cagaactttg tttgtcatcc tgtgtttggt caaaattatt ttgatcttat
      961 taaattgcac acaatgataa aagctctgcc ttaatgacaa gatatttttt tcctgtggaa
     1021 gatgtagctg cagagaaatg aacagagaaa gatgagggtc atggtagcca ggctgtaagt
     1081 aattcccatg gttacagtaa aaacttctca tacattaaca tactgattga taaagtcctg
     1141 gtccccaccc cttattccac tactgcagag caggagaaac cca
//
LOCUS       KCLA01000510             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8280upu ultra-conserved element locus uce-1768,
            sequence.
ACCESSION   KCLA01000510
VERSION     KCLA01000510.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-1768"
BASE COUNT          197 a          123 c          149 g          239 t
ORIGIN      
        1 gacagagcct tcactatagt agcgtgaaca gcactgctat aattcctggg tgaactttgt
       61 ccctggatgt gtgtttttgg agtgtgctgg ggtgacattc agcctctaca ttcattttta
      121 tgataattca gagtaaattg tggtgcaata aactcttcaa gcctgtcttt cttgtgaaag
      181 ccatgaatca atcagctgca ggcttttttg ggtcttttca atgtatagtg atcatttaga
      241 tttgacatgc attgtgagac cttggcttag ctcctctcta tggtctgtca ttaattccag
      301 cctttactgt tctgaagtac agtgaaggat gactgagaaa tcattgcccc tcttcagctc
      361 tgttattgca caaaatagca gcgcaataat tttttgtcaa tgttttactc taaaagcttt
      421 ctacatcagt tttgaaaagg aagcaataaa gcccattcaa tggtatgaat aaaaatcctt
      481 tgaggtttag gcgcagggct gcttttcttc agctggtaat caaattggag ctaaaatgaa
      541 attgagtttt cttatgaaaa tagcctttgt tgctgggaag gctggtaatt cataaacaat
      601 aacctgctct tttgtgtgga taataatata ttcatgttct ttcaataggg taaaagccag
      661 acctagtgca ttatggtaca gtaaaaatag cagaaggagc ttgctgga
//
LOCUS       KCLA01000511             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8296upu ultra-conserved element locus uce-2965,
            sequence.
ACCESSION   KCLA01000511
VERSION     KCLA01000511.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8296upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-2965"
BASE COUNT          207 a          147 c          149 g          273 t
ORIGIN      
        1 gacctacagt ccaatgcact gcattgtaag tgatcatcat gcggcataat ttgattgctc
       61 tttttttccc ccatgtctac tgaactcctg ttatttccaa agtgttaaaa atactctgtt
      121 tgctaatata aatgattata attgacactg cattgtcaat ctattgcaaa gctgatttaa
      181 ttaagaatgc caaggggcat catttggggc caggtatcta agctgcaaat ttttttttga
      241 tctcaacctc tccctatagg accgtccaca ctggcaccaa aggctggagg gcaagagaac
      301 aaagggaatt ttatgtgtgt gaattcaaat tctttccctt tgaaatgaag cgtccagaat
      361 gggcaataaa actgtgaaaa tggatttctg gccgcatttg atgttaagcc tttagtgtca
      421 agagccaggt ctttttttct ctctctttct ttttagggtg atttttttcc tttccctgaa
      481 tggtcttgtg gggaatttgt cctataaatt atttcttaca gtttgtatgc atacagtatg
      541 gccctgtctc atagatagaa ctcaaaagta ggctattcca tgtgtgtgag ttttaattaa
      601 gtgatgtttt cagtaaaatt gcaatggaaa acattatgct atttcatgtg gcttcctatc
      661 agcctgtgag tgaaacatta atgttgatta agcacttctg tggaaagagc aactttcagt
      721 caggtcttcc tttttcatac ctagtagaca ccagagttcg tgtcacctct tccatt
//
LOCUS       KCLA01000512             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8312upu ultra-conserved element locus uce-4009,
            sequence.
ACCESSION   KCLA01000512
VERSION     KCLA01000512.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8312upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-4009"
BASE COUNT          255 a          175 c          132 g          219 t
ORIGIN      
        1 cacctcaatt tgacattatc tcaccagaat ttaagtctgg ccctcaatct ctgagcagta
       61 ttttcaaacg aaaacaaatc aaccccatgg gtgatttcca cagttataca gtactgcaca
      121 ataaatttaa tcaaattact aagctacacg taaaggccaa acttacgtac acgggtttcc
      181 tgtcacccgt gagtaaaggc taaaaacaat ttcaagacaa gatttcaagg aaaaatgaag
      241 gggaatagca aagtaaaaca attacctatc tccctttgat tttctttttt gtactgtctt
      301 ccctttgggt cgtctttcac ttcctaaaca ggggctccca ccagggcctg ttacccgtat
      361 tgattcaagg cctttggaag atttcttaaa agtaaattcc actggttctc cttcttttag
      421 gcttctaaat ccttccatgt aaagcttgct ctgtgaatag gaaaaatact cttggttaac
      481 attgccttaa aaacagtagt tacagtcaat caacaggaca acttatttgt ctactgccct
      541 aaaatacaga cagggggata acagctacct ctgtgtgagc cacagcagac agtactacca
      601 actatagtcc tggatacgct ggaaacactg tcggacaccg aacaagtagc aagaatctgt
      661 tttcaattcc agcaaaactt aaataacatc ttccttttct gtgatgaact ctgcagatgt
      721 gagaagcaga gaaaacacca ttgctagaac tactgggatc taaaaaggtt cttaaacaaa
      781 a
//
LOCUS       KCLA01000513             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8328upu ultra-conserved element locus uce-7197,
            sequence.
ACCESSION   KCLA01000513
VERSION     KCLA01000513.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8328upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-7197"
BASE COUNT          136 a          155 c          122 g          183 t
ORIGIN      
        1 aaagctttca ttatgttctc cctctttcac cccttctctc cctccacaat ttggaacttt
       61 aagctttcta gtgaagctat tatggtggcc ataaacaggt gcgtgcttta cagagggtct
      121 cattctgtgg tttccactgg catctctggc cttctgaact ctcctttgct gcctccttcc
      181 ccctcaataa ttttttatga atgatagctt ttcaacaccc tgggaacagc ttgttgggaa
      241 aaacactctt catggggtgc agtcaaatcc tacccatttc ttcaagggat ttttatgaaa
      301 ggaatggcac tatgctcagg tatgacgtct gtgtggatgc ccccttccca cttgatcccc
      361 taccccctgc ctctgtgatt cacagtgata aatttgctct ttaataatgc cagtagactc
      421 tctcaccacg ggtgcttctc aattaaaatc cactttgttt aaaaactgga ggcttgttta
      481 actgagctcc tggggagaat tgtcagatcc cagggtaggt gacaaaatag atcggtggcc
      541 ctctggagct gcattgaaaa taccgcatcc tggggtacca gagggcagca ccgctc
//
LOCUS       KCLA01000514             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8344upu ultra-conserved element locus uce-1209,
            sequence.
ACCESSION   KCLA01000514
VERSION     KCLA01000514.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8344upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-1209"
BASE COUNT          184 a          147 c          116 g          207 t
ORIGIN      
        1 tacgcgacag caaaaggaac tcacgtctaa ctttccgaag acctcgaaat taggatactg
       61 catcattaag ctgttgacat ttgtccagtt caaactattg actcatactt tcatttcttc
      121 cccctcaaat tactacagtg ccacagctga tctaactata ttttccattt cttataaata
      181 gccacaagaa aagtattaat tatcccggta cgatttaatg caccaactgc cttaaccttt
      241 caggttccct taaacgccgg cgtaacaagg catagccgtg gcagcaaatg tgatttatga
      301 caggaatctt taatttctgt ttttaaatat gttccccacc gatctgcata cattgaaatt
      361 cgcccgcaac actttcctct gtctccaggc tgttgtttaa tattcaggga tgatttttgt
      421 ccacatacat tttggtctat gtcacctcag attaaattat tactgtttgc agcctttttg
      481 gagcaggcct ggggccctta tttacaagaa tcaatgaaac agtaatgaaa atccattttt
      541 catactatca gctcgggcct gcttttattt agttagctgt gtctaagcaa gcaattcatt
      601 ttgtgcaaat gtcacgttga gaacaggacg aggcgccaaa gggttaacgg ggag
//
LOCUS       KCLA01000515             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8359upu ultra-conserved element locus uce-7488,
            sequence.
ACCESSION   KCLA01000515
VERSION     KCLA01000515.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8359upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-7488"
BASE COUNT          247 a          210 c          184 g          219 t
ORIGIN      
        1 agcccaaagg aggagcagca gctccttctt cctggtacag gagggtacct gaaggcagtt
       61 atgtctccag ggctattggt ctcggtctct tttcctgact aaccagccac tcggctctga
      121 aacgagctgc catttccaca gaggtcacca actctgcatg gtagtgtaca aatggcaacc
      181 tagtgactgt ttctgtatcc aaatacgctc aaaagccaaa gccagtctcg tctcatgtgt
      241 gtttcgacct gaggacccat aacaagggct gcggagggaa aacatgcagg atacattgtt
      301 ccgaaactca ggaaaatcac accagaggaa agaaagagaa ggcaatcctg agcctttcat
      361 ctacttgaaa actgaccttc ctaagcttga aactgcctgt agcagtccca ggacaagttg
      421 ttctgacatt cttttaacat cgtttcatca gcacagccaa aactaatcac aagaatatta
      481 cccgatgaca ggtgcattta ttctgtcaat taaatcagat ggttaaatcg aaatgtgccc
      541 caaatctctc ttgtttacat tatccatatt ggcatttctt ggctgtggtt cattgctggc
      601 tggaagtcat ccagcccctg cagagtcact ttgcaatatg gtgccagcaa gtttccatgc
      661 tctgcaatgt cagttacact gagaccagag cggtcctaca ggactcacct gaaatactac
      721 ttggtttcgc tcagattgat ggcaaacaac aacaaaagaa aagaaatccc attcagtgca
      781 ggagacttgg ctcatgcttt tgaaatgcca taggaagtgt cacgtcacac ctaactagca
      841 gtgacatgcg tgcattagaa
//
LOCUS       KCLA01000516             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8375upu ultra-conserved element locus uce-1245,
            sequence.
ACCESSION   KCLA01000516
VERSION     KCLA01000516.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8375upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-1245"
BASE COUNT          128 a           82 c           79 g          105 t
ORIGIN      
        1 ttttgcataa tatttacctc aagcttgctt caggctaatg tctcaataat ttccactcct
       61 ttctcaggtc cttaccacaa aggacttgac taatgatcca tggataaaat gaagcattta
      121 aatttattca ttaatcattc atctccagct cattgaaaac tttaaacttc cacaaaatta
      181 agatagaaca ttgaggagtg attgagggag acagctcgca gagagctaaa aaagagtggt
      241 aaacacaaaa acacaagtcc attagacaga gtgcccgtgt cacatgggca cgggtatcgc
      301 tccagtttac gtaaacttta agtactggat tgcaaagcct tcagttgggc caacgcggtg
      361 gggaaatctg gggaagcgta cagtcactgt caac
//
LOCUS       KCLA01000517             718 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8391upu ultra-conserved element locus uce-5340,
            sequence.
ACCESSION   KCLA01000517
VERSION     KCLA01000517.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 718)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..718
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8391upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>718
                     /note="ultra-conserved element locus uce-5340"
BASE COUNT          218 a          126 c          133 g          241 t
ORIGIN      
        1 ttccaaacat tctcaaagtt gtgtggggaa gttttatagg tggatttaca ggcagtattt
       61 aaagtgcttt tgaaagtcaa tgaatttggg aaagatattt tcctttttct aaacagtaat
      121 gttatcaaac ctcacggtgc aaataacata gataagcaac caattaattt attatttaat
      181 tttcattttt atccatcctc cctctttata acaatttgtt ttctctttgt agccttaatt
      241 gttagtttgc gttggtttaa tctctcttat ttaagtatgt ttgctttaat aatatttaaa
      301 aaaactaaga caaagaaact gtagattaga gactttattt tcagggcaaa atgatacgga
      361 taagtgagcg tcaactgacc agaaattatt tgcttctgtc tgttagacac gtaatggagt
      421 catttaacta gtcaaattag gagctgtaga aatgcaccat gcttcattac tgagttcgaa
      481 tgggcaccat tttacattta cgtcaaaaat tatctcatag caaattaatg ttttcattgt
      541 gcgtggaagc cggagctgtg cagtgtcagc accacctaga ggatgcggca cagatggctt
      601 ggaaacggtg tcaaacgaaa caccggagcg gcatagctta tctttagaaa gcaaagtact
      661 tcaaacatac ccctgctttc cccagaatag ccctgggagt ttttcttgct ttgcaacc
//
LOCUS       KCLA01000518             471 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8407upu ultra-conserved element locus uce-5722,
            sequence.
ACCESSION   KCLA01000518
VERSION     KCLA01000518.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 471)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..471
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8407upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>471
                     /note="ultra-conserved element locus uce-5722"
BASE COUNT          135 a           93 c           66 g          177 t
ORIGIN      
        1 aagaaaaagg tggccctcaa ataaatgaaa ctcaatttca cggcgcatta tctctctcaa
       61 ttctttcctc tcagctttca ttttcattaa aatcacagac aaccataaat taataattac
      121 ttcaggttga ctaaatgcag gccacactat ttagctctcc ttttcctaca gtggcccttc
      181 ttgttcattc tggaaaaatc ttaatttaga taatgtagct tgccccttgt catataattc
      241 tgttttgcag tttcactgat ctataatggt ctgttcttat taggcagtat tagctttatc
      301 ttttgttcaa tcaagcttca cagtttcctc caacaagata actattgaga aataccagat
      361 gaaatgtttg atttctgcta tattttaatt cttctctgtg ttgtaatagt gttctgtaac
      421 aattgtaatt tctttcagta ctaatttagc cgaactcaga ggtgaaactg t
//
LOCUS       KCLA01000519             580 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8423upu ultra-conserved element locus uce-3335,
            sequence.
ACCESSION   KCLA01000519
VERSION     KCLA01000519.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 580)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..580
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8423upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>580
                     /note="ultra-conserved element locus uce-3335"
BASE COUNT          167 a          142 c           98 g          173 t
ORIGIN      
        1 ttactgtctg tgagcatgct cacaggggtc gccccttccc cttctccccc cctcccacaa
       61 gaaaaacata acccctatag ggacacatca atagttaagc cttaatacca tgtagcagca
      121 ttcaaagttt tgatctctta aaaagcagct gctaagaacc caactagaaa agcactgaat
      181 ctcattggtc ttcccagctc ggttacagag agatgcaaaa taaaaaaagc tggatggatt
      241 ttattgaaaa aggcaagaaa agctgtatct gaaggacaaa tggaacaaag ataaggctga
      301 ctagggaata ctttgcttgc cagtttcatt acactttact tctttatgca accaactact
      361 gaaattcaat atatgagtag gaatggcaca tgttcgtgtt atgacacaaa cctttttgat
      421 ttatgcagtg cacttacctc gtatgggctg cttttctctt ttcccctccc aatacccgtt
      481 tctggtttat tttcacattt ttattaggta tcctctaatg aaatgttgct ccttccccct
      541 cagtactgcc ctagcactcc tgctatttcc cagtccatga
//
LOCUS       KCLA01000520             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8438upu ultra-conserved element locus uce-5095,
            sequence.
ACCESSION   KCLA01000520
VERSION     KCLA01000520.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8438upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-5095"
BASE COUNT          251 a          112 c          114 g          255 t
ORIGIN      
        1 ccacaggttt tctaacaagg cttgcatatc caagacatgg gacaatttaa aaatcatttt
       61 gatacattat gaatcacctg tataaaaata aataagtgaa gacattctca atttcagtaa
      121 atatttatag agccaaacaa taagaagtat atgtaacaat caaatttcta gtgaaaatgt
      181 gtgcaagtag gtttattttg aaaggaaaat tcctactccc agtgtcatac ccaattaaat
      241 tctccaggta atgaccccat ttgcatagag agctgaaccc acaagtggga attttaatgg
      301 gcacaccacc tgagtacatt aattgagagt gacactactt gaactagttt tgtgcttacc
      361 ccactgaaaa ttctactcat attattttta atgtcaagct tcaagtcaaa tttcaagatg
      421 atggatttgt tcttttttaa gcattgaatt tgaataaaag aaagctttaa ttctgtaatg
      481 cattgcatag ctttaactaa tctgtggttc tgattctcac caatgcttct ttatttcagt
      541 gattggaatt taattttatt cattaatttg tgaataatta gatagaaaat aatgccttca
      601 gcagttaaat tgcttttgga ttgctgttta atgtactttt accagaaaat gtgttacagt
      661 taagctggca taatagttta ctaaaatgta attgtgtaaa tatgtctaat tactctttct
      721 gaagcaacaa ga
//
LOCUS       KCLA01000521             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8453upu ultra-conserved element locus uce-7025,
            sequence.
ACCESSION   KCLA01000521
VERSION     KCLA01000521.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8453upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-7025"
BASE COUNT          117 a           69 c           42 g          109 t
ORIGIN      
        1 tttggaaaga aggagagaaa aagaatcaaa cctaatatgt ttgtaaattt ttaaacataa
       61 atcatcaact ccatatccat ataaacctgt agctcaaatt actaacttaa catacataaa
      121 agaatcatat caatatttaa aatcgtttta tgcatgtatt ccaggttgtc caacttcatt
      181 aagggcattc atcagccctc cagctacagt gtattcccat tggagttgta ggcctcaggc
      241 cctaccaaac agaaatttaa actaacttgc ctttttaatt tacattattc tcaaatattc
      301 tcttttttaa ccccctgcca tgactaaggc gtttaga
//
LOCUS       KCLA01000522             964 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8467upu ultra-conserved element locus uce-2713,
            sequence.
ACCESSION   KCLA01000522
VERSION     KCLA01000522.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8467upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>964
                     /note="ultra-conserved element locus uce-2713"
BASE COUNT          276 a          155 c          216 g          317 t
ORIGIN      
        1 aatgtaagcc gagggaataa tgtaggaggc tgtctgctgg gtaatatgca gtgaatttga
       61 atttgccttc ctgagtgggc agacagtatt caaaaaattc agttatactt tctgtgcagt
      121 ggtaatttgt tgcatttaaa attgtttagt atatgcattg cctagtcagt tcagtatcaa
      181 acatactgta acttggatgt tgatgagtat cgtcttgtaa aaataatatt aagggaattt
      241 gtaaagaatt aatctctgat aataagatta acatgatgca ctgtaggttt tgtcctacta
      301 tttgttaacc gggaaaggat agttgcaagc tagctacact gcttccttct gagctactgg
      361 aggctgactg agctttcagt tatttacctc aatagaaaac tgaaagggaa aaagtgaaca
      421 aaggaggtct gttttgcctg tcccacttgc tgggctgttg tctttgccct tttcagtgaa
      481 ggagggggta gagctgggtc aaagttgaag aacactgaaa aggaattcaa atcatatatt
      541 aaaacgtgaa tgatagctga gtttcagtgc taaacacatt tcttggaatg attaattttt
      601 ttttttagtc tgtgggtgct tagctgacag atggtgatgg actgaaatgt agactgctag
      661 aaggtactgc taggtatgtg ttcagacccc aattaagatg ctcagtaaat aagtacatct
      721 ctgataggtc ttttaatact ggagatactg atgctagaca ctctgtgaca cactagacat
      781 ttgattgtgt gaattaaggg caggccctgg cagctggcat acactcagac ttccttgtct
      841 agcctaattg cattgcaaat acttctctgg atttctcttt agcttctccc ttctagtaaa
      901 tgttgaataa gcacagaaat gttcatctgc atcctctatt aactgttgta agacattttt
      961 gggt
//
LOCUS       KCLA01000523            1023 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8482upu ultra-conserved element locus uce-7289,
            sequence.
ACCESSION   KCLA01000523
VERSION     KCLA01000523.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8482upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1023
                     /note="ultra-conserved element locus uce-7289"
BASE COUNT          318 a          209 c          193 g          303 t
ORIGIN      
        1 gaactacatg agtaaagaat gttaatcatc ttaattgccc agtagtctga aattagattt
       61 aacagtctga taatgtatct ttaaaggaat acaaccctgc tttataaaaa atcccttcca
      121 agccaattct aataattcct atttatcttt tatgacatta actgttatac cagtctgccg
      181 acagacagcc ttacgctcac atttagttta aatgtggttc agtatagttt ttcattatca
      241 ttaacgtgct cctggtgggc agagtgcaat gcagtggcac tggtcacact tcattgcttt
      301 atctcatatg acaaagagag atgatgtgct tcagtccagg ccaggagatg aaagcaaaag
      361 gtggccatgg aaaactcccc ctgctgccta ggaacagcac aagggctgca tcgtgtgact
      421 tgctaacagc acgaaggggc agacaaatag attttcctct atatttataa ccagcatcat
      481 tcttcctttc aggcctttca gtgcaggtag ctgttttata tgaaatgaac aatctttata
      541 gacgtaccag agccataaca aggctgattt tcagcgaggc tgaggtatat aactcttacc
      601 gaattgtcag gcttcttgct caacaaatca agcctaactt atgatgtttg cagtgtaatt
      661 tttattcctg tttgactagc caactaccca gtggtaatag gatgttagaa aagggcagta
      721 gcaatgtttg tacatgccat gattgatagg caaactctgc atttttcatt tatatctcct
      781 gattccaaat cagttaagtt taggaaaaat gaaacaaaat ggcaagaaaa atgcttgcag
      841 attgcagccc agcactctcg tagatctgag ttcagcccac atctgctagg attgtctgga
      901 aacattaaga tatctaaatg aaaatcaata ctatatgtgc cagcatttac taccaagaac
      961 aagtatcaag agacctcagc taatcaggct ttcaagcttg tacttgagcc atagtctgaa
     1021 ccc
//
LOCUS       KCLA01000524             987 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8498upu ultra-conserved element locus uce-5013,
            sequence.
ACCESSION   KCLA01000524
VERSION     KCLA01000524.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8498upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>987
                     /note="ultra-conserved element locus uce-5013"
BASE COUNT          262 a          197 c          266 g          262 t
ORIGIN      
        1 gcacaggggg agagataacg gtaatgattg cattgagaga agcttgaggg aggcttgttc
       61 tttgtaacac agcttcaaag gtgtctggac cggtgcctaa gcaaactctt ctgtgaagtt
      121 gctgcctctg taggtctggg caaggcgatg cttgcaccct ctgtttctta gcagatggga
      181 caaagattag taaatgccag ggtagcagct tccttctgga gaattttttg ttacttggtc
      241 tctcgctgtc cattctggga agatggtttg tccaggagag gggaagggag caagcagcag
      301 atagggtggt tggggagatt gggtggagga acgggatgtc agtttatcga tcgcacctca
      361 gtcaggagag ctgcaggcac agtgctctga gcacgagcgg cagcgtgctt aatgtgattg
      421 aaaggcagtt aaaatggcgg tgaccttttc agggggaatt agattgcctg ccaagagtgg
      481 ttagagggag tgataacgcc agcttgagga agctgtccag tctgcttcaa agggagagag
      541 acagagacag ggaaagcaag ctagcagcaa gcaccattta aagcacgaac cgtgtggtct
      601 gatagaacag agattgctgt cctccttaga tatgaaagaa tttaagaatt gtagctaagt
      661 tctttccatc caccctgtca ttttcttctg tcctgtgcct tcccctccaa aaagccctcc
      721 tccaggcata gtatccagtc accactgccc ttcttggttt ctttttcttc agcagactag
      781 tagcttcaaa aataacacga gaggaatact ttgaaaatgt taaaatggta ttttcaggga
      841 aggattcttt ctgagaaaga tgaatatgac atgggtctgt cagatcaatt gcaatactct
      901 tgaagaagaa acatacaagg attacttaac tctgaatttc cccatgctgt tctcctccca
      961 ggtagcaaag ggctgttcat cagtgtc
//
LOCUS       KCLA01000525             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8512upu ultra-conserved element locus uce-2585,
            sequence.
ACCESSION   KCLA01000525
VERSION     KCLA01000525.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8512upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-2585"
BASE COUNT          268 a          149 c          122 g          235 t
ORIGIN      
        1 tttggatccc ctgttatttt tcccaaagaa tctagggcat tgccattcac atgtgaaaga
       61 aatataaatg ttgccaagaa agtgcttcta agtgtccctt gtaggtgtaa aagccaacaa
      121 caaagacaaa gcatgcactg ttgttaccca gtacatatct attgtatgct agagctcaaa
      181 atctgttaag aaaatagaaa agttactttt tttcttctac acaaatttgt taatgggtaa
      241 cataatggaa agccatgttt gctggcattc tgtgaaacat ctacaaattg cctctgcaaa
      301 gcattatagg ttgtcagact aatgtagttg aagataattt ggcctttcag tgaatagaac
      361 ctcacagcac gattatactc cagcaccaag tagagtgtca caattactct ttcatgctga
      421 attaccatat aatgtcataa gcctacctgt cataagtcct gcagctgagc tcaaattttt
      481 tctaaattta tggttcatgg caaaaaaatg aaatttttgc ttctaatgga aatctgattg
      541 tttttatcaa caataaattt catagcaaat caaaggatat gcttggacaa acaatccgat
      601 actcaaggtt aaaaaacaca caaataataa attgctggtg tgtcatgttc aatttttact
      661 actgcattac actgcaataa ccataacagg atctaaattg ttgtcagaac attaaacaaa
      721 cccccttact tcacaaaggc atcctgcctg agtaattcac acaacggaaa caac
//
LOCUS       KCLA01000526            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8528upu ultra-conserved element locus uce-4626,
            sequence.
ACCESSION   KCLA01000526
VERSION     KCLA01000526.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8528upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-4626"
BASE COUNT          254 a          263 c          251 g          276 t
ORIGIN      
        1 tttggggact agccaagaaa atgtagatga gctgtctgac atcagggaaa tttgcgtagc
       61 tgaattatat cacttgtgta tttggaaacc ccagaggatt tgttagcatc caggtggatg
      121 ttaattttaa gtaacagccc agtcaaatgc agaggcttca gtgttgaatc aacatttacc
      181 taggtagatc agaggatttg ttgcttgaaa tcagttttca gagaggccaa atgaataatg
      241 caactaatta ctagcaagat gagtttctct agtgccctgt taatatttga caaagacacg
      301 tggcctgatt ctcacttcag tgcagagtaa gagtgtcccc catataatag agagctgaga
      361 cccttgactg tgaccactgc ggtcttatct gtatggccag ggaagggtgc agcagtagcc
      421 caccattccc tccccaaatc tgccactcag cggggtgagg ttggggaata atgaagtcag
      481 cacattagtg ccctgcctgc tgagctcaca ccgctgaaag ctgcctctgg gtgaatttcc
      541 cagcgttcac aaactttgtc tcagttctgc aggtttgctc aagtgtgcga cggctgtttg
      601 cgagcgagcc ttcccgctgg gtgggtttgc tctcctcctc gccgctcagg gaaggtgagg
      661 gctctccttc atgtgttccc tgccccctcc ccacccctcg atcaccccat aaacacaatg
      721 ctcttgcagt gggtcccctc ctctagggag cttttccctc tcccaactcc cacactggga
      781 catttttcca catttccagg attatgggca ctttcactta gatctatgtg tgttgcctcc
      841 acatacaaag aagcacttgg ggacgggatt agtaggatta gaagagattc acatatgtcc
      901 agttcaagca attggtattc aaagctttac acttccaaat gccaccaaga gagagaaaag
      961 gagctgggag cttgctttgc atttcagcac cttcctgcgg gggacagggc cctttgtccc
     1021 ctggggggca cacacacaaa tccc
//
LOCUS       KCLA01000527             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8544upu ultra-conserved element locus uce-2450,
            sequence.
ACCESSION   KCLA01000527
VERSION     KCLA01000527.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8544upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-2450"
BASE COUNT          237 a          161 c          138 g          227 t
ORIGIN      
        1 gtgctgtgtt gcccagaaaa ttcatgtatt ctcagaagac ctcaaaactt tctgaagata
       61 cattctgcag caaaatagtt cactgtgttt tcacacaggc acttttccca agtcttctaa
      121 acacaagatg gaatactgac attccagttt gtggaaactg ttattactgg tgtcagacaa
      181 gagcagagct gatcagaaaa gaaaatgtat cagttatcca aatgataaag atactgcaac
      241 aatgccaata caataatgaa tatgtaataa atacctactg ctgtagtttc tgtgtattta
      301 attaccattg tatttcagag agtgctgttg tctgcatcac tctgtccaac aaaggaagga
      361 tgtcccattg aacagattgg ttaatgctct ggggcaacag atgtctactg gaactgcggg
      421 agaccagcaa ctggtggcct gcccatcttc tgaaaacttt caatagactc atgcatatgt
      481 tcacacaata gggcatgtgg tagaaatgca aacctctttt taaccctttt atatgctctc
      541 tttccctcct gatatatgaa ggtctttgtt ttgttttttt ctttacagca tccttggcac
      601 acaggctcag ggagtatata gtgctcactc ttcagcctaa catctgaact ccaaacatca
      661 aacaaaacag attagaaact ttataaaata gccagactag atctgacatg tttagaagag
      721 ctttcaaagc tctggaacac atttccacct gacagcatcc tga
//
LOCUS       KCLA01000528             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8559upu ultra-conserved element locus uce-4335,
            sequence.
ACCESSION   KCLA01000528
VERSION     KCLA01000528.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8559upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-4335"
BASE COUNT          289 a          202 c          197 g          300 t
ORIGIN      
        1 ttcattttac tattaaagct gactgagaga caatctggtg attattctga acaaatttag
       61 agctactagc aaaaagaaca taacaatttt caagttgtag atggctttgt gcacatgcac
      121 acttctatgg tgtattctgg ttcttgtgtg tcccaagctg taatttctct catttcacct
      181 tcttgaaatg tcaattttcc tatgagcctc aaatctcaat tttatttcac tttagggaaa
      241 atggaagcaa agaggtttaa aaaaaaacat gagagaataa aaaaagggaa gaccataaaa
      301 acagcaaccc cttcagtcct tgcttctgta ccaccagttc caacatagac cctattttag
      361 cagaggtgcc ccagctctat cgtatgtact gtgcagactc atcatggcca tggtgcatag
      421 ctgagagccg gaaagcaaac agctgctgta gcctgatttg agttaaaata gtgtcagtgt
      481 ttagtctggc gcagtgcttc aggagagatt ggcagctggg tcaaacaaag tcattccatt
      541 ggctcccttc ccagtaagct tctgctagta tttaggtact agtgcagcct aggccccttt
      601 tctcagggaa agcctaacat ctgaccgcac cctctttgct ttttaaaaaa tgccttttca
      661 ctctttaaga taaatcctct attatacaat ctgccactaa ttgtgtatta gggctgcttt
      721 tctctcaaaa tctgacgcat ctcggcacag tgtagaaagc aggctgttac agtgctgaat
      781 taataaaagg gccctttatg gtttgtgaaa gaatatctct gtgcttaggc aggaaacttt
      841 ttgatccaca gaaaagccag acgacatcta ggtaaggcca tgtatcaaat ctgcttttat
      901 gggacagtgg cacagcaagc actgttaatt gcgattgctt aacatttgca tgtccatttt
      961 gataagcttt tgggaaaatt taggaaat
//
LOCUS       KCLA01000529             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8575upu ultra-conserved element locus uce-1201,
            sequence.
ACCESSION   KCLA01000529
VERSION     KCLA01000529.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8575upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-1201"
BASE COUNT          172 a           91 c           99 g          198 t
ORIGIN      
        1 tcatgttctt tctcctacaa gaacaccctg gaatataact tggtagaaga aaaattaaaa
       61 gtcaaattta aaccacaaat acgtgagctg attgtgtata tttattaact aaataattta
      121 ataataagga aaatgcctac ttgattaatt gttacagagt aaaaattaca ataaaactgt
      181 cttgatcagt gctttgcaga agcaccatta ctgtctgtgc agttgtttaa caaggattta
      241 attggaaaga taagtgaatg cacatttaaa agtattgtta atttgcttta taatcacccc
      301 atccttcaca gtattgacag caccaggcac aaaccccttt ctctcttaca agtattattt
      361 tccatatgtg cacaataaat tctgaagcag taattggaaa ttttatggat ttgaacatac
      421 ctagtggttt gagtttatag gtgccgtatc ccttctctaa aggtagctct taggttgcat
      481 tttgagtgaa atcgttgcct ttttcttacc ctttggaggt tgtggtatgg cagttcctta
      541 gggttctttg gttgggtttt
//
LOCUS       KCLA01000530             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8589upu ultra-conserved element locus uce-1986,
            sequence.
ACCESSION   KCLA01000530
VERSION     KCLA01000530.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8589upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-1986"
BASE COUNT          124 a           59 c           72 g          129 t
ORIGIN      
        1 atcttctgcc aatttaaaaa atatggtaat gcaaagcaat tttgtttgct ctaattctgg
       61 tgccagatta ggtaattaga atggtgtcta atatccttcc agtaaatgtt tctccataaa
      121 tgcaaaatgg aatcgagggt ctgtgggtta cattagctta atgaaaacaa gactttaatg
      181 catattgtta cagcagtgtt tgaatgcact tattaaggcc catgttccca caaccatatg
      241 gtttttgtca ttaatgtctc ctttgaggaa aagcactaaa attagaaaaa aagttgcatc
      301 tttgattcca gtgatcccaa ataaatgata tggtaaccat atggtgtgct gtattgatag
      361 aagaatctgg aattgtcctt gtaa
//
LOCUS       KCLA01000531             307 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8605upu ultra-conserved element locus uce-232,
            sequence.
ACCESSION   KCLA01000531
VERSION     KCLA01000531.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 307)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 307)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..307
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8605upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>307
                     /note="ultra-conserved element locus uce-232"
BASE COUNT           90 a           46 c           56 g          115 t
ORIGIN      
        1 taacctttat gacttgggga accatgtatt tacatatctt tatcttcgca tgtgcgtatg
       61 tgtgtgttgt gtatatattt ttaacagttg acagctgttt tagagcatac agagatgcca
      121 agctgaatga gggtcttgat tacttcaaga ttagctatct aaagtttcta ttcattttaa
      181 gtgttgttag tgcgaagagt cattagtcac ttccttgtct catagaacat cagcatacat
      241 ttacattgtt aatgaacatt tggggtaaat gaattaatgg cacttttaaa catcaattca
      301 atactaa
//
LOCUS       KCLA01000532             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8621upu ultra-conserved element locus uce-4159,
            sequence.
ACCESSION   KCLA01000532
VERSION     KCLA01000532.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8621upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-4159"
BASE COUNT          128 a           79 c           56 g           91 t
ORIGIN      
        1 agacaagctt aaataaagtt ctctgaaaaa agcaagacat gctgtaattc caagaaccta
       61 ttacttcaga caatttactt caaaaaataa aatcagaatg gtaaatgatt acccaaaagc
      121 aatcatgtca tcatcactga aagatggaat aaaataattt tttgtgaagt ggctgaatga
      181 gagcaactta aaagccacgg agcctgtcag aagcacatta tttcttttta caccccgttt
      241 cccaattcat ctcagtgctg ctgactaacc ttggctccca gcaggtggag catttaaaat
      301 aaatagcatt tcctacaaaa cgcgctccaa ctgccccatg acagacgctt ccaa
//
LOCUS       KCLA01000533             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8635upu ultra-conserved element locus uce-2472,
            sequence.
ACCESSION   KCLA01000533
VERSION     KCLA01000533.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8635upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-2472"
BASE COUNT          125 a           78 c           92 g          166 t
ORIGIN      
        1 aagctgtggc aaggtccatc ttgttctttg ggtacttctg tgtcttttat tgtgctgaat
       61 gttatgtgtc ccgtttgggg acctcgtaac agatgcggat tgtctttctc ttaaacatat
      121 gtattcattg ggttttcctc tgcatataaa tgtgttctct ggccattttg aaggatgtgc
      181 ctgctacact gtttcattaa actgccacgt tatcgggtaa ttgtttaaac ataatgccat
      241 agcactatca aaaggaaagg tgaactaatg gcattttcaa atgtcaggga ttatcttaac
      301 acttttatta tagtttataa aaagtaggtt cagggcattc catggcaatt atttccacag
      361 aaattggtta tttaaataaa ttgctaatta tctggatatg acagtattga aaaccccact
      421 aatgagttat ttgataagtg cagcttatgg tggccaccta c
//
LOCUS       KCLA01000534            1152 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8651upu ultra-conserved element locus uce-2527,
            sequence.
ACCESSION   KCLA01000534
VERSION     KCLA01000534.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8651upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1152
                     /note="ultra-conserved element locus uce-2527"
BASE COUNT          310 a          333 c          248 g          261 t
ORIGIN      
        1 tgcagcacct gagaaggtgc tgtctgggca gcatgaacag acagaacctg gaggtatcag
       61 aggagaacag gacccaggtg tccctttctg ggagcacaag ccagccatta gcctgctgtg
      121 cctccatagc tcccaacctg agccaccacc tagcccacca gttctggttc attgaccaca
      181 cacaacctct tacaactgct gttgtaaaca gcagactggt ggaggaggcc aaaagtggca
      241 ctggtaaggc tcacaggcca cctcccagct ctctcctctc tcagcacagc caccttgcta
      301 cgtgaaggaa accttcggca accgtcttgt gctgggtgac agggcttgtt gagctcggct
      361 gagtaatccc agccgctccc ctcactgcag ctgcatgcat cctcgttctc ccaacccaag
      421 gatggctgcc tcgctgaatc accccattaa attgctaata tcttattgtt ctttaagatt
      481 tcgaaacttg ctgcgaaacg tttacagata attttttttt gcctgcagtc actgtgccta
      541 atgcccagtc attgagtgcc atatgtgttt atatgcactg caattttcca cttgattaca
      601 ttttaccaca aacactttca tccactccgc aaagacagca gaacacatcc ataacgttca
      661 gagcagccca gacagacaga gcccggacgt aaatgtctcc gctggccaaa gcgcatcaga
      721 attggagatc ttcaatcaaa ctgatccaac ctgcagtgct aaagtctcca caagcacctc
      781 tgtcatctaa aggaacatgc aaagttagct ctgtgctcca gctttcccat gaagtactgc
      841 atgctgcacg cgagtctgga acagctgcac accatggaat tagttgacaa taaccaagga
      901 tacatctgat tttccaggag acagggaatg acccacaaag attctcaaca tctgaacacc
      961 aagctccaga aatccatggg gacagcagca gcacggacaa gttctgcacc agtgaaggtg
     1021 agggagagtt cttgctaaac ctccagctga ctgagcacag tccagcctgc ccatagtggg
     1081 aatcacagct cctgattgca gcaccttcat cacaatacat agcacactgc ctagagggca
     1141 ggactcccct tt
//
LOCUS       KCLA01000535             447 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8666upu ultra-conserved element locus uce-6922,
            sequence.
ACCESSION   KCLA01000535
VERSION     KCLA01000535.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 447)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..447
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8666upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>447
                     /note="ultra-conserved element locus uce-6922"
BASE COUNT          137 a           89 c           90 g          131 t
ORIGIN      
        1 tatcctatca ttggaagtca ctgacatctc ttgttagtag ttaagagatt aatggtgcag
       61 tctgctccat aggttttgcc ccagtgcctc agagaggata gtttaaacgt gtctccttgt
      121 gcattttctg tacgtgtatt tctttttctt gcaggtttgt gtattagacc ttcggaaata
      181 gcgctactag ttggaagcca tggaccgact atgaatgtgt acatagccaa aatgactgtc
      241 cctgacccat gtactgctat agtcccaatt gaaccatggc cagtccacta cagccaaacg
      301 taaaagaaat atatacatat actgtatata aaaaaagaga aaagaaaaaa aatgacaccc
      361 tgaagaggat gacagagttt tgtcacagct tgtgaatcct gttcaccaag tgctggaatc
      421 tgtgccccaa aataacattt aaaggtt
//
LOCUS       KCLA01000536             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8681upu ultra-conserved element locus uce-5734,
            sequence.
ACCESSION   KCLA01000536
VERSION     KCLA01000536.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8681upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-5734"
BASE COUNT          193 a          134 c          114 g          176 t
ORIGIN      
        1 gatgatgatt tcttcagctt tagcagggtt gtagctctac agagaacagc taacactgcc
       61 agttgttctc ctatgccttg tggccacagc tgtcccctcc atccagcaca ctgctaccct
      121 gccgcagcag aggcaaagaa gagaaattgg aattcaagcc ctgtctgaaa agtaaaaggg
      181 acaaattagt ttcttgtcac tgcactgcaa taaatacatt gtcattttta caccccagtg
      241 aatcatattc tccatttccc ccgtaactat tatacagtct gctggccatc catcattttt
      301 tggtaatttt attttcacca attgttttat gaaatttttg agctttatgg acactaaaac
      361 aaatctagcc tgcgagtatt atagcccttt aaatcaccag caggaaatct caaggttcct
      421 ctagactgtg agagaaggag gctttaggaa agaaagattg ctccgagctt ataaactgag
      481 caaaaatcca gagataagtt tgtaaaaggg acatagatca tcactggcaa aaaccggggc
      541 ataaaacaac atctctctgc tcagctccct taagagtaaa aatggatttt tatttagcag
      601 aaacactaaa ttagttg
//
LOCUS       KCLA01000537             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8697upu ultra-conserved element locus uce-4248,
            sequence.
ACCESSION   KCLA01000537
VERSION     KCLA01000537.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-4248"
BASE COUNT          261 a          128 c          135 g          270 t
ORIGIN      
        1 ttctccaatt cactgaatat ttctgttttg gtttgaattt tgatttcaaa tgaataataa
       61 ctaaaaccca caattttcat tactgttaca ttcctgaagt gttgagagtg gagaattaaa
      121 ggcttctgtg gaaaggtgca caaatatcta cctacagtat gtggagcagt agttactcaa
      181 acatatgcaa gcctgttaaa tgtagccaca ttgtaaatac attattcctg ggacaagaag
      241 ctggcagagt acggaaaagc tttagtggtt atattagtaa acctgacaga cttgagaaag
      301 gagttttgta tccttagaac cgtagctgcc agaatttaat gtcaacgatt aaaatttatt
      361 ttgatcctta cctagtgttt attactgttt gtatacacaa cagaccttac taatacagag
      421 atgcactatt agatggaatt accatctgtt cggagtgaaa tgctggcatc tgtcttcgaa
      481 tctaaaacta aaatgatatt atttcaaaca aaacaaaatt aactgctctt tacttaccaa
      541 cttcattttt gtgtacatgt gtgtgcataa acacatggga aaggcttgtt tgtaatgacc
      601 tgtgtagcaa catctatatt tagatatatg acttcaacgt aagctgtatg gaccatctgt
      661 ctttattggt cttttttgtg ccctctgcta cacaatggaa tgcagcaatc atggactttt
      721 aaatactgtt ttagcttgat aatatattaa atatgtatta tatagcaaga cattaaaact
      781 acataattaa aata
//
LOCUS       KCLA01000538            1070 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8712upu ultra-conserved element locus uce-4592,
            sequence.
ACCESSION   KCLA01000538
VERSION     KCLA01000538.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1070
                     /note="ultra-conserved element locus uce-4592"
BASE COUNT          325 a          197 c          245 g          303 t
ORIGIN      
        1 gactgagccc cacagtcaca ggctgctggg gagaacctct ttgtctaagc tttgttttaa
       61 tactgtgtag aatcctagta tttcattttg catttgcatt ggcttaatgg tcagtgccac
      121 gacctacctt gagcctttga atggaaattt tcattcgggt ctttgggatg gggtagaggg
      181 aaagaagacc tgacttctat tttaaagaga gggaagaaca gggggttctg ggcactgtat
      241 aaatacgcta ttcagtatga ggttgtacga gctgcacaga ctccattaag gaaaggccac
      301 agatagacat cagaatgctt acagagcctg tgcattatat cagctctact aaaatgaaaa
      361 tatacagtac aaacaaaaga tctacagctt tgtgaagaga ttgggagaaa aaggaggggg
      421 agcaactgaa tgttgggctt tgcaaatgca tgcaacagaa aatcttttct tccctctagc
      481 cattgttcta ttgtctttca aaggccatta aaatgaacag caggttgtga tgaaaatttc
      541 attaagccct agttaagtca ttatgagagt gccatattca tgtctctgct tactccccat
      601 ccaggaaaaa atgaatagga aagggttggg gtttttttcc ccttctcctt aaaagcaaac
      661 taacaaaagt tcagaagtta ggagagaatg ggaaatggga cgtgaaacaa aaggaggcca
      721 gagaggtgag ctggctagga agaaaattag acttgcataa gagcattgaa aggtggtgag
      781 ggacaaatgc atcattttga caagtctccc tcccccttcc cttcagccaa catgattgtt
      841 tttagagtgg ctaattagaa aatatatatt tctgggtgca gatggcaaga ctgttcttag
      901 aaatcctcca caaatacgag tcctttttcc tggaagtact gcgagcacaa tgtcttctct
      961 gtttgaactc ccccagaaaa gctacttatt gtcatgtctt cttcatgtag tgctcaagta
     1021 aagttgtcaa tcatcactag ttggcggtca ggtaattagc atattaatga
//
LOCUS       KCLA01000539             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8728upu ultra-conserved element locus uce-5953,
            sequence.
ACCESSION   KCLA01000539
VERSION     KCLA01000539.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8728upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-5953"
BASE COUNT          169 a           62 c           78 g          132 t
ORIGIN      
        1 gaaatttgag cacaatcaat ttcagttatt aggaaatttg aattcaaatg gaaaacactg
       61 ggaatttcct tactttacag aaaaataaac cattgccttc taatgggttc aaaataaacg
      121 gaagctttca tattaaaaat agcaaaagag agagagagag aaacagtaat gacagttttg
      181 aagtatccag tacctgttgt gacaggaata acaaattaat tgggactata acggattctt
      241 tgtaaaggtg aagtaaacac acttgactgt atatttttca ccatcagtta agtctcaatt
      301 ggttctaaaa ataaacagaa gacattgaac agttttaatg gattttgaca cctaggtatt
      361 atgctgtcac tccagtataa atgaatcata actttagact gcaccaagga attactacat
      421 atttggagaa aatttatggt g
//
LOCUS       KCLA01000540             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8744upu ultra-conserved element locus uce-4999,
            sequence.
ACCESSION   KCLA01000540
VERSION     KCLA01000540.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8744upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-4999"
BASE COUNT          235 a          152 c          208 g          238 t
ORIGIN      
        1 tttatatgtg ctttaaatat ttatgaatgt gtcttccaag aaagcactgg tctctgtgac
       61 ttcaaatcta gctttatggc tgaagtaaat gctatcacgt tatttatact gattacacga
      121 aagccgagcg gagcaatagc gctgagtgtc ctgccaaggg ctgaccatgc cagtgctgtt
      181 tatgggggcc agagcacctc tgcagaagca gtgcagcagg ggaatgcagc accgtgtttg
      241 gccatgcgat ggcagaagaa tgttttatga gttcctcttt catgttaatt ctaacgttat
      301 gatgtttctg tgtctagttc tgcctttcag gaagcagaca tagtaagctc taaggacagt
      361 ggtcatggag acagtgagca aggagacagt gatcatgatg ccactaatcg aggtcaatcc
      421 tccggtaagt ctgataagag aatggaaata gcagatcttt aagtaagcag actagaaaga
      481 acagttactt ataggaactt aatacaagag tggcataaag agtgtgtgga ggctgccttt
      541 aagttagctg gctactacag ttacttgggc aaagaggtaa tttaaaaacc ctttcattca
      601 tgaggcagag ttaattccgt tcatttgggg gttggattgg tatgttactc tgcatcattt
      661 ctgtagcaaa gcttcctgca cgttaaacca aagttcctag tacatttttt ttttccaagg
      721 gaagacttgt acaatttcag agcaccgaca attttgttta gcaggcactt cagctgacat
      781 ggcagtgcga agtgcagggg gagttcccaa gggaaagaat gaacccagtg gtt
//
LOCUS       KCLA01000541            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8760upu ultra-conserved element locus uce-5570,
            sequence.
ACCESSION   KCLA01000541
VERSION     KCLA01000541.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8760upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-5570"
BASE COUNT          288 a          237 c          210 g          268 t
ORIGIN      
        1 aaatagcagc agtattttat ttatccctgt aagcttggcc agtatatttt gcactgaagg
       61 agcagattta ccatgaggag gaagatgctg cttccatctc ttttaacatt gcccaacacc
      121 aggatgtgag ccctgccctt ccaagccaga tgtgactgtg tggccacatc tcctgcagaa
      181 acactgagta gggttagaga cactataaac tctcccgctc cagttcacag tcctgaatct
      241 gtgcctcctc tcctccaaaa cctgggaacc aaacatcagt cggttccatc acacctcctt
      301 gaccttccaa attgtgcagt caccaggctt ctgcacgtct gtgatgtagc agaaagcaag
      361 gggttaggag tgggaaaatg cacagaccaa atcctccatc tccagcccaa aataacaaca
      421 cagggggcag gggaaggaag aaggagtgtg gtgcacacag caatacaaaa agtagttttg
      481 tgccaggctc atcagtgtgg cagggtaata aggtcaatgt gaaaacaact ggaaggcaca
      541 ttccccagta aacatgtgct gagtgaaaac ggcccgacct tatgttgtag aatccaaacc
      601 cattgagtca attgccagaa aacatgacat gacctttcag attcagtgag catcagttcc
      661 aagagcaggc tgccgtgctc ttttccattt cactgctgcc cccggagggc ctcaagtcac
      721 ctgaaataat agcttgggct caaaatctgc actcctttaa tgaaaaaaaa aatgcacatg
      781 gcatcaagtt tgaccctggt ggcagatttt ttatatgctt agctcgattt ctttaaactt
      841 aacaactgtg cttattttat tatttatttt atattttaaa gtcttcccag ctctctggtt
      901 tttctacgga cacaacattt ttggcaatgg agaaaacctc ttctttttgt gaatgaggaa
      961 ataattaata gctaatgagg ggctcgttcc aatccacagc ctt
//
LOCUS       KCLA01000542             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8776upu ultra-conserved element locus uce-3215,
            sequence.
ACCESSION   KCLA01000542
VERSION     KCLA01000542.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8776upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-3215"
BASE COUNT          224 a          145 c          198 g          289 t
ORIGIN      
        1 atctattatt taatttttaa ttatttatcc taagtggaaa atggaattcc ggaatgttat
       61 cccgagagcg tgttctgaag gagcagcagt ttttcagggc accctgtgct gtgtgctggg
      121 gtcagggaaa gcacccaggg atcttcaagt acacaatcta aattaagatt ctaaacaggc
      181 attacagatg ctggtaactt tggcaattat cattttgttt ggtgaacagt agtaaaacag
      241 tgtgcggtaa aagtgtttag agagagagga taaataaatt gaacagtttt gcaatgcaaa
      301 gtggtttgtg gtgtttttga ggatttcttg gctcttgctt aactgctatt gtgaagcctg
      361 gagcagattt tcccattgct aatgccctag aagtattaat tcactttgat atgctaatta
      421 gagggcatta tgcaagaaat gagattaagt ggcagcatga agccatttgc ctgtcagtaa
      481 attgagagct ttagcatcag gaggagcttt gttttttctg agtttctctt ggttttgcat
      541 ataaataaaa ttgattgaaa ggtctagaga agcttctaga acattggtgg ttctttttct
      601 ccttctatga ttatttaaac ttcatgttaa agcctttctc tgaatattaa ttgatctaat
      661 gggagatggt gaacatgaag aatttcattg tgctctcagt tactgtatct taacaaaagg
      721 gaagtattgc cattctttgt gtcatctggg ctttgcgggg tgatttcaga cacatctctc
      781 ggctctgtgt tccagcctcc ctgcctgctc acggctcccg agcgctcggt gatacctgcc
      841 tgcaggcagt tttgcc
//
LOCUS       KCLA01000543             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8792upu ultra-conserved element locus uce-6352,
            sequence.
ACCESSION   KCLA01000543
VERSION     KCLA01000543.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8792upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-6352"
BASE COUNT          186 a           91 c           99 g          181 t
ORIGIN      
        1 taggcattta ccttaggaat agaaaagtat tctttctgta gtgtagaatt taacagaact
       61 atgaactggt ggtttcacaa ggcatcagtc acacttacac aacatttgct gatataaata
      121 taaaagcttc gtttgaaagg ataaataaag cagcactatt atctaaacag ggtaaaattt
      181 aacatccttg tggtttgtgg aaatttttga tgtgcctgct ggcttttcaa taaaaatcaa
      241 ttatgcctta aatgcgagcg gtagtcaaca tactacagac tataaattca atttcatact
      301 cagaaatatg gattagctga acttgatgcc cttccattga tttcagaaag caaaagctga
      361 taaggtaaat aatagtaaga agctctctga cactccacat caagttccgg atttccatat
      421 tatttttgta agaactttcc aggcaccaca atatcctcct tgtgaaatat gtatgatgaa
      481 tagatattat atggattgct gattcatctc tatttacgga atggatattt cgcttttata
      541 atgcaaggtg ggagctg
//
LOCUS       KCLA01000544             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8808upu ultra-conserved element locus uce-7104,
            sequence.
ACCESSION   KCLA01000544
VERSION     KCLA01000544.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8808upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-7104"
BASE COUNT          255 a          159 c          166 g          251 t
ORIGIN      
        1 ggaagaagca tcgtgcacaa atatgtgaac ggattagcaa agacatctgc aagtctctat
       61 aaaccgctgg tgattataca gctgcatgtt catggcttta aagttccctt atcagaactt
      121 gcgagatgat tttgatgatg cagaaatcaa tgaaatattt acgcggagga agatttcgct
      181 tctgcatctg cagacttcaa aaccgaagga acacgtggaa cgcgattctg ttttccaaag
      241 ttagtaacga cgcggttttc cacaaggccc ttggtagatg caaataatta ccttcttttt
      301 ttcttcttga tacaatttca tgatttgcat tgctaccagt ggttccccaa taaaggcgaa
      361 catcacatta ggattcatga cagttttcac attgtattat caatatgtgg aaataattgt
      421 ctgctccagg attaaattac attattgtgt atctttttca tgcctaataa ataatgatgg
      481 atggcttcta ttttcatcac cacctgcaac catttagtca cctcttgatt gttgaagata
      541 aaataataaa aggcaagtgt tatgttgcaa gcaaaagaat gcagtcaaaa cagttgcatg
      601 cctcacgttg ctgcctacct ttcctgagtc cctcaagagt aatagatgct gttctgggaa
      661 ggctagcaac ctgaaaactg gtaaacagtt cccataaacc gggcaaggcg gggaaatgtg
      721 gaaaactatt tttcctcgta aaacaataat tatttctcag tgcttgatgc ataatctgaa
      781 aatgagggtt ttttgctgcg gcacaaagca gttacatgcg attagaatgc a
//
LOCUS       KCLA01000545             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8824upu ultra-conserved element locus uce-3417,
            sequence.
ACCESSION   KCLA01000545
VERSION     KCLA01000545.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8824upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-3417"
BASE COUNT          178 a           98 c          111 g          190 t
ORIGIN      
        1 tgtgctgaat cttttgttta atctttcctc acttaactgc aaaggattcc atttctataa
       61 aaagtacccc tgtttgttat ttttattggt agcttacaga gctaggaaag tgctttaaat
      121 aatgcactat aacagtgcaa gagttttgta ataaagtcaa gggagatatt tctgctggga
      181 ttctgcattt ggtgggcctt gtagttaaag acctggaaga ggaagggtta gctacaattt
      241 gagtgagtct attatggctt agtgatttgc tgattgattt catttgctgt cagttaaggc
      301 tctctttatg tcagctttct ttgcttaatg ccttgaaata aagactgatg aagttttttg
      361 gattgatacc acttgcataa actgaccctg atttgccctt ctccatgaca atataagtga
      421 cagcacttag atgaaaatac agcaatgaat atgcaacttt aggattaaga aaaacacagt
      481 aaacctttca gaatataaaa ctaggcataa aaccccagac tgttctattc agtcaacagt
      541 tatcatacac tgaagaaaca gactagggta gcatccc
//
LOCUS       KCLA01000546             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8839upu ultra-conserved element locus uce-778,
            sequence.
ACCESSION   KCLA01000546
VERSION     KCLA01000546.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8839upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-778"
BASE COUNT          240 a          149 c          126 g          236 t
ORIGIN      
        1 attcagtaga actcaaaact tgagaaaata ttatctctgt atgtcacagc cgagaactta
       61 ttttctgtgt tttcaataag ccagcaatat ttgcagttca ccctctgcaa tgcaacctat
      121 tgttttgcct gcttactggt ttgcagacaa acatactcac atgataatta tttgcaccaa
      181 attcagcatg gtggctctga gaaaaagcac attttacttt taatttctgg acatcttttg
      241 atgagccacc cagtactgac tcagcagtgc tggaccttca cttggggccc agaactctgc
      301 agctgctcta gctctgcatt tgcctagagc aatgtgccag ctgtctctga ctgtattaca
      361 ccatagtaat gcgaacaact ggaagcaata atgtgtctcc ccatttgcct aacaatacca
      421 acatgaacaa taattcagaa gactgaagat ttgtgctgta atttaataaa ccccatgcac
      481 atttctacaa ttgagtatca catctgtgca atggatccta gaagtgtaat attcttttat
      541 aagggaccat taaccaatct taagtttata ggtttcctta aatctttttc atcagctgtt
      601 aaactacagt aaagagaaaa ttgcctctta tgagacaagg gatagtaaaa tacaaagact
      661 gtgattaaac gtcaatcaat taaggattat aatataataa aagtgctgac tgatgtttaa
      721 aatgagtact ttctagctga attttataag c
//
LOCUS       KCLA01000547             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8853upu ultra-conserved element locus uce-5068,
            sequence.
ACCESSION   KCLA01000547
VERSION     KCLA01000547.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8853upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5068"
BASE COUNT          199 a          161 c          162 g          263 t
ORIGIN      
        1 tgggtgttat cagtcacaga aaggcagatt ctttttctgc tgatgctata gaaattaatt
       61 actgtctctt tctcttgggg gtattgcaga gggcaatatg ctcacatatg tttatagagc
      121 ctaacttgct ttaacagctt cagtattgtt ttgtttcttt cccatttggt ttacaaagcc
      181 ttctgttttt cccagtttag acacaattgt tcgaaacttt tctccagtgc agttaagagg
      241 taagtgccag gatttagcat gtgtaacatt gtctgaggca tttgttcagc tgtctgttga
      301 atcccctgaa actaatgctc agtctctatt aatgtctcag tccctagaaa ccagagccta
      361 ttctttccta taattaatct tgcaggtact gccttgacat tattggttca ccagcagagc
      421 agaactgcct tagccatcaa taataattcc acacattagg acgaggccta catacgtagc
      481 ccacagatgt agctgggtcg tgtgcagact ccagcactcc ttactggctg gggaaacaag
      541 gaaaaagaaa ccctccgcaa ttgaaactgt tttgggcgct ggataatttt gcaatacaag
      601 ggttgtggtg ttactcatgc tctgcttttt tctcccagtg taggcactct ttggcacaat
      661 gcttatgatt gtctgtttac tgaatcttaa tactaaagct gttacaaatt gtctttcaca
      721 gatggtggga gcttctcaga tcaggagagg cagggaattt attactcaat atttctgtat
      781 tactg
//
LOCUS       KCLA01000548             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8867upu ultra-conserved element locus uce-7965,
            sequence.
ACCESSION   KCLA01000548
VERSION     KCLA01000548.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8867upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-7965"
BASE COUNT          270 a          238 c          144 g          244 t
ORIGIN      
        1 aaaacattga tactacgtat agatttgcca cttggctcct gtgtgtgtct catacgtacc
       61 catccgaccg tgtctatgtt ccgtgctttt ctgttcgtga agtgtgagat gttacatgta
      121 atggttttta acaagacaaa aaagaccttt taaattaaaa aagccttcct acttactcac
      181 tgccaaacta tcaacttgca tggttttaca tttgcattac aattaacatg gcttgtcttt
      241 tactagggat gtaccacacg agtggcttta accagtactc cccatcagtt ctttgatggc
      301 tttaaacctg atgtgtttta atattgcagt cggtacagac attccaaacg cacataactg
      361 agccactcgt ttctgcatat aacatccaga gactctggac tccagctgcc tgcactgccc
      421 taaccatacg ctacatttct caccaagcac tctaacacgg tgctgccctc tccccgtgcc
      481 gcccctgatg cctctttcct tttctccccc cagatccgcg tcgtgaaggc attccgtagc
      541 tctctctatg aaggtttaga aaaaccagaa tctagaacct ctattcacaa ctttatgact
      601 catcctgaat ttaggataga agattcccag ccccacatcc cactcattga tgacacagac
      661 ctagaagaag accctgctct caagaaaaac tcgagtccac cgtcttcgct gaacaagaac
      721 aacagtgcta tcgacagtgg aataaatctt acaactgata caagtaaatc agctacctct
      781 tctagtccag gaagcccaat acatagcctg gagacatcac tttagctgaa aaggtcactg
      841 caaaaaaaaa aaaccaaaca aaacccacag caaccaagat atataaatat atatta
//
LOCUS       KCLA01000549            1014 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8883upu ultra-conserved element locus uce-1311,
            sequence.
ACCESSION   KCLA01000549
VERSION     KCLA01000549.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8883upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1014
                     /note="ultra-conserved element locus uce-1311"
BASE COUNT          301 a          236 c          219 g          258 t
ORIGIN      
        1 acttgtcttt gcctctaaca ctgaaatgaa taaatatcag tgtcaactgg caaacaatga
       61 acagttaaaa acaaaaccaa aagaaagaga ctcaaaacaa accccctagc cctatcactt
      121 cctccagctg gaaagagctc agcacaaaca ctgctcgttt gttgccctgt ggaaaggtaa
      181 ccgatggaca gcaaacagac ccgaactcag cccgagagga gcgaacacag attcaggacg
      241 cttacacgga gctcatagcc accccgtgat gttccgctgc tcagcatccc tctcccccta
      301 ccccgagcac cggaggcgga cgctgcgttc ctccccgcgt ttttcggtca gggaatcttg
      361 gcacaagcag cacaaacaaa ctttgctaac agctttcaac ttggaagggc cgctttttaa
      421 atatttgccg ctacataatt gaaacagctg ttttaatgag atacctactg tcatcatttt
      481 accctggctg agctgggtga caacaaagca gtaataacga attcaataat aattaactcg
      541 ggtcatctgc tcatctgtca tggctcatca gctttaggga gaaaaatccc agtgaacttc
      601 tctcttttgt gagctttcca aaactctgca ataaaatgct tagagaggac tctaggtagc
      661 ccttcaaaag ttctaagcaa actggtaagt aggttaatta aattttatgc atgtttaaat
      721 gctaatgatt acattcctaa cattacagtg taatctgtta tggaatgatg tcatgcaagc
      781 agtggttttt agtgcctaac acatttccat cctgatgtgg agtagctctg gatcatttat
      841 cggagggcag gaagttgaca gtggtggttc agagccaggt ttcacattta gatcctctcc
      901 gtgtctggtg aatgttaagc aggggagctg cagaaagcca ctggttttgt gcctcctgcc
      961 gcatcgcaga gggggctgca caataaataa ataaataaaa taagcgaggg agga
//
LOCUS       KCLA01000550            1102 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8899upu ultra-conserved element locus uce-3334,
            sequence.
ACCESSION   KCLA01000550
VERSION     KCLA01000550.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8899upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1102
                     /note="ultra-conserved element locus uce-3334"
BASE COUNT          289 a          245 c          212 g          356 t
ORIGIN      
        1 attatctctt caatcagagg ttaaaaagga ttcgctgctg acttcatcca atagttgaca
       61 gctgtcaata caagggtttg atttctctat ccagcgatca cgaccactgc cttaatatca
      121 tcagcaaaag atcttgactg cgagctgcag ttgcactgcc ccaactcaat tactgcattc
      181 ttgaactgca atgtattcat ttgtgggcag tggggcagcc agtgggaggg tattgattgg
      241 agtataatgt catgtgtagc agctagagta agatgaaaag tgttttctgc ttaatgggct
      301 ggtattaagt aggtgggaat ggcttctaat tagccaacaa ttgccgtgtt tctcagtttc
      361 cctcctttcc ctcctcctgt cggtcacccg ctgccaatct ctccttttcc ctttttgtgt
      421 ggagttcatt gctcactgca gtgaaagcct ttgtttaaaa aagagggctc ctagggtctc
      481 atctgccagg gtacagcttg ctgcctgcga tgagtagcaa ctgtcagttt attttatctc
      541 aatcttttca tcattctgct gaaactggtc gagtgaaacc acctgagaga cctgaggatt
      601 cagtacctac aagtcattag ccaggactgc tcagtctctc cccacacagc aagtcaactg
      661 aacactgctt aaaatatagt ccactttaac cctgtgtttt cctctggatg tattaaaact
      721 cttgctgcat cttccaaatt ttagtttcat ggtcattcct taaactcatc gtagttgcag
      781 tgtgtttaac atctttttca gtgcttctca acacaaatgc tcaagcaata ctctcagaaa
      841 tacaaaatag aacatactaa aatctattta ctacagtata ttcagttgga acctttctct
      901 tatctctgct atgttccctg gcatgaatat catagctagc aagttttatt tgaacctctg
      961 cttacctggc agcttttgta aatgaaactc acgttaaagg gataaattct gctcagttac
     1021 acttgtgcaa cccaaatcaa gattttatgg gcataataaa gcacagtgta tggcctagag
     1081 gttttagtat gtttcaacgt gt
//
LOCUS       KCLA01000551            1124 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8913upu ultra-conserved element locus uce-2782,
            sequence.
ACCESSION   KCLA01000551
VERSION     KCLA01000551.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8913upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1124
                     /note="ultra-conserved element locus uce-2782"
BASE COUNT          316 a          190 c          254 g          364 t
ORIGIN      
        1 aaaaggaagc cagtgttttt gaagtctctt catagagatg cttgattatg ttctgggagg
       61 cacatgggtg ctgctgctgc atccttttct ggttaaaact ttgtattctc cctcaataga
      121 cttgacatac ttggttttat ttgtggccaa aggtggatgg aatcagggcc aggcagagtt
      181 agccaggaac taatgtggtg tacaagtgat gcttctttgt tttgtgtgct gtttgttgat
      241 gttccctagg taccaaaaga aaattacaga ggtagacttc tactgttatt gtctcagtga
      301 taggtcatat ctccaaacaa actgtatgag gaaggttatg ttttggaata acatcctgtg
      361 gttttgtgct taaccgcttt tcattgatgg tctgaagttg cattgtatta gcgcaaagta
      421 ttttacagag ttaaatgata ttccaggttt gtccagggga aaatctacag ctccccacaa
      481 catgcttgac aagttattat atttacttta gtcaaagccc gagtgtgcag tatccctctt
      541 ggaggtggtc tattattgga gtcccatatg ctttttgttt gggaagaaag cagtcactgt
      601 gtcatactgt tacacagggt attctttttc aaggatgttg ttcccttggg gaccatatca
      661 tgccagagtt cctaagtcta ataagacctt tgtagctctt attgtgttaa agttctggga
      721 gggaagcaag agttaaacag aaaatgtaat tcaagcaact atactagacc acatgttgaa
      781 aaacatgact gttaaagcag aaaggcaaag gcttcaaaaa gattcctgtt gtggtaattt
      841 aactttatgt ttcttcccaa tgattcttga atggaaagac agagggtgat ctttgtggag
      901 tatctgcttt tacttaacag taattaaaaa tatatcaaca gctctgtatc cttgaaaact
      961 gtatcacaaa gcttcaaaag cagccttaaa gatttttaac ttgaagggaa tgacgaaggc
     1021 tgtgaggggt atcctgccat cagagaatgg caggacactg attttgtata aatgcacaga
     1081 gagagggaac ttcttccttt tgtggcagat gttgcccaac ttcc
//
LOCUS       KCLA01000552             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8927upu ultra-conserved element locus uce-18,
            sequence.
ACCESSION   KCLA01000552
VERSION     KCLA01000552.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8927upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-18"
BASE COUNT          148 a          112 c          113 g          195 t
ORIGIN      
        1 aaaaaaggca cttttttgat accaggtcca aagtaaatat ttctgcttca tccagatctg
       61 tgggcctctg ccaaagcctg ggtttcggga aagttagttg gtgtctcagc tttacataat
      121 tgaaagtcat tctgatttct gcagtgtggt gtaattgctt aaaaaaacat gttatttgat
      181 gattaagatt ctggagtgaa ttgtgttctt tcgggttctt gcactgtttc tccatcaggg
      241 acttggtttc agcggtgtgc agctgctgga gttgatttac agtgctgcgg ctgtggctag
      301 tcataaataa atcctcttat atagttgtta tgaacacctg ttagatcatc tgtcagcaaa
      361 gcgctgttca catttatcat ggtgcagtag ttattttacc tcaatccatt tccaactgac
      421 tcggcctcca tcactggatt actattacca caccataatc gctcgtttcc actccatgtt
      481 acaacttgca gataaaagat ttcactactt ggccaaattt cataaataaa ggagcagttc
      541 agtgcagtaa aagtttattt ttgtcatc
//
LOCUS       KCLA01000553             286 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8941upu ultra-conserved element locus uce-645,
            sequence.
ACCESSION   KCLA01000553
VERSION     KCLA01000553.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>286
                     /note="ultra-conserved element locus uce-645"
BASE COUNT          100 a           59 c           44 g           83 t
ORIGIN      
        1 tgagggaaca agagatgcta tctgccacaa ggattaccac tctgcactcg gatcaaagac
       61 aattctacat tttaccctag tgattagctg taattaaata aagtaagtct gtttaaactt
      121 cattagcagc aaaacgtttg ctacagcaga gtgggcacaa atcatccatt cttaattaaa
      181 agataatcca caggatgacc ataatcttct tctaaaaata caccgttcct ccctgaaaga
      241 tttcttcatc aaataaggat aaataacagt ttctctgtgt ttaagc
//
LOCUS       KCLA01000554             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8957upu ultra-conserved element locus uce-6500,
            sequence.
ACCESSION   KCLA01000554
VERSION     KCLA01000554.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8957upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-6500"
BASE COUNT          173 a          173 c          165 g          216 t
ORIGIN      
        1 gggggggggg gaaggagcga attatttgtt tttacctagt gcacaaaatg gaatccctcc
       61 gtctctccct gctaattcgt gtttcaattg tacccagctg tttaaattgc actgtgcaga
      121 gattgccttg atccccaggt gctggtactc catctgtgct gctctgagag actatttaca
      181 gcagaggtta ggccagcgat tgctgggatg gaaaactcat ttctcagtct ggcttttatt
      241 tacactctta ttaaagatcc tttcactcat gttggaatgg cagctagtgg ctgcagcgag
      301 tgcttggcac cgagccaagc ggcgaaatta ccatgtcgat gaaagatagc ctgcttccat
      361 tttaaccttt cactgttctc ccctttccat ctatatttgc atgaagaagg atgattattg
      421 aaagagatag ggggacaaag ggacgagaga atccttgtca gccgagcttt tcaagggatt
      481 aaaccaatgg tttgtgacca atttggaaaa atctttactg ccttactaat ttcctactcc
      541 ttccccctaa ttgctattag agtttatttt cacatgaagc aacagagctg ctcgtgccct
      601 gctcatgtcc ttcccccact gcttccctgc acttggtgaa cccaagtctg ggatatgtct
      661 gcaatgttga ggttgctact tcattcctga tgcaggtcgc acagagccac ggcaacaccc
      721 ttgaagc
//
LOCUS       KCLA01000555             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8973upu ultra-conserved element locus uce-7751,
            sequence.
ACCESSION   KCLA01000555
VERSION     KCLA01000555.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8973upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-7751"
BASE COUNT          162 a          142 c          139 g          177 t
ORIGIN      
        1 atatctagcc ttgtgtttga atttctactc tcagcaatgc catcttttaa aaaaccacct
       61 gcagtctgat actgtcatag gctttttctg gcttgcactt ggactgggaa tgataatgat
      121 gcacacttaa aaagcagagc cctggtactg gtctggtagc tttgtctggt gcttggttac
      181 tgcagaaatg gtgatggggt tatttatgtt aattcatttg ccttcttggg gaaaacatgc
      241 ccacactcct ctacttaatg ggattcttcc ctcgttgcag tgcaaacggc tggagcagga
      301 gcttcatcat ctgaaagagc agaaccagac ttcagcaaac aacatgagac atctgactgc
      361 tgaaaacaat caagaacgtg ctctgaaggt aaatctccat ttcttcttgc aggcaaatta
      421 aggttgtaag cccctggtgc cagctttctg ggctgcatat atcacttgtg tacacttcgg
      481 cagaagtgag ctatggtgtt tgccaacaac cccttcttta aacacagaga cagcaccctt
      541 ctgctatgct tgtgttttgt ggaggaaaac aaggtagggg ggagacatga ccccccaacc
      601 ccaaaatcct gacgtatgct
//
LOCUS       KCLA01000556             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 8989upu ultra-conserved element locus uce-976,
            sequence.
ACCESSION   KCLA01000556
VERSION     KCLA01000556.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="8989upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-976"
BASE COUNT          254 a          155 c          177 g          337 t
ORIGIN      
        1 agaaagggaa ataattattt acggtctggg tggtgatgag cgaacaaatg ggttttgcac
       61 tgagtgtgtg ttttctgtgc tttttctggg gtttgttttg gcaattcata ggcaccatta
      121 tgatatgaaa aggagcagat gtatggcagt cggcagtttt ctaaaggaaa tatttattgc
      181 tttctggttt gcatctgttt aatcactaaa atcttgcctg ttttcaacaa ttatttgtat
      241 tcaaatattt taccagagaa acaattgcct tttctggctt gactctgttc aaagctctgt
      301 caggtgtaag ttatagctgg ttccctttca gtttaaaaaa tgtataaatt ctctttttaa
      361 tgttccaggg aaaagcaatg gtatttgctc cactccgagg gaatacttta aaccagtttt
      421 gcaatctagc tgagaaagct ggtttctcta tccaaagaca cgaaaattat gatgaacgca
      481 tttcaaactt ccactccaag gttagttttc tgcttgtgtt agataacact ttaatccgca
      541 ttgcattttg aagagatcat ggtccttttg gcaggtaacc taaatgtttg attaaagtac
      601 tccttaggtg tgctgtttct gaacagctat ttttgtatct gattattttg tgtggtagaa
      661 ccattcttta tctctgcacg tctagaagag ttttgcagaa gcatctcctg tttacccttt
      721 tcattcatag aaatctaatt tatgagagtc ttttcttgtt gttgttcgcc gctgacaaat
      781 gcacagcaca ccagcattta cattttaata aaaagcaatt tttaagtagg ttaaatactg
      841 aaaagggccg aataaaatac gaggtgaatg tctaattgta tcatatcata ccttaaatcc
      901 ttatctctgt ctgctttatg gct
//
LOCUS       KCLA01000557             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9005upu ultra-conserved element locus uce-225,
            sequence.
ACCESSION   KCLA01000557
VERSION     KCLA01000557.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9005upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-225"
BASE COUNT          226 a          138 c          118 g          160 t
ORIGIN      
        1 tcattctgaa gcaccagaac ccaaattcca gagctacatc tgtcacaaac ttcctgcgca
       61 tcaactgccc gggaacaaac tggatttact cacttgaccg aggttttctt ggagcacaac
      121 cccatgggaa gaagcagggc ggctaatgga caagaggaag agaccaacag gctgcgtcgc
      181 caacagggct ctctgctttc ttctggcatc tcccaaaaaa gagagctttc aggttggatt
      241 aaattttact attttatttg tgaaaaaact acaagcagaa ttcataaata gacatttcta
      301 tttaaagcag gaaaatgata aagtggcttc taataacagt cgtgcacatg ccagtaacag
      361 gaatatatta acatctttta tttgctagac aaagagcagt gtccaatata aatttcccaa
      421 aaacatttaa gacctgtgaa tttctgacca gttcacaaaa ccaccatcga cactttagca
      481 tgaagattaa aacaaaccca acaggactgt cagctctaaa gactttacag agcggaggag
      541 cttcgagaag cgttatacaa gctgtctttc cgggcaaatg aaaaatatag ctcgtataat
      601 acatcaacat aaaaatccac aagataagat tatgttttga ca
//
LOCUS       KCLA01000558             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9021upu ultra-conserved element locus uce-3306,
            sequence.
ACCESSION   KCLA01000558
VERSION     KCLA01000558.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9021upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-3306"
BASE COUNT          146 a          210 c          172 g          165 t
ORIGIN      
        1 atgagcgaga catcgccctc tgcaaaggga ccaaggcgac tccgctcctc gtacggggtg
       61 gctttgcctt gatgctaatg aagtgcccat ctgcagcctg caccaagtaa tcacgagctg
      121 cctcccctga ctgcgctggc acagcccggc aggacgagcc ccgcgagctg ccggcccgtg
      181 cacaggggcg ctggatgctg ggaggagcgg atcatgttga tcccttcacc acgaggcaca
      241 caacctgctg agcagacagg tgctgcctgt gcccatgtcc atgggcgatg aagcctgctt
      301 gtcctagcag ctgacatcta tatctagagc tatctggagt tttaaactga tacaacatga
      361 agaatgtcac tctctgttac tgtatgcccg tgtctcatgg acatccttta agcacaaagc
      421 cttgaccacg tctgccctgc tctcttcagc tgacggatgc tgctattgtc ctgggctatt
      481 gttttccaca gtctccccca gtttatcctt cggttcaaac gcttctggac atgatagagt
      541 ttgacttcgc ccccagtgct ggaacagctc tattgtttat gcttctgcaa actttaaact
      601 tcagcctagc caacttcagc cactgaaacc aactcgagtc ctgccccaac acacaggggc
      661 tgcaggagga ggctgctgtc ctgaaccctg ctg
//
LOCUS       KCLA01000559            1146 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9036upu ultra-conserved element locus uce-3777,
            sequence.
ACCESSION   KCLA01000559
VERSION     KCLA01000559.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9036upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1146
                     /note="ultra-conserved element locus uce-3777"
BASE COUNT          297 a          255 c          234 g          360 t
ORIGIN      
        1 gtgaggaaat tgtgtgtatg ctcagatagc aactcagatt gcaaattatt caccaagatg
       61 gcttcaggct atttcattta atgttatcag tttgacaaga gattgctaaa ctacatccat
      121 actttactca aagtctgcaa aaatgtgaag atgtttgtgg gcattaggat gtaggagagc
      181 acttacctcg agtaatttag gacaaatcac ccctggtaag aggttagttt atcatacaca
      241 tctctactca tctacagttg ccattgctta agtcagcctg cagaacacct ttataaacca
      301 agcctgttcc ttgagactga acagttatta tttttttgag tcatatacct gaaaggaatg
      361 caggatttct ctctgcacag gtgctgatac attactactg tgccagcttt cttttctttt
      421 ctgaacttct gcttcacttt atcatgcctg ctgtaacatt tcattcctag acttcaaaga
      481 ccaggccgat aacagaaaat gccttgcatg ttttgtattt gcacgtaaca gacttgctta
      541 tgtcacacca gacatcatta tgcccatctt tcttagctgc ttctctgctg gttctgcagg
      601 gtcatcccca acatcatctc agaatgccac gctgccttca tcgagtgcct ggccgcttag
      661 tgcctccggc tacagtagct ctttcagcag cattgcatcc gcacctagca ttgcaggtac
      721 gaaaaacggc ctttttactt tcacatccct ctgcattcac agagaaggcc ctagaaagtt
      781 ctttctggtt actaccagtg gtgctactat agacagaagc atatattgtg gttgggtgtt
      841 gggtaggccg ctctcctggc agcccctcag tgctgagcat tggacgtatg cctggaattg
      901 tgctgaggaa aaatgggttt gttccacttg gtgccgtgtg ctatcactct ctgttggtat
      961 caagagcttt taatgactat tttcattgca actccgagga tgctgtatag catctcagaa
     1021 acacctctaa taagagctga tacaaaataa taaattctaa aaagtgaact ggctgtagct
     1081 gaggaaaaca tttggtggta cttcaagtct ggagggttgt cttgggactc ttaaatctct
     1141 tttaat
//
LOCUS       KCLA01000560             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9051upu ultra-conserved element locus uce-7712,
            sequence.
ACCESSION   KCLA01000560
VERSION     KCLA01000560.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9051upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-7712"
BASE COUNT          165 a           79 c           65 g          172 t
ORIGIN      
        1 caacaatatt aaacattcta gttttaaaac acaagtatcc tcatctttga aaatacaaaa
       61 atagtaaatt gaagaagcta ttcaaaattg tcttttaata aaagtttaaa gtcttcaaaa
      121 tatatttgcc cctcgagcaa acttttttca tttaatattg tgtctgttaa ttagtgcttc
      181 aaatttgcaa attctttatt ggtttatatc aatgtaatac ccaaagctca tctcattgcc
      241 agatttgaat gaaatatgat cctgtttatt ctattaaaat gaaggcttga aattgttacc
      301 caaatgccac aggaattctt gccattttct catcaaattc ctcatcagat tttttgttaa
      361 agtcacattg ttttagattt tgagcattga catttaaatg aagttcagtg tgccccactg
      421 gagaaaacat ctgcagggac gtattatgta tgatataaat tacaatcaac caggagtgca
      481 c
//
LOCUS       KCLA01000561            1084 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9067upu ultra-conserved element locus uce-3024,
            sequence.
ACCESSION   KCLA01000561
VERSION     KCLA01000561.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9067upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1084
                     /note="ultra-conserved element locus uce-3024"
BASE COUNT          327 a          221 c          218 g          318 t
ORIGIN      
        1 aaaatctagt tactaacaca ttactagtac cacttgccac actaatcctg tttgaatcat
       61 taggagtaga atcaactata aggttgtaaa atccttcctt tcagtgttga actaacagct
      121 gcacatttag aaatagaatt gtgttcttga catggagaat ataaagcatt tcataaatca
      181 catgaatttt cccgatacca cgctcatttc ctgtaactat catggcttcc agcaaaatcc
      241 tgtcctagta caataaataa cccaaaaaat taaagtcatt cacgatggcc aaacgaagga
      301 aatagtagga gcgggttaaa gatcagcatt catttttcaa attaaattta aaagtctgca
      361 ctagttactt agaagattgg caagttttac aaataacatc accgagcctt ttagagagaa
      421 acacagccgc attagaatgg agtcattagg caatacattt attttgaagc caattaacct
      481 tttgtcaggg aaatgtcgga gctgtaatgg tttcagcggt ggaggtcagc ctgtaacaga
      541 ggcacgtatg acagcgatta cgctgtctga catatgctgt agacggagag tacagctgtg
      601 gaatgagaat ctgccttcgt ttgtattcta ctctgcattt tcagggagca ggcaatcttg
      661 acctatccat ttaggtaatt aaagcttcta tttagaagtg tcctgcagga aggtgaaatt
      721 tgggggagat aaatggctgc tgctcactgt atccagccac ttccatcact tgatggactg
      781 cctgaaacag gctgcgttgc caggtcctca taaaaataga gatgaattgg gcagcagaca
      841 attctctaag gcaaagcaac tctgtcatct tctttttgca gcatgtaatt taattgttag
      901 ccaaggcaga cagctgactc aggggccttt ctctaatggc ctccccacca tcttccaatt
      961 gctaagaaat catttcggtt tatttgctta caagttgact ttgtttgaca atgagaagtg
     1021 tcacttcaat aagctcagct ggctgtcaca gctgtgccac gacttacctt ccaggcgatt
     1081 ttgt
//
LOCUS       KCLA01000562             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9083upu ultra-conserved element locus uce-3398,
            sequence.
ACCESSION   KCLA01000562
VERSION     KCLA01000562.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9083upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-3398"
BASE COUNT          161 a          117 c          107 g          188 t
ORIGIN      
        1 cacagcaaat gcatatctcc gacagctgac agccccaaat gctccatcca gcacatgagg
       61 ggatgcttgg tcttctaacc tttgcttttc tttctttcag aggataaaag cggtggctgc
      121 ccccaaggaa gtgaatcggt ggtccaaaga aacagagagt ggcacccctt tctgccccaa
      181 tggaacttca aatggtggat tgatcaagcc aactcatatc attgtggaaa ccatgatgtg
      241 agctctctct gtgagaggat aaacctgctt taactgccgt ttactaacca tagattctca
      301 taggaccagg tttacagagc tttatatttg cactaggatt tatttttatt tctcacagag
      361 aaagttattt tttgtgtgtg tttttttttt aatattttgt aaggtaatca cagcagatgc
      421 ctctctgtag agggagagct ttcatatcag actagacata taacaggaat ttactattat
      481 tgggtttttt aaaatatata tatctttatc tctgaatatt atacacctta ccacttgaat
      541 tgatcatctt gccagcaata cattcaagtc tct
//
LOCUS       KCLA01000563             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9099upu ultra-conserved element locus uce-5427,
            sequence.
ACCESSION   KCLA01000563
VERSION     KCLA01000563.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9099upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-5427"
BASE COUNT          271 a          213 c          179 g          217 t
ORIGIN      
        1 tcagatacgg aaataaattc tttatagaaa gggaagtttg tctggatgac ctctgcaaga
       61 cagcgacata ttttctgaaa ctcagttcca attccgtgag ctgacctatt gcacccacaa
      121 aacctattgt tcaccctgag caacaactgc ttccaaagca caaaacccat tccccttacc
      181 ctcaaacaag gccaaaagtc cctagcagcc cagtaaacgg ttggagcctt gacttttgtg
      241 cctcaacgtg gcagtcagac atttttattg cggaacagtg tctggaaaag atgcaaaaca
      301 aaattgctaa actgcagaaa gaagaaaagg gtggtggaac aaaaggcccc cttccctttg
      361 cttattgagt tcaaaggcat aacatgcagc accctgcagc aaatgggaag ctacactaat
      421 tttaaagcca taaaatgcta taaagtgccc tgcggggcag gactacactg aagctagttg
      481 cacctaaata agacatggtt catttacttc gcagcttagc ctaatgtaat catcagcgaa
      541 tttctagcct agagttgtaa caggcaaata gccgatgctg tggaggcaac actcccagcc
      601 attgagggac cttggctaga ttgctgttga ttagaaaatt tttcagtttt gacaagcgct
      661 taatgaacat aaatcgctcc ttgattggtt tccatttggg gccacgggca cacctcagaa
      721 gaaacaaaag tctccaactc ctctttctca ggaaggacct cggtgacaaa cctactatca
      781 ggttatgagc cacagtggaa tatgttcatc aaatggtgct gttaaatcct cccttctcgc
      841 acagaaatgt gggcaggaca ccattcaacc ccctcataca
//
LOCUS       KCLA01000564             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9115upu ultra-conserved element locus uce-6780,
            sequence.
ACCESSION   KCLA01000564
VERSION     KCLA01000564.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9115upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-6780"
BASE COUNT          252 a          141 c          167 g          226 t
ORIGIN      
        1 aaaaataaca gttctcaacc ttcagcactg tcacactgca gtcataaagt ctgccccggg
       61 gcgatgggtt acactggtgg gaagggattc acatggtgcc ctgccagagc ccccacgcta
      121 ccagcgatgt tctttcttcc tgcctctgac ttcaattaat gcacttttaa aatgattaaa
      181 cagatcatgc tgtgacttct aaaatgtcaa caagcttcta aactcgggag acaggaatgt
      241 aataaaatag gtaataggag attcaatagt taataggggc cctgaagtgt gagtgtatac
      301 agtagctgta tattgaaaac tgcaaatgaa gatggcttag tattgcaaac tgaggaagaa
      361 aattgttttt aattagcacc ttcataagaa ctgctgatta atactgtttg gtttggtgaa
      421 aagctttcag ctgagtaatt tgtacagcca ttacaacagt tttgttagag caggactcct
      481 gttgttaaac acaaacagca gatgataatg gtggaagatg agtttgtcat gtaacaattt
      541 accttattga aaaaagctct atataaaacc caatacagta ggtacaggca gaaatcacat
      601 attttaaatc ctttcaagat tgcagtgtgc gatgctggcg tgtttatcca tggacgggaa
      661 acaggtttta tgttatttat aaaattatat atacaattta aaggtgttgc agcacggaca
      721 gaccactttg ctaataatgc tttataacgg ggcaggaaag tgctggcgca ttcagacact
      781 tcccaa
//
LOCUS       KCLA01000565             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9131upu ultra-conserved element locus uce-6069,
            sequence.
ACCESSION   KCLA01000565
VERSION     KCLA01000565.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9131upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-6069"
BASE COUNT          122 a           97 c          112 g          143 t
ORIGIN      
        1 cacccctgtg tctgatgatc catctttgct aaggtctgct acttgttaaa tctgtaagaa
       61 tatctgtcag agatatcctg ctacaccatt tggctgatgt caaacctaaa caaaccagat
      121 cagaaaacca gcaagtggca gaacataaat gaaacgggag aagaccagtc taactgtaac
      181 tcgcatggct tgcttgctga tttttttggg gagggggtga ggagggaaat agtggcaatc
      241 actgcagtca tttgcagtac taatgtccaa ttcagcctcc tttcattctc ctgatttagg
      301 tggtcagagt ggtttcgtag ccgacacggg gaagctgtgc tgtttagcag gctgtttaat
      361 gggaaactgg cagtcttatt tcttttctag atttggtttg tcactaggtc tccattacat
      421 gccactcagc tttgatgtct ttggacagga ctgatcaaaa gatgtcattt gacc
//
LOCUS       KCLA01000566             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9147upu ultra-conserved element locus uce-7314,
            sequence.
ACCESSION   KCLA01000566
VERSION     KCLA01000566.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9147upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-7314"
BASE COUNT          304 a          197 c          146 g          254 t
ORIGIN      
        1 agaagcacac aaacacatga gagagaagga taaaaagatg aaaatcccca agaaagagaa
       61 ccagcctaaa attaaatgtg tagttttcca atagttcaga gcagaaaaga catcactcta
      121 tattgttata ttaacactct gagtaccaca atacaactag cactgaaggg gagtggtgag
      181 tagttgtttt ccttggtttc aaatggctaa taaacaccac tatagtgtac tgcagcttgc
      241 ttttccctac actaatgaca tgaaagctgc ccattatctc acccacaggt accatctccg
      301 ttacctcagt gcagggctca cactctgctc ccagaggaga gcaagtgctg ccaagagatt
      361 tctattgcaa tttcctaagt cacatcaaac catcacaacc tattcagcac tgctttattc
      421 aaacagaaaa aactttaagt ttccactgta attaacccta tcctcgttaa gataattatg
      481 atcaagctcc ctgtcacagc taatatcaca gcatcattgc ctatggctca cactttgccc
      541 tcattagctt acaaaaacac ttcgctaaac aggaaactga atctctttgc gacacaactt
      601 aaagcatttt gtaagcagac agtaaataat cctttagaat ataagcgttt cagatatgcc
      661 atttgcctca agtccttcag ctaaccagta tgatttcttc cagccttctt ttccagaatt
      721 cattcacagt ttgtaattaa gttttaatca caaaggaaaa tcagggtaaa gaaaattgtc
      781 atatatgcat gacaattatc aattatggtc cctctggcct gacagggatt tgattacaac
      841 aaaagtgaag agcagctctt cattttggtg atatttgatg aggaaaacac taaattttag
      901 a
//
LOCUS       KCLA01000567             296 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9162upu ultra-conserved element locus uce-7789,
            sequence.
ACCESSION   KCLA01000567
VERSION     KCLA01000567.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9162upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>296
                     /note="ultra-conserved element locus uce-7789"
BASE COUNT          100 a           65 c           45 g           86 t
ORIGIN      
        1 ttatatttat attaaacctc tcagctagat tcttagacac atcactgctt aaaatgcagt
       61 cacctgacaa aaacagttct aattattacc cccttgggct aacatttttc agagtgactg
      121 gctaaaatgc actccagctc ataatttcta tctctgacag tggaagacat aacctagttt
      181 cctctaatgc aaaagtctct aatctagagg gcaagaccct gttccatata acactgaaag
      241 gagaaaatgc aatttgagca caaggaaatt gcacacatag tttgatagtt ctacca
//
LOCUS       KCLA01000568            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9178upu ultra-conserved element locus uce-958,
            sequence.
ACCESSION   KCLA01000568
VERSION     KCLA01000568.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9178upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-958"
BASE COUNT          310 a          187 c          188 g          322 t
ORIGIN      
        1 ttcagtgtcg tctttggcct gacacacaaa ttaaaattgg cagcatttta agcctatgat
       61 atttaattct gtattatttt actcttcagg caacagtggt atgcctctgt ctagcccatg
      121 tgtgcctgcc aataatgtga tcagggtaat ggaaaagctt tttaaacaaa taatccatgt
      181 agttttggta agtaaacaac gaataagctg gtgagaaatt tctttgactt tcaggaaagg
      241 tgagatattg taggttcatt aatatgtaaa gggcactatg tagatctcaa tgaaagtgac
      301 aaacaagtgc cacagtgggt attgctgaac acaggaaatg gttggtttga gctaatatat
      361 acttttggca ctacttcatc ttaaaatcat acatagcatc tagcaccagc aggttggttt
      421 tatagcttca tctattactt tactgtcact gttaattgtc ttcttttacc tctgcagtat
      481 tctacaaatt gggcctatcc aaagtgacag gaggaagaac attaagcatc tgacaagatg
      541 atatctaagt tcaatttcct actctttacc tgatttatac ctgcagaaga taattttcct
      601 ttctgtcata aacagctcta taaatcagca gtgcttatgg aacaactgca tagagagccc
      661 ccagctttgt atcctctgtg tttcctatta ggaagccatt actgcagaat tttcctcctt
      721 caaacaaaaa tgatgaaatt taataccact gagattacaa agattaagag ctgaagtact
      781 gctggggctt ttcaattgaa gcagctatct gagcaatctt tgcaaaactc aataaaaaca
      841 gggtttctgc ctttgacatc attatccatc tgtttggatg aaattgctgt atcatggtat
      901 aaatctgtga tacaagtgac ataacctctg aaataaaagg gaacattaac tgctctatct
      961 tctagaggcc ctgggacagg ctggctataa gctcactcaa gtgtgat
//
LOCUS       KCLA01000569             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9193upu ultra-conserved element locus uce-7077,
            sequence.
ACCESSION   KCLA01000569
VERSION     KCLA01000569.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9193upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-7077"
BASE COUNT          179 a          137 c          112 g          130 t
ORIGIN      
        1 ttaaggcctc tccaccacaa aaacactctg atagtcttac actgtaaatc actttggtag
       61 tttatcagtc cccttacaac acagttacaa atgctcagct atagaaagga agtgaagaag
      121 ctccagagta gtaacaaact cagcaacctt atgtctgtct ctctctctga tcccattata
      181 aactaacaca atatttttct ccaattttca gtcggtattg cagctcacag cagaaaagat
      241 actgaaagca gcaggagcca ggcaggggtg tcagacttca gagcggacac tgccttggga
      301 cctggggggg ccagtaaatc agggcacgct tgtcaacagc tccaagctgc aggaattact
      361 caagcgaaaa taacaaatgg ctgtcattgt ggagccaaaa acctgtgatt ataattatca
      421 catccccagt gaccttgcat aaactttaat ccctctccaa tggagcattt aaatagcctg
      481 catctactgg caggggaccg tgtcccctta gttgaaaata gcgggactag gaaagaaaca
      541 agccacaaag aaaccacc
//
LOCUS       KCLA01000570             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9209upu ultra-conserved element locus uce-1749,
            sequence.
ACCESSION   KCLA01000570
VERSION     KCLA01000570.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9209upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-1749"
BASE COUNT          240 a          112 c          139 g          275 t
ORIGIN      
        1 ctcataaaag tcttggaagt tgattttctt attaagaact ttgcttctgg tagcattcag
       61 aacactggaa tcctgagatg ttaaaatttt tgcatgggaa taatggtgct aacttgaata
      121 aatgttttat cttctctatg cactagttaa gtatatagtt tttaattgaa aactgtcact
      181 tcttttaaaa aatgaacttg cgtgtggaaa ttttttagtg catctccaag gtatcaattt
      241 aataactatc aaagtagcta gtgcagttgt tgcatttaaa ttgatttaca tgtcaagact
      301 ggcagtttag cagctgcgct attattcctc gatcggtcaa tttacttgag aaaaacctac
      361 tactgagttc tactgacctg catgacaata taggccctat ttctattcct gtaattaggc
      421 ctgcgactaa ctcagaatat ttttaattaa aatattttgg tcaatgtgtt gcaccaaatt
      481 aggcctttca gtgcagattt aattctggaa acggtgtgat tagaatatgt aatgagtcgt
      541 gttaaatttt agattaacag gttgtgcata caggttttag agtttactgc agagattttt
      601 caaactttac ttggaaaagt tagaaaatag aaaaatgttt tgcatgctta tttttgaatt
      661 gatcataatg taccgtaaat gaatggccct aggcaccctg agagattttc acacaaatgt
      721 tgtgaaaaac tgaaaaattg tcattaaata gtttctgtac agtcag
//
LOCUS       KCLA01000571             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9225upu ultra-conserved element locus uce-6668,
            sequence.
ACCESSION   KCLA01000571
VERSION     KCLA01000571.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9225upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-6668"
BASE COUNT          193 a          124 c          131 g          175 t
ORIGIN      
        1 tcttactagc cattcccaaa tttctgctgc tgtacattaa gcctcccctt tgtgaagttg
       61 aagtagctca taaaaatgtt aagtaaaaag tcaaaactta catgggaact gttacatttt
      121 ttctgtgtgg ccataatgag gttatttatg gtccatgtag gaaagattaa aggttttcat
      181 aataaaggaa agcaagagcc caagaattgg gtgcctccta acagcactga ctctcaagac
      241 aggataaatc attgaagcaa ccattaaaac ttcaagaaga ttgcttgtaa acctccaagc
      301 gatgccaata aagcatattc tttgccatat agtagtccat atggtggagc tcagcagttt
      361 ttcaaaactg agggatattc acaatttaac cctactgtct ttttcctgag agggcacggt
      421 gccaatgagc cactatcaaa tcaatgcagt ctttacatgt gggaggacgt ggaacactgg
      481 gagtagactg aggagaagtt aactcatcag gtagcaagct gtcccgagaa tggagaagga
      541 ttggatcttg gcacttaaga acttggcaac attgcttctt gagggtctcc catcataacg
      601 cactctttgt gacacacttt cat
//
LOCUS       KCLA01000572             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9241upu ultra-conserved element locus uce-7668,
            sequence.
ACCESSION   KCLA01000572
VERSION     KCLA01000572.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9241upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-7668"
BASE COUNT          151 a          192 c          196 g          131 t
ORIGIN      
        1 ctccttcttg gccagctccc catctcctcc ttgacgtcgc ggagctgccg ctgcagccgc
       61 ttgttttgct ccttctccct gttctcagcg gccacacgct gatcccgctc ctccgtcagc
      121 ttctccatgt tctctttcag ccgcgtggcc aggctctgcg cagcgacggg caggggttca
      181 ccccagcgaa cccctcaccc tgcagtgaca ctcacgcgaa gacagatccc atccccatga
      241 attgacagga ggagcagaaa acccctccgg ggccagggaa gggacagaac aaccgcaggg
      301 gttttgtcaa attggaaaaa tagatttaac tgtgtgtgaa gtaattacag cgggtaacgt
      361 agggaaaaaa tagctcccgc tctcccccag ccgccgagcc agccgctgca tatttatggc
      421 cccggcagag agcgcgggga agggaaataa cagctaggaa aatattaaga ggagagctaa
      481 gctgctgccc cggcagagct gcagaggcag aatataaagc aggctgcgtt tagcggggcc
      541 agcagagtct ataatttccc taagtcagtg cagggaaaga gcagcacttt gccgagcggg
      601 gtggtggatt actgttatcg gtgctcgcgg ggagcttccc ctgcagggat agggatgagt
      661 ggccggcagg
//
LOCUS       KCLA01000573            1110 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9257upu ultra-conserved element locus uce-7135,
            sequence.
ACCESSION   KCLA01000573
VERSION     KCLA01000573.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9257upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1110
                     /note="ultra-conserved element locus uce-7135"
BASE COUNT          395 a          223 c          194 g          298 t
ORIGIN      
        1 acagaatcaa caaggacagc actgtcctta ctaaaaagag cagaagatgt tatacttctc
       61 catttattaa atgattcaac attgcggtat gcctgcaact aattagtatg atcaacacag
      121 tgcagggcag gaacaaaagc agaccagcct ctgagatgtg ctgatgtaaa agcacacagg
      181 agtatacatt tttaaaccct ctcctataat ttataaccat tacatgctaa ttgccccttg
      241 atggaacttt catttgtagt actgaattta atgtcatttc tgattaggcc cgtctccgga
      301 cattaaaaca gaccaccagg tttacttcta actagcagtt aaataactta ctttctttaa
      361 aactgtctta tactatacaa catagaaaac ataaggtcag ttactgacaa ataataatga
      421 tacaaataga cataaaaaga acacatggca aaagagagta tatttgctaa gtcatatact
      481 taccattagc actgcaaagt tactgaagtg tgtactctga atggtggtaa tattgcctgc
      541 agaactaatt atgtggcacc cttctcccca ccagcctcca tgtccatcta gaaggtcaaa
      601 atcccagaag gctgcaatgg ggtctatacc ccgtgcaaag tgcctcaacc ctatagttag
      661 agggctggtg agatttccaa aactgcaccc atctgcaaaa gcaacaaact gaatcagaga
      721 aacagagtgg aaaacccttt attgatgaat gctgtgtgaa gagatgagat agtctgaact
      781 atgggaaaaa agcaatagat agatacactt aatggtcaaa atcaaaggga gtcctcaaat
      841 tcagaaaagt ttgcaatagc acaaaaacat ctgagcattt cagtcccaaa atttgttcaa
      901 atgatccaat aatctttcac aaagcagatt ttttttggtt tcagattctt cagttatgac
      961 cagcgttaca tgtaactgca gaaatggctc agtttcatct gtgattaata gccaattccg
     1021 cacttcgaaa gtcacattta aaaaccgtga acaaaaatga gagcactact cagtatcaaa
     1081 caaaatcagt aaaattgcct gggtgaatca
//
LOCUS       KCLA01000574            1100 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9272upu ultra-conserved element locus uce-1817,
            sequence.
ACCESSION   KCLA01000574
VERSION     KCLA01000574.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1100
                     /note="ultra-conserved element locus uce-1817"
BASE COUNT          323 a          231 c          235 g          311 t
ORIGIN      
        1 tggtgcaggt aggttttcat atccgtagtc ttctcttgca cacatgacag caaagttttg
       61 actctcagtc acagcagaaa tgaatccatg tgggtcaaag atttacacca aagttgggct
      121 ggggggtttg tttctttact gtcccatttt gctgtctgtc agctgtggta atatgtggag
      181 aaccacatga agatggaata ttttaaaaaa aggtataatt tctctgtaca aataaatctg
      241 gagcagaaca atgttactgt gagaattgag gggtgggtga ggagtgggtg ctgtatcact
      301 gcaatgctgc tgcttgaccc atctgccaaa gagcagaggg gaataaaggc tgcccttgcg
      361 gccttgggaa cacgctgcat taatagaaca tgcaatggca ctggatctgt ggcagctgtt
      421 cgttcaatgt ttcatgcttt tagccacatc tgctccaaat gagtgttaat attgcagtgg
      481 catccactaa ggatgggctc tgtcagcttt gctaagtatc aggctgaccc cagtgacaac
      541 gcaagagcag ttcatcctgc agaacactct ccctccacaa cccctctatc tgtctcgcct
      601 ggctccactc catcagaatg acttcctcaa tgctccctcc ccactaacgg ggagaagaaa
      661 agggaaaact aagacaatga ctctcaagga gaaaaattgc atttatttct agcaccctgt
      721 ccagcaatgt cagataacag tttattcatc ccctggcccc tgtgtgacat tgaagcatat
      781 caacagtgac aaaagtatat tgaataatta tcttgaaatt aatacattat cccaaactta
      841 aataaatgtc atctgatcaa tatatcttgg aatggaaagg gaagagaatg tgaagggcat
      901 tgcttcatta ttcattaatt ttagagtaat gtaggcagat gaaatggtta tttcagagca
      961 ctgctattat actcactggc attttaaata actcccaaga tttaacagta tatattccct
     1021 tgtcgaagca gcttatacaa gttaacactg tggcttccag atttccctgc ctgacagtgc
     1081 tgcagaagac cagaaataat
//
LOCUS       KCLA01000575             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9288upu ultra-conserved element locus uce-3264,
            sequence.
ACCESSION   KCLA01000575
VERSION     KCLA01000575.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9288upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-3264"
BASE COUNT          208 a          150 c          177 g          250 t
ORIGIN      
        1 aataagcttt tgtctgcaaa catttttcac ctattacagc cttatggata ttggcttggg
       61 tcagtagatg agacttaatg tgtaaatgct aaattaatgg tcccttttgt ccctctcctt
      121 aggaatcact tgatcttttt cctatttttt tttaaaggga tgtaggcttc tctgtgcact
      181 tccagtttca tccactgcct tatgctggca gtaaatagct tgcaaaaacc ggcatttgct
      241 gggggattgt ttttctgttt attggaggtg acatgagcag tggggcagtg gcagagaggc
      301 catgttgcca ttgctaaata tacatccctg acagtctgat aataggttcc aggaagttca
      361 gtggaaaatt aaaacaaagc aacatttata gctgattgaa cttgaaaagc aattttcatg
      421 ttgaatggca aatatgtgga cttcagcatt ccaggagact gatgcagctc cactggatgg
      481 gcctgacctt gtgtgcagaa tggactgtgg acacagcagc aggcagaatg gcttcatcta
      541 tagagcactt catggggagg aaaaatttgc tatcgtgcac agaaatagtt ctcacatacg
      601 cctatattta tacagtgtcc acaggtctga atagcatctt tcgtctgaga gttttgcagc
      661 ctgttagcac tacaagaatg tctggtactg ggactgtctt tgtccttgct aaagtgctaa
      721 aaatacccag ccatataccc cttctgaagc tgtaagctgg gtttgctttt attggttttg
      781 taaaa
//
LOCUS       KCLA01000576             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9304upu ultra-conserved element locus uce-1430,
            sequence.
ACCESSION   KCLA01000576
VERSION     KCLA01000576.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9304upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-1430"
BASE COUNT          154 a           85 c           99 g          126 t
ORIGIN      
        1 tttttttttt tccaccagct ccaaatcccc ggcatatgac cttctgttaa atagataaaa
       61 aaaaaattgc ttatcagtca tgcaaatgag gctgaattca ttttccacaa cagatggcct
      121 catagataat gatgatggaa gagagaaaat tgaatgtctc tcacaaggtg gtcatggcaa
      181 ccgagagcag aataatatca ataataagct cactgcataa taaggttgtc aatcccacaa
      241 atcaaagtct ccagctaaat caggtatccc acccccagct agttatcagg taaatagaga
      301 aatagagagc atcctttttc tttttaaacg aggagctgtg aaaagaaatg gtagctccag
      361 cgattccagg gtatgagggg aaggaaggag cagaagagat ttttcaccac taattgtgct
      421 ttatttaacg attcggggag ggaggtatcg ggggtttaat cttt
//
LOCUS       KCLA01000577             999 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9347upu ultra-conserved element locus uce-2930,
            sequence.
ACCESSION   KCLA01000577
VERSION     KCLA01000577.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 999)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9347upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>999
                     /note="ultra-conserved element locus uce-2930"
BASE COUNT          300 a          222 c          200 g          277 t
ORIGIN      
        1 caacagccaa atgatccaca ggttatctag aaccataatg aaagacaggt agatcaaatg
       61 ggctacttac agatgctatc tgcccagaga gctgcacaaa gtgcctggca agagtaacat
      121 ctggccagct aaacccctca cattctgtat gtttacactg tcaccccatt gatccagtct
      181 tagaaaaggc aatctattct tctttttgat gtgcagaata taaagctcaa tctatagctc
      241 agtatcttgg aatgtgaaat cagagagtcc gcaaactgca agcagcaatg gggtttgagt
      301 tgtttggtgt tttatttaaa gcaacatata tgttgacttg tgcttcttag cacagccttt
      361 gtattcacct tatttagtac aagtatcttc ctaaatagca caataatggt ttcactctaa
      421 caggattgtt aagcaaagtt gtttcatatc taattaggct gagcagagta acaggaccac
      481 tgacctccag gaaactcttc tctaaggcca cacgtatgtt ggtctctatg ctggtgcgtt
      541 tcttcctcct acggttcaag ccttcgaccc ccatcccttg agaattcagg gcacttgggc
      601 tggagagagt tgaatcagat gagaggtttt ctgaaaaaaa agatcaacaa aactcaggag
      661 attttatttg aatgcactgc agtctaatgt aagtgttgtt cacctgggca aggtaggtta
      721 aaacccacgc attcacttgt aaatgacaac gtacacttga aacatgaaag atgcaagtaa
      781 gcttagggag cacgctctgc tcctgcatgc taccacacaa aatttgactc attccaccta
      841 acttttgctc actgattcta taatcctgtg aaagcaagca gtaggtgata tccatgagcc
      901 acagctgtaa gccacaggca aatacagagt tatctgagca gcctggaact ttctctaccc
      961 actctgcaat acagtagagg aagttcatag ccagcttca
//
LOCUS       KCLA01000578             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9362upu ultra-conserved element locus uce-65,
            sequence.
ACCESSION   KCLA01000578
VERSION     KCLA01000578.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9362upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-65"
BASE COUNT          266 a          165 c          139 g          299 t
ORIGIN      
        1 ttaatggaac tcttgtctac atgctctccc cttaaaatgg taagtgcctg cccttatcct
       61 aaggtatgtc tagactgagg caggaaactc tgggtcagac ataaggtgac tgaaaaaatg
      121 catttgattt attcatatct cttaatgtga aatgtgtatt tgaagacagc aaaaatctca
      181 gaaagttttt tttgcaacag ccaattactc tcggcttttt aattctatca aagcatttga
      241 aacatttcca ttgttctaag ggttaaaaac ttcaccgtga caatgatgag ccttattact
      301 cagtcaaagt aaatggatca ccatataacc tttcagaaat gttcttcctt aagctattaa
      361 aacattccat gcccttagat gacaacaatt tctctgcctt ttgaaatttc ttttctatcc
      421 tgcagagttc atagagatat gcttggttaa aatcaactta tataaaacta tgcactgtaa
      481 attctgacac ttctgtttga atctcttttc aaacacttgt ctttgctcac cataatagat
      541 gtcagttctt ctgatgtagt tcaagcatga gcttcatatg aagactcagc tatgtctatt
      601 gcatttctga agctactact cactgaagtt ttgtgctgtt tgacatcaaa gataggcaag
      661 aatcacctgc tgagttcaca tgcatggagc aaaacatctt caaatcactt gtgctagaca
      721 aaagtttttc atattaagct ttcactatca tgtggactta aagacaaatg tagtccttgt
      781 taaagttgca gcattgtgtt attaaactat gcatctaggc ctcatgattc atacaagttt
      841 taagatgaaa aattgtcatt tcgctgatt
//
LOCUS       KCLA01000579             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9376upu ultra-conserved element locus uce-4312,
            sequence.
ACCESSION   KCLA01000579
VERSION     KCLA01000579.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9376upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-4312"
BASE COUNT          244 a          190 c          196 g          273 t
ORIGIN      
        1 aagcaagcta tgatggcttg tgggttttgg ggatatagag cccagcatgc cctctttttc
       61 caggtccaat aggttgattc cactgctggc tttatttcat accagttgct gggtttatgg
      121 gggtcattgt cttatttcaa gcaccctatt gcctggagtc ccacgtttct ttcctggagc
      181 ttccccacat gtgccatgta aaaccagtga gcagcccaga aagccacaaa tctttgtcag
      241 aagatggaga gaaacaaaat taactgggga gaagaggggg tgggtagaaa aaatcaacac
      301 agattggcta ccttctgagc tttgccaaaa agcgtacgct ttcattcgga atgcggtgcg
      361 aaaacgctcc ttattattca agacaacatt cttaggctct tttgaaggac tttcttcaat
      421 ggcatctaca ttcagagggg taaatagctt tcctttagta ttggtaccac gaacccgatc
      481 caagagaccc agcttttggc tacaaaataa gcaaaagtaa tcattttcct cctttgtaca
      541 cgttgaactc gttttcatga tgctgcaagt atataatagg ctaaagaaat ggttggtaca
      601 caaggacact gctggggcta ccatcacaca tcaatgtctt gtaaacaacc gttaagttcc
      661 acagataatg aactgctttt gcttagctgt tttggtctca gttgaaactg ttaccgaggg
      721 tcttactgtc ctcctcatcg tagcacttca gctcccggag catggctgaa gcagtaggtt
      781 tagtgttaaa ataaatgcca ctgctattta attttaagga tactcggtct gtcctcttca
      841 gtgctttttt aattactggg tctgtgtgag actactaaat taataactca tagaatggtt
      901 tag
//
LOCUS       KCLA01000580             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9392upu ultra-conserved element locus uce-2703,
            sequence.
ACCESSION   KCLA01000580
VERSION     KCLA01000580.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9392upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-2703"
BASE COUNT          205 a          149 c          167 g          231 t
ORIGIN      
        1 tgcctcagtg aagctgggct tgctccccac aaccctctcg atggatacaa aggggctcat
       61 cagggtgata atcaagcctc tgtaatgaaa caacatttga tttatttatt ttttatttaa
      121 gttttttttt gagagagagg gggggcaccg cgcaggctgc gctgaggcgg gcgctccgca
      181 gagcaataca aatcagaaat gagatttttt aagtcctaat gaacctgatt gcaggaacat
      241 ttataatccc ccatggcttt aaatgaaatc agatataatc aggagctatg gggaaaggga
      301 gtgtttacag gcagagattg ggaagtgctg ctgtattagt aaagatgctg ttccttctat
      361 tgatgtctaa aatgatggat aatgtgagaa tggcaaatat actatttgtc taatggctct
      421 gcaattaaat tcccctgtaa atgacccatg cctcatttca tcctaatcta tggaattttg
      481 attgaattcg tcagctctaa ttgaaaaata ctgcacttta atgtctgcag tgcagtttca
      541 ggaccgcgct gcttttaatg agacggtgcc cccctgacct gggaatattt tagaccttta
      601 ttcgggaatt ttaaactggc gcctttccca actacatacc acgaaaagcc gggaatggga
      661 gcgcaggtgg ttttctccat tcgtgcctat gcgctttatt cagggatgct caaaaaatat
      721 ttggactccg cttcttaaat ttcttattca tt
//
LOCUS       KCLA01000581             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9408upu ultra-conserved element locus uce-4522,
            sequence.
ACCESSION   KCLA01000581
VERSION     KCLA01000581.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9408upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-4522"
BASE COUNT          114 a           66 c           85 g          126 t
ORIGIN      
        1 ggttaggcat tttatccttt gagtaaacag taatcatggt gtgaagaaag tggggcattg
       61 gagatttttc ccattctttg agaattccat tcttcctttt tagtttgctc caagggctct
      121 ttggggatac atatattaag ccctttaaat agttcataat aaatctttgt ctcaggctga
      181 ttctgacagt tttttaaaga gtcttttaag agagaatcct caatcatttg ttaatccgtg
      241 gggtgatctt cagacttgga agaaaaagaa acggtgcaag cttcagggtt gtgaaaatac
      301 aaggtagaaa aaatttaact cagaaaaact tgggaaatgc tctactgtgg aaatcacacc
      361 gaccatcccg tgttctgcca gtggctcagt g
//
LOCUS       KCLA01000582             952 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9424upu ultra-conserved element locus uce-2299,
            sequence.
ACCESSION   KCLA01000582
VERSION     KCLA01000582.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9424upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>952
                     /note="ultra-conserved element locus uce-2299"
BASE COUNT          295 a          176 c          186 g          295 t
ORIGIN      
        1 ccactgcctc agtggctggc ccttccacag atgctgtgac ttttaccaag tcatgtcctg
       61 gtgcaatgcc agactgaacc gatggagaca taaaggttgg tttaaagttc ttatgtgcat
      121 tgctgctttc attgtcacat atagtctgcg ctgctgggct gtgattgagt cttagaatgt
      181 ataataattt atttacagat gctgtgatcc gaaataaaag gacagggaag gagggaatgg
      241 ctgctaataa tgttttgctt ctgctaaatt agtagggctt gctaaagtgg cctgccatca
      301 aacagtattt acagcaatgt ataaaacata ttagtgacgt ccctcttaaa ttcaaaagct
      361 ttagctaata ctgcagtctg cattcaaggc aatgctcagg gcctaaaagc cagtcaataa
      421 acattttagt actgctctgt tccagtgatc tgaattcaat aatgttacct ttccagaagc
      481 cgcaaaatgg aaagtgaaag aatgatttat gaagcttagc tatgcatagc cagataagaa
      541 agctttaact gatgcttgca ggattctctt taatgaagta caagttgcca agataagttt
      601 aggtaaatga agcctctgtc acaatatgtt acagcaaaag aaatgacaga cacagcagag
      661 cagatggagg ttattacaga acagtggtgt caagaaatgt agtctaggta actgcacaaa
      721 gacagaacag atgcaataga tttgttatta acattttcat gataccaacg aatatttata
      781 gaatctgttt aatttaaacc tagcaagctt ctttcattag attgtcattt aaccttcact
      841 gagatcacat tactaagcca tcactttctt ttgagtagaa tatttctttt tcagtaccac
      901 cctccatttt tgatgttgcc attaactgca aagccatgct gtttttttct tc
//
LOCUS       KCLA01000583             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9440upu ultra-conserved element locus uce-1865,
            sequence.
ACCESSION   KCLA01000583
VERSION     KCLA01000583.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9440upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-1865"
BASE COUNT          323 a          149 c          177 g          279 t
ORIGIN      
        1 acttcaggag tttcactggg aaatggtgag tcatgctaac atgcttttct cctgcacaga
       61 actaaatcat ttttgcacag tttagtattt tggagttaga agcgagaaaa tgcaaagtta
      121 atttaaaaca catctgattc tttaaattta caataaatcc aaatgattta ccagaacata
      181 aaattctcac atgcagagtc aaggacaata ttctattcat gtgcaagagt catttattcc
      241 tttataatta gataaaatga actgcaattt tttaagaaaa aatttgcatg tggcaacagt
      301 aatgtattat ggaagggtag cactttgtta catccatttg ttaggcagga cactggagct
      361 gcaatttaat agacaagaaa taagtacagt agaggaaggg aaaaaattaa attccgcgtg
      421 atcagcaagg tttcgaacaa tcactagcca acagaagtgg gtaccatatc tataagtcat
      481 tttgttttat aggccattag gatctcctga gagaggctgc atggagactg ctgctttttg
      541 ttgaaattaa aatgtcagag aaaaagaaat agaacaaaac agggaatctg caattaatta
      601 caaggccata aaaattcaat aatcaggagg cagtgctgct gtaggcacag cagtatctga
      661 ttcaggctaa caggaatgga atacattaat cttttcaaat tagtttttta atctgacggg
      721 gatatatagt gacgtgttct tttactgttt gagcagagct gctgtctaat atataatgct
      781 gagtgtctgg aattaggaca gctatagcca ttttgtgact acaacatttt cacggcattt
      841 atccaaccct atctgtacac ctgtccaaca gtaatcaagc aaacatgttc aaagttcaaa
      901 tcctagatac tgcttatgaa aaagaatt
//
LOCUS       KCLA01000584             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9455upu ultra-conserved element locus uce-5732,
            sequence.
ACCESSION   KCLA01000584
VERSION     KCLA01000584.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9455upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-5732"
BASE COUNT          165 a          110 c          117 g          155 t
ORIGIN      
        1 ctcattttaa ctaaagaagc cgaggtcgac ggcctctcaa atgaaacaga taaggcgaca
       61 tagggttctt gtcagaaaca aatgttatgt ctctccctac tgaaaagctt aaagatatta
      121 tcagcaaaag cctagttggg cctgaaatgg gtcccagaga agtaatatta accaggctcc
      181 tggcagatca tttatttatc tcaagctaaa ttcaataaag agagccatat ataagtgagg
      241 gaaaataatg cagctgctag taatttatca ttggatggaa agtcattgtt atccttatct
      301 ctccaatgat gttctatttc caactggtaa tgaattatgg ggcttgccac atctttacta
      361 tgtgacaggt caacactacc tcatgggtac tgcactgtat ttatgcaatc gatagccagt
      421 ttgtggagaa aatattggca accgtttggt gagagtgacc tagagctccg tggctctgtg
      481 atcgctggtg gtggtcagtg gacacaacgg cctctctacc cacctttaaa acaaagattt
      541 ccctgaa
//
LOCUS       KCLA01000585             623 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9469upu ultra-conserved element locus uce-7214,
            sequence.
ACCESSION   KCLA01000585
VERSION     KCLA01000585.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 623)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..623
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9469upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>623
                     /note="ultra-conserved element locus uce-7214"
BASE COUNT          205 a          113 c          106 g          199 t
ORIGIN      
        1 aatggaactc aatacttttg ccaccatttg tgttgcagtg aaagaaaaaa atgtttactc
       61 tcttgtaatg caaatactgt atcttataat ctagtgtttc tgtacttcga atggaaattg
      121 actttgtaag aggatgcatt ctcttcttaa gaacgcttat aaatccttct agttcagctt
      181 ggaatttgtc cttttttttc ataaacaata aaaatagtcc tcagtattga aagggtaatg
      241 ttaacatcat ttgccattag tcagaagtgt aacttcatta aagcagaagg ctatataatc
      301 cctacaggag ctctctgcag gaaatagttt attctcactt agcatatctg tgaattctat
      361 cagcattagt gtctttcaca atgtttgttt cctttgaata tttatgaagg actgtccgat
      421 gacctgctta gcatctccag gtttgttctg ctttaacaac ctttcaagtg gagtgaaatc
      481 agaagactca ttctccctca acagcaagca tcaatatggc agaggccaag gaaaagagat
      541 ttctatcatc aaaatggaat aaaacaaact atataggatt gggctataaa acaaatacaa
      601 aaagcccaac acctaagcgg aga
//
LOCUS       KCLA01000586             970 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9483upu ultra-conserved element locus uce-1793,
            sequence.
ACCESSION   KCLA01000586
VERSION     KCLA01000586.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9483upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>970
                     /note="ultra-conserved element locus uce-1793"
BASE COUNT          337 a          181 c          156 g          296 t
ORIGIN      
        1 caacttgcaa actcagctca atacattccg taccagtcaa aacacacagc acagcaaaac
       61 tcctctttgc tttgccacac aaaccccgtc ttcatagtca gccctacctg atgtttaaaa
      121 aggagttata acactcattt atcttttcag gggagaaaaa attctgttaa tgcagccttt
      181 gaataagtgc caccctgctc tttaaacggt aaagttcact aaaactccag tgatttatgt
      241 gcagcttttg actgccagca cctggcagat gaagaaacct actcaagctt cagtcataaa
      301 cagatagcat acaatttaat tttaatgtgc tcgttagtcg tagcacattt cagacataat
      361 tgtgaacgca acacaaaatt atagcaaaaa gacaatttta atgctgctgt agaaaaaaag
      421 gttatatgaa gagtcatata atggtgcttc attgtcaaca acaaaacagg gcacagagtg
      481 cattacagtg tctgtgctgt ttacatgcca atattttata catagattct catatggtgt
      541 cagctgtcag ttacttctgc aaattaactg ccaaaaatgg agacgaacag aatcacttag
      601 tgtgctggta accacgggtt acctttcata tgcctaaaga taaagctgca ctatggaatc
      661 ttgggagaat aattaggcag aacaaaacag aaagttacca attgaaataa aaaggcattc
      721 tacaatagga aataacaacc aagagcgctt ataaataagt aaaagaggtt atatcacaga
      781 atgcctcata actttttaag caaagtatta cagtacaaac attttaaagg ctttatcaat
      841 gtttaggaaa tacagtacaa gtttttcaaa tagatttaac cctttgagca ctgagtttag
      901 tttgaatttt ctctttttat tctttttttt tttttttttt actaataaat accttttaaa
      961 gtcatgttgt
//
LOCUS       KCLA01000587            1181 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9498upu ultra-conserved element locus uce-2125,
            sequence.
ACCESSION   KCLA01000587
VERSION     KCLA01000587.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9498upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1181
                     /note="ultra-conserved element locus uce-2125"
BASE COUNT          321 a          206 c          274 g          380 t
ORIGIN      
        1 cgctgttatt ttagccactt gtatacctca aaatatttgg cagtgagctc acattccaaa
       61 cttgggctcc agtgatttta tggctgtact gtaaaccctc acaagcaggc atttgtaatg
      121 gaaacgttga cacaaggttg tgcagcgtgg ggagacacgg gctgttataa tagacctgac
      181 tcctttgtgg ctaacgttga cttgaagtaa ctttcagcct ttgaagtcct tctagtcggt
      241 gcttgactgg aaagtacctt gtgatacagc ttctctgtgc cgctaactta tctgggcagg
      301 agaagcactg tgtactgtgg taaagttaac atagagtgag ctttaattaa gtgggggaaa
      361 aggggggggc atttcacctt gattagatta aatcagtcct ctctttggca tgtgaccatg
      421 ataccgaagt agcactgggt caagagatct gagatccgtt cgtttgcata tagcggcagt
      481 atggtttaca ggtaatatta ttatcaacct acttttttaa ctatctgttc aactaagttg
      541 tttaaacgag aaaggaagcc ctgggcacaa agggatcttc atgttcattt ggtgtattag
      601 gagaggcacc cagttaaaga gtgttcatta ctattgtaaa ttcctgcccc agggcttgta
      661 tccttgcact agattacatg aggtctatgt tcatggacag cgtttggcgt ctgattgaag
      721 gtccagcgca gctaattaat ttcattagga agtgaagtca tcttctagca ggaattaata
      781 tttggagctt cgtgttgcta attcatttcc agatttaatt agctcagaga agaaatgttg
      841 cttgggcaag aggacttttt aattatcagc ttggataaat ttgaaaatgt tgatgcctag
      901 gggttgagtt aattaaaacc tgcattattt taactttaat tagctcccat ctttgttttg
      961 cttcaccata tggccatgtc ctgtagtcaa atttagttaa ttaagctaat taagctaatc
     1021 attttaatta ctcaagacaa tatgattgga tagaggatga ctacaagttt atggccaagt
     1081 acttcttttt cattaagttg aagggacaga gttatttctg attgcggctg gcaagcagtg
     1141 ccgggagttc agggatgtga cagcctcaga gatattaagg c
//
LOCUS       KCLA01000588             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9514upu ultra-conserved element locus uce-1809,
            sequence.
ACCESSION   KCLA01000588
VERSION     KCLA01000588.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-1809"
BASE COUNT          223 a          133 c          168 g          241 t
ORIGIN      
        1 taaatcggat atgtgaggtt atctgggatg ctgaaaagct atactcagaa agtatttatt
       61 ttttttataa tgaatgatgg agtgcttctt gcatctggca actataggcc ttttctgaat
      121 acagcaaatg actgtttcaa aatgaaaacc actatgtgtt tgaatgtagt attatgccta
      181 gttgcttttt gagtgaaagg cggctttaaa aagttaggta tatcattgcc aaaaagggct
      241 acatagtatt gtcagcattt tgagaaggaa taggtccttt ttttcctgaa actccattct
      301 ggacagctgt tagtgactta ccaaactttt catatggata tgtatgttaa tgacaggcaa
      361 tgaactggag atgaagagac ccaaacacag accgatctct tcagtgcaca tcaaaagcct
      421 ttacaaaagg agcagtaaaa gaggcagtga tggtggagcc ttcacttttg tacactgaat
      481 tagttctgca agcaatgaaa ccgatctttt ctccttgcca gaaaagtctg gtgatttttg
      541 tgagtgctca ttagcacaag aggcatttgt gaagataatt gactgacgct gatactgctg
      601 gctgtcacaa cagtgccagc agtgtatgtg cgttttaata gttgtatttt ttcccccttt
      661 cttagatata atgctttctg aaagatactg gcgctctaaa gatctgtgag cccatgcgaa
      721 gtggggaatt taaagaaccc tgctcaggga atctgtccat ctgtc
//
LOCUS       KCLA01000589             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9529upu ultra-conserved element locus uce-2487,
            sequence.
ACCESSION   KCLA01000589
VERSION     KCLA01000589.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9529upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-2487"
BASE COUNT          287 a          162 c          186 g          287 t
ORIGIN      
        1 ttaagagtag tatctaagga gaaaggagat tgcttaggga aaaaacaagt ctgttgtgct
       61 atataatttt gtctggtttt gccattaata caaatgcttc ctgctggttt gaaaatgcac
      121 caatttttaa tccagcatta ttgtcctcct aatgctacat ttccaaccca attcatcccc
      181 ttttctgttt gaaaatccat attaaaaggg aagattaaaa agaaacggcc aggtatcatt
      241 ggttcatatg catacgggtt cagcatgtga ggatgctgtt cctaggattg gccttaagat
      301 gtgactgata gatcttattt gtctgataga gttgaccagg gaaatagagc tacagctggt
      361 tacttcatta gctcctctca ttgattgaac cctgctgaag tgatgcagca ggctcctgag
      421 ataactgctg gtaatagaac aaaatgaatt cttatcacag agattggaaa ggccattaac
      481 cctggccttc aatgcttttc agaggtcaca gacaggaagc caagcggtga ctgggaaaac
      541 tgttttctgt ctaactacag gtcatgttag agggggtgtg tgacttttta cccttcggtt
      601 tctgtacaga tgaaactgtt acactgacag atgttaataa tcagctgtaa ataaatattg
      661 gaagcagaag aagaaaaatg agaaagctca ggaatttact tcaataaata tttaataaaa
      721 gagcaattgt tactgtgata tttgttgcca gttctgctgt agatttttgc ctactacttt
      781 tccatataaa ttgaaaagag aaatacatag aggcacttaa aaaaggaaat ttaatatggt
      841 ttcatataaa aatacctttc cttccttcct tcaaagatga ggattataac tgcctgctgc
      901 ctgcccgctt gccttattca gc
//
LOCUS       KCLA01000590             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9545upu ultra-conserved element locus uce-7163,
            sequence.
ACCESSION   KCLA01000590
VERSION     KCLA01000590.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9545upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-7163"
BASE COUNT          240 a          211 c          200 g          145 t
ORIGIN      
        1 tttccacaag aggtcagaga cagtccctca gccctgctac agatccagag gaggagatct
       61 aagcccttcc caagagctgc aagccaacag tgaggacaga gagccatgtt cagcaccacc
      121 atccccagaa caattcaccc taaagagaag cagagacaag aggagactac tgcaaaggga
      181 cagacagaac tgctgcagac accagaacca aaaggatgag ctacagacgg gtcctctctt
      241 gagccaggca aggaggagga gacaccaaac gccagacaga cagaggctaa ctgaaaaggg
      301 ccagtgggag gcaagactta ctcatctttt tacacacagc catacaatac tcctctgact
      361 caaaattgtt cctgttgcct ccgcagcctc catatataaa gcgaacgcat tttctcttgt
      421 taggatcgaa gtaccaacga ggcatcacag cccggcaggg ccctgtcatg gcctcctggg
      481 agcagacagc tgtggagacg ggttagaatg tagccaggga agagcacatg cctcgctgag
      541 tgacttctgg catctgcagg agtgattttt cctaaagact gaaacagcca ggttctgttt
      601 tgctgatgcc acagtgttat gcctcgagtg tcccagtagg gcctccactg tatcaaccca
      661 acacaatgga aagaaaacca ggacagcctg taccactgca ctctgcccac agagccactt
      721 cacatcttaa aggtgagggg tacgagagag ggaaggctga gaaaaaggag cgtcatcacc
      781 atggcaatct caattg
//
LOCUS       KCLA01000591             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9561upu ultra-conserved element locus uce-7472,
            sequence.
ACCESSION   KCLA01000591
VERSION     KCLA01000591.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9561upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-7472"
BASE COUNT          223 a          201 c          190 g          258 t
ORIGIN      
        1 gtgtcggaag agctaagggt ccccagtgca attccaggcg cattgctttg ctgtggccaa
       61 cccaagcaca agtcattagg ggctgcccca ttggcggaac cgtacccagg tatctgtcac
      121 cccgccaccg ctgactttac atatcagcta aatctgaact gatgataggt acagtgtttg
      181 taatcccaca tcaagcggcg cttgtgtctg gcgtttattt gtgctattgc tctggcagcc
      241 tcttccagaa gctcctctca tctgacatgt cagctctaca atcaaagagg aatagtgaat
      301 tcacttttac agttaggcaa gctgaatgct attacctgtg tatttgtcac caacctgcag
      361 ctcccagcct ctaatctgcc atctggatgg atgctacaaa gttaagagcc agggacatgc
      421 atttctcagt aactacctgc tgtcagctat tattttaagg atcctgtgat tttcttttat
      481 tttgactaga aaaaacaagg cagctgcagt aataaaaagg catatcaact agtcactcgc
      541 tggcagattt gtcaccgggg tggatacagc agtggtattt tttgttagca aatgtataca
      601 gcggaatgta atattgtaaa tctgaggtgc gctcttcaca aagggaaaaa aataagtcct
      661 tttttaggac cttgtatacc aggcggcgga ataaaaagtg aaaacctatt tgttttcacc
      721 ttatcgcagc caggcattac attttgcttt cacgataccg tccgttgtgt gcagctcgct
      781 ttgtaaatac cctgtttggt ttttaaaatt gctgctgtcc tccaatctga gttctgctgt
      841 gctaagttac tgcccgagtc ccaggctgta aa
//
LOCUS       KCLA01000592            1134 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9591upu ultra-conserved element locus uce-396,
            sequence.
ACCESSION   KCLA01000592
VERSION     KCLA01000592.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9591upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1134
                     /note="ultra-conserved element locus uce-396"
BASE COUNT          354 a          209 c          210 g          361 t
ORIGIN      
        1 acagcagtta gcagacatgc ttgtaataag atgtattcaa attcccattt cttttaatga
       61 aaaagaaact aagaatagag gagtttgctg acctctttgc attgctattc atactgccag
      121 cataaaggca caaaggcata tgaaattaag aactcagaag ggaattattc tgatgacaga
      181 ctctcacact gagggcttat tgcttttagt aaactcttgg tctcctctga gtacagcaat
      241 tgattccaat aatttgttgt cacatttaaa aaaatctaaa taattcagtt ttatgaaaca
      301 aatttaacag aagccgctgt ttatgaaacc ttaatgctct ttttaaggct gctagttcaa
      361 acagtatgtg tgatattctg tacaggatgt gctgctgaaa gggttaagct tttctgactt
      421 tcagatacaa tgaaattatg acaggaagaa aattgtgcca ttttagcatg aaaatgcttg
      481 tacaaatact gtcgttcctt ccttcttact ttctttataa tgcctcaacg atagctaaga
      541 tgacagacgt ttgacaggta tctgtaagca tacaacccag gcagctcatt aaagtttttc
      601 tttctatgca tcagctttca caaaggcaaa aacccattag cattgactat tttgcagatt
      661 agaagaatta agggcttcaa acgttggctt ataccaagca atgtcatttg tgaagtgatg
      721 tttgctttat tatttccctt tctctccctc tgaaaccaga ctgacatgac tttagctcaa
      781 cgtagggcgt aatgtgcaaa ccaaaggact ggctcaccga tgaaaagaaa cacattccct
      841 tttatacatg actggaatgg caaaaagggg agactttaca tgtactattt aggctcatta
      901 gagtactgat tatgatagtt ctccggtgta atctttaatc gactttgaca ctagatttgc
      961 cccgttacaa atcctgtcat gcaaattaag tcatttgtgt tgtttgatat ggaaagatct
     1021 gctatgaaat gaaagattag ttcacagatg aggcaccaga gactgctgcc cttgtgcact
     1081 gtgcaactga ttacaaggat gagagcatcc atttttacac tgctgttaac attt
//
LOCUS       KCLA01000593             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9605upu ultra-conserved element locus uce-7209,
            sequence.
ACCESSION   KCLA01000593
VERSION     KCLA01000593.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9605upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-7209"
BASE COUNT          247 a          176 c          237 g          224 t
ORIGIN      
        1 atggggggca gtggcggggt gctcaaaaaa ggtgatttgg ggcttggctg gaaaggattc
       61 aacaggcgat gcatagggtt ggtgcgactg ggcgagactg gcggaggggt ggaactgttt
      121 cctgccaact ctcgaagcct tctggagaaa tccatcgctg gggactcaat tgccatgggg
      181 tttaaacgca taactctgtc aaaggcactg ggatgctggg caactaaccc catttcttcg
      241 gcactaaggc gatgtggatc cagatgatga cggggtggtg ggctgaacag tggaggtgtg
      301 tttgggagcc gaccctcacc aaagccagga tgttcgcgca agatgggtcc tgtcatccgc
      361 aaaagattga aagggttgtt gtctccaagg aaattcatca gcggggactg tgcaacagtc
      421 tccggtccca gaggaggagg gatagtgatg cgtggagtaa gggaactgtt tgaagggctt
      481 gtttccaggt agatgcggaa tccatgtgtg ttctgggcat gctgaagcaa gaaccaagcg
      541 ctattaaaag gctgcttgca tgttgtgcaa atatagcttg aaggctcatc tttacctata
      601 aaagaaaaac agaaagaaca ctcaaaaaat aataacgcag agaacattta aatacagttg
      661 gcacgcgctt tattttgcta gcacatttcc tccttggcat ttctgaaaga aggatttaat
      721 tgcaatgtat tgactgatat aaattgttga acagcacatt tactcaccac acattctctt
      781 aacatttatg acaaatatca cacaaaggca ttggtgccct ggcatttata tcctctaact
      841 tgcaaataaa acgttccttt atgatgcatt aagatccaat ccct
//
LOCUS       KCLA01000594             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9621upu ultra-conserved element locus uce-4299,
            sequence.
ACCESSION   KCLA01000594
VERSION     KCLA01000594.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9621upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-4299"
BASE COUNT          140 a          128 c          115 g          136 t
ORIGIN      
        1 tcatttgccc tgggaggacg cagcagtcac tcagcagccc caggccggga taattaaaac
       61 ctttatagaa gatggggtag aaggatgaac agccttcccg cagagggctg aatccaaccc
      121 ccatcccttc ccgctcaggg ctgtaggttt tttcttttcc agagcatctt gagcagataa
      181 tcagagcgtg ctgacattca acagtaatca attagcacct actttagatt aaattgagaa
      241 tatgtaaatt gagttcctca tcaggcacca cagtcaacat ttcagagacg ccatgctctg
      301 aacatatcaa acagatgaga tgcacaagtc gttccgcatc ctacttcaaa atgggaggcc
      361 aggtgggctg ttccgagcgt ttgggattac ttttatccgg tttggtttct ttaaccttat
      421 tagccgctgt taaattagcc tctgcgagtc cttcccgatc tgagacaaac ctgacctttc
      481 tgacggaggt acttacatag agactgtgaa gaaccaacc
//
LOCUS       KCLA01000595             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9636upu ultra-conserved element locus uce-6731,
            sequence.
ACCESSION   KCLA01000595
VERSION     KCLA01000595.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9636upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-6731"
BASE COUNT           97 a           52 c           49 g          113 t
ORIGIN      
        1 gtgaaatttt tatttgaagg ttaagccaat attagcaaaa aataaaataa aattaatcaa
       61 atggcccaga gcatcacagc cacagttgat tccaagaatg tttggttaca aaatgagcaa
      121 ctgactaatt gtgtaaatgc tgttaattag ctgtgcagag cccctaactg ggcttttccc
      181 tgtaactaat aagaaatcaa ttagctaatg aagtggccat taaatgctat gctaatctta
      241 gctgggatat tttaatgttt cttcttcttc tttttttttt ttcttcttta tgatccttcc
      301 taattgccat t
//
LOCUS       KCLA01000596            1098 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9652upu ultra-conserved element locus uce-325,
            sequence.
ACCESSION   KCLA01000596
VERSION     KCLA01000596.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9652upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1098
                     /note="ultra-conserved element locus uce-325"
BASE COUNT          329 a          235 c          196 g          338 t
ORIGIN      
        1 atttactgtg ctgttttgaa tggcgaaaaa gcgtgagagc aatccatctg tctgaactgg
       61 aagcttctta taaataaaca acaataaaaa acaacacatg aaattcattt tgcccgcttc
      121 tgtttcaact gagtcctccc cagaatctaa atcaacaaga gatcagagcg tagtttgtga
      181 gtaaatttcc ctcatctgaa gcaaacaaaa atagacaaag ataaccatcc tccctatact
      241 ttatgcacag taatgcaagt tattttccac tccatttaga cttttcacct tcctttcatt
      301 taccctgttt tttacagttc aataaatatt tttccaagct ccacttgcca aacaaaagag
      361 tttagcttca gtgttactcc tctgacaaat atccttatgg tgttgcacat gtgagccatt
      421 gataaacaaa ttaaaattct gtcccagctc agagctcagc tggcccattt catcttgcgg
      481 tatgggtttg taaaggtctg ggtgtctgtc atcctcccct aaccttgtct ttgtcaaagg
      541 gatacaaaag cctgcacgct cggggcctta cgatactgat tagtgtgagt gacaaagtgg
      601 agtagcaagt ccactcagcc cttcataata aatctatcaa agagtaatag aattccatca
      661 attctgcatc atccccgagg gtcgctgtgc tgggatggaa agtgtgttcc gctgggattg
      721 tacaactgtt attattcaat tacactcttt tcttcctagt taaagaccat gatatcatta
      781 tcacttaatg aatacatata attggatctg gactctatgt ttggctgatg aataccactc
      841 actattcatt cagtctcagc tcatcttctg accatttatt acagactttt ggctgaaaac
      901 catgatgaca aagggaattt gaaattagct gagatttcat tcaatgctca gttaggcaca
      961 aaggcaaaat acaattctga cgcgtaaatg aggctgagac cacacggaga agttttgcct
     1021 aaaagttaat ggctgttgat ttctacacaa gtgcgctgag ctaagtgcaa agatattttt
     1081 caaggttgcc tcctaact
//
LOCUS       KCLA01000597             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9668upu ultra-conserved element locus uce-1239,
            sequence.
ACCESSION   KCLA01000597
VERSION     KCLA01000597.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9668upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-1239"
BASE COUNT          259 a          229 c          174 g          249 t
ORIGIN      
        1 ccttctgaag catagaaggg acttgggctc tgtgctgtct gcatcccttg gcaggcagca
       61 cacgggctac cctgggtggg agtcactgct catcaccctt catgcaaaaa tgtgccacca
      121 tgtaacctgc ctggatcagc tgtttggaca gggagacact gccctcactt cccaaaacca
      181 ccaatgacag ctttttcttc aagctttttt cccctgttcc aaactcagga aggggtcatg
      241 gggatgagga ctgtgaggct aggacagcac ctctttccca ttcagcaagg tttgattctc
      301 tttatgagca tgatccgcca atccgtaatc aagggttaat ttcacagctc actgcttcat
      361 ctagcataat atccattcag actaattaaa tctgtctaat aatgtgagtg tctttgtctt
      421 tgttctttcc attctttgtt ttacaccctt cacatctcat ctccagaact acacgccatc
      481 acactctgct tgacaagcag aatccatccc taaaattaaa acattcctga cctatctgcg
      541 atgacaaggc aagcaagctt cacagcgctg cggcccatga agggagctga cacatttgtt
      601 tttaatttca aaagagtaga aagtgaagat ctgaccctgt caatcaggcc ctgtgacaag
      661 tttaatcatt gctgccccac aaaaatcacg gctaaatagg aatgcaaata atgtatcaca
      721 gggctcttat aaatgctaat caaggagaag taatcaactg acaatttcac tgatctcctt
      781 tctgaagaag tcagtcaacg cactgtctct ggaccacaaa gagaagaaaa gacaaaaggc
      841 atagatgccg tttcccaaaa aaacctatcc tttctcaggg ctttcttttt cttctttata
      901 gaggaaaaca g
//
LOCUS       KCLA01000598             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9684upu ultra-conserved element locus uce-7320,
            sequence.
ACCESSION   KCLA01000598
VERSION     KCLA01000598.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9684upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-7320"
BASE COUNT          208 a          186 c          198 g          207 t
ORIGIN      
        1 cttgcagttg tgggggggct ggagcgggta cggcagaggt caggcgctgt cagtgctctc
       61 cctttaagtc atccgctgtc cctctgttcc cagcaccgtg aggccgcctg tcagcaggga
      121 gcataaaaca gattgtgaca cagggcagtg atttttttaa caatcctatt aggaaagaca
      181 gagtgctccc atttcctttg cagcttttat caagacttaa attgctgcca agggagaaga
      241 gggggaggaa agaacctcgc tgcttctatt ttttttacgg tttttttaag gaaagatttt
      301 gcttagttac taaattcctt cccaagtctc ctcgaagcag agatccagca gtatccctat
      361 taaattatat agagcgagtc cagtccttgg ctgtcagcgg gacccatcag tcctaattta
      421 tcgccccagg aaacacagta caattatggt aataaataat aataggattc agtacatgac
      481 aacatgaatg atggagcctc tcagaactca tttacattgc tttgtgttgc aatcaccctg
      541 cttctaatgt aatgccaagc aaatgagcct ttttgaatat tgtgcaatct attgcaagtc
      601 aactggcaca aaactcactc aataaatcat gttcaaacac atggctgcag cgacaggtaa
      661 atcaacaacg cggccgccgc acgaggggcc ggacaggggc ggtgacctcg gagtgacttc
      721 tgctggaggg gctgatagag ttgcagcagc gagcgggtct tttcttagca ggcgcctcct
      781 gctcgggtgc acacgcgag
//
LOCUS       KCLA01000599             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9699upu ultra-conserved element locus uce-7074,
            sequence.
ACCESSION   KCLA01000599
VERSION     KCLA01000599.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9699upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-7074"
BASE COUNT          325 a          141 c          138 g          271 t
ORIGIN      
        1 ttgtctgaaa aaatgccaag taaatcagac aaaagtattt atcctttctg tataatcaag
       61 tgtggtatta aaaaagtgaa ttagaaataa attaaaagag acaaaaatct gtagaaatat
      121 gcctaaatcc agactaatac aacaaacctc tacataaagg aagcagtatt acaggatagg
      181 tttaaatatc actgtaaaaa cttatctaca ttgctttatc acaaagtatc ctggcaatga
      241 tttactctaa attacatctc cgctctacat acaagctcat aaatgaagta taggatttta
      301 agagatattt tctgtttctt ttgtcaggtc tggagtcatt aaacagagat tagctggata
      361 aatagaggaa gtgattttta aactgtttgc aaacttaatg tgaagagccc agccttgcaa
      421 attatcacat ctaatcagag atgcacgctt cactgctcca gtaattgtac tagtattagt
      481 caaattcttg ttgtctcctc attagccatg aaaaggagcc tgaagatgta cttcattaga
      541 gtatcctgaa tataaaattg taaggaggaa gagatgtatt acatactgta ctgtatatag
      601 aaaaatacta agaatataaa ctatacattg aataagactt taagaaccaa acccttcttc
      661 tttcttttca ttttcatagt ctctatcccc tcttttattt gtagtgagac cacagtacct
      721 gaaaacgtaa tttacaaaag atgccataaa aaaaataatt aaaaaagcgt gcattatgca
      781 gctgctccta tttccataga agaagagagt ttaatgaaga accatgtctt tagacatttg
      841 ataaatcctt gactattgga taacaggtaa aggcg
//
LOCUS       KCLA01000600             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9714upu ultra-conserved element locus uce-7685,
            sequence.
ACCESSION   KCLA01000600
VERSION     KCLA01000600.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9714upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-7685"
BASE COUNT          202 a          109 c          108 g          163 t
ORIGIN      
        1 gaatatatgt ttatattaga tattacacgt ataacattgt ggaaggaatg tatttgaata
       61 catcccaaaa gccagttgaa gtgtaaaccc gatagccttc ctttccccat taaataatgc
      121 tgtaggaagt taaataatgc acaaaacata cagtgaccag ccaaatgctg cctcacccta
      181 tcaaacacag gtcaatgcca tcctagcagc cgtctgaaat ttcttctact gaagctgcca
      241 aatgcttcgg aagtacagaa agcctggaat tgagacagaa ttacactagc ttgtgtaaat
      301 aatcaaactg tgacctgtgg ggttaaaacc tataattgga gtgatacttc aaagagatga
      361 ctactttttc agtgctactt tgtgcagcca gataggaaga tgacttcttc agattttatt
      421 gaccagcaac gctactgcaa aagtgatatt tcaacagctg ctggtgcatt tgtgctctga
      481 caaattagag gctaaataga atcattaaag aacatcaaag gactaaatta atgcaacaag
      541 tactccaact ggatttagag tgaattaata atgcagattt at
//
LOCUS       KCLA01000601             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9730upu ultra-conserved element locus uce-1529,
            sequence.
ACCESSION   KCLA01000601
VERSION     KCLA01000601.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9730upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-1529"
BASE COUNT          266 a          129 c          155 g          232 t
ORIGIN      
        1 gagggtttgt tccagaatta aacaagggct ttccaaggaa ttggcttagc ttgctgtctt
       61 atgcaaggta gcaaaatatt ttgaagtaaa cgtcaactag ttttttaact cattttggag
      121 gaaaggtaga aaaccgatta ctttaacatg aaaaccccag ctctctacgc aaatcctacc
      181 cggtttcatt tggggtgcag taaaaacaac aaaaacagag cgttaggtaa aagttgtaag
      241 cccagaaata aataaaataa gagcatcagt catttctatc gctggggaac tttcttcatc
      301 taagcacata tgaacaattg atccttgtag tcatatatag cagtaaacat taataactta
      361 acagtctgaa gtcagtgctg aagatacgga gcattattga aagatggagt cgagcaggtg
      421 gcactttaat atgttcagtg tcatggttga ctctaaagac tagtagaatg aaattacttg
      481 aggttctaaa gatttaaaaa gcgaactcat tttgctgcac taaggaaatg ctactgatca
      541 ggctttctgt gtcccttttt tctaggctag aaaatattaa ccctgaagaa aatgacatgg
      601 taagccattc tctgaggaga tttcttgatg tcagtcttat atcttagagg cttaagttca
      661 attgagtggg tttcaagaac taagatgtgg gaaaaagaag aattgacaca ctaataatgt
      721 acatctttgc cgcaatatga aaattcaata acttcactca gtcaatttac aattcacatg
      781 tg
//
LOCUS       KCLA01000602            1000 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9745upu ultra-conserved element locus uce-4301,
            sequence.
ACCESSION   KCLA01000602
VERSION     KCLA01000602.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9745upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1000
                     /note="ultra-conserved element locus uce-4301"
BASE COUNT          291 a          174 c          209 g          326 t
ORIGIN      
        1 ggctgtcccg aatgacacca cagacgagat tctgtgtaag gctctgggaa cgtaagtaat
       61 cgtggtctgg gctgtgtgtg tttttgtctc acactagtca aacgacttta aactggcttc
      121 ttatttaaat aaaccaatta atagtacata accacctatc agtttcttac ttacatgtat
      181 gtattgtcat atatatgtaa ttttattgga atttgaaaag cttgggtttt tttcacactc
      241 tttggagcaa acaatgaaat taaattgtat agtgatctta atctattatt aaaaggtcct
      301 ggaaaggaag attacaaggt agattcaggt tttgaatcgg ttttgccatt ggtttagcag
      361 cgggtgggca ggcagatgcc tgctcagagt agaacctatt gccatttttc accattgata
      421 gagtagcctt tcagagtcaa tgagctctgt caatgtgagc ttgtcaaggc tacaacttca
      481 tagacctgag aggcggtttg agaggtcagc ccttttcagg tttgctgtga tgcaaatgaa
      541 ctttaatgct taaacaacta ttggaatttt tatgtctgct ccttgttctt ttttcttcac
      601 aaagtcattg acgagacatt cagtgctttt taaattggaa gttgcattgt gctaaagacc
      661 tagtacagat ttacggaggg ctgaaagcag ttagatcatg ttcttttcat ggtgcgatta
      721 gaatcaaatc gatttcccta cagccttcag cattcagatg gcaattttaa caaagcttgg
      781 gggctagaca agggacaaaa cgactgaact gaatgttaat tacactctgc agccttattt
      841 tcttttgatt tggagctgac tggcaactaa attaacaaaa gtgtgaccat aactgctgcc
      901 ctattttcat ttaaaaggag agcagactct aaaaggctat ctttacaaag aaacaagtga
      961 ggtctactga ttattgttaa agggcactgt ctttaaaaac
//
LOCUS       KCLA01000603             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9760upu ultra-conserved element locus uce-2587,
            sequence.
ACCESSION   KCLA01000603
VERSION     KCLA01000603.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9760upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-2587"
BASE COUNT          241 a          166 c          152 g          211 t
ORIGIN      
        1 atgtaattaa cctttactgt caccatagct tagtatgttg ctggatttgg agaatctgta
       61 tctctctgtg aagaagttcc ctcctacagg gactaacagc actcagcctg ccttgacttt
      121 tacaaatgag cttaggggga cttgcagaaa aatgtttctg ctttgttttt ttttcctttg
      181 agcttcaatt tgggagggag ccgcccctcc atgcacacac acacatgatt cactcttttt
      241 gcattcattc agcatttgat tgacgagtta attcagctcc accaaacaat gatagatgta
      301 atgaacagaa aggtcttcca atgtgagaga tattcttctc aattctttct gacaggcaag
      361 ggatggtaaa cagacaaaac agagtcaagc taggcagcaa acttgtaaaa aaaatgactc
      421 tggtaatgta caaggacagc atgcacatca atgaatactt acataaatgt ctgcaccata
      481 aaatccatcc tggtatacaa cactgcaagg atgcacacac aaagagaaac atccatatta
      541 gtgcatttcc acatgcaaat gccaccaacc cctgcacagc tgaggttagt ctcgccacaa
      601 gaacagaggg aagggaagga aggcactctt cacattggtc aaggaggttg gcagtaattc
      661 acagaagtga aactgttctg agtacgtctt atacagtaca ccaaacgctt agagtcaaag
      721 catggcagga ctggaaaata cttttgataa tatttgttct tttccttcct
//
LOCUS       KCLA01000604             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9774upu ultra-conserved element locus uce-6625,
            sequence.
ACCESSION   KCLA01000604
VERSION     KCLA01000604.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9774upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-6625"
BASE COUNT          161 a          128 c          154 g          228 t
ORIGIN      
        1 gttttcggtt gactgattgt ggattaggcc gttacacacg gcagaagaag ggaccctcgc
       61 ctgtgctata gcgttgttgg agcctgaggc tgttggctca gctcatgatg tattgtactg
      121 ctggtgtttc agctctctct ggggactgct ggtcctacta taaggtcagg agttaactac
      181 ttgtatttta gcagtgtgct gatatcaata cggctcctat ggaaacctta cttgacgtca
      241 ttttcgggtc tttgctactg tagccaagct ttagcaaaag tcaataagaa cattagattg
      301 ttgtctgtat tattacttgc cacttcctgc cagcaatcta ccaattcatt aacagagagt
      361 tttggaaatc tcgcttgatt atttatgcag tcgatagcaa ggcttgtctg cattcataat
      421 tgtttgattt tatggcctct tctttaaaca aacattgtct atggtaatgc gatgccctga
      481 tggatgggaa aggttttgtc tgtgaatatc atttagataa ttaaaaatga cagatgaaat
      541 cgcctgctgt cttgacctgt actttgttcc ctcagtgatg ctgaagagat gctgattgct
      601 gtcaatcaaa atccattgga ggtttgtaaa ttctggctgc tgtgaactct gacctccagt
      661 gttgatctga a
//
LOCUS       KCLA01000605             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9790upu ultra-conserved element locus uce-6107,
            sequence.
ACCESSION   KCLA01000605
VERSION     KCLA01000605.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9790upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-6107"
BASE COUNT          178 a          170 c          181 g          263 t
ORIGIN      
        1 ttatctcaga aacgaggtgg cgcgtgcgag taggggtgag atcttcgttt gagttacaac
       61 cccgtcggtg aagccagcga ttcccacgtg ctctaagcag aaacgagtct ttctattacc
      121 cggtgtcaga aagctcttag cgtttataaa cgctcgctcc tgcgagtgga aagtcctgct
      181 tggtaattcc cactcggggt cttgcgaggc acttttcaat catttctctc tgctaatttt
      241 ggtgtcaccc tcatttcttt ttaaaagatt cattttgagc aaatttgtaa atggccctga
      301 tgtgttctac aatccagtca attactgttt cagcctgcaa acctcctggg aaacggaaca
      361 tacatggcct gaaggtagga atttcaataa ttgtttcagt aaagttagat ggatttgtaa
      421 tgctgtgttc cacttattga aatgtcaact aaacctgcgc tttcctgagc tctgacaagc
      481 cgagtttttt agtgtccttg ttttttttag ggtgggagaa ggatttctcg gccggggctc
      541 tgctagcgct taccccaacc cactcgcctt ttcttttagg gtgcttttgc ttttggtttt
      601 aacgtctgtt aatcaggttc ttcagtttta agacgtgttt tcgcgacgtc tgtcgctgct
      661 tcaaagagtt taaccccact gcatttgggc gatttcaact cgtcgtctcc gaaaggaagg
      721 cagtgaaaat gagtgtgggg tttataggat tgattcatat gggtacctct ttttttcaag
      781 catccaaata ta
//
LOCUS       KCLA01000606             201 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9805upu ultra-conserved element locus uce-2409,
            sequence.
ACCESSION   KCLA01000606
VERSION     KCLA01000606.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 201)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 201)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..201
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9805upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>201
                     /note="ultra-conserved element locus uce-2409"
BASE COUNT           58 a           40 c           37 g           66 t
ORIGIN      
        1 cccccatccc tttatttcct aatgcttgca ggtcctccag gaagacacaa gcacttacag
       61 ttgttgagtg attaaatatt tataatcagg gcaatgagtg aggtgttgaa taataaatgc
      121 taaggttgac gtggccttag ataatttctg cagatttctt catccacaga ctctttgatt
      181 ctaaggcaaa atccttttaa t
//
LOCUS       KCLA01000607             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9836upu ultra-conserved element locus uce-2298,
            sequence.
ACCESSION   KCLA01000607
VERSION     KCLA01000607.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9836upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-2298"
BASE COUNT          252 a          144 c          148 g          260 t
ORIGIN      
        1 aaaagttgaa tcagtagctt gaaaaatgtg agttattatt gactggcagg gctgagttca
       61 gcataaacaa taggtctgag gggaagatct gactcacaga aaccagattt acaggttaaa
      121 aaaaagacaa caaacattgt gcagatttga ttgagcttca cctcaatgaa gagctgcgtg
      181 ttaaattttc tacaatgtca tgaattataa tactgaatcc agtgtcatta aattgtagtt
      241 ttttgtttct tgtcagttac aacaatttca gcagagcaca atccgtgtga aagtatgaat
      301 aaaattcagg gagtagcatc aaggacttct gagctcagga aactcagttt ggcagtgcta
      361 atttgtatta aagttgttgt tgcatgacag caggaaaaag atttaatgct tgccacctga
      421 atcaagccat ggaacattgg tttctataac tgccatgaat ttgaatcaag gccaatatct
      481 ctaaatttga aataaactga tactctgtct tgaaagaaga tacaggccac ttatgttgca
      541 gaaggtattt agaaaatgta tttcaattta attttttgca gtatatatct ttcaaatttt
      601 taggcccttt agcaccggcc tttttggctt tttctatatt ccagcaagtc tgcagccctg
      661 cagtcattta tttatcaacg tccactcttg agctaatact gatttgcgca agaccacaga
      721 tgctgctttc gctcccactc ccactatgca agcacttacc ttaatctgaa agtcattttt
      781 cttttgtata taactgcatt aatg
//
LOCUS       KCLA01000608            1287 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9852upu ultra-conserved element locus uce-1260,
            sequence.
ACCESSION   KCLA01000608
VERSION     KCLA01000608.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1287)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1287)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1287
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9852upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1287
                     /note="ultra-conserved element locus uce-1260"
BASE COUNT          260 a          365 c          256 g          406 t
ORIGIN      
        1 tccccaaccg ttttttccag aagaccatcc ttgattaggc tgccgtcctc cccacccctg
       61 atccttactt gaactgtcat tccaagagga agatgatttt tcttcagttc ttcctcctcc
      121 ccaattagaa gtattggagt tcttatagtc attccatcct ccagtatttt tggggtcctt
      181 ccattctgtt ggggtcgaga gctcacccca tccagacttg atttgattgc tttggctggg
      241 tacctcgccc cagccccctg agttctttgt ctgtgtggca gagctctccc acccctcagt
      301 tcctttatca gacttcccct cgggtcgtgg catctcttca atatcccaca cagtatcttg
      361 cttaatttga gtttggcccc agccagtatt tgaaagcact cgggggtcca aatcagtcct
      421 gctcagcaaa gtctgcaaga ctgcctggca atcaggatgc gtaggcctat atgatcggcg
      481 tccagaattg tgactgtcac tacttcctgc tttgtggtta cttccagtgc tttgacctcc
      541 aacctcactt cctgcagagc tggaagatct tccccaacag ggagcctggg aattgccttg
      601 gttttcagga agagggtggc ctttttgatt gtcccatgct ccagtgctag aatttggttg
      661 gtttggacca ctccattctc caatcttcag ttcatcagac ccagacagct gtttccattc
      721 tccctgagag accccagatg ttaatttgtt cccttcaccc catttgcttt catttgcatg
      781 ctgagagcca aagttccaag acccaccacc cgtagaccgg ttattgttat cccaagaatc
      841 acttcttgac ccattaggtt tttgaacaga agctcctttc caggagtcct ccctatcctt
      901 tccattgttc ccatggtttc cagaattgct ctgtccagag actgtatcag ttccagaaga
      961 ccccctagct gtaccccaag acccaacact cccattcttt ctttctccag tgctttgtga
     1021 aggggtgtca gtgctcctgg aagggttccc caagcccatt tcaaagggca ttcccttatt
     1081 ctccataggg tttggtgaac ttaagttcaa ggagttagtg tttccatttt ttggtccatc
     1141 agtgttatga atttgagcct gttctctgcc agagacaaag tttacacccg cattttccat
     1201 ctttgactgc tgttccctag aggtctgacc tactgtgcta atctgtgcat tggagctacc
     1261 attatcagat tctaaaggcc ctttcct
//
LOCUS       KCLA01000609             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9868upu ultra-conserved element locus uce-6779,
            sequence.
ACCESSION   KCLA01000609
VERSION     KCLA01000609.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9868upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-6779"
BASE COUNT          189 a          104 c          137 g          171 t
ORIGIN      
        1 aagaaacaaa acacagcttg acagctaata gatacccctg ccatcaattg ctgagacatt
       61 ttgtcttttg tgacgttgag gaaaagacaa ggaagggaat ggaagcaact aaaaaatgtc
      121 aaaagatcaa aaaatcaatg ggctgaagga atttgatctg tttattaggg tgtagctgct
      181 ctttctgttt gcattaagtc caagtgagtg tctttggttg ccactaaact tgcttttatt
      241 cactccctag gagatgcaat acaggcatga aaacatggct cacaaagcgg gcgtagcggc
      301 aaagtaaata aataaataaa gcaagcaagc cggggctgct ttaaatacca caaaacaggt
      361 ttattacctc agtgctgcgt attaaacaca cttacctttc tccagaaact tgttgctgag
      421 cacagcaaat ggaccatgtt gtgttgacac gggtgtcttg ttcctgtgtt accaggaggt
      481 tatttttatg tatttatttt tgaaaaagtc aataaaattg aaagagggtg agagttcagt
      541 gagcggaagt tctggcaact gattgaatgc atgtgcttgg ctcttgacag tttgcttcaa
      601 g
//
LOCUS       KCLA01000610             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9884upu ultra-conserved element locus uce-2909,
            sequence.
ACCESSION   KCLA01000610
VERSION     KCLA01000610.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9884upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-2909"
BASE COUNT          264 a          141 c          128 g          205 t
ORIGIN      
        1 cagtgataac agaagcatag agagaagggt gtagatagct attgataatc tttctaaatg
       61 tgtaataaaa aatatgcttt attacattat cccacatgaa ctgagatgtg atagtcaaaa
      121 aggaaagagt atttatcagg aaaaaattag cagatctatt gcatggcatg taaatgaaac
      181 agcaaaaaaa ttcaatacct tatctggcca ccactgcaag tcttctccta aagaaacagg
      241 actttgcaca ggcgtattct tcttgtccag gtttggttcc ccttccttac ttgtagagcc
      301 tctttcatta tcaaatgagg ctccatcaag ccaccttcgt tcacgcaaac gtaaaacgga
      361 ctcacgttca cgcaacagct cagagtctct ctctaaggga agaaggagaa ctggtatgca
      421 attgggtcac accagtggga taaaagtaag ccactctcta gtaaagaccc ttcaggatgc
      481 aactaacagc agttaaatct actcacacag attaaaaata aagtcctgac atgcaacatt
      541 caatatatta accctttcaa gtgtaagtgc tttagaatta ttaaacacaa aaataagcta
      601 gaaataaagg agtcttacag ttttcggcac tacaaaaaat gctaaagcat tttcacatca
      661 tgaggccaaa tacatttcac attgtgattt aaagttttac agtacaatat gcagagtgtt
      721 gtaatgtttt tatcaata
//
LOCUS       KCLA01000611             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9899upu ultra-conserved element locus uce-3911,
            sequence.
ACCESSION   KCLA01000611
VERSION     KCLA01000611.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9899upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-3911"
BASE COUNT          173 a           86 c           83 g          134 t
ORIGIN      
        1 tccaagataa tattgaacga ggagacaaaa attgcagtgc cagcagaatt ccccaaaggg
       61 taaacaaaac tcttaacagt tgcaaacaat aaattgtcaa taccttgtag aagcagtgga
      121 taatgaaaag ttataatgcc tatagttagt accctcttta aaagaattta cacaggatat
      181 gaaattaaat tctgtgcaca gttctcttaa tttgccctta attaaacaat actccataaa
      241 tggtgcattc agtgaccaaa tgttcagaga cagcaaaatg gtgggtccca agtcattagg
      301 aatgaaataa agtcagtccc ccgagagcca gctagaatct ggtctatcta agtgacaact
      361 gatggtttag gaaagataat taactttgca attacaaagc acagctttca ccaatgctgc
      421 ctctttcaat attatcttgg aaatgttcta ctatttttac agtgagataa aatgct
//
LOCUS       KCLA01000612            1112 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9913upu ultra-conserved element locus uce-831,
            sequence.
ACCESSION   KCLA01000612
VERSION     KCLA01000612.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9913upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1112
                     /note="ultra-conserved element locus uce-831"
BASE COUNT          321 a          232 c          248 g          311 t
ORIGIN      
        1 aaaactacat gaggtatttc agggctgtaa gtactggcta gtggtctgaa aggagcagcc
       61 ctataataac acattttcag cagatattta cagaagtaaa aagaaacttt cttgctgcaa
      121 agttcatcag atgtcaatgt ccatctgagg cagtgcttat cgtgtggcag ttcctataaa
      181 tttttttcac caccctacaa ttgcattacc cggtccacaa aacatacagt tccacgttag
      241 tttccgaatt ccagaaactt ttgtaagcag gcgagtcaga cagagagaaa aggaaataaa
      301 caaacaagaa acaaacccaa ccttgattcc acagacattt ttctcccctc catgaagtga
      361 cgggggaaaa aaaatccctt cattatgacc tacttgtcta gaaacggact ttcaacccca
      421 tggttagtct aagatttgct ctactttctc cctagggcat aattgtcaga ctgacttacc
      481 gtgtgccttt tagcctttgt tctgcctctc acgctgacat cagggaagca gtgatgtaga
      541 ataaagcagg ggtgggctag gttagtccac tgtttgtgtc gttgtgtggt gtgcagggac
      601 actctgtgat actctagtga gctgctaagc tttttttgta ggctttgtgt catttactta
      661 acgaccaatc tcattagctg ccagggtaca atgggctgat gcattttcta tgtacatact
      721 ctacacagtg accctcaagg ttgccgaagg tctatttaat cagtcaaaat gctgaatata
      781 tttgcagtaa atcacagaaa aaaaaatacg ggaccacaga ggtatctcat gagggttcac
      841 tctttcctgg gagttatttg caggtaataa agtggtaggc aaaagcaagg gcaaagaagg
      901 gaaaagggca ctcagtgggt ttgcactggt cacctttaat ttagggaacc ttgggggccc
      961 tgaatatctc tgtgtgtctg ctcgttcatt tctccacgca gttcatgcct tggtgtaatc
     1021 atgttatcac aattaaaccc ctttaaataa gaacagcagc actaaggaaa tacacagcct
     1081 ttcacacact ggggagggga tatggggggg gg
//
LOCUS       KCLA01000613            1099 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9929upu ultra-conserved element locus uce-3096,
            sequence.
ACCESSION   KCLA01000613
VERSION     KCLA01000613.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9929upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1099
                     /note="ultra-conserved element locus uce-3096"
BASE COUNT          292 a          195 c          217 g          395 t
ORIGIN      
        1 aaacctccca tatttttgta attggtcttt ccttcccagg tgctctcaga atctttttgt
       61 tacataggaa aaggtgcttg gggctgctta attttcttac cagtcctggt caggctcagt
      121 aggctgaagc aaattttctt acatgggact attaaaacct acaggatttt tttttctctc
      181 cagtttttaa ctatgtggaa gcagttcagc ttttgtcacg ctgctgtgaa aaacttctca
      241 ggatagagag ttacttttca aaatgcttgc aattattttg tttatgtatg tgctctccag
      301 ttgctacgtt taactccttt ttttcttctt tagatctctg cagcgattat atttggaaaa
      361 actgtatatc tgaacactta aatgtgtgtg agtgcaagca gttttacatt tagattttct
      421 cttcctgttt agataacaaa tctcactttc cttgtgtgct tgcactgtag gtttgggact
      481 gacaatagct gactaacatg tcctgagctg tgagagggca tagcaagaag gccttcatgc
      541 ggtaatgacc cttttcagag acaatggtca tcatggatta tgcgtttcca attatttgtt
      601 catttattta tttttttaca tatttctaaa tgaggaacct cactgcttca tggcagttgg
      661 tttgctattg cttccaattc tgttaggatg ccattttata ctagaggttt ttctgtaatc
      721 atttttagct aggcaatgat gtcgttctta aatgatttag gccacagggt tgggtatgat
      781 ggtgtgcagt tgtacatcca caaaacggac tgataaatgt agtttgagag gacttctgaa
      841 cattgtggca tttaaataaa atacaagacc ataccatgta atcagactgt gtaaggggat
      901 ttcatgttaa tcgcttcatt gacagtccct tacatccaga tggctgcagg attagtatgt
      961 gcctgcatgc atatatagta agtccctttc cctatttgta acacactgtc aaatccaaag
     1021 ggtgcagagg ttgaattttt ctaaagaaat gtattagaat gagacaagta aactttcata
     1081 atcatgagac ttcaagaag
//
LOCUS       KCLA01000614             852 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9945upu ultra-conserved element locus uce-2034,
            sequence.
ACCESSION   KCLA01000614
VERSION     KCLA01000614.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>852
                     /note="ultra-conserved element locus uce-2034"
BASE COUNT          245 a          149 c          163 g          295 t
ORIGIN      
        1 ttcaaacagc ttgtaatgtc tctaatgtac tttctttttt attttacata agggctatat
       61 tcattatgtg gttatgataa acatactaat gaattttatt acgggaacaa atttaaacat
      121 gtaaatgaga tcaaatagta ttaaaatgca aaccgtggtg aaacttatta cagcctaacc
      181 ttggcaacac gcacgtaggg atgttacaga aaggactcga agtttgctac ctgagagaaa
      241 gtcagtgcag ccatctcgca aaatcactga gcatggggat ttatgaactc ttcatttcta
      301 gtgctgcata aactctcctg accaaaaaag ttagctagaa cgctgggttt aggtgtaact
      361 ttggatggca attaaatccc tttgcttgtt ccactgaaca gtaatctgtg cataatgaca
      421 ttcaaatgag atattagcat tttttgtgct tactctttgt taattgcaga gttcactcac
      481 catggtgatg cttttgatag aatcaagcaa ccttattgac ctgatgctgc aaggcatgtt
      541 tggaaattct gctatattct cctttttttt tttaattttg gcattttgag gagtcctgct
      601 gcttttatta cattcctgac acttttgtta ataaatcatt gcaaagttaa tgaaaattgc
      661 attcaggcat atccaaaata attgtgtcct ttgtcatgct aataaattga aagatgttga
      721 tccaatgggt gagcgcgtgc ccattatggt gaagtttgtg atatgtgtgc ctgttgcgct
      781 tgtactttca gccttggcac atcattccct ttggaaatgc gtacggggaa aaccaagtca
      841 gtactttcat tt
//
LOCUS       KCLA01000615             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9960upu ultra-conserved element locus uce-7648,
            sequence.
ACCESSION   KCLA01000615
VERSION     KCLA01000615.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9960upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-7648"
BASE COUNT          150 a           77 c           82 g          149 t
ORIGIN      
        1 aataataata ataataataa atgttaatca aaaaactgca tgtgtctttc tgattgtggc
       61 agtgttgtgg tattcaatta tgcaattttc attggcatat taatcatctt ttcaacaaac
      121 aagccagcgt taattaaagc aaaccatgga taaagacatg ttgccggatc atcattccgt
      181 ttatcacagc gcacaggctg gccgttaagt aaattctgga ctgtgagatg aatttcaatg
      241 ttggcttcat cttttttgtt ggagtttgaa tgcaactcat ctaacagcaa caacaaactt
      301 caggcttctt aagagaaaga tgaatttatt tgtaattaat ggcaaaagaa gaaagataaa
      361 gtagtcgttt ggttctaatg ggaattagac tatttggagc caaaccagtt ttaaaaattt
      421 cttcatcgtt ccactgctcc actcagtgct ctgacact
//
LOCUS       KCLA01000616             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9976upu ultra-conserved element locus uce-5820,
            sequence.
ACCESSION   KCLA01000616
VERSION     KCLA01000616.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9976upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-5820"
BASE COUNT          202 a          115 c          136 g          196 t
ORIGIN      
        1 gagcactgta agagcagcca ctgtaaaatg agctgtcggc atccagaatg cagtttctca
       61 cccagaaata atgtaataag aaatgtaatt agattctctg attagcagaa cacagagaaa
      121 ttatatgagg gattttcgat tttttttgca gatgttagca ctttagaaat ttgcatggga
      181 atcttatttc acccactaag actgactttc aagcaacagt aagcacggta tagttaacca
      241 ctggagcaga aatcgagagt caatgagtaa ttattaagaa ctttccagaa tattagctgt
      301 ttcagttgca gtagtgatgg aatagtccat tagatatttc tgtttctggc agctcctggg
      361 aattgattct gaatgaaaca acgagccatt ttgatcaata ctgtaattac tcttattgat
      421 ggattgtttt acaatgatag tcatcattgc aatatgtctg ctcaggaggc atcaagactg
      481 tccactgcat gcagtaagag ccacaaatat ctgattcaaa tcaacacact attgagactg
      541 ggctgacaag cgtgaaatta attgttccac ttcatgtaag acctgcattc ttcttttgag
      601 agagtaattt gttgctgtgt gtagccggag aacagtacag ccgcggtgc
//
LOCUS       KCLA01000617             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 9992upu ultra-conserved element locus uce-7248,
            sequence.
ACCESSION   KCLA01000617
VERSION     KCLA01000617.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="9992upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-7248"
BASE COUNT          280 a          151 c          148 g          250 t
ORIGIN      
        1 aaataagtaa catcataaag gttaacggtg ctgttcttga atgccttaag cactaaacta
       61 cacagaacaa ttctagtggc tatgaaacaa atcatgtgag gtcaaccaaa gatggtcatg
      121 ctgaattcca agctctgcct tctgactttt acagacctgg ctgtatttac ctcaaaatgg
      181 aagacaattt atatggtaaa ataaccataa aatggatgaa ggtttttcag ggatattgga
      241 ggttagcaag catcaggctt tattcttaat ggaatatttt tctataaaga tcacagtttc
      301 tacagaaaat aatgacagaa tttagtatca aagatgtcag gaatgaagac cacatggtta
      361 ttgtgagaaa taacatttaa cctttctctt gtggctcatg gaggccaatg cagtctttta
      421 ttatcaacat tggcaggtga tttattacca ctgtttctgc tccagtaaaa ccacattagg
      481 ctgtgcttga tgtatcattt gttatcttca acccccctgt acactttctg catgcataat
      541 ctctttcatg taacacactt caagagaaaa tggtaaatat ttaactcacg gttccagatt
      601 catcagaaac ttagggactg aaatggattg tgccagatga tacttgatgt caataaaagc
      661 ttaagccttg caaagagtga tgtaatatat ctgaaacatc agccctgcat aatagttcat
      721 taaggtagat tctaaagtga cagaaaataa atcattaaca ggcttcaaag gagaacagca
      781 cttcacacca taaattcagg tcagctatca caataccatt tgcctgtgt
//
LOCUS       KCLA01000618             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10008upu ultra-conserved element locus uce-7975,
            sequence.
ACCESSION   KCLA01000618
VERSION     KCLA01000618.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10008upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-7975"
BASE COUNT          213 a          188 c          195 g          227 t
ORIGIN      
        1 ccactctatg cggaagtaca ggtggctgct gttacaccta ctttgatggc tttctgtttc
       61 tcctaccact taacagagtt tatttcattt tggtgcagtg cacacgaatg cagtgtctag
      121 gacagatgtg ctacctttta tagtgtcgct atagagctct ttagctgtga atccttaatt
      181 tgcagctgga ccttgaataa acagttcata gtgtttcaat agccttttgc ttatatgttt
      241 gaagattcga aactgaatgg tgaggtggcc aaggcggcgc tggcaaacga agactgtccc
      301 cacatagacc aggctataac acccgatgag ggcctgccct ttacccgctc tggcactcgg
      361 gagagatatg gaccctgctt cctcttatca accggggaat atccctgccc gcctgatgga
      421 ggaataagaa agggtatgta gctggggtcc tgtaaccatg tagttagcaa ccattttaaa
      481 taaataagag aaagtcagct gtagctgtag cacgcaatag tgcgcttgct gtagagatgc
      541 acgtttgggc tggaaaccac cacctgatgt ctgcatttgg agtttctaac ctatttcttt
      601 cagaaagaaa accctgagga gctgtaacta ccccatgcag ctacactagt cagttgagtc
      661 ttccaagcta gctggtgcag caagctttag tgggggatgc tctgcaatgt ccttaaatta
      721 gcccatcctc taaggagaag ccaattaacc tttcatagct atgaaggttt gccacttgga
      781 aagctcacag atcttagcag actctgagca gcacagactt gga
//
LOCUS       KCLA01000619             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10024upu ultra-conserved element locus uce-3421,
            sequence.
ACCESSION   KCLA01000619
VERSION     KCLA01000619.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10024upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-3421"
BASE COUNT          122 a          115 c          106 g          165 t
ORIGIN      
        1 cagacatcgc gtttcaccac tgcctccagg gattttaatg aactgtcagc tgctctccaa
       61 cccactgatt tgcctcctgc agccccacct ctccactggt cccttcactc cctcctccca
      121 tcctggctgc tcccaggcag cagggagaga ggggaattat ttattgtgtg cctgttgaaa
      181 atgaaaggct tttacatttt aatgagcact aaataggagc aaggaaatat tgttcattag
      241 ctgtaatctg tggaattgct tgagtgaact tcctttggag gccgctttaa acggttcact
      301 caagtaaagc agtttgtatg gtaattaagg gagcattttt ctgtcaacat ctgtgctgct
      361 atttataacg ctgaaggtat cttattactc caccagagaa acattacaga gggtgggcat
      421 aggggaggtt gtatttttat acatatatgt aattactgtt ttatagctga aaagcctctt
      481 ccttttcctg gtttcccttt tgctttct
//
LOCUS       KCLA01000620             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10054upu ultra-conserved element locus uce-1695,
            sequence.
ACCESSION   KCLA01000620
VERSION     KCLA01000620.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10054upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-1695"
BASE COUNT          258 a          149 c          157 g          207 t
ORIGIN      
        1 aagctaaaag aagcactcac tcaacttttt ggcacaagga gggttacttt tatagcagtc
       61 ctacaaagaa aatccaacac atgccatttg agtattgcaa ggtaatcccc actctgcttc
      121 tatctttcta tgaactgtaa tgcaaggtcc aacagccagc tttggaggca tctcaggtcc
      181 agtacatgct tttcaaactt aatcaaggga atatagaagt gtgtataaaa agatgaaagt
      241 gtctttgcct ttatacatat tggaggggga aaaaaaaagc aaaaagctag gggaaaaaaa
      301 gtaagatgtt tcataggaga aggttaagtc tgatgctaat gcttatttaa aatggtgaca
      361 gtctggagta gtgaagcctt gctgggctgc tttaatttct ccctggaata gctctctccc
      421 aaccttcggc agcacatcaa agtctctgga gctcaattaa aattggatta tattgaaatg
      481 ctctatctat ggaactgtgt gctcactaac acttttcttt cagtaatact ccagatgaca
      541 gttgcccatc ccaatttaaa cagttgtcat agagaccatg aactaaagca gcagtaacta
      601 acaatacaaa ggaaaggtaa gtggtaggat ttctgtgaat gaagggcttg gttgccagcc
      661 acagtgctgc aagcagctaa atgcagaaaa cataaaaggc tctaatactc tccacactcc
      721 taagcagaaa ggcaaaggaa gtgcaatagt aaagatttac attttttccc c
//
LOCUS       KCLA01000621             312 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10070upu ultra-conserved element locus uce-2502,
            sequence.
ACCESSION   KCLA01000621
VERSION     KCLA01000621.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10070upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>312
                     /note="ultra-conserved element locus uce-2502"
BASE COUNT           79 a           54 c           63 g          116 t
ORIGIN      
        1 gaggtatctt gcactttact gaagtctcca gggcttcctg acattcttga ctctttggga
       61 atgaggcatt ttttaatttt cccttcattt gtttagctct ttacctaatt gattttctgt
      121 gctaatacac tgaaggtctg aagaaggcag agcctcaggt gtgacagatg aaataaggtg
      181 cttttagtca ttgcttttat cttccatgtc taatgtgttg gttacagctg tgcagtttaa
      241 cagtaaaatc aatacatcat ttgctgctgg tacctgaaag aatttggaag cctgttagta
      301 atttaactat ta
//
LOCUS       KCLA01000622             246 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10086upu ultra-conserved element locus uce-1174,
            sequence.
ACCESSION   KCLA01000622
VERSION     KCLA01000622.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 246)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 246)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10086upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>246
                     /note="ultra-conserved element locus uce-1174"
BASE COUNT           71 a           37 c           46 g           92 t
ORIGIN      
        1 gtaaaatagg agtgttggtg atcagcacct atttccatca agtaatccat attgctaata
       61 tttctggaat tttaatgtag ttacaattta tagccgatca aatgtggtta cctaaattgc
      121 tgttgctagt agacagttta actgtcttta ttaattacgg tataatttaa tgtttgagta
      181 caggcacttg tgttggtcat ttttacagcc aaagcagtta tgtgccttat gacgaaccat
      241 tttagc
//
LOCUS       KCLA01000623             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10102upu ultra-conserved element locus uce-7443,
            sequence.
ACCESSION   KCLA01000623
VERSION     KCLA01000623.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10102upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-7443"
BASE COUNT           54 a          130 c           94 g           86 t
ORIGIN      
        1 ccagccgggg gtcgcagaag ctccgggccc cgacggcagc gcgggtgtcg ccgtgtgtcc
       61 ctccaggagt gccggtgcca gccctgttcc agccccacgc tcacgccgag ctgcccggga
      121 agcactgccg ccgccgcaaa gcccgcaccg tgttttccga ctcgcagctc tccggcctgg
      181 agaagcggtt tgagatccag cggtacctct ccacacccga acgggtggaa ctggccacgg
      241 ccctcagcct ctccgagacc caggtacggt cagagctgtg gtattccttg ccccttgcag
      301 catccccatc ttcgcctttt taatttcttt tactttattc cttttatttc ttttccattt
      361 attt
//
LOCUS       KCLA01000624             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10118upu ultra-conserved element locus uce-678,
            sequence.
ACCESSION   KCLA01000624
VERSION     KCLA01000624.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10118upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-678"
BASE COUNT          204 a          147 c          159 g          196 t
ORIGIN      
        1 caaattttcc tgactactcg attagaaaat gcaccaagta caggcgtcag ccgaccatgc
       61 attatttaag tggttggtgt ctggcgacaa tctggaagct gaaattgttg tggttgcccg
      121 taggaaaatt cgcactttct gggagaaatt ctttcacctt tgtgtgccca cagcacggat
      181 ctctcctcat ggcagctgta ggatacactg gaacttcgtg acctggaaaa tgtgggacaa
      241 ctgacacaag gtgaccccct gaatgctggg gtaggcccaa ttaatttaaa attttgcttg
      301 gccttgtctc ttccaatttt ctaaatcctc tggaaaaatg attaatgcgt acgctgccaa
      361 tgcgaaaata tttttgaccc tattaaagtc gaccaagggt aaaccaagtg taggctggca
      421 ttgtatcaaa ccagctttat taaatttgat tggaggtttg tatcaggaag ggacagacaa
      481 ggacattatt ttgcacagca actccctttt aaatgaaaac actgggagga atacaaagtg
      541 ctggtgtgca tcggtacgga gctgccttta acccagcaaa gtcctacccc aaaaaaagtc
      601 attactgagc ttagaatttc ctctcccgtg aaaaagtgtt gttggtgaag ttgattcatt
      661 acacgaggaa cactgtttcc cttgaactgg aaagagaacg gttcaa
//
LOCUS       KCLA01000625            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10134upu ultra-conserved element locus uce-3970,
            sequence.
ACCESSION   KCLA01000625
VERSION     KCLA01000625.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10134upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-3970"
BASE COUNT          283 a          204 c          202 g          337 t
ORIGIN      
        1 gaagccacgt gggtgccagc attccacaag cagcattggg tgctcagtaa gtccatgaac
       61 ttgtggaaag tagggaatga tactgtagtg tcacagtgtc caggtttaac caactcagta
      121 ctttacagtt cagatgtcgc aagctgtggt tttcactttc tggctatggg acattagtaa
      181 gctgaatata ccctcaatat ctgaaatcta ataatttaaa tttggctttt ctctgttcat
      241 tcagtctaag ctctccattc ttttggcagc tgggagctgc ttcctgcttt tagaacttcc
      301 tatcgtaaac tgtttctttc agggggaatg aaaatacgca gataacttgt ctttgcctat
      361 gtttttatgt ggggctaact gagcaatgta gctgttactg tctgcatcac ttttttcttt
      421 ttccctcttt tctttcccca agtataggtt actctaatct tagctttgca ctgtgttcca
      481 gatgcggcag gccagaaggc tgtcgaatcc ttgtatacag aggtatacat caagaactgg
      541 tgaatgcagc acgtatgtgg gctctcatgt aaacttgcct tcttaacaga gggctagaga
      601 ctaatttgca ctataaaaat aatgctacct gttgtcattg ccattactga acactaactc
      661 ataaacgata ccattcactc acaggttgct gtttttcttt taaaataatt ggagactaaa
      721 agtggcaaaa ccatgtcttt ctacttcaaa gcatactgta catttaaacc tgagctatgt
      781 gatgtcgttt gactaggaaa gcataaaact aatttgcatg agagttcata tttccatttt
      841 actttccatg ttttgaaact gcgcaaaagc aagattaaat ttaagctacc catgagctaa
      901 tacagatgcg tgcacacgca cgatgttact ctggtaattg gaaggataat actgtagcct
      961 gatttgcatg gcttataagt ctctgcatgg aattattagt tcaaacatag aagcatcatc
     1021 atgtgt
//
LOCUS       KCLA01000626             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10150upu ultra-conserved element locus uce-3242,
            sequence.
ACCESSION   KCLA01000626
VERSION     KCLA01000626.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10150upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-3242"
BASE COUNT          207 a          137 c          114 g          230 t
ORIGIN      
        1 ttcctactta tactttacat cacaaaacat acatgtagta ataatcacct gctcctgaaa
       61 acaacagact acaaagagag tagaacgttt cagcgtggac tgtcttttat attacagatg
      121 tcatgtgttc ataccccgtt cagctgcagt ttaaatgctt taaataaaat tctaaaagta
      181 ttattagagt tgcaaaattc catatgaaag ttggatgtgt gtatccagtg caccgctaca
      241 cacactttac actgctattg ctttctatat gcggcttcct tggccctgca agtatttgcc
      301 ctacttgttt tctacccttt tcccttcacc tgtcctgaat attgccatga atgtttctaa
      361 tttaaagcca gaggagtcag tggctgatta gaagacagga aattggagga ttaaactgtc
      421 tggttgaact tcctttactt atcagtgctg tgtaacttac cctggattat aaactcattg
      481 ggacaatttc tacagtgcac cagtacttct gttttcttag tcttgatttt tctgaaggta
      541 aaaaaaaaaa caacacaaat gggtagtttg tggctaaaac ccaatccttt ttaataacag
      601 cgaagcactg gaggtttaaa ttcaatttgt ataaatgtct cccaatatga gaattcattc
      661 agttttaaac catccaggtc tatactat
//
LOCUS       KCLA01000627             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10165upu ultra-conserved element locus uce-5055,
            sequence.
ACCESSION   KCLA01000627
VERSION     KCLA01000627.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-5055"
BASE COUNT          144 a          146 c          149 g          148 t
ORIGIN      
        1 gaatctctcc agccataccc tccactcaaa caccagggga gccgcttcgg gagcggagat
       61 ttatggattc gcagcaagcc gcttcccggc atgtaaacaa atctctccgg gctgcgggga
      121 aggtgggcct gggcagcggg gtaatcattt ttattattct gatttcccaa atagaaatgg
      181 acatatatga taaaaatgtc aggcgcgctc cccacgtcag gctcctaaca ggattacatg
      241 tcagccctta atgccgcgct ctgtttttct ttgccatgaa tggctgcatt attgctcaca
      301 ggaacttcac tgtaatatat ggtaagagac aagtagctct ttatggccag tgattattcg
      361 gtttgaatga aacctgtgat ttatgtccat ttaactgaaa agccttgtaa attcccagtg
      421 ctgcattttt cctcaataga gaatgagtca agcgaaagtg acaaccggct tggcgcggaa
      481 atgtgcagtg catcgccgtg ctgtgtttaa tacacctgac acgggggacg tgccagcgcc
      541 gcgcagccgc cttacgcggg agggagagtg gcattagcct gcccccc
//
LOCUS       KCLA01000628            1116 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10181upu ultra-conserved element locus uce-260,
            sequence.
ACCESSION   KCLA01000628
VERSION     KCLA01000628.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10181upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1116
                     /note="ultra-conserved element locus uce-260"
BASE COUNT          378 a          181 c          210 g          347 t
ORIGIN      
        1 ataaggtggg gctgtttggg taacaggata tggtgttagt tattttgctg ataattaacc
       61 aagctcctaa atgaaagaag actatttgtg gcatccctta taaaaatgtt tatctttata
      121 gatttgttga ttatagttat tttattctgg taggatgact tcagaaaaag aaaaaccaat
      181 accagagtcc ttttacagct aatgagatga gactgaatac agtagagaga gaaatataac
      241 tgaaaattgc attctgcact agctgaagct caaatacgta tttgtaatac aaaccacaat
      301 cttcttcaca tttgcagcac aaaaataacc ctcaaacaga aacattaatt gaacggtaac
      361 tcagattaat gttttgtaat attagttcac aattattact ctgagccagg gtcaagaagt
      421 atatagttgg atattcacaa agaaatgact gatttaaaaa caaagagctc taatggaatt
      481 cactagtgct tttcagtcat tccagttggc atctctatta cctgaaatga ttcacagtcc
      541 attatgggag cttccatgct aatagaatgt ctatcttctg taatacagac acatcagggc
      601 actaactgag aatctgtcac aatgaatttc atctagattt cacttcatct cttcatggac
      661 tgtaaaattt gctcttgtac aatgcctaaa tttactgtgg gtaattgaga gagatctata
      721 gatgcagcac acggtaaaaa gcgtttttcc acagatctat tgtaaattgt gcagatttgg
      781 ttcagctggg aaaagattat gaactgctgg acaccagtct ctgctaatta aatagttttg
      841 gtcagctttg aaaatatttt gaatggatca tggtgaatag aaaagcaaga agagaaacat
      901 ggtaaaatgt ctctcttgta gctagaaagg caatgaaaaa tactttgaca tttaagaaac
      961 accaaaaaga ggtgggaaga ggagtgaaca ggctccctta ccccctgtaa gacttacaga
     1021 ttatatcaag tagacctagg atatttttta tgtcttgtgt ttacatagtg caagtgggat
     1081 attgtccact taatctgact tcctacagct ctttag
//
LOCUS       KCLA01000629             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10197upu ultra-conserved element locus uce-197,
            sequence.
ACCESSION   KCLA01000629
VERSION     KCLA01000629.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10197upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-197"
BASE COUNT          197 a           98 c          100 g          130 t
ORIGIN      
        1 tataataagg ttaagtaagc ttctccatgc ttaaggaaag agaaaaagta ggaatatgca
       61 acagtgaaaa aaagcgccga gaagcagaga cataaggaaa atgtgtcaac aataaacaag
      121 aggaaatgag aaagaaggaa aagatgaagg tggaaactaa tctctatgtg tcattatgac
      181 tgccagagta ctggcaaaga agcagcatcc ttttatttca attttaatca tttctgaatt
      241 ttaataccct gctccttttg taattctcct ggcattccct atatgcatcc atcccagcca
      301 aaacaccagt gtaaattaaa tggcacgcaa ccacaccgct gatgtagttc tctcagcaca
      361 accaattgag tgaccaaaaa gcagagaagg tatgactact ttgtctcccc gtagaccact
      421 ggacaattaa gtgacttaat gttcttcaat tcctttaatt ttgaaaagaa gggcagtggt
      481 taggtaaccc agcaatatag agccattaaa aaaaaataaa gcaag
//
LOCUS       KCLA01000630             858 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10213upu ultra-conserved element locus uce-4295,
            sequence.
ACCESSION   KCLA01000630
VERSION     KCLA01000630.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10213upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>858
                     /note="ultra-conserved element locus uce-4295"
BASE COUNT          248 a          208 c          150 g          252 t
ORIGIN      
        1 cagctacacc aaccctagct tgtgtcctgc aatcttccac atcaattgct tcctggtttc
       61 tttccccatg ggccccattg ccatcagcat tgcttatcct ctgttgagtg acagagcagt
      121 aatggcgagc agcagcttct aaccccatcc tggaactagc ttagtctttg ttgcactgta
      181 tttacttctg ttttccaata tgaaggaaaa gcaaacaatg tagaaaacct ttaatttcac
      241 attttttccc agctggtaaa aatgatggct agatatgcac acatcagtat aatcatctcc
      301 taaacaaatg gcacaatgac aaaccgaggg ggcggggaga gggggagcag agcacaagct
      361 ggtgttttca atttagaaag tatgcattat ttacactgcc attattccac tcaatttgag
      421 ttcacgcttt agtcctaatt tcagtataat caaagtcaat gaatatttaa tcagcattgc
      481 ttccagaaat tgagtaatgc cattaacata atgtccccag gacttcaatg ctgattttcc
      541 tcaaaagcat gggacttcca ctcttccttc cctgcccccc tttgctttaa ccagttgatg
      601 ctccgatata aacctttgct gggtttaatg aggtggaaca catccaaaat gtgaggaatg
      661 ggaaaagcat tttccaaata tgaagctgtc tcaccaccca tattgatcca gtcccatgat
      721 agttcataaa agcaaagcat ttcacttcag tatggaaaag cctcataatg acaataatcc
      781 atttgcacct ctggagcacc tttcagcaga gggtctcgag tcattttaca aacattaatt
      841 aatcccttcc cctcccct
//
LOCUS       KCLA01000631             919 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10228upu ultra-conserved element locus uce-1899,
            sequence.
ACCESSION   KCLA01000631
VERSION     KCLA01000631.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10228upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>919
                     /note="ultra-conserved element locus uce-1899"
BASE COUNT          296 a          184 c          138 g          301 t
ORIGIN      
        1 ccttcttgca aatacaagat taagggaatt ttaaaaagaa tagaaatcct atgttgaaaa
       61 gccctcagct ttcactataa tggtaaaatc agatttagcc atttgtatat aaagtgcaca
      121 gaaacttctt cttgaactgc tttagcaaca taaccttatc atgacctttg atttttatgt
      181 gttttgatcc ataccaaatg ctaactaatg gttgaaaaga aggtgcatat atctgttaaa
      241 gttgtgtcag tattgctttt tatatcaatt aaataaatag cagacagatt cctaccaccc
      301 tttgtttagc tatatggggc tcagctgtgt tgcttctaac ccttactaca tcacttcaaa
      361 ttaccagtaa attaacagag taacactttc aacctcagag cagatttgat ccaaatagtc
      421 tttaaatgcc atttctgttc ctattaacct aaagatcggc atagcagata ttttcgtaag
      481 actgcccagc aatacagggc attaatggct aagttgtgac agcacttttc atgatgattt
      541 atgattcagt gtttaacttg attactccac tgctgactct gaatactatt tcaattagtg
      601 cacagaaggt cacatcacaa atattcctct ataatctatt cctattaaca ctaatacaca
      661 gagtaaccag agtcaccctt cttgaatcaa accattcata gcactaactg caggcttgtt
      721 taccagttta ctgctatgga cacatccgaa atggtaattt tcagtccttt gagtatcatt
      781 aatagctgta ccatgacatt gtgaataaag catccctctg ctgctgcgtg tgcattagta
      841 attatcaaag gctcagtcac tttaaatgga ggctatattt caaaaagaac tcccatctaa
      901 ataattattt cacagctaa
//
LOCUS       KCLA01000632            1050 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10244upu ultra-conserved element locus uce-6885,
            sequence.
ACCESSION   KCLA01000632
VERSION     KCLA01000632.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10244upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1050
                     /note="ultra-conserved element locus uce-6885"
BASE COUNT          342 a          171 c          168 g          369 t
ORIGIN      
        1 aagtgattat gtaattttgg aaaaagtttt ttttgtaccc ttttccttat aaaaaaaaga
       61 taaaatccta tgtaaataat atgtgttttt cctgtaatga atgttccttt cattctgcat
      121 ttctgtataa tattggaaat tctgttttta ttagaagagg cattggatgg aagccaacaa
      181 ttttttcttt taacttgata ttttgggctc tgatctttgt taaaactaca atggcatgta
      241 tctcgtacag tcagaggtca tttctatagc tactaccatt tcctatcatt tctggggaat
      301 gtttgttttc aaaacaaaga attgggttaa agcttaagta tcatatttca gaacatattt
      361 caaactgaaa ttaagaatgc taaaaccttt cctttaaagg tcagatgata tttattatta
      421 ttataaaaat catctgtgat ttatgaattt aacttcttgt aaacctcctt tgtaacagaa
      481 tatgcagtca gaagcttaac attacattgt tttcctttga caacgtatcc acgagaccac
      541 tgcagctgtt cctttactca caatagcaga ttaattaaca caatcatatg ctgttggctc
      601 ctactcaatg agtaggtctg cagtgggata gataggtaaa tcctttaaat gtgtatgaga
      661 taaaggatat actatagtag tttcataact agccagtttt gcttctgact agtcagccct
      721 atcagcaatg gttcactgac tacagaagct gtgagcttat atttcaaagg cagccacacc
      781 tattacagac caataatgcc tgaatcatag caaaactcaa atatgtaaaa gcacatgaac
      841 acttggaaat caccgtattt tgctaaaaaa gcagacagtc tgtttaaagc attttgagtt
      901 tatagagtaa ccaggaaaaa agaaggggta tttttgttgg ttgcttcatt ttataaaaaa
      961 aaaaagttca tcgctttcct taaatatctt aatctggtca ttattcactt tttacccact
     1021 gtgtattaga aatacttgta agaagcggcc
//
LOCUS       KCLA01000633            1009 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10260upu ultra-conserved element locus uce-8043,
            sequence.
ACCESSION   KCLA01000633
VERSION     KCLA01000633.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10260upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1009
                     /note="ultra-conserved element locus uce-8043"
BASE COUNT          278 a          249 c          278 g          204 t
ORIGIN      
        1 attcgcagct ctcatacatc gccagggtag cccacagagt gctgatcctc agtgttctct
       61 acccactgca taaactgcct ttgaagaaga aagggggtga aaccagcagt gggaaggatg
      121 gggcaatgtc tgccccaaca gcatcgctca gagcacgcgg gattccccgc tcagggctca
      181 ccctgcggta cgtctgcagg gcagctccag acaccctgca ttcccctgct tagctctagg
      241 agccgcatgc acaccccatg tcccccgcta tcgccagcca aaggggctct ccccattggc
      301 tgcttccgca ctcccaactc tgacaacacg agccggcacg ggacttcaaa ggaagagcga
      361 ccgcgtccgc gggctctggt gccaaaggaa gagacaaaac gggggaagag gaacaaatta
      421 cattgtcaga aaaagcgtga actttttgat tggggatgac atttatttta agtgtgcagt
      481 gacagcaggg aatctgtcag ggtaagacac ggcagaggtt tcaccgtttg ttaagggcgc
      541 catgggaatt taactaaaac tgttaaaact gacactattg gcttttgtta acacattaag
      601 catgggaaaa gtgccagtca gcatatcctc gcagcatcgg ctcggggaaa tcatctggaa
      661 gatgcataaa acggggtgtg ataataaatg cggagctttc cgcacgcgga tagaggagca
      721 gagagggacg gggctgctct gacacgaaca acgagatcgc tttaaaacag gcacctgctt
      781 tgtgatttca aaggatggga gggggtggaa ggagccttag aaaagttcag ccaagagaag
      841 caaagttacc caaggcctaa caaacggatc tgcctaagtg cttacggtag agaagaggcg
      901 aatactggag tgtgtattta tggaactggc ccgaggacaa ttaaagccct gtctgaggca
      961 ttccgctcca aaccagcctc aattaccact tcagagtttg gctggcaga
//
LOCUS       KCLA01000634             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10275upu ultra-conserved element locus uce-574,
            sequence.
ACCESSION   KCLA01000634
VERSION     KCLA01000634.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10275upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-574"
BASE COUNT          239 a          168 c          220 g          311 t
ORIGIN      
        1 agagaaatcg cccaggattt caaaacagac ttgaggttcc agagtgcagc catcggtgcg
       61 ctgcaggtat tgcaaagtgg ctgctgggcc tcttgggcgc tgagtttgct tcgctgaggg
      121 tttctaacga catttcttct tgtgctcttg aaacaggagg ccagcgaagc atatctggtg
      181 ggtctgtttg aagatacaaa cctgtgcgcc atccatgcca agagagtcac catcatgccc
      241 aaagatatcc agttggctcg caggatacgg ggggagaggg cttaagtgaa ggctgttttt
      301 atggtgtttt gtagtaaatt ctgtaaaata ctttggtttt aatttgtgac tttttttgta
      361 agaaattgtt tataatatgt tgcatttgta cttaagtcat tccatctttc actcaggatg
      421 aatgctaaaa gtgactgttc acataaacct cagtgatgtg agcctcggtg ctcaggagtg
      481 acaagttgct aatatgcaga agggatgggt gatctttctt gcttctcatg catgtttctg
      541 tatgttaatg acttgttggg tagctaaact tgtactagaa ttgatataaa tgtgtacagg
      601 gtccttttgc aataaaactg gttatgactt gatccaagtg tttaacaatt ggggctgtta
      661 gtctgaccat acatcactgt gatcaaatgt ggactttttc agagggtgaa actacaagtc
      721 ttaaccacag tgtaacttac agtttcctaa aaacgtaaac ctggcagcta tagaatacac
      781 tatgtgcatt tataatagct attttatata ttgtagtgtc aacattttta aattaaatgt
      841 tttacattca catgtgagga ctctttgttg tttggttcat ctggccttga tgcttgctcc
      901 tcttggctcc gcttggcgcc tgtaatcctg ggcagatg
//
LOCUS       KCLA01000635             255 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10290upu ultra-conserved element locus uce-2365,
            sequence.
ACCESSION   KCLA01000635
VERSION     KCLA01000635.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 255)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 255)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..255
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10290upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>255
                     /note="ultra-conserved element locus uce-2365"
BASE COUNT           82 a           36 c           48 g           89 t
ORIGIN      
        1 ccctttttcc tttttggata cttataaatg agatattata tttccataca ttttatttct
       61 ggccacatct gtgaatctaa tattgacctg gagttatctg tgatggagaa gttattaatt
      121 ttgacagata aaagggagaa gctaatatcc tccttttaca aacacctaat attaatctct
      181 agtggtgtaa acgagaactc cagaatggct tgaggtgatg atggaaatgg tatgagatcg
      241 aaatttgata atgaa
//
LOCUS       KCLA01000636            1043 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10304upu ultra-conserved element locus uce-6746,
            sequence.
ACCESSION   KCLA01000636
VERSION     KCLA01000636.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10304upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1043
                     /note="ultra-conserved element locus uce-6746"
BASE COUNT          298 a          236 c          223 g          286 t
ORIGIN      
        1 aaaccaaaaa aacccaacaa aaacaaaaca accaacccac aaacaaaagc ctggctgaat
       61 ctgctgagct agtttgctga tgttagaaac agttgttcat attaggaaca cctaatttaa
      121 tttcacgaaa gagacataac atgccagtat gtgtatgaat ctaaggtatt catttcctaa
      181 aaggaactaa aactctgtca ttccaaagtt gctcttcttt ttgacttgca gcttgcgtgg
      241 ggactgctgt ctggaagcag taactttaac tttaactcta aggctgctga tgaggtctgt
      301 ctgtgtgatc ttcggaggcg gataagggta gggagacagc tcagagcaga gcttgtttac
      361 agcaggacag aagaaaacag cgagacacaa atgagggctg acggtttcat gaagcacaat
      421 tggttgatca cagattcaat atgactgccc tgaactgagc gatgatccgt acagtatgca
      481 aaattcactt tcttgctggt ctgtgcccac cagccttcca gcagctttcc cagagcccct
      541 cagccacggc tttgagtgga accagagctg aacgcagcat tgttgtaccc aattcctttt
      601 gacaacaatc acattctttt aaaaacttca taggttttag ttgtcactgg ttataaatga
      661 ggggtttttt tcccctcgcg ctgctgccgt cgttgcagct ttcgctgctc tcccacagac
      721 cccagtccag gttctggtgc tcctggtttt cctttgtttc agttgacaac atcatgcaaa
      781 aaataaaagg catcgaaagg ttcagatcac tttttgaacc acgcggtggt tattttgtga
      841 tgtgcccaga cacttctaat tccccttgtc tctgccgcca tgcagcatgc tcaaggtaaa
      901 aaggcattta aaaacaaaat aataaaatgt aaggctttca ccagctctgg cagagctttg
      961 ggagaagatg aattgttagc agcagcaccc tttaaacttg gctttgaagc aaaggacatc
     1021 ctatttctac atgctggtgg cag
//
LOCUS       KCLA01000637             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10320upu ultra-conserved element locus uce-2208,
            sequence.
ACCESSION   KCLA01000637
VERSION     KCLA01000637.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10320upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-2208"
BASE COUNT          197 a          150 c          224 g          236 t
ORIGIN      
        1 aattctaact cgccttgcct gggattgtaa agtagattac ttcacggtgg caggttttgt
       61 ctgttgggtt tgtttttcaa gtgaagccgt tagttttggc cacgagcagg tgagctgttt
      121 gttcagtggg cacttgtttg agtccattaa aatctctggc tcccatattg ccacgcatca
      181 gagaggttcc aagtacgtgt ctgtgttcag ctacctgaac ctccaagaag ataatcagcc
      241 ttaggtcaga ctgatgatgc agagggggat agtgtggtgc gtgcagcgtg tgattttact
      301 tccttacata gcgtgtataa acgagtttgt ttgtctttgc aggtggaaac attttctggt
      361 gtctacaaga agctcacagg caaagacgtg gtgttcgagt ttccagaatt ccagctgtaa
      421 agtggaaaga atggctgaat aaacaactat tcatatatag agtaatgcat ttttgattcc
      481 gagttccgta aacacaggtg gggcttaact gatcggtggg ggttctgttc tgtctggttg
      541 gatgactgaa gtcaccagca ttttgatggt actgctctga ggttgctctt ggtgctgttg
      601 tgacacgaga ccagaaattc cagagtctcc aaagaaagct gggagagggc atgcagaggg
      661 gagagaaatc tggtgaacta ctgaagacca caagcgttgc cagctggctg tagatttttc
      721 ttggcacttg ttgcaagcac gcaaaggcca gtgatggccc cataagcagg agggataatg
      781 cttcaaagct gtttgtggta cttgcat
//
LOCUS       KCLA01000638             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10335upu ultra-conserved element locus uce-7665,
            sequence.
ACCESSION   KCLA01000638
VERSION     KCLA01000638.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10335upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-7665"
BASE COUNT          154 a          103 c          144 g          138 t
ORIGIN      
        1 gtgaggactc gagcatctac ctccccgccc cacaacttca acctctcttt ctccagagtg
       61 ggaggaaatt tatacccttt ggattcagag gaggctcctg gaggtagagc gagagcaaga
      121 gaatgaaaat gcttttaatt ttttgttggc gtcgaaatga agctgatatt gaaagtgagt
      181 aaattttaat gaaacggtgc aaaaatgaca tcatttactc agaaatcatt aatttgtcag
      241 cattaatatt tcagctccaa cattgcctgt cattcggtgc cagcgatgac tgataaatct
      301 ataaaagtgc gctgctaatt tactgaatat ttatgggcag tgtcactcgc cgagtaggat
      361 ttgaatttat ttcgctcgct cttcagctgg agagcgtggc gagtggagat aaaaaaaaaa
      421 cccccaagga atgaacagga aagctgggaa aactttggag agagcgttgt gaggagagaa
      481 ggtcgcggcg tttccctggg tcatccggct ggggatggcg gccggcggtg cagaaggag
//
LOCUS       KCLA01000639             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10350upu ultra-conserved element locus uce-6311,
            sequence.
ACCESSION   KCLA01000639
VERSION     KCLA01000639.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10350upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-6311"
BASE COUNT          208 a          117 c          139 g          244 t
ORIGIN      
        1 agtttcatat ttaatttgaa cggaaaataa taaagtgttt tctttgtatt gattaaagaa
       61 atgtaatgct tatttttact tgctttccta gtagttattc aataggttaa agggcaatac
      121 catctgtttt ctaacaggac attttgtgta agatttgcaa gtcctacagg tacctttaag
      181 catggataaa tacgcactca tggtttcagc tggatagttt ttcaccacca aaggatgatt
      241 atgttgtgtg ccttgagaca taggctataa tgtatttcct gtccctttat tgcgttttgg
      301 aatcataaac aatgactgtt tggctcaaag ccatttattc agcccaaaaa gacattattt
      361 gcacaacaaa aatcaataaa aatgttacta ggtctggcta gatactttgc ttaactgtga
      421 tatttgtctg tcactgatgg catgccatct ctcgtaggag actggggcca aaacagagct
      481 attgatccag tcatcagtga tggatactgg catttggaac gggctgctgc agagaatctt
      541 gatttaaaaa atatttctat gttttgcctg cagcagagtc aagataacct gaatgaggag
      601 attttccctt ttatattggg tttctactct tgtggctgtt aaatgctctg gaccaaagtt
      661 cattattgaa agaattaagt caatctatgt ctagccaaag ggtttgac
//
LOCUS       KCLA01000640             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10365upu ultra-conserved element locus uce-6797,
            sequence.
ACCESSION   KCLA01000640
VERSION     KCLA01000640.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10365upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-6797"
BASE COUNT          155 a          156 c          178 g          178 t
ORIGIN      
        1 cttctctgga gacgttccag acctacctgg ctgtgtgact gggtctgggt gatcctgccg
       61 tggcagaggg gctggactgg gtgttctttc caggtccctt ctcatcccta aggattctag
      121 gattccatga aatcaggacc cagaaggatg cgccgcccgc ggcagcagcc cagaacatcc
      181 gtccagccat tttccgagcg agtttttggc gttttggtgg gctctgacct gcagttttca
      241 cttccaaaat aacttgactt ttctaaagtg gtaatttcat tttcatgata atgctaaact
      301 caagccacat gtgctttaat ttaaagcagg gcttgggcgg tggaccctgc caagaaacag
      361 tagagaaaca tgcttattct actagattgc tcgaggcact cagcattttt gaatgcctag
      421 gctgaaatat agcttttaaa taagccaatc ccagagagag ggagagtagg cgaaggaggg
      481 aggggtagga gaaggttgca ggccattttc acgtgaagct tttgttgcgt tggctggtga
      541 aacgaagctg atggactgga aagagagcaa gcgcccttca ctgcctccac gggctacttc
      601 tgtatgacag caaaggtgtc gttcggtcct cctctctttt cctgacacca actggtgtct
      661 cagactt
//
LOCUS       KCLA01000641            1152 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10381upu ultra-conserved element locus uce-949,
            sequence.
ACCESSION   KCLA01000641
VERSION     KCLA01000641.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10381upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1152
                     /note="ultra-conserved element locus uce-949"
BASE COUNT          342 a          208 c          234 g          368 t
ORIGIN      
        1 ttttaggtca gagtggaaat ataaattagc tactgttttc catcttctcc tgataatact
       61 gttttgttta tatcaccatg gaaagcttta tgcaaatttc cttgccacgc catatccatt
      121 ataccttaca gagaaaactg tccagtaaaa attctcaaaa cagctattac ttgtgggaaa
      181 gaaaaagttc ttcagtcttt ccaagggcca ctgctagtaa cccgagcttc ataaagaaat
      241 cagaactgtt ctttcacaaa gggaagttac tgtgagctcc agatgaaacc aacaaagcat
      301 ggaggcttgc aagccagatc tcacttgata gtttggtcct gtgagccccg aagggttttg
      361 tcactcctgc tcctgcacac acctttacag ctgcagctac cgctgcacat gttgcacggc
      421 acgtggaagg tcattagtgg tttcagcctg cgttgctgtc atcctaaagt acaatcttgc
      481 catgcacttt gcactacaag tgctaggaaa ccagtatctt tcatagtaat gacttccagt
      541 ttacagcctt catttgttat atttcctcaa tagctgttgt gttgagatta actgcataaa
      601 tggtctgcag ctggctgtta tgaattaagg gagtttaatc aaagtatttc taatgtacag
      661 cataatgata atacatgggg gaagtactat ttaagagata atgatggctt cagaagatca
      721 ctgttgtaat gtttagtgca tatgccttca gcattgaatt tgttgttgtt ctgaatatgc
      781 ttaatggatc agtgaaaagc tgcctaatgt gggattgttt gatggggctg acagagctgg
      841 aattagccca ttgctgttta ctgcatacag ccattaagat taattgctgc cagataattt
      901 tgactgtttt tatcttcagg aaaaagtgtc actaatgggt ttataaattg gttcactatt
      961 actaatagta aggccagttt aacaggagag gatgtcatca gctaattcta aagataaagg
     1021 taaaaagtat aaagtactat atgacttgct agttttaagg gataatgtta tctaataaca
     1081 gacagactga tatatgatgc tcattaatgc tatttcccgg gctttgggtt gaacctaata
     1141 gatgctaata aa
//
LOCUS       KCLA01000642             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10397upu ultra-conserved element locus uce-5481,
            sequence.
ACCESSION   KCLA01000642
VERSION     KCLA01000642.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10397upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-5481"
BASE COUNT          206 a           83 c           93 g          185 t
ORIGIN      
        1 ggagaagagt aaacagagaa aacaaagcac aaaagttttc cagtttactt attagcacaa
       61 tatgtaattg gatggaagta gcaggtttca aaaatttgtc ttactgtaat gactataatt
      121 ttttagagat cgaaaatgaa tctgactaga aaataccatt aaactaccaa cttgcttaaa
      181 atttaaaggg taattcacat ataatgcttt tatttaatag cccaatttac aaaacgtcta
      241 aaattaatgc agatcttttc aggacaaaat cagctgtaac tgcaccaact aatttttgct
      301 catttgaact gaattattaa taagagagaa atataccata tgttcccaaa agagctggat
      361 acatttattt caaataaaat tgctgtgttt ggtggaatat aagaggttta aatgctttca
      421 gagaaatggg ttacttatat actgatttaa tagagtataa atcaggctgc ataattaggg
      481 acacagctgt ttcctaacct aaagctgcca gcttttgttg gttaagttcc tttatcacct
      541 gcatggcttt aatcagcaat aatttgt
//
LOCUS       KCLA01000643             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10413upu ultra-conserved element locus uce-6805,
            sequence.
ACCESSION   KCLA01000643
VERSION     KCLA01000643.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10413upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-6805"
BASE COUNT          270 a          221 c          276 g          218 t
ORIGIN      
        1 tcggtttcca gccacaaacc ccactccttt tcctccttcc tgtgctgctc ctttatgtgg
       61 tgcccagctg gggtttccct gggggtttcc ctggttgttt ccttctttaa tgccttctct
      121 ttgaccgtca ggagctcttg tcctttgagc ccagtcctgt accagcagac ccaacggctg
      181 ctcggtcatt aaggaggaga tcttcgcagc agtcaggctg agacctgagc cagagagatt
      241 ccgacggcag cagggacgaa aggaagggca agggttaaag caaataaaag tgatgtcggt
      301 tgtgttacgc ggggagtgaa tcatgaggat tatggaccga gcactacaca attaaacatg
      361 gaaggtacca aggtagagca cccgaacaca taaagaggat aatttcttta gtcagcaaat
      421 gggcaataac agggaagaat ttttgtcttg ggatagcgag cagttgtata aacatacgat
      481 gcaaaggctt tttcaaatag acataacacg gccatatgtt ccatccaaaa cctgcagagg
      541 gacttgggaa aatcagagtg atttaagagg gactatacac acccctgcca ccgctcggtg
      601 agcggagcgc aggcagccag aggtaaggag ggctgttaaa caaggacacg ttaagagacc
      661 cgagtgtgcc ccagagattc ttgcactgag ataatgaaag ctctcaaatg tcaccaccga
      721 acggcagccc ttcttaaaac acggcagaga cgctgcgcct tctctaggtg cggggagctg
      781 acgcggcgtg ggggatagct cttcccgaag gaggcgagaa gcccattaaa gtggctggct
      841 gtgattggaa ttacagtcgt tgcggcagct gagacacacc gaggtgcaaa ctgatttgca
      901 gaaaggagag gtgatgggtt gaaggtccag agaacaaatg tgttctgttt gctgaacgat
      961 gatctatgag caaaaacaaa ggaga
//
LOCUS       KCLA01000644            1016 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10427upu ultra-conserved element locus uce-513,
            sequence.
ACCESSION   KCLA01000644
VERSION     KCLA01000644.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10427upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1016
                     /note="ultra-conserved element locus uce-513"
BASE COUNT          271 a          248 c          205 g          292 t
ORIGIN      
        1 aacaccaggc agagagacgt aactgaagta attgctgtgg attcctgaac aggaaagacc
       61 ttctgaatta ctaaacaggt aattcaccgc taacggcaac atcgcatcca ctctttctcc
      121 gcttagtgag agctgtgttt gtaatcaccg tatgcaaagc atgcatgaca tgccagctcg
      181 gctcaaatgt gatgaagagg cttcgcaaac actgcctccg ctcacgtgaa gtagcggtca
      241 gtttgcactg aacgcatcta acctcagtgg caaaagcctt tggcacttga gacagtgctc
      301 tagcatctca caggaacgag gttctagcct tcagtgcctc agactgtaac ctgctgcaag
      361 aagcatattt tacactgacc gtgttctccg gctgctttta gtgttgcttc aggatgtgtc
      421 gatccgaggg ggttacgcac aaatcgtcgc cggcgccgca agtcatcttc ccagtagtca
      481 aggcgccaga actcacgagg acgactacaa tgaaacagag gagccacata tgttagcaat
      541 tatcaagcag catggtagcg ctgaatttct gcataaagct ctccttgttt gtgtggcttt
      601 cgcctttttt tcttcttaac ctcccccctt tctgcaatct tttacttagg tatgtccttg
      661 aaaataacaa tatcaccttc cagtctaagg aactcctttc ccttttttct tggaaggtga
      721 aatgagcact aaatacatca ttttgaaatg aattgctgac agtgtgatca gtttccccac
      781 actctagtgg catgtgctcc gatttcagcc tcatttcagc ctcagcaggg cacctttctc
      841 agtgactgca tttataaacc agaataggga aaaggctatt ataaatatgg tatagcatta
      901 cctatattaa tcaaagtcta tcccccttca tttttcttcc taatttgtgc ctttctgcac
      961 aaggtcagta aatcatacca tgaattcttg gtccagaaag tgttaacttt aatgaa
//
LOCUS       KCLA01000645            1030 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10443upu ultra-conserved element locus uce-6524,
            sequence.
ACCESSION   KCLA01000645
VERSION     KCLA01000645.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10443upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1030
                     /note="ultra-conserved element locus uce-6524"
BASE COUNT          247 a          237 c          276 g          270 t
ORIGIN      
        1 aggtgccagg ccgcaaacaa ccgcagggtc ctgggcctgg gttctcccac atgcaaggga
       61 tgataggaga gcagaccccg aggatgggac taacgttgcc tggcatgggg ggccccgggc
      121 cagtgggaac tccagatatc cctcttggga cggctccatc catgccaggt cataacccaa
      181 tgagaccacc cgccttcctg cagcaaggca tgatggggcc gcaccaccgc atgatgtcac
      241 cagcacaaac ggcgatgcct ggccagcccg cgttaatgag taatccggtg gccgcagtgg
      301 gcatgatccc aggcaaggac cgagcccccg cagggctgta cagccaccca ggccctgtag
      361 gatcacctgg tatgatgatg tcaatgcagg gcatgatggg accccaacaa aacatcatga
      421 ttccccctca gatgaggccc cgaggtatgg ctgctgacgt tggcatggga ggatttagcc
      481 aaggccctgg aaacccgggg aacatgatgt tttaagctgc taccataaga ctggatgttc
      541 tgatccttgt caagatgaga ttccaagtcc tgagggcttt tttgggtgct tcaggagtac
      601 agtttggcca tgcaataggt gaaaagagac cagaggacgc tttgggaaat ctcgaatgta
      661 tggaattacc tgaaaaaaaa aaatattcat tttaacaggt tgtttttttt ttaagattta
      721 ttttttaaaa attatttttg tggacttggg tatcccgtga cggcacctgc tttgagaatc
      781 tgtagctgta ttttgagaat tgccatttgt cacaagttgc accattctct gtatgtttac
      841 gtccttcgga ctggcttctc ccaggactct cggttatttt tggggttttt tgtgtactgt
      901 actatattgt aaaagggatt ttagcagaga ctttagtctt tggggtgaga ggagaatggg
      961 attctaggct gtttacttta ggtggagaat ccatcttcag aacttcggac tattttcctt
     1021 caactccaat
//
LOCUS       KCLA01000646             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10458upu ultra-conserved element locus uce-2943,
            sequence.
ACCESSION   KCLA01000646
VERSION     KCLA01000646.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10458upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-2943"
BASE COUNT          347 a          160 c          146 g          293 t
ORIGIN      
        1 aaaagtctct atgaagaata tgattattca ttgtccaaag ccaccaccac caccatagga
       61 catacgaccg ttaattctac aaatgacatt ttttttttta aagactaaga tcagtatttc
      121 tctaaatcta caaacacttc acattttaca gtatagcatt gtcattccag atgcttaatt
      181 aaggtggttt ctatattcaa tactaaagat aaccccaatg tgtatgggag aaaagttttt
      241 tgaccaaatg ctgttacata ttcctctgga tgcctgcaaa acagataccg tagctcaatg
      301 aaatattttt agaggtggtg tagggatgga aataattaaa atgttacctt tgccaagtaa
      361 ttcccaatgt atcctcactg gcactggggt ataaatgcct gccgttttga ttcatggtcc
      421 agtcacaaat tctcagctgt caattgaaac ctagcagtca gatatggatc gagcagtact
      481 acagttttta gtatttaaat gcatacatgc aaactagtag tgtacatggc aaaaggctta
      541 ctttcccaag aagaaacttt aaaaaataaa acaaacaaga aaaataactt attctgagaa
      601 taaaggccta cagatttact taaggcaatg ctactttaat atgctcctct attaataaag
      661 cattaaagca taactactat ttagcatata acaattagcc attattaatg acaaactcag
      721 ctggaagaaa aggaaatgtt aatattcaat agcaagttac tttaagaaag gaaataaatc
      781 tgctgccttc tttatgcaat gctctatata atgtgtatta aaggtcaaat ataatcaata
      841 tcttgcagca tgcattttgt gaaacataca agacatgcaa tttaaagaaa atttgcccaa
      901 attaaatgaa ttagaggttc ttatcttgct atttaagaag gataaa
//
LOCUS       KCLA01000647             309 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10474upu ultra-conserved element locus uce-3327,
            sequence.
ACCESSION   KCLA01000647
VERSION     KCLA01000647.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 309)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 309)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10474upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>309
                     /note="ultra-conserved element locus uce-3327"
BASE COUNT           93 a           73 c           65 g           78 t
ORIGIN      
        1 ggcgtgcagc cccgtccgcg gggagttgtc ggccggacag gtcgcgtcgt gaagtcgaaa
       61 ctataaaacc cgactccaag tgaacaaaca aggatcgatc cgataatttc agatattcta
      121 attggcttta attaaacaca cttcgttcta attaactctg aaattttagc atgctgcggg
      181 acgccggtgt ctgatttgat atcgtcagtc cagatgtcct aataaaattc aatcctccgc
      241 tcaagacttc aatattcgcc gagaacaaaa tgcaaattaa atgtaaaccc tgaagtatcg
      301 cccaaggta
//
LOCUS       KCLA01000648             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10490upu ultra-conserved element locus uce-7160,
            sequence.
ACCESSION   KCLA01000648
VERSION     KCLA01000648.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10490upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-7160"
BASE COUNT          303 a          145 c          154 g          245 t
ORIGIN      
        1 gaagaggatt ctcactaaga cattttttcc ctctacctgg aacttcataa atcagggagg
       61 gaatacctta gagtggcaac tgtagaaaac ataggaaaaa agtctcatta aaattaatgc
      121 atagtaggct acagagtaaa ttaaaagcca acaggatctc aaggcattgc aattgccgtt
      181 cctgatttaa cggtttctgc taccacaagt gaaagaaaat ctgcagtgaa aaatttgctt
      241 tttgatttac tgcaattctt cacatacagt ttgctatagt tttaaaacag acaggtaaag
      301 aaagaaagat ttattttacc tacctgtaaa ccttgaaata tgtatttagc acagctgttg
      361 ttttgtgttt aaactcatca caaaaatgca gctttaatgt aacccaccat tgatctgcag
      421 taagtggaaa caaaatctct ccttaattag tatcatccaa tcactttttt acatttctac
      481 agaacacaca ctgtgaactg tttaatggac tattatttag aagagtggca aagagcttgt
      541 aaaaaaaaaa taaggcacgt agtgaaaata aaaactagca gtgtcaatga aaaatgtgtt
      601 gcaaaataat ggaaaaaaag atgtttcgtt aagatgggct tccctggcat tttactgtat
      661 agatgaacac tgctccaatt actgccaaca atggggaaag agatagagag atatagattc
      721 attactttca acacccttaa ctgtctacca ctgaattcgc ttatctgttc ctttttctac
      781 aggacctgca tggagggggg aaggaataaa caaagaactg agtagagtga atgtgtcaca
      841 aattacc
//
LOCUS       KCLA01000649             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10505upu ultra-conserved element locus uce-1639,
            sequence.
ACCESSION   KCLA01000649
VERSION     KCLA01000649.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10505upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-1639"
BASE COUNT          248 a          173 c          126 g          246 t
ORIGIN      
        1 tataaagacc cttttatcct ttcatctctc tccctctcaa tcctttcctt tggaaccctg
       61 agatactgta gtttagtttg gaaactagga agccaaatga gtatagtcat gaggaaagac
      121 ttcagttata caatccatta aataaaacaa tagagcttgc agctgagcta ttaaaaagcg
      181 tagagcaatt tttatttcaa tggctacatt ttatttcctc ttctgagtga ctgctaacaa
      241 agggctgctg aaaggactgg ataaaaagta gacgtcagat gcaagatcca tgagttaaac
      301 aacattatta gatacaattt cataaaatct agttgctttt ctgctactag aaatcatgtc
      361 cttttgtcaa cttgtggtca catcagcact tctgttgata taatttgctc cagctgcaga
      421 gcgtagctgg cctgcaaatc aagaactaga atagggacag tcaggaataa ctcaatggct
      481 tggataatgt gcaaatcact acgcatcttg ctattagtat agtttatttt ctctcagaat
      541 atttggaaca tgaaaaattt atctttagca aaacagccga tctgacactt tgctgagagc
      601 agaactggct ggctagctta ttgtaacacc cctcctcccc acattgctca cacacacata
      661 caccccccac tctataatca tttaagtggg attatcatat caaaaccctt cattatcttt
      721 cattgaattc agaccaaaca cctaatttca gatattgttc aaggtccccc tataatattg
      781 ctcacaatcc tct
//
LOCUS       KCLA01000650             257 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10519upu ultra-conserved element locus uce-800,
            sequence.
ACCESSION   KCLA01000650
VERSION     KCLA01000650.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 257)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 257)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10519upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>257
                     /note="ultra-conserved element locus uce-800"
BASE COUNT           76 a           55 c           47 g           79 t
ORIGIN      
        1 tcccctccct gggcttctgc atcaccgaac cacaaggtgg tggtgtggtg tcattttttt
       61 taaataacaa caaaaagggg ttttgtttaa tgagcttgaa ctcacaagcc tactcatcta
      121 gtgaactgtg acttttcaaa taccaaccta ttaatgtcaa aggcaatact gaagggaaca
      181 gttctgtttg atttaaaaaa tacagacatt gtgaagtcca ctatgctcta atatctatca
      241 cctatggggc tccattc
//
LOCUS       KCLA01000651             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10550upu ultra-conserved element locus uce-6516,
            sequence.
ACCESSION   KCLA01000651
VERSION     KCLA01000651.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10550upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-6516"
BASE COUNT          213 a          110 c          168 g          220 t
ORIGIN      
        1 ataatgccgt gtcgttaaac ttggaatgca aaaccctgtt aaggctaaga ttataaacca
       61 gggcttgcag gaatgctttt tgagatgtga gttacactaa taaggaaggt ttccatggcg
      121 acgagatctc tgatgctgta ttgtatgtta atgtactacg ctggcatttg atatggaatt
      181 ttatatttga attttattac tctaaagcat aagaaaatgg catgttaagg aacttggatt
      241 gatttaggaa gaagaatttg gagttggaga aatttgttct gagcatggaa tgcagcactc
      301 tcacccgcag ctagaggtga tggagaatga attggctggg aaagagcaag agattgaaga
      361 gctaaacaga gcagtggaag acatgaggga agcatatggt acagaaggat tgcaacaggt
      421 ataattacct tacgttgctt tctacttgct atagagttag atgcaaaaat gcagagcatt
      481 acctgaaaga gcttttggtg gcagctgttc acactgcagc gtgtgtgata caggatcaca
      541 tacaacttct tgtgattgca taccacgtac tcttaattct tttatggctg tcatgttgta
      601 catccttttc tctgtatgtt gtgactaaat ttccaatcct cgcagtgact ttcttcaaat
      661 tagggatggg aagacaattt tcttcaagga aagtcctaat tattctagtt g
//
LOCUS       KCLA01000652             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10566upu ultra-conserved element locus uce-3434,
            sequence.
ACCESSION   KCLA01000652
VERSION     KCLA01000652.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10566upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-3434"
BASE COUNT          227 a          132 c          112 g          230 t
ORIGIN      
        1 cagggcttcc tggatattct tcttttacct cctttgtgtc ttacttattc ctgctgctta
       61 gcaaaggtgc tgactctatc tctctaagct ttagtttaaa tgtccaacac catttattaa
      121 tgaaagtaat aggcttttgt ttattgcacg taataatgct gaatatgact attcaatata
      181 aatctgacat ttaaattcca cttagttcca agatttggtt gatataaagg aataactctg
      241 taccctagag taaaaactcc ctcagactgc attttaaagc attgaagttt tcaaagtaat
      301 cagttttttt cagaggaacc aaattgtgaa gacatctgtt atgttattaa tttcacataa
      361 atcttaagct cctcaaggcc tgaaatgagg cttcattcaa gccgaattaa tgaaacatga
      421 ttgtaagtcc ctcgcatgga aatgctgtca tacagtattg agttgcttat aatcactgag
      481 taatcttgca ggctgccaag ggagagctac tttaaatccc tccataaaac aatatctgaa
      541 aatatcagaa cactaactat atcctggaag attaatagca gatgaaaatt tctatgaaat
      601 gaatcattct ttctcagtaa aggatacaaa catttccagt aactgcagat tgtataacac
      661 agcgcacagt ctaccatcca gatgtgagtt gcatttaagc t
//
LOCUS       KCLA01000653             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10582upu ultra-conserved element locus uce-441,
            sequence.
ACCESSION   KCLA01000653
VERSION     KCLA01000653.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10582upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-441"
BASE COUNT          139 a           66 c           66 g          112 t
ORIGIN      
        1 ttatgtaaaa tatacatgca aacaaaggtg tgtgtatacg tttcttaact actaaatatc
       61 aatactaata tgagctatac catgatctag aggatatcca ggaggcctgt catacttctg
      121 ttacttcagg taaataactg attgaccttt gtggtgtgct gatacttcac taatcagaac
      181 ctgaaatctg tataacaaca cttcatttac ttgatagaca aaagaacaat tgcacttgaa
      241 gtaatgtgat ttctaaatag acagtgcctg tcaaaaataa atgcattaga agtaaaatgt
      301 agctcaagga gacaattagc aaacagaggt gacactgtaa acaggtgcac ccattattcc
      361 caaagcttgt ggcaatatat tca
//
LOCUS       KCLA01000654             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10597upu ultra-conserved element locus uce-5756,
            sequence.
ACCESSION   KCLA01000654
VERSION     KCLA01000654.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10597upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-5756"
BASE COUNT          174 a          109 c           97 g          160 t
ORIGIN      
        1 taggtcagga atacccaaag gatacacatt tgaaggctac agatagcaga acacaccatt
       61 tagggctttg tatatacacg gacgtccacg ttctctgtaa tataggtaga tagacgcact
      121 gatttaaaca cattacatct ataccgtgtg cttcgagagc atccagatat ttacactgtt
      181 agatcacccc tcatttttag acctacgcca gtaccagctg ccaaaaaaga gtacacaaat
      241 caaaatatgt tacctttgtt caaacaatac tgctcttcat tagagaatag aaactgtcat
      301 gcttaatctt ccaggaacca agaactagta cattcttgga tcagaggtgg cttgaaatgg
      361 tttgaggcaa aactgaaggg tattgttgaa gtaaatcttg ctgagaaaca gaagcacgtt
      421 gatggttttt aacatctttt acagatttat tatgtctaat atttttatga tatcgagtta
      481 tgcattccct cctgcactgt cagcctctgt aaattacaga atcacagaat aatcctgcct
//
LOCUS       KCLA01000655             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10613upu ultra-conserved element locus uce-1600,
            sequence.
ACCESSION   KCLA01000655
VERSION     KCLA01000655.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10613upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-1600"
BASE COUNT          249 a          156 c          121 g          224 t
ORIGIN      
        1 tttatcgcaa gaagcacata ataattgtta aaaaaaggca gagttttacc ttcttgcctg
       61 ttacaattct ctcacctctt gtctttctaa ccatgctgca agtctgtcaa gaatagctcc
      121 aaaataaatt taacattgta attattacaa ataagtcacg ctggcatttg tgtgggaaga
      181 cacccccctc cccgcacgcc tctaccacgg tggcaaactt atttcaaaaa ttctgatgaa
      241 acgctttgta aattttgtta ttctgtgatg ataataaatc attatagcct taaacacttc
      301 tctagcttgg agcctcagtc acaaattatc ttgtcattct gaccaaaaca ttctccaaaa
      361 aagcttgaca agtgctaaaa cccagaacat gaaaccatgt gttgttgtga aagcaagatt
      421 cagaaatgtc aattaattag attaagaggc tacttttagc tctacttgtg ttgccaaata
      481 acccttaaaa tatgcatagc agtggaagtc tacctcagca atacagtact tctgtgcaaa
      541 ataaagacaa tggatctggc taatagaggg aattattgta tctgtcattc aaacaaggag
      601 aatcatctag aagcagaagt ctttctttcc tttccactgg gtggattcac aagcctgaaa
      661 aattccacca cttacgagtt taggctcacc cccaaaatct gattcagatt agaaaatgga
      721 aggtaaatca ctattataca tctctgtaag
//
LOCUS       KCLA01000656             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10628upu ultra-conserved element locus uce-449,
            sequence.
ACCESSION   KCLA01000656
VERSION     KCLA01000656.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10628upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-449"
BASE COUNT          187 a          131 c          157 g          248 t
ORIGIN      
        1 tttccctttc tgtgggtcta ggggagaaaa ggtcctttat tcttcaggaa cttttctgat
       61 tttaaatatg tgcttgtctg gtcataagga gcaaggtcat tcctactgct cagggcctgg
      121 gctttgtgct gctgttggcg gagcttctct cctctctcct tttcctccct ccctctatct
      181 ctccttttct ttttctcctg aggtgcagat ggccacattt gcaggttaac tggaacagct
      241 ggaggcacat tattagcttc ctgctgctaa ctcatatttg cttagaattt ttttttttaa
      301 cagcaacata atttacaagt agtaggccag tgacaaagct ggcatgttct aaatccgcat
      361 ctgatttata taaggctgct gcttatcagt gaatgaagtc ataattattg ctttgtacca
      421 ttaaatagca taaatatata aactgttata caaattgcag caaatgtttc ctctagggag
      481 ctctagacaa aattttaatg tagtgcattt gtctgtggtg gcagtttcta tggtatataa
      541 taatgttgat aaattttact gtagcaagtg acattttata acattaatcc tagtggtaaa
      601 aatctgatga atactacagc ggggctggtg ggtgcaggaa gaatgagagc ttttgacact
      661 gagtgaattg attgagtagt gctttaaggc tccaaagcat taggacaggg cagagatgct
      721 gga
//
LOCUS       KCLA01000657             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10644upu ultra-conserved element locus uce-5867,
            sequence.
ACCESSION   KCLA01000657
VERSION     KCLA01000657.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10644upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-5867"
BASE COUNT           62 a          149 c          120 g           71 t
ORIGIN      
        1 gacgcctcaa cccctcacga acctggtgta gcgcagtgag cccgtccaca ttggcgtagt
       61 tgatgtcagc gccgcgctcc agcagccgca gcacctcctc ggtgtcgccg ctggagcagg
      121 cggccaggaa cacggcgccg tcgtcgaact tcaccttcgt cttcttgcgc ttcaccacgg
      181 gtggctccag gtcggtctcg gagccgatcc agcgtttcag ctgctcgttc cgcttctgct
      241 tggcgtccgc catcttcatg ccccgctcgc tcccggaccc ctccgatacc gccgcgccga
      301 ggatagactt ataccgccac gatcccacag cgcaccgcgg catcgctcac tcacccgccc
      361 aggcggaggg cgtagggcgg gagggaacag aggattgggg cg
//
LOCUS       KCLA01000658             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10660upu ultra-conserved element locus uce-7496,
            sequence.
ACCESSION   KCLA01000658
VERSION     KCLA01000658.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10660upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-7496"
BASE COUNT          156 a           81 c           93 g          190 t
ORIGIN      
        1 ggctatgcat attggcaaaa gaactgtaaa cctataatta ggatggtgtc agtggctgta
       61 tttgttcaaa gtaactcaca gggaaacatt gatagtatat attatatatc aaattattat
      121 ttgtttttac atatgaacac acacatacca gcacagttca tttgttgtat aatcctatta
      181 attcattgtg ttcttgtatg ttttaggtgg agaactcagg ggatccatgg gaaaatttcc
      241 aaaataatca accactaaca tattgggaat gtgtttattt actgatggtt acaatgtcca
      301 ctgttggcta tggagatgtt tatgcaaaaa caacccttgg tcgccttttc atggtcttct
      361 tcatccttgg gggattggta aaaacaattt tttccagcta ccttagtact tcgtcttgta
      421 tatcttaatg ttgtaattaa ataataatgt tatctgcttt tttctacaga gaaatgtttt
      481 ggcagtactt atcaaatcag tccactttag tagagtcaga
//
LOCUS       KCLA01000659             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10690upu ultra-conserved element locus uce-1618,
            sequence.
ACCESSION   KCLA01000659
VERSION     KCLA01000659.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10690upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-1618"
BASE COUNT          203 a          142 c          160 g          203 t
ORIGIN      
        1 atgtttcttc atactccagt gccagtgcat gcgttgaaag ctgtatagaa ggcttagtgg
       61 aaagtactgt ccaggcttga ataggcagat ggagctcctt tcacacactg accgactgcc
      121 ctactggaga gcagctgtga cctgaagaaa tgtttcattc ttgaaagaat tctttttatt
      181 gagtggaaca tgtccgaatt ttacaaatct tcaccaaaaa agtttctcgt gaatacttgg
      241 tcaaagaagc ctgaggaaaa tgtgtgccta atcctattag ctgacttaat ttagaattat
      301 taacagcctt gatacacagg atttaacaca atctttctag cagggtgtga tgtaatctat
      361 ttttgttcct cagctagcag atggcttacc tttaagtaat ttccaatatg ttaggagatc
      421 aaaagccatc ctcacgccac agaggcagta atcattcctc tctgctgggg gttgcttggg
      481 acggtgctgg ggatatgcaa aggctgctgg catttccaaa catagaagcc cgacatttct
      541 tcagactttg aagttaataa tccttcagaa gttgaaaaac tgaaagattt tcaaaacctt
      601 tttaatgttc tatatgccac acgctgaagt aaatatctgc cagtaatcgc tgcagaccgg
      661 cgctaggaag gggtgcagcc atcatagggt gactgcaggg agcggagg
//
LOCUS       KCLA01000660             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10705upu ultra-conserved element locus uce-1878,
            sequence.
ACCESSION   KCLA01000660
VERSION     KCLA01000660.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10705upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-1878"
BASE COUNT          252 a          173 c          177 g          244 t
ORIGIN      
        1 tagtagtttt tcatgcaaac tattgtttgc cgtaattgtt gtttcaacag ctgttttcat
       61 taaattgtaa agctcattgt gtctaatcct ttgagcccca ctattgataa caagtatgca
      121 ttggaactag ctttagagga agagagctcc tgccaagcta gaaagcagtt gtgaagttac
      181 ttgagaaata aggcactgca gcgggactgg ttgtgtagct aatccattag tcttttcaaa
      241 agaaccttgc tctgcaccct tatggctaaa ttgacccaac aacctatcaa tgcctttatt
      301 tgctgagtgg ttgtccatga aaagtctctg tgctggatcc aagctgtaat caaagcctcc
      361 atcagtacca gggccttgat ggcacaaatg gccaaacttt cgatgaggct ggctggcttc
      421 cagccacacc attttgatga tacaaagaag ctgtgttgtg ctgtggaatt aattttcttg
      481 tttacttcct atagaaacaa gagcataatc agcactcagt gcaacggatc agactgctga
      541 gttgttgaca gaagcttgga gaggcttgcc agctttccac atgaaacact ggttttattc
      601 taatacaccc cccactgtct gtggccccgc caattgtagc acatcagaac agacattgag
      661 ataatgtccg tgaagtatca tgatatactt tgatgaagtg taacagtttt taaaggattt
      721 ttgtctgtgc caaaatgata gagacagctg actaaaaatc accccatcaa aatcaaggct
      781 gatgaacagc aggcaaagac atattctttc acagagaaaa gggagaagaa tttacagcct
      841 aagatt
//
LOCUS       KCLA01000661             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10720upu ultra-conserved element locus uce-2431,
            sequence.
ACCESSION   KCLA01000661
VERSION     KCLA01000661.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10720upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-2431"
BASE COUNT          259 a          141 c          150 g          217 t
ORIGIN      
        1 agctgctgaa ggttattcag caggtttttc cagacacagt ggattcctta gaaaacatcc
       61 tggaaaaaaa gcacaatgga atgaataggc cctgcccttt cagagaacat cgagctgaca
      121 tgtagcttgc taaaaaaatg taaatgattt aaagaagggc taagcagcaa tgtacatcaa
      181 gcaccattat ttcatcaccc actttaatca caggctgctg ttcagaatgg cttgggatgt
      241 tggttgttac agaagagatt tctgtaccat tattagtacc tctgaacaaa tgcagcgagc
      301 aggggaaaaa aagaaggggg aagacagagt gagcgcaagg aaaatgtagc agcggttaaa
      361 gcatagttta ataactccaa tctcagtcac ttttttcata tgtattgtat gtgcaagtcc
      421 atagtacagc ataatgtgtc ataatttggc ctccaattct gacagcactg cttgacttgg
      481 gcattaaatc attgccccga ggaattcaca ttctggcaat tcctgatggt aggactgtca
      541 tctcctccca cacatgacct atcatttttg acatgattga atcaaaatta gtcagtacat
      601 ttagatgtaa attagagaca tccaagaata ataatgagca caaaaatata gctctgtgta
      661 attgacatgg caacagctta gtatagtctt ccacagtatc ttcgaaatta ttaatatcat
      721 gataacagaa atactgtatc aaaaaagtga gaaaactttt ttttctt
//
LOCUS       KCLA01000662             179 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10735upu ultra-conserved element locus uce-7782,
            sequence.
ACCESSION   KCLA01000662
VERSION     KCLA01000662.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 179)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 179)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10735upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>179
                     /note="ultra-conserved element locus uce-7782"
BASE COUNT           50 a           42 c           41 g           46 t
ORIGIN      
        1 ctcaaagctt caaatggaat ccggagaggg aatttctcgg acaatctacg taacaactat
       61 tgcatatatg gtaatgctat ccgtcatatc gcaaggctta caaatatata tacgggccgt
      121 attcagctgg gggctgctgc tctgccacac acagtctctt caggttactg gcgcgagaa
//
LOCUS       KCLA01000663             964 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10750upu ultra-conserved element locus uce-1611,
            sequence.
ACCESSION   KCLA01000663
VERSION     KCLA01000663.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10750upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>964
                     /note="ultra-conserved element locus uce-1611"
BASE COUNT          317 a          185 c          148 g          314 t
ORIGIN      
        1 attctatgac actggggttt gtggggactt gcaagttctg tttgcttgtg tccacattaa
       61 acagcaaatt gaagactatg cttctctgtg gaaattcagc tttatttcag agcaaacact
      121 tcttcaggca gtgctgcctg tgttacacaa ctccaggcag catccctcat aaagcaatta
      181 tatttttact aaatgcagtg aaagccttga aaaagtttac ttgatgtcta accaagcaat
      241 gctgcatctt caaatttgaa ggagacctcc gaaagttagt ttttattatt cttcatttaa
      301 gtattatttt ttaattgcag catattaaac ataaaatctg gtacaatctt tacaaataaa
      361 taggacctaa ctataaatgg gccctgttgt gtttttatct ttgacaagca agtaattgct
      421 tctcaaattt atcagtttgt ttatgcaaaa accatttacc aagcctagct caaaagcatc
      481 aatttcatca ttatcatctt attaatttag ccaagctata acacagctga ttattcctga
      541 gtaatatcct ctgcagcaca tcatgtgtgg caaaaccatc tgtacagtac ctatttaata
      601 aataaaccct cggctaaatg tctctgttta ttgagaacta atgtttatag aaaatataat
      661 ggaactcaat aaataactca gcttcatcaa cctgcatatg aatcagtgcg aagaacgctg
      721 acatcatcac ctttcaagta ccagagaaag caaaattacc caaaagagct atagagtcaa
      781 tattaaggca ttaaaactgc aatgaaggca tattaatgct taaaacttca ttgttggcag
      841 tagaattgcc accgcggaca tattttataa ctctaagaat acttaggctt tatgactgtt
      901 cctttgttga gtgccttgct cttaatgtag ttttccactt taaataaaaa aacccctaag
      961 atct
//
LOCUS       KCLA01000664            1168 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10766upu ultra-conserved element locus uce-7864,
            sequence.
ACCESSION   KCLA01000664
VERSION     KCLA01000664.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1168)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1168)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1168
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10766upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1168
                     /note="ultra-conserved element locus uce-7864"
BASE COUNT          396 a          204 c          242 g          326 t
ORIGIN      
        1 caaaaagaaa acatgaggct ataatttcta tttttctctt ttttctgggt ggtttcagca
       61 caccaagacc atttaatatg tcctttgact tcctaaaatg ccttcaatat aacatgacag
      121 acaatttcag tctaacaata aaggaaatca aaacccataa tgcagaatca tccagctctg
      181 ctgggatttt aaaaaaacat gccctttaag gaactttcaa aataaatgaa atgttttatt
      241 aattctaaca gcttaatgta cagaactaat agaggtgtag tccatccatc ataaaaatct
      301 ttgtcttctc ccctaatgca ttaatttctt tatacagacg gattgtgtgg ctatgtttgt
      361 atgacacttt tttcccactc agatcaattc taagacctct gaactaaaga aaagcatctt
      421 tctaaatgga atactaattt tagctaagct gcttttgaag gctatgctct ttaaaagaaa
      481 gccaaagctc catacaaaag gtagggagaa gagggagagt gtagctgatg aaatgcaaat
      541 gaggcttttc tcagacagct ggctgctttg ggatgacatg tgtgatgaat ggctcttaaa
      601 acatgagcag gcatcaagct ccaattcagt gtcagactgg caaaaacagc agcattactg
      661 gatgcttcct ttaattaatg caacactttt gtattagtcc ggacactgcc gataaatggg
      721 aaagaactga tatcagtggt aatatcagaa atctttcaac cttgaagctg ggatgcatta
      781 gccaaaagct gtggtatcgt aaaaggttta attgtatttg taatgtacca gtgcaccatg
      841 acaaaaatgg gagatagcgt aggcaagaca gggtaagcca gtgataaatg agtgtgagtg
      901 agtgattata aagcaagcag gagtgtgaaa acagacaata gacagcaaag gggaagggag
      961 caggaatggg gggctatgat agcaacagct actccaatgt gaaaagcagg taacataagg
     1021 aatctggcta tagttttgag tgaagctaca agcacaaagc agtttaacat aaatctttcc
     1081 ttctatgtag gtttcattga tggaagtgag atttaccact gcacctactc ctaacaaaac
     1141 ttcatgggaa aggctttgct agccaggt
//
LOCUS       KCLA01000665             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10782upu ultra-conserved element locus uce-2416,
            sequence.
ACCESSION   KCLA01000665
VERSION     KCLA01000665.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10782upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-2416"
BASE COUNT          190 a          113 c          139 g          195 t
ORIGIN      
        1 ggtgagaaga tggaatttta cttgtaaaag gctttacttt ataaagcggc agcagaaaac
       61 tgttcctctg cttccaaaga atagtggagt catcgaaaag ctcttccact ctttgaggga
      121 gacttcccct gcaccagcaa ctctcagccc tgtgaaattg agaagaacaa tgcacaaacc
      181 cgaaaggccc agatacttgg gttcatcagt ttggttctgt tctgacagaa atcattacga
      241 gtttgataga tttattttga aagacttgct tcaatattta aagtacatct attccagcat
      301 tcctcatttc aagctcggct gtggatcaag atgaaagaaa aattaaattg tatattgaag
      361 agctgttaat tgaactgtgc tgcatttagc aagggagcat cagctccagg cagtcaatac
      421 tacagaggat ttttaatgta ctgtatcact agattgtcag tttgtattgg agaatgcaaa
      481 cagtctgctt cagctggcga taaagccctg gaaactttgc agtcgttgag gggagaagat
      541 gttatttggc tttgataggt tgtgacaaag ctgttgatag aaccaggagc aacattttat
      601 gcttttgaaa tactatttga ctgccttttt cttgata
//
LOCUS       KCLA01000666             995 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10796upu ultra-conserved element locus uce-2312,
            sequence.
ACCESSION   KCLA01000666
VERSION     KCLA01000666.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10796upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>995
                     /note="ultra-conserved element locus uce-2312"
BASE COUNT          328 a          194 c          171 g          302 t
ORIGIN      
        1 tggtctcggt ggaaattaaa caagttcaac tagccttctc aagtagtcaa attcaaaacg
       61 catcatcatc tcctagttag tacaagtcac cgccatttct aacaaagtaa tgaaggcaca
      121 gctagtgcaa gcagacttaa acccgttcag actattgggc tgaaaaatac tttggttggt
      181 tcttcaggag agagttttct ttaaacaaat attggtctca gtaaacagtt ctggtaatct
      241 tcacagctgc agtctaatag ctacatgaca aagacttcac aagaaccaaa ctatgtagca
      301 atgaattaac attcatgctt taagggattt actgcattct acatattggc agaaaattat
      361 gctgttaaaa tgctaggtag atagaaccta cattttagac tggttcttat gagtttgatt
      421 tcttttttta acaaattggt tacttaattc taccaagata caaaacataa ggctgtaagt
      481 aactaatagt tgtgtttagg ctattacagt gcaggtaatc ctcaaggcca cgtacacact
      541 gcttcactgc tgcttgcatt ctgctgggtt ttgatccttc tgttgaaaac atgagtttac
      601 tgataccaat atttgaacaa atctaataac attgctatgc ttcctttctc aaatatcaat
      661 attcaagttc ttctttcatc tttcccttaa atagtcacct agtaataaca cagtccttgg
      721 atgtggctgt gtggatagtg catttatttc agccctgtta atgcctaggt gtatgactta
      781 aatcagaaat ctgttcagaa ccaagatcac tagaatactt cagcaacact ggaagaaaaa
      841 ggagagttac gcctcataac aataaaccca tctcagaagc atccaaaggt tcgcaaaagt
      901 aaaaaaaaga taaacaaggt catagcctta cttcactgat gagcggtgca atgaaacact
      961 aaattacgtt gttaacaccc aggaaacatg ttctg
//
LOCUS       KCLA01000667             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10811upu ultra-conserved element locus uce-6706,
            sequence.
ACCESSION   KCLA01000667
VERSION     KCLA01000667.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10811upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-6706"
BASE COUNT          249 a          109 c          163 g          264 t
ORIGIN      
        1 tcgtggtagg gttcaggtag attggtatag ctgtttgaat agcttgcgta agaattcatt
       61 ctagtttttc tttgcaagca taaaattata tgcagtgttt atcagatatg aaataccaat
      121 ctggaaacag aagtaaagcc aactcaaatt taaatgttca agaatatatt gtccaaagta
      181 gttgagaatt gggggagtaa gtgtgttttg attaagtagg atgtgacttt tgctaatcag
      241 ttctttgcca ctgtggagtg ctttcatagc ctgcagcatc tgccttccaa actttgcttg
      301 ctgatagatt gtgctgcagt ttgtttagca acagctgttg gattcgagtt ctaatgaatg
      361 aaaaattgat gattaacttc ttacctcctt taggcacata gagatgaaat ccagcgtaaa
      421 tttgaagccc ttcgtaatag ctgcacagtg agtattaaat atagatcatg gaattatttt
      481 gaaatcgaga ataaggaaac aaacaattta cttatttaat tcttaatgac actagttcct
      541 aatgtggact tctggcttca aggtgatagt aggagctaga tggattggat ttgataattt
      601 ttaggtttca tgtaaatctc aaatttgagg ttttagacca gtcattaaat tgaaactatt
      661 cttctttttg gagaagaaag taaattaaaa tatctcattg cagtgcagct agtaagaatg
      721 gtgtagcagc tgcaaaaaac aattgtaggt aaggatcttt tctgctcata aaagaaaaga
      781 tccgc
//
LOCUS       KCLA01000668             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10827upu ultra-conserved element locus uce-4721,
            sequence.
ACCESSION   KCLA01000668
VERSION     KCLA01000668.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10827upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-4721"
BASE COUNT          132 a          214 c          207 g          167 t
ORIGIN      
        1 caggttgcct ttgcccctgt gatcctctcc tgggaggtgg cttttgaacc cctgctgggt
       61 aaaggcagag gaagcagcgc cttgtgctgt gtctgttaac ccccccttcg ttccccccgc
      121 agaggagtac gtcacctgcc acacgtgccg gtccccagac accatcctgc agaaggacac
      181 caggttatac ttcctgcagt gtgagacctg ccactcgcgc tgctccgtcg ccagcatcaa
      241 aaccggtttc caggctgtca cgggcaagag ggcgcagctc cgtgccaaag ccaactaggt
      301 cgctcatcca gcctggattt tgcgaagggc tgcggggaga tgagactgca cgggctcgcg
      361 aggaggtggg ccctccggaa acggggcttt cagtcggcct gcgagatcct tgcgaggggc
      421 aggtcctcgc gctcttcgcc tgcgtttgct cggtgagttt gttttaccca accgatgggg
      481 aaaggaggtg ctttttaacc ccttcagact cctgtaaaac acgagataaa ttaaagagtc
      541 tctaacagtg agtggcttcg cttcggactc ttccttcagc ttcctctttc ccgatggctc
      601 ccggggacgg ttgtcccgac ggctggactg tgcccaggac ccagaaccca gcctgagatt
      661 catttgcttt tgcctcagag ggtgattttt agtcaggctg tcctgaagct caggagcagt
//
LOCUS       KCLA01000669             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10843upu ultra-conserved element locus uce-454,
            sequence.
ACCESSION   KCLA01000669
VERSION     KCLA01000669.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10843upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-454"
BASE COUNT          189 a          101 c          108 g          167 t
ORIGIN      
        1 tccaagtaca aaggctgaag aacaaaaaga gaacgggcag gtagcaagaa cactctgtag
       61 ctcggtattt ctttaatttc acgtaaattt tgctaagtaa atatgcctta aaagtgaata
      121 aaattttatt tcactttaac aagagaatat aaaagttaaa aaggtcactg tagtaataga
      181 ctaatctcaa ttaccagggc agccggtgaa acccacaact cccacctaat ctcattcggt
      241 gcacacgcag tgcaccgtgt gatttccaac acggctaaat gaaattataa agcagtgtta
      301 aatttattaa tcatttaatt agctaaatgt tcctgcaact actcgtgaga tgaatggcat
      361 gtcattttct aatgcaattt gcctctcagc caggcagggt caggagggaa gctactggca
      421 tcttaaatga tcttttttat attgcacctt ctattaaggg acagtgtgat atcgcttatt
      481 atatttgagg tttgtacaca gggccaggga gttttctagt tataataaca ggttctattt
      541 aaaccaaaat acaaatggtg agagc
//
LOCUS       KCLA01000670             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10858upu ultra-conserved element locus uce-6718,
            sequence.
ACCESSION   KCLA01000670
VERSION     KCLA01000670.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10858upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-6718"
BASE COUNT          216 a          178 c          171 g          254 t
ORIGIN      
        1 gggcttaagc ttttaaaact ctcacacctg cagctctcca gaaccctgga agaaaacaca
       61 tcatgccttt atccactgcg catatttaga gtaattcagg ggaggcaaat aggatccggt
      121 caataaagga gctccttgtc ttccaccctt acatccttct catgaatctt aaccgaggga
      181 aataataata agtgacagag gaggtttata gtcctttaaa taagcaagtg agcctcctaa
      241 agctgcgagc agccttctca gggtatcaaa aataataact ggttgtgcag cagtgcggcg
      301 tggaaacaca ggggtataag atatactgta ctttaagctc tgtttgatga atctgagcac
      361 agttcctggg ggatagatta ctttaaacca tgctctttta ctttctaatc ctgacttgat
      421 ttgatttgta ctttaataca gctgcctggc aattcgacgg caaatagaga ctatttatgt
      481 aatcacgttg taagtagcgg gacgaggaga aactctctag aacctttttg gaaaagagtt
      541 tgttgtactt ttttatttat tgaacagcag ggctccgggc ttttcagtgc tcattataat
      601 tggttttctg cttgaacttt caaaaactgt catgtcaata ctcaaacgga atttttttgc
      661 ttactgcatg gctgtgggct ctcttccctc ccgtgctact tgacaaagtt cttgtaatac
      721 ctcggaggca agttctagag ctgctgtttc acaacctgga gggcagggtt attctgtcgc
      781 ctccttgttc ttgttcccct tcccacaatt ctccacagc
//
LOCUS       KCLA01000671             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10873upu ultra-conserved element locus uce-6970,
            sequence.
ACCESSION   KCLA01000671
VERSION     KCLA01000671.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10873upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-6970"
BASE COUNT          267 a          193 c          199 g          257 t
ORIGIN      
        1 tgattggact tcttaatgtt ccactgtgga gctctaaagt gaccaagtta aagtgtatgt
       61 gcaaacatca gggctgaaaa taagtagaga attaagcaac ctacctgcag agaatggatt
      121 ctctcgctct ctttactctg gagagcagaa agtagctgca ggtggtgtta aatcccattg
      181 gtctcagtgg attgcagcct aagctattat tgtaggcaag ggcattaaaa gaaaaacctg
      241 gctcttagag tgagacacag ttctcactgt ttattttctc ttggttattt ttgtttttca
      301 gcttgcagca ctcccccagt caacatgaaa gtgcagcctg tgaacaggac agcattactt
      361 gtaacctgga accaaccaga aaccatctac cacccaccga tcatgaacta catgatctca
      421 tatagctgga ctaaaaatga ggatgaaaaa gagaagactt tcaccaagga cagtgacaag
      481 gacctggtaa aaccacagca tcaatcccag attgaacaag ctgtcttgtt attgtcattc
      541 ctcagcagaa gcaagtagag gagaaagcag ttgttacctt ataaacaggc cagcttttga
      601 ctgacgatga attgctatta cagtgttcag cattagttga gcattgccta aaagactacc
      661 cagaacactg gagtgcaaat ttatagttta tgtgagtgtg taaatgaatc cgcagacttt
      721 tcttcatata gtgttccaag aagcagctgg ctcaggaagt agttaggctc tgaatacttc
      781 ttggcctgtg ttcagctcac agattttcac attaaaagtc cgatccccca aaatctgttc
      841 ctgggctcag gcttttcact gtgcattgcc tcttccagtc tttggagtgg tttctggcag
      901 tgaatgttgc cagcag
//
LOCUS       KCLA01000672            1225 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10889upu ultra-conserved element locus uce-3139,
            sequence.
ACCESSION   KCLA01000672
VERSION     KCLA01000672.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1225)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1225)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1225
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10889upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1225
                     /note="ultra-conserved element locus uce-3139"
BASE COUNT          328 a          240 c          268 g          389 t
ORIGIN      
        1 gaaatgagca gtgttatgaa tacttgtgtg tttcctgttg caccgaaaca cgtttgttgt
       61 tgcaccaaca ggaaggatca gttgaatgac taagaaactg gaaatactga gcatctctgg
      121 agaggggata cacaactgtt ctagagatta tattcctttg ggctctgaca ttaacaattt
      181 tcttttccct ataaagacaa acttgcaaat gtgatgttct ctttccctgt ttccctgatc
      241 ctttagctat tgccctcagt ggaagcaatt gttttgttgg ttttgcatag tttgaactgt
      301 gtgtttgctt tgagtgtgac aatgagactg tgccaataat aagagccttt ttatctttcc
      361 cttcaggtct ggatagatgc agggacacaa atcttcttct catatgcaat ctgcttagga
      421 gcaatgactt ccctggggag ctacaacaag tacaaataca actgctatag gcaagtttcc
      481 atccaagggg gtttagtgtt ttagctaaat gatgtaaata aagtagggac aatgggttaa
      541 ttttttttta attaacttgc tccatgacat atgtgtgact tagggactgt ttgctgctgg
      601 gatgcctgaa cagtggtacc agttttgtgt ctggcttcgc aattttttcc gtcctgggct
      661 tcatggcaca agagcaaggg gtgaacattg ctgatgtggc agagtcaggt acgatggtat
      721 tggtggcagt ggtggtgggc actgccgccc agcgtgtgag caaagttctg cagactcaat
      781 cagctaacac ctaagcaata aaaacgaaca aggtttccca taatctccag aaaaataagt
      841 gcattgttga tttgggcttt cctctagagc agtaaaggtt agcctgggtt gtactgttta
      901 ctctgtcttg attaacaggg cagtgaacac atttcctaga gtatgctaat ccatctgagt
      961 caagattaga taaccacacc attatcctgg gcccagaatg tcactatttg gagattttat
     1021 tccatctttc ttttcagact acctttcata caaatgcaaa tagccagtgt tgatgtattt
     1081 tttatagctt agctttgctt gctcacagcc ttgtcttttt gagggaacat acacatatat
     1141 attcccaagt ctcactgaaa agcaaaagaa gctggagaac tccttttcct gagtcctgtg
     1201 gaccagttca tccacagaaa ctcaa
//
LOCUS       KCLA01000673             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10903upu ultra-conserved element locus uce-6871,
            sequence.
ACCESSION   KCLA01000673
VERSION     KCLA01000673.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10903upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-6871"
BASE COUNT          135 a          124 c          136 g          119 t
ORIGIN      
        1 ccctcttcta ggttgtttct gcttccctcc tcctcctttc tctgctcccc agcccatgtg
       61 taaaagtagc aggggggcct ttattaaagg caaagcccca cggcagcagc ttcccagcca
      121 aactgctctt gtattacttt ttgatgagtt ttcaatttag gcctttgcag acagggggaa
      181 gaaggagact tgagagacag aggggggaaa aaaatgcaac agatggggcc gattgtgctc
      241 tctaggcaaa ttaaggaaga catctgtagc tcccaaatac tggtggtcta aagcaattag
      301 tcccctgtga aaaggggcct ctctgagcct cctccagcca atgggcgccc cggcagcact
      361 cacgttacaa tggccttgac cacaattcac tgagccaaga aaaagaaaga ttaatccagg
      421 aggagctgtg cggccaggct ggagttgcta ggcttaaaag ggaaggttac gtccgtttct
      481 gcctgagttt agagcagaaa agcagaatgg aggg
//
LOCUS       KCLA01000674             944 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10917upu ultra-conserved element locus uce-3520,
            sequence.
ACCESSION   KCLA01000674
VERSION     KCLA01000674.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10917upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>944
                     /note="ultra-conserved element locus uce-3520"
BASE COUNT          296 a          146 c          164 g          338 t
ORIGIN      
        1 taacctgttg ttaaggcaaa tttcacttgc cttttatgaa aagcacattt ctttttgcat
       61 gtatcgtatc tacttgcaag ctcatgggaa aggtaatttc tacccattta cagatgttat
      121 attctcttgt gatgattagt tgttttcttt ttggaattcc tttatccttc atattaaact
      181 ttacaatgaa tttgaaatat tgcagctatg aagaattaac agtaaggtaa ttaacaactt
      241 cgtgtttatt tttctcccta gcagtgttga tggtatttta catggtattt ttgatgcaaa
      301 ctagatgatt gcagtatttt attgtcaaaa taatgtttca agtaataaaa tggcaaggga
      361 atactgactg agctattaat aaaacaccag cttttagctg gcaaagcagc cttttttcca
      421 tcaaatatgt ctcagccttt aataaagaaa cgcaactggt gtaggtgaaa aattactttt
      481 ctcacccggt catctgtctg tcatgtatta ttcaggtcac caatgtttgt cctgaactgt
      541 atcattctgt agttgtgtca ggtatgaaat atgttcaatg taattccatc agacttcacg
      601 aagttgatta gaacagatca cctttcggca tgagcacaag ttatctcagc agattgagtg
      661 aaaaggactt atttatcttt gccttataat aaagaaagag atgagcgaat ttctccatta
      721 acttgaaaag gccatgtatt ttgtgtgaaa ataaactgaa ggcagtaatt ctattgaaaa
      781 tattttaatc catgaaagaa tctttgaaaa tctatgttcg tgtttgaaac cagaaaacct
      841 aaaacctgag ccatatgggt tacacaagat tgtaaataat tctttttttc ccttgagtga
      901 aataatcaga agcagtggct ttttgatagg ttgtaaggtt ttaa
//
LOCUS       KCLA01000675            1197 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10933upu ultra-conserved element locus uce-6872,
            sequence.
ACCESSION   KCLA01000675
VERSION     KCLA01000675.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1197)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1197)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1197
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10933upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1197
                     /note="ultra-conserved element locus uce-6872"
BASE COUNT          398 a          244 c          212 g          343 t
ORIGIN      
        1 taacaggatt ttctttctag agactttcac agagttgcag tagtgcttta acagagtcca
       61 gaatcacttg cacagcattt cattagcctg tcttgctgtt gtcactctgc cccaacaggg
      121 aagcaaggag gtgagtggcc agtcacaatc acaacagcac cagcagtttg tctttgaagg
      181 gcaaatttag tttgtgtaaa gtgttatcgc tacacataaa ccagaagctg cctttattac
      241 ttcctgttca ttccccaaaa ggacttcaga tgtcagaatg actaaaggga tgcttctgaa
      301 atcaagactt cacacataca caaaaggcac tgacatatta tcagattaca taaaaataca
      361 catcctttta atctcctgga cataatttgc ttacttttaa aacacaaaat ctgccccaga
      421 tggctaataa tgcccatttg aaaaaaccca acaccacaat attaaagggc taaaatatgc
      481 tgcgaacaga ttgagaggca gttcatccta gaggagagta aaatagtgca gatgggtgtc
      541 aaaaatagcc aagtgtcaga tctgttcaag tatctccatt ctggcacatg ctcccagtca
      601 cagctgttag tgtattctct gtatccaagt gcaaggtttt ctaacacttc gagttgacat
      661 taaaacactc ttcttggttg ctactgcttt aagagaatgc tggaaattaa aaatttattt
      721 actggtaagc cttaatgagt atcaatacga gtatgcatac tcaagtgaag catgtgccat
      781 tttgagtaaa gatgcatgaa attttaacca gcaggtacac caagtaattt aaatgccaaa
      841 ggcttaatag gtttttaaaa acctccactc taggcattcc aacactgtgt gccaacagcc
      901 caaaataatg cacccaatga tcaaacctga tgatcatgtc attttagcac atctatgtat
      961 cttagtaaaa ctcagaaaca gtgaactgca caagaagggg agtttcatac aaatataaga
     1021 gaaacgtcag tggattcaga ctctgcagaa ttaaattttt cgaattcagg cattaccata
     1081 tttctgacga agatcacatt cccaggaatg cactcaaata aaatctgaca tttaaagggt
     1141 taaattgacc tttcatagtc ctcagttgtt atctatgcaa attaatttgc ctgtatt
//
LOCUS       KCLA01000676             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10948upu ultra-conserved element locus uce-241,
            sequence.
ACCESSION   KCLA01000676
VERSION     KCLA01000676.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10948upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-241"
BASE COUNT          238 a          136 c          127 g          318 t
ORIGIN      
        1 agaaaaaatt ccaagccccc aaacttaaaa cacacatgca gaagctcata ctcaattcta
       61 attaacaaag cctacctttc tcttgaccat accccttaga ggtcagcatg taaactattt
      121 aaattgatag caatactatg caccacaaaa ttaattttac attgtataca gtttttattg
      181 tgactttatc ttgtttcaaa agtgcttact ttttgatttt gtggatatta ctgactggat
      241 tacttttatt ttggtttcca cacaacagtt atattagaaa tttgctgttt tattcttacc
      301 ttcttagtaa aaatcctttt atcacacaat gggtaattta tatccattac cagccctttc
      361 aatccttttc agtggtgctg tcagtgcctt tggcacagta atgattaatg tgatctaata
      421 atagtgtgcc attatattac cttagtaaaa catgtaccaa catcctattc agatctacca
      481 aattcatagc ttcctataat atttttgttg aaagacagga ttactatttt tcaaagctga
      541 tttttctttg cctttaacat atttaatgaa attcacaatt gtttgccatg gtaatctttg
      601 tgcatgcgtt tgggcttgat gggtgaattt tatatcattc tgcattatta tgatttgtta
      661 ggcaaattgt ttgacatgta aagagagata tgcattacgt tgttttgttt tgtgcagggt
      721 gcattttaag cattcggtac cttctgatta ttctgctgta tttatcatag ggggtgtatt
      781 tagattgttg attgcaagaa taagcatttg ggctaaaat
//
LOCUS       KCLA01000677             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10963upu ultra-conserved element locus uce-6070,
            sequence.
ACCESSION   KCLA01000677
VERSION     KCLA01000677.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10963upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-6070"
BASE COUNT          176 a          110 c          119 g          164 t
ORIGIN      
        1 agatcagaat ctgggcttcg ctaagaactc gggcatttgg ctcctttatt cattaaaaaa
       61 cacggacaat tgcattgact ttaataatcc ttacctcaaa gttcacttga aagaaaacta
      121 ataagacttt ttatttcaag ggagctaaaa ataaaagttt agctctggtc agccagggtg
      181 ggaaattcca ttgtggctgc aagcccatgg caggtagagt ggaatttaat gaaggaaact
      241 gctgtgtttt tgtgtctttc tgtatgtttt tcctttaaaa cccagagctg ggcaggcttc
      301 ccatttgacc tgatgtgacc caagcaaatt gcttcttata taaaaacaac tgcagacttg
      361 gagaatgtga aaatgcactg tatccttttt ccagctcagg gaaaatgaaa gcctgagaaa
      421 caggacagcc ctgtcaatac tcgttgagca aaactatcac tcaggctcga taaagagaga
      481 ttagaacagg cttcctcacg ccagagggat tcattatgag ttagagctct ttatgttttg
      541 ttttaaacag acacacttat cgtcgagaa
//
LOCUS       KCLA01000678             957 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10979upu ultra-conserved element locus uce-6520,
            sequence.
ACCESSION   KCLA01000678
VERSION     KCLA01000678.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10979upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>957
                     /note="ultra-conserved element locus uce-6520"
BASE COUNT          274 a          190 c          184 g          309 t
ORIGIN      
        1 aagtggtgta caacatgaca ttttaacatt aatccttaac gtgattttat tgagatgtgt
       61 aagcgtgtat ttttcactgt ctcatatacc attataattc ctttgactct gttaaattcg
      121 gatgtaattt aggatggaaa aatacatttt cgaattacac ctgcagcatg tagtattagt
      181 atgacttttc catggcatga cagtgatgtt tcaacaatct atacatattg atttagcctg
      241 ataataaaca atttgattag gctctatcta taggctgtca tttcaatcac tgtcactggt
      301 ccaatagagt ggaaggcagc tagcagacac atatggcaag atttctcaaa ataaaaactc
      361 tggcctgatt agagccctag gttcagtgaa ttggacaaga cagctcagct gccaggttat
      421 taactccctc agaaaatact ctgccttttc cccggggcca gcctgaatat tctgatctgg
      481 atcgataagc aatctccggt gtgtacaaaa tgccagctag aatcatttgt ctcagagcag
      541 tctccttaca aaggataaaa cacctgcagt atatggcctc tccctcctcc cccaccttcc
      601 ctatcttagc taatgaccca caaagaagga agaagtaact gaatctattc catcattggg
      661 aaggctctct taggtttgtt ttaatgatca caatggctac ctttcaatct tataaaaatt
      721 atatcagtat ggtttccctg tggcatgttt atgtaagtaa tgtgaaccac gatgtaatga
      781 caagtgtaca gatgtcattg taagagggcc cttggcaaga agatctctca gaatgtcaga
      841 attttaataa acagcgggct gctggtgggg ttctctttgg tgattgtctt ttatattttt
      901 aatgcgtgct gtgatctgtt ttttcgcccg acagtttttc aagactgttt agcaaca
//
LOCUS       KCLA01000679             502 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 10995upu ultra-conserved element locus uce-1018,
            sequence.
ACCESSION   KCLA01000679
VERSION     KCLA01000679.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 502)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..502
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="10995upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>502
                     /note="ultra-conserved element locus uce-1018"
BASE COUNT          168 a           68 c          100 g          166 t
ORIGIN      
        1 acatttcaca tacataaaat ctgtaattaa aatgatgaat tattgtaaga tagaatatta
       61 gccttttgac attttaatct gagtggggaa aagtgagaga gcacattcgg agccgctcaa
      121 ttaaatttag aattttttcc cctccattgt tatgaataaa tagaaagatt ctgtagcagc
      181 ctgcggaatt attaattgca agtactgtgg aaggtgcatg caccgtatca tgaaatggag
      241 tatcattgtt agtgactata tttcttggta attaaggccc agactaatga tgcaagtttt
      301 cttcagcatg attttcatct gattatgagg ctgcttcatt aaaagcactc agactaacga
      361 gctgtagctg taataaagta attttctgtc ttgtgctctg attgataaag agtttctata
      421 gctaaaagga attgaaaata taattataat tagaaatggt tgaataaagt tactacagga
      481 ttgctgaagg gtagtgacac tg
//
LOCUS       KCLA01000680             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11011upu ultra-conserved element locus uce-7357,
            sequence.
ACCESSION   KCLA01000680
VERSION     KCLA01000680.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11011upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-7357"
BASE COUNT          262 a          150 c          165 g          294 t
ORIGIN      
        1 ttagccctac ttttaagagc tgtcatcaag aactgcctta tatgttactg gtgtttcaag
       61 gtaatctcag atatcagcta aagccatcag attgaccatg tgcagctgtg cagtgagtcc
      121 aggaggactc cacttcaagt tcttcaccgt ttttattttg tgtcttttgg tcttgtttca
      181 ttcatggcat atttacgatc agtaggattg agattaagag tctttatgta cacacatgca
      241 aaaatcagca ctatactttt tcttattttc ttttaatgat atttcattcc aacaagctct
      301 ttctatctag ccagggttct gcttaattag gtatttaaat gattggagca atgctgtttc
      361 tttaactcct aactgcgaca aacacatacg aaacatactg ttggcggcat ttaatcaaca
      421 gcagtcaatt tatcattttc acagttttag tgactggtta tgaatcacta aaatcacagg
      481 tattgtagat gcagcgttgt ggcactatca ttaacaaata tacagtgcac agagggatga
      541 cttggtaatt gagtgggact aataagaata catcatttag ctgtgtgtga caaactgtgc
      601 ctcaaaacac aaccatggaa aattcacgtt ttgcttaata aataaattac acagccaatg
      661 tattatacat aatttgtgtc ctcatggatt tgaatgatat ataatgcatg gtccaattca
      721 tttatttatt aagactaact atatatattg taggtgggga attttaaact ctagagtaag
      781 acctgcatag gtaactgtta caactggtga gtttgattgg gcagcaaatg aggctatgtg
      841 ttcggggagc tgcaaacaca agcaagtgtt t
//
LOCUS       KCLA01000681             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11027upu ultra-conserved element locus uce-6992,
            sequence.
ACCESSION   KCLA01000681
VERSION     KCLA01000681.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11027upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-6992"
BASE COUNT          245 a          143 c          139 g          218 t
ORIGIN      
        1 caaagaaatt gtctgaattt acacacgaat aattcatccc aaagccaaat tctgctctag
       61 agaatttttc agtactgtat agagagacag acttttaaaa gagggcccaa tgaaaacatt
      121 gtctctctga gttctgtgga tcttgtgtga gagctggttt aactttaaca atatacactg
      181 tgcaaaaact catatgggct gaacattgca aggctgccaa tttaatttga aatgacttga
      241 cagaaaatct ctaggccacc aaacgctatt ataaagcact gtattctcat taaaggtctg
      301 agcccttttt ttttccctgc aggcagactc ctcgtgaggc tgtccctctg gcataacatg
      361 tgatagagct aatctgtctt cacttggaca gcactgcgga tatgcaaacc caggtggcac
      421 taataggttt acagtaataa ctatggaatt ggatacagta cgttacactg tgagaaattc
      481 ccacagatcg atttttgtgg tgaaggttaa ccaacagaca cagagccata atactctttt
      541 ttcatggagc tgttaacaat ttcatggttt aaaaaataaa agaagaaagg ttatcccatt
      601 ttttgacaga atataaatat ttaacttgtc aaacatatct acagtatatg gacatcaaaa
      661 aggctctctt ggaaagacaa cttctgttgt cagtgattcc agcacaaatc tggaggaatt
      721 ccattggctt caaagaaaga tacca
//
LOCUS       KCLA01000682            1069 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11043upu ultra-conserved element locus uce-1194,
            sequence.
ACCESSION   KCLA01000682
VERSION     KCLA01000682.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11043upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1069
                     /note="ultra-conserved element locus uce-1194"
BASE COUNT          300 a          251 c          246 g          272 t
ORIGIN      
        1 ggacagaagt tgtcggtagg tggtctctta atatctcagc agttttgaag ttatgaaaag
       61 gagcaagact ttttgaaatc tagaaaagaa agaaagaaaa gctagaaact gagtgaaaga
      121 gcagagtcgc agcatcggtg acccgagaaa cctcattgct ccacttatac tggcacaatg
      181 tcatgttctc agccactcca tcaccagcca ggggaaaaaa aaggcttttc ctttcctttt
      241 agtcaaaggc agtgggtaag cagagcacga ggttcagagg gtcattaaaa agcatcaaag
      301 gaggcagcct catgatggta ataagacggc tgcaaggaaa taaagtgggc attgatctgc
      361 actatcgagt gtgacatttt aaccggagct aaaagccaag agcagctcta gccctcttat
      421 tcatctgcct gcctgtttta gtaaattgtc tttttttttc ctccaaccag tggcctcaga
      481 ggtcacttca tattagctgg cttgttaata ccgaggcaat caatacttaa tcaacaagta
      541 atgggatttt gcagtcatcc tgtatgatct ttcaataaag ccccaattct atctcagccc
      601 attcagagcc tgactaaagg tgcacgattg ctgcagagcg gggatttgat ggtctgatgc
      661 tcttaggctg atctgcatct gattaagaca ccacgcagcc actgtccttc acccttttgt
      721 tcctttatcc ctgtataatg tagcatggca cagaaatccg tcatctttgc ttttagatgc
      781 aaccgccaag gaattaatat ttccttagcg catcatgatc cagcctcccg gtcatgatat
      841 gcaaccgaaa aaacagccaa gggggaggga aattgcggca gggaccgtgg cagctttcgt
      901 gcattgcctc agaaaacaca gtcagaaaga atgggtccaa actggccgcc tcgctcctac
      961 cctctccagc ctcctccctg agaggcagct gtatgtaaca gcccttgtct gtggcctggc
     1021 tgtgtgagag aaggtcttac acagacaagg ggtcacagtc taaagctcc
//
LOCUS       KCLA01000683             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11059upu ultra-conserved element locus uce-6426,
            sequence.
ACCESSION   KCLA01000683
VERSION     KCLA01000683.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11059upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6426"
BASE COUNT           91 a          250 c          169 g          143 t
ORIGIN      
        1 ctctccatcc tccccaaagc ttcgccggag atgcaaggag agccccccac cccgggagag
       61 cgagccggag cccgaccccg acagacaggg gcgccttggc cccgccgagc ccgacgcccc
      121 ctgcccctat aagcccaggg ctggcagagg cgcgacgctc ttctccttct ccttgcaact
      181 ccccgagtca ttcccttccc tcctggatga tgacggctac ctgtcgctcc ccaacctctc
      241 cgagaccaac ctcctgcccg ccagcgtgca gcactacctg cccatccgct ccccgtccct
      301 ggtgccttgc ttcctcttca tcttcttctt cctgctctct gcctctttct cagtgccata
      361 cgccctcacg ctctccttcc ctctggccat gtgcctctgc tacctggagc ccaaggcggc
      421 ctccttgagc gcctcacttg ccaatgacct gagtgacagt tcagaggaag aggtgtgtac
      481 ctcggcttcc aacacgctcc cccccgtgtc cggcgctccg ggcccaaccc gtgccagagc
      541 gccgccatgg tcctactttc agagcctcat ttctggctgt gctgatggga cgaggtgggg
      601 gggatcgctt tgattcgggg tttagagggg gggtttgggg ttggtttgtt ccc
//
LOCUS       KCLA01000684             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11075upu ultra-conserved element locus uce-3356,
            sequence.
ACCESSION   KCLA01000684
VERSION     KCLA01000684.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11075upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-3356"
BASE COUNT          244 a          147 c          163 g          247 t
ORIGIN      
        1 ccgagaagtt gtgcttagaa ggctcagaag ccttcctgtg gtggctttca tgctcttgtg
       61 tttctccatt acatccgtta acaactacag tagcaacaag cagcagattt ttttccattc
      121 tgtgagtaat tgtctgcaca gcagtgacag atgtgcaata tagcagcttc ttcaggaaaa
      181 aattaacagt ttgtccagca tgtcaactcg ctcttttagt gcttcggagg tcctggcccc
      241 attatggatg atttagaaat tgaggcaagc taagaccagc tgcctgggtt gaaagcctta
      301 gttagtagcc ctcatctgca ttccagtatt cacttacatc tagaaattgg tagggcccct
      361 ctggccacaa gatgagtatg ggctgacaat gccttgattt gttgagagag agaataaatg
      421 ggtttttcag gagatgagga aatatcacca ttactggcca atttacagca ttttatctgt
      481 tcttcaaaca tgtcactttt gttattgttg catggtaatt acatagtgaa acggaaagaa
      541 aacaaattct ggttacatat tcagatggat tgcaaaatca tataatcctg ataaatgccc
      601 atttatgata cacacggatg aaaggttcat tttaattttg aatagctagc acagccataa
      661 ataggatata ggattagatc ccacagaatc tgattaccta aaagcaaata gtatttttct
      721 tcactttttt cataacgagg acattcagtg tgtgcagggt atttaaataa gcaggttttc
      781 cataaaaaat acataaagga g
//
LOCUS       KCLA01000685             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11091upu ultra-conserved element locus uce-1868,
            sequence.
ACCESSION   KCLA01000685
VERSION     KCLA01000685.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11091upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-1868"
BASE COUNT          178 a          154 c          135 g          181 t
ORIGIN      
        1 cccacccctt ccccaagcac gaggcttgat ttgtgttctt attaactttg tcctataaat
       61 gaccttgtaa ggagagcggt tctggaggct acgtggaaca atgtctatat tttctgaagc
      121 tccgggctaa gttttattaa tgtaatgtct cagatctttg aagttgtgac tttaccagga
      181 aaatcataat ctccaaacct ttattcataa tggctatgac ttccaggggg aacagaatac
      241 ctgctgtgct aattatttca attatcagct gctactaaaa cacgtaatgg attttccctg
      301 cttccacagg taaaaggcat gacattacgg aacttaactc tgatgttgtg aacttgatct
      361 cccacgctac acaggagaga ttacgagggc tcctggagaa actgactgta attgctcagc
      421 acagagtatc aacccacaag gtaaaggaaa tcattaagca agtgtcgcat caaagttttc
      481 ctgctttgca gcctttaagg gaaaactctc ccaaggaaaa gggctctgtg tgttggcagc
      541 acctacccag ggctacctgg tttcagctgg ttgttccctc taactcacat agaatcccag
      601 aaggattaag gctggcagac ccctctgagc ttctccagcc cagcacct
//
LOCUS       KCLA01000686             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11107upu ultra-conserved element locus uce-3373,
            sequence.
ACCESSION   KCLA01000686
VERSION     KCLA01000686.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11107upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-3373"
BASE COUNT          210 a          163 c          152 g          173 t
ORIGIN      
        1 caacagaaga gtagcaggga agggagaagt tttccttcca agggactcag aagcacaata
       61 agatatttac tctatttatc acggagatca aacccccaca cagatgtcac atttcttgaa
      121 ttccatcagt agatcagaca agcagtctct ggaaagagga cactgcagcc agaaagttca
      181 gagcatgcag gcgttggagg gccattcccg ctccgatttc tgtcgtgcac cctgagcctt
      241 tgttgtctcc gcaatgctga taaatcaatc catcaaaaaa tttcctcagt gaaactcaat
      301 caagaaaggt catgtcagcg ggagaggaac agattaaatt agcatcaaat tagacatgga
      361 aagtgagttc tgtcaaaatc atcacagcgc tcagcacaat tagaatatgt taattatgca
      421 tttcattaag gtagtgctct ttgaatgcga gatgaaatgt cagtggtgta ggcatccgaa
      481 aaaaggaaga ttgccaggca caactttctc tagacaatgt gtgacacctt cattaacatc
      541 aagaatcaca agtctgtctt gacttttttg taaagtatta aaccgttaac tgtttgctgg
      601 cactcagagg agggagagcc atcctcaccc cccctcactt ggctctgcca ccagcttcct
      661 cgccctgcca ggagccctgg ggactgctgc aagtgtcc
//
LOCUS       KCLA01000687            1096 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11123upu ultra-conserved element locus uce-5382,
            sequence.
ACCESSION   KCLA01000687
VERSION     KCLA01000687.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1096)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11123upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1096
                     /note="ultra-conserved element locus uce-5382"
BASE COUNT          342 a          208 c          228 g          318 t
ORIGIN      
        1 aaacactcca aagaaataat gctacgcagt tgtaatcgct aaccattgaa acggcacgtg
       61 ccagctaacg caaacgacag caggagtgaa atccaagtga ggagaatgtc aagactacca
      121 acttcgtaac taggtttgga caagcagaca gtgatttcca ctttccacag taaatgtgtg
      181 gtgggtagtg aaaaacacca tttaaaaaac actgtcaaat gtttttattt ctactggttc
      241 aaaccagctt gcttaatgaa atgaagttaa attggattga gagcccctcc tttcagaaag
      301 cagtctggtg agaggtgttg ctttgattgc ctttttttcc agtatacgta atatttttta
      361 cgtggcaagt tgctgggacc cctgatagtt cacaaatttg ggatcattaa gaatgttttc
      421 cgtgtcagag ctctactaat tgtgactatg ttgatgacat ccaccattct acttaaattg
      481 aaaattgctg cttactaaag aagttggact ctaagtcctt ggtgactgat ttgattagtc
      541 catttgagtg agaatagggc aacacagagg ctatgttaat ggcacttaaa caataggcca
      601 tcactaatca gagacctcaa agttgaagta aggttaattg ttatgcgggc tctatttgaa
      661 aagaagtgtt gactggtgta aggcactatg ggactgtagt atttgaacat gcagccctaa
      721 ggccagaggt tttgtctagt ttcccaatga aatttaaagc tacattatgt acatctctaa
      781 acaacagcct ttacgccacc gccttttgat acatcacaag agcaactact aattgataac
      841 agaaatgagc ccccaggcac cactttgaga tccagctctg gtactggatt gaaatccctt
      901 tctaaagttg gtgaggtggg aattgactga attttaatta aagccttcat gacatgcaca
      961 tagcagcttc aaatcactgc accgaccccc aaaagtttag gaaatctcaa atgaagtttc
     1021 agtttagtcc taaagtgcac gtttgatgga atgatatgaa ccgactaggg tgtcataatg
     1081 aattttggca taatta
//
LOCUS       KCLA01000688             848 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11139upu ultra-conserved element locus uce-5716,
            sequence.
ACCESSION   KCLA01000688
VERSION     KCLA01000688.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11139upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>848
                     /note="ultra-conserved element locus uce-5716"
BASE COUNT          290 a          111 c          158 g          289 t
ORIGIN      
        1 agagctagta tgccatagaa tactttaatt ttctgagctt aatatagtat ttaaatgtct
       61 gtgcaagcaa gagaaaaaag tatattcttt gtgccttgta ttttggaggg agagctatca
      121 gtataagctg gtaaagtttt gtatgaagaa aaccctgaaa aaaacaagct gtatagatgg
      181 taagattata ggttttaatg tatttgttcc agctcttaaa acttttgaat gtatatagga
      241 atatgttgaa aatgtagata tatgccacag agtctatgta ttgtataaaa gatggctcta
      301 gaaaactcaa tttcggtact ttggccggaa gaaaacaaat acttgcacat taatgcgatt
      361 gtttattttt gtaccaaaga caaatgcaac tgatatggcg aactgccagt ctaagtaaag
      421 ttttgcacag cttacatgat actgtactga atgtaaaaac aaaagaaata agaaaaaaaa
      481 ttaaaggtca gggttaggga tcttactgaa ctgtgaattt ttttgtttgg gtccaattat
      541 ctacagaagg agcactcata tgtaacaata ttattttgct gttcctgtag ttcgcttcca
      601 tggtagataa gttggtggcc gtctcggagt ctttaaatct tttttctctg cacttactat
      661 aggagatttt aatatatttg gattttagta agctattggt aaaatagttt tcaactttga
      721 gaatttaaaa aaaaactctt tagcttgttg tagtatactt ccaccaaaca accaaaatca
      781 aattattttt attgtaacgt gtatatatgt aaagagagag agagctacag atacctaatt
      841 ccttagtt
//
LOCUS       KCLA01000689             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11155upu ultra-conserved element locus uce-3907,
            sequence.
ACCESSION   KCLA01000689
VERSION     KCLA01000689.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-3907"
BASE COUNT          233 a          159 c          133 g          296 t
ORIGIN      
        1 atgatcatct gaagcacaac atattctaca ccgtttagaa ctacctcagg ttctcttttc
       61 atattaatca ctcctacctg atttagaatt taccagacac ctcgtcactg agaaatattc
      121 cagtttaaat atttgagttg actcgatcat cttttgttta atgaccaact tttaatatgg
      181 atataaaaca gtgtttaaaa tgtagctttg tccccccttt ctgaatagcc ttccactaat
      241 acttttacca actagtttca ttgaaaggtt tccagtacta cacgtaatgt aaagtccatt
      301 aggtcaggct cttcatagca tgacatgcag taaattacaa gtgcttcaag cagctcagtg
      361 aattacagtt catcactttg aaaggttcgc actacaagac tacagatatc agatctggca
      421 gttaggatcc aattaacact ttggtcagaa taatcagatt gtgtgtgtaa gacttgtata
      481 attcgtttat tgcttccatg tatcttcttg ctgtaggtaa atttgttgct gttatttcaa
      541 agctcggaat cagtatttca cttgccttta ggttatattt caagttcttt tgcagtgcag
      601 tgatgaactc tccctgttcc agcaatttag atcacttgtc ctgtagatac tactgcttga
      661 gaaatggttt gtttctggtg attttgtttt gtattcttac catgtcatta tatgtctaga
      721 aaaaaattgc tagcaatttt tactacggac attttatttt gtgtaacagt tttctccaac
      781 acgatcattg tgaatcacgc agaataccca gatacactgg a
//
LOCUS       KCLA01000690             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11171upu ultra-conserved element locus uce-1435,
            sequence.
ACCESSION   KCLA01000690
VERSION     KCLA01000690.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11171upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-1435"
BASE COUNT          206 a          104 c          117 g          258 t
ORIGIN      
        1 tccagcaagc actgtggttg agtgacatca cctcaatttt tttatatcct taaaatattg
       61 catttttcat attctttatt tataaaggaa caatgctgct gtaaatacag gtatttttaa
      121 ttttttattt cattccatca ccatgagatg cagttccctg tttgtttaag gggtatataa
      181 gctttctaat ggtgtcttca gaaatttata aaatgtaaat aattttgatg gtccttaaga
      241 tgtgtttaac tgtgagacta tttaactaat ggtgtggatg tgatttgtca tccagtatta
      301 agttcttagt cactgatttt gtgtacaaaa taggaaagag ggaaactgca gctttcatta
      361 caaacttctt gaatttgtca gctctctgag ttttagcaaa ccttacgcct ctggatagta
      421 catcgagcat ttctctctgg ctttaatttg ctaaagctgt gcacatatgt aaaaaaatag
      481 attattttag gggagatgta gttctagaat tattgcttat gtcatttctt aagcagttat
      541 gctcttaatg cttaaaagaa ggctagcatt gtttgcacaa aaagttggtg atccccccaa
      601 aaatagtaat gaaattactt ctgtccagta aactttgtat gtcatgtcaa tttataataa
      661 aagctgaaaa aatccctttg ttttc
//
LOCUS       KCLA01000691             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11187upu ultra-conserved element locus uce-6230,
            sequence.
ACCESSION   KCLA01000691
VERSION     KCLA01000691.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-6230"
BASE COUNT          121 a          106 c          103 g          104 t
ORIGIN      
        1 ggcgaagggc gaagggcgcc gcgtcccctt taaaaggaaa tataatttac agtgtgcagc
       61 caggcggccc gtcgctccaa tctcgtttac tacagagaaa actctgcgag ctgttctcta
      121 tcccacaaat ccgatttaat cagacaagcc agccagcgtg gcttgaagta aaaacggata
      181 attagtaaac agagagctac ttcagtgctt cattggcatt cgagccgggc gagtgtgtcg
      241 catttaaaat gcagtctgat gaagtttaca aaatcaaacc atttgttact cctattgaag
      301 aggcttcagg ccacttgcaa ttaaattgga attagtgctc ggaatgagat acagcaaatt
      361 catactaaaa agggatctga ctttcagacg tttgacttcc cggttcgcgc gtgcgcgcac
      421 ccgcggcccc cgcc
//
LOCUS       KCLA01000692             959 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11201upu ultra-conserved element locus uce-7985,
            sequence.
ACCESSION   KCLA01000692
VERSION     KCLA01000692.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11201upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>959
                     /note="ultra-conserved element locus uce-7985"
BASE COUNT          278 a          197 c          221 g          263 t
ORIGIN      
        1 aaagccagtg gtgtcattaa taatcttatt agaaaattag aggataaata ttattccgat
       61 cagatgcctt cgttgcctct cgacagctgg aatggtggag aaacgcggtt cgtcagagca
      121 gcaggactgg cagtacttct gtacgaaact tctcagctca caatgctctt tctgtgaggg
      181 agctgcgtcc agtttgggac ggacaggcag cctgcaagct ttgtgccagc acactaatcc
      241 tttgtttgtg gcttactgga atactgctgg cattttcgtt cccggttcac cttggtgaag
      301 aaacccaatt ccacatacga tcaacccggc gtctgcagag aggcagtcac ctaattgcac
      361 agccaagcag aagaaagcct tgcaaatggt atacaatttt caaagtgttc caagccttag
      421 gcaaaagcct ttcaactgtg tctaaaactg aatgataaaa tatgttgtac aaattatctg
      481 tgaacaggaa acatgtggta gtggcagggg actgaaatct aacacttgta aagaaatggg
      541 aactgccagt catttagacc cttttacttt tctctcagac acaagtttca tcatattttt
      601 ttccgccatc agttgatgtt cgagtttata ataagacgtt tatcagatct cactaggcca
      661 attacagctt tgtagcaaaa gcaacaccat ccgtagtaaa gctaaagggt tagggtttct
      721 ttccttctgg tacttgtata ggctttctgg tttatcatcg tgagggtatg tgtggatgga
      781 attttgagaa ggctccagga ctgcagagaa gcctgagatg ccagtcatgc atactttaga
      841 ctgaagtaac cagaagttga gcaaactttc tcaagtcctg tctgtaaaac agtacccaaa
      901 aatggaatgg agagagtgag aggaagacaa agcagctgca caattcctgg ccagcgtga
//
LOCUS       KCLA01000693            1047 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11216upu ultra-conserved element locus uce-1523,
            sequence.
ACCESSION   KCLA01000693
VERSION     KCLA01000693.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11216upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1047
                     /note="ultra-conserved element locus uce-1523"
BASE COUNT          339 a          224 c          200 g          284 t
ORIGIN      
        1 ttacattgtt ttgaagatta aaaatctgat gcattgagcc aaactctaat agaaaagaat
       61 gtccatctca ttgttcataa tttaaaatat aatatcaatc ttaatgcact gtcagactga
      121 acccaaccaa acttcttgaa attgacaaga tctcgtgcta catgttcccc acaagttgtt
      181 tcttttaaca aaagtaaaat gaaaactgaa acctaatcaa gaaaagttgc aatctaaaaa
      241 taattacata agcattattc ttggaaagaa tatctaattt ccttcctccc tttcaaaagt
      301 tttctaggct gctgtagatt gacaaaaata ggaataagca tctttcgacc acaaacagat
      361 gtgcttgata aagaaaatgt cagcaaaaat actaaagcaa tgtgtcacag cagctttctg
      421 acagatagag ggaaaaggta aaaaatgttc tatcatgtcc gacaaggtgt tctttttgag
      481 atttaaagat cactgtgcaa ctttaaacat gtttgtcact ttggctctga ctggagctat
      541 ctggagcttc acaagaactt tatcagctca gcatagaggg gaagaaagaa gcccattccc
      601 atttatctca gccaggttcc cttcaaagcc aacaaataaa ttacagtgta catttgatac
      661 aaattgattt cttaactgaa ataacaatgt tgtcctccca gtcaggccat gtgtcactca
      721 ttcgcgaggc tgagtgaaag gctcaatctg tctgcgtgac agaaataggt ctgacgcctc
      781 tcgccgagga atgctaatac ccccggcctg gcccgggcct ttgtgggcaa gccgtgataa
      841 gggagatcag cccatcctgt cacacaccgc gaaggcctca tccgcatttg ttccaacgag
      901 ctgcagaggc ctcggacctg ccatcccatt tcatgtagta aatgagagga aaataagatc
      961 cggctactgc ggttaagatg ccagtgactg tgttgaagcc acagtgaaag gaaaccccat
     1021 tgaatatctt gaactgatct tatcggc
//
LOCUS       KCLA01000694             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11232upu ultra-conserved element locus uce-5895,
            sequence.
ACCESSION   KCLA01000694
VERSION     KCLA01000694.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11232upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-5895"
BASE COUNT          205 a          151 c          130 g          170 t
ORIGIN      
        1 aagacagact tgttctcaca gcctgaacat gaagctggat taatttggaa aacctgaaca
       61 ccgatatgct gcgatctgct gtgtcctcaa cgcatgtgct cagcaacaac tgaaaatgaa
      121 agatcttaaa tattatcaaa cgttacatca ttaaatataa attagatgta aagaggggaa
      181 agctaaaaat tgactaggag ttcagctact ctaaatggct aatacggcca tttttcacct
      241 gaagccctct ccaatacagt tttgccatta agcaaaaacc taaagaaagg taatcaattc
      301 caactaaaaa gcacttctcc tggaatgact gcgcttcaaa cccctggctg gctgccagcc
      361 cccccagaca acagctatga atgtttctga gtatcacagg agcacgaggg gccatgcata
      421 attgactaga agatgggcta aaactgtgcc caatcagtgt gtgatcaaaa ccgcgtggaa
      481 tattcagcgc cacttgatta catggaggca cgtccttttg ctctcctcat gaaatctctt
      541 caaggtccag agtactgtaa taagatcatt actgtcaagc ggtacgaatc gcaggcaatg
      601 agtcttggga taggaagtca tacttcacaa gctcctctgg tctttttttt tcctcc
//
LOCUS       KCLA01000695             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11248upu ultra-conserved element locus uce-843,
            sequence.
ACCESSION   KCLA01000695
VERSION     KCLA01000695.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11248upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-843"
BASE COUNT          228 a          220 c          208 g          216 t
ORIGIN      
        1 tgctctcaga aaggaaccag ttgaaggcga gcatgggaga attgttagac aacttctcgt
       61 gtctttccca agaagtgtgt agagacatgc agagcccgga acagatccaa gctctccatc
      121 ggtactgccc cgttctcaga cctatggatc tacagccagc caccaccatc agcccctccc
      181 cagctggcgt ggagcagagc ctggtgacct cccagtgtgt cggggaaagc atgcagtgct
      241 gctcggagca aggctcggtg caactgggag cgccctggct gcccaacaac atctcggaaa
      301 attgttcggc tggcgggggg ttggatggag ccgacgcagg tacttacccc gagagagagc
      361 ttcctccaga gcagagcagc caaacagtca cggtagactt ctgtcaggaa atgactgata
      421 aatgtacaac agatgaacaa cctaggaaag attacaccta gtgacttgta accctagcgt
      481 tacacctggt caggtgttct tcagtcagcc agtggcagtg ctcatttgtt gtctagaaga
      541 acgtatttgg tgcacactac agtggtctta gcagcaatac tgtttttaag tattccctcc
      601 tctctacaag caggagttct cttcacaatg gtgctatccc tcgctcaggc agggaacgaa
      661 gcagtggcaa cactgtctgt ttttgtatgt tgatttcaat cttaacaggg atggacataa
      721 cacctctgag gacccaaccg cagctttttt ctcagtggcc catgtcacaa aaccctaact
      781 caggaatttc ctctgaatgt tcaatttttc attgaagaca gcttctttac acatcaaagt
      841 tttatagcga aactgtacat attatatata at
//
LOCUS       KCLA01000696             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11279upu ultra-conserved element locus uce-6913,
            sequence.
ACCESSION   KCLA01000696
VERSION     KCLA01000696.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11279upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-6913"
BASE COUNT           98 a           87 c           69 g          136 t
ORIGIN      
        1 taggtgctac agcagtgctt tatcagataa acattcctta caaatcaaca ttctccacaa
       61 agtagattgt aaaacagttg ttttctagaa cttcattctt ttataatggt tctttttctg
      121 caggactcgg ctctgctaag ctccctgcta caatatctca gcttgttcta tttgacggct
      181 gttcccctgt catcactcat tttcagtggg caagggggag caattgctgg gcatcaaatc
      241 atcatcaagt aaaccagcct tgacactagt taaaaaggga gatggatggt cagttggctt
      301 ctacagaaaa tactctccta agtatcctag caaggtccct tgatagcagc ctagtgcttt
      361 tctttctttc ttatcctttt tttttttctt
//
LOCUS       KCLA01000697             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11295upu ultra-conserved element locus uce-1860,
            sequence.
ACCESSION   KCLA01000697
VERSION     KCLA01000697.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11295upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-1860"
BASE COUNT          230 a          160 c          145 g          281 t
ORIGIN      
        1 attagaggat gtttgccata tctgctttaa cactgcagac attttaagta ggttattcca
       61 tcactttgcc attttgatta tgacaacaaa atgacaccat attgaaatgg attttggaaa
      121 gaaaggctaa ctgtccaaag aggtccatgc tcgctctaat taaaattggc ttaggtggca
      181 caaccttcat aattcagact gcgactatga aggatatgca tgttgaaagc gctctttgct
      241 cattagtgct atttctgtca gacactgcta cctgctcttt tcttaatgaa tgctaagcca
      301 tctcttaaga agattgtgcg gcttccctga actgaaggaa ctgtcttatt tccttccaag
      361 ttcgttgaga gtaaaatcag ggagtcacct ctttgacatt tcccaacctc tgtacttatt
      421 tatctctttg agaccctgtg ctccagagat atcactgtct taattaagaa gaaggatgtg
      481 accatggtaa attgactgat tccattgatt aaggactagc tgtacaagta acattgattt
      541 taacagtggg tctacataaa tgtaattgtt cgaacatggg gctgcataat tatggtgatg
      601 tacgagaata gttggtttgt ccttttcaac cttcactaac attcttttgc atggtaatgt
      661 acctcgttca attagcagaa atcttaaatg ttaccaaatg tcttttgtga aggcacacag
      721 taatcattac ggtctaattt aatctaacag tagtagacag ttacatctct ttccttttct
      781 tcacttctaa atttttctcc tctaaccctt cagttt
//
LOCUS       KCLA01000698             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11311upu ultra-conserved element locus uce-7522,
            sequence.
ACCESSION   KCLA01000698
VERSION     KCLA01000698.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11311upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-7522"
BASE COUNT          252 a          184 c          189 g          298 t
ORIGIN      
        1 acttcatttc attattcttt tgttacaaat gaatagctgt ttgctacata gccatatttt
       61 ctcttgttgg ggtactgtcc agtgttaaca ctcattacca gggaagttta ttgtaggcta
      121 aatttaaact gcttcagcac ttttgcttct gtattaaacc tccgtgtgct aaagacaaaa
      181 cagaattctg ttgtttttct tccttttcag tagtggaacg tttttacaga agtgcctaaa
      241 gagaaaatat ggcttccata atttttttct ttagataaac ttcaaggtct tgcagcaaag
      301 tgtctttact tgatgtgcta caagtgatct aggctctttt aaatgtattg tagaattttt
      361 tttccaacat gcttcttccc ttgcaacagg taccgttttg cagagattcg ctaccatcgc
      421 cctgaggaga cccacaaggg gcgtacagtt ccagctcatg tggagacagt ggttttattt
      481 ttcccggatg tttggcattg ccttcccacc cgctcagagt gggaaaccct ctcccgagga
      541 tacaagcagc agctggtcga gaagcttcag ggtgaacgca aggaggctga tggagaacag
      601 gcactgaacg ctaatccctt tttctatttc tgcttctcac aggcacagga acacaggcac
      661 aaaatgcaca ccacatacta caccacatac atacatagga ggaacataac tggtaacaat
      721 gactggtaaa ccagctttca gcagtgtagc aaatgttggt ttttattttt atttcagcta
      781 gttcactaac tttaaatgtg tatgctgata tcataaatgg aattaaattg tgcttacgat
      841 gagcagaaaa gttttaacct tagatgtagt tgctggaatc tgggaccagt tgttgagtga
      901 gatgcagttt atgaatagct gtc
//
LOCUS       KCLA01000699             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11327upu ultra-conserved element locus uce-3115,
            sequence.
ACCESSION   KCLA01000699
VERSION     KCLA01000699.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11327upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-3115"
BASE COUNT          298 a          132 c          204 g          329 t
ORIGIN      
        1 tatttgtgca gctgggttca tgcgacttgt agattgctcc tgacaagtga atgtaagatg
       61 cataggactt tgaactgggt gtattgcaaa acagtgaaaa caaaagggag gatgaaggca
      121 catggctgtg ggagggaagg tgaagaaaca gaaaacaaat ctctgctaga gtaacgacaa
      181 tatgaagcat aatattaaag gaagcaaact aacaaatgag tacacaggaa agtgtagaag
      241 aagaaagaac atttgaaggg gattgagaac atttgataag atagtaattg ctatatactg
      301 tacactttga tcatgccaag tgctagattg ctatagcatg ctcctctttc cctttctatt
      361 tcagccactt attaactctg ctgtctgtgt ctttccagtt cctgtggagt ggtgttgtca
      421 attgtgttct tgttggtagt tttttttcac tattctgctc ctataactga tctactaatt
      481 tgctgttttg aactcagcct ttgtcggaat tatgggtaac acaagatcat acaaactgct
      541 agactggaat agtttcaatt caggtatttt actagtcatt cagtactaca tatgctgaca
      601 gaaattatgg cagctcagtg aagttcttag aaatgctgta ggatatttag gttaatgctt
      661 caaatttaaa tctgtttaat tatcaaatgc ctaaatgtca tgttttaatg ttgataaagg
      721 ctttcttaaa attgcaaacc actgttttag tataaaataa taatgctaaa aataatttaa
      781 caatctggaa agctgaaact cagatgatta ttttgtagta gctttcagct tagtgtccat
      841 gcagcaggta atttagagaa ggagaatgaa ttcttgttta tataattaaa atcatgttag
      901 gtgtcattat gttattgggt tgattttttt tagttggttt gatgggagct gttggttggt
      961 ttt
//
LOCUS       KCLA01000700            1037 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11343upu ultra-conserved element locus uce-729,
            sequence.
ACCESSION   KCLA01000700
VERSION     KCLA01000700.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11343upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1037
                     /note="ultra-conserved element locus uce-729"
BASE COUNT          327 a          189 c          167 g          354 t
ORIGIN      
        1 tttctcttgt ggtaccacag gggtaaacct gaagtaattc caacagcttc agtgtagttg
       61 ctttagattt atacccacat aaacaagagc cctgtttgcc cattgtttct aaaataccat
      121 gtttctcttt gatatcgaac ttcagtggct tattttatat tccctgacat cacattttat
      181 cacagataat ccaggaatat tgtttctctt agtaataaaa ttgttcttta gtgcatgacc
      241 agagtaaggg atatgtgtct tttagacatc acgtatagac aagaagatat aaatgagagt
      301 taataaccat caaatgtgtc tatttccttt tcctataaat tagagcatac tttcctactg
      361 aattttgcaa gaaggaaaac agactccctc ctgctgatgt ggggaagcaa tgctaaatct
      421 ccctaaagat tcactctggc ttcttacagc tgtatgttag taccttttta tatgcaattt
      481 tacttcattt agtctttaag gttgtgcctg aggttagttt aaaaggttag ttaaatgtta
      541 atggatgtta atgctgcaat taaattgtta aatcaattga aaactgtggc tccatctcta
      601 tctgtgttag tgccggcctg agttgcattg gcgtataaat taaaagctgt aaatctactg
      661 aagtctaatt agagaccaaa tttctcattt atcttatttt cacaggactg taagcactga
      721 tagataatca acgaagggct aaaacttttt aacattaaaa aactatttta tctatttcag
      781 gactcaggtg actgattata attcagatcc aattactgta aaaggtcata tgtgaaatga
      841 agttcttaca gacactacaa gttttatttc acaagtttgc atacagtgcc acaacatcta
      901 catccaaaaa agcaaaagta aatacactgc aaaagattac ataaaactat tctacaatta
      961 gcttccctca aataaccctg tgaagtttgt tatcttggta tgccagtgtg ttccatctcc
     1021 aatacagctt cccgtgt
//
LOCUS       KCLA01000701             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11358upu ultra-conserved element locus uce-614,
            sequence.
ACCESSION   KCLA01000701
VERSION     KCLA01000701.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11358upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-614"
BASE COUNT          242 a          207 c          210 g          219 t
ORIGIN      
        1 agactaatta actggttttc acaacaaacg aatccttgct cacagatggt gacactattc
       61 aacaaggcac ttaagcaagt gcttaattta tcaacctcaa cagggaataa gcaagcacat
      121 gcctaaaatt aagacaaaac cacacttaaa tcttcactgc actgccccga tgctggcact
      181 ggggtgagat ccttagagtc ctccacacag agtaagttga acctctgctt ttcttgcaga
      241 attaatacaa gagctgccag gatgctgtcg cagtcatttc tctacagttc attgtgtctc
      301 ttctgacctg tgtcctggca catctcactt tccaccacct aaggagggcg ggcctgtgcc
      361 agaggcagta tcagcagttc atgacagatg acaaacacag gtcaacaagc tctacgtcta
      421 cacaatctac agctaagagc acatattaga tgacctgcgg gcatgtgagt gtggatttgc
      481 aggtcctgaa gagtcccctc acacaacctc gtacgcaggt tacctcttgc ttgtcatggt
      541 tacacttctc gcacatggcc ggcgaggagt aatgatggaa gacggagccc gataggttat
      601 cgatgatcat taactccccg tcgaaggagt ccttaataat taaagagaca ctgtccagcc
      661 ataagttctc ctaggggaca agaaaggggg gaggatggga gagatcattt taagaatgct
      721 gagttgtttg cttcaaggct tcttgtgaat ttggggctgg gttctccacc ctgactcatg
      781 tggagcagca ccttgttctg caggtacctg tacgggatca ctggaggagc atttgctcct
      841 tagggtgtgc aaaggtgcca gaggtcaatg gaaaaaaa
//
LOCUS       KCLA01000702             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11374upu ultra-conserved element locus uce-6743,
            sequence.
ACCESSION   KCLA01000702
VERSION     KCLA01000702.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11374upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-6743"
BASE COUNT          213 a          191 c          144 g          203 t
ORIGIN      
        1 aaacttttga ttgtaaatgt ttcttactct tcattcaccc agtggaaagc tttagtcatt
       61 gccatgcatg ctacagtgaa aagcagcagc atcagtaccc aatccaccat acagagttaa
      121 tgtcctgcaa tctttccctg ctcctgggag tcagagagag tttccagctc cactcttcct
      181 agcagctgcc aaaattgtca gcactgatct gtcagaaagg atttttcctg gcaaaacttt
      241 gaagctcctt tctgacattc ccaacaaact aattgttgtc tcctgccttc gagagccctc
      301 tgaagtccca acgagttagt gtcttctcaa gagatgagaa aggggactca caaaatcaat
      361 ttatcaggct attaagcatt gtcatcagcc aaaacaaaaa cctgctaaag acaggagaaa
      421 aagtagaaga aatgggtctc tgagaaaagg ttacagaaca tccatcttct ctcctcttcc
      481 gattgtttct tttctttacc cattttcata cccatttccc tccactaaaa gacactttat
      541 gacaagcatt gtaatctctt tagtccaggg gggaacctct tctttaggac cgaatctttg
      601 caaggcgtga gtgacagcgg gaaggggtcc aattgccacc aaagacacta ggcaataaat
      661 catccaccct ggcatcaagt ggctggacta gtccccattt cctgatggcc accagtgcct
      721 ggcggtgaca aaacagctat tgtcagcgct c
//
LOCUS       KCLA01000703             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11390upu ultra-conserved element locus uce-2466,
            sequence.
ACCESSION   KCLA01000703
VERSION     KCLA01000703.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11390upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-2466"
BASE COUNT          223 a          141 c          172 g          223 t
ORIGIN      
        1 ccacccctta aggtccaagc atccagagag taacccccca gtacgtggcc atgcctgaca
       61 gcagccaagt ctgaaatgct tgtcccagac tcattagtct tgttataaaa tgcaattgga
      121 tgcgtgcttt ctcatttggc agtgaggttc taattgtggc acctaggagg ctgcaggcag
      181 gaaaatatct tgttccgtct tccattttat taactttgtt ttgttcgctt cagcctggta
      241 ccgtgttaga ctttgaataa tcacagccgt acaggtagct ccagtggagt gaatgagagg
      301 ctttttcaag ggctctgctc cctgcagaaa tgatttgtac ctctgcctga ttgtcactaa
      361 cagaaaatga gaaataggac cattcaatgc aaagtaatgt gttctgtaca attactggat
      421 taataatttt attccattac tgtgtgggga gagaggacat caggttgaag atctgcaatt
      481 ctagtatatt tctaagcgtc ctgttaagag agtgagcaag ggtcaggaaa cttaattatg
      541 ccataactag atagaaattg ccaagtgata aaaagaaaca tccagccaga ttcagcagga
      601 aattacagct ttaataatat agcataatgc ctacttctat acaattattg gagagaccct
      661 gaatgatttt aaataacagg cttggttttc caggaacgac aggggggaaa aaatggggaa
      721 atgccatttt gctgtaaata tttttttgag gtttggggg
//
LOCUS       KCLA01000704            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11406upu ultra-conserved element locus uce-4986,
            sequence.
ACCESSION   KCLA01000704
VERSION     KCLA01000704.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11406upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-4986"
BASE COUNT          278 a          227 c          237 g          331 t
ORIGIN      
        1 gattcttgtc acacatcaca accacccaat tgtcacagcg cttaagagag gctgggaact
       61 gcttggcagc agtggaaacc tttggattga tttcagggtc ccagtacagg tcttgaactg
      121 gagaggcaag aagtgtgctt gatcacgctt ggctctgagt ggctttggtg tcttagttgc
      181 agggatggaa ggtattggtg catttccttt ccctggaatg ttcctcccta tcacaattgt
      241 ttcccagtta tcactgtctc attaccaccc agagcaggag atggaggatt tctgccattg
      301 cctcggagca actgtgatct taagtttctt ccaagactca caccagggcc gcctctctgc
      361 atgtgtggtc tcttggactg cacagtgctc ataaataaat aaggggaaaa gttcttaatc
      421 ttcattcgaa agctcccggt atcacaatgc tgctgcacaa aagccatctt attagcccca
      481 agtgcaaaat gctgcctttt cttgcagaag ctcattaatt gcaggtcacc attcaacaag
      541 aaagatgagg cacttgagtt cttcaggctc tcattagcca cagagctgaa cagtatgtgt
      601 gaaattagca gtcacctgag tacctctata atttcataat tattaggcct aatgggttgg
      661 tctctgccaa atggttttaa ctccttcccg gccaaagcag ggaagcacgc aagacaccaa
      721 ggttggtggg tttggggagt tttataacca tttaacagct ttcttgtgga aataataata
      781 agaagcggaa gtttccagga tcatgtactg tttgcatttt ttaacatatg tttagctttt
      841 aattattcat atactgcgcg ccaaggaagc agatagcctg tatcctggag agtgggtgaa
      901 agagctctct ctgaaaaggg attttaattg gttttaaaat gtgttctgcg tgtgtgttta
      961 tatttgcctg catgagagag ccaagccttt ggttcctctt ctccttgatg attacattac
     1021 attatttccc atctcttaca tttttattta tcttaggctt aaaaagcaaa atc
//
LOCUS       KCLA01000705             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11420upu ultra-conserved element locus uce-694,
            sequence.
ACCESSION   KCLA01000705
VERSION     KCLA01000705.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11420upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-694"
BASE COUNT          100 a           42 c           49 g           92 t
ORIGIN      
        1 aaaaaaagta ttcaaatata aatgctctgc atcgtattac tctgagtatc gagaagcaga
       61 atattacaat attcaaatgc taatcatatc acttagcaga tgactgcaga aagtagtgta
      121 tttgaaccga gacataaatt ataaattgta aacagtgcat aggggatatg ttataactgt
      181 gtctcattta aattaaggca gggagttttc tctgaagcag attatgtgcc ttcattaagt
      241 tttaaagtcc cctctataat gttttattaa gatcacttgg cac
//
LOCUS       KCLA01000706             355 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11436upu ultra-conserved element locus uce-355,
            sequence.
ACCESSION   KCLA01000706
VERSION     KCLA01000706.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 355)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..355
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11436upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>355
                     /note="ultra-conserved element locus uce-355"
BASE COUNT          124 a           76 c           54 g          101 t
ORIGIN      
        1 aattcttatg aggaacatac aaaaagattg ttcttcagtc agccttaagc cattactttc
       61 ttcaaaagaa gaaaagacac aagttaagaa aaaggcaccg ccaaagacct tctgcccaaa
      121 tgtgcatctc catgaagttt cctgctgagt gcatatgaat gcactgcgat ctgggaaaag
      181 gatccaaata ggatttcaaa catccaaaaa ttttaactca aacatttagg tatttcacca
      241 tgctgctatt cattcattca ctgatttttt ttgtcttagt ttaaagagat gctaaacaaa
      301 agaagaggag ctctacatgt atttacattc caaaactaag ctccccttac caccc
//
LOCUS       KCLA01000707             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11452upu ultra-conserved element locus uce-5923,
            sequence.
ACCESSION   KCLA01000707
VERSION     KCLA01000707.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11452upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-5923"
BASE COUNT          295 a          154 c          146 g          351 t
ORIGIN      
        1 aattaaattc cttttaactt taaaacttgc aggaaaatgt ttaaataatt caatttattt
       61 aattgagagc taaataatta atatgttctt gttgttcacc tttacatgca tttctattac
      121 tgcagcaatt tatagcatgg aaattctact ctcatctttt tttttttatt cctctctcct
      181 tatttgtctg gattctttta actgaaagac gatcccttca acaataaatt atgaaaactt
      241 taataaagag gaatgctagt tagatattta aacatataaa tctcaccagt ctgacatcct
      301 ttgtgtcatt ttatttgtga catcaggttt gcctgtttgg aatttagtat ttccaaacag
      361 aagggttcta atttaaagca tcaatcacag aaaatgaaca taacctaatg tcagtgctga
      421 atcaggccat caatttattg ctttgtaaaa gcaatcagca agctatcaag caataaagtg
      481 tatgagataa gtgcttcttt tgagacagca cagccattga caatgatata ctgatggaga
      541 atagcaacta ttttccagtg tagtatgcct attacttgtt aaaagctctg aactgttcaa
      601 cagatgtgaa atatgtttct tattattatg gaccaatcta gtttgtttaa tagctttgta
      661 tgctacttag attttctgtc ttatttaatg aggttatatt tgaactctct ggctcttttc
      721 tttaagttga ggaaagtatg ccttcagttt ttcactcaat attctgagga acgacaaata
      781 cctggacgat gtttgcttca ttcatttgct agggaaagaa taaaatgcag agccattcaa
      841 accctgtttc tccaccttaa gaacaaatat cttacgccgt gctaacaaga tgcaatttaa
      901 tttttcatgg acatctgaaa tgcgtggatt ttgtagtgat tatttt
//
LOCUS       KCLA01000708            1556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11466upu ultra-conserved element locus uce-1250,
            sequence.
ACCESSION   KCLA01000708
VERSION     KCLA01000708.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1556
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11466upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1556
                     /note="ultra-conserved element locus uce-1250"
BASE COUNT          492 a          266 c          290 g          508 t
ORIGIN      
        1 tgaacttgtt aaatttttct ggccagcttt atcatccttg ctaaggataa aagatgaagc
       61 cttgacatag cttgttgtct aatgataaaa catgaaaaag tgagtgtgct aaaaactatg
      121 gctcgttgct cttcatacag ctggtccaga gatgaaaata aatggtgtct cgaatgcttg
      181 tagcatgatg aaaaatcatt ttgagaatca aaagaaagtg atgtcataca gaaaaactgt
      241 ttgaacagat tagaagcgag tgcttatgcc aacatctctg tttgttctcc agccagtgaa
      301 tggcaaagcg tggcaggata gctccaatca aacagctcag agtcagctcc aaactttaag
      361 tgacatagaa ttgtgacctt tcactaataa ggtacactaa atgaacttag agagctgagt
      421 gtttctggga ggctgtggaa aatagatatg agcgggttta gttcctttac taaagttctg
      481 aagttaatcc ctgctataca gtataattta atgttttctg cctacaacaa aaatagcagc
      541 tgtcccccta tttgaaatag cattcgcatg atcactacat attcatattc ctatgcatac
      601 gttatcactt aaaaggcttt ctaattacaa caacaagaca aaaacttctt ggattctttc
      661 cagactcact aaatgataaa ataagcttgt actctctcct tcttaatctc cgtaaagcac
      721 cttggagcct catctccgaa atacatgcga atgaatgtga aaatgccatt tagagatgca
      781 ggtgtgacat ttgataagaa acttctggat taaatatgtt ctgctaatga ggatcccagc
      841 tacccccatc agggctaact attggttgga ttgtgtgtga gctgataaca ttccacatgc
      901 gaacattcaa attcattatt aataaacagc ccaagtctct atcagaaaag tctggatcct
      961 ttagcaagtg agggatgttg cttctcatta ggagaagaca tcaaatcttc cagaatttag
     1021 caatttcatt tttggaacca atttctaaca gtgtattaat ggtgcattga aaatctgaac
     1081 aaagccttca tactttttat tcattttgta aattacagta atctaggaag gtttgactaa
     1141 gctactggag caatgggcgg taaagacatt gtactgaagc attgcagttc taatgatttt
     1201 tttatgatta aacgtttatg aggaaaaaat tcatccttgg agaggaaaat taactttcgg
     1261 cttgtgtgtt cattatcttt gataccaaag tgaaatgggg tttcatgttt taaaagttcc
     1321 catctttttc aacttgcaga tgttaaggga aatctgaaaa tgaacatagg gcatgtttta
     1381 ttttgtcagc taatgtttta accaaaaaaa aacacatgct tttcattttt cactttatat
     1441 atcacaaatg catttgggag gagaattagg tgtgccagga tcctttatgc gtattactat
     1501 ctctacatgt agtatgtttt tcatgtgtgt ttatctggtt tatgttttca tattca
//
LOCUS       KCLA01000709            1037 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11482upu ultra-conserved element locus uce-2112,
            sequence.
ACCESSION   KCLA01000709
VERSION     KCLA01000709.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11482upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1037
                     /note="ultra-conserved element locus uce-2112"
BASE COUNT          296 a          176 c          239 g          326 t
ORIGIN      
        1 tttaaattga ctttcttggc aatatgagca tttctgcttt ggcataagta aatagacacc
       61 aatgggttag gttcctgaac tgttggtagg gcagagctgt atgctgttaa caggcaaaaa
      121 atgtaaataa aaggtagagc ctacagagaa gactgaagtg aatgttccat gtgggtggta
      181 aaaggccttt ctggatgagg cctctctgat tctaagaaaa gcggtgactc aactggagtt
      241 ttaatgaaag tgctgtacaa cagcccaaat gtttccctta atcttatttt agctttctgg
      301 catgtaatat ttatatacag ttgtagcagt taaactcatt ttaatggctg catttttatt
      361 taaaaggaaa aaaagatgct ctgtgttacg agcagcaggt gtgtttttaa tctttaatag
      421 gtcaccttcc tcagcgcaag caggcaagct gttattgatc aaagaggttt tgttgggtag
      481 ctctcagatt attgagtgac aaactttatt gaatttgact taacagaagt cagaagacag
      541 ctgaagcata agagcttgca ctaccatcag agtcatttta cgacagccag ggagcaaagc
      601 tcagcgatgg atactgagct ctttgctggc ccttggagat taactgaaca gccttcctac
      661 caattcccaa gcctgtcagc agaaccaatt agattttcaa ccagtagaca agaagggtgg
      721 cacttgggga cctttttgct ttaggtcgaa ggcttttcag actgcgatga gatgacattg
      781 atgatgacac gttgagcatt ggttggtttt aagacaagtt aaattagcag tcttgaaatg
      841 attccaactg tctcctgact tctcactgtt gccatattca gtggatcctg tcaggagcag
      901 gttgatgact taatagtctt tcttgagtgg atttgagcac tttggctgtg tgtttatgtg
      961 tagttgtcat gcttaaaata ttcatataaa ggtttgaaat atttatttga aggagccttg
     1021 tgcagagttc agcacta
//
LOCUS       KCLA01000710             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11498upu ultra-conserved element locus uce-6821,
            sequence.
ACCESSION   KCLA01000710
VERSION     KCLA01000710.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11498upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-6821"
BASE COUNT          174 a          217 c          228 g          208 t
ORIGIN      
        1 tctcaggcgt ggctgctgct ttatcggacc tctcccaagc ccacctatgc aaacagattt
       61 gtaacatttg tgtgcttaac cgtgcatctc ttttacagga atctgttgct gcgtgtgaca
      121 tctcttgcca gctcccagag agaattgatg gagcatacag ctagggaaca ggatgccaga
      181 gaagcacaga gaaagaaatc aggcaatcac caggtaaact caacattact ttgatttaat
      241 tcctttcacc tcgcctgcaa gaccttgtcg gctccagtga ggcagcagga gatcagaggg
      301 actgtattcg tgtgtattaa acgcctgctc ctctcatttg cctccgcagg atgggaagct
      361 tcagcgtcca ttggatatgg gacgagatca ctcggcaacc cttgtggatt ctccttcttc
      421 tagaggggaa ttatagttat ggatttattg tcccggtgca gcacttccac cagcaacagc
      481 agcagcagca gctttctgac tctcttcggt gacgggtatt cttgggtgga taatacggat
      541 tacgttgtta ttgcttaaga atacgcgtag tcgaggagag taccggcggc gggcaggcag
      601 gcaggcagcg cgaccgcccc cagcccacca gctggctcct aacctcctct agttgccaag
      661 gtagcacctt ttccatcttt tcctaagctt cgcaatgttt cactctgtct gtttctgccc
      721 gggagggggt gccccggccc ctgcggggag ggttgtctgt gtgtgcgtgg gttcgagcgc
      781 ggggctgggg agaggctcca catgcctcgc aggaccgacg ggagctg
//
LOCUS       KCLA01000711            1023 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11514upu ultra-conserved element locus uce-734,
            sequence.
ACCESSION   KCLA01000711
VERSION     KCLA01000711.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1023
                     /note="ultra-conserved element locus uce-734"
BASE COUNT          293 a          187 c          255 g          288 t
ORIGIN      
        1 gagacagggc ttcccctaca acgtcggagg ggactggggt tttaatgtca aatcttccac
       61 tgggactgta agggatttta gaagaattat gtctgaatag agaagaaaga gtatcagttg
      121 tgcaaactga aaaccatgct catgtgagag acgttttcct agatgttctt taagccattc
      181 atgtggaatg tatggcaacc atatgtttgg tggcattgtt aaaatagggt gtcttacaaa
      241 tatttagctg tgggaattat aaaatcataa ggcgattaag ttagctagtt gtgaaattcc
      301 aatattgctt tttaaatgac ttcaggatat aggaggtgct aaggttatta tctgttatca
      361 ggaatacagc ggaattgtac gactggataa taactaaaca actgacacaa tgtaaaatta
      421 cattatcagt gtgttaaaac aaaattgcgc cctaaaggag tctacatgcc agctcagagc
      481 tgcagtgtaa ttatgcttaa ctctgataat taaaatacaa cggagatcaa cagaatcatt
      541 ttcattaaga aaattattaa tgatggtggt ataacagtaa ttgattgcaa agcaccacag
      601 gataacttgt gcaggaaaac caacatgtgt aatgtgtggc tgggctggtt gggttgcgtt
      661 tcgtaccacc gagcatcctg cctggccagt gcccgctgcg gggcactcct gctgctgcaa
      721 accccacatc agaaactggc agtatagcag gctgcccttt ggaaggaggg ggatggctgt
      781 tgcagaatag ggctgtggga cagggtcagg tatggctgct gaaaagaagc cagccggcgg
      841 cagagacgtg cacgcttctg gagccgtctg tcatctcatt ttgcatgagg cagtgtttgg
      901 ttttgcattt ccattagtga tttactgatg ttatttcctc ctctgtctgg cctcgctgag
      961 tagtttatgc ccttcgttat ttctgagagg atgcaggaag aggaaaaaaa acccccatcc
     1021 tca
//
LOCUS       KCLA01000712             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11530upu ultra-conserved element locus uce-3582,
            sequence.
ACCESSION   KCLA01000712
VERSION     KCLA01000712.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11530upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-3582"
BASE COUNT          277 a          172 c          172 g          259 t
ORIGIN      
        1 atgcataatc catattgtta aatcctgaat aagtgaaata tcttttcaaa gaagctcaga
       61 agacttacag ctgcttggac agagactgaa atgggatggg cacagaaggg tgttggtaag
      121 agaaaaatga ctgaagttgc atctttgaat gttgatttct cctttcagac atttgaggat
      181 gctgtcaagt caatggagtt ctattgtagt ggttgcttca gtgaacattc aacgctgtcg
      241 gtgagtttgg aattaaagtg aaaaccatcg accgttgatt gtaccctcca gctaaccatc
      301 ctcctcctta cttcatgctt gcaggcctta ccaccgaaga tagcaaccta atcaccacat
      361 gatgtttctc ccccatcctg ccaagcttta caaaaaaggt cacaatcaac attcattgct
      421 gtcggtgggt ttaactgtgt ggacaagctc actgaacaat gaatgcaact gtggccccac
      481 attttacagt tgcccttgaa aggaacatca actctgaaag cagtaataag aagcaaacac
      541 ttcttaaagt ctacattttt tattgtcaga aaagtagttg gggatgttca ctttttactt
      601 gcttgttttt agtgtgttca attagctgac tgagaaaaaa aaaaatcact tcctttttct
      661 ggaatactgt cctcctaagg ttcagcatca tgaacaataa caacgctttt tctgcatgta
      721 tgtggagata acaatagggg gactttgtgt ataaccattc ctagacactc taagcacaag
      781 aggaaagaat atttataccg tattttaact aggtactaac tagtacaaaa atatctctag
      841 acttgtcaca acaaatacaa gtgggagcca gagttgaaag
//
LOCUS       KCLA01000713             997 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11545upu ultra-conserved element locus uce-4978,
            sequence.
ACCESSION   KCLA01000713
VERSION     KCLA01000713.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11545upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>997
                     /note="ultra-conserved element locus uce-4978"
BASE COUNT          236 a          225 c          261 g          275 t
ORIGIN      
        1 ggcggcaggg gagatggcag ggcaggtccc aaccgcattt ggcagagccc ctctaggcga
       61 gctcgctccg ggtctgccta cactatgcct ggctctagct gttgctaaca gttcatcgca
      121 ccagtgcaac caactaatgt ttaatatgac ttgcatgtga ctttgcattg gctgtgttga
      181 gtcagacttg ctgtgtttta actttccaaa accttcaagt gcattttgct gcttcttgaa
      241 actacttccg cgcacgcgag ctctggcccc tgctggccgc gtttgcagga gtgcaaattt
      301 cagaacagaa ggagcccaaa atccaatgct caggagccag ggcttccgaa attgttctgc
      361 aggcactaat ccatcccgaa gtgcgtttct catgaaagct gaactgggga agtagtgtgt
      421 ggtgttccac ccagggggtt ctgatgcatt ccttttgaat aaatttattg ctgggtaatt
      481 tctatgtgac aggagtatat caggcgacag ctagaagagg agcagcggca cttggaaatt
      541 ctacagcagc agctgctcca ggagcaggcc atgttactgg taaagcactg tatctgtttt
      601 gttcagtagc tataggatcc gtttatgcag ccggtcctag acttcgctca gtcgggcgca
      661 gctgcactga cagtgtgaca acaatggagc ttgattaaaa ggccatttgt gctggagtcg
      721 tgggctgaca ggcacacacg agaagtgctg tttggtcaca ctgctttctg ggcagtaaca
      781 ggaggcttta tgttaaagtg gaacagttct ggtgtggtgg tcgagtttct gaacagacct
      841 tggcattcct tgaagaacta gggtgcttac gttgcagatc aaaagcacac atgatatgta
      901 aatccccccc cggatacaat ggcctagtgt tggtctaaag cattctttta tgaactttac
      961 actggattta gtataaagga ctttttcttt cctttaa
//
LOCUS       KCLA01000714             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11560upu ultra-conserved element locus uce-4910,
            sequence.
ACCESSION   KCLA01000714
VERSION     KCLA01000714.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11560upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-4910"
BASE COUNT          240 a          136 c          163 g          265 t
ORIGIN      
        1 tatcagctga attgagcaga aatgtagtag ggataggatc ctgcaaatat ttcagggaaa
       61 ttattcagag aagtttctga cagtacaatt ctaaagaaac agaaaataca tttcttttga
      121 tggtctgaca aggataacat gtaattctga atccctgcat gctctattga tatgacccat
      181 aaaaggccca cagttccatc tcttgtttgt attcttcatt ttattatcat tctctttaaa
      241 aggtcagcag tactggtctc accgagacca ttagcatgct tttgcttatt taattcacta
      301 actgctgaag tgcatgctgc ttttagtggc actcatacaa ctccaagcac tgaaaggttt
      361 ggtttcatgt acttgaactc aagtgacaca aatatttcag tggtgaatca atactgggaa
      421 aggatggccg gtaaggtagg gagtgtttat agaagatgtt tcatcactac tagtaaaaca
      481 tgtcttattg ttagttcagg aggtgctggt atttagctct ttgaaggagg tttctaacaa
      541 gccaacaact ttctgcctgc tagtaagata aaattttaaa aattgcacag ggttagagat
      601 ggagctcttg caagatgtgt gtggattaac tgtttaggaa atctggtttc catagaaaga
      661 gatttcttct gttctctcat cataaaggac actgactaca tggaaacgtt gattgtaaag
      721 tactttttac tgtttcattt gacctttgac catttcatgt ttcctaaaga agccatgttg
      781 tgaaactttt aggagcacct ggaa
//
LOCUS       KCLA01000715             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11575upu ultra-conserved element locus uce-4222,
            sequence.
ACCESSION   KCLA01000715
VERSION     KCLA01000715.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11575upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-4222"
BASE COUNT          128 a           88 c           60 g          122 t
ORIGIN      
        1 tgcaatgtac catgtatgta aaagccagta aggtcacaat aattgaatct aaataagttt
       61 actgaaggct gcagagggca aagaaaaact tgttctctct ttcaaccttt gtattaattt
      121 tccttcaatt caattccatc taagtctggt gcactctagt tttacaattc aattggcatt
      181 tttaaccagg aagaacattg cttaaaaaca acttattcga aaaactacaa aaagtaattc
      241 catagagact tgccacttga ctgacacctg tcatctcatg ataaatgact ccattttctg
      301 cctctcttgc cttctgccac tccagcaatg gtcatttatc atcatctctg tcagcaatgg
      361 aaagcagcac tgacagtgca agtcagcaaa catttagc
//
LOCUS       KCLA01000716            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11591upu ultra-conserved element locus uce-5849,
            sequence.
ACCESSION   KCLA01000716
VERSION     KCLA01000716.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11591upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-5849"
BASE COUNT          355 a          202 c          173 g          329 t
ORIGIN      
        1 aagagaagag ccatgtaaaa gcactgagtt gctattcgaa acttggacaa gtaggaatat
       61 cacatataca aacgtgacag ttaatggaca taactgccat aagcagtact ggcaacaaag
      121 gtattgctct accggttggc ttaccttgaa tggcaaattt gatttgctgt acccattcct
      181 ctgcttcttc aggactgcca gctgtaaact attaaatgcg tattaataac gactagcagt
      241 aatgacaaaa acacaactac aatttcatta gtagtgaaaa agagggacca tagcattctc
      301 atcacttcct caagaaacca ttagtaattc ttttcatgtc ttctggtact tttcttgcaa
      361 ggatgcttct tataatgtac agctaatttt gacaaattta cgtaattgaa ggagaggatg
      421 atggatttga aactctgatc agcagctggc agctgtgcag aaaaaaagct gcttctcttc
      481 atcaatgtca aagccagaac tgatgaacaa aatttgccct tgacaattag aagacaccca
      541 tgaatttctt tagactgctg ggtacagttt tcttaaaaat gttcttgtca gactccaaca
      601 cactacctga cagcttaatt aactggcttt caactgcaat ctcagatatt taaaacttat
      661 taaacttaca ttccatattg atgtctagct gatagatctg tgaattgcac agctgatacg
      721 cacctttacg taggttttcc ttgcaaagcc atgaccaata caatacgtat ttaacactga
      781 tacaggttaa cttcttttat tatctaattc atccaagaaa tcacaggggc attccatacc
      841 atagatatta atgctaacat tgaaatgatc aatagataaa gatgatagat ttccttgctt
      901 ttgcccaaaa tgattgtatt tgaacacatg catgcattta aaatttcccc cccatataca
      961 aatatacaat ataagaaagc aagggtatcc tttcatttat atgtcagtga aagttgtttt
     1021 actaaaatgt taattcagta actggaattt tagcaattt
//
LOCUS       KCLA01000717             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11607upu ultra-conserved element locus uce-5103,
            sequence.
ACCESSION   KCLA01000717
VERSION     KCLA01000717.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11607upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-5103"
BASE COUNT          257 a          143 c          124 g          240 t
ORIGIN      
        1 atttaaatta attccttgat cattaagagc atttagtaac actactgact tcagtgcatt
       61 gaagcttgcc tttgcgaata agtgtatgaa tttgaaaata tctaagaaaa cagataccac
      121 ttaagtagga cattatgccc tcctacgcat gaagaactga cacactcata actattgcca
      181 cacttgcagc tactcctaag gatctgccct gcttagatta ctttcaacag gattactgca
      241 cttactgagc ccctttaacc aaatgcctta tgtctttgtt catatggttt taatatggtt
      301 ttaaccaatt gcaaggttat ttataagttt gcaactcccc agtagttaga gttatgaagc
      361 gttcagactt aagcatatcc agttgtgtgg taacccaact actgctttta tgcggttttc
      421 aactttttat ccatgcaaaa aggcatgatg cgtggcagta tctgagaact tgctgattaa
      481 ctctttgttt cagcagcaaa ttcaaacatc agcctgcatt aaagttacac accaactaac
      541 aggtaaagat ttaaaaatat ggaattccac cttggactga tgagaattcg aaaacaaagg
      601 aactatcaat taaattaaca actggtaaat taaaagcaaa caaaaagagt tactatttta
      661 cactctgcat aatacagctg taaaattcac tagaggtcag aaagagtcca aagattggtc
      721 tatcactttt ttttaaaaga gctggataat tttatgattg ttaa
//
LOCUS       KCLA01000718             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11623upu ultra-conserved element locus uce-2618,
            sequence.
ACCESSION   KCLA01000718
VERSION     KCLA01000718.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11623upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-2618"
BASE COUNT          236 a          191 c          215 g          286 t
ORIGIN      
        1 agcagcagcc tgttgcatag cctctcccac actgttcagc acagccttct cttgtaaaat
       61 aaactaccct gcttttccag ctaccacagt aaatctaaca tttctatccg tggagaatta
      121 atctacaccg tttcattttg tgcatgcttt ggtaaacagc tttccacgtt ttgtgtggaa
      181 atttttgcgg cagttcctga tggggagagc gctggtgaca gtaggtggca gtgcggctct
      241 tcctttgcag acacggagag cgcagcgagc atccagccgc tcccaatctc cagatgcagg
      301 cctcggggca gcgtcgggcc ggcaattcac ttctcattgc tgaggatgtc tcgttaggag
      361 attaactgtt taaaatgcag ggctaatgtg gaagttttaa ttgggaaatc ctgtgcatgt
      421 taaattaatc ttaagtactt ttatctggaa tgcctgcttc ctttccacag ccctttgtgc
      481 ttttaaatac cttcagttcc tttgcatctt cttaaaaaac ttgaaataga gaaacaatgc
      541 tttttgcatc ggagtttgct gaaaattcct taaaaagctg tttcggaggc ttccagcaga
      601 ggttccaaaa tgcagtgtga gctgaatggc agcagcgctg tggtgtaatg acagttgtat
      661 ctgtggagag aatgcagggc aaaggtttca tcctaaccac agtttatgtt tcatggataa
      721 gcacgttatg cattaggaaa tgctgagaac aagtgggatt tgcagtttca aagaaaagca
      781 gatagtaact cggctaagca tttaggttga ggttttcaaa gtagccctgg ggattttaga
      841 gattggaatc tcaggctgct tataaaatcc tcagtcctta ggcctatttt cttttcttta
      901 aggggcttgt acatctttta atttgaac
//
LOCUS       KCLA01000719             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11638upu ultra-conserved element locus uce-1188,
            sequence.
ACCESSION   KCLA01000719
VERSION     KCLA01000719.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11638upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-1188"
BASE COUNT          159 a           67 c          115 g          146 t
ORIGIN      
        1 ccttgccaac tcattcctga caatgttaat gattcactat aaagcagctt ctgtgctatg
       61 atttgtgaca ttcaggctgg ttagatggga ggactaggca gctttctggg gagtgttttg
      121 gatgcagaaa tgccttgaag atagcacttt attatattta ggacaagtat gacatcccac
      181 ttcaaggaaa aggcccctat acatattgag aagggatttc tatggtttaa gtggggagaa
      241 gaaggttagt ttaaaagaat gcctctgtgt tttttgagac gacataaaga taggaggtag
      301 agaaatggag gcaggaggca gaaggattat ggataatgga agaattttgc ctgagggtat
      361 gtgcctgctt tgcctattcc tgtataacta gaatatttat aattcaaata cttatcttta
      421 ataattaaaa accaaggaat attaaagaca aaaggtagag aatattatgt acacatatgt
      481 aggcatc
//
LOCUS       KCLA01000720             267 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11653upu ultra-conserved element locus uce-2868,
            sequence.
ACCESSION   KCLA01000720
VERSION     KCLA01000720.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 267)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 267)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11653upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>267
                     /note="ultra-conserved element locus uce-2868"
BASE COUNT           73 a           54 c           66 g           74 t
ORIGIN      
        1 gctaattgat aggattgaag tcattgccac caagagcccc accagtaagg gagtattagg
       61 atgaaaaaag attttcactc actgggtggt ctgttcgctg ccaagttttt gaagtggctg
      121 ccttttataa cttctgctga taatcttccc gtggtagcgt tataaaggag tccaacgagg
      181 atttctggag ctgagccatg taccagagac tgacaagaag aggtacttcc actgcaggac
      241 acttctgaca tgcttatttg agagtca
//
LOCUS       KCLA01000721             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11669upu ultra-conserved element locus uce-6457,
            sequence.
ACCESSION   KCLA01000721
VERSION     KCLA01000721.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11669upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-6457"
BASE COUNT          215 a          103 c          100 g          183 t
ORIGIN      
        1 ggtaattata attgtgttat atgtatccaa ggtgcagaac tcacatgagg cgatggcata
       61 aaagacggtc ttccaaatga gactgtaggg cacttagata aacaaccgca tgcagaatga
      121 aaagcttaca taaaagtgtg tattatgcag atgttagaaa cctgtgtctc tgagaagaca
      181 ctattttgac cataatgcat tctgtcatgt gagataaaat gcagagaaca tttacatttc
      241 tcccactcac tgagcttcta ccgcacggct tgcatttttc tcacatcaat agacatcttt
      301 ttaaacatta tattcatgtc tgtctctctt gatggcaaat aaaattcaat aaataacata
      361 ctttatgata aatatgttag atttaagaag cagttgtgat aaaatgtgca ggttttcaaa
      421 aatgatttct taaaaacaaa taaatttaac aagacatgta cacaagctcc aaatatatta
      481 atatattgta gatgatgcac aataacataa tgacccaaaa gagcatttgc agtttttcat
      541 actgcttagc ttactgataa gtaagacaaa taatcagcag aacttggact cgctgcctct
      601 g
//
LOCUS       KCLA01000722             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11685upu ultra-conserved element locus uce-5133,
            sequence.
ACCESSION   KCLA01000722
VERSION     KCLA01000722.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11685upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-5133"
BASE COUNT          198 a          115 c          118 g          160 t
ORIGIN      
        1 attttagtaa agatatgttt tagcagaatg gaatattact ggagcaataa gctgcgtgct
       61 tcccctgatc tctatcatcc atatattttt gtagaaggaa aacaatttag aaccatgaat
      121 tgattagtga aagtaatagt acagctacag tactctcctc tcccagaggg aaagcttctt
      181 tcctttttaa aggggaaaaa ttaaaaatac aaaaccaaga ctgactgaga cttacagctc
      241 attaaagctg gggtgatttc cactatacag aattctattg atctccatag tccacagtag
      301 acaaaaaagt gtggtcaggg aggggatgat ggatgcctct gccaatagca ctgaacaaac
      361 ctgttagcta attgctacca aagacaatta tctccgcatt gtttcataat ggaaacacat
      421 tacaaaactc taatatacac acagggaaat ttgatgattt gactgcggag ccatgtgcat
      481 tgaatttcat tgccaaaggc cagccgggtc gctgctgtgt gggggaagaa agtgtcagaa
      541 tacaagccac atccctaaga tcagtttagc aactccactg tatctcaaga a
//
LOCUS       KCLA01000723            1201 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11699upu ultra-conserved element locus uce-3078,
            sequence.
ACCESSION   KCLA01000723
VERSION     KCLA01000723.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1201)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11699upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1201
                     /note="ultra-conserved element locus uce-3078"
BASE COUNT          398 a          213 c          208 g          382 t
ORIGIN      
        1 gacaaagagg gaagtaacac aatttatgta aacaactatt gcctgatgtg atggtcacac
       61 aatcagtgtt aaaatgccac tggtgttgcc tacagcccaa tttttatgtt ccaccaaagc
      121 cagaattgtg ttggtaaaga attataaagg caattttctt agcacaggca agaccgtgac
      181 aatcagaaat atttgaactt gatgtttaat tatccctggt agtaatctat aagtgatttc
      241 cactcaacaa tgtctaatta tttaattatt tgccattatt aatgaaatta aacaactcaa
      301 aacaaatagc tagaatgact gttttgcagg aagctcataa tcatcaattc atacatttag
      361 aaatcttcct aaaattatat taagctggcc tgttgaactt gaaaggcata ttttatccca
      421 atcaatgcat aaaagtaaaa ttatccataa ctaagacatg tttctctgct gtacagttca
      481 gctgtaatga tccccacaca ctgcacttgc acatcaatta tgataatcat aatcacggtc
      541 gttaagctga atgttcatta ttatcaggat gctggtgaca gcagattcaa tcatcgggtg
      601 caatgggcag gcagtcacag tcccacccaa gtttctgcag acagcgttgt gccacattaa
      661 atctatgatg tgttccacat cccactccat tccaaaagct gtagacggta aaggtcaact
      721 ttatgttctg tgcaatatgc ttaggttctc taaattaatt ctttgcagga ctgggtattt
      781 ttatgctttg tagataataa aattctgttt aggaccaaaa tgtctgtgca aataatgaaa
      841 cagtgatgct gttgcactgt aattcaccta taataagaca tcagagcaaa ggatctatca
      901 ggaagggaca tctgaaaata tcgcttgctg aattttgcaa ataagagagc gttaaatgct
      961 gtcattaagg ttagtttcat aaaatgcata tgcaaactaa ttctagtacc gactaaaggc
     1021 tataagccat catctctgcc tcagtaaata tgaatgtatg aaagtgtttt gacaactgaa
     1081 agattatagt tagtggattt gatcctttga ctgtccagct atattggaac ctaacattgt
     1141 aattcaaatt catagtggtt ggtaattttt tttattgttt tgctcataaa atccatcaaa
     1201 a
//
LOCUS       KCLA01000724            1074 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11715upu ultra-conserved element locus uce-2714,
            sequence.
ACCESSION   KCLA01000724
VERSION     KCLA01000724.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11715upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1074
                     /note="ultra-conserved element locus uce-2714"
BASE COUNT          326 a          202 c          209 g          337 t
ORIGIN      
        1 atatttaaaa gcaggcaatt atcttttact aagacattcc tcatcctaag aaaacacact
       61 tgataagcta cactcgattg gtttcgtgga aaacatttag tccaatttat gttcttttaa
      121 cagagcttaa ttttattgtt cagacgtgag tctgtgtatc taaatgtttg ctttgctttg
      181 atttcagggt tctccatttc tgcaatatga agtgtgtaat cactaagtgt actttcttct
      241 tcatggaaag atgtcagtaa acttctacta gccatccata agcttttggc aagggttgat
      301 acagctgcgg tatgaggtga ttaatggaag gcaaataaag gtgtaattaa tccaaccaca
      361 tcaaaaagag aaaataaaaa aactatgcag agactgacaa gaaaagccga aagtccttgt
      421 gctttggcac caacgaaaac agaccacaga aaaaggctaa agagttcacc aatgtgctcc
      481 aattaatctg tatgcgcgct gcaatgctct ttagtttggt tcatttaaat ctgaaattcc
      541 cttccccgtt gatgtcagct agttagccaa gatagtgcat taccgctatg atcactgcag
      601 cgcatataat ttagatttat ctctttaggg actcagctcc accccctgct agctaatatg
      661 ctcaccatgt ttaatgatgc aaaaaatttc cctgagtaca ggttatttat ctttatcagg
      721 ggctgctttt ggctggctgt cagttatcag ccagaatatt tgttcctaaa tggtttgtac
      781 tcatccatat tccagggcaa ttctgaggcc cacattatca ctgatgtttg caataaaagt
      841 gtttcagttc ttcagataca ccttagtaat gctgatttat gagtccggac tggctatatt
      901 tctgatgcag tgatatgaac cctgaaatat ctgtcatgga agtgaaatat ctatccgaaa
      961 cctcagaaac aaaatccgct tgtaggggtc tcgaaacaat atgaggaatg aagatatttc
     1021 tttgaataca tttggagggg aatgagtcag aggtgaggtt ttcaactgaa gatc
//
LOCUS       KCLA01000725             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11730upu ultra-conserved element locus uce-1181,
            sequence.
ACCESSION   KCLA01000725
VERSION     KCLA01000725.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11730upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-1181"
BASE COUNT          146 a           60 c          134 g          113 t
ORIGIN      
        1 ggagagcggg gaggggggga tgaaatggtg cagtgaatat ttattaggga aaatataggt
       61 tctcaaaacc agaaataaaa cagggtaatg gatggagggg aagaagagat ttaacaccgg
      121 aataaatatc aaaggtgcaa agaaaaggcg aaatacggcg ttggaacaaa agctgcgaat
      181 tgggccccgg tttaatgcgt ccccggggga ggaaaggttg gacagactgt tggaattgag
      241 atactacttt tagtacacag cccctgtaat gctgtcagct ttatttcctt tgacaaatgt
      301 gaaataaaat ttgtcaaagt tagggcttgg taagtttgct attgaaaatt caattggtaa
      361 taactagtat agcccggcac tcgggagatt tttaaaggga agggatggtt gagatgctgc
      421 gaggagtgtc ctagaggttg tagatcactt tga
//
LOCUS       KCLA01000726            1037 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11746upu ultra-conserved element locus uce-315,
            sequence.
ACCESSION   KCLA01000726
VERSION     KCLA01000726.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11746upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1037
                     /note="ultra-conserved element locus uce-315"
BASE COUNT          334 a          169 c          210 g          324 t
ORIGIN      
        1 accacttcag tgacataaag taaatgtgtc tgtggcaaca aagccctttt aatattgcct
       61 ttaaatagta agacatctca gcagagagac actgtattta tgtaaagtgc tgccgtcagt
      121 gccttaaaca atttgaaaaa acttctgctt agctatggga atatggatgt tgatatatca
      181 gcatatatac acacacacaa atatatttca atgtggaaat atttaattaa cctgtctgta
      241 agcacaaaca gcaaacctgc cctgaatatg ttatcactta atttaccgaa cattgcaccg
      301 ttgtccattt ctatctcagc atagagaagg gagagatatt agttgcatca ctgtagagca
      361 atgagatttc tgtaagttgt gatctgctgg catgtaataa ctcgatctgc ttcatgcaga
      421 caaaatatat taaaagtatg gacgagtgaa gtttgtgccc cagggagaag gcaagataat
      481 gcattgaaat tgttcagagg tagttagatg cctaatggtc taatatgtga gctatgtgag
      541 gtctggggtc tggttctcat aaattctggc tagactgatc ctgtaatttc aagcaaagga
      601 taaaagcgtt aaccagagtc atcagtgttc aaggtccatg atgctggata ttattcatgt
      661 aaagattcaa gaaaaacact aaaaggaaag ctctggagca tatgtgtttg tgtgtgacac
      721 tatacatata taaaaaagat gtgttatatt cttgtgtgtg cctgtgtgtg cagatgtatg
      781 cacagaagca tgcatgtggt gaatgtatac attagcatat gggcaggtac acagaaatcc
      841 tgctaacaac tggatagtca aaataaggct ttctgctgtg tgtagtattt ttttagtcag
      901 atcagcaagc taatttatgc aaagacaaaa tactaattct attttactgc gctgctttgt
      961 aatatacatt tggtatcaac aacattttta tgcttggcat ctttaattcc tctaagacaa
     1021 ctcgtgttaa tgcatat
//
LOCUS       KCLA01000727             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11761upu ultra-conserved element locus uce-2716,
            sequence.
ACCESSION   KCLA01000727
VERSION     KCLA01000727.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11761upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-2716"
BASE COUNT          216 a          153 c          195 g          237 t
ORIGIN      
        1 ttgtggaaag gagatcctag gtgtcgtggt cgttttcagc gttagctacc ccaggctagt
       61 gcagggcatt atataggaga ggtaggagat ggtgctgtgg tcggtgatgc cagtgtaggt
      121 attctaagca gcgttaagac tctgaaggaa agattctgag gaggaacgtc cctatttgat
      181 gttttcgttt ctcttccgtg ccgtttcaac ccagcttatg acaaaaagtg agtcagactg
      241 tgagctttac ccctgcaact tagttgtgtg tgtggttttt tttagggaat ggaacagctt
      301 ttagagagac aaagagaaat gaaatcactt tcaatgaaag aaagaggcct cattatagtc
      361 accaacagca gttattgaca gctacacttc ctattaacaa ggagcattta agagtttggc
      421 tgttggatct ttggacttga tctaatttgc tagcattaat tagtttcttt tgagcacaga
      481 cacttggtgc tcacagctat agatttggac gactaattag gacagaaaat tgaacagaat
      541 ggggtaaagc attaaccttc aaccattacc agctggggct ctgataaaga ccacagagtc
      601 caaatgctcc tattcatgta aagagtactc taatgaatat caatttcagc caggttgctg
      661 gatcctaaag agctgctttc attgtgatcc tcttacctgg tagagatttc ctggtgcagg
      721 tactgaagca gtatggctgg gtcagagcgt agagacgaca gcttcaccaa gttccctgtg
      781 ctctgtctcg tctttccact t
//
LOCUS       KCLA01000728             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11777upu ultra-conserved element locus uce-5961,
            sequence.
ACCESSION   KCLA01000728
VERSION     KCLA01000728.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11777upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-5961"
BASE COUNT          208 a          134 c          161 g          234 t
ORIGIN      
        1 gtctggtttt aattgaataa atatattaca cagcaggaaa gaccattgtc tttgtggcct
       61 tgctgttgca gtctgagaac ggcgactatt ttcttcagct gatgaaggga gcaacatctg
      121 ctgttggttt cctgcagctt gccttcttca cacgatgcat ttagatgcac agtctgaatt
      181 cctcgcacag aaagggagaa ttaaaaaaag gccccttcct tcgaggcagt ggttatgctg
      241 tgacaacagt gggctgggcg aaattccgct atgtcaagca agaactataa aagtagatag
      301 atttcactct aagcttcatt ttattggata ttgtaattga catatagttg tcatttataa
      361 tcatctgtcc attcctggga gtggggagca gtaaagttaa ttgtggctgc tcatttgcat
      421 taatctcacc tctgaagggt acagtaaccc attaatatca tgtcatgatg aattatcaca
      481 aataacattg aacatattga ttaatgatct ctgagatttg tatctcgtta aaacattttg
      541 ttagctcttt aaacttttaa gcaggcagcc agtgtacgag ggagagggtc agagatcagc
      601 aggaggtgag gaaaagttcg gcgtgcactt tgggtcggta attaaaactt gtttagaagg
      661 ttcacattca tttctgaagt gcttccccct tctaatggtg tacagctcac aagcttttta
      721 atcataacaa ttgtctt
//
LOCUS       KCLA01000729             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11793upu ultra-conserved element locus uce-733,
            sequence.
ACCESSION   KCLA01000729
VERSION     KCLA01000729.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11793upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-733"
BASE COUNT          188 a          100 c          116 g          194 t
ORIGIN      
        1 gccgtccgtc cgctggctcg cagtcaagga agggcgccga aaagcttggg ctgtggctgg
       61 gcttggtttg tggaagtatg cggttttcaa agagttaatt ttctttccat aattgttagc
      121 tgtaatgtgt ataagacctc caccttgata cgattcctag cagattaggg atattagata
      181 atttccttct atttattgta ctagtgcact gtattatctt tctatcactc agataattac
      241 taaggaaatc tacattaatt ttttttggct agcacaagga actgctaaac actggcgtga
      301 tatattgatg ttttacacaa caaaagtttt cctgctgtca ttgtacaata aataaaaaga
      361 tatttatcaa aatgcaaagc ctttcatgga ttttaaagaa caaagcaaat aaaatacgag
      421 atgagcatgg cagcgaaacc tagaggcttc cttaactgaa caaaattaag gactctgaag
      481 cctggagtac tgtacatatt aaacactcac attcaagtaa gatgttgttt gctaaattat
      541 gaatgtgtgt aattaaaatc tagtggctgt tcctatgaaa gatttacaat gttatttc
//
LOCUS       KCLA01000730            1001 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11808upu ultra-conserved element locus uce-649,
            sequence.
ACCESSION   KCLA01000730
VERSION     KCLA01000730.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11808upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1001
                     /note="ultra-conserved element locus uce-649"
BASE COUNT          266 a          237 c          183 g          315 t
ORIGIN      
        1 cacaagatga agtgacctcc aagtggctta ctgcttttca ttaatttctc tgtataattg
       61 aacatttttc ggcatctcat ttaacaaact gttaagctcc ttattgcaca gaagggccat
      121 gtgatgtgca gggattctga aatgcttccc ctcattcaca gttctcctac taatatcctg
      181 ggcattatta gtagttcaca aagccagcac attttctttt tgataagtgt ccctgttctg
      241 ccctcctttg tccacctcca aatgccgcct agtacttaca aagaataaaa ctgcactgcc
      301 taactagcct ggtgctttgg attgctaccc ctgctcactc agttgcctgt aaggggatgt
      361 acttatatca atgaaagata aatcccagct agaaatacag gtccctgaca acctaatcac
      421 tgaaaccctg tcaagtaacc cctaatttta aagcgagtgg ttaattccca gcaaattgat
      481 ttattcactg tttgaggttt ggtgagttgt gttgttcatc tgttattacc aggaactcag
      541 ctcagcctat tcatttagac cactgacaca acacagtgca tctcccaaga aaatttcctt
      601 tgtcagcaca tctagaattt gctaattaaa tcaacaatga cattattcac tttctgaaaa
      661 aagcaacttc tttctcctgc ccccttaata cacgtgtgtg tgtgagcacg cacacacccg
      721 agcacaggtt ttaactggca cttgtagatg tgttcagtct gcagctttct taactgtttt
      781 agccagctct ggatcacctg ctcacctctg tagatgtacc atctatatgt ccataaaact
      841 ctctaaagtg tgtgtgcacg tgaccagagc aggggccgtg tgaagttcat aagcaattgt
      901 gacccttact tcttcagagc acagtctgaa gtgtgaattt tgttaaaata atagggttgg
      961 ccagcaagtt cttttcctgt ctgtgttatt gcggcacaag t
//
LOCUS       KCLA01000731             987 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11824upu ultra-conserved element locus uce-2418,
            sequence.
ACCESSION   KCLA01000731
VERSION     KCLA01000731.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11824upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>987
                     /note="ultra-conserved element locus uce-2418"
BASE COUNT          263 a          218 c          175 g          331 t
ORIGIN      
        1 cactgaggac cacactgtca gcagatgtgt acagcttcat atatttttca agatacactg
       61 gctacctgtg tgataagcct catcttatgc cctatattca gcttgcttcc agcctgggta
      121 ttatttgttc cctggccctg aattatcttg gagcagtcac atctgcgatg ctgtgatttg
      181 gtgattattg ttcatgactt ttttctccat ggaaaagaga aacttcctcg tgcctgggtt
      241 ccactgttcc aggcgtatgc accacaccgc atttttactg tctactgata ccctttctga
      301 ggttaatcta ttgtaaaatt agattgtaaa aatggacaca gtttccacat ttacatgcca
      361 gtgctgaagg acttgtggaa taattcaaat actgtacgat tccttttgca gaaatcactg
      421 caaaattcat ttgtaagtga cacgtaaacc atgcaaatta gcatggattc ttccccagtt
      481 caattcatca ttcaaaggtt gttacccttt ccaatgtgat tgccttaaga acacagattg
      541 tcttctcttg atggtgaaac tgctttaatc cccttctcca aaggtcaact aatctccagt
      601 cttaagtgca atagatgcaa atacagttct cttgcaatgt tccttctaat ttaattctct
      661 cctaagcttt catgtataaa cctagtaatg gatcaagttt ggaaggggtc aaaaggtttc
      721 tgttccagta aaatttaaat tgacatcaca cactgataat ggtttgcttt acttcaccat
      781 aaacactagg tacttctcta tcggcgtatc attttgtgca gcagtgtggc gattccagac
      841 agcagcagaa gacattcttt gtcttgttgc aaaagttagt gcccacagcc tgtgatataa
      901 gcagaaacat gctggtttta attcacagtt gttatgcagc atctttggcc cacttgttct
      961 attccatcac ccctaattgc atttcta
//
LOCUS       KCLA01000732             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11840upu ultra-conserved element locus uce-7287,
            sequence.
ACCESSION   KCLA01000732
VERSION     KCLA01000732.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11840upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-7287"
BASE COUNT          294 a          126 c          131 g          296 t
ORIGIN      
        1 tagatatgcc ttttactttg tggtacccta ccattaaatg ataccatcat tttttttttc
       61 tgcctaaata aattctaatt cttgtcacct actatctgta caggaagatt tgagacatta
      121 ttcctaattg agatttttac tgaatatctt ttaaagataa atttgtttta ttctttcacc
      181 cactatttaa aaggattttt cacattttca tcttctaaag gaattgtcaa tgagaaacga
      241 aaactgcgta gactatacat taaaatcact ttagttttta agctgtcatg aactgtttca
      301 aaaaatgcta agttgctatt gtttaatgtc tgtcatttta taatgcttta gaagttatct
      361 atcctgtaaa attattaact gatgctaaaa ttgccttgta agtattagga caatagcaat
      421 tttgtaacag ctgggacact gccaatgtaa gataagtaca ttttgctctg tagattcata
      481 aagtgctttg aaatggtttg taactgatgg atggatgcat tttctaagtg tagaaagcaa
      541 tattttgtag aaggaaatgg cttgaaagct gacacacatg catgcaaatg ccattctctt
      601 cagtaagtaa tttgcttttt ctttcaaaag cataaatggc atagttagac acattatttt
      661 gtatattgca cataacaata caagatgcac aaaaacagca agtacaaaac atttcatatt
      721 gatagaggaa cccatggctg tagtatatga ttagcataaa tgtatacaca ctgaagaaat
      781 gccttcagga ttaaaaagta aagctgaaaa caggaaaagt tcttctaact tcaagaaatg
      841 aaaatat
//
LOCUS       KCLA01000733             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11855upu ultra-conserved element locus uce-6198,
            sequence.
ACCESSION   KCLA01000733
VERSION     KCLA01000733.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11855upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-6198"
BASE COUNT          155 a          112 c          106 g          166 t
ORIGIN      
        1 ttctggatac taaacgctct tcctcatctc tgttgtaacc ttttaaaaca agcatgttga
       61 gcacctcgtt aaattaactc ttccattaat aacggggttg atttgggggg atcagctttc
      121 attcttgtgt gaatgtatac gtacagacca taaacagcct ctaattaatc acatgtggat
      181 tccgatacca gctcgtacgc cataaaccaa cgctgaagtg tataaggaac tgtcagtcag
      241 atcaaaagtc aatccaaaat catcccgctt gcagagcaga gatgctgtca cacttagtta
      301 gccatacatg tttaaaacag caaccaaact tttcttctaa ttgagcatga gtggaaaggc
      361 tgtgcacttt gatgtcttgg cttttgtcag ttgtatagag ctaaaaacaa cagggttccc
      421 cccttttcct tcttctgttg gaaataggag acattacttc ttattgaaaa tatacaggta
      481 ggtcaagctg tatttgtgga gccgatggat gggtttcaat catgcatgta atcgcttac
//
LOCUS       KCLA01000734             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11871upu ultra-conserved element locus uce-4051,
            sequence.
ACCESSION   KCLA01000734
VERSION     KCLA01000734.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11871upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-4051"
BASE COUNT          123 a           76 c          105 g           80 t
ORIGIN      
        1 agaatggctg aatcatctag aggccagttg gggccagaaa caagtttttt ccctttttcc
       61 cagctttggg agcagggggg agggcaaggg gaaagggaga gagcaaagag tggttggttt
      121 caaatagcaa cattgtccta aagggtgaaa gggaacagat ggccatggag aatgcagcct
      181 taaagcccta aagaaaaggg ctattttgac agatcttgct gtttcctatt caagcatgaa
      241 cactctggca tggagagtta agacgataca aggagcaacc tctgttccca gcaactgact
      301 atggacaact ggcctctgag gctctctgag aaaaacaaca tgagacagac agacaaacag
      361 atatggcaat gagcccagat ctca
//
LOCUS       KCLA01000735            1117 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11887upu ultra-conserved element locus uce-2341,
            sequence.
ACCESSION   KCLA01000735
VERSION     KCLA01000735.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11887upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1117
                     /note="ultra-conserved element locus uce-2341"
BASE COUNT          305 a          255 c          242 g          315 t
ORIGIN      
        1 tggtgaaagt gaagctaaaa gaataggcct tgcagcttgt cttatgcttt ccttatttgg
       61 atgtgtttgc ttttgttttt tcttaaagga acaagagcac tcaaggtgaa ggataataat
      121 cgactagaat cagcactttg aatgaaattg tgtttccctg tggcatcttg aacactttct
      181 tcttctgatt ttgaaacaga cttataactt tgtggcatag cagctatgca gcttgaaatc
      241 caagtagcac tcaattttat tatttcatat ttgtacaata agcttcccag acgacgtgtc
      301 aacatttttg gtgaagagct tgaaagactt cttaagaaga agtatgaagg gcactggtat
      361 ccggaaaagc catacaaagg atcagggttt agatgtatac atatagggga gaaagtggac
      421 ccagtcatag aacaagcatc caaagagagt ggtttggaca ttgatgatgt tcgtggcaac
      481 ttgcctcagg atcttagtgt ttggattgac ccatttgagg tttcatacca aatcggtgaa
      541 aagggaccag tgaaagtgct ttatgtggat gataatgaaa atggatgtga gttggataag
      601 gaaatcaaga acagctttaa cccagaggcc caggtgttca tgccaattag tgacccagca
      661 tcttcagtgt ctagttctcc ttctcctccc tttggtcact ctgctgctgt gagcccaact
      721 ttcatgcccc gctccactca gcctttaacc ttcaccactg ccacatttgc tgccaccaag
      781 tttggctcga ccaaaatgaa gaatagcggc cgtagcaaca aggtcgcccg cacctctccc
      841 accaaccttg gcttgaatgt caatgacctg ttgaagcaga aagccctctc ctcctccatg
      901 cactctctct acgggcttgg cttaggcagt cagcagcagc agcaacaaca acagcagaag
      961 acttctgccc tttctcctaa cgcaaaggag ttcattttcc ccaacatgca gggtcaaggt
     1021 agtaccagta gcatctttcc tggtgacagc ccccttaacc tcagtcctct tcagtacagt
     1081 aatgcctttg atatgtttgc agcctatgga ggtctaa
//
LOCUS       KCLA01000736             368 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11902upu ultra-conserved element locus uce-7811,
            sequence.
ACCESSION   KCLA01000736
VERSION     KCLA01000736.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 368)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 368)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..368
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11902upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>368
                     /note="ultra-conserved element locus uce-7811"
BASE COUNT          102 a           72 c           75 g          119 t
ORIGIN      
        1 cacctgtcct tctgacagct ctgtcagtaa tgatatgcct tctacatggc ataatcccca
       61 tcctatggta aagaataatt tattaagaaa ttaaggggct tagctcctct ctgtcgggtt
      121 ggtcttcaaa agttggctga tagcagagac agcatgatta tcaatgaaaa attatttaac
      181 agtaccttgg ggctttttta gacaaagcct aataagtcac atgggtagat atcaatcaaa
      241 tttatccccc ttagatttag taaatattcc cccaagttca gtcaaattat gttgattatg
      301 tggctcctct cctcgcagtt cagtgtgact gtggggcaca gtcctagttt ggggagaagg
      361 gtattttt
//
LOCUS       KCLA01000737             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11918upu ultra-conserved element locus uce-7514,
            sequence.
ACCESSION   KCLA01000737
VERSION     KCLA01000737.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11918upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-7514"
BASE COUNT          269 a          161 c          154 g          308 t
ORIGIN      
        1 agtttgtagt ttgtttttat aaacttcata gacaccagat aaatttgatg tatttatagg
       61 gaaagcatat taatgtttgt ctactcactc cttgcactac tggctgcttc tgttgtattt
      121 tgtcagtttt tagtccccta atctctattt gcctactgtg ttttagaagg gaatcagatt
      181 ggttttatag cacattaatg ttttatacaa tattccatag agaacattaa ataaatataa
      241 aagaaaaagg ttgacctcta acacgtacac tcatttctta tgtcaaaccg ggagatgttg
      301 aaagccctat atggtcgtaa cccttctatc taactgtgac cctccttaac attaagcagg
      361 tgactcgatt aaacataaat caggcataaa atgccctgca cggggcggca cagtgaatca
      421 agcaaattat caaatggcaa aactcattct gtgctctggg caatgtaagc tgccagcact
      481 tatacatcaa aacttcactc aatgtaagat tgattttatt ttattttgtt tattttaatt
      541 ccctacagca agctgtgtta gtcgtgtaaa acgctgtctg catcattacg ttcctaagaa
      601 atgcttttct tgtttagcaa aggccgatca caatcttaag tgatgtaatc taagaccaga
      661 tacactgcac tctgtagtac tttctagtgg agctgatatt ttgtgcagta atgctgaatc
      721 ttaagcttct gtgattgtat agattttttt ctgtttgttt ttgtgtatac acacactatc
      781 aactttatca gaaatatgag caccaaaggg acgttataaa attgaatcac cagtagccat
      841 tgaagatatt ttccagaaag atgctgggat taaagcttgt aagtccaatc tt
//
LOCUS       KCLA01000738             223 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11932upu ultra-conserved element locus uce-4063,
            sequence.
ACCESSION   KCLA01000738
VERSION     KCLA01000738.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 223)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 223)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11932upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>223
                     /note="ultra-conserved element locus uce-4063"
BASE COUNT           72 a           44 c           35 g           72 t
ORIGIN      
        1 gtaaacattt ttctagacca aaatcaatgc cattgattgt cattaagcgg caagctaaaa
       61 acaaagaagt ggtttctaat tttcaggctc ctgctggagt cggctctatc tcttcctctt
      121 tccagttaag agcatcatta aatgcttaca gcaaacagca tattgagagg ccaagtgttt
      181 tattaattca tcatcagaat tatctcagca cattaatatt aat
//
LOCUS       KCLA01000739             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11947upu ultra-conserved element locus uce-3174,
            sequence.
ACCESSION   KCLA01000739
VERSION     KCLA01000739.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11947upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-3174"
BASE COUNT          237 a          214 c          201 g          270 t
ORIGIN      
        1 gccacttgaa gaatatcccc accttgtcaa ctaaatgtga tctaatagaa gaggaaagtg
       61 agatttttgg ccaatgtact ctgttcaccc atgaagtagg atttctgcca tgccatcagc
      121 ttttcatcgt tcccaggtgg atggctcatg agtggcagtg gctttctggc ttcacaaagg
      181 ctgtgtccag cctttgtctg ctcatcagat ttaaaacatc atttccccat ggaaagaaca
      241 ttgccagaaa cctcaagaaa agcatctaaa attgtgagtt ggctctcctc ttcttggtac
      301 acctggtgtg gacagcttcc tgttcatcct tcaggaatca tagcaggacc agctttgttg
      361 ccttggtttt gatgcttgcg tgctgccacc tagcccttct catggtccag cttacatgca
      421 cctacttctg ccctctgctt tccagcacat tgtgttttgg tgaacagatg aagtgcttac
      481 acattcatag actgagacgc cacaaattca gttgggttct cctgtagctc taagcagatt
      541 tctgccctct gagccatgac agccccgtct ggggctctga atgctgatgg caagaccttt
      601 tattattaat caggaattca tgtgattaat tttcagagga ggaaggggag ggtgttcatg
      661 atcagggttg aaatttcaca tcataaattc aatgaactga aactgtcatg tgccacacag
      721 tcactgcaac agtaccatta cttctgctga ctacgggtca cggaaggaga tatctagggc
      781 agtcccacag gacatgactg gaggcctttc attaatataa gcatttttgg gatcacacac
      841 ttgcagtagg tgtataacaa caccatgtta gcaatgttcc atttccacaa gcaagatgct
      901 ctttggtaat tagcagagtt ca
//
LOCUS       KCLA01000740             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11963upu ultra-conserved element locus uce-1358,
            sequence.
ACCESSION   KCLA01000740
VERSION     KCLA01000740.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11963upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-1358"
BASE COUNT          274 a          149 c          113 g          244 t
ORIGIN      
        1 attcagcaag tttaagtcca ttcttgcata ttgtttttaa tccttgtatc tgaactgaaa
       61 gtattgctgg ctgataaaac ttgctaaaat gcacaagtca ccgattacgc caatacaaca
      121 aagataacca catgtttgag gattgcaatg tgccagacat tcactgaaaa ccaaaaaaca
      181 cacaactaaa caaaactcac gcaacaaaca tctgagaatc tggacacttc acatcagtgt
      241 ttagaagtgt ttcattaata tcttaagaca agtgtatcaa aaccttggca tgtttaattt
      301 taatttgcca attttgtttt tctatcagaa agttatggct atactgccaa tgccgggtct
      361 gcttaatttg acttaagagt tcaatatgac ttaaacatta aaagctcaca ctaccccgaa
      421 atatataatt tcacgcatac ggtgacattc aacattcaag tgccagtgtt tttgtactgt
      481 cttttggtca agtttcttta aactttcaaa gaatcacttt taggcttaca aaaataaata
      541 tttgtcaaaa atgttcaata aatattacac aaaactagca gcaaaaagta tctagaaatc
      601 tgtcgtgtgc aaagttttct tcccagctat cattcccgtg gtcccaaata cgtttttgaa
      661 tctatttcct tcttatacaa gctgcgttca atctccaaga gacaaaataa gattggaagt
      721 taaggacacg cacacaagac atatataaaa ttctctgaat gtgcaataaa agaagtattt
//
LOCUS       KCLA01000741             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11977upu ultra-conserved element locus uce-7719,
            sequence.
ACCESSION   KCLA01000741
VERSION     KCLA01000741.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11977upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-7719"
BASE COUNT          125 a           64 c           90 g          182 t
ORIGIN      
        1 tccaaaagta tttgttttaa atgcattcct tcagatatat ttttttaaag atgtgttgtg
       61 tgttttcttt gttttctttt tctaggctga ggttcagcta tgctatctgg aagcacaaag
      121 agatgctgtt gaacagatgt ccttaaagct gtacagcgag cagtacaaca ctagtagcaa
      181 gcgaaaggaa gagtttgctg atatgtcaaa agttcacaca gtgggaagta atgggtaggg
      241 aactattctt tttgttgttt tattctcact gatgtgtatt tttttttaca tgatatattt
      301 ttcttacttc tagttaacca gttttttttt tcctaggcca aggggtaggg gaaagtcgtg
      361 actttttttt tttcctatat gaatgcaaca aataatgagt tttggaaagt ttattcaaat
      421 catgtttgtt ctttggacta tctaacatta tctcacagaa a
//
LOCUS       KCLA01000742             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 11992upu ultra-conserved element locus uce-3501,
            sequence.
ACCESSION   KCLA01000742
VERSION     KCLA01000742.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="11992upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-3501"
BASE COUNT          173 a          128 c          150 g          138 t
ORIGIN      
        1 gattgcaaaa gtgctttaaa ggcaggcgtt ctccaagtta gtcagctgtc aaagtgattc
       61 agagggttga caatcacatc gaagacaaat atagacatcg gagagagctg cttacaagca
      121 actctgcttc agtccagaaa tgcatccagt tcaagggtta aacgaaagca aaagcaatcg
      181 cttcaaccgt gtttgtgaag aaaataaaac agcttgatgg gagttaaatg aaggggctct
      241 gtgacttaaa aggaatggac agagagagaa aaaggtcaga agattaaatt ttccctaagg
      301 gaaaagtcat tctttggagt cattaacctc cttctaggtc actcctgaaa aacacagcag
      361 gaaatcctac tgctcctaga gagatgggtg caccgagtgc cgcccgctga cctggcagct
      421 ccggcactgt gcttacaagt tctcctgcgg gcaggcctgg ctttactgcg cccatcctga
      481 agcaaggcca tcttttagct gttctaggaa gtgtgtccac accgacgaga ttccaggggc
      541 tcggggtgtt aaaaagaagc atcgctcgct tccgtgtgtt ttaatggag
//
LOCUS       KCLA01000743             914 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12007upu ultra-conserved element locus uce-274,
            sequence.
ACCESSION   KCLA01000743
VERSION     KCLA01000743.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12007upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>914
                     /note="ultra-conserved element locus uce-274"
BASE COUNT          253 a          172 c          214 g          275 t
ORIGIN      
        1 ctctggagac ctcacagagg tgagtgtatc gagttgcaaa gtagatggaa atgctaaaat
       61 ccacaattga ccatttagac ttgtctctgc agtttcagtc tttacaggat caattttcca
      121 ttaagaaaag tagagaaggt taaacaattt ataaaagtct agtgggacgt ttgctcttcg
      181 gatagccgag tgctttctga tcctctccct gcctttcact ttctttaagt tgtgtcggac
      241 agggccaggg tttattgttt taggcttttc tgaacatgca cccgtattta cactggattg
      301 aaagcatttg cttccaatga aaatcttgtc ttagattaca gcccagcagt gtaatttccc
      361 tcccagatgg gagtaaagta gcagtatttg cctaaaaaca gtaggaagaa caaactgtgc
      421 attaagccaa ggctgttttt ggcttgagct aatgatgtaa cagaaacctt ttatttggga
      481 taggtcaccg ccggggatag aaggaggtga tctggctcgt gcttgaaagg ttttgccatt
      541 gtatctacat aagtcttcac ttaaaaaatc ctgttcctaa tgcttctgct ttcatagggc
      601 agaaataaac aggaaaggtt ctggcgagtg ttataggtgg aatgcagaaa gcttttcctc
      661 ccctaatgga ggatataatt caggtgccct ggaggcatgc tttcaggaat tctcttgccc
      721 gaggtaatgg gaagctgaag ctgcttgaag gccttgatta tctattgatg cacaaagctg
      781 gaaaaaaagt catctccctt ggattatagt agatatttcc ataaattatc aatgagtcct
      841 cctcccgcca ggcacgaggc actgcctgct aaattaatct gaagggggtt tgaaatgagg
      901 agagagtgtg tttt
//
LOCUS       KCLA01000744             398 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12023upu ultra-conserved element locus uce-3378,
            sequence.
ACCESSION   KCLA01000744
VERSION     KCLA01000744.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 398)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..398
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12023upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>398
                     /note="ultra-conserved element locus uce-3378"
BASE COUNT          140 a           66 c           64 g          128 t
ORIGIN      
        1 aatatcgcat tttaaaactt tatggaacta atttatagtg ttgtgcaggc gcagacttga
       61 tctcctggca gcaaaatttt atgtttccat ttcagcaata ctgcctaaca caataatacc
      121 aagctagcaa atcttaaata taagttaagc taacatgatc cattgcctta taaagcaaga
      181 gtaccctgtg gagtcatgct gaatatgcca aatgattttt caaaatttaa tcatcctaaa
      241 tgtcagataa aggtgctttt gctgtcattc tttaaaacaa ggaaaaaaaa ccctagtgtg
      301 ccttcaagtt acacagaaaa ctgtttgaaa tagctatgtt aaaatatcaa tctgatgttt
      361 tctagacata gggaaggaaa tattagtgtt ttattgca
//
LOCUS       KCLA01000745            1082 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12039upu ultra-conserved element locus uce-663,
            sequence.
ACCESSION   KCLA01000745
VERSION     KCLA01000745.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12039upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1082
                     /note="ultra-conserved element locus uce-663"
BASE COUNT          297 a          223 c          222 g          340 t
ORIGIN      
        1 gcaatttgaa tcgcggtaaa cacgcagctg atgcaaacat atagaggttc ttttattccc
       61 aaatcccaaa gggaaggaga actaaacctt ccccttcttc ttgcatatct tagcatctca
      121 acttactgaa acatttaaag gtcttcctac tttcttcaca caaactctac ctcagttccc
      181 ttaggtaata aaaccaaact catccgagca aacaggatag tcacgtcttc ggccgcagtt
      241 aacattttac ccgttaatga ccagttgtct tctataaagg aattccattt ttttttgatt
      301 ggcgttagac tcacagacag acagaaataa gctgccattc ttccatttga tagccagacg
      361 ctgccagttg ttgctagggc agtcatgctg ttaaattagg tctaatgaac gagtaattgc
      421 tttaggtata gtgaaccatt tcaaagaaaa caaggattct aattgatttg caatttgttt
      481 ggcacattgc attgtctggg gctattgatt agtcttctgg atttcacact gcatgtgttt
      541 ccctttatta agggaataac aggttactga ttactttcct tctgggttta atgtagcggt
      601 taatgtctac tttgttcttg tgtcatgtca caggcaagga aggaataata tgcaagtggg
      661 tggccctttg ctaagaaact cccctgctgc tttgagctgt gtactctaag acatgctgaa
      721 aagcagatca agagaaaggg ttagaatagc aggactcaca agttatggcc tgagtcaggc
      781 tagacccagg ctagaaactt ggctttcctt cgctgtcaaa gctcagcgca gtgtgaagcg
      841 attggtggta gatctgttct tgtttgatta aacgtctcta tataaggaaa catactgtag
      901 tcttgtgctc ctcggtttag atacagcagc atcctaaata aggaagccta caattttatc
      961 ctttgctgcg cgagatttac tccgctatag atattctgga actgcacatt ttaaatctat
     1021 cttggtgtgc gatggaggga gttcattcag ctaacagctt tgttcctttc ataggacaac
     1081 ct
//
LOCUS       KCLA01000746             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12054upu ultra-conserved element locus uce-1547,
            sequence.
ACCESSION   KCLA01000746
VERSION     KCLA01000746.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12054upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-1547"
BASE COUNT          234 a          161 c          120 g          266 t
ORIGIN      
        1 ccccccccca atatttaaat tgccttacaa agcttctcta aatatttgct atgtatttag
       61 catgcctaag atttgccagt tatcccaaag tctttttgct gtaaattgca attttacaac
      121 ttcatgctcg tgatatattt tgacaaagct ctgctgacac tctctattgg cctccaaaga
      181 caaaatagct gatactccat gagccaccag agaactctca atttgttgtg agacgggctg
      241 ctactttgcc atcctcaatc tgcatggaga aagattaaac attcaatttg ttacttgata
      301 ggccacaagg ttcaccactt accatacaaa tggaaaacat tactgtcatt cctcaacttg
      361 cttgcctgag tattttatta tttgtaatat ttacttcagg gaaattatga ttcatgtcat
      421 atttatcttc atgaaaaatg agcatctaaa tggaaatcac cttttgaatg taccgggata
      481 tagtgtaata ctaatatgct tcatgaacta taaaatttag tcacagtgta tggatatatt
      541 atagcatgac tttaatactc tcacatcaag caaattttct ctgtgttaag ctgatactct
      601 gagacctgat ttcagtttga taatcattac acttacatga tggtacaagt cactgcttgt
      661 agatttatgt cccccctcag ctcttttgca ttaatctgcc tctgaataag ctatttgcac
      721 ttcctcagtg catgcaggaa attgaaataa ggtgcaaatt tgtcggcctt aaatctgaac
      781 a
//
LOCUS       KCLA01000747             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12069upu ultra-conserved element locus uce-2005,
            sequence.
ACCESSION   KCLA01000747
VERSION     KCLA01000747.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12069upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-2005"
BASE COUNT          277 a          151 c          166 g          241 t
ORIGIN      
        1 gaggactcag ggccccaata agaagaatgt tttagttctt ctgcagaata cagacttcaa
       61 aaatgggtaa gattttcaga cacgtgagaa aatacggaaa ggaggagaca aaacaagcag
      121 caaatatgtg tacgtctgca ttaggacaga gaaatggctt ccatgctccc cagctctgct
      181 ttgttctgct cacctgagaa gctggaggag atttgcccag atattaaatg acctttaaaa
      241 ctagcaccag tcaattgtca cctccttttg ccaagtacca ggtgacaacc gtgagagctg
      301 ttacctatca aaaaaggagc aagaggtaac aataaaaata aagcagggat ataacaaatc
      361 gggttttaaa aacaaagcct tttctctttt ttccttactc tgtctccaag tacacctttc
      421 cagctcatta ctgcaaatca tttgaattcc agcacacaat gtcacctgca ctgtaatctg
      481 attactttat ggaggaatta gtatgtatat ttaatgtaga agggttttaa tcttgatgaa
      541 aataatccta aggaactgtg atagggctgc tcatatgtct ggcagatatg ccagtaacat
      601 gctaataaat gacagctgat ttatgtatct ggattctttt atttataaaa atagcaagtg
      661 gactgatttt tgatattaat aatacaagtg aatccacttt gattagactt ctgtagagag
      721 ctgtgcatat tcggcattac aattaaatct tatgatgtgg aatgggaatg acatgctaat
      781 gaagcaagcc agtgagcctg aaccaagaat gtccaacatc attatgggat atctt
//
LOCUS       KCLA01000748            1129 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12085upu ultra-conserved element locus uce-4819,
            sequence.
ACCESSION   KCLA01000748
VERSION     KCLA01000748.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12085upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1129
                     /note="ultra-conserved element locus uce-4819"
BASE COUNT          319 a          252 c          243 g          315 t
ORIGIN      
        1 tgttatttga aaggaactgt ccaagaaagc ccagctgtgt gacaaagcag aagccagctc
       61 taaagcaaac actaaaagct ggaaatgtcc ctgctcctct gaacaaggtg ctgaggcagg
      121 tgaagtcctg gagctcgggg tgggagcttt ccaggttgct cagaaggtca ctgaaaatga
      181 agtcacacca gttatctcac ctgctcttac tagtggttgt gggacatttt agagtgtgac
      241 cttttgaaac gtacatgaaa tactatagat catctcctct cctgaggaca tcggtagcac
      301 gaatccaaag gcggcctcat ggttggcaga gactgtgtgg ggctttgtgt gtacatgtat
      361 ttgtatacag acactgactt gtttgctgct tcttccaaat tactgccctc tgcgtcttcc
      421 ccgttttaca tgcactgcag ttaaaccact ttttccaata aatatggaaa cttgatgact
      481 tgaaaaatcc ttccatgtca gttctgcagt tcatattcat gctgagattg tatctaattt
      541 tgaaaatctt cacacttgtg ccctgccatc atgtgtaatc ttttatgcat ggctacctcc
      601 actgctgctg aagcagttgc tatgcgacag atgaacctgc tccgtggggc cctgacatta
      661 gtaaaagcaa attgaccaca ggagcactaa tctagcatga aaagcagttg gtgccgtgca
      721 tttcctagag aaggattacc taatcaacaa gcaaaacctc cttttaaacg tgagctgaat
      781 tacctgggtc tggatttccc tgtttcacac ctttttgcta taccgaatca tcctgaagag
      841 tgaagactgt gaggatgcat tactcaggga cccacctcac atcagattct tcagctttta
      901 ccctggcttg cttgtaaatt tgtcatgtgg gctgatagtt gctgtagctt gtttcttcaa
      961 ggttaccaac cactggtaat gaagacaaat aaagacaaaa gatggccaga caacagcaaa
     1021 tgtcaccgtt atcacctcac cgagaagccg tatgaactca aaatgtcaaa aaagggttaa
     1081 atgtgaaaat ggtcacctaa tccacatgga aactggagta taaagactt
//
LOCUS       KCLA01000749             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12100upu ultra-conserved element locus uce-6753,
            sequence.
ACCESSION   KCLA01000749
VERSION     KCLA01000749.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12100upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-6753"
BASE COUNT          149 a           96 c          108 g          146 t
ORIGIN      
        1 atccatatag gttggttaca ccaatctgtg ctttgcttgt ctttaatact gtttactatt
       61 gatgctgaat catccctaac gtaggtgtaa acagttaagt cacaggtgtt tttcaggttc
      121 taccacactg agatgctgag gactcctcca attcagtttc tgattgttta caatcgcctg
      181 ctgtgcctgc aatatgctgg aattgtactt aaaacacata aatctgcctt caaaggcagc
      241 ttgggaggca gaagtgtggc tagggaagtt taaatggaag ggacaagcaa tggctacaaa
      301 gagctcagtt tttagtagta ggtgttgcag tttgttccaa ttactgcaca caccacagtg
      361 tgaaatgttc atgccaatct agtaaaaaga aaaagtacac gcaatgctga aattaacacc
      421 tttgtaatta cagacacgtt cctttactac tacccagcaa gtgcagctga ggtaggtttg
      481 aagcaatgaa agcagaatg
//
LOCUS       KCLA01000750            1426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12115upu ultra-conserved element locus uce-564,
            sequence.
ACCESSION   KCLA01000750
VERSION     KCLA01000750.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1426
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12115upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1426
                     /note="ultra-conserved element locus uce-564"
BASE COUNT          409 a          316 c          226 g          475 t
ORIGIN      
        1 atacacataa agacttctct ggtttacctt ttttttgtaa tttttcctta aaatcttttt
       61 taacctatgt ttagagagga caatatttca aacctactga ttttatttta aaagagatca
      121 ttaagacaat taattttagt tcaaaagcca agttcttcca atgcttacag ggataaagct
      181 gcttccacaa caaaaccatt tctgcctctc atagcagcaa taggccagta tggttacaca
      241 agatggaact gaagggaagg tcacagggct atgaggtaca tttaaaaatg ccagaaatag
      301 atgctgatca tcttgtattt ctttttcaaa aaagcctcca atcagttcta aatttctcag
      361 acagtttgct ttcctgctgc acctagaaat gtgtcatttg tctatttaaa aacataacag
      421 ctcaccaccc ctcctcactg gctttcgttg gcctctcttt ttttcccctt taatgtctct
      481 aactttatgc catgttcttt tcctctttca gcacggctga gcaaggctga caggcggatt
      541 cctttgcttt tcagggtatt aaagccactt tcccgctctg acagcctgtt ctactctgcc
      601 accttatagc tctggcttca cacttctctg ggcagccact gcttcttgac agaccactgt
      661 cacttcccat catcctctct gtatatcctg ttctctcccc ctcagcacgc atcccgactt
      721 tccaaccaat gcaattattt tttttgacaa gccatccatc agctttaact ttaaaagcac
      781 tttctgctga tatccattgt taaatccctt gctttttatg gagcttgcat gagagaatat
      841 gatatcagac attcaaacta ccaaaccatg taaatttact ttgttctcag ctatgtttcc
      901 aatttcacgt ccaatttttc ggtacattat gcgtagttgt tgtgcttaat atgatgttgt
      961 caaatcccat taaagttcac tgcattgcac ggctttaaaa acaggttaca atttgcattc
     1021 tataaagaaa ggaaggagtg cagactgaag tcaagctgaa tcttattaaa attatctgtt
     1081 caattgttac atttgtagat ggagtaattt tgaggcatta gctgagacac atatgaaaat
     1141 gtcagtgtgc caactaatga caatgaaagc aaaaggaatg tatctgtgaa actcaataaa
     1201 gctcctgtgc tggtgacata aatttgatga taatccgagg aaatgaataa gggaccatcc
     1261 agtttgaata ggaattacct tttctattaa atcactttgc tgtatttcca cttggcctac
     1321 atcttggtcc tatgccacaa tgagtctctc ttgctggact aaaaaaaccc ctacatgagt
     1381 aacattctct taaggaatac ctttcatgta agcctcacaa caaatt
//
LOCUS       KCLA01000751             883 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12130upu ultra-conserved element locus uce-3073,
            sequence.
ACCESSION   KCLA01000751
VERSION     KCLA01000751.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12130upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>883
                     /note="ultra-conserved element locus uce-3073"
BASE COUNT          283 a          183 c          161 g          256 t
ORIGIN      
        1 gacaacttgc acaccaactt cctataaaag aagttaaaaa aactgttttc aaacaaatcc
       61 ttccattgtt tcaaccttcc tccttcaggt aaacacattc cacctagaaa cacatcccag
      121 aactttgcta tgaacagcca ctcggtttct gtatgagcag aaacaaaatg ttccattcaa
      181 aacagaatct catttatttt tataaatata gagagatttg actgcaaatt gaattaacca
      241 tttggatgtt ttggatggcc tgaaaataat ctttttgaaa atttttgtga ttgatttgga
      301 actatgacta gctggaaaga gcaaagaggg aagtgacact acaggtttaa tggggtgatc
      361 tatctagtgt gggttaatta ttttcttttt gcctgttttg gttagatgaa cattctctta
      421 ccatttgtct ggtttgtccg tggttaggca gacctaacaa acaggaaaga gaatagagct
      481 ggtaagacca ttgctttgcc aagacaaaaa aagtacaaat caaaacacac gcagctacga
      541 gtgcaaccgt gttgtctacc aaactcactc ctcctagaca ggtaactgag gaaagagctt
      601 cctgaacaac ctggttgaag ggcagaggcc ccaagttccg ttcacttggt cttttctcca
      661 tttactcaca actttcttca aactaccact aatagaatat ctcttctttc agatccaagg
      721 ttttcctcaa gttttgggga aaatctggct ttggaagaat ttactgacat caagaaggag
      781 aaagtggaag ctattagaca ccagcaagag agcaaatcca atctttccta tcatccctgg
      841 atccccataa ctgagatgtc agctacaatc agttagccaa cag
//
LOCUS       KCLA01000752            1071 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12145upu ultra-conserved element locus uce-6113,
            sequence.
ACCESSION   KCLA01000752
VERSION     KCLA01000752.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12145upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1071
                     /note="ultra-conserved element locus uce-6113"
BASE COUNT          357 a          216 c          192 g          306 t
ORIGIN      
        1 tttgaactca gcattagaga ccagtagttg atagctctcc aaattaagtt atctgaatgt
       61 agccagtggg agataccatt caaataaaaa ccttgatatg aaatcagaag ctctgaaaaa
      121 aatcaacagt gtttacttag agaaagtgga ggatcataca tttttagagc ccagatggaa
      181 aacaccaact tgaatatgtt ttgaaacaca aattctacac taccccttct aaaagaagct
      241 gtttgtaaaa gcatggttta cgttaatcag tacctaacaa ttttatatac aacctttcta
      301 aaattcattt gcataatgat aatctgcata tggcagggtt taagttattt aagcagtgtt
      361 atatttcact atttattctt gcttcgccac tgctttagca gtgaatcctt atggagtgta
      421 atgcagctaa tgaggtagct ttttaactga acaaactgac aggtcccata tctgcagagg
      481 cagcttgaaa ccgtgcccaa cctctcggct tcccaagagg cttttcaaaa ttcaataaat
      541 aacatctgta ggcgatgttg ggtgcagacc tagcagagtg cgtcataaca ctgagctggc
      601 agaacaaaga aaccatgacg actgccaagt ttccatggca actgctgcga ggcttggaga
      661 gtataatagc acatcaatca ttgtccaaaa gaacttcatt atcagcaagc ctttaggatc
      721 tgtttagtgt gcaattgtgg gttaactcac ctcaaagcct tgctctctag caaaagtggc
      781 agcttcctga aataataaaa aaagaacagt taattataaa gtgctagata atgaagaaat
      841 aacacatttt gaaagtcatt cagccagctt tccttttata tgattatctc aatataccca
      901 catacagttg ttcaattctg atagtcgcac caaaagcttc cccctccttc cctcaagccc
      961 aacaacagta caatgtcaac acattttaca acttcaaata aaggacgtac aatatgtttt
     1021 ttccaggcga ggaaagttac tagtggcgaa aggacttcga cttggaatct a
//
LOCUS       KCLA01000753            1137 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12160upu ultra-conserved element locus uce-129,
            sequence.
ACCESSION   KCLA01000753
VERSION     KCLA01000753.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1137)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1137)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1137
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12160upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1137
                     /note="ultra-conserved element locus uce-129"
BASE COUNT          366 a          192 c          203 g          376 t
ORIGIN      
        1 aaagaaaagt aaaataaatt tatgcaggag acttgcagtt taggaatgcc ttcagtttcc
       61 cttgttctgt ggaatatctg taattatcac tcagcaatct ctatttatgc aagtactaga
      121 aatactgggt tttcattgtg aaaaggcttt atgaacacat aagaaagctc tgtgtgccac
      181 agttggcaaa gagaaaattc agaacactca ctaattaacc ataaagaaat agtttttttt
      241 taaataacaa gtctcctaag aaattacatt ttaaatgagt gctgattaat atcagaaaca
      301 agttaaagga gttaagaaag ttttaagcat tatccttttc agcatggcta tcaataggaa
      361 gctgacaata gtagtattgc tatttacatc ttggtaacac gctggtgtga atttgcataa
      421 cgtattgtgg ttctgtgctc tagggagttg cattgtaaca tattggtgct taatgaactc
      481 tgaaaaaatt gattttccac agagtaaatt aaggaatgca ttatagctgt taaagcaatc
      541 ttaagggaaa tctgaggctt ccactgcagc accatgctta gtaagtaata aattacatgt
      601 tatacttatt tgccttaatt catgctaatt ttgtccaatt aatgtatcac agtaattcag
      661 aagcctgtca caggagagct aattatttat tggatttttg tgttcagctc cctaggagtc
      721 tactagcaaa caaacttgcg actgtctttc tgttaggtcc acaatgacat ttttatgtct
      781 tattgtggaa aggaaaagaa tgttatcact tcctggtttc aattataaaa atggatcatt
      841 attcacgtaa gctagttttt tgtttacaaa ctggtgtctc gtcgtgacag actgccatac
      901 cactaggatg agatccaatg ctgttcctca tcttacagat gtctgaacat gacacaattc
      961 atattaaaga tcatggcagt actttccaca acccgaaagc ttctgccaag tgtgtgtaaa
     1021 gttcaaggaa aaagttactc ttttccctga aaccgatggt tttcaaaatc cattgcccgt
     1081 agcaattgat gctctttcac aaaaatagat ttttatctct ggcagaatgt taattca
//
LOCUS       KCLA01000754             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12175upu ultra-conserved element locus uce-3792,
            sequence.
ACCESSION   KCLA01000754
VERSION     KCLA01000754.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12175upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-3792"
BASE COUNT          234 a          149 c          153 g          231 t
ORIGIN      
        1 cccccccctt ttcttctctg tatctcttgt caaataaagg ccaagaaaca ccaggtcttt
       61 ctaacagaga cgtatgaaaa caacgtgaga gagctggagt tactcttgga cagctttgct
      121 atgtcaggcc agcggacagc aggttagttg aaggtataaa atgacagatg catctgtcaa
      181 tgttccaaag tcactacatt gtgggaattc tgcagatgcc tcttgcattc cctcttctca
      241 acatgctttg atttgatgac atgataagag cagttctcac agcagttaaa tggccttgct
      301 agctgagaaa gggtgatgga atgtggacct gctgttgtca gcccagagct tgatttacaa
      361 atgctggggt gtatatgatc ggtcagaaaa gggctcactt gctgtgctct aaatccaact
      421 gagaaaaaag tccttacagt atacctgcaa agggaacaga tgttttgcct gaactgagcc
      481 aaattctgag gcaaccttca gcaacttaaa ggtcatatat tcaaaaaggt tgtgtaggac
      541 acatgatata acacaatact ttttaccttt gattgtggac tagtactata ttgcattact
      601 ttgatctaat acaaaagaaa tatttctctg ttttcattaa agataattgt aaatcagtgg
      661 ttatcattct gctatgtagc tttatatgta attttggtaa caaactcaac aaactgctgt
      721 ctgcttaagc acttgaagta atgactaata aaccatctga acttcaa
//
LOCUS       KCLA01000755             951 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12191upu ultra-conserved element locus uce-4550,
            sequence.
ACCESSION   KCLA01000755
VERSION     KCLA01000755.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12191upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>951
                     /note="ultra-conserved element locus uce-4550"
BASE COUNT          306 a          183 c          169 g          293 t
ORIGIN      
        1 taatgagcat cagtgggctg tgagtttaac tccacttgtg agaaacacct ccataaatca
       61 tctgtgtcta tggcagtctt gaattatgag atctgtagtt cactcgtggg ataaatggca
      121 tacttctcag ataaccatta tctatctggc aacagctgta tcactcactg cattgggtaa
      181 cagcaaaaga ctgtgctttc ctatcgcttt agccgagtgt gctctttaaa catttattgt
      241 acaatggtta ttgcagggga taaataatgc atacgaagga acaaaattta cattataagt
      301 tgattaaact gcttaacagt ttttagccac tctttaaata aagattttta atcagattta
      361 atctatgcag tgtttcatgt ccaaagaact agcatttaat ctctgtttaa ctgaaattta
      421 gttagcaatg ttgacacctc tgcattttaa cactgggatt tctttgtggg acacaatccc
      481 tttcactcaa cttaatatcc cttcttggtc tctaagggaa aataattgag tttaggctag
      541 ttttaaatag cgataaggac agggaacaca gatgggtatt tcattgatta acactaacac
      601 tggcctaagg cctcggtgtc aggcattaga ttaggacatt acgaagagaa tgacagagtt
      661 ttggcacttt attcctcctc aataacattc tttcacatat taagtttatc ccaccctagg
      721 tagctacttt atcatgcaga aggccttaat ccactgatgt gactctatct gctttcactt
      781 tgatgctgcc tctgtttaca agagtaatgc agcctgtgta agacaaagta ctcgtgacaa
      841 gaacaactga ataaggcttt tagatgcaca gagctctgac ctaaaaaaaa aaaaagacct
      901 tcaataaact tcaaaatact ccaaaccaaa agagaaggga aaaaatcaac a
//
LOCUS       KCLA01000756             941 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12207upu ultra-conserved element locus uce-7958,
            sequence.
ACCESSION   KCLA01000756
VERSION     KCLA01000756.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12207upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>941
                     /note="ultra-conserved element locus uce-7958"
BASE COUNT          304 a          180 c          163 g          294 t
ORIGIN      
        1 gtaaaacttc atgttttggt attatttgga ttgtaaaaat cctttgcaga attcaaatca
       61 tcattttctc tgtttctatt aaaatatacg cttaaaatag attgcccatt gaatcacagc
      121 agtgttattc ttcaatgcta atttttaaca ataaaagaaa cgctaccctc ccacacacaa
      181 atagccataa ttatgtaaag aacaactgct tcagactgat gactttcaat atgctcgagt
      241 ctagcatact ggtataagag gccagaaagg tcaacagtaa ttcataactg ctataaaatt
      301 gtgtagcatc ctagggcttc tggaggatgc tgacattatc atgcttcttc tgctggtttg
      361 tatatgtaaa ttcgtgatag gaagtgcact gctttgctgt atcgcatgca gagcatcaat
      421 caggcagtag aatacatcag agtattttca ttatgcctag ttatttactg catcagaaga
      481 aattaccctg gcaagccaag cggccttctc tggatagcat gatatgacca accaggtttc
      541 agctcaggag tcttgtaaac attacaggat taatctcaca atcacaatca tcaatctttc
      601 ctagtcctgc ctgggtgcaa ctgcggagat tggtaaccag gcaatgcaga tttaaattta
      661 accctgaaca tcaagagctg tatgtcagat atgtgaatca tattacaaac acctatattt
      721 ttaccccagc tttagtacaa aatgatgaaa acataacatt ttttcgcttc aaattcatgt
      781 ctaatttttc attcctattt ttgatgcatt acagcaaaat gagaaatatt ctgaaagaga
      841 tacctttcgc aatagcagac tgtaacacta aaccaatgtg ctgtgatgcc taggtgtaat
      901 gtatgtatta gaggcaactg acattgcagt aaaatctgaa g
//
LOCUS       KCLA01000757            1091 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12222upu ultra-conserved element locus uce-1354,
            sequence.
ACCESSION   KCLA01000757
VERSION     KCLA01000757.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12222upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1091
                     /note="ultra-conserved element locus uce-1354"
BASE COUNT          286 a          210 c          254 g          341 t
ORIGIN      
        1 accaagttaa ttggggtatg gctctgttct ttgctttatg tgtgaccttt tactatctct
       61 atggccctgt agttcatgca gtgtcataaa gctgtgggaa agtcttgcag ctagtgttat
      121 cagctgttgg aaattaactt aaaaatgaaa tatctgtgtt tccttttgcc tgaaggtgtc
      181 tgggagtctg taaactatta caaggtgcat tttttgtggt tgtgatttca ctgtagttga
      241 gcatttcttg tgcatctttt tcccttcttt tacccccctc ccctcccgcc tgctttttag
      301 tgcaagctgt gggttggcaa tcaggtggta ctgggggagg gggttacttt aggagggggt
      361 tacatggcat aattcccacg aatttaggag gaggatgaaa aagataaaga aattttgttt
      421 ttttgagcta gaggattctc tgcatgactt cgccactgat gggatcatgt gctttcaggc
      481 tgagatttta ttaacaattc aaatggaaat tgagggcaca ggaggagcag attctcacat
      541 aaacttgatc tgtccatgaa tgcagttctc tgtttgccct gaccctgcat ggcttaagac
      601 actgcctgtg aggcctgagt gccagacaca aagaccgaaa tgaaaagcaa gcacattcca
      661 ctagtctgca caaaggcaat ggagcagttt ctagctctct ccccagggag agatcttatc
      721 tccttgtggc taaaaccctt tagagagttt gtttgtactc tagcacccaa ggtttatgaa
      781 ttgatatgga tgctgattaa acactgcaag ttttctcagt aaatcttttc gggaggcatg
      841 gaggtgttcc acatgtattt tctttctcga atatatacag ataaaaggtt gctccagttt
      901 cctgaggagc aaacgtagac aagtgccaag gaagaagaca ctacagaaaa tatataagtt
      961 aacaaaagtc atcgctaccc ttagaagaat tttgcaaaac tttggcttta ggacacattg
     1021 cctgtttgta gcatttaaaa tagcacagac tgtcactgat gccagacgct tgtgcttgcc
     1081 agtgcttggg a
//
LOCUS       KCLA01000758             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12238upu ultra-conserved element locus uce-5739,
            sequence.
ACCESSION   KCLA01000758
VERSION     KCLA01000758.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12238upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-5739"
BASE COUNT          193 a          105 c          126 g          178 t
ORIGIN      
        1 aaatggaaac ataccttaca tgcactacag tgtcttggtg taggaaaaaa acagatggag
       61 ctttctctag ttaaacttca acttgaaaga cacatggctg gtggagctga agcttggttg
      121 gtgatgcact tcatgtcctt catgtaaaat attctgtcac ttttaatttt gtaccttatt
      181 tactttctct gttacaaaag aactgggact tgtttttagc agctctgatt aagtttctat
      241 tgattttcaa gataggaaat ggaactttca gattccccac atgaatttaa agcaagtcag
      301 ttattaacct caaggtaaaa catctgccat gacattcaaa gaatagacag gtactgtctt
      361 actgaaaaca gcatctgtgc ttgaacctca gtgcttggga tttggatttt gagaaaaatg
      421 caggaagcag gactgtgttt ggagatgtgc aaaaccacac aaatacagcc ggtttatcct
      481 aatctgaagc actatcactc catttagata gacacactta actattacag catggatggg
      541 taaagcaagt tagagatggt gtcaggggaa ttaagaagac tgtgaaagcc aatgcagagc
      601 tg
//
LOCUS       KCLA01000759             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12254upu ultra-conserved element locus uce-2795,
            sequence.
ACCESSION   KCLA01000759
VERSION     KCLA01000759.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12254upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-2795"
BASE COUNT          292 a          182 c          160 g          266 t
ORIGIN      
        1 agaccttgaa gtctccagac aagtgttcat tcaatgaaaa tccttcagat tgtgcaatta
       61 atatcaatga attttctagc agtcttttta ttttaaaatg ggtagcacta aacagagatg
      121 acttcctttc ttagcacaga cttgataacg aagccactga atttgcttat aatatgtttg
      181 ttcagaaagt catttgcagt agaaattcaa agcaaggagc tcgtttagat gaaaaaagaa
      241 atagcagcaa aaacaacaca aagcggggga aaatgtagaa tcacaaagaa aacctaaaca
      301 aataaagtgc aaacagagag tgacaagcgc actcagcccc tggattggtt atggatgaga
      361 cgacaagtat atgatgaaat taatgaccct ctgtcaactt tttagatctc acttttaaag
      421 agaatggacc aaaaatcaat agcccccaaa ccactagtac tccagtgaac cagtttatca
      481 tttatcttac tgctggcact catatagaaa gtgcagccaa gcacagcaca ggactttcat
      541 tggtagtcat cattactttg agcactccag ttaaaggtca aaggtgtgca gtacagctcc
      601 tctgagaagt acctatttga aattaccaat atctgtgtat ggcttatcca tgctgtacac
      661 tacttttccc ccccgtatgc atttcccctt tctgagcttt acctgatggc tgaggctgaa
      721 gcagtggtgg ctctgcaccc tggctgaaga ctgaactgat gtttccatta tccattctca
      781 ttcttcaaat gtcagatttt gtttttttct agagacattg agctgaaata acagacataa
      841 gataacacct ctattttttt ctttgttttc cgccctgaaa aaatttagaa tcatatttaa
//
LOCUS       KCLA01000760             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12270upu ultra-conserved element locus uce-2781,
            sequence.
ACCESSION   KCLA01000760
VERSION     KCLA01000760.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12270upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-2781"
BASE COUNT          260 a          204 c          213 g          261 t
ORIGIN      
        1 aaaaacgtgc accctttgga gcagcttcat cttttctgta tatacttgaa aaagttgtct
       61 tatatattag ttacaagaca gagaactttg acttctgaga atcaaagtac ctgtgacggg
      121 tgcagcagtg ctgtgcagca gcagccttat gagaataccg catcctttcg gagacgcacg
      181 agggcttaga ggtctcattt agctacctgt gtgcccctgc agaagccctg ctagcaataa
      241 agtaccttgt ggcaaacagc tatttcatta attaaccaca ggatttgctg gaaaggaaag
      301 cactaaacaa tgctgcacag aaagtgcaac ggtggttgtt gcaggtccct gtctgcagta
      361 tgtgcggcag agacaagcaa tgtctatgct gtttctaatt attccaatta tcatggcaca
      421 ctatgaaaac ttgattaata acactgaaga tattgttgtg gcaattagcc atatggttgt
      481 gggactttat tctgtcacga tttagccatt agcatctact tatgtttgtc agaacagagc
      541 atccgtgaca agttggagtt ccgctcacct tgccgagtcc ctggtgagca acaccagaga
      601 aatgtttatt cctgggagcc ccacgcctga gtaaattttt catgtggcat ccggtctgac
      661 gggggacaaa tgtcaagtag cttacgcgac gacccatcaa gctggtctct ctctgcaaag
      721 ggtaccctgc ttatcaaggc agacttagtt caggggagga tttgaccagt aaattagtgt
      781 caaatgtctt gtattcagtg ttttccacag tgaagcatcc agacagcatg cacctaccct
      841 gatgtagaca cgatgaaatg ccctattatg attttataca cctatgactt acacagtacc
      901 gtgtgtttga aatgtatatc tgcaagcaga gggaccac
//
LOCUS       KCLA01000761            1114 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12284upu ultra-conserved element locus uce-1573,
            sequence.
ACCESSION   KCLA01000761
VERSION     KCLA01000761.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12284upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1114
                     /note="ultra-conserved element locus uce-1573"
BASE COUNT          368 a          190 c          191 g          365 t
ORIGIN      
        1 ttttgagtag cattaaaatc agtcttccct gattttctgt gtcccccttc ttttcaaagc
       61 acacacatta aactcatttt atgcttataa tgtatataat gattctagac aacataagaa
      121 ggacattggg attcttccta tttcagcata taaagtgcta agccaattta tgcaggttaa
      181 accattgcta aagaagatgt atcaaaaatt gcctgtgatc attacaaata acagcctgaa
      241 atgttcacaa gaagctgttt gcttatcata ttttcattaa aacatctttt cacctgcttt
      301 acttttccca tgcctgtaac ctgcattgta atcagtctta ttaactgaga acataaatat
      361 gatttattat ggtctgataa tggaagctgc atggaccaag agaagggata tattgtcctt
      421 tgataaaatg gctcttttct ctcaaataga gctctatcat gagagcatgc agaatgtagt
      481 gagtgattat ttcctgaggg tgaatgatgg cagaacccta cagaaaatct tcttgttggc
      541 catgacagcc tctgagtgtc cccaaatctc accgagtttg acaacctgca gacacttttg
      601 atgaactgta ttcttctgtc agagacagcc tgtctggaag gagaaaaggg aacctttatc
      661 atctgatctg ctattattgt cttgatcttt tataagcaat ctctaatgca catgaatata
      721 atatcctttc acacaagtgc caaacataat agaaatgtag ttaaaggacc tttttcctgg
      781 ttatgtaaat gtcctaatac catagttaga aaagatggtt tgtgaatgat agtggtaagg
      841 aaagggtaat caaaatgttt taacattatc tttctgtttt aaagaccaaa tctgtgataa
      901 atagcattta tgatagatag gaggaaccat cttttgctga agcttttacc taaaagatga
      961 tagttttaaa tgtaaaaatg gtgttacatt ttcatataac acataaatgg cagctaatct
     1021 taagccagaa atgattactg gcagatatga cttaaaaaaa atgagtattc cactcaaaat
     1081 cccttcatgg ctgttataga aagaacaaag tatt
//
LOCUS       KCLA01000762             906 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12298upu ultra-conserved element locus uce-2049,
            sequence.
ACCESSION   KCLA01000762
VERSION     KCLA01000762.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12298upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>906
                     /note="ultra-conserved element locus uce-2049"
BASE COUNT          221 a          161 c          167 g          357 t
ORIGIN      
        1 cctatttcta caacttgatt gtacttatgc attttgtacc agtggaactt tttatactgg
       61 agattaaaaa acaaatggaa atttttgtgg cttactctcg tgggccccct cgatcatgac
      121 tgattttcaa gtttgatttc tggatggcag aaagagagtt ggttttgttt cgagaattca
      181 aaactttggc ttgatttctt tttttccctt tgcttatatc tagtgtttag aattttgtct
      241 taacaaaagc ggtaagtttc actttttatt ctgtatcgtg cagttacaca ataaggtaat
      301 tagaattagg agtactcagt cactttgcgt ggataaatgt attagttaaa acgttagggg
      361 tttgcttttt tgctgtttag atcagagttt tttctgattc ttctgtcctc attgtgaaca
      421 taaccgtgta gttgaaacag tcagacttat ttttgtaacg tatgttattg tgtgatgcag
      481 ttttttgctt ctgtctccaa tattaaacca ttttcctaat acttgtctct ctactttgtg
      541 tgttgtattg ttggtggtca ttctgtgttg gtaatacatc tacacacttc actgtttcac
      601 gtgcctggtt tttttttcct atatttgttg gttgtgtaca aaagatacag tcgattccac
      661 ctaagtgaat atctgattgg ggggcaaaag aggacttgta cattttaggc atattatatg
      721 ttcttgtatt attttttttc tctctctctt cctaccccta gtcatgcctt atcactttga
      781 taatctgtct gagcaggaag cattttcaat gagtttcctg caaactcatg ttgaagcctc
      841 gttttggtag cctcctcact gcaaaagctt ctgcacacaa acacacagaa gccacccaaa
      901 gagaat
//
LOCUS       KCLA01000763             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12313upu ultra-conserved element locus uce-72,
            sequence.
ACCESSION   KCLA01000763
VERSION     KCLA01000763.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12313upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-72"
BASE COUNT          285 a          212 c          186 g          240 t
ORIGIN      
        1 caccaagcag aagagcgaac ccccttttgt aggtcatact ttgaacaagc aggaggaagg
       61 tttttgctgc atcttaaggc atagcaatgt ctgagcaggt ctctgcccaa gcaggggttc
      121 agggagtgcc tgctcccatg tcctgctttc taggttgcag aagtgacctt gactcatgtc
      181 accaccacct cccctcatct tgagttcttc ctgctcttgc ggcatagagt gaaggagcag
      241 ggaagggatt ttgggaatac actctgaggt ctcctggaaa cagagctcaa tgcttgctta
      301 accttcctgc ttgcccttct cactaagtta tggcagaaaa acagaacaga aatggagaga
      361 ggggaaagaa tacaagcact ggcacacgag gaaatactga attacatatt ggtagtccaa
      421 aacacaaatc aactcaaaac tacaggagtc caccaacatg cacataaatc atttataacg
      481 ataatccaag gctgggtcca aatctcatta aagtatatga atccttaatc tattttggca
      541 aaaaagagcc aatacgcatt ttttcttttt atcataaatt acagttctgt ggcactgtgc
      601 aaatattacc aagctgtaag acagctgtgc tccattaaaa tgtgtaatgg tcgctgattt
      661 cttacagcac atggtcatca ggctgaatct acagccagta attaggaaga tgaaatgttt
      721 aattgtgcct taattttgat aaaatttatc tgtcacacat cccgtagtca agcagtatgc
      781 tcacaaatca atgtcatcag gcccaagcaa gagctgaagc accacactct tgttcctgac
      841 agattcattt gaatttcaaa ctgctccgga tgagccacca gactagcaaa acaagtcaaa
      901 actttcccag gagcacagct cct
//
LOCUS       KCLA01000764             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12328upu ultra-conserved element locus uce-5255,
            sequence.
ACCESSION   KCLA01000764
VERSION     KCLA01000764.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12328upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-5255"
BASE COUNT          273 a          201 c          214 g          235 t
ORIGIN      
        1 gggggggggt ggggggtgcg aggggaaaac gactggaaca aaacaaaagc aaacaaagaa
       61 aaaacagtct tactacgagc aaagctgtgt ttggaaactt taaaacaaat tctttgcctg
      121 tacttcaagc tttaatattt tctccccttt taaaaaggag cccttaggga agcaatgaag
      181 taaccatgca cattcctatg acatagttat gacagttcag aggctaacta tgtagtgatg
      241 aatgaaacaa aaatgaaatg tggaaagaaa gaagaggaag aaaagagcac acaagaatgc
      301 catgttttaa aataaacaaa agtaacatac ctgttgggac attctgaata agaggttagt
      361 gtcagtgttc tgccatgtcc ccatgaaacc agagtcggtc gctgccgttc ttgttccgaa
      421 ctgcatggag ttatcagtgc aggagtctct taaagtcaag tctcttgccc tctttcgttc
      481 tctgtgtctc tgtgtgtgtc tgtctctcac atccacttct gcctcttctg actgaaaagt
      541 gaaggtggat tttttgagcc tcttggcagc cagtagcagg agtgtagtgt agttaagaag
      601 ctagctgtac tgtgcgtttc atttgggaag gggggattca ggggagaggg tcagagcttc
      661 tttcgcacct tcagcagaga tacccctatc atttatgcat agattgtgac tccccaagct
      721 cgcctttgct cagtttaaca gctgcctgtc aggtgtgcat gcagcactaa ggagacccaa
      781 ccatcagctt caaactctca gccactggat gtcattggat agcagagcaa agagtcaact
      841 gcactgctcc actgtcaggc accaaatgac atcctgcact aacccttcag tctacagata
      901 cacagataca cacacacaca cac
//
LOCUS       KCLA01000765             942 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12344upu ultra-conserved element locus uce-5845,
            sequence.
ACCESSION   KCLA01000765
VERSION     KCLA01000765.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12344upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>942
                     /note="ultra-conserved element locus uce-5845"
BASE COUNT          313 a          168 c          183 g          278 t
ORIGIN      
        1 ctggtctggc tatgttgctg agaggagctg tactggcagt atgatttcta gctctctttc
       61 tacacagaag acctagctct ggtctttctg ggaattcagc aagtattttg aatgtttttg
      121 tagaagctac gtaatttgct tggaagcagt ttgcttttta gaaactattc caagaaaaca
      181 atgaaaccat gaagaaaagg agttagatta cacttgaaca ggagtatcta atacaatttc
      241 agtactgtca ttatagttct taaaagcata ctcacttcac cctgagtaca actaagctga
      301 aattacttga atctgattaa agcagagcac tggagtctga agttttctgt taacaaagga
      361 gcacttacct gtaatcatag ttagagctga taaacttgct aaggctggga tatcaaggtt
      421 aaggctcttt aagtttaagg aaaagtcttt aatagagtcg agccactccc caaatccacg
      481 aaggcactga agtctatgaa gcacaagtcc attgcagaat acaaacttat cctcagcagt
      541 atcagacctc aaataaaaat aattgaaaaa attataaatg catcttccac tttacagcaa
      601 actgcataac cagtattgaa gtgtctgtca ctaaaaatcc aaggcatatt atcctgagac
      661 atatgtgggc attcatattt gacaatatgc ttctcccttg gggccaaagt acaacaaaca
      721 agcttctatg attgcttact tggtagagtt agaagcctga ggttagctgt agcatgtggt
      781 gtcgactgtc taattagtta agattttggt cctgcccaaa ggcataaaca gagaagacat
      841 tttacattaa atactgtatg tttgaaccga aggaatactg attgcctttt gaaatacaaa
      901 tttaataaaa attggagaaa gaagagattc tgcagctctc ag
//
LOCUS       KCLA01000766             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12358upu ultra-conserved element locus uce-4395,
            sequence.
ACCESSION   KCLA01000766
VERSION     KCLA01000766.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12358upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-4395"
BASE COUNT          204 a          139 c          122 g          226 t
ORIGIN      
        1 catgaagagt tggcagacag tagcaaagga cagaaaatgg agctgacttt taggctgctg
       61 ccagagacac tttgttgact ttccattccc aggtttttac ctttgctgat agactatgta
      121 agtgtttcac aatactgctt ctcaagctgt tataggtaca aactatctgg atatttagat
      181 actatggtat ctaataggat gctatcaatc tttcatagta agagaataca taaattataa
      241 acaaatatgt cctttggtct agtggaacag cataatgatc aaagacacac aatagaaatg
      301 tatttgcttc tacagtaagc tttatttccc cagcgctcag tctgcagtga tggacaggca
      361 gtgagctgtc agtttttgtt ctgtctgtca cactacactt acctcctgtt gttttaagta
      421 atcaatatgg gggctgaaat cacctaccac tacctctgct acctactatt ttgtccactc
      481 ataaattatg aatccctgca caacatcaag tctacaattt ctattgcatt tgctaatcat
      541 tgatcaataa ttcaaaagcc tcttcttctt caagggtccc tagtttcctg gaacatatgg
      601 cataaggctg gcagtgttca gaaaactatt cccttatcac aaaaggagcc agggaaaaca
      661 agttgtttaa agttgtttct ttttattttt c
//
LOCUS       KCLA01000767             848 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12374upu ultra-conserved element locus uce-6954,
            sequence.
ACCESSION   KCLA01000767
VERSION     KCLA01000767.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12374upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>848
                     /note="ultra-conserved element locus uce-6954"
BASE COUNT          164 a          225 c          279 g          180 t
ORIGIN      
        1 atgcccaggg tcttgacagt cttcctttcc cgggacagag ccatcctccg tttggcttcc
       61 gtattcttct cgttgcgcct ttcaaaggta gggggagggg gtgagccgca cgcttcgctg
      121 ggcagaggca gatgagtctt gaaggagctg ttgcagtgct ggacctcgat gatctctaga
      181 gcggaccctt cctcaccacg ccgtatcgcg ccgttaacac aggcaccggg cttgggctca
      241 acagtccgcc ggcagccctt gccgggatcc ccgttgctct tcttcggcag gacgactggg
      301 gagagggtga ggcaggtgtc ggcgattttc ttcttctcca ctttcttgac ggtcttgcgg
      361 atcctgaagc gggctgcctt aaagatgcgt ccgtaaagca ccagcatgag gataagcgga
      421 atgtagaagg cgccgaaggt ggagtagatt gtgtatccat ggtccttgct gatggtgcag
      481 gcgtcggggt tcgagcggtc ctcgggcttc ctccagccca gcatgggtgg gatggatatc
      541 aggaagccga tgagccaggt caggctgatg agcactgcgg cccgccgggg cgtccgctta
      601 ttgacatagt cgatggggtc cgtgatggcc caatacctgt ccaaggcgat agcgcacagg
      661 tgcaggatgg aagaggtgca gcacagcacg tccagcgaga tgaagatgtc gcaggtgact
      721 tgacccaggg tccatttgtt cagcacctgg tacagggccg ccatgggcag caccagcacg
      781 gacaccatga ggtcggtaac tgccagagag ccgataagat agttggctac ggtttgcaga
      841 gagcgctc
//
LOCUS       KCLA01000768             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12390upu ultra-conserved element locus uce-4638,
            sequence.
ACCESSION   KCLA01000768
VERSION     KCLA01000768.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12390upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-4638"
BASE COUNT          245 a          167 c          136 g          273 t
ORIGIN      
        1 gacaggacac acacacccct gggtgcactc caaggtccaa gtcacatttt actcgagcag
       61 atcccagaaa gaaatgagag cagggttatg accaacattc gagagccttt tcatacctcg
      121 ctttgttttg ttggcttatg cttccaagta caaactgcag tccatcacaa taatattttc
      181 aataaaatct ctagaaaatg agatgataac aagaccatga tattttaaat tgaatgaatt
      241 tcaagatagt taagaattag actcccagag gaatacttta tgtcacaagc tatgaacact
      301 actgtttaat gtacactcat gctccatctg tttccttttc cattattcga atctcctaac
      361 cagtttctca tgcacacttt tcagctccat gctgtgtttt ctatttattg aatacatttc
      421 tcacttcaac atttttccac ctgagctggc agttgtggct tttatggctg tacacatgca
      481 ggtctccgta gattatgaac ttcatatttt ttcatttgcc tcatgcttca gttctctagc
      541 ttagtaggcc ctaaaatgtg caaattgaga ggtgttttga agtaaccatc gctattctag
      601 gccattgact tgtcatcaat tagattaaaa cattggttta caaaaataat gttttctctt
      661 tacttcataa aaaataaaac acttggaaaa ggaaatccag ctgtgctaag aggcaaatta
      721 ctttatgtga gtaagcaaac attttctggt cagaactaca atgtattatt cagggccatt
      781 ttactacatc agttttaaag taatgtggct gctccgtgtt g
//
LOCUS       KCLA01000769             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12406upu ultra-conserved element locus uce-2551,
            sequence.
ACCESSION   KCLA01000769
VERSION     KCLA01000769.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12406upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-2551"
BASE COUNT          257 a          148 c          145 g          251 t
ORIGIN      
        1 gaaatttgta tgcagcagca tcaggaagca aatacactat tcaatctgtc attatactga
       61 tatgtcagac acagcattga tgtgtcaata taaatgtctt aatttcactg atattaaccg
      121 tagctatgtc tgggacctag tggtccagat ttcatcaggt actctccaaa ttgtacagta
      181 tatgtccttt tcgttcattc ctatttgtga acgttccctg atccagatcc ttgcatgctc
      241 taaatccagt tgatgcctga aaggattcat tagcatttta aaacaacatt gttaatatga
      301 gaccctatat tctaggaatt ccattcacaa gcaacctagg aaacagaggt ggctaattta
      361 tgagaagtac agaacaaagg taaggcactt gccaacaata gtttgttggt ttaactttga
      421 cttgctttcc tgggaaagaa gaaaacagaa ttttcaatgt gaactgtcag acccagttat
      481 gacagggttt cactagttag aaattcagag ttcctcctcc attggcagaa tgatgtaaag
      541 aaaactacca aacagaattc tttcaagttt caactacaac tctacttaaa taatttactt
      601 tttagtttta ctcagactat tctttttaaa cttggttgac attttcgttg acaagcacat
      661 tttattgcac aagttcagta gtgaaattgg cagcaaaaga gagagagagg ggaaaataac
      721 tggctctact caatgagaaa tctactatct tgcctttggg aaaaacagtg ctggcagtga
      781 tgctttctga agcctacaat a
//
LOCUS       KCLA01000770             882 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12421upu ultra-conserved element locus uce-8016,
            sequence.
ACCESSION   KCLA01000770
VERSION     KCLA01000770.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 882)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..882
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12421upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>882
                     /note="ultra-conserved element locus uce-8016"
BASE COUNT          270 a          207 c          132 g          273 t
ORIGIN      
        1 gcagattttc ctgctctagg atctccttta acagctttta actcaggtac caattttcaa
       61 caaatctaat tgcaaattct tcctttagcc cttgatttct tttgccaaat ctgtgtgagg
      121 gcaactgaaa gactgacagc atcagccaca gaaataagga agaagtctca atgcagggaa
      181 cagcagatac atgacagttt tcatcaacac cacctaagca catttcacaa aaaataaagt
      241 caatagagta gctagtcata ctgaacttct catattttga acacaagagg ctgcaaaaga
      301 gatctccttc tcctgaaaat ctgtagtatc cttaccctgt gatttcctca tgtcttttgt
      361 ggctaaagca cgattcccat gtggaacact agtaaaatca ggattggtca cattgttaac
      421 tctcagctct tgccccaacg acttccgacc ataagtattt tccccagatc ctccattgac
      481 actgtagcca cctgtgaaaa aaaagtgaga ttagaataga ccatcagatc atacatttag
      541 tatggtgata tgttgagtta ctcaattaaa acaaaaaaca gcagccctac cctctactac
      601 catctttagc ttcctttttc actttcacat gcagaaatgt ttcgttatgc ctgtcagtct
      661 ccaggtcaca tactcaaaat ctaatcagcc ttttttttaa gcatttgaaa aaacctcctc
      721 tgcaaggaat tttcttgcat ttggagtttc agcattatta cttttgaccc tgtatttcac
      781 aaggtccatc atgtcaaact gctagcacac atggcagata cattcactta cttgttcctt
      841 gattaagtac atcagatttc tcattgttac aaatttacca ca
//
LOCUS       KCLA01000771             976 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12436upu ultra-conserved element locus uce-2016,
            sequence.
ACCESSION   KCLA01000771
VERSION     KCLA01000771.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12436upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>976
                     /note="ultra-conserved element locus uce-2016"
BASE COUNT          285 a          170 c          209 g          312 t
ORIGIN      
        1 aggatttctc tgtgcaacct agaggcagta aaatcaccag caatcattga gagtgagcca
       61 ggacttcagg aattggaaaa aaatatgaaa acctgcatgg tatcaaagca ataataaata
      121 aattgagcaa agccacaaat acttttgggt tgtggttagc tgaagtgtag atttagagct
      181 ctgaactgat gtgtgtgaaa caaagagcac aatgcggaat tcatgttggt cctctggttt
      241 aagtgggtgt gccttctact tctgggtcta gaaataatca tactcgtatc aatctatatt
      301 gtatgacttt tgtaagcggt gaaaatagta tttttcccta aattgtcact tattattgtt
      361 catttgtggc cagtaacata gaaaaatgtt acggctacaa tgtcagaaga atagggacaa
      421 tttgatgttt tcttttgatg ctgtttgttg atatctagac cactgcagct tgattgccta
      481 acattaaacc tataataaca gtgcaatcat agcagtatca tcatgaatgt cgttacaata
      541 gaaacaacat ttacacagcc tctgaatggt aattatcaaa ctttttgtca tgaagcgctt
      601 atttgccagc attgatctgc cccggtcagt tgttagctct tctcatctga ggtgtattga
      661 ttgtataatc agtagataga ggctgcgggc agatgaaatt cagtgttgtt gggcaaatta
      721 ttgtctgctt gcctgttgac ctggaccctg ctggttgtac cttagacagt ggtgggatta
      781 ttactcattt cagtgaccct actctgacag agaactccat attattataa aagataaata
      841 gcatccttct ggatatggtt gagcgcaggt gtcagtgtgg aggcaaaccg aaaatgtagt
      901 gcggccttat tccttgactt ccctgtggtt ttttaacctt tttaaatata tgtgaaaaca
      961 ctgagctctg cagcac
//
LOCUS       KCLA01000772             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12452upu ultra-conserved element locus uce-2775,
            sequence.
ACCESSION   KCLA01000772
VERSION     KCLA01000772.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12452upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-2775"
BASE COUNT          263 a          132 c          145 g          301 t
ORIGIN      
        1 cttattttaa cactaaaact ctttcccctg tccaaaacag tcaaaataga tttcaagttc
       61 tccaagaatt atattctgcg tgtaaatttc actgttggac atatcacttc aaaaaaatga
      121 agaaaaatgc ttgatacact tattgacaga aaagagcaaa taaatgtgat ctgattcggg
      181 aagctgagaa atattttaat aactttttga cattttcctg tagtccttat ttaccttatc
      241 aatagttatg gtgacatatg attgtcaagt ttttatatta aaccaaacta ataaattaaa
      301 catgttgtgt ttatacctga tgaaagctga cgttttggaa aggtgttaaa atatactgac
      361 aggtcttgtt cataaactcc tttggtataa atatgtagat gacatcttta gatattgttt
      421 gtacataggc tgataggcag gaaacgttga caacgtaaca aatgcaaatg tcaaccccac
      481 aatttaacct ttctgtgtag gaaaagatgt tagttttaag ttacatgtat cttttaactt
      541 tattttcaaa gttttttttg agcctgttat cattgctgtt tcatgtgcca cggaaagtaa
      601 cgctgcaata agaaagattt gcacttaaga gcttttctct gtggtgttcc tacttaaatg
      661 actatagcag agagagtgtt ttttcttcta atgctttgtg tttttcatgc tcatctagtg
      721 tcttctgagt ctccataaaa tacgacctgt tcattcagac ttggtggtga ttcagggctt
      781 gtcagtggga ctcaagggca gtaaaccagt aaaactattt ttacatgtta aagcagttta
      841 t
//
LOCUS       KCLA01000773            1045 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12467upu ultra-conserved element locus uce-5947,
            sequence.
ACCESSION   KCLA01000773
VERSION     KCLA01000773.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12467upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1045
                     /note="ultra-conserved element locus uce-5947"
BASE COUNT          209 a          280 c          317 g          239 t
ORIGIN      
        1 gtgggaggca aatcccgtag gggtctgtca ccttgcaggg caagcgcagg atcgtggcac
       61 catttctgcc tctatttagc agttagggca cctctaagta gacgtgagcc gagtgcgggg
      121 cctggtgtca ccacgcggca ggcaccggga gcagcttcct tgccagtgtc ccatggccag
      181 cccgagtgcg ggtgtaatgc cgagctctgc gcggcagcct ctctccccct aattgaaatg
      241 aaaccgtggg caccagcacg gagatatttc gtaggcatcc tgcaagagga gaagcagaag
      301 ctcgagtgat ggttgtttaa taagattata attggcgagt taaagccttg tgatctgttt
      361 gaagactggt ttggtgctgg tgcggcgccg tggcagccga gccccaggtg cctggccaag
      421 catccctcgc cgacatctgg aaccagttgc aatacatcac tgtcaaaacc gctttctata
      481 cgtatctgca tttacacatt agttacccac gcagcactca tcaaaaaagc tgaacagtct
      541 tgacacggtg tccctggtgg aacggcaaag gtgaaccgaa gttgggaggc agtgtctcgc
      601 gtcactgtct gctgagcttt tacaacagga agcctgatta aaactgaaag gaaaatttat
      661 cctgggctcc tgctttgtgt cattttcccg acaacccagc attttgttcc gtgcgaagct
      721 tttcgtggcg ggggccggag gggcttttgg ttttcattgt ctctgccgca cggcagcgcc
      781 ttgccggggc agccaccgcc gctgagtggg ggcggcttat tccccacata attccccttc
      841 cctgctcagt tcttgcctgg aattacagac cccgctgcgg ttccgtcggg tttgttgcgc
      901 aggggtcggc gcaaggtggc ccgtggctgg gcagggtgtt catatgccaa ggggccgcct
      961 gttcgccgcc acgaagggac gagcggctcc tgcgtctgcg gggctgcaga gcggggaaga
     1021 aaataacccg gaatgtcctt gggag
//
LOCUS       KCLA01000774             890 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12482upu ultra-conserved element locus uce-5827,
            sequence.
ACCESSION   KCLA01000774
VERSION     KCLA01000774.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12482upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>890
                     /note="ultra-conserved element locus uce-5827"
BASE COUNT          258 a          200 c          191 g          241 t
ORIGIN      
        1 atttttctgc acaactaaat cattatcgag gtatgagcag acagtatgca ccaccagcat
       61 ctagcggcta cagtgcattt aaggaaaaca tggactaggt cttggtcgaa aaacatccat
      121 atttcagcca gatctctgtt tcctgcccag ccccacctct gagcccaagc atggaccaga
      181 ttttgtcccc acatgtgatc ttgacactaa agattttggt ttctttttcc cctaagagca
      241 gcaacaaggt tagtaagtct ttaaactctc ggttcttacg gctgttaata tttcacattg
      301 ccagcaggga aaggaattaa aactgccagt agctatccag acagatttta aaatcccctt
      361 ccctccccct tctctttgcc tccctcagct tcagaggata ttttccccgc aaattggttt
      421 taaattaagg aaggtgatga aggcaatgtg ccgtctcagc attttcccag gtgcacttaa
      481 tctaatttca ttaaggagat caggacagat gatcgctaca gtcgaaacat taagtctgtc
      541 catttttgta taaaaaaccc attaagtttg tcaaagtgtc ggcgggtggg ctgtttatta
      601 ttggagatga aggcgcgctt tgcttcccca ataaactgtc aggagtggta aactacaaat
      661 gaagtgagat gctgccaaag atttaggcaa agatctccaa ctaattttga cagaggtggg
      721 ggaaaggcca aggcaacaga ggctgtaagg agtcagcgct ttggaagcca agtccatggt
      781 atgtgttcat ttcagcctgg ctcatacaag aacagaagac tggccatcag tgggtatgat
      841 ctaacagaac actgatgctt ctcacagcca agacacagta tcaatcagag
//
LOCUS       KCLA01000775            1041 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12496upu ultra-conserved element locus uce-4725,
            sequence.
ACCESSION   KCLA01000775
VERSION     KCLA01000775.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12496upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1041
                     /note="ultra-conserved element locus uce-4725"
BASE COUNT          320 a          218 c          179 g          324 t
ORIGIN      
        1 agacttattt attgaaatct gacctaacag tccatataag ttttttaaaa tgttatttac
       61 aatcatatgt taaagaacca caaagtagaa gttacacagt atgcataaga ccagtctaaa
      121 aatagagagg tctgctttat tcagtgaaca ataaagtgat attttaaaac gaacaggatt
      181 ggtcgcctgt tgctattaat ttatttcagc agttgctcaa gaaaaaaaat gattctctga
      241 aagataacag tctcttaatg gttaggtcgc ttcagcacta ctgtaggcaa catgcatgac
      301 ctccttggaa agaacaaacc ctaattagca ttgcctacaa tccctctttc caaaccatac
      361 cttttaacct gtaccccatc ttttccaata tttccattaa ggttgtcaaa agcagaagtt
      421 tgggaacctt tccttgtgac cttggcattt cttctcaggc ttaacgtatt ggcatttttt
      481 cctctgactg catcgcttct catttgtcat gattattgtt gaatttttca gctgtcattc
      541 ccgaacgtaa atcaatggtt gtcgacttcc cctttgtcat atctgcactg ccaacagcct
      601 ttcccttcta aatgaggctt cctccctttc catccattaa aaaaggcctg tcttttggag
      661 aagtcaatcc tttgttaggt cactccattt atcattcttc caatcagtac ctgacacact
      721 tattcagcca ggtcttcaac cacacaatca ttgttcattt tgggaggggg gagaaggaga
      781 gaaggaaggg gacactattt atgcatggtg gtttttgcca tccatcttga ccagttttat
      841 atttttcaat gcccttatat ctttagggtc cttactttct tgaaggaaac accaaattca
      901 gaaagaaaaa acaccacacc cacaagggaa agggaagaaa gactgctaag aaaatacttt
      961 gctgtcttaa gaagtagatg aaactaaatg tgagagaagc atctaacaaa acaaacatag
     1021 ttctggtaca aagggggcct a
//
LOCUS       KCLA01000776             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12512upu ultra-conserved element locus uce-6659,
            sequence.
ACCESSION   KCLA01000776
VERSION     KCLA01000776.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12512upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-6659"
BASE COUNT          234 a          197 c          166 g          233 t
ORIGIN      
        1 tataaaaaaa gcacgcaaat ctacagtagg gttattggac ttcagataaa gtacatgagt
       61 gacatgattg atacttttgc ttcgttgact gttttaagaa aactccaata tttctattct
      121 agaatgtacc ggagcagttc aagtgaactc gttgggctta ctgcatacat tggaactctg
      181 acttcttgat tctctcttgt aggcgtacca acgtttacaa atccagcagc agatgttaca
      241 ggctcagcgt aatgtttccg gacccatgag acaacaggag cagcaagtag gtttgcctgc
      301 cagttcagtc tagtttggtt tcaatagctt aaagagattg tgctgcatta gaccaaagca
      361 gctaaagcat ccttagaaac aataatgtac tgcatggctc cagtattgaa agggaaaaag
      421 tgctggagta ataaaaccgt tttccagctt tcagttattg agggaaagct tttcaactgt
      481 taataaagtc aatttttatt tgtaaagaga tctactgtgt tatatcgtgg tagagaaagc
      541 cacaagaact gtagcgtctt tttgttcaat tgagcattta ttgattcttt ctctctgcag
      601 gttgcacgta caatcaataa catgcagcag cagatccagc agcaccagcg ccagctggcc
      661 caggccctgc ttatgaagca gcagcctccc cctccacatc tctctttgca cccctctgca
      721 ggcaaatcag ccatggatag cttttcaccc catccccagg ctcccggcct acctgacctg
      781 cagaccaaag agcaacagtc ttcaccgaac acctttgctc cttaccctct
//
LOCUS       KCLA01000777             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12528upu ultra-conserved element locus uce-5864,
            sequence.
ACCESSION   KCLA01000777
VERSION     KCLA01000777.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12528upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-5864"
BASE COUNT          225 a          223 c          272 g          259 t
ORIGIN      
        1 cagatgcaga ggcactgcca gggaagcagc gcggtgtgcg ccgccgcgga gccgagcacc
       61 tcctcacctc ttcagcccct gaattgggag cagttgctat cggaggcgat tcctctccgt
      121 cgggcgttat tgtttgattg cgatgaatta ccttctcggg agcaaatccc ggggataaat
      181 ccccttgact gacgggcatg ctgctcatga cgcggtgctg tggtccaggg caacctttca
      241 aaatccatca gcttttcagt acgagctggg tgcttgccca cctcgcggag ttcccattaa
      301 gatccgcatt tgtcaccaac ctgccgctcc agcgcgcgcg ggagacgagt tgccgcccct
      361 aaacccactc cgcttgtagg gtaaagtaaa tgcatgtctt tgtaggagaa taaataaaaa
      421 gagcaagctg agtcaataag cgggttcaat tcctgcctct agcgatggcg ggcagctcat
      481 tttgtagatg tgggtgtttt gtttacattt ataatgcagc tttatttaat gctgacagat
      541 atagcttgtg gcaaatgata gtcagaatgt atgagcagtc ataatgcttc tgtcttctta
      601 tagtgtgctg ctgaaaataa gcagttcacc tctgttttta ttgaggaaag gatatgagac
      661 agctatagct tcgcgaggct atttattgag ttgttttact agctgtgaac atgccgcttt
      721 atagcagttg tgaaaatgga ctttgctagt gtgtgggaaa ggaaataaca tcgcagtata
      781 caagggtagt aaaagagccc tctataaata atttttcagg ctgaagaata ttctcattta
      841 agcagctaga gagcctggtg gtgcctgcca ggtgccggct ttccctgggt cggccgcggt
      901 tgctctgcca ggggccgttg gccttttcac gtaagcgaag ccgaggcgct ggggagccgg
      961 cagggagagt tgcgcctgg
//
LOCUS       KCLA01000778             383 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12542upu ultra-conserved element locus uce-3503,
            sequence.
ACCESSION   KCLA01000778
VERSION     KCLA01000778.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 383)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..383
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12542upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>383
                     /note="ultra-conserved element locus uce-3503"
BASE COUNT          143 a           53 c           76 g          111 t
ORIGIN      
        1 taatagagta atcaaataaa cctgccaaat agcaactttt tttaaaactg cagaggcatg
       61 ctaacaaatc tatttgatca atatatggga tgtgagaaaa gaggagacaa gattgactga
      121 tgaataaaat ggaactgaca caaataggct gacagccagt cgcaagtctc tttagggcaa
      181 atgcaattaa cttagaataa tagactcaaa tttgatggtt agaaatgcat ttttattaac
      241 aatcacagcc tgaatcatta tgcactctta tgaataaaat tgtagttaga ctggaagtct
      301 gtgtgtacat gtatgcatgt acatacaaaa aaaccttgtt gaaggagggc tttatttttg
      361 tgacagaata gctggatgag att
//
LOCUS       KCLA01000779             904 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12558upu ultra-conserved element locus uce-7282,
            sequence.
ACCESSION   KCLA01000779
VERSION     KCLA01000779.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 904)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 904)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..904
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12558upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>904
                     /note="ultra-conserved element locus uce-7282"
BASE COUNT          218 a          229 c          262 g          195 t
ORIGIN      
        1 caggaaggtc cccacacttg gcactagcct cttcaggcct ggggctgcca acagtggggg
       61 acattcctgg gcaaggggtg tccccatatg cttcatgaga gacacctggg gcagggaggg
      121 agcaggctgc cttcccagtc cagatgcatc cctcggaact cagttaggag caactgggag
      181 agcacagtgg gaggctgggg gaaaccacgg ggacagctct gcaaagctcc tgacctctag
      241 gtgctggtgc caacctcagc tgggctcctc cacctctgaa tcagcagcag cagggagcag
      301 gcatgtgccc cagcctcagg attagcactg gtccatctct gcttcacgtt ctgcttcctg
      361 aatcaaggtc attgggtaca gccgctatac ctgagcaaac tagctaagca gtcagggtgg
      421 aagttggcct gaccactgaa ggtcaagtgt gcacttatgc atattcaaag ctgtctgcag
      481 gatcgattgg gttttaattg tttttcctgg ggttttggaa ggaagtgcca ggagcattga
      541 tcagtcccag acgaggctgc tcacacttca gggctggcag ggaccatgac tttgctgcag
      601 gcagtgggaa atgcaggcag agaagaaggc aagccaaggg agaggtcagc cagcccggcc
      661 agaaggagga gccacctctg ggctgcactg gaaaataaag ttttttaatt aaaattggca
      721 attctgagcc gcctgccggc agcagccacg caatcaagag caagaagctt tgctgtttaa
      781 tatttaaaga caacgtttaa tctttaaaca gtaaagttct tcttctgact gttaaagcaa
      841 ggcagaaagt ccccaaggct ccctgacttg ggtcttctca gcctgctggg gtggccctgg
      901 ccac
//
LOCUS       KCLA01000780             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12573upu ultra-conserved element locus uce-943,
            sequence.
ACCESSION   KCLA01000780
VERSION     KCLA01000780.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12573upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-943"
BASE COUNT          217 a          108 c          147 g          280 t
ORIGIN      
        1 cactatttta gcataataaa agaaagtcca aagagctcct atatagacta ctccagataa
       61 ctttgcttca tcggtatttg tagcttattg taactttttt aaagaaatac aggatcatca
      121 tcattgtatt gtacaaaagc gctttgatta acataacagc tatatagttt tttaatttta
      181 ggagaaacct gtggagacag tgatctagtc tttaagagtc ctttcagtac aacgtctgac
      241 taaagacatg gcctttaata tctgttggga aggaaatgtc cagacttttc aaccttttat
      301 tgtatgtttc cttttccttg tttacatagg gaacaatgtt tatagttgtg tgtacagtgg
      361 gggtctacaa caagaagtgt atattttaaa acaatttttt aatgatttaa caattttttg
      421 taaatcattt tcaggcttct gcagctgtag attctcactg tgaattccct tgcttgctca
      481 tgcataagtg tatttgcaat accaaatata caggtttagt acttttgcct gttagtgatt
      541 gttttacatg tgtaacgttt tggttgagat gttaaatggt ggaagagtac tgtggatgtg
      601 aatgtgggaa gtaattttaa tcatgtgtaa ttggtcacag ggcctaagtt gcagtaatta
      661 acttttgctg atttatttaa caatgccttg ttgctttgta tgcattaacg tttgggtgta
      721 aagattgtgt gtatatccaa cagggagcca ca
//
LOCUS       KCLA01000781             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12589upu ultra-conserved element locus uce-1389,
            sequence.
ACCESSION   KCLA01000781
VERSION     KCLA01000781.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12589upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-1389"
BASE COUNT          272 a          141 c          137 g          221 t
ORIGIN      
        1 tcaagtatca tctcagataa tctcaaccag ctgacaatga cagtagttgt ctagatcaca
       61 gcagctctgt acccactcct caacttcaag gtggtgcaga gtgcctgaag aatttaaaaa
      121 caaaaactga aaaaagcaca aatttggaag taaatgaaat aggaagaccc tctgaaactc
      181 aagctttagt gacagcccct actgatagta cagctatttt cccaatacat gtgaaatctg
      241 tctatggaaa gaaagataag aagcaaggga acagtgcgta tttaaaaaca tgtgcacacc
      301 gtctgctgtt ttaaactttt gcctccccac agctaaaata tcattttttt aagtccataa
      361 aatttcagat agtgtgcaaa atgtttatat attaccaagg tctcccttta aaaggtttat
      421 acttttactt tatgacctgt ccttgatttg acacttccgc tcatcagaaa gggatttata
      481 aaataatcct gaaggtgagg aacagacatc tgtcagggac tggctgagtt tcactttgcg
      541 aaatttaaga agggagagaa atcctgttaa gctctcttta gtcaccaata gacatcaaag
      601 gtaataatta aagaagacag acgtcataaa aataaatgta tgtggttctt tataatgcac
      661 aagcactgca gtgtatgaaa catctatttc agtgaaagaa aacacaacat tccaaaggag
      721 caaaaatctg ttttgtttga gtgtttttgc ctagtcaagt aacattttaa a
//
LOCUS       KCLA01000782             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12604upu ultra-conserved element locus uce-3713,
            sequence.
ACCESSION   KCLA01000782
VERSION     KCLA01000782.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-3713"
BASE COUNT          293 a          140 c          127 g          278 t
ORIGIN      
        1 cagaaagtcg aaaagcacaa acacggattt gtttttcagt atcacctatg tctgttgtac
       61 agtacgcaac attttaattg acgatgctga ataaatgtgg ccctgtacag tgtatttact
      121 ccaatgttta acttgtgaca tttaataaaa taagagctta aacagataag gattggttta
      181 atacaaaaac tattagaaac actcaggtaa ttgaaaacaa aattctcagc cgttatcaga
      241 tgtaggaaaa ccacctaaga atccataaaa aacgctttca agctccaata agttagctac
      301 aatagacctt ttttgtcaaa cacaaaaata aatatcattg attttatgaa taaatacatt
      361 ttcttaaatg atttagaaag ctctgtttat tcatatacag acagtgttta gaatatgtag
      421 tagccagtat gtctgcagat atatttatgt tggactgttt agattggctt cacctctgta
      481 ataatttata acagtttcaa tgtaaacctg ccattgagca ggtcataaag gtcctgcatt
      541 ttaaccatca taatttcaga taaacccaca aaactatttc ttgcaggaaa gctctagtta
      601 atccttgaat atctttgcga tggaatttgg atttttattt aggcaaatta aaaaagcaat
      661 aaaggctgca ttttaactgt gtttgatatt ccagcagcgg tgataattta aacgacatac
      721 attttgtttt gttttacagc agtaactctt cattgacact tcttaataca aaaattctac
      781 acttcgattg atttcaaacc ttgcttgaaa gagaaagcta ctgttccttc caaaacgt
//
LOCUS       KCLA01000783             409 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12618upu ultra-conserved element locus uce-1361,
            sequence.
ACCESSION   KCLA01000783
VERSION     KCLA01000783.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 409)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..409
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12618upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>409
                     /note="ultra-conserved element locus uce-1361"
BASE COUNT          145 a           88 c           63 g          113 t
ORIGIN      
        1 gggcgatgct gattggaata gaaagggtta ccatacctct caggacattt tgataagata
       61 ttttaatacc aatttattaa agtaccagca tactagtgat attgctgcaa ttcattgtac
      121 ctagaaaact cagcatttta tagagttcta aggcagccca ataaagactc gctccactct
      181 aataaagcaa tactccgggc aaatttacgg ttgagttcta ttctaataaa tctccaattg
      241 taaactaatg aaaagacccc agtatacctc cctcatccac tcacacaaaa ggaagcaatt
      301 tgaaaatgtt tgacaaagta acactgcaca tcatcagcac tgaagaacct catttcccgt
      361 ccatggagat attgcattat cattcatatt aaagaataac ccaatggca
//
LOCUS       KCLA01000784             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12633upu ultra-conserved element locus uce-180,
            sequence.
ACCESSION   KCLA01000784
VERSION     KCLA01000784.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12633upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-180"
BASE COUNT          150 a           81 c           73 g          116 t
ORIGIN      
        1 ctagcctcta aacaccacca caaagcagat caggcatgaa atggtcataa gtattagttt
       61 ccagtagatt tcacttttct ttttcaagct acagcttgac attttgcaaa atctccagag
      121 accaaacagt gaaatcgagt tactgcagga gtgaactgta aattccatga aaccatgtaa
      181 tatatcttaa cacagatgga cacagtacat taaaataact gtggatgata atagaacaat
      241 accatctgtt ttgtctgggg aagacaacgc acatcagcta cactgtcagt catatcatat
      301 atctttagtg tcatcatgtg gtagacgaca actctatatg tcaggccaag tgtacacttc
      361 tttagggatt actgaaaaca gcaaaaagtt aactgtgaaa aagaatgcat aaaaatgctt
//
LOCUS       KCLA01000785            1084 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12648upu ultra-conserved element locus uce-7297,
            sequence.
ACCESSION   KCLA01000785
VERSION     KCLA01000785.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12648upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1084
                     /note="ultra-conserved element locus uce-7297"
BASE COUNT          336 a          238 c          201 g          309 t
ORIGIN      
        1 gtgagaccac tgctaccagc tggcatttag caatttgcag aataatccct tgtttatttc
       61 ttaggacatt gcttataatt tgttcgtatg catcttgttt taagttggaa acaaatcagc
      121 acagaaagca acccagataa cagcagcaag ccccccggtt ttcaggctga acaagaaagc
      181 atgcaagcag catcactcgg aggatgcacg gacgactaga atataggaat tcttatccta
      241 tgtaaagcta tgtagccttg cacaaacatc ctttggcatc ttgtttctgg cctacctgga
      301 cagtacaaaa catgtttatc agaccataca tgcccagaac ctgaactgca agcagttaaa
      361 tattgaagat cgctaagctg caaaattaaa gcatgcttct atgctttagc tacacagaca
      421 acaataaaac aaagcctcca caaccacctg taataatatg cctattcagc cagcaattcc
      481 aaagtactca gcaacacaag gtagacattt tctgcagctg gttttacatg tacattcctg
      541 ccaaattgtt gtcttgtctc ctcttacctt cacattagtc cggagtgcac agtaacatgc
      601 aaaaaacatt gcagtaaaca aggagcatat ggaccagtat tcagcgtctc tgctctgcac
      661 aaacggtaca cacacgatcc cgagcatgtg ctactaagga gcatccgttc cctctgtcag
      721 tttgaaaatg cattgatctc tgttttttcg actacagaaa gacatgtctt gaaggcactg
      781 agtgaaagct acatatctct tcatcaacta tatatagaaa tatgcccagt aatttcaatt
      841 agcagagaat tcggcttctg aaacttggac ttcagttgct tttccttcca gcattttaaa
      901 ttcagagggg aaaaaggagg gggagctcac ccagagggga aaggtgaaaa attaaattgt
      961 aagcagtgag ttacttatat ttcctcctgg ctttgatgtt tttcttttca atattttacg
     1021 aacgttatgc acagaaaagg aagatttcca attttcaaat ttactgtaga ttctgcactg
     1081 tttc
//
LOCUS       KCLA01000786            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12664upu ultra-conserved element locus uce-6260,
            sequence.
ACCESSION   KCLA01000786
VERSION     KCLA01000786.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-6260"
BASE COUNT          304 a          209 c          163 g          327 t
ORIGIN      
        1 ttttaaattg catttatcaa gcattcataa atttggccac attacccata ctctgacaat
       61 acatgacagg gaagtcattt aatgccttgt gcagtgcaat agttctcatg taagagacaa
      121 aacagtcaaa taactgagct ttcattatgc aatactgtag ctgcatattc acataacata
      181 aacatttaca gtagctgggt tattcacaga tgaaaatcaa atctcttcca gttcagatga
      241 ttcctctgca taaggagaat gaataaatta aaagtgtgct cgagcaattt actcttccca
      301 agcagctatc ctgcaagctc tgcagaggat atcaaaacct gctcatatct agcagagtca
      361 actccaagtt tgtgtatctc agtccactct acctttccat caggcagtac atgcggaaat
      421 ggaaaagtag ctctctaatt aatcaaagtc agatctgcct gaacgcctgg agttgctgct
      481 gatccttgtc ccagcttcta ccatgttctc tctctatgtt ttttaccttg aaaacttctg
      541 ctctgagctg ggaatgcctg aagggcttgc acggtaagtc aatgtgaaat tatctcagca
      601 ggaagaagtt gcttttcagc ttaaatgatt taaggcagca atttttcaca ctctcaaact
      661 ctgacaaacg cacagattgc ctctcatgtt tgacttcaaa atattcaaag aaaagctatt
      721 tttattaaaa acactccaga gaaaattgta tgtcacttgt tctctgatat aacttcattt
      781 ctcctgacag tgacaatttt cacctcagta caatttcttt attttttcca aagctaattc
      841 tgcttaatat tagtatttat acaaactcgt atcaacttgt ctctgtgaaa cgttcagggg
      901 tgtcaggtaa atgttgctca ctgtcagtca tcttccttgg tgctcaaaat gatcaataga
      961 ttaaaaactg cagctactta cttgagatat tattgtttta ttt
//
LOCUS       KCLA01000787            1051 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12680upu ultra-conserved element locus uce-7764,
            sequence.
ACCESSION   KCLA01000787
VERSION     KCLA01000787.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1051
                     /note="ultra-conserved element locus uce-7764"
BASE COUNT          270 a          259 c          267 g          255 t
ORIGIN      
        1 gaagacagca gaaaaggagc agataatgca agcagtgtgc cataaattta agtctcatct
       61 tatggaaatc caggcaagta ggaggttgcc cactctgcag cacacagcag ggcctgtccc
      121 ttccttctaa acccaggtgc cattggcatg gtggcaggac ccctatcaaa aggcaagaga
      181 tactggttgt tcgtcttctg ctctacaaaa gtctcctaga aatctcctgt cccagccagg
      241 cagacacagc actcagaacc taccagaatc agttccgggg tcagttgcag gacagcctgg
      301 gaatgccatg ctgatggagg tcatggtgag caccgttcca ctgtgtgcct ctcactgttg
      361 cttaaagggc cacccaaaag ggccagaagt ccccagacta tggccacatg atcccttcgt
      421 gcagctgggc ctatccagca ctttgcagag tgcttcccct ttaagacagg actgtgcagt
      481 ctttagttgc ttgttgaaac tgttcagttt taggacaggg ggggaggtca cacctgttgt
      541 ggaacttgat agaaggctta tttataaact ttcagagctt gggattcttg cagagctgaa
      601 tgcgctgatg tccggagggg aaggtcaccg aaatgcttgt ttataaaagc agcagcaact
      661 ggaaaaacca taaaagtctg aaatgatgaa attaagaagc tatttgatca ggcgcacggg
      721 ctgtgtgctc tgtggtcagc cagaaaaacc gcgtacgtaa gagcctaccc tgctggctgc
      781 tgccccgaaa ttctcctcca gaggcaaatg cattgcaccc aaagagggcg aaaaataatc
      841 agctgcttag tatggtctgc ttttgggtca ctggctggtc cagtcttaat ttgaccttgc
      901 atggaaaggg gaaagcctcc tctgcacttg ggatcactgt taatccactc tttagtttcg
      961 caacttcaaa gagctcgacc acttgttaac gcgcagggtg ttctttcagc acggggtcag
     1021 tcacagtccc caaatctgcc cctgttcagt g
//
LOCUS       KCLA01000788            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12695upu ultra-conserved element locus uce-2370,
            sequence.
ACCESSION   KCLA01000788
VERSION     KCLA01000788.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12695upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-2370"
BASE COUNT          303 a          195 c          204 g          324 t
ORIGIN      
        1 ggtggtgctg aaataaaacc acgcatggaa ggtctatact ctgtgttgtt cttgacttgc
       61 agagtgtctt agatgtgtgt tgtaagtcct tgacaaactt tgttggttta gagatgtgac
      121 ggatgtattt tctgatctga gaagtatttg ggggatagag aaaatatttt ttcatcctct
      181 ttcccctcca ccctcccccc accaaaaaat agtatcagac ttctgtgctg ctctaatctt
      241 agagactgaa taatacagtt ggagatttga catattctta ctgaataaaa atcaggagac
      301 ccttaccaaa attgttagca aaagggactg gcagaactag gtacggacta gggtggattt
      361 ttttttttct ccccttcctt tccctagctg tctaggagga gtaaagcagg tggctccccg
      421 tggctgactt ttcatgacaa catgccatta gaaattgcgg tcctgttgat caatccactc
      481 gacatgacag ctttgccgca aggcctggct ctttgagcac cagcgctctg gcttttccct
      541 ccttttttcc tgcactaatt ggtgaaagtt tttactgtgc ttgtggcata ggaaattctt
      601 ttgaacattg tcacaatcaa gtgttgactt ctttagaatt gcaagtaggt taagtgagta
      661 tcaacattaa aaaaaatcca caaaaggtat tactgtcgaa attttattaa ggtaaaatag
      721 gaaaacacag tgattgaatt aacaaaataa cattttgatg ccaaggagtc aattaaaaaa
      781 tgttcctttt caacattgca ttcccgctgc catgtttgta tcttgaaaag gagaaaggaa
      841 gagaccaatt tggagttctt attttcattt tcgctgcgtc gaaagcacag aaccaaataa
      901 tgtatttcag cttaaacgca cacaagtggc tgcatcctag tgcctgaaaa ttaaataaat
      961 agtggctttt tcagtgattc tagatacttg aaaccattat gcaccaaata agatatctta
     1021 gcaaat
//
LOCUS       KCLA01000789            1211 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12710upu ultra-conserved element locus uce-8046,
            sequence.
ACCESSION   KCLA01000789
VERSION     KCLA01000789.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1211
                     /note="ultra-conserved element locus uce-8046"
BASE COUNT          277 a          283 c          274 g          377 t
ORIGIN      
        1 aatgcacttg caggaggcca cctgaatcag accctgcttt agctgagagt gtaaactgag
       61 cactgagaat ctgttgggat gcttgacgga ctaacacctg tcttggaggt ttcatcacag
      121 acaactttgc tttttcatga tacaaagacc tatggtgcct tctatcaatc cttttagttt
      181 atcctttccc aagagtgccg tgtgtgttgg gaggggcagc aaacgcggtg tcatggttag
      241 tgcagtgtga cttgctctct gggacccagt aaagtatcaa tagccaaaca ctcggttttg
      301 ccttttaagt gtgtcaatgc agagaacctg ttccgtgtgt tcccctcagg gatgtgtaat
      361 tgctaagagg aacatgacca gagggtctgg gtgttggttt cactgcatcc attacaattc
      421 tggagtctgc tcgaacagca tagaatgcca gtgaggtgaa accttttctg gccctattgc
      481 tgaacccact tgtcctgcct cagtacgtgt gtttcactca ctgcctgatc tacattacag
      541 ggaagctgta caccactaat ggtagcaact cttcatcctc aagtagccac catcacgccg
      601 cagtatgcgg tcccctttac tctgaactgc gcagccggcc ggccagcgct agtagaacag
      661 acggctgcag tactggtaat tgcctccctt gattgtgttc actaactgag tttttgtttt
      721 aacttagact tgcagagggc atggaagcat gtgccatctt gtggctgtgt tcttgctaca
      781 tcttaatgtc ttgttgtttt cctcccaaca ttgctgaagc actgtctgac tctgacgttt
      841 agtgtggctc tgtaaagaat ccagatccat tgaccgttac tttttactag cctagtagta
      901 caaagctctt ctaagctata ctacagcaga gttacgattg ttctcgttct tgcttactat
      961 cctgtctttg ccttttgact gctgagtaca gagggatcag tctttagctt gactctgcta
     1021 caggtacctg gatggccaga atttgaacta cttggcaaat tagctccgta tttcgctctc
     1081 aacacgtgta aagctgcttt gcatgtagaa gtgtttcagg tcattaagcg caggctaaaa
     1141 tctctattga tagccaattc tttaatgtat tgctttagca gtcgatttct cctaacctct
     1201 gttgaacagt g
//
LOCUS       KCLA01000790             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12726upu ultra-conserved element locus uce-169,
            sequence.
ACCESSION   KCLA01000790
VERSION     KCLA01000790.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-169"
BASE COUNT          242 a          136 c          171 g          268 t
ORIGIN      
        1 tactgtttac tgtaatgcgc atatgtacac agatgttggt ggctgcatat ctggaagttt
       61 gcataaacat agcatagaag aaattcacag taactggtta acttcttatc tagccttttt
      121 gttccaaatt gcactttttg tgttgaaaaa acaccatctt aaaagaaagg acaatatttt
      181 gtgcatcaga tttatttgct ggcaaagtca tagcacaata gcctgatatt ttttaaggtt
      241 taaagactga aggaagtcaa ggaatacttt gtgagtttta accattttaa gtaaaccatt
      301 ccttatcatc aaagggttat cttctgacat tgcacaggga tagagctata tagtaaataa
      361 tgacttgtgg gatgcagcca ggcttgcaga aaataactat ttgagggatg gtgcatgaac
      421 agaaagctgt aattttgaca ggtggcaagg tgtcgtgtca ccaagccctt ctaaagcctc
      481 atacctcata cctattgatt aatggctcta attaaggaat gaaatcaagc atgtgaagac
      541 aggggatcgc tttaggtcct tgtttggtag ttttctcttc ctggcgcaca actcatccat
      601 ctaaatatga ctgctctttc atttattact gttggatgat accaaaaagg aactggagga
      661 ggtgcatgct gattttgtca tggtcattca gaagcttgat ttggcaagag ctgagttaag
      721 acaatacgtg tgatcacagt cagaataaat gctgtactac cagctggttg cttatctgct
      781 tttggttggt taattcttct catagttttt taaatgt
//
LOCUS       KCLA01000791            1022 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12742upu ultra-conserved element locus uce-7538,
            sequence.
ACCESSION   KCLA01000791
VERSION     KCLA01000791.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12742upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1022
                     /note="ultra-conserved element locus uce-7538"
BASE COUNT          242 a          196 c          240 g          344 t
ORIGIN      
        1 tcaatagaag ttgtttgatg gttctgcaaa agggtaagaa acctgttctt aaacttttat
       61 tctcctgtat ttgagtcagt ccagaaagtt ttctgctttt gtttttctcg cttcgctttg
      121 ttgtcacctg tctgtccttg aaaggttttt gtcactgctg tttagctgat gtggcgtaag
      181 ctgatactta ggaaatgctc cttattgggc agtgatcttg aacaggtgaa gggggtgatt
      241 agaaagctta tgaaaggttt actgtggtgg tcctcggggc aatagggttc cttcgagctt
      301 gtgtttttat ttgtttagct agggatgaaa gtgaagagaa aaatcagtcc gtcctttcag
      361 ctgaagaatg tcctcttagc actagtgaga ctcagtaagg ctttctgaga tgtttagcct
      421 tgatttaatt catatttaag atctctcctc ccagcacatt aatataacgt caatgtagaa
      481 tgcattgcat ggtgtaatta ctgaagagag cagtagttgg gaaaacagac ggtaattgaa
      541 cacatggctg tttattacaa caggacagtg ctcctacgct ggtatttagg gcattaatag
      601 ggaagaattg atttgttgtt ttaagatgaa ttcaatcact gttgcttagc cctttgtttg
      661 ttcaggccaa gttatgcttt gtttgtgtta tgtgcccaag aggtttacac accacagcgt
      721 ggcattagtc atgcagaggg cttgggagca gagagccatt taaatgaaca aaggactttt
      781 ttttttggct ctgtttatct tgctctctac ttttgttacc ctctaatgta tctccatctc
      841 tctctccccc ctcctttatg tcccaaacag ttttgatcaa tgcagaggtc ctcccgcttt
      901 cttccttcct cctctgcttt gttcaccctc ctggagacaa atggagctct gattgacagg
      961 tggcaacgag gggttgcggc gtggtacaaa caggagcggt agctcccaag ttgggacaag
     1021 ga
//
LOCUS       KCLA01000792             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12758upu ultra-conserved element locus uce-5978,
            sequence.
ACCESSION   KCLA01000792
VERSION     KCLA01000792.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12758upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-5978"
BASE COUNT          184 a          131 c          110 g          186 t
ORIGIN      
        1 tcctcctcat ccaccacagt ccacggagtt aggggtggga ggagaagctc tcgtgagtgc
       61 acatgaaccc ccctaagtgc acgcaggacc gagggcagga agccaaaata aaatcttcct
      121 ttcctttctc tttttttttc ctcccagagt gtatcactgg ctattgtcct tatcaaacaa
      181 agccctttca tcagaggttc tttaacacac tttatttctc ttttattttg ctttgaaata
      241 agccgggcaa caattaattt cagagagaga gagagaaaga gagaattcaa caaggatcta
      301 ttactactct cggcttctat tgctgtaatg aaaatctatt tcctttccct tttgtgtccc
      361 atataattta atgcccattt tattaatggt ctgaaataat tacggaacct tttgtgattc
      421 tcaagtatgt ttcatttaat tgtgcaataa acgcctaatc tcttcctcca tctgaagcta
      481 ttatggcatt aaaattaaca attatgcagc aatgcgcccg ggtccataga aatcactcca
      541 gataactaga catatataaa tcattcatga gaacaatttc tgaaaagaaa cgaagggaga
      601 gaaacggggg g
//
LOCUS       KCLA01000793             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12773upu ultra-conserved element locus uce-5510,
            sequence.
ACCESSION   KCLA01000793
VERSION     KCLA01000793.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-5510"
BASE COUNT          127 a          146 c          195 g          150 t
ORIGIN      
        1 tccctcctcc cctgcccgca ggtctcccca cctcatccga gaggccgttg cccgcggctg
       61 gtgatttagt ggcccgtgcg gtgccacacg tcttcagaat tgcagcgccc atttccagct
      121 gaaataattc ctgccgggag aggctcctat tacggcgaga gcggtgcggc cgtggtgatt
      181 tattgttatt tatggtgccg gggccttgtt tatgcgcgat gggtgaggtg ctggggatgg
      241 aaatgccatt atgcaaatga cattgaatgt cctcactgag cctaagtaat ttttgtgttg
      301 gacgattaaa cctcatctgt tattgatagg ggctgcagtc gggctattaa agagtcccaa
      361 cagtagttac tcccagtaat gggaaaatgg agaggaagag gctaaacaat tgcctcaagt
      421 gcgccctgat tgtctgcgag gagtggagcg cagacggctc cccggatgga aatcgtggtt
      481 actacttagg gataaataaa aggggaggcc gcgatgccag caggaggact cgctccttcc
      541 caagcttctc ctcgtgtttt ttttcattcc ggggggcggt gggagaaggg aggatgcggc
      601 gggcaggcgg cggcggtg
//
LOCUS       KCLA01000794             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12788upu ultra-conserved element locus uce-7943,
            sequence.
ACCESSION   KCLA01000794
VERSION     KCLA01000794.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-7943"
BASE COUNT          145 a           64 c           97 g          123 t
ORIGIN      
        1 agtttattat cagtcattat ggttagggtg gacaaagtgg agtttgcagc tgcattagta
       61 gccttaagat tttgcaaggc tgtagtcaac acttctgtga agtgataaaa caatagaatc
      121 ataggatggt ttatgagaga gtacatatat gagagtacac ttctgtgtta aagctgctta
      181 aaaatagctg tattatttac tggtctagga aaaaccatac tggactatgg gtaagacatt
      241 ttcccgttct taattaaact tataacagga aaaactaccg aagatatgtt tcagcctcaa
      301 tcctatataa aacagtcaaa acagggatgt gggaaaatga tggagcaaag cacaggtaag
      361 tgtcaagaag ggcatgggtc ttcaccatat gtagcttcag gatgtaggac aatgaaccca
      421 gttgcattt
//
LOCUS       KCLA01000795             997 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12802upu ultra-conserved element locus uce-2451,
            sequence.
ACCESSION   KCLA01000795
VERSION     KCLA01000795.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>997
                     /note="ultra-conserved element locus uce-2451"
BASE COUNT          232 a          221 c          219 g          325 t
ORIGIN      
        1 ttctccactg gcgagaggtc cattctggtg tttgggtgca tttctttgtc aaattctata
       61 ccgctgtaag ctgtggggat ctttttattt cagtgggtct gtagcggttt gcactggctg
      121 agaatttgtc ccctaatgac aacaaaagtt tcaactgggg aaaaagcact agaaaaaact
      181 aagtaagtaa agctattgct gtcaggagac atttctatta tgtaatccta aaagagtagt
      241 gttttgagta tagcctgttc ggtcatccta aacagtatta gtacagttgg gaaaaggggg
      301 gaggtgtgaa tgtttcaagg aggtctttga acgttttctt caaacgttca ttgcatctaa
      361 gatcccattt tttgtgtgcc tttattcgct ccagaatacc gatggactgc caacaaagga
      421 gggcctgtcc tcccaggaat tttctgcatt cctctctgga gtaggcattt ttctcagcta
      481 caaaggccct ttggcaaatt ccctctaatc attggattta ccctgggctc tgataggtgc
      541 cattcaggaa cttggtctgc tgtttgatgg ggctgaagca ttaatgggat cttttcatga
      601 taaacaaaac agagtaacag tactggagga atctcaaagc tgctcttgta gggcagtgag
      661 gctctttctc cctctgttct acattctccg ttttcctttc attttttcct catcccttga
      721 ttttatgaac gtacactttt ttttgtttct gggacctttt ctagtggcag atactgccag
      781 ctttcttcac cttaggaggc agtcggtttg ctcactgcca gtgctctgcc ccaggagata
      841 cagtaaaccc atgcagtttg cccagtttta gcagctcaat gtttttatca cgaacctcat
      901 tcagcatcag aggagaggct accatggatc ttgattcact tctccccccc caggggtttc
      961 attcccatca gtaggtttca ctcccatcag taactgg
//
LOCUS       KCLA01000796             906 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12817upu ultra-conserved element locus uce-2886,
            sequence.
ACCESSION   KCLA01000796
VERSION     KCLA01000796.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>906
                     /note="ultra-conserved element locus uce-2886"
BASE COUNT          270 a          182 c          155 g          299 t
ORIGIN      
        1 tttgcagatg cattgtggtg caactggatg gtattactaa tggctatttc tatgtgggga
       61 acacgctgaa catcatttgg acctacaatt tagaccttcc aggttgtgca taattattcc
      121 tttacctata tttatatatc tggctggaag tgtctttttc cagttgacca atataaactt
      181 tgaatgtccg ttcccttatt cccgcttctt ttgtagaaat gctctcatta aatctttact
      241 ccaggtgatt ctttaaactt atagcatgaa gggaaaggca atatttcaca gtggtgttat
      301 cacacttgtt ccttaaaatg tttgagtctg aaatattgtt cagcccccag gtgtagaaca
      361 tgaactcctg aggttgaaca gaatgattca cttgtttcac tatgaattca aagtggatat
      421 gaagcataaa tccccttttc cccctctgta atatagtagc catgaatcac aatgtcacgc
      481 tgagtcgatc ataatctaac actttacgcc tcagccaaca acttgatttg tcaagagaac
      541 aggcctgcaa gctgccaata gcattgattc ccattggaga agaaaggata attaagccct
      601 cagtgagcta atttcttctt tcttttgtaa aaataacatt tatttttatc tgtaagtaaa
      661 cagaaatgaa gaaatattac atatgtataa aatcactttc cctaaatcac tagtacgagg
      721 ctttgctcca tttccacccg gtacaattat tttatttcac catacattaa caccctgtgc
      781 tacatctcaa ttagggaaag tggagctaaa attaattaca ttcaatctgc atgctaactg
      841 gcctgcaaca gcatgtcacc attcctgggt acgagcattg ttagtttgat gatgagcatg
      901 aataat
//
LOCUS       KCLA01000797             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12832upu ultra-conserved element locus uce-3444,
            sequence.
ACCESSION   KCLA01000797
VERSION     KCLA01000797.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12832upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-3444"
BASE COUNT          252 a          115 c          133 g          262 t
ORIGIN      
        1 gatccctaga atgagttctg agtgacacac tcattataga agttcagctt ccttctacaa
       61 catgttgttt ttacgacaca aaagtgtgtc ataaaaatta acatttagtt ataacaagaa
      121 gatgttttta tttcacttaa catctgtagc agatgtgaaa tatgtaatta tttttgtaaa
      181 agacttcata actttcacga ttcttttgtt tggcacatct ttcttctatt gggcatttta
      241 gacaattgat aagcattatt cagtggcata tggtctgagt ctgacgtgct ttgaaaagag
      301 tacagagtac taataatgag gattctgtga aaatgggaaa accagcacaa cagatatgct
      361 ttgagaaagt atgggttttt agcatcttga aacaatatat cacactcaaa gggacagaat
      421 tgggctgcac aatctgttag ctcattcttg tccaatctgg tctcctcctt tcttttggag
      481 ccagcattgt catcagcttg ctgaattata ctctgactgg aatgtatttc aggcacaggg
      541 taatgtatct acttaaatgg aatcctatct ttctacaaaa gctttttaag tataataaat
      601 ttaaaatata aaaaagttct attagcttaa agtagatggt tcaacagttt acatatgtga
      661 gggaacaaag aaaattacta cttactagtt ttagaaaagt ctagcatgtt cagaaatatg
      721 aaaggtagga gtaaacttta ctttttataa taaatatttt gc
//
LOCUS       KCLA01000798             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12848upu ultra-conserved element locus uce-357,
            sequence.
ACCESSION   KCLA01000798
VERSION     KCLA01000798.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-357"
BASE COUNT          212 a           93 c           89 g          164 t
ORIGIN      
        1 tttcatgtgt gacacctcct tgcatttaac tcatggattc attgcaacaa gaaacaattt
       61 aaattaaaat attcacattt gcaagggaaa ataaatagtt aatggtttca gaattagtct
      121 tctttttcac acaattctat aaaaaattcc caatgaaaaa gctaatagac caatagcgag
      181 acatttacat atgcaaatat gtttccatga aagagttaaa gtgctttata atataaattt
      241 gctttcggtg ccaatataat tagattgtaa caagcaaacc cctgcaacat aacacagtga
      301 aaatttgaaa atttgattct gcctggcaaa caaccaagtc cctgcgtgtg cacaaacctg
      361 acattaataa gctacaagag attacatgat ttagaaaaga agcacttggt gttacaaaat
      421 caaataatag atctctaagc tataattagg agaattggga ttcaacaatg aagtcataat
      481 aatgtaattt agctgtaagt aacagagcca tggagtcaca ttaggaggtg tgatcacatc
      541 tttcagcaaa gctctgct
//
LOCUS       KCLA01000799             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12864upu ultra-conserved element locus uce-2344,
            sequence.
ACCESSION   KCLA01000799
VERSION     KCLA01000799.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12864upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-2344"
BASE COUNT          186 a          202 c          190 g          226 t
ORIGIN      
        1 ttaacctcat ctgtgttgca ttgaactttg aatgacaccc gcaagatgag agaaattgta
       61 ctggtccctc ttctccttcc cagcattgca gagtgtctca gctctgctga gcttttctga
      121 ttacattatg aggttgtcaa agctctgcct atatgctggc agtggctgga gtgggcagct
      181 gatgtatgcc tttatctcag ctcaagatgc agctttgcta agaaagtgca gcccaggtat
      241 cctccccagc ttctccacca ctgtcataat gaggcactgt cacacagaga gagctgcaaa
      301 aaccaccttc tcctcaaaaa gtcatcttct ccctcccttc caagatgcta cctgtgaggg
      361 tctggtgcca ttttgaagcc gaggttcccc ggggttaaaa gccagcatct taattcagag
      421 tgccaatgtt caattttgct ttctgccacc agactagatt gcaggccagc aagagagtct
      481 gggttagtgg cccactgggt cacctcccat ttgttttcct caattttgtg ttgtcataaa
      541 ttcattccag cccgttgtgg ttgatcagtt tatctccgcc ggggcaggga gcgctgcaag
      601 catgatatat ggcacagagc attgtagcca gcctctccat gaatcactcc agctgtttgg
      661 tgtcagcccc aaagcaaaca ggacccagcc gctgagcgtt gactacgatg agctcagtat
      721 gggaagagac atgacgtatg aatgtttatt taataattct ctaatatttc cagcagagtg
      781 tggctgtgcc ttctgggggg gtag
//
LOCUS       KCLA01000800             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12880upu ultra-conserved element locus uce-7279,
            sequence.
ACCESSION   KCLA01000800
VERSION     KCLA01000800.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12880upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-7279"
BASE COUNT          101 a          170 c          201 g          110 t
ORIGIN      
        1 catcaccccc ccagtcctgc acccccccac ccaacccttc cccagagcca gacggatgct
       61 ccagcaggga aagaaccact gggactgtgg gaaacaccga ggaccctctc aaagctccac
      121 tcggggccgg ctgagcccct gggggttggg gattgggggt ggcccccagt ttcggggcgg
      181 tttcggggtg tcgggtttgg ctgccggagc tggtggctcc gtctggctcc aggagcgcga
      241 acacacctcg ggctggttac tgtagaaacg gaattagcgc ggggagggaa cgcgatccca
      301 gagctaatta aggtaattac agcttcacac cagctgctca cgaggtccaa ggaccttctg
      361 taacttgtgg aggagatcag cctctcgggg gcactttgaa ctgcggctcc ccccgacacg
      421 gggggcactt gggctgggct gtgtcaccca ccaccgaggg tgacagcgag ccggggggga
      481 tacggagcct cggatgtgcc tctcaaatgt tctggtcccc tctcagcagt ggggtccagg
      541 gtggggttgg gggtccctgt ttggatgggg tttggtgctg gg
//
LOCUS       KCLA01000801             914 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12896upu ultra-conserved element locus uce-5564,
            sequence.
ACCESSION   KCLA01000801
VERSION     KCLA01000801.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12896upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>914
                     /note="ultra-conserved element locus uce-5564"
BASE COUNT          202 a          274 c          231 g          207 t
ORIGIN      
        1 gtccgtgcct tcccacgtgc tgctgcgggc tgcgttgcct ccctcccttt ggaagcttgc
       61 tgcaaactct ggcccgatcc cgctactgct gaagtgaatg ggagttttgc cattgacttc
      121 aaggagatga gaagcaggcc ctctgctagc aaatccagtc tttatagtcc tttccagata
      181 ctaaataaaa ctgtgcttgg aagcaatttt gatgccagca agctggccca gtttgccatg
      241 aaattcaaag atgcccaacg atgtgatgat tattaggaca aaaacacagt ctcctcttca
      301 cagtgcaatg tgtaatttcc tccccaataa aaacatcagc gtgccgtatg tgcaaacagt
      361 gttctgtctt tatgccatct cactgacaag aaactcccag ctgttgtaat ttgtcttatc
      421 cttctctctc ttgtagaacc agcctttgtt cccttttgca gtgccaggga cttgctgagc
      481 tccacctgat gtgatttgtc caggcattaa taatgcatct tcaagatgca agatgcatga
      541 atccttccag cagcagccct gccggcagac cgctgcacag tgcgagatgg gagagcaggg
      601 cggcagccct ggcacccaca cgctccacgg gtcacctggc tgccgaggga agggcaccca
      661 catgttacgg gggataactg catcctcgcc ccgaggacag gctgtgggta acaggtctca
      721 caggccctgc tcctccagca ggaaggtctt tacccaccac accaggaacc ccaggctgac
      781 agtgactcga ggagacctgg caagcgcccc agcggtgcct ccctggggag tgctgtccaa
      841 cccatcacaa ggccgtgcct gcttgggccc caccacgagg gcatcacccg cttcgcgggc
      901 ggcggctggg ccgc
//
LOCUS       KCLA01000802             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12927upu ultra-conserved element locus uce-3025,
            sequence.
ACCESSION   KCLA01000802
VERSION     KCLA01000802.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12927upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-3025"
BASE COUNT          230 a          143 c          170 g          161 t
ORIGIN      
        1 aaaaacaatt aaaaaaaaag tgctaaatca gacagattac aacaaagaga ttctgttttg
       61 aagatggtct agcattaaga tactgctatt aaagtaccta agaaattagt acaaaaacca
      121 tagtagttgt gaataaagga agagagtttg gcccactgca caggtttggg cacaaaagtg
      181 cttgctaagc tatctatttc acacatgcaa cgacagaagg ttcgatattc attcgatcga
      241 tgactgaaaa gacacaatgg caaaatcgga cggacttctt ttcaaataca gatctccgat
      301 gtccccctac agtctgcagt cgcacggctg gtggtgtggc acagacggag caagggttac
      361 atcaaggctg ttctctggac cgtggaaaca gtctagacca atgacctgca gcatcgtgcc
      421 ctttgaagaa gaagcaagtt cagtcacgac caagaaaaat caaggcatac cccttttaac
      481 aatagggagc agctcgtggc tgcaaagagg taagcagggg taagcaaaag aggcatctgc
      541 ttccatggtt acaggccaag catgggaacc ttgcttttga agagggacgg ttctcaggct
      601 ccctcgcagg ctatgtcatg cattataagc aatggcaggt tgagctgaaa tccgccgagt
      661 tatttcaggg taaaatgata cgtgagcaca tggctgttag caaa
//
LOCUS       KCLA01000803             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12943upu ultra-conserved element locus uce-625,
            sequence.
ACCESSION   KCLA01000803
VERSION     KCLA01000803.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12943upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-625"
BASE COUNT          249 a          155 c          161 g          268 t
ORIGIN      
        1 aaaacgtaat ttgatgctac caaaccagga taatggaata cgttttaaat gatctaaatc
       61 aagcataaac aatagagcag tttgaaaggt atggtctaca aaaaatgcca cagtctgtgc
      121 aagaatactt cctctgtttg atctgtcact agacttctca aaacgtgaca cttcttgaac
      181 ataatatact ttgatgataa actagattaa ctttcccagt acaaatgaaa gggtacctgt
      241 tgccacaatg cctacattcc ttgttggctg tcttgtagct gtcatcactt caatgcagtc
      301 tgtgcccaac atgctggaat ataatgaata tgtcaggaat tggaggtcag ccatcaaagt
      361 acatgaaaac ttggcttgca tacagtgtca gcacggagac ctcgcctatc atctcgtgca
      421 aaggatttct gcaccacttg atttgtttgc acatggtttg tttctgttgg atggaacaca
      481 tttactgaga ggctttttga cagcctgttc aaacattttc aatttggaaa atggtgcttc
      541 ctgtttcagg ctttgtatct gatgggtggt gcgaaatgtc accatagctg atcatgcttt
      601 gtgtttactg ctattatttg agcatgaaaa gagacaagat gagcatggag gtattctgac
      661 tagagaaaag gatatagcag ctatacagag tatatataaa atcctatccc ttttatgtac
      721 atttaataga ataaagaact ttttttttct ttatccagcc ctgctgaagt tgacagatct
      781 ctggtagctt cacaattcat ttgtcttaaa gatgtcagcc tcttattcat gat
//
LOCUS       KCLA01000804             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12959upu ultra-conserved element locus uce-6714,
            sequence.
ACCESSION   KCLA01000804
VERSION     KCLA01000804.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12959upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-6714"
BASE COUNT          268 a          141 c          164 g          284 t
ORIGIN      
        1 ttctgggttt tccaaatcac agttgttgtt attgtagttg tcgaagagaa tctgttgact
       61 attacatgtg ttatgctgta gtctcccaaa tcagcattgc cctccttaag gtcaggggaa
      121 tgtatcttaa aacattcata tatttgaaaa atatgtattg ttattttaat aggcactgtg
      181 gatagtttaa tttgtgtctg tattaaatta aacatatggt gaacagggta taatagattt
      241 tctataattt agctgccaat gtggcaacag aagccagtta ctctcaccag cagacttgtc
      301 agtggtttgt ttactagctt atttgaatta aaataaagct tcgcttctgc tgactgcaca
      361 tcattatcta tgagaccata atcctgctag caaatcctat atcttccaga actggctctt
      421 ttgtttggga ttactgagag cttagcctat aacaaagagg aataaggcat ccctctcatc
      481 ctcgtaatta agtgtgggga gtaatttaga aacaaaccca gaaagatgta caatttggag
      541 ttctgcttct atacaggatt gaggaacaga agaggccaaa cactgattat gttagcacaa
      601 tatttaaact attaaactac tgtataacag aaatcgagct tttaaaaaga aatggcaact
      661 gtcaagaaag catgaagttg ctttacacta ggaacattat ttgcttatct aaaggtatgc
      721 tggaaaattt gggtggagct tgaagtctga agagtatgtt aaaactgagt tttctacatg
      781 cacatgatgt acaggtcact gttgtaacac tgatgtcatc caattctctt tccatgcaaa
      841 cagttatgtt atattct
//
LOCUS       KCLA01000805             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12974upu ultra-conserved element locus uce-4930,
            sequence.
ACCESSION   KCLA01000805
VERSION     KCLA01000805.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12974upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-4930"
BASE COUNT          100 a           66 c           94 g           94 t
ORIGIN      
        1 gggcacagga gatgcagggc agggggccag ccaggaggtg caggagccag cgactggcag
       61 agaagatgaa tggttttaat cataccgctt acagggcagc atctgaagtt tcgtgtaagt
      121 tatgatagcg acagtttgca cgaaaattgt atttccaggc ttcattgact ggcttaatga
      181 gaatctttac gtgtcagata ttaaattaag aaattaaaga gctgtttcag tgtgtataga
      241 ctccttccct cgcactgagc tgcttcttcc agatcaatca gaaatgtgcc tctagaaaag
      301 atgggagaag cctttgattt tctgtcactg gggaagtgaa tctaacacac gttg
//
LOCUS       KCLA01000806             208 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 12988upu ultra-conserved element locus uce-2127,
            sequence.
ACCESSION   KCLA01000806
VERSION     KCLA01000806.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 208)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 208)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..208
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="12988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>208
                     /note="ultra-conserved element locus uce-2127"
BASE COUNT           54 a           36 c           58 g           60 t
ORIGIN      
        1 tgggatggga ggccatttgc tattctgttt aaggcaggct ggattgtctt attttggagc
       61 cagcttggtg gggggttttc tttgctgctg cttcagagct ctgagcttca aaggctgaaa
      121 ttaatggtga acaaaattgt gcagctctga ccatcccatg cggggcaaac ccatcgaggg
      181 ttatcattaa gtaaagaaat aaagaaaa
//
LOCUS       KCLA01000807             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13004upu ultra-conserved element locus uce-6606,
            sequence.
ACCESSION   KCLA01000807
VERSION     KCLA01000807.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13004upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-6606"
BASE COUNT          189 a          317 c          185 g          186 t
ORIGIN      
        1 aggcaaccgc tgattttgca aatgcagcag cgcacaatgg cagctcaagc gttcctcagc
       61 gcaagaaaca gattcttttc tttttatgct cactccattt cagaggcact tttctccctg
      121 tctgttgggg tgtgtgtagg cattgattcc caatcttccc ctcccccaaa gccaaattaa
      181 tacatctcag ctcttgcaaa actggtacca acgaacggat ccagccctca cggttcaacc
      241 cctcgctctc tcacacaaac acgcacacac acacacattt tgactttcta aacagacgaa
      301 ggggtcaggt ctccaccccc ttccccccgc ggggaatagt cgctcccacc gatcccaagc
      361 tccgcactca cctatctgga tattgttggg gaaattggcc cctaacaccg cccctaggaa
      421 actggtgcag aagaaggcaa aaatgtgctg catattccct tttgcattgg cgaaaaagaa
      481 gcccagctcc aagcatagat ttgatttttc ccccgctctg ctctctttag ctgccgcctc
      541 ctcccctccg ctgcgccctc ggggctgcgc gaacccctcg ctcggaaccc gccgctcgga
      601 gtgatgttcg gcagcgcctg gcagcgggat taactgagcc ccgggaggaa gaaaccgagc
      661 ccgctcctca tccacagccc tcccccgtca cacacaacgc gcacgcacac gcacacacca
      721 aggcgcttcc acccagctca ttccccttct cccagttgga gctcaacagc tggggactgc
      781 atccgcaccc cgccccggct cttcccccac cttcggggtc ctggctgggg gctctaagga
      841 caattcccac ctgcccctaa atacgcggct ttctccc
//
LOCUS       KCLA01000808             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13020upu ultra-conserved element locus uce-2734,
            sequence.
ACCESSION   KCLA01000808
VERSION     KCLA01000808.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13020upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-2734"
BASE COUNT          200 a          193 c          158 g          238 t
ORIGIN      
        1 tctttaattc tgtatgaaat caacacatgc tctcatacag gtattgccag ctgacttcag
       61 aaggaaaagg aatatccatg ccatttgctt ctgtagcttg atcatataaa cagggatatt
      121 atttcacagc taaaaaaaac ccaaaagacc caccaaacca caaattaaaa atcaatgcaa
      181 ttttccattc tttctcatga gaggcaaaaa ggtcttggcc acatccccag caagctttgc
      241 cccctgtaag gcatcgcagc ctctccttcc ttccctccat ccagaggcaa aaattaatat
      301 ctcataattg accatcgtgt gccctgtaac tctgtttatt cttactgcat gttttagaca
      361 gatggtaagt attggcactt tttatgatgc tgataaacaa tgtcaggctg ctaggtgaat
      421 gtggtgttgg ggtgatttct cacctccctg cagcctccta ctgtgggata aggagctctg
      481 gccacctttt gcagctcagg ttcccctccc tgtgttgttg cccctttcca gtccaaaggg
      541 ataaaagcca catcaggcca ttgctcttag aaaatcgagc acaagtgcag gtgtattgcc
      601 ttgcttctga tccttgtttc ccttgcaaat gatgctgctc tcttggatcc ttttcttctg
      661 tagcagtgtt ggcgtgctgg ttcctgtcct cataaaatgc tgctattccc aaggactgga
      721 gtggcagttg gtgtgtggta gccaggagac atatttggct atttcttgaa aaatccttag
      781 gcacacacc
//
LOCUS       KCLA01000809            1112 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13035upu ultra-conserved element locus uce-1754,
            sequence.
ACCESSION   KCLA01000809
VERSION     KCLA01000809.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13035upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1112
                     /note="ultra-conserved element locus uce-1754"
BASE COUNT          370 a          232 c          175 g          335 t
ORIGIN      
        1 caggcccaag ctcttttctt tcatcaaaca ccttccctca ggcatcaaac tgttctttcc
       61 tcaaaaacat agtgacacac ccaataatca cagacatacc tggttaatat gtatcttaca
      121 caatttactt gaatggttac ttttacataa acaatttaca ttaagccaat aaaacaaaat
      181 tcataaaaga aggaaaaaag agaggctttc aggtattctt agctaatgaa aataacaacc
      241 ttctcccaat acacttgtat tttgaccagg tccttcctgc catacaactt gtatttcatt
      301 acacttacta ggagaggcaa aagggtaccc catttttatt tcctgaaaca ctggtctcag
      361 atatgtttca ggtatgatac agtagagctg aaaagcagca gaagaaagtc ttctttgctg
      421 tgctactata cacatcagac atctctaatt agacagcaac aaaattttat taataggctg
      481 gacattatgg aatgagcttg ttataaatgg gccctgtcaa agccttattc agctaccaaa
      541 tgagtattct cagttcactg ctcgcatctg aagcatcacc gctggttcca gataacaaat
      601 gattgctatt aaccgtattg ttagtaatga tggctgaaaa caaacaaaaa cccataaata
      661 acagtctaca gaaaaattaa cccataaact tgatagatat ccagctgaga aataataaat
      721 gacagtttgg atcctgctgc gagaagctag tgggttttgt tttcttctct gtcattaaca
      781 cattttctgt gctaaaaatt agattctgat atataattat caacgcttcc agatattaat
      841 tctgctatcg ttccctctgt ttctgtgctg gttggatgca atgttattca cagattactc
      901 tgagaaaaca catcaaacac ttaacagagc aggtcaaagt gacaagcagc ttttgctgac
      961 aacaccaacc tgcacagcct tttttactaa ggacgcaaaa caaatttctc atattaatta
     1021 actctggttt ctttacagct agaacaaatc ttcactatgt aatgtgagct aagcgtattc
     1081 ccagctgtcc taatacaggc tgtattgagg ag
//
LOCUS       KCLA01000810             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13051upu ultra-conserved element locus uce-959,
            sequence.
ACCESSION   KCLA01000810
VERSION     KCLA01000810.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13051upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-959"
BASE COUNT          179 a          110 c          100 g          175 t
ORIGIN      
        1 tgatcaaaga tccaagagtg cagtgctcca ccttaaatcc ctcccaccta ttaggccccc
       61 ctttagacaa gacagagaaa caaatttctc acacatcaat gatgcctcca taatcaattt
      121 caaatagcct cttgcatagg gatgcaaatc ttagctttct cttaataaag cattttagaa
      181 gatggatgta ctgatctgat attattaaac gaaaagtggt ctctttttaa tctagagatg
      241 caggggcgtt agtaacagac tgaatcaaag gcctggtctc tttctcttcc taattatcaa
      301 tagtgtttta taatcttatt aatattgata catagtatac tgaagatctg ttaacgtata
      361 atgtatgtgg aggataatta acgagatcca agtcagatca atcgcctatt tgacagcaaa
      421 cggtgtgtgg cttataaatt atacatatgc taggtatggc tagaaatgtt taaagtttca
      481 gtccaatcct tccagtacag cactgggaaa actgatgaac ttaaaggcac agtcccttgc
      541 ctgttaggtt tatactgtac actc
//
LOCUS       KCLA01000811             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13066upu ultra-conserved element locus uce-1912,
            sequence.
ACCESSION   KCLA01000811
VERSION     KCLA01000811.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13066upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-1912"
BASE COUNT          228 a          118 c          156 g          177 t
ORIGIN      
        1 ttttaagaaa tagcatgatc tcaggagaac atctttaact aagagagcct cagtgcgcag
       61 gctgcagtta caaataattc tgcacaacag acagacgaat tgtgctgatt gtctgtattt
      121 aaaaaagaaa aagcctggcc tagaagccta cagtaaatca tggaagtgat ctcaagtgaa
      181 cagagataga tttctggaat acggtgtgca atgaaaccac tgacctctta tacaagggtt
      241 catgtctttt tctacagaaa cagatgggta atagcataat gctgaaatca tgctctacat
      301 aatatggacc tagtgattgc agacctgatt gcttgccata tggttgctga ggggttgaag
      361 agaaaatggg atgatatgca aacccttaaa agcaacattt ttattgaatg gccattacat
      421 taaaacccaa actctgcaaa tgaaggaaat aactgtggtg agtaatgatg aaataaccaa
      481 acaataaaag gaggaacaca atggcctgta tttgttttca atatgcaaaa taatcacatt
      541 ttttttgtca tcttgcctcg tgttacaagc attcagtgga aagttggtgg gacattgctg
      601 cctgcggggc acgaatacag gatagcggag cgttgcagcg ttcacggggg cagacagcga
      661 agggaaataa tcacgtgtc
//
LOCUS       KCLA01000812             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13082upu ultra-conserved element locus uce-6263,
            sequence.
ACCESSION   KCLA01000812
VERSION     KCLA01000812.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13082upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6263"
BASE COUNT          187 a           90 c           91 g          161 t
ORIGIN      
        1 ttttgacaaa gtcttgatta ttattttatc aagaaagtag gtagatttta aaggttgccc
       61 agatggttta tatattacta taataattgt gttcatagaa actttcacaa agaaaataat
      121 taatcacaaa catactgtga tccccctaaa gcagcgactg ttttaagttg aaatcccata
      181 atggctatga cctctaaccc tgatgtaact gtttctatcc tggctactaa agtggctgct
      241 catgaaaggc catcaaatgc agaagtaaat gcaaaggtta acaaagttag tggaccaaac
      301 aaacttgata ctgagaatga actttcacat gtagcaagaa aataaacacc actctcccag
      361 actgagctac ataggaggtt tgagatgcca aaatattaaa tattattaag cgcataatct
      421 caatttttca gataagtgtt tactctgggg gttgccatcc tttcatattg gtaaaaattc
      481 ttcactcaga aggaaaaaag ttcaaatgcc ggtatgtttt cagtaagat
//
LOCUS       KCLA01000813             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13110upu ultra-conserved element locus uce-3439,
            sequence.
ACCESSION   KCLA01000813
VERSION     KCLA01000813.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13110upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-3439"
BASE COUNT          211 a          143 c          107 g          234 t
ORIGIN      
        1 aaacacccaa gtctctgtga cctcacttac ctttatatac ctgctaccat tggcaccttt
       61 gaaaccctgt tcccctcccc ccttaacaga atggaatgcc tctgatctca tttccttcat
      121 ataattgctg agcacacata cagtttaata tatgaacttg tacccttcat attgtcagaa
      181 gaactatcag aatacttata ctaaatcctt gtacatttta ccttatttta ctaaagaatt
      241 acgtatctgt cccattcact tataaaacat gccttttaat gatgtacttt tagtaaagtc
      301 taattaaaat tcaatgcgta aaagtgtgca agggttgata acccacagaa ctcagcagac
      361 cctagttaac attctaatgc atcctccatt tggagagaga cagtaagact tttccacctc
      421 ggtggcagac attaatgata cttgcaaata tgactaatgt cttcattggt gaaaaattaa
      481 tgcaccacaa taatttttct acctggggtt aatgaacatg tcagatgctg aaaattagtt
      541 gtttgaaagt aaattactat aatctatatt tagaagactc tgctcttgga aaaatctatg
      601 atgtgtttga tgtcttctgc ttacttttgc aacgaatttt gctgatgtct agtgaggcca
      661 cacttgctga cttttctttt ggtgcaaggg aacat
//
LOCUS       KCLA01000814             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13125upu ultra-conserved element locus uce-5860,
            sequence.
ACCESSION   KCLA01000814
VERSION     KCLA01000814.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13125upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-5860"
BASE COUNT          326 a          190 c          183 g          244 t
ORIGIN      
        1 gaatgcagca actggttgat gcctttcaat tggcaggtga cgcagcatgc gacacaggga
       61 gccaatctca ccataaaagc agcaaaaaga aacggttttg ctttagaatg aacctagcca
      121 atattttaac ccacatttct gaaaatgcag cattttcaga aatagtacag aaaagcagag
      181 tatataacga acacacacac tggtgccctg tatctttaac tgctcatctc ttgcagcaaa
      241 catagtagca aaaaaaaact gccaatgacc tggaatttgc agaatagcaa aaatgggcaa
      301 gaaagcacag actcaagcat gccattcatg aagcatttgc agagtcacaa aatgtcatac
      361 ggcacagatg agccacgcag cagctgacct gaaaggtgga attagttggc aagtgctgca
      421 gtaattgtgc gattgtgtaa tttcgtatac tagccaactt agcctgatgt ctccttaatc
      481 gaatgagaag caatgttagc tcttcaggct gcaggtattt agacacattg taaagaggaa
      541 attagcagtc ttcagggaga gtaactgtaa ttacattttt caccacagtg cacagaaagc
      601 agctacttga catgattaag caattatttc attaactctg catttggtca aataaacata
      661 atagaagttg aatcctgtaa taacagacat ctcactcctg ttcacattcc agttaacagc
      721 aaattcctac aggttctact gggagttagt taaattctca ttcaaattat ctatgtttta
      781 actagtaaaa atacaactag tatggaagaa gcaggatttt aaaacttaca atactataat
      841 gacacaaaag tgaaagtaac tgctctcaac ttaccgactt gccatgcaag ctgggcgcac
      901 tcacagtatg tgtcatatag cccatagtag gcatagagcg tcg
//
LOCUS       KCLA01000815             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13140upu ultra-conserved element locus uce-5974,
            sequence.
ACCESSION   KCLA01000815
VERSION     KCLA01000815.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-5974"
BASE COUNT          204 a          123 c          130 g          187 t
ORIGIN      
        1 tattacacag caatgaacaa gctgcatttc catacagttt taagttttta aattaaggtc
       61 ctgctgattt aatgcctttt ccaaatgtat acgcttaatt tcctgtacaa tgtcattagc
      121 agcacaatca cacattttct attcatctaa tcaggaagcc ctttgttaac aaagatcaaa
      181 actgtggcat taggtttgta ctatcccggg tgtttggaag gtgttgagat tgctctggat
      241 caactacagg aactagatat attttttttt ccactgcaaa ggctaagaca caacaataag
      301 gggttacaga tacatcacgt gaagatccta ttatggtgtg gcacacagca ctattgttat
      361 ataatatggc aaatgaaaac ttatgcagca ttagttatca caccacacag agtagttttg
      421 gcccagtgac accagtagga aaaatgatgt ccttgttcag ctcatcatat gggcacctta
      481 aatctaggtg aggacaaatg gggaggtgat gtgcatgtac aggcagggaa cttattgctt
      541 gacacggatc aacagagcac ttaggaaacc agtgcagtgg gaaatcaata tgactcaggg
      601 ccagctctta ctttgtgctc ttttgccaat gccaaaaaaa aaaa
//
LOCUS       KCLA01000816            1119 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13155upu ultra-conserved element locus uce-6703,
            sequence.
ACCESSION   KCLA01000816
VERSION     KCLA01000816.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1119)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1119
                     /note="ultra-conserved element locus uce-6703"
BASE COUNT          380 a          209 c          172 g          358 t
ORIGIN      
        1 agacaaaatg cattgcatca gattacgtga cacaccacat tacatcaaaa cactgccttt
       61 ggtttatgtt gcttttaatg tgaacggtta caggatatga ctcaggactt gtgttgccct
      121 ataataagat ggaatgcaac acaatagata acccaaatac acacttagat gatgctgata
      181 ctggttggta tcttcctcaa acttcaagca gtttcctgca aagctaacat ccacaggaga
      241 gaggaataca caggatagaa tgaatatcag tccatgacat gtaacttttg ggtaatgttt
      301 attaaacatt atctttgttt caaataagta cacaggaaga acatccaaat tactcagatg
      361 cttcaaggat aatttgtgtg ttatagttta acaatgtatt ttatcattat gtcttggtct
      421 aaatttcctt caaatattaa atagatactg gctatagtag ttagctgaat tgtttacagg
      481 atcaaaatca aactaaatgt tctgaaaatt ttcagcaaga gattccagtt aatgaaagca
      541 ccatttgtga tgtgctaaaa catgtataca cataggtatt gccccattta tcagacatga
      601 gagctaatta cctcatccac tgctatattt cttccatcct ctgcatttca attcccaata
      661 ttaacacata gttggtcaag ctgaccatcg aatagcctac atgagcatga atgcattaaa
      721 taatttaatg ttagaagagt ttattaaact gccacattct aatcagcatg cgtacctgtc
      781 ttcattaatc ttgcactggt ccatggtgtg tctctacagc caacacagag tgtgctaatg
      841 ttaataggag ctcttaacaa acaggatcag ttaatcaagg aaaatctgcg attagccaca
      901 tgaccatgca tactgaaaac taattacaat cagatttaac ctcttcatta ctgtattcat
      961 ccaactattt ttcttaccac ttgtgatacc aaagtgttcc aaattgtaac attattatac
     1021 tcatttgaac agcaaatact taaatcaaat cttattaaga agggagaatt tctttttact
     1081 gtgttttcaa tgtataaagt tatacctacc aagaaacat
//
LOCUS       KCLA01000817            1126 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13171upu ultra-conserved element locus uce-6528,
            sequence.
ACCESSION   KCLA01000817
VERSION     KCLA01000817.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13171upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1126
                     /note="ultra-conserved element locus uce-6528"
BASE COUNT          315 a          228 c          255 g          328 t
ORIGIN      
        1 cttgtccggt tttcagtggg ctgtcgatgt ttaaagtggc cttcacgctt cttagcgttc
       61 ggttgaacta aacaggtgaa agttgtgtcc caacttggaa gaagaaagcc aaatgatcaa
      121 atacagctta aattcattct gggccagcta gaaaacagcc atttactctc aaaagaagag
      181 catttttact gcctccagat aatcattttt taaaaattta atgaaaagca aggtgttctt
      241 tctcctccgt agggacggaa ttcacgctgg ttgagctgca gctcgaagcg gcactctgac
      301 agcactgctc tgtaggtaga taaggaagtc aaattgcaaa gtgggtttta gaaaggaaag
      361 aaaaaagagc aactctgtgc agtggcgagc tttgctgttt gttccccatc tccagataac
      421 agttgactca aattattgtg atgtgttgat tgattacagc cgttaagttt cttagtaatc
      481 agtttcatca cttattcaca attcacgctt gcacctttga tttctcctcc acaacagggt
      541 gatgtgggtt gtcgttgact aatgaagaac agaattggtt tcggcgtgag acaaacggaa
      601 tgccgacacc aatcccaaaa tgcattaatc tttaataatc cacatctgca tgtttataaa
      661 tgatataacc aggggttgct aacatagata ctccctcttc caaacagaag ctcacataga
      721 aggtggcgtg tgcaaacggc acgagaggca cgtggccatg cgtggcgcct gtgaccttgt
      781 ggagggagct tgccagacga aacttcttag ttgattaaaa atacatgaag aattgttgcc
      841 acttcttgct ggtcttcaga acttgtcatt ttggggcaag ataaaatatg gtatgataga
      901 tcttgtctgt aggcagatca gacccaccaa acggtttttg ggagtgggtc tgcctcaaga
      961 tgcttctatt ctttgtgcat tcagctcgct ctttcctccc ctgtccctga gagctgtaga
     1021 gatcggagct gcataatgtg caatgtggat aagaaacagc aaattgcgtg tcttcacact
     1081 gcaaatatta taaatggaag ttgatctctg gttttgttca aactca
//
LOCUS       KCLA01000818             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13187upu ultra-conserved element locus uce-3200,
            sequence.
ACCESSION   KCLA01000818
VERSION     KCLA01000818.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-3200"
BASE COUNT          181 a          102 c          101 g          180 t
ORIGIN      
        1 ctgaagatat atttctcact agcatgtatt tttcagttta ttcttccaag tctttcaaag
       61 aatttttgaa aagataataa tgatccattt tacttatcac aagctttgaa ctgaaggctt
      121 ttttcctaag tatatagtta gagcattaag agcagtatgg gtagagcagc caatcagagt
      181 aatgagtctc cactgcttga gaaagcaaga ttaatctaaa tcaaatactt tccactatag
      241 caattttaac taattccctc atgaaagtat aagagatatg tgaaacccct acagtcagca
      301 tgaacctcct ggtagggcta gacaggtaat accttttaag ctcgttaatg tcttatcctg
      361 ctggtttcta caactgactc aaagaatagc tgagtacttc tcaacctgtc attacagagg
      421 aaagcaacct tcagcataga aagggcaacg ctgtgtttta tgtataatgg tttgataata
      481 ctggtatggc tagtgctgtc tggactgaca taattaatga ccttaggttc cccaatgcat
      541 ttgtaatatg tagacagaaa tact
//
LOCUS       KCLA01000819             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13202upu ultra-conserved element locus uce-2222,
            sequence.
ACCESSION   KCLA01000819
VERSION     KCLA01000819.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-2222"
BASE COUNT          265 a          165 c          157 g          225 t
ORIGIN      
        1 aagtggcaat aaactcaagt agaaagtgca cctttgcttg tcatactgta gaaacgtaat
       61 tgaaaaagga ccagtaaatc ttgcttctgc atggaagaaa aaagctgagt gccctccact
      121 gtcaaatcaa tgagcatgtg agcatgctct ccacctttca gaatggcccc tcttcattac
      181 aaaactgttt aacagcaaag gtaacgtgac atctcttatg caacatatat tttacacata
      241 gaaatacata cacacataca aacaaaaagt gttttttggt tttgttttgg ttttttacct
      301 aaatgcaaac tggatgagga tccatgtgat gaaagtgatg gcggtggcgt aagtgaatgt
      361 cctggcgttt ggcttggcag aggcatgcct attggacttg gagaggagga aaatcccaga
      421 ctattgtaaa atggctgccc tatgggtgct aggctgctac tagatctttt gtacaagtca
      481 gagctagtag atagagaatc tctccttgtg gcactactac ttgcagaact gccaactgaa
      541 gaagaaataa aaagacccta attacacagt gtcaactgaa taaaacctat cccaaactac
      601 agctgggcaa caacagatgc gatcacatta attacagcaa tcgttatgac aaagacaatt
      661 actgtgataa ccacacatgc ttttaagtaa atctaggttg gtataaatat accactaata
      721 cgtaatttca ccaatgccca tgtctttcaa cattacattc tagacttctc acagcaatac
      781 tctgtttaaa ctgcctggct tcaggctttg ag
//
LOCUS       KCLA01000820            1038 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13217upu ultra-conserved element locus uce-2070,
            sequence.
ACCESSION   KCLA01000820
VERSION     KCLA01000820.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1038
                     /note="ultra-conserved element locus uce-2070"
BASE COUNT          303 a          230 c          170 g          335 t
ORIGIN      
        1 catggcagac tttgatgcaa ttacagcccg gctccacatc ttaatttgca atattactgt
       61 agtgatattg gagacaaatg ttgaattcac ggaacctcaa accctgaacg caaacagcag
      121 ccttcgatat tttttcatca atttcttagt tcataaaaat caatttttgt caagttttta
      181 cactgtacat aaaagactgt ggcatcaatt agccttaatt cttcttcttt ttcttttttg
      241 gaaacctctt tgtaggaaaa tctcatattt cagcaatttg cattatccac acaatctgct
      301 ttgaagttct aagttatggt aagaaaagga tccacttatc tgcacataaa aaatgttcaa
      361 agcttataaa ttccctgaaa cagatgtaca ttatcattgg atttgccttt ctctctttgc
      421 tgttgcatgg ctaatagagt ttcatgtgcc ccctcacatc ctccccattt agcatctttt
      481 ctctacagaa gcatgcaccc tactgtgcca atccacactt caaagatttc tgtctatcta
      541 ttagaaacaa agcacaaagt gagaacatat ggcccctttt aaatttccca catttaagtc
      601 aatatcgttt cttttctcct ttggcaaaga aacataataa ggtttatctt ctcccttcct
      661 aaatctgctg cctctctcaa actgcttgtg ccaattcagc agttactttg cagtatcaga
      721 cttggcagca catgtgaaaa caaaatctct aattttttaa attgcttttt ttcttcagat
      781 caagaagatg catttaaacg acgaaaaagg acaaaatgta actgcacact ttcagataag
      841 tggattttac acccatgaaa gggcacagca caaaatgagc tcttgttcga cttttcctgg
      901 tgacatcttt ccaaatggct cctatcacta agggggatgg aagagcattt tgcaacctgg
      961 gtgtgagcat ctgcttgtcc tgcatccctg agcatctgca gaaacccagc aagctggtgc
     1021 tgaggggagt gttgaagc
//
LOCUS       KCLA01000821            1126 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13232upu ultra-conserved element locus uce-290,
            sequence.
ACCESSION   KCLA01000821
VERSION     KCLA01000821.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13232upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1126
                     /note="ultra-conserved element locus uce-290"
BASE COUNT          311 a          188 c          261 g          366 t
ORIGIN      
        1 atgaaatgtc atttgtttgc taggctctgg aagatcaagt gggtaaaaaa gatttcctgc
       61 agcttaatcg agatttagtc actctgatca atcaaaaaat cccagtgtct tcagtaaagg
      121 gatgaattta aaaatctagc tgggtgaagt gagcaaatta ggaatggaaa aaaccaaagc
      181 tgcagtgggt gaaggtgata gtcctgagac caccactgct ggctttgttg tagctgttgg
      241 ccttgagggc atgacagatc ctttactctg cttgatgtag gttaaagaat gaagaaggtg
      301 cctcttctaa gacatggggc tcccttgcta acctttttaa ttattagtta aatgaagatt
      361 aaagttatgg agttggagag tatttggctg gtttataatt tagcagttca ggctgaagtt
      421 tcctttatgt tctttctgtt tttatgccta gaagatggac atttgacagg ccacaataga
      481 ctgctccttt cccaggtatc tcctgcttgt ttcctttatc tgtgaatagg aaatggctta
      541 aaggcacctg tgttatgaag gtcccagggg cagctgcctg actagtgaat gcctgattat
      601 gtgttaacat gctttgtcag atattggcag aatctgttct cttcttttgc cttttcagca
      661 agggtaccat tgacagactg gctacccatt tatagaaatg ttgtccatca aactgtgagg
      721 aaggacaatg gtgtttttct gtggccagtg actgtgggaa acttttcttt ggctattcag
      781 gcaatttttg tagcttgctc tgaagaggag agactgatga gtgcaaaaag tacaattaag
      841 caaagccaga cttcaattga aggctgtagt gtagtctgct gttctcattt ttttatttgg
      901 aaaaaaaatc tatgggtttt cacgttgctg tgtggcattc agcggggggc tattacaatc
      961 ctaaattttt tttctagacc acctaattct aagtaaaaat taaatgtaat gagagccact
     1021 tggagttctg aatattttaa agcataattc ccacagaagg gattcgacct aaactgtgga
     1081 gagcatcagt tggctaatta tagctgcatt ttatattaca gcaggt
//
LOCUS       KCLA01000822             643 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13247upu ultra-conserved element locus uce-6499,
            sequence.
ACCESSION   KCLA01000822
VERSION     KCLA01000822.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 643)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..643
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>643
                     /note="ultra-conserved element locus uce-6499"
BASE COUNT          192 a          144 c          118 g          189 t
ORIGIN      
        1 ttgaccttgc agctacgatt tctaataaag tagttagtca gtgagatctt atttttctag
       61 cactgccttc cccgtgtggc ggctgctcaa ctcgctaccc tgccgcatcc gttattttaa
      121 ctaaaacctc gctttaatgt actcagcagc acctagaaca agaagcacac atactctata
      181 tccgtcattt ccatgtcgat gaggagaaaa caaagggata attataaact gcatctcata
      241 ttgttattct tacactcgac atgtgcatct attctttttt tccacagtga agtgattctg
      301 ctgtggagat agcaccaggt gcatgggggt gacctcacac acacaccaaa tcgggagctg
      361 acatccatca cactttgaaa ttttggattt catcatttcc tgatctttct aaagggatca
      421 cagcacctgg ccctcacagc tgtagttcat ttagaaagca atttaaaaac cgagaaaaaa
      481 gcaaatgaca tcttgctgcc tcagccttgt cattaagtat agcagaatgg ccttcattta
      541 tgagacacat ggctaagaat taatatctct cagtgctttc tcaagttgag attacaaaag
      601 gtttgaaaga ccactaaata attagtagta tggctgagac aag
//
LOCUS       KCLA01000823             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13262upu ultra-conserved element locus uce-2252,
            sequence.
ACCESSION   KCLA01000823
VERSION     KCLA01000823.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-2252"
BASE COUNT          248 a          194 c          161 g          323 t
ORIGIN      
        1 tccctcttcc aaaaaaaagt gctttcaaac aagattttgg taattcaaaa ttctcaaccg
       61 aggctgctta gaagcttaaa aaaacacttc aaaaattgtg ttgtaacgtt ttgaagatga
      121 tgctgtgctg agtgtaactt atacctgaac cacaaagaaa ttgaaaaaaa tgaaagaaga
      181 aaaaaaaaaa gttggtgcct ttttaacaat attttctctt ttccttctct tcccatcacc
      241 tttttgcttt tatttcatgt gtttggttgt ggctattcct tacgttctcc tcctcatccc
      301 acctctgcct atccacatcc accatttcat ttcacctgta catccttagc atggcaaggc
      361 actgacctga tgcataatca cgtcttggct gatgatgacc aatcaagtct agactccttg
      421 ggtcgtcgca gtagtctttc tcgtttggag ccttcagacc tctcagaaga ctctgactat
      481 gacagtatat ggacagccca tagttacaga atggggtcta catctcgtaa gagctgttgc
      541 tcatatatct ctcaccagaa ctaatgcact tctgagcttt ttcttaacaa atgcttgttg
      601 tatcacagcc tgcttttctt agatgttttc ttgctgttcc ttgtctcttt aatgtggtat
      661 tttaacaact tctgagggag cttctgaaac ttcagttata cctggtggaa ggctctattg
      721 ccaataaaat acacgtagaa ataagtcgtt ctaaaaagtg tttatccggt tagggatgat
      781 atttcttgag ggcttttttt aactgacaga tgttaatttg tagttctgat tgatattttt
      841 ggtcagtgca gttgcagatc cttcttttac tttagataca gcacacttgt attttctact
      901 gaaaccatac tggtttcacg taccag
//
LOCUS       KCLA01000824             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13277upu ultra-conserved element locus uce-5761,
            sequence.
ACCESSION   KCLA01000824
VERSION     KCLA01000824.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13277upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-5761"
BASE COUNT          202 a           91 c           95 g          156 t
ORIGIN      
        1 agtagtagta tctaaatagt ttgagaaaga gataatggca agtgatttta cttaattatt
       61 ctttataact ttcaccctat gacattaaac atatgctctt tttgaaaata gtcattaacc
      121 tttcacatga tgtataacta gctttatcac tccagaaaaa aaattccact ttgaggtctg
      181 aaaagaagat ctgttgggag acacacaaat ggtaaaccac gctgaaggac acaaaaaggc
      241 ccataaaaca tcagtagggt tataaaggtc tatggatttt aattgctgtg tgccattggg
      301 cctttacaaa gcaatcaagc aggcaatctc tgaagacagc cctgccataa tacatttaac
      361 aatagagttc tcaccccatc agcagactag ggtttatgaa ggtcccaata gcaattaatg
      421 accttgtaca ttaagagaaa aagacaaaat tacttaaatt aactactcct tttggagact
      481 tcggtgtcag aaagtataat tttaaaagaa ggaatgcaaa agtttttgga gtaataaacg
      541 aaat
//
LOCUS       KCLA01000825             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13292upu ultra-conserved element locus uce-4044,
            sequence.
ACCESSION   KCLA01000825
VERSION     KCLA01000825.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13292upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-4044"
BASE COUNT          178 a          177 c          173 g          231 t
ORIGIN      
        1 caaacctagt aactatttta ttgaatggat gtaggtacat ccttctccca gcaaagccct
       61 agaagggttc agaaacagcc tccatttgtc acatgtctgc ctgtgtccca caaatgccac
      121 ctcaggctcc gctccccaag tgctgcttgt gtgaccaccc catccctcgg acaaaaactt
      181 ttgctgtcat atcacaggac atgctaatct cccgtatccc gtctctgtaa cccagaagcc
      241 gcctccccct aatattttgc atattcccta aattcgtttg caagggggca ggagaggaga
      301 taacggcggt gagttgagcc gagtgggaac tgctgactga caaagtgtgt agtgcagtac
      361 gggtgctttc tggctctcta attatccttt tccttcttga ctccagtatc acatgtagcc
      421 atgtgtagaa tcataaaata attatgcagt gtacaagctt tctgggagca tgtaccactg
      481 ttttcctaat tctttatcgc tcccattgat cgtggcgtgt gtgcattgat ccaagtcggc
      541 catctggttg gggaagataa gcatgcgagt gtctttgcat tgcactgtca ctcagggagg
      601 ggggtacatt ttggctgtag ggaattacag gggcaggatt agccctcttc ctaggagtaa
      661 actgaatttt aaatgtagtg ttgcagctgc atggaccatg ttgctaactt ctgtttttgc
      721 ccatagactg ggtagatttt tattattact tttattatt
//
LOCUS       KCLA01000826             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13307upu ultra-conserved element locus uce-750,
            sequence.
ACCESSION   KCLA01000826
VERSION     KCLA01000826.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-750"
BASE COUNT          183 a           79 c           79 g          179 t
ORIGIN      
        1 cctttttcat gccagacaat agaattttag tagtaactgt agatttaaga taacattatt
       61 tcttcagcat ggttcctata tacatgcatc ttttgaatca atacaattaa gcttgtctcc
      121 tgttggaatt cttgtaatta tttttcctga aatacttttc ctgtaatgat attgaagtta
      181 aagtaatcag gttactggca gatcatgtaa aattcaactc aaaattgctg gctgcttgat
      241 tttaatttgt ctgacatcaa gtttgtttga aaagggataa tatgtggtta aaccaaggag
      301 cttataatta tggttgacat ttgtttgttt ataatgaaat ctaattaaag ttcatacatt
      361 ttaaaacaca aaagttaatt accgaattgc tcacttcact tatgcacagc agtcaaatta
      421 acttgcagag caaaaaaaat gacaaaagac tgtgcataat aaaaacaaaa tgcccagctg
      481 atcttggcaa gaaaacaaat ttgccatgat aatattccag
//
LOCUS       KCLA01000827            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13336upu ultra-conserved element locus uce-550,
            sequence.
ACCESSION   KCLA01000827
VERSION     KCLA01000827.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-550"
BASE COUNT          316 a          176 c          235 g          328 t
ORIGIN      
        1 gaattgctgg cgttgggttt agtctggaat ctgtttcagg agtgtgtatg acaatctcat
       61 aggacttgct ccatcagcag ggttttcttt ccctgtcact tctgcattta tacaaacaca
      121 atgatttgtt gctttgatgt gtgtgtggaa ccatattact gggaattagt ttaaattgta
      181 tgaaaatgcc gctctgtaag caacactaac aaagagaagc taatacacat atttacatta
      241 aaccatgtat tctgtgccag ggaagcacac agctattcag catggagccc gacaatctct
      301 ggggggtgga ctgaagtagg cagtggaatg ctcctctgca gcgcagcact gcaagtttac
      361 attaccacac cagtatccaa tcagtacttt taattctttt aattaccaga atctctagag
      421 cacataatgg tgtggaatat acacatgtat cggtaataaa caacatgtat cttgaagaaa
      481 tgaatttagc tttggcaaca acgtgatagg gagatcaaag agctagctgg cattaaaatg
      541 atttagatac atttgtcata ggcagctgct atgctaatct catttatgca gttgtcagct
      601 gataggttct gatgagccag cttagtggga aaatcattag tagatcccta ttgtgataaa
      661 tgttatttat tactgtcaaa tggtattaat gtttgattca aagatgggaa atgggcatca
      721 tctacatgaa gttcatccat tcatggtcaa cgatgacaaa gggagctgtt gaattccagc
      781 caaaggaact tcatttctgt aagaaaaaag aataatggat ttaatttgca tatgttttaa
      841 aagggtaatg aagtaatatg atgtttatct tggttgaaga gtggtaattt ttgctggcac
      901 ggctccagca acatttgagt cattgtgcag catttgctgt tcagttgttg gttgcggaag
      961 gggcttttca aagcagcagg tgcataaggg gggaggaaac taaaatgatt tattcattag
     1021 acccaaaaat gagcaatctc tgtgtctttc ccctt
//
LOCUS       KCLA01000828             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13352upu ultra-conserved element locus uce-6719,
            sequence.
ACCESSION   KCLA01000828
VERSION     KCLA01000828.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13352upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-6719"
BASE COUNT          200 a          133 c          162 g          222 t
ORIGIN      
        1 aacatcggtg gtattcactg caggtgctcc tggggacttg ctgagctttg tggatgttgg
       61 gttgccctag ctggtgacct catcatttcc agaagcaggt ggaggtggca attatagcta
      121 cggccactat cttgaacctt ctgtagtagg tgatgaattg taaatggcta gacccggtgc
      181 acaacaataa actcaaataa atcttcaatg tgtaataatg acaagactga aagactggca
      241 gttataacaa ggctgctgtt gtcacccact ttactgtagc cttgatatcc atcattatca
      301 gctggagcta gctcaagagt cggacaagaa ggtctgaaga aggatgagtt gtttgcactg
      361 aagcgtccag taggtcccat ctggcagaga gtaaatggaa ttttttgcct gttcgctggg
      421 ccagagctgt ccatcatttt ggtcagatat ctgatcactt catgctgtgg gacaatatgg
      481 ctttgtgctg ttcggtacag caatggcaat taaaataact aaatttttca tttatttcaa
      541 gcttctgttt tacctcagcc aaagatgatc ttacgaaatt aacattaaca gctttttctt
      601 tctttgaatc aggaattaaa tttagacctg tcagcactaa gttactgaga actttaaggt
      661 gataatgtaa aaagggttag aaatacctgc acaatggagt gttttttttt taccagt
//
LOCUS       KCLA01000829             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13366upu ultra-conserved element locus uce-3368,
            sequence.
ACCESSION   KCLA01000829
VERSION     KCLA01000829.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13366upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-3368"
BASE COUNT          214 a          158 c          170 g          245 t
ORIGIN      
        1 ggggggggga agctatttcc acttaaaatt acaaagcttt tattgtacga tgctgccagg
       61 tgtttagaaa ggctcctcta gacactcagc cattaaacca agctctgact aagaaaaagc
      121 cgcttcattt ttttatgttt taaaatattc ctattccatg agtgacatcc tttcaataac
      181 tgaatttaat aaagatgtac cttatcaggc cgtgcagata acatgaagtg ctggtactaa
      241 tgctgtacaa tattcttcaa acagattagc aggatgtgcg cttcagcaaa tttattctgg
      301 ctatctcccc ggaatcagct gtgtgctaat gcttgtacaa ctcctacacc aatggtgtta
      361 tcataaacac agtttaatag aggtgactta gtgaggctag acatcacatt cctaaaccaa
      421 ccgagagcta cggtgttgtg cagcgtctcc gggaaataat tacaattaag acacttcctg
      481 cacgttttgg gatccggtct gtggttgtca gggtgaatct ttgtaaaggt aataaatttt
      541 ggggtggatt ttcaaggcca caggcttacc aggacgacaa taccgccttc ctgggcatta
      601 ttgtgcgtga tgatagggca gtcaggtgat accgatgggt tctgatagga acaagttaca
      661 gctctgtgtt attaatcagt tcccctaaaa tcccagtgtt ttgtccccag tgtgaaatgc
      721 agttatgtgg agtgagacta tctagttact tccttttctt ccctattcag ggatatatgt
      781 cttttct
//
LOCUS       KCLA01000830             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13382upu ultra-conserved element locus uce-7125,
            sequence.
ACCESSION   KCLA01000830
VERSION     KCLA01000830.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13382upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-7125"
BASE COUNT          180 a          135 c          114 g          223 t
ORIGIN      
        1 tctgcctgaa gcatctggat ccctcagccc agcaggagtg ctactaaaca ctttggtgat
       61 cctcgatgcg tggttgttta ctcctagttc caagcatcac ctttgatttc aagggtgggg
      121 atgccctaag agtttgttcc agaaccagtt ggttacaagt gcacctctta tctatgcctt
      181 acaaacttca gaggccatat tcaaaacagg gttttatcag tgtatgcaag ggggtgcaac
      241 ccctcttctc ttcctcccca ggtcaaacag tatggacagt tttcacacat atctacctgt
      301 ataaccctct gtacctctca taactggtca atgactgtaa caggttacat caggtgtttt
      361 ttctacatac tttttacaca aattctatgc gattaatgta acttaattca atgcatcatt
      421 ttattgtact agttcttaag cttgtcttta ttttttttct aggtgactgt ggtttctcgt
      481 gatttttatt gtataaataa atgaggtggc tgttgatgct tactctctgt tactaagaat
      541 ttttaccttt ttggaagaaa acattgctat gaactaatga atttcaaagg tcatttactc
      601 attgtaaata cagtattgtg caaaaaacaa aaatgagaaa aaaaacccac cc
//
LOCUS       KCLA01000831             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13397upu ultra-conserved element locus uce-738,
            sequence.
ACCESSION   KCLA01000831
VERSION     KCLA01000831.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13397upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-738"
BASE COUNT          206 a          207 c          175 g          244 t
ORIGIN      
        1 tggggatgag aaggatcatt ctgtgcagca gctctcacac tcacacacca gctcttttct
       61 atctccattg gggtcagctt gcctgacaca gcaaaggaga ctccccgttt attctgtttc
      121 tctggtgtgg tctgcttggt ttgatagggt cttggagagc aaatctgacc acagatctgt
      181 caggaagttt acattacaaa ttagctaatt gggttctaaa ggatttgcaa ggaaaacact
      241 tcccactcta ctaacagcta tggcacacac ttcagcctct ttttctctct ctcttttttc
      301 aatgcctgga acttattggt tgcaaaatca tgtagaagtg tagcacatac acgcacacac
      361 aacgcacaca caaaaacccc tagcaccgct gctcttttag tggctgtgac cttgaagctg
      421 tgatgagccg gggagatgct acaaaatgta caggctccac cagatgaggg actttgatgc
      481 tggggggagc tctggggtca agcgcagaaa ggggaaataa atggtaaaat cactgtctct
      541 agactcctca gataaaatgg aaacaagcac ttggcatttt cagtgctgac aacctggctt
      601 gtttgttcac tctaatgagc actctggctc cattaatgag cagactgaat ccattatcat
      661 catcatttca aaaggcagcg tgccactaaa tagcttccca tattagcagg cattgccctt
      721 gttgttccat ttgatcagca gtggcagcag ggagcccgct gcactcccac tttttccccc
      781 tctctttcca ccctcccctt ctttttttaa tgtccttttt tttgtttgtt tg
//
LOCUS       KCLA01000832             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13412upu ultra-conserved element locus uce-7205,
            sequence.
ACCESSION   KCLA01000832
VERSION     KCLA01000832.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13412upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-7205"
BASE COUNT          240 a          206 c          274 g          268 t
ORIGIN      
        1 ggaacataaa gtttggaaga caaaccttac tctttctcat cttgtaaatg cagaaacgct
       61 gttttttcta aaatccttgt gagcagattg ccgcttttaa cttcataaac agaagattag
      121 tcgggaaact ggggtcagcc tgggtacggt caaggcacga gactgggaat tgaggatctt
      181 caggtgtgaa agacgagttg ggctggtgag actgtgtctg ttgtagtggc tttctcggtg
      241 caaaggtcta aggtaagaag caacttgaaa aggctgcgtg gcatgtgagg agacaagtta
      301 gctcttaatc atatcatata ttagcctcct ttgcagcaga tacatctgcc gtaaaatgct
      361 tagtgctgag agcctgattg ggcagcccat gctaagtgtt caaactcctg ctgccttttt
      421 tcttcaaaca atatcttctg gcttccagat ttctgataaa ttgataagag gaattgcgtg
      481 agtcaataga gttgtagaca ctttgccaat ataaccccag cgctattgat ctgccagtaa
      541 attaaagtct tacttagagg ctgccgatat ttctaatctc ctgcctcacc aattacaacc
      601 tcccagctac ctgggaaaga cagcggatgg cagatgaggc ttcagagggg ctgcagtgtg
      661 gcagccagag cctgtataga gtggaatagc tcaggaacag cttttgggga gacagtacag
      721 tggttttgtg ttcaggaatg ctgtagaagg gtttctccag gtccgttttc tcctgctaga
      781 ggacagaggt gttttggagg agtgacaagc ccccccagcc acagctggag tgttctgcct
      841 caggctgtga ctgccatccc tggcataggg tggtctggat ggtcacagtc cttgggaggg
      901 atggggggga tgccgactgg aagagaaggg ttggaggaac ctgctctcct gtggcttctg
      961 ccctgctgct tccttgggct gaggcttc
//
LOCUS       KCLA01000833             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13426upu ultra-conserved element locus uce-7629,
            sequence.
ACCESSION   KCLA01000833
VERSION     KCLA01000833.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13426upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-7629"
BASE COUNT          285 a          154 c          164 g          313 t
ORIGIN      
        1 tggaaggatt aaaatgtgat atgcttcatg ttttcacaag tcttatgcag tttgttgtta
       61 tttaagcttg cattcccact tacatgatga cagtaatctg aagaaaataa actcctctga
      121 agcggtgttt ataatgtgca tccttaactg acaataagta attggaaaag aatttttgtg
      181 tttgtaaggt gtgaccttga cattgtttgt gtaggcctcc aaagcaatta ttggcgaaat
      241 ggagatggaa aacaatggca aaaagcaggc agaaatgctt gaaatagcac aaatcacaaa
      301 cgtagctgaa tggtattagg tgacagttta cttttaatga gggaagacat gaagtaatta
      361 aatcttgaca tacaattatg aaaagtatca ggtaacaagc ctgctctgca atataaaata
      421 agaaaacaca ttttctgaaa acttgcctga tgctctgtca tctgagactg ttctttatga
      481 gtgcagggtg aaggtcaagg aggtatctca actccatcaa tcctttggac agttacaaat
      541 gacctttcac ttttcataag acattcaata ttctgaatgg gggtgataca tttttctgtg
      601 tttagaaaat aacaaaattg aatcctttca tagcgcacaa ggtgcatttg tgtttgaatc
      661 tcctgaacag ctcattcatt cttaaatttt cattgacacc aatctcattt acatggacta
      721 aatggtttct gtttcaacat attctttgcc tttacctctt tgatttccat taattttgac
      781 actaatttgt gtttcactct ctcttcaagc aatgtttaaa aacgttacag tgtagatgtg
      841 tggggttgaa tcactgctgc tctgatttta tattaatgca aatccaagca tcacatcaca
      901 tttttctttc ctattt
//
LOCUS       KCLA01000834            1009 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13442upu ultra-conserved element locus uce-6071,
            sequence.
ACCESSION   KCLA01000834
VERSION     KCLA01000834.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13442upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1009
                     /note="ultra-conserved element locus uce-6071"
BASE COUNT          293 a          233 c          256 g          227 t
ORIGIN      
        1 aaagctctgg catcgtggag agggaacttg aggagacaca gcagtgtcac tttaatcttt
       61 tttgtgtttt ggagaaaacc aacacatgtt agagttgaag tcctccaggg gtaatatgtg
      121 aactctggct gttcaccaga agccctgtca gtgaactttc catatcgata gtttcagcag
      181 gcaccagtgg atctgtttac caatatgttt aactaaaaaa acccacctag aacgactgca
      241 aattttgtgt gagaacatca tcccagtttc agctccaaga gagcttaatg ttcttgcagg
      301 ctgcaagaga acgtagtttg attagaacag cacatattac gggtttgtat gaaatgagca
      361 tcttaaggca agggaaagaa agcagcattg ttccagggct gtttttcaca ggcctgtatt
      421 catatctcat ccttgttgtt tgcaggagag gcagatgtga accagaacaa tgggacctcc
      481 acgaagagcc cagcggtgac agactccaaa ggcacagcag acccgaagaa tgcctggccc
      541 gaggccaacc cagctgacaa gactggtcgc ccccacttga tccgcctctt ttcccgagat
      601 gccccaggaa gagaagacaa caccttcaaa gatcggccct cagagtcaga cgagctacag
      661 accatccaag aggacagtgc agcagcttca gagaattcgg atttgatggc ttctcaaaag
      721 cgctcctcgt tccggcacgg atcaaaaatg gcatctgcga gcactacaga ccatgctaga
      781 catggatctc caaggcacag agactcgggt ctacttgact cgctgggcag attctttgga
      841 ggtgaacgac acgttccccg gcggggcaag gtgagctctg aggagtagag aacggcacag
      901 ctacagaaag tacagttggg tgggactaaa atgcaagagt tgacttagcc agcaagatgg
      961 tacttgcaga tgtgtaagtg tatgcttggc tttaaactga aaacaacaa
//
LOCUS       KCLA01000835             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13457upu ultra-conserved element locus uce-3068,
            sequence.
ACCESSION   KCLA01000835
VERSION     KCLA01000835.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13457upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-3068"
BASE COUNT          269 a          133 c          138 g          296 t
ORIGIN      
        1 aatgaagcat tcaaaacgta ctgaatacat actgaggtaa attgctaggt ggctggttta
       61 aaaatatata catacaagct aatttgtaga tattaattga atactatttt aatgttatca
      121 ctgtgcagtc acagacggtt taaaaagaag taaaaagact gtgatatgga atgtcttttt
      181 ttccttttat agacttggca aagaccatcg gtttatggcc tggttcgttt cttgccagta
      241 gacagcactg aaagttataa aactaaaaca attgctttca tttatatctt ttcttgatta
      301 ctctgatagc tgaaatgtct gaagaagttc agaatctgta aagcctgtca cattacagaa
      361 acatgtctct ttaaactaaa tgtgaaattc cagtaattga agtgataaat ctactgtttt
      421 tgctggggta cttttgatga gaactatagt agtaaattag aaattattct ctgctgttat
      481 atcatggtaa aagcctttcc attatctgtt gtcagtcact aggtatgggc aaataactca
      541 gttgtcaatc tcactgtgaa accctaagtt ctgggaataa tcaataagga aaaataccaa
      601 aaactctcta ttatctccac gcaattcttt agacaacttg aagttgtttt tttccctttt
      661 tacttctgca catctcattt attcacagat atattggata tctcagaata tttcattttt
      721 tatggcaagt tacatgtcag cttgttttca aatggtatat gagagttaca tttcaatacg
      781 ggtaagcagc tctacctgtg tgtctaaatg caattttaca agatacagac ttaatt
//
LOCUS       KCLA01000836             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13473upu ultra-conserved element locus uce-4891,
            sequence.
ACCESSION   KCLA01000836
VERSION     KCLA01000836.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13473upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-4891"
BASE COUNT          229 a          125 c          122 g          196 t
ORIGIN      
        1 ataaaatgga ctgctctaac caaagatatt ttatataaat taagaatttg ttttaaaaac
       61 cagggactcg atcagcagcg ccgcttaatt taaactaagt gttaaaataa aagcaataac
      121 actgcgaata aattaatgaa ctacaattaa ctatatttac aataggaggt tttgttggaa
      181 acacctattc cctacactga taaaataaaa gctgcatccc gcaaaagctg aaataagtta
      241 aatgaagatg cttttaacaa ggttattact taagcagtga caggtttaca gattttagca
      301 ccattgggtt ttcacaggag ctgcagcaag tgctaaaata acacacacct tcaggttcat
      361 taaatccacc agtgtgatga aaccactgat atttttctgt attactcgag tgcctccaag
      421 acccggctat aaataagatg ctctaataac aactgtttgc agtgctaaaa caataaaatc
      481 attcttcgtg cttatatgca aaggaagaaa taaggcaggg acccttcagg cagttgtgtc
      541 tgggggtttt tcttctgcct tcagcctttt ccttatcata gaaaggctct gtaaaatgtt
      601 taatccttct ctatggctgg gagaaagttg tttaaagggg acctgaagag gcagctccca
      661 tcctaaaatg ct
//
LOCUS       KCLA01000837             997 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13488upu ultra-conserved element locus uce-415,
            sequence.
ACCESSION   KCLA01000837
VERSION     KCLA01000837.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13488upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>997
                     /note="ultra-conserved element locus uce-415"
BASE COUNT          360 a          176 c          146 g          315 t
ORIGIN      
        1 tatcagagga aaaaagcaag tacatttcta cgtgttttta acatagtcta tttcaaatat
       61 actatctccc acttataatg tcacagacct tgaaaaacaa accaaagttt gctacaaaaa
      121 aaatcagtaa tttttttaaa gagccattga tatattaaaa aaacttccct caatgtttta
      181 ttttcaatag tgattacatc accttcagct tactgcgttt ttgttaatgc catgcgacaa
      241 tctaagaaaa taaaccacag tttttgtata tcaatgtaat atctgttaaa aaatactgat
      301 ctcaacttat ctattgttag tttacaaata aaaatgtaga taattgtaaa ttagggtaag
      361 caaagcatgc aaatctatag attctatatc tgaattccta gattagcatt aaaaccaatc
      421 accgcaacaa atacctcaac agtatgcctt gtgtgcagaa aggaagcgat actgaacatt
      481 caatgccaca actgtaaggt tttcggagaa gcacctgtgg cagtttcagc agtttctata
      541 tggaatgctc cccctttcta ggattacttg aaaaaatcaa gtcaattcga attacgtagc
      601 tgtaaaacat tgacatgtgt agtttttaca gtttcagaat cttctgtttg atttaaacgg
      661 gcaatggtgc ataaacagga aacttatatc ataagggatc acgtatttgc aggcaacatt
      721 aagactaaaa gttacattaa cacacaaagt gctgtagcac attattcaat atataagcca
      781 ttatcatgtg accaccttaa caacaagata ctaagccttt tatgccttta aagcattatt
      841 acggtcatcc tgcaaccgat ttgtcagttc ttcacggaaa tttatataga ctggattaaa
      901 gttactggtc aactcatggc ttcaattact taaaatttag taggctgtat ctcagaagaa
      961 ttagtaacta ttcctataca aaaaatagca gatataa
//
LOCUS       KCLA01000838             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13503upu ultra-conserved element locus uce-3211,
            sequence.
ACCESSION   KCLA01000838
VERSION     KCLA01000838.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13503upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-3211"
BASE COUNT          191 a          122 c          131 g          197 t
ORIGIN      
        1 gttctttccc ctccaagtca tgctaagcaa gcagcttgcc ctttcttatt ccgagtgaaa
       61 atactttgat ccagttttct gaagacaata ctcatttcat aagaatattt aatcagtaga
      121 aaatagggag gatttagttt gtttgtttag tatttaacga agtgaataag gcagattagg
      181 ggaagggggg gagaccggac ccataaacaa ggtgatatat aatatttttt ttcgttctcc
      241 ttttaaataa ataccgatca gctttatgtt cagagacaat aggagccgtt ggcttaaatt
      301 tgcagtttac tgtatttatg gctgtaatat caaggtgctg ccgtcgtaat ttcatgcccc
      361 aatgagaaga gcaaggtcga agcaaatgct tccatcggca tctgctaaca cactaactca
      421 taaacaaggc ccggctggat caggtggcac ggaataatac aggctaatga aatacagcac
      481 agctttccat tactgttagt ttttacagtg tcgtcattac gtgtaattta tgtttaaaaa
      541 attcaatttt atacaaggct ctgggaaata ggggtctgca ggtcacccga cgacttttaa
      601 cggctctcag agtccttatt gcactctact gttccaacaa a
//
LOCUS       KCLA01000839             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13519upu ultra-conserved element locus uce-4327,
            sequence.
ACCESSION   KCLA01000839
VERSION     KCLA01000839.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13519upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-4327"
BASE COUNT          273 a          203 c          142 g          223 t
ORIGIN      
        1 ccccccaagg atcggtgcag tatattaaaa actagaaagc cccacatttt catttaaaga
       61 gtcaaacaca tccttgttga agtgtatttc acatttaaaa tctacatcaa aatcccttta
      121 aaccattaat tggaatttta tctgtgtacg taggcagcaa ctgctgacac agatttaact
      181 gaatataata cacctcttta cgctgctatt ggcacataca acaaatttgc ctcattagca
      241 gggactactt agtttgctgt agtaaacaaa gctgccaata cggcagcctc acatactttt
      301 cattcactca gaaatttttc tttacttgga cttctagcat gtgccatgga agagccgaat
      361 gttaaacatt cctggagtgt cacaacatat aatacaataa aacagattac aaccatacct
      421 ttctttcaca gcagtggtgc caagcacagg tacactgtag caatcaattt gttctgcaga
      481 cagtaaggct ttcatagaat actaatgcaa aacctctttt ctttctcctt cgacttgact
      541 ccccaaagcc taggtcccaa ccaatacaag gagggaagaa tgtcttctgc tgagataacc
      601 acaaatacca atcaagtata cgtgtacaag ggcacaggat taaacctcca ctgggcttga
      661 ctcgggcact gagagcagct aaacacatgc acagcaaggt cagaattaaa cacatacaca
      721 cacgcgcgcg catctacttg agcgaactaa tttatcacac tttaccactg acggcttttt
      781 acctcggggg agtaaaatta catcctggtg aactgacaag gttcagacac aacagcttcc
      841 a
//
LOCUS       KCLA01000840             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13534upu ultra-conserved element locus uce-1867,
            sequence.
ACCESSION   KCLA01000840
VERSION     KCLA01000840.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13534upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-1867"
BASE COUNT          210 a          184 c          183 g          283 t
ORIGIN      
        1 ttgctgcatg tgctttgcta taggtctgtg gataatgtta catatttggt gaatttgctt
       61 gcaggctact ttttactcag ctttatgcat gcagcttatt ttgcaaatgt gtgcctgcac
      121 tgactgcatg aacgtacagg caccaaactt gtgttctgtg tctgcagcac accaaacgcc
      181 ctggaaggca agtttttaaa acgtaaagat ccaggtaaaa ctcaaagtgc aggtcagtca
      241 gtcctgatgt cagctgtatg tcacacagcg ccatttgact gaagagacgt tgttagtgtg
      301 tgaatgatgg aatgcagaac atctacaaat agcgcactct tattccaata atggagaaag
      361 ttcactggct taattcttct gtacttcgta gccatagctc cactgtgtgt tcagtatgtc
      421 tggtctcttt tcactataac caacagaagc accatacaaa agtcttacaa tggatgtctt
      481 aatctctctg tgtgcttttg gagcattatt ttcaattcca tcatgcaggc tttttttttt
      541 ccctttccac ttctgaagtt ttattacaac aacagaattc ccagggagct ttaggggcaa
      601 ggttcgcata atattgccct aaagttttgc tcgaggggtg gaatccacac cccagtcctg
      661 atcatctttt tgtggggttt cctttctgag agatgcagtg cgcagccttg cggagttgtt
      721 aactgtggac agattttttt attgtttacc agacagtgcc catctacgaa cctttcacga
      781 tgatttcttt ctctgacctc tcagtgacta ggcatcttgt tccttaacac tgagggaggc
      841 tgaaaaatgc ttgagttgct
//
LOCUS       KCLA01000841            1022 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13549upu ultra-conserved element locus uce-2903,
            sequence.
ACCESSION   KCLA01000841
VERSION     KCLA01000841.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13549upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1022
                     /note="ultra-conserved element locus uce-2903"
BASE COUNT          303 a          190 c          200 g          329 t
ORIGIN      
        1 ccctttctta taattttgct atcactacct attagtgaaa attaagtggg gagaggtttg
       61 atcttaagta tctggattaa actttcactt ggaagaaggc tgacctagaa aggctacctg
      121 tctgtcctaa aatcacctat gaatagtctc actgtctgac atgccctaaa tttttagtct
      181 ttattttcag agaacagtgt cagacttcta aggtgacttt ttaaaagttc ttttttatta
      241 gattttttcc ccccccggtc cttttatctc ggatgagaat ttctgcctta taattattaa
      301 agaggctggt aaaactgcac atattggcga acagattctg tagtagtagt agtagctggc
      361 agaaatgtta agtgcttttc acagtcaaca ttcaaacaga ttatcagatg gcatatttca
      421 ccctgttgtt actttaaatg aagtgaccat gaaatcaaca aatctgctgt caggtgcctg
      481 tcacgaagat agttctccct gtcacacaat gcctcacata acaggtaatg tgtttttaag
      541 aatcagtcct gtgtcacctc atcaagtcct tgttaaaaga tgaaataaga cggatggtgt
      601 tgtctcccat ggagttgact gaaattcagt gaaaagcaat gtgtgttcta aaaaaataca
      661 aaggagagca gtgcaggtac cagcactggg ccaccactgc ctttttcttt tgtctcaaga
      721 acgataattc actttttatt gcttattcct ttccaggctg caaattaatt aggtcaagtt
      781 taaaatctgt gataaggaca ggaagaatta gtcctcagtc atcaaacaaa tgaggactca
      841 gagtggtggt gtgccagtag ccatgcgtcc acttggatcg gttaagacct tcttcagtgc
      901 tgaacagaga tgacattcgt aattaattaa gttatgaggt gttgctaaca ataattttgt
      961 tcgggattct taagttcagt cattaaattc agggccaggg ataaactaaa attaccatat
     1021 tc
//
LOCUS       KCLA01000842            1067 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13565upu ultra-conserved element locus uce-1613,
            sequence.
ACCESSION   KCLA01000842
VERSION     KCLA01000842.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13565upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1067
                     /note="ultra-conserved element locus uce-1613"
BASE COUNT          346 a          219 c          245 g          257 t
ORIGIN      
        1 gattcaaaga gcaattaagg atgatcttta agaatcaacc gaaatagaac agaacggagc
       61 gtgtcgggct ccgccgtcct gaaaagcgat gctgagtcac gtctgacagc agcgtttgga
      121 ggaagaggga ggcaaacctg gagcaaggcg agggaggaac gcgcacggga tgcgcggaaa
      181 gaggaaacaa agagacggcg ccgaggtgaa atcctttgat atttcctcag cttaaagagg
      241 taattcaacg cattaaaacg gatccttgaa atttcaaagg atgacactcg cacaacaaag
      301 cttgtcgaga gcgctatttc ctaggattag aacaaaaacg tgctgggatc tgctgtatga
      361 tcttacggcg ccgagcaggg ctgtgcgctc gctgttatgc aagcaccatc ctccaatagc
      421 gaattttcat aattataaca gaaaggcgta aattttctaa tgcatggcag ttcaaaaagt
      481 aatcaagaga atgagcctga gggctatttt aatgtatgca aagctagtga cccacagtaa
      541 atgggaggta ggcttcaatg aatgcaaagt aatgcacaca tactaaagac ctggtctgat
      601 gagggacggc taaaattaac acccaattaa tttccgaatt gacaaacaaa tgaaacccat
      661 aaatctactt tctcattaat tttcttgtgg tataatttaa agcagtaata tgagggcaaa
      721 aactgagcat tatccatcat aaatatcaaa aaagatagca ctgtaacacc ataaattatg
      781 catattacct gttgttaaaa atgattaatg tattatcaac tttatcgtgc actgtatatg
      841 tctagacgta tctaaaatct gaaatttcat ttagtgctca agaaataaag agtccagaag
      901 aaatgggatt ttctgcaacg ctcccttggc tttgcctcct gacccccgtg ctcccaaccc
      961 gtccggatcc atcccaaacc ttgggttgtg gaggttgaga acatcgcaga ggtgatgtgc
     1021 ccagcctccc cggggaaggg aaacaagtca cctgctctct gagtggc
//
LOCUS       KCLA01000843             436 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13580upu ultra-conserved element locus uce-6412,
            sequence.
ACCESSION   KCLA01000843
VERSION     KCLA01000843.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 436)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..436
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13580upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>436
                     /note="ultra-conserved element locus uce-6412"
BASE COUNT          129 a           88 c           81 g          138 t
ORIGIN      
        1 agcagtcgta gcgttactgc tgttatgatc attatattat ttaggttttg ccccctagca
       61 ccacattgag atgattggcc tgtgctccgc cggttagaaa agccttcctc ctttgtaaat
      121 tcagaacaag tttcatgaaa agtatctcag aaacatctgc cttcattata attatatttc
      181 tatttcagct gcaccgagct atttacagat gagcctgttc ataaagagct ttataattaa
      241 gcaaacagaa atatcttttt ataggatgca gatctagggg cgataatcac acacaaagta
      301 cacagcaaca gtcgcaaata gagtgtttaa tgctagttat gcagttagcg atgtgctcaa
      361 taaagcctga cttgtctttg ttcctaaatg taggaaaata cggcctttgc tgcactaatg
      421 tgcaaactgc cttttc
//
LOCUS       KCLA01000844            1153 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13595upu ultra-conserved element locus uce-7425,
            sequence.
ACCESSION   KCLA01000844
VERSION     KCLA01000844.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13595upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1153
                     /note="ultra-conserved element locus uce-7425"
BASE COUNT          338 a          250 c          219 g          346 t
ORIGIN      
        1 tccctgtttg gaagtatctg tctttgtgca tgttaagaaa atacagagca tatttcatgc
       61 tggcacacag aatgcgttct ttcattgtag tgtgatttct cttagaaaat tgtcatgagc
      121 tcaggacatg agaaaggcag ttccacatgg acaaagagac aatacaggta ttaaagtgct
      181 cgcatttggc tgggcagcct cttgaccagg ccattattgt cactgtgcat ccttatcact
      241 tgctcaggac ctacagatcc ccagttaaaa gcgtaacttt gactgtttac tttctatctc
      301 ccaaatcaat gtgtcccctc gggatgagct gtacgggaaa acagttcatt aaaatattgg
      361 ttgttgcagg cagacgtcta cagaatgaac cagtagattt gcttttgcaa agcaactttt
      421 gaaaaagcat taaattccat aaaatcattc tcttttctta agctacagaa gcagcataaa
      481 ggttgaaatt ttccattatg attgttacct gggaagtagc actggttcta gactctgggc
      541 tgccactgat gtctaaattt tcttacagtg tacacacgaa tacctgaaac acacacgcgc
      601 acagtcaatt actgggtcac tttggtaaca cgtatttcaa cagttgcacg tatcctacct
      661 ttgcagtggc cctggctcgg aattcggggc agccattaac agttatggtt tcatgcatgt
      721 attgatacac ctaaaatgtt catgaaaata aaaggaaatt aattatagaa gcataacaag
      781 gacttcatat tagcccacac agggcagtcc ctttccctca taagaccacg tttcaccaat
      841 gctctgttta tgcattcaca tagtcaaggc tctgctaaac ttatgcaggc ttatgttttc
      901 agagaacatc aatccctgtc tcacgacact ctgcaaactt aactgcacat cttccagtat
      961 gattctcttc ctatctctag cacgtcgttt cccaaaacca ggacaattaa attctatgtt
     1021 acaaaaaatt ggtgtctcca ggcaataaaa tggaatgcaa atgatctcaa ctaatttgag
     1081 tggtggtgta gcctccaaca acaggttctt tgttctctga actttcctat gaactgagga
     1141 tttaggagat gga
//
LOCUS       KCLA01000845             935 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13611upu ultra-conserved element locus uce-711,
            sequence.
ACCESSION   KCLA01000845
VERSION     KCLA01000845.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 935)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13611upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>935
                     /note="ultra-conserved element locus uce-711"
BASE COUNT          306 a          157 c          196 g          276 t
ORIGIN      
        1 agaactttat ttgtaatcaa aatgttagtt aggtgtttat aaaacaactg gtgggtgttt
       61 gtatgcatgt gaaatttgct tacacgagta atcccattga tataaatgag agcattcatg
      121 tgatgaaaac cagttcaatg cgggaacgtt tagaagatgg tgcccttaga aacgagcagt
      181 catctttgga agtattcaaa gagtggttat taaaacttaa agctgagagt cgtcttttga
      241 aggcagaacc ggctagaaag gcgtttgggg agctcacctg ccaaataata atccttttta
      301 atgacaccag ataactctgc ctcaacttcc tcatactctt tttgggggaa gggatgggaa
      361 ggagggtgaa agagggacag tgacagcaag gctgtttgtt tttcccgaaa gttgtttgtg
      421 atttcaggta ctcatgggaa atctcttgat cagattcaca tctgttcctg tcaaagtggg
      481 tgctaagata ccggtcaccc agcaaccatg tccaagaggg aattgggccg ataataactt
      541 caaaaaggaa tgacagatgc tagattagga tgaaagacaa aacgcatgaa aaatgagctt
      601 gttagaataa aaaaattgtt caagcacctt catgcaaatt aaatgaatat tgaacatttg
      661 catgcagtaa tttctacttt ttctgttgat tgagaagaaa taaagacagt acatataaaa
      721 ccataaatgt atattttctt tgcaccaatt aacatacaaa gcagtatctt tcttctaaaa
      781 atgagattag ccacctgggt gcttggctct ctcccacata tgtcacaaca tttttgtaat
      841 gagtatgctt ctgttgaagg aacaccttat ctaattcttc gcagcaaaac aaacaaggaa
      901 gcaaccttat tttagaatac tttagcatgg ttctg
//
LOCUS       KCLA01000846             314 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13626upu ultra-conserved element locus uce-1900,
            sequence.
ACCESSION   KCLA01000846
VERSION     KCLA01000846.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 314)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 314)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..314
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13626upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>314
                     /note="ultra-conserved element locus uce-1900"
BASE COUNT          119 a           55 c           57 g           83 t
ORIGIN      
        1 accaagagtt ggataatcag tcagtaggta ccgctgcagg ccactgttaa ctggaaggag
       61 ctggacaagc atgttctaga caagccattt atttgaaatg ccaactatat gtaggataaa
      121 gtcagtgtta catgcttctc agcaacagta gaaaaataga accagtgaaa acctttttac
      181 aactgtaatg gtactcaaaa gacaaatgta ttgttttaca acgcatcaca caagacttta
      241 attcaagttc ggaggtacct aaataaaaat actattttta aaaaacacta tgtacaattg
      301 aagcgtaaac aagt
//
LOCUS       KCLA01000847             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13642upu ultra-conserved element locus uce-3237,
            sequence.
ACCESSION   KCLA01000847
VERSION     KCLA01000847.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13642upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-3237"
BASE COUNT          182 a          318 c          266 g          126 t
ORIGIN      
        1 ggacggggag ggcgatgacg gggggcggga gaaggaggtg gcgccggatc cggacgcggc
       61 caccctggcg gggatttccc aacccatcgg catccccttc cccaaacggg acaaggtttt
      121 cctgcgggaa tcgtcgccct cgcgccagga ggacctcact ccctccagct cctcggagaa
      181 ctacatccag gagacgccgc tggtgatgag ccgctgcagc tccgtcagct ccctgggcag
      241 cttcgagagc ccctccatcg ccagctccat ccagagcgac ccctgcagcg agatgatcag
      301 cggcaccgtc agccccagcg agctgcccga cagccccggg cagacgatgc ctcccagccg
      361 tagcaagacc cccctctttg aaccgggctg ccagccggag aaggagacca gccagttcaa
      421 catccagtgg gagaacaacg tcaagaagtt catggagatc acggatttca aggagcgctt
      481 ccagctgccc caggacctgg actccatggt ctacttcacg gtggagaaac ccaacgagaa
      541 cttctcttgc gcctccagcc tgagcgccct gcccctgcac gagcactacg tgcagaagga
      601 cgtggagctc aagctgatgc cccccttccc ggagaagaac ggcctcaact tcgtggctca
      661 cgagaagcgg gacgagcggc gggacgagcg gtacctggag ggcaggcggc gcctcgaccg
      721 gcccgacctc cccgacgacg acgacatcga gatcctcaag gagtgcatca gctcggccat
      781 gccctcccgc ttccgcaagg tgaagacctc gctgctctcg gggcaggtcc tgcaccccca
      841 gacgaagaaa cccctgcacg tgcccgtcta catgctggtg ccagcccacc cc
//
LOCUS       KCLA01000848             247 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13656upu ultra-conserved element locus uce-7347,
            sequence.
ACCESSION   KCLA01000848
VERSION     KCLA01000848.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 247)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 247)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13656upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>247
                     /note="ultra-conserved element locus uce-7347"
BASE COUNT           60 a           56 c           60 g           71 t
ORIGIN      
        1 tggtgtgtgc atgtgcagaa gggtgtctac ctaattggcc tcaagagggg attaaactaa
       61 ataaaatcac ggtccacagg gggcctctaa atatggcttt ttaatttgaa aatttttgtg
      121 ggttccagtg taattcaagc ttttcaagct ttattagtgc acagtcgctc gtgcagctcg
      181 caaagctccc atcccaatga gtctgatatg cgtgctcgct ccccgcggaa gacagagcgc
      241 tctcttc
//
LOCUS       KCLA01000849             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13672upu ultra-conserved element locus uce-3505,
            sequence.
ACCESSION   KCLA01000849
VERSION     KCLA01000849.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13672upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-3505"
BASE COUNT          210 a          128 c          174 g          186 t
ORIGIN      
        1 aggatgcagg caactggcag gcagagggaa gaaagcagtg cagccaagac tgcttcccag
       61 gggaaataca atttctaccc tttaggattt aatggatggc attgagattc ccctcatcgt
      121 tttgggagta ggcaggaagg tgagtgggat aaaaaatttt ggggggaggg tgttttgcgt
      181 ttgtttgtga cacatttaat gaaaggtggt cagtttgatc tgttaaacta aaatggtaga
      241 ccagcttaag tcgacactga gctctgacaa tcaagcccag ggaaccagtg aaggaacttg
      301 tatgaactta cagcgcaaac cgtcagcaga ctgggaagag ttttgagggt tacggtaaat
      361 gttcaagagg gcaatggtct gaaatacaaa acgcaacaac tttatattat ggaaaataat
      421 tttaacaaga aaccggtttc ctttagggtc gctttggccg agtctgtgct gaaagaaagg
      481 tggttattct ctcccaaaaa ggagagcttt cactaagctg gtgacctgac agcctaacac
      541 tgtaaagtaa tagagatctc atgacactcc attattgtat tttttttttt aactcagcaa
      601 tgttactgta caggggtttt gcccgagttc agacaaatac ctctcagatg gtatctaaac
      661 acacagctcc aatggcaagc gcacagctct gttcgaat
//
LOCUS       KCLA01000850             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13687upu ultra-conserved element locus uce-2540,
            sequence.
ACCESSION   KCLA01000850
VERSION     KCLA01000850.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13687upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-2540"
BASE COUNT          209 a          204 c          173 g          221 t
ORIGIN      
        1 aaaatcaaac catctacact ttcctgtggg agctgcagaa tctcaactag aagtgactgc
       61 ttatcgatcg gcctcttcct cctgcttcag ctcttcatgc tcttgctcca gaggtatggc
      121 tactcctttt atctaagggc tccctgttcc ttctgctcct gcttttttcc ctgtgactcc
      181 agcatgcact ttccgcgagt ggaatgaacc ttgctctctc ccagtctgtt cgctgtcaat
      241 tcacatcagt ttaaggtcag gaaagctaac ggggagcaag gcgctgcagc atttgaactc
      301 aaccttgcct tgcaaggaac aaactgacaa ttagcacagg gatcagcatc aaaaaagagc
      361 aacccagcgt gaagcctgtc taattagtca tatgaacaga gagcttcccc tccacttcct
      421 cgggaacaca tgcctgtcag atctgataga aagagatttc tctccctaac agaagatgta
      481 gccctggccg aaccactcat gtgagcaaca ggaggctgag ccgcagcatc tcattgtgct
      541 cgagttgttg gaggatgtgt cttgccttgc aagccacaga ttggaaaata ataagggcct
      601 tgatctcatt gctatctcct taatttaata atgctttttg ttcaggtaga aaaatgagca
      661 cagggaaaaa ctagagctga aagctgaatg acagtctcct aatctcaggc aatggtgctg
      721 gctgagagac tgcctgagcc tcattgcttt atttgtgttt tctgcctaag gaaccaaagt
      781 atgcatttat ctcctgctac ctacaag
//
LOCUS       KCLA01000851             925 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13703upu ultra-conserved element locus uce-6342,
            sequence.
ACCESSION   KCLA01000851
VERSION     KCLA01000851.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13703upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>925
                     /note="ultra-conserved element locus uce-6342"
BASE COUNT          294 a          181 c          177 g          273 t
ORIGIN      
        1 cataattcta cagttataat aaacaaggaa agaaatattc cctggtcata taactcaaca
       61 gagcactatc tcaaataatt gactgctgca attaaccttt ttggcatgaa gtcctgacct
      121 ctccatgctt cactctgatt cagtgacttc tccttttgtt cttcactacc agtatctctg
      181 aacccagcaa tactgacaga tcagtgatca catcgttcag aaaacaccac agaagtaaga
      241 gtgaccctat ataatatctt cctttccccc ctttgatctt ctctttattt gactgcattt
      301 cagtaaatta tccatgtagt ttttattttg acagctctct ttacagcagt aaaacaaaat
      361 gtgtgcattg caaatggcaa agattcaaat ttcagctatg tttatccaaa atagcactga
      421 actgcttctg tacttatgct atactgccta cagccttacg gaaggggaga cagatgggat
      481 gaatttagca gggaaacagc tgtggcttga agaagagaca agcaaaagtt ttgctatcag
      541 gcttcattat gtatcaaggt accagtaaaa tgtgtatccg taaggcagcc caaaaagggg
      601 ttttcatttg actagtgata attacctttt ctcaacagct gacaatgttc taagcagcat
      661 tgaataggtg taataattaa gtaataagac aaggcaggca gtgccttgct gggaattaca
      721 agttgccttg ggtgtgttgt gaggcatgag gctgaagggc aagtgacttc agctacccaa
      781 gaaacataat aatccctccc agatgcactg cccggagtgt cttcttgcta ataaaaatgg
      841 aaatttgaaa aaaggaaaat gttagacatg tttcctgtgg attttactga tgtgggttaa
      901 cattacaaaa agccaatgaa gaaat
//
LOCUS       KCLA01000852             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13718upu ultra-conserved element locus uce-3134,
            sequence.
ACCESSION   KCLA01000852
VERSION     KCLA01000852.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13718upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-3134"
BASE COUNT          288 a          171 c          144 g          244 t
ORIGIN      
        1 acgtgtccat ctctttcaaa cgttatgtcg tgcagagctt tacaggacat tgtgctttcg
       61 aagcaggcac gctctcttgt gcatctccca ctcctaaaaa gagaactatg aaatctttga
      121 gttctattgt ttgtatttaa aagccctcaa gcatcttcct ttgtaggtct gaatgtacac
      181 tgcaattaag catacattaa gcactaaatg aaaacaaaag gcatttaatg ttaattacac
      241 tggaaagtca ccatattgtg atcatacaca gcaccactct ttctgcccag ctagatatcc
      301 cactttcatg caaacaacag agctaaattg aattacataa aaagaagcta catactgact
      361 cccagcagtg tgttttgaca aaacactttg tctactcaaa tgatttcaga tgctgtagtc
      421 aaaagccttg actgcaaata atgggttcat aaaacctatc tttaaaattt tacctgacag
      481 taatgctgtg caaatatctg cacttctact tcaccttctt cacttgttta catcaggttt
      541 ttaatagagt ggctgtcaca gaacaacagc taaaggccac tgtttgataa gttgccataa
      601 aaatagactg cttaaaatga gaaattcctt cctaaatgca gtcatcacaa aaaggtggtg
      661 gtcagaaagg tacccaagaa agacggtttc tagaagattg caataaagcc ttttcaagtt
      721 cagtgacatt ctaaccatcg atgactttct gagaaactac atttcccatc tgtctttggt
      781 tctacagaga aataacaaaa accaggaaaa tagagaaagg agagagatag atagatagat
      841 agataga
//
LOCUS       KCLA01000853             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13734upu ultra-conserved element locus uce-1766,
            sequence.
ACCESSION   KCLA01000853
VERSION     KCLA01000853.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13734upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-1766"
BASE COUNT          258 a          168 c          162 g          183 t
ORIGIN      
        1 tagctcagcc ctcagttcat atcagcatta catccagtag gttctggcat gtagcgcttg
       61 ctcagccctc agctcatatc agcataaaca cttcatcaca gctgacacgc tgatacgcta
      121 aatgagtaag tgcggtgcac aaagaggtca cagagaagtt aactaaaggg attataaggg
      181 acagtcaaca cacttcaaaa agagaaaacc tgataggtgc agaaaacatg gtaaatgagt
      241 ctgaagaatg caaaccctcc gccgtgcact ccattacagc cctgacagtc cagttccaaa
      301 cagttaaata tgaaactgtc aacaagggcc tgtcttaata accaaacttg aggcctttta
      361 tcctggaaga tttatgaagt aattttaaag aggcccaagc aaacatctgt caataaattg
      421 aatgccggct acaggattta caagcaagac aagaatttct cattaagtgc acattagcac
      481 tgtggggatc ataaatagta agagggcagg atgctgagcc tctcaagctg tcattaaaac
      541 actatctaag aactaatgag gaagtgatgg aaggatacta atgattcctc tggctccttt
      601 cattcagcag cgaaagagga gcatgcaata cagagtttca gattgccacg accaaaggtc
      661 tatgatagac tagagaggtt ttcagagaac ctctaagcct ctgttactac aatcccacca
      721 gctgtacata gtgctcacta gtggaccagg aaagatgtca tcatgagttc t
//
LOCUS       KCLA01000854             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13749upu ultra-conserved element locus uce-6626,
            sequence.
ACCESSION   KCLA01000854
VERSION     KCLA01000854.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13749upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-6626"
BASE COUNT          220 a          127 c          137 g          211 t
ORIGIN      
        1 aacttgtggc agctttaaaa cccttgccat ttcagaatct aatttgatgt cttttttgtt
       61 agtcctgctc tattaattaa aatatcataa taaaaaaaaa gaatactgca tctttaatga
      121 tgtttttgtg cccgtgtagt taagctttaa tgctagggag ggaaaagatt aaattagcct
      181 tgtaacctct ttctcttcca gaccgatgat ggaaaataaa agctcttagc cacagaatgt
      241 aacacttaga attaatattt aattagacca gcaaattgta caccggggct gaaagcttcc
      301 aaagagttgt tagtgccaca attgacctac aagtttaata ataactcact tctaggagca
      361 agtgccagtt cagcatagtg gagccactgt aagaaagtcc tgggagatta aaatcagcaa
      421 accaaatggc aggcgaggat tcctgggatg gagccttctg gaaagctggg agctggagta
      481 gcttttcagc caggattcag atgagaacag tgggcaaaaa aagctgattc ctcctgttcc
      541 gggagcgtct ggttgtaggc caaaatccta gaacagattt tttctaaatg ttcttactgc
      601 agctattaat ttctatcacc aatcaagtga caaatgacct attttcatct cttaattaag
      661 ttctaatata aacattatcg ctgaatttgt tggtc
//
LOCUS       KCLA01000855             984 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13764upu ultra-conserved element locus uce-5451,
            sequence.
ACCESSION   KCLA01000855
VERSION     KCLA01000855.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13764upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>984
                     /note="ultra-conserved element locus uce-5451"
BASE COUNT          264 a          221 c          227 g          272 t
ORIGIN      
        1 tggctcccac tctgcaaagc acgctctgca tattgtgttt cggtgtaagt gaacactgta
       61 gcttcccgca ggggtgttac gtgctgccgt gtgctaagag tgagggttgg gatgaaagcc
      121 ggtccttgag gtgctttttg agagcttatc cgtacagagc tgagaaatga accaggaggt
      181 gaatttacac cacctcagct ccacaggtgg gcactcttaa catgcagtaa gcacggggaa
      241 ggtactccgt gtggcgaata agagggcaaa tactccacac aagccatgct cctgcgagga
      301 cacagtgctg cgaggctgag ggtctgcagt ttccctctct tgtttgctcc acgggcagac
      361 cttaggactt cagccacact gtaaaaatta ataccctgca catgtctatc tgggagggtg
      421 tcggtggttg tcaccatggc acagatgacc ttaccaactg cagcgacgga gccatccatg
      481 gtaaatactg gacaattctg acctgttaat ggttggcaga ctatttgatg acagttgcaa
      541 gaatctgatg cacagcagta tcctttacag cagtttaatc tttgtcatca aatcccccgg
      601 cagtcgtgat taatagctgc actcgggctt gttttgaaag ttgtatattt ggcagctctg
      661 aactttgatc tatggtttcg cttgaaagaa tcattatgac acaaactttt cctgtaatcc
      721 ttccatctaa tgaaaccaca cacaaatact acgtggggaa atacgatgct attgatataa
      781 gctgtgtgtt tattgcaata ttttaggcac tttattaaag ttgatagttg ttcccagcac
      841 gatagtagat gagctcccca aaacaataac atcacccagc aagaatatag aagagaattt
      901 cccaaggcca aatcctatta gaaactttct ttgttgatta ataccatgcc cttgaacccg
      961 ttaagggctc agatgtttta acct
//
LOCUS       KCLA01000856             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13780upu ultra-conserved element locus uce-3084,
            sequence.
ACCESSION   KCLA01000856
VERSION     KCLA01000856.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13780upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-3084"
BASE COUNT          169 a          110 c          139 g          143 t
ORIGIN      
        1 taaaatttcc cctaaaagcc cccaatggaa attcacttgg aaaagatgca agctcactgc
       61 aagaatctcg gggtgcgtct tcacgttaaa agaaaaaaaa aaggggtagt ttttttgagg
      121 tgtaaccagt agggaaggcg ccagagcgct gctgggaggt gctggggagc gacggcaggc
      181 tcgagcaccg gcgccggagc agatgttctc tacctgcctc gttactaatt tcaacaagtg
      241 ttcgccttct agctgctgcc agcaatggca tggtttgtta ccatgagcaa ttttcttaat
      301 taacagacat taattagcca tttagcaatt ttgcaagcat ttgtttagca gctttcctaa
      361 acatgaatac cactgtgata atggtactga ttagagggtc ccctaattaa cagtacaggg
      421 aaggaaaatt gaaatcacat aaattaagaa gggaggggaa gttaatgaag gcaggacata
      481 tttgcacctg caaagctttt gtacagcgca aacttgagtg cgatggaaat aaagggggaa
      541 gaacgtgtcc ccctcttttt t
//
LOCUS       KCLA01000857             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13795upu ultra-conserved element locus uce-7690,
            sequence.
ACCESSION   KCLA01000857
VERSION     KCLA01000857.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13795upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-7690"
BASE COUNT          255 a          163 c          163 g          257 t
ORIGIN      
        1 atttcctcta tttatttatc ctgatttatg cgcccactca gtttaaaggg gcacctgttc
       61 tttgctcgag ggcatgtctc aatccatttg cacagcagtt tttaggggaa atgcttgaga
      121 ataatcagaa atagtaagtt cccatagccc tttttcttag ttaagacagc ataaactgcc
      181 atttccagtg tgacagtcat atctgtattt cacttataaa tgcagctatg ttacggtgta
      241 tattcatatc tttccagagc aaattagggg aaataaccat ttgtcttcat tgcagacact
      301 tttgtatgta tagtagaaaa caaacctcta ttcaataact gcacagaggc accattaaaa
      361 tcaaatttac agtaaacaga acctgcagct ggggtaaaac actaactgtt agtattttaa
      421 ttatcagcga agcttttgga ggtctaacat ctgctcatag ccaaatgaca gcagctgctt
      481 gtgtacgctc aaaccaatgt gaattccttc tataaatatg aaaatgaatt gtatgctgtg
      541 tgttcattgt ggctatgttc ctatgaagct tgcccagtat atggggtatt ttgaacctct
      601 ttctcctggc aaattcgtaa aaggctgacc tcttcaaaag aatgagaggc aaagacagca
      661 aaaattcttg agtctgtaaa ttgaaaatgt ttagagacag tactagaggt caccctctgc
      721 caagacgttg ctgctaaatg ctaacaaaac atcagagcta agttctgatc actgtgcact
      781 gtagtaactt caaggacagg acttctcagc atgcaaggtg tcaggagtct atgggatg
//
LOCUS       KCLA01000858             533 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13825upu ultra-conserved element locus uce-1072,
            sequence.
ACCESSION   KCLA01000858
VERSION     KCLA01000858.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 533)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..533
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13825upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>533
                     /note="ultra-conserved element locus uce-1072"
BASE COUNT          181 a          125 c           93 g          134 t
ORIGIN      
        1 gacacaagtg tttaaagaca ccaggagtaa ttacaaatgt attattcata cctaatttac
       61 aagatgaact tctttcagta aaatattaaa ctgtttacat gcattcaaga cgacaatttc
      121 ccaacccttc gcgtcccgct ctgaacggtg actactgcta cgcgacgact ccgcagacgt
      181 acagtgtgca ccatggagta atcagaaaat gtttgacctc agatatctac ttgaccccac
      241 agaaatgcag actcgctcgc tataaaatcc taaacaatgg ggcagacaag gtcagagggt
      301 caaagcaagt attaacaggt cattgtgcaa cccacttggg agcaattact tctggtcacg
      361 gctaagtgga cacttgattg aataccacta agacagctca catcccacag ataacaatcc
      421 tcacagcgat taagaattaa agcccccatg attcagcctt tattactcaa atgaacctaa
      481 ctattccata aaaaactctt ggtatatgca tgatgcaagg tctaaattga aat
//
LOCUS       KCLA01000859             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13841upu ultra-conserved element locus uce-4885,
            sequence.
ACCESSION   KCLA01000859
VERSION     KCLA01000859.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13841upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-4885"
BASE COUNT          244 a          195 c          190 g          263 t
ORIGIN      
        1 tctcctcgct acaccagaga gaaatgcaat agcttggcta aggtagacag agcaaaatac
       61 agagaatagt tgctccaggg ctttgaaacc cctcaaggca aggatcagga tacaattagc
      121 tcatgtctct acctccagtc tgaatcaatc tccgaaataa aagttaaatt aaattaactg
      181 atcacacggg cataaaattg atctccttcg aaacgtgcat atatatctct atatgtgtgt
      241 ttggtgggaa aagcagtctc attccagcct ccaacttgct ttttactctc ctcttgcaca
      301 gaaaagctga ttttaatcgt tgtgattagt tttgatgtaa cgtttccgcg ggcgatttct
      361 gcaaatggat ggagtgtttc tttgccagaa gagggaaaag cagcagatga tgataattat
      421 aaggattgtt ggttggttgt ttcttttttt ctgtctccct cttgattttt atgtgtattt
      481 agggctggtt cctcactttt ccgagctgac ctgacattgc cactgcgctg aggtcgccct
      541 acttgttgat taggatcacc tcccgttccg atcgaggggt atgtgataat ttggcagtgg
      601 agcaacacat ttgccgttcc cttggctata gaacttccca aatgacgtgt ataaaaataa
      661 gcacatggag cctgctttgc cccaatccag tctgaatcga tgcctggggg tgagacacaa
      721 actcatttca aatgttcaac catgcagaat tgcaaaaaga ttgaaggagt cgcgctgcct
      781 cctttattat ttcttgcaaa gcagcaaaat taagaggaaa taaatccatg gaagcaaacc
      841 cggaatctcc ccgcttgtgc tcatgtgaca ttgctcacaa atgctcccga ct
//
LOCUS       KCLA01000860             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13857upu ultra-conserved element locus uce-4818,
            sequence.
ACCESSION   KCLA01000860
VERSION     KCLA01000860.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13857upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-4818"
BASE COUNT          116 a          109 c          115 g          141 t
ORIGIN      
        1 ccgcgctcgc cctcttcccc ccgttccctg ggaagcaaag gtcaccgcct gcgcccggtc
       61 cggctcccgg ccgctgcaga gctggaaatc aggaagcaga gtgccctatt tgtcaagcgt
      121 ttgacagctg agttcattaa ggcttaaata agaaggaata aaagtaaaaa acgtttacgt
      181 accgggcgtc tctttttcgg cagctaccaa agagctaggt gtgcagagaa ggactgcacc
      241 ctttgtatat tatattcttg ggatctcttc agttttcaag tctgatagag tcctttgctt
      301 ggcagattaa tgacgactcc gtgtttctta agggacgtgc tgaattaatt atttcgcaaa
      361 tcacgtggtc aggacttgta gaaatctatt cttatcatct tccttgtact ttgaaattct
      421 gcctgttatg actgttccta gcaagattat tttggtctct aggcttgggg ggaaaaaagg
      481 a
//
LOCUS       KCLA01000861             858 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13873upu ultra-conserved element locus uce-7460,
            sequence.
ACCESSION   KCLA01000861
VERSION     KCLA01000861.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13873upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>858
                     /note="ultra-conserved element locus uce-7460"
BASE COUNT          189 a          197 c          228 g          244 t
ORIGIN      
        1 ctgctctgta acctcaggaa acccgtttgc ggttatttat agcggttcgg ggagcggtca
       61 cacctgagcg aagggagcgc tctcagtgtg cagtgcttgt ttatgcagag caggctgtca
      121 gcgcccatgt caggcgctgg cgtgcgtctc tgtcggcagt gttttaggga tgttccgctc
      181 cccctctgaa ttattacgtt tgcagttagg agatggcacc ctgcacccgc tgcagcttcc
      241 cgccggctcg catcaccagg ttctgtgctt cgggaaggct ggcctcagga tttcgtgttt
      301 gcagtcacag attaaatgat attaaacact attacacttg aaagatttgt ttccgagtcg
      361 caaatggatt ccccgtatta ttctttgctg taagtagttg ttgttatatc ttattcatct
      421 ggaaaataat ttcaaacagc catgaaaata gtggatttct ctctgttaaa atgatcgtca
      481 gagcctgggc cgctgacata tagtaacatg attcacttgg acagttactg actgcacatc
      541 caattcattt cttctctgga gcaccaagtt attatctgaa atgcacaagg tgtctggggg
      601 taacatatga tcagccaggg acgcttctga cggcttgaag agcaatcaat aaaaattgtc
      661 tccagcagtt ttgtggagta tggaagttgg tggtgagatg aagtgatgga gattaactag
      721 tggaagtcac tgccccggtg ctgtgaaccc tgttttttaa ttaaagatcc aaagccgctt
      781 ttcaccggcg tggggtttcc ttccccgtgc cgcgctgggc gctgggggag aacgctccgc
      841 ggcggtcgcg gtgcccgc
//
LOCUS       KCLA01000862             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13888upu ultra-conserved element locus uce-2992,
            sequence.
ACCESSION   KCLA01000862
VERSION     KCLA01000862.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13888upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-2992"
BASE COUNT          160 a           81 c           90 g          155 t
ORIGIN      
        1 aaatatacat ctaatttttt cagctctgca atatgaattt acacaaatct tttaggtttt
       61 ttatcttctc cgcactgtaa catctgattg gctggtgata caatacttgc agtgtaagtc
      121 attacaggtc tgacgttaca gttgttatac attgctgaat ctgtcaaata taaagggagc
      181 acaaacggaa tttccaaatg cagctgctat ttcccatttg ttaaatcctt ttattacacc
      241 atataagtac acagctggga aatactatag agtgggagtt aaaacaaaat attttggctt
      301 ccagacattc agaatacaca aagggctcag tggaaagcaa tgcctgatat caaaagggag
      361 tgaaagtttg aaaacatctc tagacatgtg ggttttttat gttactacac aatgtagttt
      421 aaaggttacg atacagaaag tgctgcatac cataaatgtt gggaaaatct tttcagtgaa
      481 gttgcc
//
LOCUS       KCLA01000863             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13904upu ultra-conserved element locus uce-6157,
            sequence.
ACCESSION   KCLA01000863
VERSION     KCLA01000863.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13904upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-6157"
BASE COUNT          246 a          189 c          166 g          232 t
ORIGIN      
        1 agtaagagtt aagcaaagca gcagttctag ccatccaaaa aagatgcagt tgtgtgcaca
       61 agaacaccta atgttcacac ccacctagaa gggcatgcgg agagggaaca gtgcgcagca
      121 cacaggacac acacagcagc atgagccacc catggtcctg tcagaaacac accacaggac
      181 atgaaccatc ctaaatttct ccttgcttat gccaggtccc agtataacca ggttcctgca
      241 gcaggctgcg tgagctggga agcagccctt ttaacaaccc cggtttgtaa cagaaacgtt
      301 acagcagttc ccatcaaccc ggatgaaatc tgaaccggct catgcaaggg ttaaaaacag
      361 aaagtgctgg tttgcactga tgttcctgta gatattgtca ctagatgtat cctcagtaga
      421 attctattca acacctctgt ctttaagtac aaagctgtag gctgtagcag ctttaggaaa
      481 cataagtacc cttttttctg ctgcacagta tctgtgtgtg aaattctcta aaggggttta
      541 agtatttacc ctgaacacta tcagacagtt tctaaaattt tccttatcct gttgcagaaa
      601 cacttcaaag agaattgtaa acacagtcct ttgtgctttc agcacacact ttgttttgga
      661 agcttaagtc tgaattccct cagaattgta aatgttcttt ttctgataga tgtgccacac
      721 aacttcactt tgtttttttt tttttgaaag attgtgagtg attcagctac acaccatgct
      781 gaagagcttc cctcatttct gacagttaca aatattaggg tcaaagcaat gag
//
LOCUS       KCLA01000864             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13918upu ultra-conserved element locus uce-6509,
            sequence.
ACCESSION   KCLA01000864
VERSION     KCLA01000864.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13918upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-6509"
BASE COUNT          209 a          128 c          132 g          202 t
ORIGIN      
        1 ggattcacaa atcttcgaca ttgcctgtgc ttcactaatt ttgcaccaca gttttgcagt
       61 tgttccagcc atctttcgat cactgcatgc agagatgcga tgaaatccag atatattatc
      121 aggactttgc catctacatc acaaggtctc cataatgcca aatcacctga gtatgaatag
      181 ttgaacatca tgtacaattg agccacatga gttcatagta aatgtatttt gataaaccca
      241 acaaaacaaa acaaaccaga aaattttata tgaaatcagt accttgaaat accaagatgc
      301 ttttctgtgc ttgaaaatag agtcacctac ctgcttgtta ctgtataaat atgaatattc
      361 tgatgaaact ggtgtagctg ttgctttttg ttgctcagtg ttttcagagc ttgggaacag
      421 atggtgcacc acgtgactct gcacactaat gtaagattca ttgtgcttca caggaaatca
      481 aagatcaagc aacattgcaa aaggtgaagc agcacctcag caaccagcag cacagtatga
      541 tacagtcaag tggtggagca agaaaatagg gagataatgg gggagaaagt agaagccaga
      601 aatatttggg ttttgaggat tattttgcct tctcctttta ttttctgcat tttgctggtt
      661 ttttttagcc c
//
LOCUS       KCLA01000865             354 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13932upu ultra-conserved element locus uce-6522,
            sequence.
ACCESSION   KCLA01000865
VERSION     KCLA01000865.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 354)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..354
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13932upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>354
                     /note="ultra-conserved element locus uce-6522"
BASE COUNT          106 a           62 c           54 g          132 t
ORIGIN      
        1 ttttttttta caaaagcatg ctgtctttca attaacatag taatgaccta ttgtcacctg
       61 ttaccatgct aatcctgagc tggtgtgaaa ttactttata ataaacacta tggagttctg
      121 actttcaatt aatttttcac atgctgtgct aaatcagatt aagtataccc cacccttttg
      181 accacagaca taattccttc cttataatga aatagaggat taatttatat gaagcatatc
      241 tatacacatt tgcaaatgaa tgtaaagata gatgttgtac tgtatttgca ttgcttgctg
      301 tgtcaggttg aatacagcct ttccgatatt attaattctt ctgatcactg gggt
//
LOCUS       KCLA01000866            1002 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13948upu ultra-conserved element locus uce-5822,
            sequence.
ACCESSION   KCLA01000866
VERSION     KCLA01000866.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13948upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1002
                     /note="ultra-conserved element locus uce-5822"
BASE COUNT          332 a          205 c          177 g          288 t
ORIGIN      
        1 aaaatacagt agaaaatagt tttcattaag tagacctgct ggggaaaaaa accgcacaca
       61 ccaatgatta agcatgaatg tgcatctgtc ctctaaatac tcagagcagt aatagcttaa
      121 acgcagggtt tcaaatcatg gctcatcatg atgcgtatac aaatctgcat caggcaacac
      181 taaattaaga agcacctcca ataagtttac aaaaaattgg ttgtaaactc ctctgcattg
      241 caaagatctc ttttgtctgt caatcaacag aaaagtatta ttccaccatc acaaaaggca
      301 aacctttgga ggcagtatag gtctgtgtgt tgtgcaaatg tgcagttgct aagaagcaaa
      361 tatgctcctc ttctaatcaa atagcccagc tcagcaatgc tgctggcttg gggcaagaag
      421 caaattccac cagccacaaa cttagaaaca gtcttgaatt atttgttgct gaccgctggc
      481 tgaaccctgt cctgatgagc accatcacca ttagccactt ctcagtgtat tccatcaacc
      541 aatggcaata gcagcatgct acagctcagg ctgcaaggaa ttgatcaaac agggtaatga
      601 gactatttct tcatggaggt tattttaaat gaatataaat attttctttc tacataattt
      661 gccacaaaag gtcactgaac tccctgcgat tctaaagaaa aatgctgtgg catctccttt
      721 atatatttga gttaggatat agccaacaaa caactctggg catttttgat gatcgtgtaa
      781 atcttaatga ggtggcatcc cagacaactg attagccgca acattttatc ttcacattta
      841 gttaagaaca aaaagaagat ttgatgctat tttacaaaat catgatatac ctacgccctt
      901 aaagtcttcc gtaagaatat attctggtgg cctaaagact gacttactat taacaataga
      961 tcatgcatat ttagctatgc ttgctatact atgatattgc ag
//
LOCUS       KCLA01000867             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13963upu ultra-conserved element locus uce-5123,
            sequence.
ACCESSION   KCLA01000867
VERSION     KCLA01000867.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13963upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-5123"
BASE COUNT          274 a          197 c          195 g          306 t
ORIGIN      
        1 agaatgacaa gcacacgatt gctgtactta aagcaatctt tcacagctgc tttgcttttc
       61 cagtgatcct attaaattga cggcacatgc ctgtggggtc tgcagtgtta caatactgct
      121 gaacaagatg ttgattgtac actgtaaatt tggacaacac aacttggctt tatgggagga
      181 accacttgtc gggccatcct cccacttctt tttaatctga gcaaaatttc atttaaaaac
      241 ttctctatcg ctgcagcctt taacgaacac ctggttatct taatggttta gaagtgcaaa
      301 ctctagcgct cagtggtcag caggcatgaa gaatgctgaa gtctcctcag ctcctgaaat
      361 gatcatgagt catgtctttt ctgcaagtga acgaagttgc tgtgcattaa atatgctggc
      421 acatcttctg cttgagcaag tggaccgaaa tggtgtgaat tgttaatgcc ttgctgcttt
      481 agttcacggc ttgtgattga tcatttgtaa ctatatctac tccttgttcc atgaaatcaa
      541 gtatggagta atgggttcat cagatttttg ggttaaattg agagtgaaga ggtactgtgt
      601 gtggaaataa gagttgccat gttcggggct ggccttgtaa cagcatggaa tctaaaggcg
      661 atattcaaaa ccacttcact catcatacgc ttactgattc tgaatagggt ccatttgcag
      721 gggacatttg gtaggtttcc aatacacttt atgcctcttt ctccacttct accaccctgc
      781 acttttttct tactagaatc tcttagaaca ggtcagctta gaaaattaat agattcaaat
      841 aactccttat ataaaagtag aaatagcctg agacaactat cctcctgcat attaatcaca
      901 ctgcctaaat attaagtcat ttgcatgact caggctataa aggagacagc aaagttttgc
      961 ttagcattca ga
//
LOCUS       KCLA01000868            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13979upu ultra-conserved element locus uce-7479,
            sequence.
ACCESSION   KCLA01000868
VERSION     KCLA01000868.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13979upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-7479"
BASE COUNT          328 a          204 c          198 g          280 t
ORIGIN      
        1 ccattcttta cttgtttcct actattaacc cccaaatcat tggtcctttt acaaagtaac
       61 acgaccagac agatggccta gtcagggtgg ttgcagtgtt taaaacccag cagctttcat
      121 aacctcagct ctggccagtt agaacaaacc agagtcgtga tctaatttgc gcatgacatt
      181 cgtgttgaat tagaggccgt gaattaaccg ccttcataca cactgcacca atatttgtga
      241 aacatcaaaa atagaatatg gaaatgagca aaatacatga gtaattccaa agaatttggc
      301 ttttaaaagg ttacacacac ctcctaaatt ctgagtgcaa ggaaagcagt gcagtgcaat
      361 tacgctagga gagctgctgc cgcttataaa acattgtgca gctgttggag gagagggtta
      421 cagtgacaaa cagcttccct gctacaaagg tggcaggaaa tctatcaaac tggacaataa
      481 aattgcaatt gagtttcttt gcctttttat agcagctgca tgtatcttgg tgcgtagctc
      541 tgcaaaacct atccgattct gtaacaccag tcctttatgc actggttctt tatcgcaggg
      601 cactgttata aattagcaag agcagcgcaa agggctgtaa aaaaggaaaa taagtagtaa
      661 ccccttacaa ttaaagatga aaatatagaa acacaaatca gttattctct caggcaatat
      721 ttttgttccc agaatccccg cactacttgg aaagcacgct agaaatccaa accatctgag
      781 atgcacttag cggccaacaa tttgtccact gaattctgtc agagttcagt tctgtctgag
      841 tctgtagtat tctcaacaag ggtatgacag gatacaagaa tatacatcaa attagaggga
      901 ttaaagcttc attatcagag gacactaata gcagctcacg aggacatttt caaatgatta
      961 ggaaggtttt agcacaaaga gatttttgat gatttatctt aatttatgct
//
LOCUS       KCLA01000869             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 13994upu ultra-conserved element locus uce-2646,
            sequence.
ACCESSION   KCLA01000869
VERSION     KCLA01000869.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="13994upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-2646"
BASE COUNT          258 a          124 c          158 g          161 t
ORIGIN      
        1 aggaaaaatg tgaaaaaaac aaaaaagaga aagaaaaaaa gaaaaagaaa agagaaagac
       61 agtaagagaa agacaaagaa aaataaaaga caaagagaga aaaaatagca agaaggggga
      121 ctgaatggga tcaatgtatt ggggtgaaag ccaccctggc tgcagagatg caaatgtggc
      181 ctctccgaag tggcgagcac caggagcgac tgtgtattcc ttacacgaga cagttaaaaa
      241 tttgaacata aggtagcatt tcctttatca tatcccataa aaatagcaat ttgctaaagc
      301 ccttgtagca cagtatggaa ggtggtgtat tttactgata atgtagagat gacagatagt
      361 cctatactag gaggtttcaa tggtgtcttg gtgtatagca taataaattg tgaggagcag
      421 agacagagga cagtgcagac actgctccac ctccagtagc caaataattc agccccagct
      481 cagtaattat gctgtgtgaa aatatgggat taattagact ggtacactaa cacactgtag
      541 tctcattaaa ggctgagcag cattttcata gatactgcca cttgaacagg gctgctgcta
      601 atgtgaaaag acaaagtctc ctcttttcac actccttgct tattatctta cttaaggcca
      661 cttaagcaaa cttccaaagg cagcctggca gagagccctt t
//
LOCUS       KCLA01000870             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14010upu ultra-conserved element locus uce-2003,
            sequence.
ACCESSION   KCLA01000870
VERSION     KCLA01000870.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14010upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-2003"
BASE COUNT          217 a          132 c          134 g          245 t
ORIGIN      
        1 aatggtacaa gttgctcctt aatactgtta actgtgcaag ttgcaaccac cagcaaaagg
       61 ttggcaccaa tgtaaaagtc ccctctgttt acagcagatt ttggctttgc tcagggagct
      121 gcttactgca aactttaggt ctctaattac acaaagcagg agctggatga tgtcaggatg
      181 tgtgtttcct ccctttcatc tgaagacaag tgacaagaat ataagaagcc ggatttcccg
      241 tgaaattaaa tgagacgttc caacgctgtg agtttaggaa tggccttttc tttttttggg
      301 ttggtgtatt atttatccaa tttttataag aacattattg ctttaagaaa aaaaccgaaa
      361 ccctgagaaa ttactctcag tctaacgagt tcttttccac tgactacaga catcattagg
      421 ggatggctat agcctgaggc tgtgcatgaa ctttttcttc taactgtaca ctttatgtat
      481 aatttagctt tcttgcctaa attattcagg caaatagtga gtgaaaataa tggagttcac
      541 tgaaacctta cacagtatta aaataaaaga gttttttacg ttgatttgaa tttttaagct
      601 ttttaatcat ggttttgaaa tggaatacgc atgtctttgg ttcttctctg cttgtccccc
      661 cctcttcttc agtagaagaa aggaaatgaa cttcaacaaa tatcccatta attaataaat
      721 gttactta
//
LOCUS       KCLA01000871             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14041upu ultra-conserved element locus uce-4549,
            sequence.
ACCESSION   KCLA01000871
VERSION     KCLA01000871.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14041upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-4549"
BASE COUNT          177 a          130 c          122 g          186 t
ORIGIN      
        1 aaacaactga cacattagtt aagagacctt ccattttact ttggcggttc acgataatgg
       61 aatttaattg tggaaaaagc ggaataattt tagctgaatg tcatttggtt cattcaaact
      121 gggaatcagg gacattttta acaaaggttt tcaaacttct tttgaaatca ggaagctgct
      181 gtgcacagat aaggggagag gtttgaggat tctctatcgg aaatttcaag gttttttcca
      241 tctgcttttt cacattaact ggtaattatc cagaaaggca cataatagtg cagaaatgac
      301 agaagctgac aaaggttttc ctaagatatg taaattgtca gtgataggca aggtgcaaca
      361 gaaagccttt ctacagcaca atcatttatg ccagttccat ttgcttttag gtagcacgga
      421 tggcgcacag caccgcggca tttatcacag ccattgcaca gcccctgcac caccaacaca
      481 tgggagacac cgagcttgaa ggttggtggt ctcctccaac accactcttt catattaaat
      541 cctcctgcct ggttctatag tcttgtttat tatcacagtc catttctctt tcccactaga
      601 acagcttctc tgtgt
//
LOCUS       KCLA01000872             448 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14057upu ultra-conserved element locus uce-278,
            sequence.
ACCESSION   KCLA01000872
VERSION     KCLA01000872.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 448)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..448
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14057upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>448
                     /note="ultra-conserved element locus uce-278"
BASE COUNT          118 a           71 c           97 g          162 t
ORIGIN      
        1 gaagtgtgtg tgggggggtg gggatggggg ggaaccaaag tattttaatg tgaccttcat
       61 ttggcatttg ttttaacttt tcttctcctc ttttatttaa ttcttccact tctgttgttc
      121 aattagtgtt tgaccccttt agcagagatg taaattaaat gacatttcaa tgccatccca
      181 tatttaaaat actgtgttag ttgtggatca taaaggatga tcttcgttct ttagctaatt
      241 tattcattta acaatttccc tccagaagtt ccagcagaag gctctgaagc aaactaagca
      301 gaagaaatcc aagtcggctg aatttctgat gggtgagcct tgcttgatga gttattgctc
      361 ataatttgtg taaggattaa ttaactaatt acagacaaat ggctgtgggc gaaattttgc
      421 tcttgcttgt cagggtgcaa tttgtaat
//
LOCUS       KCLA01000873            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14072upu ultra-conserved element locus uce-2503,
            sequence.
ACCESSION   KCLA01000873
VERSION     KCLA01000873.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14072upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-2503"
BASE COUNT          323 a          182 c          208 g          346 t
ORIGIN      
        1 ttatttatac aggagacctc ccaaaaacaa gcaacaatga taggaagcca aacgaaaaaa
       61 taaagctaaa attcataagg tctatctgta aacataaggt taagcagagt ggaacagtgt
      121 atttgtttta agtgctttct tttgtcatct ccgttttgat ggttttaaag ggatttattg
      181 tgaggggaat gaagttgtgc aagattcagt tacagtaaga gggaaaactt gaggctttaa
      241 agtgacatgt ttgtatgcat ttcacatgtt gttggtctgt aggtattatt aatatctatt
      301 tttagcatca agattgtgat gcacaaggta cgtaggcaca atgtgataaa aacacagcaa
      361 tactgtttct ttcccgtttc attataaagt ttctttgacc ctgtggttta ttttcaaaca
      421 tacacgttat ttgttctggt gtattcttaa acaggggttg tttttctccc tttcagaaaa
      481 tgagcacaga tggtgattga tttttcaagt gctgacatcc ctgcttgaga aaatgttccc
      541 accttctttg tgctgagcaa gtcaggcaaa ctaacatgat gatgcgatca tcagtttcat
      601 gcagacatgc agaattgatt gacagggaaa attttaacat aaaccacaca ttcttccagt
      661 gtcttcaatt ttttaatggt gtttatttgc aggatattag cagcagtggg gatttcattt
      721 aaaagacacc taaacttatt gcagcaacaa ggttaaattg agaattttgc tgccctagcc
      781 ctgtgcatat cagtacaatt tgtaatagct cttctgagct agttctgaag ctaaatgctg
      841 tcactggcta actagccatt ctcaggccat tgcttctgtt tgcgtgacta aatacataca
      901 attaaagcct agcactttca ttctctatga actcattgtt atccagggtt caagtactca
      961 gataatgggc cagaagaaaa caggcatatc atcaacccac agtggcagaa aactggttgg
     1021 taaaatacat ttctcattat ctgatgcaga atgaatggt
//
LOCUS       KCLA01000874             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14088upu ultra-conserved element locus uce-4881,
            sequence.
ACCESSION   KCLA01000874
VERSION     KCLA01000874.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14088upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-4881"
BASE COUNT          204 a          156 c          158 g          219 t
ORIGIN      
        1 cataatgctg tgacttagca atgttacctc aagcagtgca tttgcagctg atatttagca
       61 acgtcagtgt tctatttgta aaggtgattg tgtaaagcgg tggtcttgat gttgtactct
      121 gaagagaatg tttgtctttg atcacagtcc aaatgatgac atgcttggta gacaaaatac
      181 tgcagatagt cagaaaaggc aactgcttcg gagtacatgc tttaaactct aatgcatcag
      241 ttaattcacc agcatattta ctgggagaag tcctaaaagg gttaagaagc tgctataaga
      301 gaggctaaaa atgatagact ggaagaaaaa gaggtagtaa aattgaggga tataaaaaag
      361 cagaggaatg tggctgggga ataataaaat aagagagagg agttaaacca gtgacccttg
      421 tcggcagtga aaagcgggag attagaaaat gtttcatgct aatttccatg gagatttctt
      481 taatttatcg aaaattactt tcttctgctt tgatttgtcc aactgcctgc cccctcacag
      541 ctttttcggg gtggtcctac ccgtcacgcc atgctgaata tgggcctcgt ttgcccccac
      601 actgggccaa agcgtcgtga gattactgaa gcgtctctga cgtctctatc agcttgtgcc
      661 accacaatgc cctattccct tttctctctc tctctctctc actctctctc acactctctc
      721 tctctctctc tctctct
//
LOCUS       KCLA01000875             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14104upu ultra-conserved element locus uce-7499,
            sequence.
ACCESSION   KCLA01000875
VERSION     KCLA01000875.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14104upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-7499"
BASE COUNT          172 a          163 c          134 g          177 t
ORIGIN      
        1 aattcacatt acaccgctca ccgtaagcag cagacgaccg gctccccgtg aaaaccgcgc
       61 cacgcggcct ctaacgctgg gagttcactc attgctttgg tgataaaaca ttcccagcat
      121 tatttttcta gggagaaacc catctcggaa acaatgggct ggggacccac attcccttcg
      181 tgctttaggc aaacgacgcg ctcccgatcg agagcggtgg aaggagcgcc cgtgccttgt
      241 gggaatgtat ttttcccatc tacccataag ttttagtttc ttccttcttt ttttttttta
      301 agcaaagcaa ttccaaactg taagccacga ctgacccaac tccttattaa aaatgctaat
      361 atgcttttgt gctttgatgt ctggtgaaca ataaaaggga gagagttact ctgggacact
      421 gtaatccttt atttgtcact aagttatgac acccagcaga gctgtgtgac agtccaaatc
      481 aatcatcccc cgtgctctgc aggcctcctc tgcctcctgc agagcctatg cagtttaatt
      541 agcttttttt cacactagca taatgtacat ctgcagcttc agcaagaaaa agcaatggag
      601 gagagttcac tgggatacgg tgccttcaag aaaaagttca tataaa
//
LOCUS       KCLA01000876             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14120upu ultra-conserved element locus uce-3265,
            sequence.
ACCESSION   KCLA01000876
VERSION     KCLA01000876.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14120upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-3265"
BASE COUNT           81 a           50 c           46 g           79 t
ORIGIN      
        1 gaaggtgcct taacaactat ttgcttcgta gagttcataa atgagcccct caccctatac
       61 cagaactgct ataattttat cggaatgaaa accattctct ttgatctcct ccggttctta
      121 aatccagcag ttgtgtattc aaacatcaat ggaaatgtgg tttcaagctt cctctttcat
      181 tatctttctc aaagataaaa aagagcaaaa ggaaagaaag ttgtgagctg tagggatgag
      241 gcaatatttt cacagt
//
LOCUS       KCLA01000877             920 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14136upu ultra-conserved element locus uce-1703,
            sequence.
ACCESSION   KCLA01000877
VERSION     KCLA01000877.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 920)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14136upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>920
                     /note="ultra-conserved element locus uce-1703"
BASE COUNT          274 a          182 c          168 g          296 t
ORIGIN      
        1 acatactatt gtcagtggtt attaaattct caacttttta cccatccaca agagactgtg
       61 caaagatatc tgagggaagt atgagttcag cttgctgtcc aaggattatt ttggataaaa
      121 cattagtggc catcccagcc tggcgcttat atctcatttg aaacatctac tcattcctga
      181 ccaacaaaga aaatttcaat aaagtacttt tactggttta acagcagtga gctccgggga
      241 tcatcaaagt gctcagtctt ttccaaagag agaaggaatc agcagctcaa atataattaa
      301 ccttccattc tcaatgcaaa ctgccacgca caggagctct acagtctatt agtggagtta
      361 taacggccaa caggcagagg caaaattggt caaaaagttg gctgctgctg tcatattttt
      421 agaattatga ttaatgacac taataatgtg gatgattact gatatgtgta tctcctgcag
      481 tttatcatat tgcactggct gcctacgtcc acaataaaca tgatgctatc atttacctct
      541 ttattgaagg caatccttct cttgaaggag cacattctaa ttactttgta atgttttatg
      601 ttttaaacat tttgcagctc tggaccttgc caactgcttc atgtctacca ttgattaatt
      661 acggaatatt taatcaaaat ttagaaccta atgcagtcat ttatgagcgt gctgcagtgc
      721 caagatagtt aggctgctgt cccaagcttg gagagtgctg agttcagaat gaaatcccag
      781 aaatgtggaa gatgccaaag attttacctt gagtgatttg agtttaaaca gacactcacc
      841 caaaacacaa gttctttctt gtgcaggtat gtgttcttgt gtattcttat tacatctcct
      901 ttaaatgtta attcttccct
//
LOCUS       KCLA01000878             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14151upu ultra-conserved element locus uce-1458,
            sequence.
ACCESSION   KCLA01000878
VERSION     KCLA01000878.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14151upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-1458"
BASE COUNT          289 a          185 c          185 g          262 t
ORIGIN      
        1 gttcagcata gatctgacta tgcagaacct attatataaa ctaacacaga gagaaagaaa
       61 gcaggttacg tttgtcatcc agctgcttaa ggagtaagga aatgaagtta ctcagctgca
      121 gtattatctg actttttgaa aacagtggaa gggatgtaag tgacaccaac aattttcttt
      181 taataaagca tctataaatg aggtgcacgt gttcaggtaa tcaacgtgag aataactgac
      241 aaaaatttca gatgaattgt catttccatc gattgttagg agggtgatgg tccttaatct
      301 cacatcaatc tcaatgtgcg ccactaggac aaaagaagag atgctctgct gagatcagag
      361 cagctttgcc ctctattccc aatgtacaat tacattgtgt ttgcagatgg gcatgagata
      421 gctgcggaac tgccatgatt tcccaaagct cacccccaca aatggatgaa ataagcggct
      481 atgtgttctt ttgctgtctc cctttgccct ctgtacatta gcatgtaatc cagaggagaa
      541 ataacatttt ttcaatcact cgcagacatt caattatggg gcaagcagac agctgcagaa
      601 gctggggcag tccaggtcct gtagaagacc cctgacaatt tccacttcat ttctaaccca
      661 cactgcttta ttagtgagga ttacttctta atcctattgc cattgtcaag attatataat
      721 taaactcccc tttcacctct attacagtat gaatgtatta ctcaaaccag tgagtgaata
      781 ataaaaggaa aggaaacaga taaggctgtt gagaaggaag cttgaggtag aagaggggaa
      841 gagattcaca tacagtaaaa gccactgcat tattctccca ttactttatt gtgctgtgct
      901 cttcctacac aagatctctt t
//
LOCUS       KCLA01000879             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14165upu ultra-conserved element locus uce-5745,
            sequence.
ACCESSION   KCLA01000879
VERSION     KCLA01000879.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-5745"
BASE COUNT          208 a          121 c          182 g          180 t
ORIGIN      
        1 tgttgtggca aggtatatac atccttctag tttagaggct agcttgctaa ggaatattct
       61 ttcattcttt cttgctctct tgtttttgtt tttttttcta agttatttaa tttttatgtg
      121 tttatttaag gttggtcttg taggccgact gatgagacca tctttgcctt gtctttgcca
      181 gcagggtact tattgtctcc tctagaccca tagtcattag aaccggaatc gctccgcttg
      241 ctgtttgcgc tatgcttggt tggcgtgccg gggggatggc tcacctgccc gttcttctcg
      301 tctgaaaaaa gttgtttaat tacgtcaaag aagttactca atgggctgcc tgggtacaca
      361 aaacagagga gacaaaaaaa gaaagaagaa agaaagaaaa aaacaaaaaa caagagggaa
      421 agaagagaga aagaggagag aaagagagag aacaaacaaa caaatgaaca atggggtttt
      481 taacgagaag aacatgatga ggagatccag agccacgtgc gtgggggtgt gtgggagatg
      541 aagacaatga gcaggaagag tgtttaggat gggacaccta cagaaataaa gaggctggga
      601 gcataaagca cctcagggaa ggaggcctag tcctctcctg agcaggggag cactgctgtc
      661 tcacttatca ggacacagca cagcatagct g
//
LOCUS       KCLA01000880             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14181upu ultra-conserved element locus uce-5542,
            sequence.
ACCESSION   KCLA01000880
VERSION     KCLA01000880.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14181upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-5542"
BASE COUNT          203 a          162 c          130 g          235 t
ORIGIN      
        1 ccttgtagac agttttatga gatagtcata tacctattta gcatcgctac tctttgttat
       61 ctcctgagca gaacgttatt tttccagcac catataaagt aagcaaatgg ctgctcatca
      121 tcctttttca agagtgttgt acatacaatt ctctcttggc taatagctcc ttctattgtc
      181 catgatttat cattgtcagg attctttaca tttcctcctt actttactgg aaatctgtcc
      241 attttaaaag gacagcctga atttaattag cccatgcagc atttctttgt ataggctaga
      301 gcatatattg ttttgaaaca cagaagatta tgactttcac tggtatgttt ttgctccaat
      361 tttttcgctg ccttttttaa actcttctga agtacgtacc tgggtaatta gccattacag
      421 tatcgtcaca gaggcttctg cagtcaatac agagataatt tgggcaatgg tgaataacag
      481 cattgtccac acttttggga taatcaagga cacatccagc tgtaccagac atctgtcaga
      541 gccatgaatc atttcaagta gctctgcaat agccaggcaa gtcgagcata gataaacatt
      601 gcagcagcac acagccacgg gaaaaatact gcttctacca gaaaaattta cctgcttcgt
      661 gctgcaggcc tgtcactcaa agcagaggag ttaccacaca cgtctttctg acttttctag
      721 gcacagtctg
//
LOCUS       KCLA01000881             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14196upu ultra-conserved element locus uce-7414,
            sequence.
ACCESSION   KCLA01000881
VERSION     KCLA01000881.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14196upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-7414"
BASE COUNT          287 a          160 c          162 g          268 t
ORIGIN      
        1 agattaaaga gttttgctgc aagaaatacc tatagattta gatcttgagc ctaagatcat
       61 ttattttcca atttacactg caggacataa cacatgaaga gcatttcact accttctggg
      121 taatttgttt ctcaattcca ggatagttta gcatcatgaa gcattagaat atacagatat
      181 gagttctgca accttttaaa gttgtcctat cccctgtaga ggaatgctgt aaataccctt
      241 gacagttgta ataactggac attgttagaa ggatgctaac agagagggtt aacagcttgt
      301 gcgtgtacaa aatacttgaa gttagacaga aagccattat tatgaccttg tgctgaccac
      361 attctatgaa gtgttacatg atcagggaca gggaagttgc ttaatggaag ttatatagta
      421 gctagatgta tccttgtcac acttcatcta aactgatcca ttgcaatggt ccgcactgct
      481 cagacctggc aattactgtc caatttcaat ctattccaca ctgccactat aatgaaaaat
      541 aattaggagc ctgaaaatga gttttcacat gaaatggttt cagtgcttgg acacaatcgc
      601 ctttggcaga tggctttggg tttgctttaa tataataaag acagttaatc atctctaaag
      661 agtgcacaga atgaataaac ttttaacact actttctcct ctgaaactct tatattgatc
      721 aaatattaat actgaagagt taacttttct atggatgaat gttcctaaac aatggacacc
      781 caggattctg cacacgttct gatacaccct ggggaagaat caaattaacc caaggggcaa
      841 cttcttgaca gtagaattta gaaactaata tgaaaga
//
LOCUS       KCLA01000882             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14212upu ultra-conserved element locus uce-1514,
            sequence.
ACCESSION   KCLA01000882
VERSION     KCLA01000882.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14212upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-1514"
BASE COUNT          108 a          123 c          114 g          172 t
ORIGIN      
        1 ctctcccctt gtctgttaca agttatgatg tgtggatgaa ggctttttcc catgcagtaa
       61 tgactgtata ctgagatttc aaggggctgt tcatgacaat cccattttct gtgtaatttc
      121 atggttgtct tcttgaatga agatattggc tgctctgaag caggaggtca gatgctcctg
      181 ctccctttca gtattgttcc ggagtatgtt tcctttcagc tgatgaaaag taattcatca
      241 tttacaccct tgaattctgc cagccttttt tttttttttg aacaactttt ctttccccgt
      301 ggtaccttgg gcccatgaaa gagataaata ggttcaatac agcgccgggc tccggatcct
      361 gggagcaggt tcggcctcag aggccctaag ctgccccttt ctcatgatgg agtttgtcac
      421 ctttctacct ctggaagtca aatcctgtcg actcagccat ctctcagcct ctctgaagtg
      481 gctttggcac ccactggggc atgtgagctt aaaattg
//
LOCUS       KCLA01000883             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14227upu ultra-conserved element locus uce-377,
            sequence.
ACCESSION   KCLA01000883
VERSION     KCLA01000883.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14227upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-377"
BASE COUNT          219 a          123 c          103 g          238 t
ORIGIN      
        1 atgttctcat actagtactt tacagttttt tttacagtta acagattgcc tacacattgc
       61 ttgtagtatg tggacaccac actgattaag gaatattcca aatagttaat ttatagcggc
      121 tatatatgtt tttaaggctt ttagatgcta gaaaaaatca ccactaccct cgttttagat
      181 ctatatttaa tgtatatgat acatttaaat aattattgaa gcagttgatg cttaaacggg
      241 agtccaattc cacgtctgat actgctttgc ttttcaggct gttgtaataa aaccattctt
      301 tttatagcgt gccattatta gaaaccaatt tcagaattat ttataacctg gaatggctta
      361 ttaagcagca atgcgagaat catgcaaatt atgcgatcaa atgcaatata ataagcataa
      421 tcattagtct ctagcatgga ttaattaact ttcaatattt tatttacata aaaaccaaat
      481 cagtgaaata acttctgcac agtcaggctt gcctttcaat attttatatg aacaaaaata
      541 atgtgctgta attccattga ccgtgtcccc cacaatggtc ccgtcacctg ccacatctta
      601 ataggggaca agctgagagt attttctagt tttctaatgg aatgagaaat tgcattttct
      661 ccctctccca gtactattaa agt
//
LOCUS       KCLA01000884             967 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14241upu ultra-conserved element locus uce-1858,
            sequence.
ACCESSION   KCLA01000884
VERSION     KCLA01000884.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14241upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>967
                     /note="ultra-conserved element locus uce-1858"
BASE COUNT          304 a          180 c          195 g          288 t
ORIGIN      
        1 ttaaacaaaa tacccagggt aaattttgca agtcatttaa ggatgtggta aaagccatca
       61 ctgacgactt ggtccatttt tagaacaaac tctctcaagg cctttttatc ctgccaggga
      121 cccttcccac tgcactagag ctgacaagac tgtgtgcatt actttatttt gatactgaca
      181 tttaaacaat aaaataaagc catttaaaac aaatagtggt gctttaagtg tctgagctgt
      241 caagatatca aattatataa cttggaaaaa tcagaattca ttgttaatgg tatgcactta
      301 acacaaaggg tcgctggagt actaaccaga tatatattca gccaccacgt tggagctaac
      361 aggctatatt cctttagata gaattgacta tattcactta aatggacttg actccagtac
      421 aatcactgta ttcaaatgtc aaaaaaaaga gaaagaggat gtcacgtaag gtcacaaatt
      481 atgttggatt ttgacagatt gtagccttgc tttacaagag cagtaacatc tcatttgtca
      541 ccgtttgatc tgtaagtgcg ggaatgagag cggaaggccc tccatctcca ccgcaattta
      601 atcgctctga ggccgacagt ggcagctaaa gccacctgcc catgcactgt actgctgatc
      661 tgttttaatt taatcgtccg tcagctggga tgaaagcata aatcgtctcc ctttgatctg
      721 caaacggtgt ggttttttgt aaagcgtggt gcagaatcag ggagacagtt ctcacattta
      781 gtgcaacata gacaacgtgg gtttgaaaag cttgtaagtg atagtaggaa agaaagaagt
      841 tgctcttttt gtaaattgat atggaacagc atgagatttt acaggtttcc agcgaggttc
      901 ttgattcata atatattatt tatttgagtt taaagagcca aactctgccc ttaaataact
      961 tgaacgt
//
LOCUS       KCLA01000885             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14255upu ultra-conserved element locus uce-1093,
            sequence.
ACCESSION   KCLA01000885
VERSION     KCLA01000885.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14255upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-1093"
BASE COUNT          194 a          116 c           99 g          147 t
ORIGIN      
        1 tactgtaaaa attctgcctc ttaccatagc aattacatcc cttcagaacc tttcctcctc
       61 tttaattaaa aatttatata tgcaaatata tatctgcacg tagatagtca cacacataca
      121 atcagacttt acactctgca gaagacaaaa taactttgga ggcgtaaatc ttaatgtcaa
      181 tgacaggaag gctttggtga accattacca taaatctgac aaacgctaat ttgatgggtg
      241 gctgtatctg tctgctgcaa gaccagtcta gacagtctat tgagaaatcc taaaacacaa
      301 ctgtttgttc cttgtaacac catctggata tggcaataag aggcgaccca gtgccattca
      361 cacatggatc aaagcacatg ctaatgccat catgaagtca tacacataaa aaattcaatc
      421 tgagaactct atgcaatttt cctaagtcct cagtgaagaa atctcagact tagcacaact
      481 caagctaagt gcatgaagag ggggagaggg tagaaaaaaa gaagagaata tttaatgagc
      541 ttggccttcc cgagga
//
LOCUS       KCLA01000886             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14269upu ultra-conserved element locus uce-1808,
            sequence.
ACCESSION   KCLA01000886
VERSION     KCLA01000886.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14269upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-1808"
BASE COUNT          159 a           96 c           85 g          130 t
ORIGIN      
        1 gtatcgtcac tcatgaatac tacatacaga aacattgagc accagaatat agatggcaca
       61 accatgcagg aaaataaatc cattattaaa ctattatgaa gaaggtgata cattcaaaaa
      121 tattcttctt ttaaactcac tcacttgtga ccaatctcat gtgcaatggt aaaagctgaa
      181 ccaagtccaa tgtcttcatt aatgctgcag ctcctttcag gctcacacat tccagccaca
      241 gaggccaagc ctgaataaac agaaggagac acaaagggtc atgccaaggt gtttcagtct
      301 taaaagccct ggttataaat gcctggattc tttttaataa cttctatgca cagaaggagc
      361 agttggcaaa aggttaactt tctagtcatt tgcaaaatca ctgggggaaa tttcactttg
      421 ccggctagac attaatattt tttgaactgc agtcagtact ggaaaatgtc
//
LOCUS       KCLA01000887             638 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14299upu ultra-conserved element locus uce-3479,
            sequence.
ACCESSION   KCLA01000887
VERSION     KCLA01000887.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 638)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..638
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14299upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>638
                     /note="ultra-conserved element locus uce-3479"
BASE COUNT          196 a          120 c          125 g          197 t
ORIGIN      
        1 gttgttgaat ggtcttttat attatgtctt agccaaatac agacattcaa tttacacccc
       61 accccacccc cccacacaca cacaaaagaa aatgtttttg tctgcagctt cctcatctca
      121 gaatgtgtct ggcttttgct aaggattctc attcaaattg agcaggagag cacagtgcag
      181 gcagaataca aatttaagct ggagaagtgg aacaaggtta gcgaagtgtg cagttggtga
      241 gattgatgtt gatacccttc actgccaagt gaaatgccaa taatgcttgt atagcatttt
      301 gtgagggtaa tgggagtatt gattactgag caataataaa gaattaagct gctctctcag
      361 gtataaaagt attggcaact gttccaaaga actgactctt agagtcctgt gtgttggctt
      421 atcttaatac aaataattca ggcttcaaaa tgattttaag actagacagt catggtcctc
      481 aggcacattc tctgttttaa attttataca ttttcacaag cttctccatc taacagccaa
      541 ccggttttca aggtgcaagt acaaaattgt atttctgaag gtttgttgga ggtcaataca
      601 aaaagccagt caagctatga aatgttaaca cgtttttt
//
LOCUS       KCLA01000888             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14315upu ultra-conserved element locus uce-7649,
            sequence.
ACCESSION   KCLA01000888
VERSION     KCLA01000888.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14315upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-7649"
BASE COUNT          144 a          132 c          121 g          159 t
ORIGIN      
        1 aattccatta tccacaagtt ttctagagca gctgcctcca cccagtctac tcctaggtgc
       61 acatgctggg aggcgttaaa ggcgggctgc tcagctctca cacatagtct ctcttacctc
      121 agaagttttt cctcctctgc tgcagcagtg gtaggggtca ggcacacaaa ggtgctgtcc
      181 cctgattgcg gcaaacactg ccatgtgttg tatgtttgat gaattaaaag gatgctgcca
      241 acttaattac actgtaaccc ttcaataaag gaagggcaga gctgattaac tagtgaataa
      301 ttgggggctg attgatggct ttctccctca ctgctaaagg ctgtatatat aattattttg
      361 cctgtgggcc taattttgcc actgttagct tccacttttg tcatcagctg taatttatgg
      421 atggggcctg aagtcttaaa aaaggctgga aaatgaaata gccctgaatc cccagatatg
      481 tcacctggaa atggccagca gcagccttta acgtcaacat ttgcagccat ttagcagcat
      541 taacacctca tcctta
//
LOCUS       KCLA01000889            1045 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14330upu ultra-conserved element locus uce-6569,
            sequence.
ACCESSION   KCLA01000889
VERSION     KCLA01000889.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1045)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1045
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14330upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1045
                     /note="ultra-conserved element locus uce-6569"
BASE COUNT          335 a          208 c          182 g          320 t
ORIGIN      
        1 ttaccaaagt gaaaagtgaa cttaagactt gtcatgtaca ctagaattca tacaaatata
       61 agttatggca aactgagaaa gcaaggactt atgcaaaact actctgttca tatatgtgac
      121 ccttgcaaaa gatattgttt tgatgacaga agacagatgt agtttgcatc actattgata
      181 ttaagtgtgt gtctttgcat gatccacagc acaacttact gcaggaacca ggaagaatac
      241 acacaggggt gtgggtcttt gcatggagcc ttagcaatga tgactttaat tcagctttcc
      301 ttgatatata caaaaactga tattccatgc acacacgttt tatttacagc tgactcatca
      361 acagtgacta gtcacccctt cctctggcag cagtaattac gagcagtctg taatcttctt
      421 taacgagctc tacttcacat gtaaggtctc agtgacctcc tcaaggcgtg agttgttcat
      481 cagggcccat tcagcagcag cagtctcttt ccagtacagt ccttggtatg gctaaattcc
      541 attgtccctt tttcagcagt caaaaatcca tgataaattc tgtacaacac tgtagttaat
      601 ataacagcag caccagatat tatattaatt cctttgctaa aagccatttg cagttatcta
      661 ttgacaatat tttaccaaaa ctaaatcaat gtacatctct aagtatcaga aatgtatact
      721 ttgataaata cattattgta caagaattct gacatgcagg tcatgctgtt gggctaggct
      781 atatacagaa gaacatatta catggtcaac gataagtaat atttattttc ctagcaaaaa
      841 taagacatga aaatcaggga ttattcaaca atctcaagga tctcttaaga tttgggttct
      901 tatggtcttc cccatggagt tctaaacctc tgcggtttag ggtaattttt cctcaccagc
      961 ccagaacatc aaatctgcca ttgcatttgt cctgttgcat aaacaaaggt tactattgaa
     1021 tgaaaaacca ctagaggaga ttcag
//
LOCUS       KCLA01000890             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14344upu ultra-conserved element locus uce-2313,
            sequence.
ACCESSION   KCLA01000890
VERSION     KCLA01000890.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14344upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-2313"
BASE COUNT           95 a           56 c           34 g           71 t
ORIGIN      
        1 cagctctaga ggtgactgtg aaacacacca attaaaccag tgctgtgaga aacgtttttc
       61 ctgttctctt atttattgac agattttttt aattacaaca caatgaaata atggtaagta
      121 cataagatgc catagtataa aaagcctttg taacccttcc cttggttaag acacttacag
      181 cagacaagaa ctgccccacc ccaactcccc cttctcgaat gaaaacaaaa taaatataaa
      241 ttaataaata taaacc
//
LOCUS       KCLA01000891            1116 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14359upu ultra-conserved element locus uce-342,
            sequence.
ACCESSION   KCLA01000891
VERSION     KCLA01000891.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14359upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1116
                     /note="ultra-conserved element locus uce-342"
BASE COUNT          398 a          234 c          167 g          317 t
ORIGIN      
        1 attctgagta gatgagaagt tgaataatat ttcccccctt tttctctttc aaaagttttg
       61 aaggtgaaac agcaaaataa aactgaaata actcggactg cacttcatca catttacctt
      121 catttcccaa gcccacaaat agcaattaaa acctacagaa caggcaggga gagacatgcc
      181 tgcacacacg tatgcatgct tacacacacg cacacacacg agcagtacct acaaaagact
      241 tctcccgtgg ctacaccatt gctttgcaaa caacaagcta atttgggttc ctatcatgca
      301 tctgatcggt catacagcaa tacaaaacag aaataagtaa agacgaccat ctgcttgtta
      361 gctgaaacta taaaagtaca tctttttaat aaacaataaa attagtttga cagggcagag
      421 accacctgaa tagaaaatca aatatttcat gttatttaag gtgtatgtct gctggctatt
      481 aaaatactcc tctttaattt attacagcaa cacacacaat actcatgtca tcctcatttt
      541 ctaaatcaat aatcagcaca gcatgcttca ttaacagtga ccaatcacga atgagctggg
      601 gatctcattt tacaacatga gcattcctaa gacataaacc atctgctact tgtagtaaca
      661 gaaaaatcaa attaatccat tcttatcatg cattcagatt ttaaagcaat taaagatgct
      721 cttagtgtaa tcgcagccac agaagtagtt ctgtaatgag gaaagcaaac tcttcactga
      781 actttctgtc attctcaata catttgaaaa ctttacaagc tttctgcact ccagtgggcc
      841 attgttctct gaacacagat gttgaaaaca acgagcaatt tttattaaac atttaatctt
      901 tgcacatttg aaggagttta aatactgaac agtgatcaaa aaagggcata aaatcaaaaa
      961 acaactgtac aaataaaaca atgcactggg tctaacctaa atcaataaat ccggaggaaa
     1021 gattcttttt atagccttaa ctcatgccag tatggctatc ttttgcagca catatggtct
     1081 gtgagatcgc acaatcgttt tatacacttg caatat
//
LOCUS       KCLA01000892             400 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14375upu ultra-conserved element locus uce-7107,
            sequence.
ACCESSION   KCLA01000892
VERSION     KCLA01000892.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 400)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..400
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14375upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>400
                     /note="ultra-conserved element locus uce-7107"
BASE COUNT          116 a           80 c           68 g          136 t
ORIGIN      
        1 agtaaaaggt taacagcctt taggaggaac actttttaat cacccacgtc tagactctat
       61 cactcgaatc accggcagtg ggagtgaaat atggctaagc ccccgtcacc aaacagcacc
      121 taaagactgt tgtatttaat catgtctgtg cactagttat ggattttcat tatgattccc
      181 gatgctgttg cgctgtgtaa aatattaata tccatagtaa tgatgcatga agcttggagt
      241 gtaatttctt cactctcctt gtctgatatt aaattgttac cactttatca tttgtgtaga
      301 actgcacgtt tcaattaatc tttccgtatc agcagccctg attaatatag atcatgattc
      361 ataagcttat cgtcactata gttttaacag atcatttata
//
LOCUS       KCLA01000893            1065 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14390upu ultra-conserved element locus uce-5834,
            sequence.
ACCESSION   KCLA01000893
VERSION     KCLA01000893.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14390upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1065
                     /note="ultra-conserved element locus uce-5834"
BASE COUNT          338 a          187 c          244 g          296 t
ORIGIN      
        1 gaaaaggaaa tggaaaaggc aatggaaaaa ggaaaggaaa aggaaataga gaaaggaaag
       61 gaaaaggaca aggaaatgga aaaggaaaag gatatggaaa aggaaaggga aaaggaaatg
      121 aaaaaaggaa aaggaaatgg aaaagaaaag gaaaaggcaa gtgaatattg cttctaaaat
      181 acattccagc tctgttttct tcttgcaaat cctagtggtt tatattagga caagtttcat
      241 tttattgcct tgttttcctg taaagccaac aagttaaaac aacaggattt aattttgggc
      301 tggcaggcca gctaagagat aatgcatcgt gccttttatc ttttccttcc tcctgctgct
      361 gcccggtctc ctcaaggtgc tgggctctgc cgtagctctg ctggacttat tggttgaaaa
      421 atctttgcag gtgatttata gaaccctatg gttattgtat ggctaatgat tcatggaact
      481 tcattaaata ccaagtatgt gcctgcttac tgtctgtgca cactgcatat tagaaccttt
      541 gcactccccc ttgcaaattg cccccattaa agtcgcagac aaaaggtcct ctcagtagct
      601 tacatatttt cccacatgtg agagagcaat tggaaacttc ctcttgataa ctaaaaactt
      661 ttgaattaga atttatgaga agggtctttt ggtctcgttg cctaagggct gaaacagatc
      721 ccagtgtgta caagcgttcc tttgatgcgt ggagctgcac agggtaacat tttttaacag
      781 gatcaaaaag cgtaatgcgg ggacaatgtg cggaggccct tgctctgaca caaggagtca
      841 gcgtctgtgt ttttccaagg ctaaaaatgt aaaactatgc gtgcagggga gcaacagcgt
      901 tttatattct ttttaattgt agtaaactcc cggataaaat aatggcactc agcgttacaa
      961 cttcctcttc tttaatgttc ctctccaaag gctttgaagc cgcttttacc tttgggaagg
     1021 gattgtagat gtgttagggg gaaatatatc aaaaagcaaa tgaag
//
LOCUS       KCLA01000894             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14406upu ultra-conserved element locus uce-7513,
            sequence.
ACCESSION   KCLA01000894
VERSION     KCLA01000894.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14406upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-7513"
BASE COUNT          161 a          165 c          136 g          166 t
ORIGIN      
        1 ttggctgtgc agaaagctca aatcctacct gaaagcacgg aggcagctct gcgaagtctt
       61 ttcacaagca gcacgttccc atccctaacg tatacgaccc cctggtactc ctcagcctgc
      121 gttctgcaaa gcctaacgtg atcggcagtc acctcgagac ggttctgagc cagggatggg
      181 cgagaccgag ggtcgctcct acaagcactc cgcttgttct ccggccatca ggcagatgca
      241 gggataaatc tgtcaagtgg gaaaacacaa agagaaatat tgctattttc tcttcctcac
      301 attcttccca ggagctgttt gctcagttgc catggcacag gcgctgagat tttataattt
      361 ttcccctgcc tgccatgtgc tcacgcaaca atgcgaattt aatcagtcca gacagttggt
      421 tgtgttttgt ccatgtgagt ggaataaaac ttttctcacc agctaaaccc acaaagtatc
      481 taaaagccat aaataatcac taactcctat gacttgcacc tgcttgcttt atttgaccgg
      541 gggtacagaa aggctcctgt aatgaacggc gttcccagca ttaatcacct cgggttgctt
      601 ataaaaatca aagtccgcgt tatgtttt
//
LOCUS       KCLA01000895             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14421upu ultra-conserved element locus uce-2553,
            sequence.
ACCESSION   KCLA01000895
VERSION     KCLA01000895.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14421upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-2553"
BASE COUNT          269 a          179 c          228 g          219 t
ORIGIN      
        1 atttacacca gctaaaaccc atccggatgg ggactgacag attggaaatg aacagcactt
       61 cagtcatcct gctccgggtc ggctaagaat taccgcaaca ccgcgctcgc ttgcataacc
      121 ctcgctgcac gcgtctgctt tagcacaccc agagcctgcc cctctgaaag gaaaggtttg
      181 ttctaaacac aggccgattc ctaccgctcc ctgcttctcc cccatctgca tggagataag
      241 cgcacgcatg cacgctgcat gtgctcattc tctgggtaat caggggcaca gataaaacgg
      301 agcggataga gtgacggaca ctgtgcagac aggattgtta gtttatgtag gctataggca
      361 gagtcgactg gaaaattttg atcactttaa tttactatat ccagcatgcc tgctgtactc
      421 gtccagcact tttatcaagc cctgtgaggt ggtattgatt tttttatttt ctatgtagga
      481 taagaagaca gagagttagg agcaagagtg aatgaagaac tttcctcaga ttactgctat
      541 tctccagctt attgcatcct gtcgtttgta gtttcagatg atgtccagta tgtcagggtt
      601 gcttgaagca ataaacaggg tgaataacaa tggaaaggct agatgagaaa gattgaaaaa
      661 ggagaaagag gcagcagaga aagtgagaaa gtgaatgtga gaaatgggaa aaagggaaaa
      721 agcagaggtt gagaaaaagt gtgctgggtg tagagagctc gataagtgca ttccttcaaa
      781 ggagctgtaa ccagccatga cagtttttca agcaagagct gcacataaaa cctgtagaat
      841 tgtgatggag taggagcagt ggctacgaga aaaagtcatc acaatgttta cggta
//
LOCUS       KCLA01000896             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14436upu ultra-conserved element locus uce-4339,
            sequence.
ACCESSION   KCLA01000896
VERSION     KCLA01000896.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14436upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-4339"
BASE COUNT          179 a          138 c          111 g          197 t
ORIGIN      
        1 agtctctgta gcttcctgtg tgaggaaagg tctaattata aaccacagta cccacactgc
       61 cctctgcaaa gcactggcct ggggcatgtg agaaaaatta ctccatttcc tagcgcagcg
      121 atgtctcacc tttatgggtg tgcaccgaag aggaatacaa aataaatagc acataatttt
      181 gcatttttat aataagtttg aaactaaaca ctaggaaacc ttgtcagctc ctgctaagtt
      241 gattccaatt aaagcttctg gcagagttcc agctgtttta ctacctcaaa tagcactgaa
      301 cataacaagg tttatgaagc attcaaaagt caaataccct attaacataa acatgtagtg
      361 aaatcaactc ttctacaatt ttcagcttgc tttctttctt tcatttacgt tggactaatc
      421 taagatgatg tctgttttct ttgttgcatc tccctgctcg ctggaatgca aaacaagatt
      481 tagtatttga atggtgcatg atttgccccg agaacttact ccttttggca aatggctttc
      541 tatcccactc tgttttgata gcagcactct gaaggctggt tctctacacc gcttttaact
      601 ccaaacagca agtggtacat gcttg
//
LOCUS       KCLA01000897            1066 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14452upu ultra-conserved element locus uce-1598,
            sequence.
ACCESSION   KCLA01000897
VERSION     KCLA01000897.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14452upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1066
                     /note="ultra-conserved element locus uce-1598"
BASE COUNT          313 a          202 c          236 g          315 t
ORIGIN      
        1 ttaccctgca ctcgggattt ctgctattaa aaatagcgac agaggtgaca gcagcaaagt
       61 agcgcctggc cccgtacgtg ctgctactga tccgattgtc aaaggacgtt tctctaattt
      121 acaggactgg taacttggca gaaggtggca agaaagcatg gcacgaacca ctgtgatcgt
      181 aataaagaga aaagcatggc cccagcagag tattttctaa gctgatggat gatacagaaa
      241 tacagttcct aagcgagtaa caaaaaaggt ggggggagga gggatgcaaa ggggagaaga
      301 gaagggaggg gggagagaaa gttcctgtgc actttgttca aggttccgca cctctctaag
      361 cagctgtcac atccgtacat tatggtacat tgaatctgaa tgaggctctc cacatcaaaa
      421 ccttgcatcc attatgatat catctcctgc tctaagctgt aatgcttatt aattctgcac
      481 ccatactctc caagcttcag caaatgtatt ccatcagcct agcatttaat ttaattagta
      541 cagctgggct ctcattctcc tttctgtgtc agaggtattg tcagcacgtt ctgctataac
      601 acaattactg attgctttta gataggcaga aatatgatta gggtattggg tgactgtatc
      661 ataagcctta ttagattcat ttgaaatctg gagataaata ggaaactttt atttgcagtg
      721 taatgagatt atgcttatta ggccaaggcc tcacaacctt ttgcaaagaa catagtgtat
      781 cactaggatt atactctgga accacacttt tagctcatag caatttctca gcagctttga
      841 gatttaactg ttgtagtcct gtacacattt tataattgtt ttgtgtctca gtggctttct
      901 catgtgatag attgcgtgca ccttccatca tgagttttct cttgcttaag cgcaaaaatc
      961 taggaaagat gttttgttca atagagaaaa gatgtttgga tgaactgtgg ccatgtgtag
     1021 atgagtaaac atgctgatac attaaacaga agaggttttg ccaata
//
LOCUS       KCLA01000898            1006 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14467upu ultra-conserved element locus uce-7352,
            sequence.
ACCESSION   KCLA01000898
VERSION     KCLA01000898.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14467upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1006
                     /note="ultra-conserved element locus uce-7352"
BASE COUNT          315 a          207 c          164 g          320 t
ORIGIN      
        1 cacatatata gctcttacat atgcaacaat attcaatgtc tttcttttag attaataaca
       61 tatcgtagct acaatggaat catcttgtca aagatatgac tgcttggcca ttgtcaggaa
      121 catttgacaa gtgagagcca aatttgtccc tgactgttct gctctcgatg gaaactgaaa
      181 ggtcatcatt cacctgatga tgtcgttcca accccattat cttttctacc ttgtattagc
      241 acctctatct ggcaaacaga gtgagtaaga tgttgaagaa ctgagatggt atttcaggct
      301 atctgccagc aagtggaaaa taataatgga acttgtttgc taacaaatta gacaattgaa
      361 tttagacact gaacaggtca cctctgtgat ttttcccatc cctagctggt caatcatcta
      421 aaaaggtaga attgccaggg tcaatcctga aactcttttc cccgtgtggt agcacaacat
      481 accaaccatg cagctactag gccatccccc acagttagaa gtatttcaag gtcaatttat
      541 caatttaaca gcttcatctt cttaatcact aaacttctgt ctctttgagc ttgtgctgaa
      601 cgactgtggc tgctaattaa aatggagctt tactagcaag tacacaaatt agatcctgtc
      661 agtaagttta ttctaactat tggtcatttc taaatgcctt tttaatcccc taatttttac
      721 attaaaattc aaaagcctaa caatcttaat cacccctaca tcaaattcat cattaagaac
      781 aggaagccag atggtataat tttgatttac cggacttcag cgtgaattaa tgtactgagt
      841 gccgataatg aatacatcaa acccgatatt gcagaaacct atgaatctgg catgttaaat
      901 taataacaca ctttgcacaa tgaaagcatg taagctcata taaaactgag gagtaatggt
      961 cccttttatt ttaaatggtc tttattagcc tgcagttttg actctt
//
LOCUS       KCLA01000899             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14482upu ultra-conserved element locus uce-7032,
            sequence.
ACCESSION   KCLA01000899
VERSION     KCLA01000899.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14482upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-7032"
BASE COUNT          171 a          180 c          184 g          233 t
ORIGIN      
        1 agacatgaat gaggtcaccc ctctaccacc tcttctccaa gcctgcttga cagctctgga
       61 atggagctga gcagtggctc acggggtcaa ccccacacag tcaggtgcct ttcctttgtc
      121 tgggcaggga tgctgcacct ggcaggcatt tccagtgctc agctgctttc tcactatctt
      181 agcacctctg gaagttgttt gtggacggat tacaccacct cctcattttc cattcgcctg
      241 ccagcttaat attgtaccta acccagcatt tgggcatcgc ccattgctca gggtatgtcg
      301 agtgttcatt tcagtgtctg tcagagaccc agggttaaaa ctattggagg tccagatgac
      361 atctggcttc tcagctcctc cagaatattg gctgcagtgt ttatcagtgc attattcatc
      421 aaaactgatg atgcaaagta caacatgctg tctgcagctc ggtgtaagag tggaaaggag
      481 ttggcagaaa tgcctggcgt tctgtgagca gcatgtaatc aatagtctgg gtgcttgttc
      541 actttatgtt gatgcctatt ccctctggta cctctctgta tatttttggg ttctctgtat
      601 taccagctgg gcgatttttt tctcttttct tggtaacagc cttgctagaa cagaaggggc
      661 aaccttttgt gcggtaggtg tcaaatcaaa gaaactattt gcacaaatga gaggcagaga
      721 gaaaaggttt agttgagaat ttccgtgaca gcctggtgtt tcttcctt
//
LOCUS       KCLA01000900             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14498upu ultra-conserved element locus uce-913,
            sequence.
ACCESSION   KCLA01000900
VERSION     KCLA01000900.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14498upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-913"
BASE COUNT          126 a           96 c           86 g          152 t
ORIGIN      
        1 ctattgcatt ttaccttcac aatgatgctg gaatggttga ataaagtgtg gccctgctgc
       61 ccatatgcca ttcagcttct gtctgtcttt ttgtttacac tgggaataca ataggaacta
      121 tagtccttcc aatgcatcat ttataagtgt attctacctc tgaatgtaca gacagaactg
      181 gctctgtgaa tgagctctgt gaatattgcc aagacactgt gctttgttca gcattattct
      241 tcacaataga taccacactt tggaagtaat tttaaaaagg gaatcaaaat agtggtactt
      301 ttagcctttg tttcttttat accacactgc attctctgtc tctcactcag ctgcttctat
      361 tatactgaca aattaaataa accactccat tgctaaagag gcttgggcgg gctgggcttc
      421 ggtacactgc cgcgctagga agttgaaata aacattaatg
//
LOCUS       KCLA01000901             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14514upu ultra-conserved element locus uce-7833,
            sequence.
ACCESSION   KCLA01000901
VERSION     KCLA01000901.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-7833"
BASE COUNT          146 a           76 c           97 g          148 t
ORIGIN      
        1 agtattacaa tgtttgaaac actatgaact ttatgtgcta gctctcctga agagctctta
       61 ttattacaag caggtagact agttgtcaga agagccttct gaagagtcct agtgcatcag
      121 cagcaattaa tgcaggtggt attttagaca agacagctaa tgagctttaa tatgcatgca
      181 ggtgagggag tgctgaatca gtagagccat taatgaacct atgacagcct aattagctac
      241 aatttaaaat ctatggaatc taatcagaag agctgaacac tgctgcaaat ctgtgtatga
      301 atgagtcttt ctaaatactc caatctgttg cttagtcact gattgatagt aattgctttt
      361 tttcctctat tgtgtatagg aaaatgccca attttgttct gatagaggag gacacaacat
      421 tgaagttaaa tgcctgagat gtttgactgc ttaagtttta atcagga
//
LOCUS       KCLA01000902             531 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14528upu ultra-conserved element locus uce-7661,
            sequence.
ACCESSION   KCLA01000902
VERSION     KCLA01000902.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 531)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..531
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14528upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>531
                     /note="ultra-conserved element locus uce-7661"
BASE COUNT          146 a          106 c          113 g          166 t
ORIGIN      
        1 taaattgctt atttagtttg tgcgttcagg tacttctgca ctgaccacat tgggttttct
       61 ggacacagaa tctctgctga tgttaaccta aggaagtcca accatgctgt tcccagagtt
      121 ggttcagagg tgtacccatg atgaaaatat agataaaagt cgaggtaggt agcccacttg
      181 gcacagctga ttgactttaa taggtgttga ttacactgct catattgcat gaaattaaaa
      241 agcttacaaa tgttacgagc cattaccctt ccatttaaga gagcttatga caagttagca
      301 acatttaatg aaatcctctt caaaatgcca taggcagcct cctcgcgatt ttgttttgaa
      361 atgcaacttg tggagttatt tcaaaaagtt tgtttacttg agagcttccc ctcttgctct
      421 ttttcaggat gctctgattt tgcagccggg gggatacttc agtttcctgt tgtgttcttt
      481 gagtggcaca gaagaccagc tccttggaca aacaacaggg aacagacaaa g
//
LOCUS       KCLA01000903             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14544upu ultra-conserved element locus uce-3610,
            sequence.
ACCESSION   KCLA01000903
VERSION     KCLA01000903.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14544upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-3610"
BASE COUNT          171 a          136 c          125 g          169 t
ORIGIN      
        1 tttttcccac tgaaaagttg cctaggttat aatgtttata atatattatt gatgtgactt
       61 gatggattca gaaacccaac aaaatctccc caaactaacc ctgagtgcag gggctttatt
      121 ttggttcttt ctcccttcca agggccactc ccctcccccc gcagccacac tacaaagctt
      181 gttgtacagg gactccatta atcctacatt tcctagatgg tatctgaggc acagtgggtt
      241 tccacagaaa ttaatttgtc ctgacaacag gcctaaagat tggagtccag ggatcacttg
      301 gcaaattccc tttaaactga gcacaataat aaacagaaag ctgataacga cagttctgaa
      361 agaccacaca gaggaaggac cccgagtaga ggcgcttgga tcggcaaatg cctcccagaa
      421 caggggcttt cagctgggta ggtactggag ggcagtgatt tgtacctgtt gtaataccac
      481 agcaccaggc acttcaccta gtaatgcacg tttttaactc ttatggaata ataaagtgca
      541 ggatcgatct ggtttagatt ttatttcata tttgtattaa tagatccgag gtttcccatg
      601 t
//
LOCUS       KCLA01000904             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14560upu ultra-conserved element locus uce-3859,
            sequence.
ACCESSION   KCLA01000904
VERSION     KCLA01000904.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14560upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-3859"
BASE COUNT          111 a          155 c          147 g           94 t
ORIGIN      
        1 agcagcagag acacctcccc actccctccc tccctgagat ggagctggtt cgggagtgaa
       61 aggatcccta agcctcctcc tctcacactc tgcacctcct gctgctgctg cgacctagca
      121 aaacctgtga ccagtaaaac ccagtaagag agggtgctaa accaagggca gagcttcgtg
      181 ttgttttgga ggggagaaat tggctcctca aaacctacca tccaggagct ccagggtgac
      241 ggtgccgtcg acgtactccc accagtgctt cccgtccgtg gacactggga tctcccagtt
      301 ggaccattta caggccaggt ggatgcagac gcaggccacg acgggggggg tgtactgcag
      361 gctgaaggtg gtcaggtgca ggctgggggg gccagcaggg agagagaaac acaaagccat
      421 caactcccag atctcaacgc cggcgtctcc tcaaagggga gggggaaaag gtcctgcggc
      481 tgttcctcct cctcctcctc ctcttcc
//
LOCUS       KCLA01000905            1077 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14575upu ultra-conserved element locus uce-1776,
            sequence.
ACCESSION   KCLA01000905
VERSION     KCLA01000905.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14575upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1077
                     /note="ultra-conserved element locus uce-1776"
BASE COUNT          326 a          232 c          215 g          304 t
ORIGIN      
        1 cactatcaga tgtgactaac aggtattgta tgtgacttga agctgcctaa atagacactt
       61 ccatgcgctt gactttaaga gcaaggatgt gtatcaccag ctcccaccaa tattcttggc
      121 tcaggcttca actgagagta gccagaggca gcctttgtac agtaaatagg agctgagcag
      181 cactttctgc ccgagtaaag atccctttag tctcctctgc aggcaggggc tccctcattt
      241 ccctgctgcg agaacacacc ttcactgact tctctcagta attaaagctg acatagctta
      301 tgtgggccat tcacctttta ttcaacacga gcagcctgct cgaacgatgg agaggttcac
      361 aggaaggaag cagttaaatg ataaaaacgt gaaatgttat gcagcaagct gtgtacaatt
      421 aaccacaact caaatataca ccttgtttca atccaagcca tttatcagat aaaaatagtc
      481 tgctagaaga atgtcatgat taatgaggtg agactccagc taattactgt ttcctccaga
      541 agtaattagg ttggcattgc taatcaagat gaatgaacac tctgacccgc ttttttaaat
      601 gtaaaactat gagctgcagc agcaataaca tcatttagtt caggcaatgt agtctttatt
      661 aggcttgtag tttgattaaa tgcttttgtt acaccagcct ttccacacac gaacagatga
      721 atgccgtgat gttcaaagag tttgtcaccc ttaattaaag actgaaaagg cttgttcaat
      781 tcacagggca atacacagga cagctctaaa ttgatagctt ttaagtgcgg gataactgag
      841 ggagtcacag ggtttaccca tctgcaagag gatctctcct tcctctgcaa ttttctgtta
      901 cagtagctgg aaaattaata tcagatattt ttctatcgat tccattaagc aaggctcatt
      961 tcatcagagc acctttgcgc acacagctat aagctctact tgtgtagagc gagtccctgc
     1021 taaactaaga gagcaagcct aagaaattac acttcaaata taaggtagtt tatcggg
//
LOCUS       KCLA01000906             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14591upu ultra-conserved element locus uce-1570,
            sequence.
ACCESSION   KCLA01000906
VERSION     KCLA01000906.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14591upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-1570"
BASE COUNT          190 a          103 c           98 g          193 t
ORIGIN      
        1 tttttaattg atcatagtag ctacaatggg ttataaacat tcaactttgt acacctctta
       61 aatgtcacca atatttctga atgcaaagtg agccagcttt tacaaacgag aaatgccttt
      121 agaatagcag aggtggaatt tatcccacca gatgaatttc tgttatacaa ttgcagaatg
      181 aatctatttt ttcagtcggg tgaagggaag agacagtcgg tctgagattt acacctgatt
      241 tgtgttatag taatctttga aattaagaag tgtatccttg catttcatta aattctggct
      301 aatgagataa ctgtcttccc aaggagggag tgatgaagta ctcatgccgt aaagcataaa
      361 ttaatgctgc aaggttaaac actggaacta actcatgttt caacaaaagc ccctaccagc
      421 agttaaatta actgacataa ataccataaa atctgtcttt attttagtct cagatgatgc
      481 ttctttttac acccctgctt tcagtttgta taactcattt ttgcacgtta tttcatgcat
      541 catttgccat ttaaagaatc agctacaact gaaaaaagat ttaa
//
LOCUS       KCLA01000907             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14607upu ultra-conserved element locus uce-2147,
            sequence.
ACCESSION   KCLA01000907
VERSION     KCLA01000907.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14607upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-2147"
BASE COUNT          270 a          133 c          162 g          247 t
ORIGIN      
        1 ctctttttat gcacacaaac acccctatgc acatgcatat atattaatat atataatata
       61 tgcagatatt gatggaattc tatgagttga aagagaagga agatgtcttt aaggatccat
      121 atctctcaca gcagatatat gttattatca ctgaaatgtg gccttcagtc ttgaaacagt
      181 taaaagagtt ctacggccac aaaagaagag atttcttcag aattatctcc cgcctcacat
      241 ttgctcttag gcaagcagtt taaaaaagcc cagtgattga gccagtgatc caatttgaaa
      301 tgcagaaatg attagagctg cttgcctcat ttcatatcga aattctctga tttatgacag
      361 ggctgcagcc aagatctatc tccaaaggga attagtgtgc aagtttgcat atttttgtta
      421 tttaggtttc tgatatcagc tgctagctag aaatactgaa ctgggaggtg gtggtgcagg
      481 gtttttcagc cattggagca aagaaagata agagccttat gtttaggaca tttagacccc
      541 ttgaccatct caccatacag taatttttaa acttggattg cagtaataca ggaatccagt
      601 ggaatggtta attgtagttg tggagaaagg aattaccaaa attctgtctc catgttttaa
      661 ctaggagaat tttaatgagg cataaaactt caatcatgca actgacctgt ggggcagagt
      721 gtagaacata taatgaaaca gaaatagaat tctgaaaaaa aattattacc ttatctggaa
      781 tttacatgaa gtgttaacag gaaattatgc ag
//
LOCUS       KCLA01000908             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14622upu ultra-conserved element locus uce-2843,
            sequence.
ACCESSION   KCLA01000908
VERSION     KCLA01000908.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14622upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-2843"
BASE COUNT          324 a          152 c          163 g          306 t
ORIGIN      
        1 gataggcaaa tttcccatat actaaggcca ataaattaat ttcctttcaa gtgaaataaa
       61 cttatttttt agtgactttg aaataactat acactgcaga acaacgaaaa aaaacaagtc
      121 caaagccaag acatgcatta attctttcaa ccttgaactg tagttttgta ctcaaatttt
      181 ttttcttttg aggtataaag agaaaacata aatgagctaa aaacataaat gggctaaatg
      241 aatctgacct atctagatct gtagagctta gatataaatt gaaaagatca cagctatggg
      301 gagaagacct atactgtaag ggcctttcta catagattat gaacataata acgcaataat
      361 caaaactata gttataattg gacccaatgg gggtctctct ctttgatcag attacagtat
      421 ctgtgacttt acactggaaa atgtcactac tgtgaaggtt tgtcacttgt agagctggtc
      481 ttttctgtga tgccgtgtta agttctcatt agcattattc aaagtttagt tgttaattaa
      541 gttgacactt caattacaat catcatctac aggagcactc aggactgctt gcataaggaa
      601 acaaagatac ttacccttgc atacatttct aaaagaaaga aagctgattt ggtgatagct
      661 tgtatttacc atattctgtt taacaagtag ctctgaatac tgctttgtat agcatttagc
      721 aacttaaata ttgctttgtt tggtatattg caataccaag agatacagaa agatgtatgc
      781 attgtaattg gagttgattc acttctccac atgtcccttg tggtgaaaac aatgagagta
      841 ctgactataa ctgcatataa ttccacatat cttttaagaa tactgtggta aatcaagaat
      901 cgtatgattt tcatacaatc atgcagttgt aggcattgga aggga
//
LOCUS       KCLA01000909             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14637upu ultra-conserved element locus uce-627,
            sequence.
ACCESSION   KCLA01000909
VERSION     KCLA01000909.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14637upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-627"
BASE COUNT          283 a          141 c          157 g          275 t
ORIGIN      
        1 gatttcagta atagacttag aaatttctat tttaaatact gtattagatt aggtctcttg
       61 tttgagtgca tacacagaat atcctgcaga tacaactctg ttagaaaata aaatcccatc
      121 attttattta ggctgaatgg acacaagtta ttttaaatga tgtgggttgc attaaaaatc
      181 acagttaagt tttacgttgg tcacacttta catatgcttc caatgactta attctgtctc
      241 aaaaatggaa aacatatgat aaatggaaat ttatacttgt gtaataaaaa gagatagcaa
      301 acacaaagtc atttacatat ctcccttgaa atattgcata ctggctttgt cagtgctggt
      361 aagtccattt caaggatgtc acccttagtc cattagtttg gataatgagc cctataaagt
      421 acatttataa ctcgtggcac tgcaaggaga tggattctaa ttttcatcct tttatctaga
      481 cacattgaaa gaaggtcaat ggagggttct gtatgattca ttgttctaac acatatcaga
      541 tgacagagac ctgataatgt cagtgcataa gtgtttgcca tatttggaag cagcacttga
      601 aagaaatttt ctcagcatca acctttgaag taaagtgggg actgaaatta aaagccctgt
      661 tgcttctgct taaattctta ccatacatac aacccgatag ctattcctgg acaaagaaga
      721 ggaaacaaca cttagcagga aaataaaaag tgtgtagttg cttttgctgg ctctgagtga
      781 tgtgacatga catttaatca acctttcccc tttgataaca tttgggtggc aggggaaatt
      841 gtttcataaa caatga
//
LOCUS       KCLA01000910             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14653upu ultra-conserved element locus uce-5968,
            sequence.
ACCESSION   KCLA01000910
VERSION     KCLA01000910.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14653upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5968"
BASE COUNT          214 a          121 c          107 g          183 t
ORIGIN      
        1 cgtttcattg agctgggaaa gtcaagtgag tggtttttaa aagcacgagc gttcccaaag
       61 gtttaaaata ttaattatgg agattctttg aacagaagag cgaataggtc aaagtagggt
      121 atttggttaa ccagccgtgg tgttgcaaat ctcatgtaca ctcaaagcac ttcttacaaa
      181 caagaactgc agaactaaac taacctcggt ctgcggtcac aatcctttgg taaggatgga
      241 cacgcatatc gtgccttcga actttagtag ccaccgcacc tagttaaatt gcaattacca
      301 agacaaagtt agaaaacatt caaagaaaac attaacagca ggtttatcaa aatggatttc
      361 aatgatcatt aactacaaaa gttcattgta agaaaagcaa caagttaagg cacagtagtt
      421 tcaaatccta aattcaaaaa ggcgtttatc tgtgcagatt aatattgcct tttctttaaa
      481 cactctggcc ttaacctgtt tcatccattc atttacaatc ccaaaattac agtatttcat
      541 gaaatctatt agacccaagc acatttaagc tttactagtc acatattcac tgaagtgcct
      601 ttcttgcagc aggactattt taaat
//
LOCUS       KCLA01000911             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14668upu ultra-conserved element locus uce-4899,
            sequence.
ACCESSION   KCLA01000911
VERSION     KCLA01000911.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14668upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-4899"
BASE COUNT          204 a          127 c          150 g          229 t
ORIGIN      
        1 tttcggtcag tgctctaaat tccataaaga tgttgcacat ttctgtaggc aacagtcgtt
       61 ttaaagccaa ggttgttgtc ttctgcacgg acaccagtag agctgacaaa ggattccttt
      121 agctaaaaca atcatatatt gaattttgaa ctacctttta gatacttaaa ttgtcaagca
      181 agcatcttgt acaggaaggg ttttcggtgt gtaattcccc agtgtaggtc aattaaagcg
      241 ataacgcttt cccaaaggcg aatctgtaga tcaagtgtat tttcctagtt gtacatcttc
      301 cttccgtgca tttatttcaa atgttaataa agttttcacc tgcaaaaggt ttagaattga
      361 cagaacaaaa ctcttctttt ttaaatcatg acaactacta ctgtttctgt ctgcaggtag
      421 tggaggacat gctagaggac gaggaagaag aggatgacag agatgacaag gtaattatct
      481 ttcctagcac ttgggtatct ggggatggga gaatttagac atgacactgt ttttacagac
      541 agttaaaaaa ggagttgaag tgttttagtc cagaaaattg gacagagctg tttatcatcc
      601 taacaatgct accgtgtgtt gtgggaaagg atagagaact ataaatcctg cgcttttttc
      661 cccttttctt tcgttcccct ggtccagagc tgggtcaaat ttttttctgc
//
LOCUS       KCLA01000912             930 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14682upu ultra-conserved element locus uce-4400,
            sequence.
ACCESSION   KCLA01000912
VERSION     KCLA01000912.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14682upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>930
                     /note="ultra-conserved element locus uce-4400"
BASE COUNT          285 a          145 c          196 g          304 t
ORIGIN      
        1 ccctccgcct cctttctccc ttaagtgact tgtacatcgc ttcagagcag ccattttctc
       61 actgtggaga tgtgaggtgg aagttacagg agaataaaca caccatttct cacttggaga
      121 tgtttgtttc aaaataattg tgatacttag agaaaaatac aaccagaact gttgcagtat
      181 tttatttcag gggcttctga aagtaaaata tataaaaaaa gaaaataata atccaaaact
      241 aatctggaaa tcaggttgta cttgttacag acatttagga gggtgattca agaatagttg
      301 ctgtgagtgg tcttgtagca gtaaaagctg ctcttggtat ttttgtggat ggctagttat
      361 ggctgctaat tgtgtagatg ctttattctg ccgtatgagg aggttaatct acaattaaac
      421 aatatttcct cttggccctc cattattttc tgaaacagat ggttcatcat ttcctgggct
      481 gttaaacaca gcaaggttaa ggttagactc ttgggaatca gctagtttcg aatcttatta
      541 ggctgtagaa ggaaaactaa taagaatact ccttaatatc attttgtgac tgtaaacaat
      601 tatttattag caaacaattg atcccagaag ggcaaattgt ttgagtcagt aatgagctga
      661 gaaaagacag agcatatctg tggatttgga aaataattgt aacgtaattg caatgcattt
      721 agacaggcat ctttttggac ctgtttctat ctttaaatga atttctgaaa acattaatga
      781 ggtttatatg cttctctgac atttacaagt agctcgtgcc aaccttgggg cactaagaat
      841 gatgtgtgtg ttttaatgat gcagtggcgt gagtcatctc tggttagtct aaaaataagc
      901 tagttaggac agaagactga tagttgttgc
//
LOCUS       KCLA01000913             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14710upu ultra-conserved element locus uce-866,
            sequence.
ACCESSION   KCLA01000913
VERSION     KCLA01000913.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-866"
BASE COUNT          181 a          157 c          115 g          229 t
ORIGIN      
        1 acccccagca cttcatttgc ttgtacacag aataagtgtt attaaaaagt ctgaatgaaa
       61 acttccatta atgtttctgt ctatgatctg attccaagtt gaagcattta gattactacg
      121 aggtttatgt agccgaaagc agaaccacag tttgttcaca gacattgctt gctgtctgca
      181 attattttta tccctttgca aaactttgaa ccccatccag ctttgacaca ctacctcttc
      241 agttaataac tatcaagttt ccccttgtct cctgtctact tttctttgag gcaattgcgc
      301 actcagcacc ccaagataat aacacacatc tataagataa aagcagtggc attaatgtaa
      361 ttgtctgcct ttctctcttt agcctaatct tttttatcct tcagttttga ctgcctctgt
      421 gacacctgtt tttgtctcct ctgatcctat gacaggtttt ccgctgacaa ggtttttgcc
      481 tgacagagat tctgccagac aagaacataa taaaatatga agaactgctt gtcagagttt
      541 ctgccaatgc tcacatgaaa taggggggaa aaaaatcctg actttttttt taaaggggcc
      601 ctgtgctggt agcttttggc ctgtcaggaa acatcctccc tggccaattc ctccaagcca
      661 aacaggtgtt ttcttttatg tt
//
LOCUS       KCLA01000914             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14725upu ultra-conserved element locus uce-2151,
            sequence.
ACCESSION   KCLA01000914
VERSION     KCLA01000914.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14725upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-2151"
BASE COUNT          213 a          135 c          154 g          243 t
ORIGIN      
        1 tgattaatgg aaatacggat agctggacac agactatatg gttataaatg gtgctgtcaa
       61 aataaaataa ttattgtatt aataaggaag ctgtttggcg tgggtcctac tctacctctg
      121 aaaatatttc agtcctcgac gtgttttgtg tttcgggata tatcatgtgt tttcctgatg
      181 agcgacttgg tggtgtacgt tttaatacaa ttactgttta gcatcgcgag tccctcggat
      241 cctagtgcag gcactgcagc tgcagatgga ttttttttat tgacctaata ctagttctaa
      301 ctagatccta gagattgact aagttggtgg agcacatact gctttcaagc aggaatggga
      361 aaaaagtagc atatcttatt gtacctgaaa cactctatga tatgtactaa atattatgac
      421 tactgcgagc cctgcaataa ttgattcacc cacacagcca tttagtctgt gagctgttcg
      481 ttttacaaat tctacaatct tttagaaatt ctttcagtga agaagattgc tgcctggcct
      541 cagattcatt atggtgattg aatcctcttc aatagagaac tgtttaaaga gagcacatcc
      601 ctgtgtgtct cactcagagt gaaggcacat aggttaaaag cttgtctggg tggcataatt
      661 cactgctgct gtgccaaaca atcacatctt attgtgacct tcataagata caaaaaggca
      721 acagtatgga gctagtcttt ttttt
//
LOCUS       KCLA01000915             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14741upu ultra-conserved element locus uce-1842,
            sequence.
ACCESSION   KCLA01000915
VERSION     KCLA01000915.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14741upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-1842"
BASE COUNT          176 a          161 c          138 g          135 t
ORIGIN      
        1 gccacagaga acaacacccg ctaggagaac tggcgaaacg aatccaaaat ccaggggtga
       61 agcccaagca gctccgtttg cccccagact tccacaaccc agacaatata aaggtgcgaa
      121 cccaacgcaa ccccgattgc agagcccctc agcgccgccg agagccacag tcgcggctct
      181 gtgtcgggga gcgctgctcc cattctaaaa atactgtccc acagctggtt aagatttatt
      241 tttttagacc atagcaccac tgtttggttg tttccaattt ctgaaaccac aaatagtaaa
      301 agtgtactca ggctcctgca aacataaata gcaaatgcac gcttcagcac ttttgaaagg
      361 atatggaaat tggcagcaaa aatgcagctc atgtcgaaaa tttacgaggg ctcggccgtc
      421 tcgctgcaga aacacaatca ggtaaaaagc aggaagatct ccaccagctg ggtggcattt
      481 ttgtgttttc tttacttata attttggtag ctgaaagagg ttcattatga gactgctggc
      541 gctccagaaa ccagaggccg gtccctctgc taaaagcgcc gccgctttgg ttacggtcag
      601 catcacacaa
//
LOCUS       KCLA01000916            1187 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14757upu ultra-conserved element locus uce-200,
            sequence.
ACCESSION   KCLA01000916
VERSION     KCLA01000916.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1187
                     /note="ultra-conserved element locus uce-200"
BASE COUNT          299 a          328 c          257 g          303 t
ORIGIN      
        1 caggcacaaa ccctactctc acacttgggg agaacaggat gtcggcttcc aacaccctgg
       61 tcacagagga ggccaaatct cctccttgaa attcatggtg cccctggctt ggcgtggcat
      121 ggaaaacact gccccttctc ccctcgtcct gctggcaccg taggactgct ttaacccagc
      181 tttccaaggg ctgccgtgag gacagcccca accacacacc cggtgaagag agcacacgtc
      241 tgcccgtgtt tagcacccgg tccccccccg ttaaaacaca caagcaaacg ctcgtgttca
      301 ggtatttcca caccatgatt tattccatta tcatctcttc catctcggaa tgcaattaat
      361 ctgcttgcgt gttaaatgat tcagtgaaag taaatctttt atattcaggt aagcaattca
      421 gccttgtaag gttttatggg aattagattt tttgaagtct gtgttgagca tgcccataac
      481 tctgacagag ccctgcaggc tcttgtcttc accttcaaat cataagacag agaaatcaag
      541 ctccctctgt gctctcaatt ataccaaaaa acacggagca gaagtcttca gtaattcaat
      601 ccctgtggaa gcttcttcat actgtttgca ctgttggaac tgctgacagc agcaatccca
      661 caatccctcc tggtaggctg tcaaagttcc tcgcgtagcg tgagcggcac cgctccgtcc
      721 cagcgctcct cctcccgaga cccttaagca catgcatgac ttttgatgct tgctcgatac
      781 agtggccaag aggccaaaac acatcaccgg gagccttctc ctgctcctac aaggtgcttt
      841 gtactcaacc taataggatc cgtggcaaca tgtgggccgg ggccgctgta atttaatcgc
      901 cagtacagct gcataaacac tgtactaagg aatgtctgcc tgcaaccggg ctctttcttt
      961 gcaagagtgc tggagaaaat tcctgagtgc cattttccat atggttaatg agcaaatgta
     1021 tcatggccag cttttaaaag taatttgaat ttatgagttg cggcaggtct aacacatgtg
     1081 cgcgcggaac gccgcagacc caaggctctt ccttatcatg caacaccatg gcgcggttgg
     1141 ctgccaaacg acaccaaaaa gaagcactct gtatttttaa ttggctg
//
LOCUS       KCLA01000917             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14773upu ultra-conserved element locus uce-5288,
            sequence.
ACCESSION   KCLA01000917
VERSION     KCLA01000917.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-5288"
BASE COUNT          236 a          149 c          153 g          263 t
ORIGIN      
        1 gttcaattag tcaatcaagt gccatgttac taatgtgtca agaggaactt ttactactct
       61 ggcctagctt gttcctgagg caaatggatc tcatcatttt gagttaaaat gcaagagctc
      121 tatgtaaata gcttcttatc ccgtcacctg tccaggaaga acactatctc tccttgtagc
      181 agaatgcagt ttgaagaaat tcctaataga caaagtgatg taaaaggtgt tgtgttcctg
      241 aatgctgctt tgcagggtga tcaagaggct ttcacttcgt gaatacattt gctcacgcag
      301 ttttggagag tcgcccttca tttattcttt ccctttggaa gtactttcga gtgcaaatta
      361 ctgctatcag aagctttgaa ctgagaggct attattctcc atgctcagat taaattaatt
      421 ttgaacagtt taatgcagca tgtccaagct gcaagtccaa gtggtgtcaa atctatttct
      481 ctgctttttt aagatgaacc ttcaagggca gtataattca tggtgaacgt gttcttctaa
      541 tgtcttttgc taagcgttat tattttcttt catttgcaag tcatgaggct acaatgttaa
      601 cctttaccct cctaaaatta tataaggaat gcccactttt ctgttagacg tttcctacct
      661 gagcttatta tacatgaaat aaagaaaaaa ccagcgtgat ggaagaaagc tttaaaaaaa
      721 taagagagga aaggaggcac tgcatcacca tcatcatcgt gttagaaagg aattatcttg
      781 atcaaggtct ctgtaatata a
//
LOCUS       KCLA01000918            1102 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14788upu ultra-conserved element locus uce-4666,
            sequence.
ACCESSION   KCLA01000918
VERSION     KCLA01000918.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1102
                     /note="ultra-conserved element locus uce-4666"
BASE COUNT          335 a          185 c          223 g          359 t
ORIGIN      
        1 tcagcctgag aggtaacatc cagcagccct ggctcagtag ctgctggagt acaaagtccg
       61 tcttctcctc tgtaataaac tcgccgaacg ttgtgattat gagttctttc agcagaggaa
      121 aagaggccca gaactgaaga gttaaatagc actgccattg gcaagtgccg gaatgttttc
      181 ccccactatt aattgttctc tgtttacttt gatgctcaaa gattgccctg ttttacaagc
      241 atattttctt aattgtgtca ccttgtactg taagtatgtc agaggggaaa catttgcaag
      301 tgattagata cggacctttg tgtcatcaaa tgtatgaggt acataccctt ataggatata
      361 attgtgatct tttaatatgc ggccattgac ccggacttgt tattatctat tatagtttat
      421 aataatgtat ctctttatga ttaaatgatg atgcctggca gaacactatg attagcattt
      481 cagttattta tagattatgt cagagcagta ataaacataa aatgctgtta atgtgtggct
      541 aatgaaatct ggacatgaac aagtttatga attgatataa ttcatttgag tgttctaact
      601 gagctgctgg ttcttctcat aattcaaaag cttagcaggg ttcaccgatt aggtggtaga
      661 ctaatttgct acaaaaagtc aatgggtttt catcgtcttg ggctatcata cgcagcatgg
      721 ctgattgcat aaggactgta caaagtaatt ctcataaata tatttattaa gcttaatatg
      781 ttttgtgagg ttaggatggg atcagctact gtacaacata tgtggaacaa aatcaccgcg
      841 cctgagatac taaaaagatg tgttcagtaa aatcattcag gaccagatcg atgagggagt
      901 tatttgaatt ttaaaaagtg agcaattcaa tatcaaatat aaatgagagc cataaagaag
      961 gatacagatg attgactgag agttgtcgac atttcttttg ctttggcatc atcatttcat
     1021 ttcatactac aaatacagct ttaaacttcg cttacttagc actgaattag ctgagtgtct
     1081 ctgcaaagct aatggtgctg ct
//
LOCUS       KCLA01000919             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14804upu ultra-conserved element locus uce-1877,
            sequence.
ACCESSION   KCLA01000919
VERSION     KCLA01000919.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14804upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-1877"
BASE COUNT          241 a          145 c          142 g          249 t
ORIGIN      
        1 ttattgatcc ctcaagaaat ctgggctaca tgaaaatcaa taacatccaa gtgtttggct
       61 acagcatgca ctttgaccca gaagcaattc gagacttgat tttgcagctg gactacccct
      121 acactcaggg atcacaggac tcagcacttt tgcagttgtt agagatacgg gatcgtgtaa
      181 ataaactgtc tccacctggt caacgtcgtc tggacctctt ctcttgcttg cttcgtcata
      241 gactcaaact gtctaccagt gaagtggtga ggattcaatc tgctttgcag gcctttaatg
      301 ccaaattgcc aaacacagtg gattatgaca caaccaaatt atgtagttaa ccataaatgt
      361 gaagcacaac acaaaacctt gaaggagttt ttacagtgct tttgtggaac agtttatgtt
      421 tggaagagta aatttaaatt gtcttttcaa tatctgtctt atatcagtca atactgttgg
      481 atggcaattt acacacatga acttgctgac aatgaatata ttatacctgc agttttggtt
      541 tatgaatgaa ataaatactg acaccagtct agaagacatt ctacttttta caataaattt
      601 catttgtaat tttatatgtt ccgtggcaat gcttttgtgc attacatcct ctagagggaa
      661 catagaagga taccaataaa attttgtagc tgaacagtta ttaaaaagaa atgctgtggg
      721 attctttttt cttacacaaa agtagtaatc tcaatacact tttgtgtgca taggaac
//
LOCUS       KCLA01000920             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14819upu ultra-conserved element locus uce-6102,
            sequence.
ACCESSION   KCLA01000920
VERSION     KCLA01000920.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-6102"
BASE COUNT          207 a          156 c          181 g          206 t
ORIGIN      
        1 attcaggctg gggatggttc tgcaaagcac tgagcagcta cagctcagtg cagaaattaa
       61 caccgagtgt cagcctcact ttgtcttcct ataaagagtg ggatgaagga cattgacttt
      121 tggctacacc tgcacagaaa gggctctcag aatggtagcg gcacactccc aacatctgct
      181 ccttccatcg cgccgagctg taaattgaaa ttccattgcc atgtttttag actccgtcga
      241 agtaaggagc ctgttagaaa tcctctttaa actcaccctt atccaaacag gaagctgacc
      301 tctcaccccc ggacgtaaca gtacaccagt ggaaatttca ttatccccgt ttcagctgta
      361 ctaagtgaaa attaattgtg taattatctg gatgagcgca cgtgtaaaat tttacaatgt
      421 gccagttaga ttaagtaacg tgttagtggc gtgctttagt acagagtcaa ggctgtctta
      481 taaaaacctt tcaagaagtc cgacaagatt cggaggggaa gaacgtctgt ctgaacaaat
      541 gtgaacggga ggaaggaatg taatgcgtca gagcagaacc tgagtgaggt ttgagcctcc
      601 tctaaaggag ggttgtctgg tgtagaagag atcttctggg tgtcactttc acactgcata
      661 attgagtggt cagaggattt tgagtgtgat tgtttttttg aagtaccaaa tatcccactt
      721 ctggtagttc tgaggggaga cctcattcct
//
LOCUS       KCLA01000921             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14849upu ultra-conserved element locus uce-998,
            sequence.
ACCESSION   KCLA01000921
VERSION     KCLA01000921.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14849upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-998"
BASE COUNT          172 a          165 c          146 g          180 t
ORIGIN      
        1 attttacagg gactgcaaag ctcgagctgc ccgccgtgtg gctctcagac cacagacctg
       61 tcctcctgct gttttaatgt taaagtaagt tagcaaacgc tcccttctta atccccgggg
      121 gctgtctgcg cagcgacaca ggcgcgcgcc tttgcgacgg tggcagaagc gctcctctga
      181 agtaacgtgc ggcattaagt gaaatcgctt cctggaaaga tattataggt atctatattt
      241 tatttgccat ctccaacata tctgggcctt tatgacctta tttttgaaac gcatttcctt
      301 ttcacatttc ctggtgcaaa tggactgcat aaataagcaa tgtgctatga ggcttcagac
      361 tagccgataa accctttcaa ttttcatgcc agcttcttct tttgtaattc aaatctggct
      421 gaaaactggc agctctgaaa actgaaacaa gcactgccac aaataccttg taatgctatc
      481 gaccttgtct gcccatgcag tgagaaaggg ggatgcatat gtgtctgcag tcatccagat
      541 aacacaactc atttttttgg ggggataaca gcagccagcc ccggactgtg caccaggagc
      601 agtcattacc aggcgagctg gagaataagt ctcttcaaaa tacacggcgc atttgaacac
      661 cgt
//
LOCUS       KCLA01000922             670 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14865upu ultra-conserved element locus uce-931,
            sequence.
ACCESSION   KCLA01000922
VERSION     KCLA01000922.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 670)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..670
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14865upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>670
                     /note="ultra-conserved element locus uce-931"
BASE COUNT          214 a          127 c          123 g          206 t
ORIGIN      
        1 cttggggatc tgttttttct tgattagatt aaaaagaatt tgaaatctat attaataatt
       61 tagacctaga ttctgaaaaa gtccattgat gaaataaaac cccattcttt cagtagttca
      121 ctgtttgaaa tatgtttctg gctgaaaaca acatcaccat aaaaacctga ctaggaatag
      181 gaggctgctg caggaaggta actccagatc tggctagcag ggctatgttt tcctatgcaa
      241 atacagaaaa gcccagaaat tagcagtgac tgctaaatta acacacttga agagctcggc
      301 tggttccaat aggcagtcaa atagtcttgt tacattgtaa tggttccaag ctaattgaag
      361 tgattactgt tgctcaggag cagccctttt gaagtagaag tcttttaaat tatccataga
      421 cgttaaatgt cagacactat tgtgtaatta tactttgtaa acgctgaatg tcataagaca
      481 tcacaggtaa ttgaggttta cagagaagag ctttatctaa acctaattgg gcatcaactc
      541 tttgtcacta tttctaaacc taattgggca tcacattttt gtgccagggg atgctccaac
      601 atctcatcat agccctcccc catcactgtc agctgtgaag tacatataat agcatatctg
      661 accttctaaa
//
LOCUS       KCLA01000923             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14880upu ultra-conserved element locus uce-7607,
            sequence.
ACCESSION   KCLA01000923
VERSION     KCLA01000923.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14880upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-7607"
BASE COUNT          228 a          188 c          170 g          247 t
ORIGIN      
        1 gcccagcagt gctagttcct catacttcac ccaggctgtt ccctgcttct aacatacacc
       61 caccacttag gtctctgtcc aggcaataaa tacaatttca aaggacatat caagccagca
      121 attaatcctt ctgttcagac ttctctgcct ccagaactca gctcccccat tctgtttatt
      181 ttcacatgca tttaattgag ctctttgtga ttctgtgtcc tttgtaatgc acgtgtttta
      241 cacaatcaga aaagcttttc aacatgtgct gtgcattaaa tagcacatac atacagaggg
      301 gaaagaaaaa catttctgga agagtatagt aattttatag tccctggttt ctaatatatt
      361 tctacagcaa gcctgaactg gatcggcaag ttccagttta tcgccaagct cctgcacaac
      421 atcctacaat gtccaatctc tagcagagca gctgaactcc taaagctgtc ctcactggca
      481 ggacacttgt cagaataaat tgccacttct tgtcagttaa atatacatga tctgatagca
      541 ctctgctgat gacaccaact gtcctttttc ttgggttgta ttaggaaact acagtgtttg
      601 tcactagtgt tgccagcagg agaggtgatc attcccttct gcacaacttg atgaggctaa
      661 aatctcaagt tctgttcgtt ttgggccccc cactacaaga gggatactga aggtctggac
      721 tggggacaga ggttaaaagg ttggaacagg tgtcatataa agaatgggga tctggggctg
      781 tttgagggga aattgagggt gagatgttat tgttctctac aaccacttga aag
//
LOCUS       KCLA01000924             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14896upu ultra-conserved element locus uce-5853,
            sequence.
ACCESSION   KCLA01000924
VERSION     KCLA01000924.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14896upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-5853"
BASE COUNT          164 a          145 c          121 g          176 t
ORIGIN      
        1 agaaattaac ccacaacaca catctgccca gccccgctcc ccgctgcagg gacagtccca
       61 ccaacccctg gctacaggag cagagtccat cagtggggaa tctccttgaa gatctgtttt
      121 cccagcatgg aacccatttc acagtacctc tttccttcag gtttccctcc ccctggggtt
      181 gagtaacact agtgtggcac tggcttcaat aagtcacttt ttattgtgtc taatcatgtg
      241 caaatgtgtt aaaattggta gtttttagca aagagttatg gaacatatta ccgcgaggca
      301 ttgggtcatg gcgtgacaat gattggcccc acgccactga aatgttttat ttaataatgt
      361 gggaatttca gcgtgttttc ctttcattat ttttaacttg aaaacagaaa cagaaagccc
      421 cttctttcaa gttaaaactt cgccgccgcg agtccgtcaa aagcaatata agcatctgga
      481 tttgaaaaag ggagctttcg caggatgtta atttaatata ctggcatatt tcatgcatac
      541 ttcttatatt ttgtgtgctt gaagccatct ccacggtggc cacccaggaa caacagactt
      601 ttcaaa
//
LOCUS       KCLA01000925             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14910upu ultra-conserved element locus uce-1713,
            sequence.
ACCESSION   KCLA01000925
VERSION     KCLA01000925.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14910upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-1713"
BASE COUNT          216 a          158 c          188 g          258 t
ORIGIN      
        1 ccttgtcaga aaaaatcagc ttgagttgca gctgacagaa tgcagagctt gcagtgcagc
       61 taggactgtt caaaacagct ccacagcccc acaagcctcc cgcatgaaga aaatatgttc
      121 ctcctgggat ggcgcagggg ttaatattca tgagaacgcg tgatctgcgg tggtattttc
      181 ccaaaacttt gtaaaagctg ttttgagggt ggcaaatgaa gggcttctca ttagagcttt
      241 ggtggttatc aggaacccat aagccttgtt ttgctggctg cttagtggtg catttaataa
      301 aataaagatc gctcggtggt gccatgggca gcgtgcaagg tgatagccat atttgcttac
      361 tgtaaataca agagaaaatc acacacaaac cggctgtagt tgtgacaagt actgagatcc
      421 ctctttacat ctgtatttct ggaccaaagt gcaattagtt ttcgtcgcac aaggatttct
      481 gtttatctta ttctgcttga ttacttgagt ataatcgcac cgtttgcttc actgcttctg
      541 gtagtaagct ccagtttaaa gagcagagga tgagtgtgtg taaatatagg gaattctgct
      601 gtaagactct aatttatgca tgtggatggc agcagtttct tcatttattt ttctccttta
      661 ctctttcttt ccacaaggtt tggttcatgt acatcagatt cctcggctta atagcttgat
      721 gtgtgatgtg tcagacacca aggacttggc ttttagatta aaaaggaagc tgttctccat
      781 tgaggtaaga gaaacagttt tgtttcacta tttagaaccc
//
LOCUS       KCLA01000926             899 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14926upu ultra-conserved element locus uce-2811,
            sequence.
ACCESSION   KCLA01000926
VERSION     KCLA01000926.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14926upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>899
                     /note="ultra-conserved element locus uce-2811"
BASE COUNT          265 a          187 c          172 g          275 t
ORIGIN      
        1 tcgaggtccc ttccgatccc taaggattct atgattctgt gaaaggaagg gttcaagtat
       61 ccttattatc caaacatctg taatttttag tgccccttta ttacacagca tgcccagtgt
      121 catacctctg gtgagtaaac gactcttaag ttgccaaatg gcaagtgttt tgagggattc
      181 ccgttcacac aaagatgcag gttctttagc ttagtgacta ctccattgat ctcccaagcc
      241 ctgtcatccc tgttgtgcct gctgtttatt gtttcttgtg tttaccctac agggctctat
      301 gaaaactatc caaccaatgc agaaccagaa tgctgtgatg tcagatgggg actattatca
      361 gatcatcaat ccaaagggac tataaaaaca agtggctcga caatgtgtca caggacatcg
      421 ctcacagttt catcagcgtc aagactgtgt aacagcagac ttaaactgtg tgttcttgtg
      481 ttaattatct tgcatacagt acttacagtc tcagcagcac agaactcaac aggactggac
      541 tttggaggca taacaacttt ggaagataat tcaaccaacg aggaataaaa gaaaggattc
      601 atcttatatg acagaaacac taaaggccca aatgaccagt caaaaatagc aaggactgag
      661 tgctttaccc tcctatctct tctcgaatga ccttttgggt aaaatgaaaa gaacgggcca
      721 ctactcaaac aacaaggaca catgaacaca gctttttatt gaataaaagg ctgtatggtg
      781 acttaaattt ctcacaccat tttatacact gtgttttaat gtttggagtt tctttttctg
      841 tttgtttttt gcacttgtta atacaggatt ttatttttgg gacggtttct caaagttaa
//
LOCUS       KCLA01000927            1156 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14941upu ultra-conserved element locus uce-1813,
            sequence.
ACCESSION   KCLA01000927
VERSION     KCLA01000927.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1156)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1156)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1156
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1156
                     /note="ultra-conserved element locus uce-1813"
BASE COUNT          326 a          230 c          285 g          315 t
ORIGIN      
        1 acctcaaagg gtgtggtttt gttgtgtcta gagctactcc ttgtgtttgt ttgagcgtat
       61 gagtaaacac agcttagaga gcaaacattt gatagcatag tgtggtgtat caaaccccac
      121 aggtgcctag gtataagcag atctgaaact gttaatgaac acttgaaatg accttctgtt
      181 cagcaatacc agtagtcgta cgtgtaattt atatatatgc ttattgccac attgtctttc
      241 acctaacctt tgtgtgagag aaacttctgc cggtgtcaaa ggaccaggag gacattagca
      301 gctgatattg gtgcctttcg ggttctgttg ggtatgtctt cccactacca ggctggcttc
      361 tctcgctgct gccattgacc ttgcaaacag ctccgacaaa ggtcggaatg gattcattga
      421 tcagccaggc caagcatatg acagtctgtg ccttaattga atcccaaaag ggggcagact
      481 gggtttttat tacagaggcc agacgatagc actcattaaa agctccacag actgtgtggt
      541 ttactaatta gtttattata cagacacctt gacgatgggc aaagttgtca ttttgccctt
      601 tatcgcacag gggatgttgt taaaagttta atcagctaac actgaccaac ttagcttggc
      661 aggctgtgga cagtcattac cgaggtcacc cctgctgtag caattctgac agggtcacag
      721 catgaatctc caataaaaag cacgttacat aaggtaagag tgcacctgaa aggaaaccag
      781 gaaaagagat gtgctcagcg gggagtagga aacagatgga ctgttaggac aagtaaagcc
      841 tgttagagtt tttctttgct tacattgttt aacatatgct ttttggaaat aaggggagct
      901 cggagctagt gctgtgatat gttcattaca acgcaagaga gcctgaacca ggcggtgtgt
      961 gaacagacat ggagtatctt tggattcgag aaagcagaga tgatattgct agttaagctg
     1021 tgcctaacac ccaggtaatg ggctggtcca gagcaaaagt cacgttcaca cagggaaaag
     1081 cacagagaga caatgcaagc ttcctcataa aggtgctttc ctttcctgca cagggtaggt
     1141 aactttgtaa ggtagc
//
LOCUS       KCLA01000928            1106 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14972upu ultra-conserved element locus uce-2700,
            sequence.
ACCESSION   KCLA01000928
VERSION     KCLA01000928.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14972upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1106
                     /note="ultra-conserved element locus uce-2700"
BASE COUNT          357 a          213 c          233 g          303 t
ORIGIN      
        1 tggcatctct gcatggcagc tggtgagaca aaacaaaaca tcagatcact gcctagagag
       61 tctattggca agtctcagtt gcatctggga acaatggccc atcaaagcta actatgtatt
      121 gttaatatcc ctacctaatc caggcagcag gaaagaaaag tacaaagtcc tctaacaaat
      181 ccttccaatc actcacatcc tcattttcct gagtcttgaa aacatacagc agcttctcca
      241 gtgccaccat aaacaccatc tagggccaga ttagggttga gagtgcatct gctgctgcca
      301 gaaggtacat ttccacaaac tacagagaag ctgaagagat cctatttccc actcatacct
      361 caccagtcta agaggaaatt agggtactgc agaacttccc ttcctgataa tactgggggc
      421 tgagaaacat gttcctgagg gctgaattat tatttttacg atacagaata tttgaactat
      481 tgggttctaa gcctcacaat cttaagcttg tagctattgg catgtttgac attttaaact
      541 atgaaatacc aacctatttt gaaattgtcc aaatcattag ttgtggaatt ttcctagcac
      601 ttcatgaata ccactgttaa ttgggcaatt aactcaaaac tacagaatat gctgtgatgg
      661 catgatatga tataagccat gtaaaagaag gaacagccaa gcaactcagt atgttgaaag
      721 atattaatga agtggcaaaa tctgccagaa aaataataat gggtgatttt aactacccca
      781 atattaactg gttgaataac acatctgtac atggtttgga gaagcagctt attgatacta
      841 taaatggctt ctttttggag cagctccttc tgaagcacag aggaggagga gttccactca
      901 gtagttaatt tgtgtgtgtt tgtgtagaaa gcaagcatgg gtgttctgct aaacaacaat
      961 ggccacagga caatgagttt gaatcccagt gatgaagtat ttcaagtggt agccaaatag
     1021 ttaatggcag gtgggtgggt gaggaaaaac ccataaacaa ctatctcaaa gggaaggctg
     1081 tttgggggga atgaaggcat ttattc
//
LOCUS       KCLA01000929             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 14988upu ultra-conserved element locus uce-2168,
            sequence.
ACCESSION   KCLA01000929
VERSION     KCLA01000929.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="14988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-2168"
BASE COUNT          220 a          110 c          122 g          246 t
ORIGIN      
        1 aaaatgggat aaaattctat tttctttcac agattctgct cttcagggct agttaatgct
       61 cagtatgatg ttttttgtat tattgcagag taagataatc ttgttgaaac ttactgttta
      121 catcttttct taattttctc agaaagccta aattacctgt aagtcgaacc ataatgccct
      181 aaaatgactt caaaaacttt ttggttgttg acaataaaag aaaaaaaccc ctgtcagaag
      241 ccaggaaatc accaagcaag cctgataatt attcttaatg gggaagatga gcacattaaa
      301 aaacaaatga atacatcagt gaaatgtaat tgaaaattga cctggcaata gttcattgca
      361 tctgaaaatc cgcctttgta tcatcgtcat aattattatt gggtttgttg ttactgccat
      421 tcagggagca taacgaacag ctttgctctg cagagtccca agcttttgag gatttgactt
      481 ttcttattct ttatttcata ctgctacaca aactattcgc aggatatgtt ttcaatatct
      541 gtattaggtt ttgttattga aatgttccaa gttaaaccaa tttacaaata tgttcaaatc
      601 atcattggga ttttaactgt tttgctgtgc aatacagaac tgtattgact gttaatcgat
      661 gggtttgaac atgaggtttg tggaggtttt taaaagga
//
LOCUS       KCLA01000930             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15003upu ultra-conserved element locus uce-7184,
            sequence.
ACCESSION   KCLA01000930
VERSION     KCLA01000930.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15003upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-7184"
BASE COUNT          233 a          137 c          148 g          273 t
ORIGIN      
        1 acactgcata taatttgact gaaattaatt ttgttaaaaa tcttgcaact gttgatggct
       61 ttccaagttc atcttatgta tccaggagga tggaaaatgc atcattaaaa ttctcagcct
      121 tacattttgg taattttaag actgtaaaat tgtcatctat gtttccacat gaaatgcttt
      181 aataaggagg acaagtttat gtgctgagcc tttgtagtcc ttcagttcag accacgcttc
      241 aagctttctc acccttcctt taggcaaatc ccttagaagc agaatgtttc aattttacac
      301 gtttcgtgtc aattttccag acagaaaagt agcccctaga cattagacgt ttagccacgg
      361 aaaggcagtt tccttagttt tatttgatta ctagaagtta aattcctgct gatagttcag
      421 gactgttagt ggttacctga ctatttgaca aaaaccattt cctctccttt atttaacctt
      481 tgactcatga atgtaaaagt tttatcagag ctgcagtaga agcaccagtg aggtagaagt
      541 ctacttaagg cagcaagtta atgcttgaca aagtctgagc tcctgccttg tggctcactt
      601 ggattaaaag agaatgccaa atatgttttt aattaaccat aaaatagctt ggggttttgc
      661 cttagtgaca ggcagtggct gtacttttaa ataaagactg ctgtgttctt agctaggaat
      721 tgtaaattgt aaaaacaata ctacatatgt tttgatgttt gtctttattg taggagaagt
      781 gttttgtcaa c
//
LOCUS       KCLA01000931             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15019upu ultra-conserved element locus uce-4850,
            sequence.
ACCESSION   KCLA01000931
VERSION     KCLA01000931.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15019upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-4850"
BASE COUNT          190 a           84 c           94 g          174 t
ORIGIN      
        1 aaaaataagt gaaaatgggc agaacttgca tttaaaacat actaccgtac tatgaacaga
       61 gtgtaagaaa aacagcttat aacatatgtg caaccaagag cttttcacaa tattttctgc
      121 aacctcttta aaagtatttt taatgacaat tatatttcag ttggacacaa atgtatttat
      181 tttaccctag caatagaaca aaatataatt tctttagcca tttttctcat gataacggtt
      241 cattgtacag ttgaggaaat atatgaaata aggcctgtgg cttgattgct agtggttaaa
      301 catgtattta atctttgccc taatggaaaa gatttgcagt gaactgcaaa ctgatgcaga
      361 atatctctcc tgcttttgca agtcttgtca ggaatagtaa ggtacagtaa atttgtccca
      421 caggatttta gagcctacgt cttgtatata atacaatgta ggcctagaaa aaaaatggtg
      481 cagccatatt tacaaattta gttcacaaac tgctgcagta aaatggctgg aaagtgttta
      541 tt
//
LOCUS       KCLA01000932             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15050upu ultra-conserved element locus uce-3775,
            sequence.
ACCESSION   KCLA01000932
VERSION     KCLA01000932.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15050upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-3775"
BASE COUNT          162 a          200 c          240 g          151 t
ORIGIN      
        1 tgccctctcc ctgtgtatgg tcagtgttgg ggcagcagcc cagtagtgtg gctctctggg
       61 tgtggaaggg cccgagggca cctgatggca tcttctgaga atttaccctg cagccagtcc
      121 caacccctgc gcgtccacgt cctcagaatc cccatttctt gaagcgatgt gactctggct
      181 cagcctgagc agctaccaag gaacaagcct ggaggagctg cccatcccag tcccatctcc
      241 tgagctccct gtctcctcct gccctttcag gaacagaagt tttgccagcg ctacgaccag
      301 ctgatggaag cctgggaaaa gaaagtggag cgcatcgaaa ataacccccg gcgccgcgcc
      361 aaggagagca aagtgcggga gtactatgag aagcaattcc cagagatccg gaagcagcgg
      421 gaactgcaag agcgcatgca gaggttagag gagaagcggt aggaaggggc tgagctggta
      481 tcagacagcc tttctctttt ttgggggctg ggtgtggggt tgggttgtgg gaggagaggg
      541 ctgggatggt ccgtttctcc ccttctgtgg caggcagaag ccagcaggca agcagcctgg
      601 ctgcagccaa gagtgaaggg aaaacatcag gaatgggatt gcccaggtcc cctctgctcc
      661 tgacctccta gagcaagggg cagttctggg ctccaggcca gtgctggtca ctgccttact
      721 ggtgggactg agtgaagatg tacaggttgc cca
//
LOCUS       KCLA01000933             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15065upu ultra-conserved element locus uce-7081,
            sequence.
ACCESSION   KCLA01000933
VERSION     KCLA01000933.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15065upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-7081"
BASE COUNT          212 a          163 c          157 g          254 t
ORIGIN      
        1 tttttcttcc tgtttttttt aaagcaaagt ctgggaatac tgcccatcga tcaatagatg
       61 tatgatgaag gaacttcgtc ctgctaccta tgaccagcgg ctatgttttt tcaatgattc
      121 cgcaggagtc aaaaactcaa caaagcgaat cgcggatgct gtaaagggag catgctgctc
      181 atgtctgtga ccactgtatg caaagcttgg cattagtcac cgccaggccg cctctgacag
      241 ccctgaagtg agggagatta atgtgaggca ggggcacttt attattgtca ttctgttctt
      301 tcacactctg cctctgactt tcaattttgc tccagaatta attgtctgct ccctacagta
      361 tgactgatgt agaaggatac aagtaacata ggcacctggt tctggccttg acaatctgac
      421 tcgttgttgc aggatgtatt gtgtacagtc aaattcaggg acagacgggc atctttcaaa
      481 gaaatcaccc aatgtttctt ttgacttcag tcagattcaa ctgtagatta tccttctcta
      541 agaacaattt ttttcttgta gagatgctaa caaaatgcca gtgtcattat taagtaccac
      601 tacatgatac tattgctctg ttttatgcag cttcatatga ggcctttctc tccacactac
      661 ccgttttatg tttgaaggta gtaaattagt catgtagcag tgttaaatcc cagccctctc
      721 agagttaagc attgttgtga gaacattata tacagtatct ttgacaataa aaataaatgg
      781 ctgttt
//
LOCUS       KCLA01000934             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15080upu ultra-conserved element locus uce-258,
            sequence.
ACCESSION   KCLA01000934
VERSION     KCLA01000934.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15080upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-258"
BASE COUNT          126 a           77 c           64 g          126 t
ORIGIN      
        1 tttcattgtt ctctaaaaac taataaagag aaacaagcac ttttcattca tcttgaagta
       61 attttctgtc aggtttgagc cccttgtggc ctacagcttg tgcattgctg gctgtgtgat
      121 acaacaacta tttcaattta ttttacaaac tctggccatt cacatgtcag ttagtgttca
      181 ccaagccggc atctgaaatt gtgcagttaa cgagttttac aacatttcta tcaagagaaa
      241 ctgtttagca taactgactc ttaaggagtt attatacctc taaaaatcca ttttaagggg
      301 cattatttaa ataaaataga aaaacggttc actgcctctt aaaggggcta caaaaaaagt
      361 ccatcagatc cagtgcagta atcctcagct taa
//
LOCUS       KCLA01000935             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15094upu ultra-conserved element locus uce-2600,
            sequence.
ACCESSION   KCLA01000935
VERSION     KCLA01000935.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15094upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-2600"
BASE COUNT          163 a          161 c          132 g          176 t
ORIGIN      
        1 ttttttcaat ctgtctgaac gttgtctccg cctgctctgg ccttcagaga gctcaggaca
       61 cgtttgtggc aggtgaaatt ttctgtccag gcagccattc taacaggcag catcagctgc
      121 ctgaggcaca ctgccttcac actcttttgc tccacagctt tagcttattc cttttctcag
      181 aagagctcct tctaatgtct acacaccagc aaacaaaaca gatggggtgg tggaaaatga
      241 ataattagcc tctgcaccac tgagttcaag ctaatactct gaaccaggta tgacatcaaa
      301 tcatttccag tgggacaaca aatgtcatga tggagatgag aatttttcag atgcctcttg
      361 tcagaagcaa acacgagaaa ggttttaact cttccagtag tctgcaagtc cccaaggttg
      421 tgttcgttgg ctacaagatg gaaatctctt cttttctcag cgcagcgatg gccgccacca
      481 gcacaagtaa tcccttaggg cccagctttt ctacctcagg cctaaagact cctttttgtt
      541 ttgtaccaaa cacagcctat ttgtgtctat tttgtaggaa aatatacagc ctccccgcga
      601 agctgcgcgg ccggcgcctt agaaatggaa at
//
LOCUS       KCLA01000936             439 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15110upu ultra-conserved element locus uce-6447,
            sequence.
ACCESSION   KCLA01000936
VERSION     KCLA01000936.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15110upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>439
                     /note="ultra-conserved element locus uce-6447"
BASE COUNT          147 a           87 c           78 g          127 t
ORIGIN      
        1 ttaaaaagtt tttacatgca aggtaacatt gcaggttata agctatacaa ttgtgaagtg
       61 atactagaag cctgttatta aactgacgtg caaatactat ctgaaaaaat acttttgtga
      121 ccattctctg tgatgacaga gttcctctat cctgagccat ttattgagca cacctgatag
      181 gacatcatct gatcaaaact ggatacctga ctttggagta tgagaatcat aaacttgctt
      241 acggtctatc tggtctgcaa acacttcccc atagatcatc caataaggca tgtaaaaaat
      301 gtttttcgcc agtttccatg aaggctcctc attggggaag agaattgctt gtcttgcaac
      361 accaaagctc atcagaacca ccaacatgat gataacaaag tacatcatgt ctatcatctg
      421 aatgtaataa caggaaaag
//
LOCUS       KCLA01000937             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15126upu ultra-conserved element locus uce-740,
            sequence.
ACCESSION   KCLA01000937
VERSION     KCLA01000937.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15126upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-740"
BASE COUNT          228 a          195 c          170 g          283 t
ORIGIN      
        1 aaaaatcccc tccaacagct tttccccttt ttgttcttgc tgaagaaaaa taaaaaaaaa
       61 cccaggcgcg tttgttcctc tctactttgg aagcaccccg tcccataaat attcattaaa
      121 aagaagcctt taaaaagtgc taagaaatag tttatactct tgaaaaggct agggtctggc
      181 atttgtgact tgcttggttt ttttccccct ttctttcctc tctattttca agtatttggg
      241 aagagaagtg tgtgcagggg cgaaggcggc cacgcgagtc ccagcagctt tctttgagta
      301 gccacgtgtc cgtctccaaa ggactctcca agttaaccac cttcattgta catttaaccc
      361 acatcgacag cgtcctcccc tccataaaag gatttgcaat ttcaagatat tctagcttaa
      421 atgtttctga cagttccctc gctttttttc catgagctgg gttatttatt ttagctgtgc
      481 caaatgggtc accttggaga gatgtttgtg cgcaaagagt ctttgcgcgc attcagactg
      541 aattttttcc aactttcctt gacggggaaa ccagctgctg gtttgtgaaa agacggctta
      601 ttaattgttc tttgtcatgc agaattgctt gatttctaaa gaaacttaca aagggtcttt
      661 ttcaggattc aagtattttg tttcgtgcgc atttccaacc catcaaatca gctgcaggca
      721 tcttaccgtc taccagaccc aggtactgac tgcctgctcc ctttgtgtgc ctttaatgct
      781 cttgtaaatc gagcagactg atttgttaca agctgctctt ttaatctgat agataagaga
      841 gaagtctaag aaaagtctta aacgaaaaat tagttg
//
LOCUS       KCLA01000938             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15141upu ultra-conserved element locus uce-1456,
            sequence.
ACCESSION   KCLA01000938
VERSION     KCLA01000938.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15141upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-1456"
BASE COUNT          205 a           94 c          136 g          251 t
ORIGIN      
        1 atatggttta tatataaata acaggaagta aataaatgta catttcgtgt tttgtgcata
       61 ttacagatac ctaatagaca gacatatatg ttgaaatcta tgtttcgcat caaacctcta
      121 cagtatgctt catgagggag acaagaccca tgtgttttgc agaagctttt aaagctgttt
      181 catttatttt attagccttt aatgaatgta attagaaccc aagtaattaa atgcaattgt
      241 gctcagtatg ttcctgttgt aaattgccct aaacaatgtg catggtgtga acaaatttgt
      301 gggattaata gaggatagat aatgtttttg gatagtattt cacactaaac ggccgcggag
      361 agaaacaaag aagctggcgc agtgtcatta atcttagtca actggcagtt ctggtgtaat
      421 ttgcatgact taggcagtga cacaagatgg ggctagcttg ggatgggtgt tagatcacta
      481 ggatacatat atatttattt ctttttagta gtctgattta taagtagaag ttttgtttcc
      541 agaaacagat ttgttctgtt ttcatctttg tttttatctt agattaatag aattactggc
      601 agtatattct atgcgtttct ttgtttttat agttagcatc ttggtttatg gatattaaaa
      661 aacatctgtg cgtccttgtc atcaca
//
LOCUS       KCLA01000939            1018 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15156upu ultra-conserved element locus uce-5422,
            sequence.
ACCESSION   KCLA01000939
VERSION     KCLA01000939.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15156upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1018
                     /note="ultra-conserved element locus uce-5422"
BASE COUNT          330 a          223 c          183 g          282 t
ORIGIN      
        1 acctacatgt atgcagtggt gaaacaccgc atatatgttt ggcaagatgg aatcacacac
       61 tgtatagttg gagtgacaag tgactagctg agagtactaa agaggaaaat gatgtcttga
      121 gatctgactg ggtgattata tttagactct gaaacaccca ctgaaaggag aatcatctga
      181 tttcttaagt aaacccctgg aataaacacg ggatgtacag tattagtctg taacctagca
      241 agttactgca atgtaggaca cggcgtggat tacaaaagtg cattaaatta cgtattgtta
      301 cagatttccc ccccttagga tgcactcaac actttcctcc ttcctgtctg acaatatgtt
      361 gccatgctat aaaagcccta atgcccattt caacgattag ctgtacatca gcattactac
      421 ttcaaatcca caagtttcac atcaagcatt aaatgggatg aatattgatc tgctaaagag
      481 gatttattta tttctagctc tatccaaaga tcaactacta gcagcttttg gtggatctgt
      541 tgagctctca cagcacaaag ctactgcata catgacactg gacttgacat ttcagttctg
      601 gaagaaaacc aaacagtaaa ttcactgcaa taatcctaga taaatgagat gatcactgga
      661 aaagctgaga tagttaagtg gtctatcaga aaagtccaaa ggatggtatt gaactgttgc
      721 tatattgtaa cctctcatga ccacacagca caagatcacc ctatcagatg ccaataactt
      781 tgcctttaaa aagcaccatg ccttcagatt atcttggaag acttcacaat tatgttctga
      841 gctgaaaact gtctactcaa cataatcggc tatgtatcga taccgcagta tttacccatt
      901 cattccacgc tgctcagtca ataacacact aacaactgca tcacacgctc acgaaataca
      961 gatacagact tcaatcctca cagcacagct tgcaggtttc ttgcaatgtt agagctgc
//
LOCUS       KCLA01000940             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15172upu ultra-conserved element locus uce-7617,
            sequence.
ACCESSION   KCLA01000940
VERSION     KCLA01000940.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15172upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-7617"
BASE COUNT          307 a          167 c          134 g          267 t
ORIGIN      
        1 aacacatact attttctatt ttaggtaaaa aataactata ttggcagtat gacccttttt
       61 gactcatgaa ctccactcct gcgaagtgat acagcagaac acactgaaaa aagaattatg
      121 tacacatcca agcagttgcg ttcttagcca agttggagtt tcacctcccc tgctcctaaa
      181 tcaattacag ttaacatctg gaggcttttt aaggcaagca ttgtttgtac caacattact
      241 taatctcctg gttagcctgc gcttaaacag tccacagaga accgaaaaat acagcaagaa
      301 agaactggtt tctcgtaaag taactacagt cttgttatcc taaagtgcta tcagttaatt
      361 tatgactatc agagtgggtc agactctaat caaattgtag aaacatttcc aaagtgatta
      421 ttcaatcaaa tgactaacat ggttaattag gagccataaa cattgctctg aagttcatca
      481 aagtaatgac ttgcccagaa aaattactac taattaaatt gcctgctgct ttcatttcta
      541 ccttatctaa taaaaagtcc aaccaatgaa atttagtatt gcagttttaa attgtactaa
      601 atgcttgact aagacccaga agtactttta caaactaaac ggagctactt ccaaagaaaa
      661 cattttagtg cagaaattac aaagcaatta gatgttttct tctccttaaa gtattgcttc
      721 aagacaacaa agcaacagaa gtaggtataa aataatttca gggcaagata aagtgtttca
      781 gttgactgat tctatcacct tccactgatt ttactctttg aagaaaaaag tacctggatt
      841 taggacacac aagcagttta tttacttttc atgaa
//
LOCUS       KCLA01000941             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15186upu ultra-conserved element locus uce-5889,
            sequence.
ACCESSION   KCLA01000941
VERSION     KCLA01000941.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15186upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-5889"
BASE COUNT          264 a          138 c          134 g          249 t
ORIGIN      
        1 agtagtaaca caattattaa aatgagttta tgccttcaac aactgaaatt aaattccaga
       61 accgcagtgc aaattattta ggtgaattaa acctgggtat ctccccctga tgagtattta
      121 atggtaggaa atttgagctg gatccaggat gtgtttcaaa aaaaaaaaga gagagcactc
      181 acgacatccc tccatataaa aatgttttgg tgatcatcct gtttaaatag taacatttta
      241 tttttctaag cacttagatt cttgatctga atccatattc atggaagtct gctgtaatcc
      301 actttaccac ttaatgttgc aattcaaatg ttcagtaaga agcaaagccc tccagaataa
      361 agcatgaata ttaccatgtg gggctgtaaa gagaagacta ttagaatata tcaccaacac
      421 gctaggggac catttagtgc actgctctaa atacatcatt taattacaat ggagacatta
      481 cttcatgttt ctactgatgt aagtattatt agaattcatg atattcgcag gctactgtgg
      541 gccattacat tggccataag ctattccata agatttacta ctaaaggccc gcaagggtat
      601 ttgagcattc atggattctg tggcagtagg cttttatcta agacacataa gtgagggaca
      661 accgagttat tatctctaag aaacatagct taatattttg gattctaaag gttaaggtac
      721 cataaatcct caattactct gagatatcac ataaaaagac atttttattt tattttactc
      781 tactc
//
LOCUS       KCLA01000942             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15202upu ultra-conserved element locus uce-5072,
            sequence.
ACCESSION   KCLA01000942
VERSION     KCLA01000942.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-5072"
BASE COUNT          153 a           83 c           88 g          177 t
ORIGIN      
        1 taagcacagt aagtacttca tgcatctcct tttaagtaga atatattgaa catgtcaaaa
       61 aatgatctgc aacctttgag gttttagaga tattccatgt gtacttataa gacaatgttc
      121 acatactttt ctgagatatg gttttagtct gcctcttgaa gtacaaaagt ctgatttata
      181 taagaactac tcagatacat taagtcaggt taattatttt tcttatcagg acatgagagt
      241 tctttaactc tcaggagttc atttctgtgc cttctaacct aaaaagaatt cttaagggct
      301 attataagat ctttattatt cacttgtggc ttattccatt ggagctactt gaaagaaatc
      361 aagggtccat aataatagct gctatcctaa cctggtaata ggtagattcg tctttgttag
      421 agtggtttgt gagtgcatac tgtaatagct ctggcttcat gcagctcttc aggctgataa
      481 taatgtacaa ctcaaaatag c
//
LOCUS       KCLA01000943             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15217upu ultra-conserved element locus uce-3637,
            sequence.
ACCESSION   KCLA01000943
VERSION     KCLA01000943.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-3637"
BASE COUNT          240 a          104 c          132 g          215 t
ORIGIN      
        1 tttatgtttg acaaaaggct aagcaatgca ttagactaaa ttgttcatta cacttttatg
       61 caagagagta taattacatt aaaaatagcc ttaacagcaa gaataaaatt gatcatagga
      121 tagtgctaat gcatttatat gcaacgagag caggtttaat tatagtacat ttaagattgc
      181 tatgccaggg gcaataaact ttacaacagc acacaaaagt ttaataagcg tggaacatca
      241 taagaacagt gtagactaaa ccttccttgc atccgaaagc tgaagtgaaa agaagttttt
      301 atttattgcc tcaggtaaaa aagtctgtag aaacagataa gtgatgacaa agctttgatg
      361 ttaataaacc caaatggaag tcagaaatca aagtgtgtaa atggctaggt tataaaaaga
      421 aagatgacag agttataccc tgtaattagg tgtaatttgt gcttttggca cagctatttg
      481 tcctgcatga atgagtggtt gtcttatgtt ttcttgtccc tgtataatag aactgtacta
      541 tgtgcacagc ccacttaaaa gctccttttt ttttcagaag tatttgaaag tagcaagcat
      601 atcgatctgc tcttatgtga gtactggagt tggtttatcc ttcctagtac ttaggacctg
      661 agtgtttata aaacacttac agctagaaac a
//
LOCUS       KCLA01000944            1104 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15233upu ultra-conserved element locus uce-6642,
            sequence.
ACCESSION   KCLA01000944
VERSION     KCLA01000944.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1104
                     /note="ultra-conserved element locus uce-6642"
BASE COUNT          305 a          343 c          229 g          227 t
ORIGIN      
        1 agcagcagca accgcaacca acccaaccac cccaggcacc ctctggcccc ccagggcagg
       61 gccatcctca gcacatgcag caaatgggaa actacatggc tcgtggggat ttttcaatgc
      121 aacagcatgg tcagccccag cagcagagga tgaaccagtt ctctcaaggc caagaaggcc
      181 tcaatcaggg aaaccctttc attgccacct caggacctgg ccacttgtct catgtgcccc
      241 agcaaaatcc cagtatggca ccttctttgc ggcactcggt ccagcaattt caccaccatc
      301 cccctgctgc tctccatgga gaatcagtag cccacagccc cagattctct cctaatcctc
      361 cccagcaggg tgctgttagg ccgcaaacac ttaattttag ttctcggagc cagacggtac
      421 cctcacctac tataaacaac tcagggcagt attctcgata tccttacagt aaccttaatc
      481 agggattagt taataataca gggatgaatc agaatttagg ccttacaaat aacactccaa
      541 tgaatcagtc tgtaccaaga tacccaaatg ctgtcggatt tccatcaaac agtggtcaag
      601 gactaatgca ccagcaaccc atccacccta gtggctcact taaccaaatg aacacgcaat
      661 ctatgcaccc ttcacagcct cagggaactt atgcctctcc acctcccatg tcacccatga
      721 aagcaatgag caatccagca ggtacacctc ctccacaggt gagacctggg agtgctggaa
      781 taccgatgga agtcggcagt tatccaaata tgccccaccc tcagccgtca caccagcccc
      841 ctggtgccat gggaattgga caaaggaata tgggcccccg aaccatgcag cagagtcgtc
      901 cgtttatggg tatgtcttca accccacggg agatgggtgg gcacatgaga ccaaatggtt
      961 gtccaggtgt tggccttgca gatccacaag caatacaaga gcgactaata tctggccagc
     1021 agcttcctag tcaacagcag tcttttcaac agcaaatgcc aacctgtcct cccatgcagc
     1081 ctcatacagg gatacatcat cagt
//
LOCUS       KCLA01000945            1329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15249upu ultra-conserved element locus uce-353,
            sequence.
ACCESSION   KCLA01000945
VERSION     KCLA01000945.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1329)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1329)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1329
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15249upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1329
                     /note="ultra-conserved element locus uce-353"
BASE COUNT          341 a          289 c          290 g          409 t
ORIGIN      
        1 agccagtgtg tttcacttta ggtgctaatg gatggtttgg aacttgtttt gtattttgtt
       61 tcaccaggat ataaaatcca catcgtctga agccctgtct gcagcgcagg tgctctgcaa
      121 aaatatctcc tcccgctgca acagcttcac ccccactacc tttggctgtg ttgggagctt
      181 gggcataggt gagtgaacag cattttaagc accgtgttta ttcagtgtgc gctaagcagg
      241 cttagataat acgatattta taaagctccc ttctccctac actcgagggt tgcccacctt
      301 gctagcactg ctgctgctga accagtatta gcagcggtga ggggtggctg taaattttgc
      361 ctcatggaga caaggcttac aaggtaagca ggcaaacctc ctgcagcaac cgctcgccta
      421 ggaatggaac cttttatttg ctgtcatagt gatgactttt aattgtccca ataaacaagc
      481 ttttaaaaag cttctaaaat gttctctaat aacacacttt ggtctttagc catagaaatg
      541 ctgaaataat tagaagtgcc attgtgtaca gtgccttctg gactgggctg aaggtgaagg
      601 agaaagtatc atgctatcct tgtcagctgc aagggtaatt actgctggct gaaattactc
      661 aacatttgtt tataagctcc ccagagcatg ctgtaaatag attgtctgtt atagtccaat
      721 cacattaaaa cgctgctcct tgcaaactgc tacctcctgt tttctgtaag ctagacagag
      781 caagcctgct gctcacttat tgagcaccaa gcactgaaga gctatgttta atgtgattgt
      841 tttcattagc tcttctctgt ctgatattac atttatagtt tgctgggctt gaagactagc
      901 gtgttgcatc gctcttctgt gctgtagtgg aagtgaatca ctatttctgg aggctgtatg
      961 caacagttga tgggaatttt ggaatagcaa aagcatggga atatctacgg acgctcattc
     1021 tcctcctgag caacagtggc tttctatttg cctcttaagc gctcctgcac tgggtccagc
     1081 agcagtgccg ctgcctaaat tgtcccttga aggatgagaa gtattttcat aaaaggttag
     1141 aaataatgta tttttcttag cactgaattt cacagtacag cattgttctg tccattatga
     1201 cccgagttgt atgaaatagt gatgcagccc cggactgtct gtttgatttg ctctcagcgt
     1261 gatttaccac atcatatcac aacagcccag gtatttccaa taaatacggg gccaaattca
     1321 ttgctgaca
//
LOCUS       KCLA01000946             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15265upu ultra-conserved element locus uce-5901,
            sequence.
ACCESSION   KCLA01000946
VERSION     KCLA01000946.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15265upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-5901"
BASE COUNT          257 a          157 c          122 g          241 t
ORIGIN      
        1 tgctgtacca aaatctgtgg tgctctgtaa ctgcagaaat tgtgatacaa gattgtgttc
       61 acttttatct caccctaagc aatactattt tatacaactg caaaggagcc acattatcat
      121 ctactatgca ctatcatatc gcaaactgtt taagagaact ggcgccgcta caatcgaagt
      181 gatccttttc tgtagcttgt tctttgcaaa tcacccaaat gctagcagtt gaagagagcc
      241 tttgatttct tttcatcttg gcaccgtaaa ccctctcttg ttcgatacac acatatccct
      301 caacttctgt caaaagcaag aacaaatctc ctaaccaaaa ctgaaaagtc cttggctttt
      361 caaatgacta taaattgcat ggctaagtgc atatggccac agggctgtca cagttacttt
      421 tcctgacaat tcatcatagc atactaattc tgtaatatca ttactgtgtc tcttctcact
      481 gtaaagatcc agccagttaa tttaatcaac taataataga ttcagaaatg gatgcaaagg
      541 gccctagcac ttcagattac attactagag atgcacagca gtgaaagcaa cgtgttctgt
      601 acctgccatt aaatataata ttctgctagt aaactggagg tttttcttta gaaggaaaaa
      661 agaaatattt gtagaagcct agaaaaagtc tttgtcaaca aggttaaaaa acgtttattt
      721 cacatgaagc ataatttata attaaattgc attaattaga agcaactatt taatcaa
//
LOCUS       KCLA01000947             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15280upu ultra-conserved element locus uce-6087,
            sequence.
ACCESSION   KCLA01000947
VERSION     KCLA01000947.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-6087"
BASE COUNT          209 a          108 c          166 g          325 t
ORIGIN      
        1 tgttctgttc tgtatgtggt tttctatagt tttttgtttt ttcagcttca gatacagaca
       61 ggagtcttgt ctaataggga tataattttt aatggtttgc attattttca aagttcaaat
      121 tatcactttg agattactat aaatacactt aaaattatct attttaaatt aagaaaatat
      181 tagagatatt ttcatgggtt cgatgacctt tcgttttata agcaatgggc atggtacaga
      241 gtggctgtca cgtaaggtac ttgaagattc ttagtttaat tctatttttg caataacctt
      301 gactcttctt tttttgtttt tgagttgtgc atgtaatgag tccagtaaat gctgaaaagg
      361 gggaagagta aagtatttat ctaaaataaa agctatcggg gaggggaatc aatgaatgta
      421 tccatctgta catgatttac atgctgtgga tgccttttcc tatttgttta aactgtgttt
      481 tggcaaggat gtaattgccc tcgtgtgtag ttctaagcta atgacagtca tcaactggtt
      541 ttgtgtgaaa tggaattcat agtatttttc tgtaacttta tccccatggt gagtctgtac
      601 cacacactgt ttcatactgg ggccaaaggc cagtccccaa tcattttgat tcactgtgtt
      661 ttttttgttg tctagagagg attattgcca cagtatattt tatttattca ttagatttta
      721 gccttgtaag ttaaagtgtt ctaaatgatg atgttaacag gtatttgtcc ctttactggt
      781 ttttttgggg tttttttggg gggtgggg
//
LOCUS       KCLA01000948            1157 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15296upu ultra-conserved element locus uce-2518,
            sequence.
ACCESSION   KCLA01000948
VERSION     KCLA01000948.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15296upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1157
                     /note="ultra-conserved element locus uce-2518"
BASE COUNT          237 a          321 c          338 g          261 t
ORIGIN      
        1 tgtatctagg aagccttttc ttctgttgtt gtttgttccc atctcattcc cactctcctt
       61 tatataaacc aaaaataatc tattctgaat acatggcaga acgaggatct gcctttatcc
      121 atccttagtg catgagggga tggaatcagg gagtggagat aaaaagaggt gtgtatagcc
      181 ccagtgcata agagtgtggg cttctaccgc tcctgcaggg aaggatgctg tgggggaagg
      241 gggagcatta tctccccagc acggagctgc aggcatgacc tggaaaaagg ataggtgctt
      301 tctctctctc ctcctgcccc cacccgcctc ctcttccttc aaagcaagag taggtaagca
      361 gcacagaagg gtcaaggata gactttctct ccatttgtcc ctccagtgcc agggtgtgtg
      421 ggtagcatgg ctctgtgcgt gcccctctct ctttctctcc tctgttgcag cagtcagtca
      481 ataagtccct ccagaggaga aggaggtctt acagtgcccc cctcctctca cctgaccttc
      541 tcactctcag tcatttccca aagtcccagg ttgagcacct tgaggcaggg cagctgggtg
      601 atgcgctcca aaccacgctt ggtaatgcgg gtgcagccat agaggtcgat gcccgtgagc
      661 tggctgaggt gttcggcaat gagctccagg cccttgtcag tgatgcggac gcattggcca
      721 atgttgaggg tgcggagccc gtgcatctgt cgcaccatgc ggttgatgcc ctcatcgcta
      781 atgtggcagg agcagaggga gagggaacgc agcccgtcca aaccctgtgc gatgtaggct
      841 aggctctggt ccccgacctt gtcgcagaag gagacatcaa ggccagagag ccgcaggctg
      901 cccatggcca ggtgcatgat gcccgtgtca ctgatgttgt cacaggagcg caggttgagg
      961 ctgcgcaggc tactcatgtg cgacaggtgc agtagccccg catctgagat gcccccacag
     1021 aagctgaggt tgagctggcg gaggcgaccc agcccacggg ccaggtgctt gagcgagagg
     1081 tcgctgagct tctggcagtc ctgcagtgta agctgctcca ggcccaggca gccctcggcc
     1141 gcactgcgtg tcatgcc
//
LOCUS       KCLA01000949             865 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15311upu ultra-conserved element locus uce-6827,
            sequence.
ACCESSION   KCLA01000949
VERSION     KCLA01000949.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15311upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>865
                     /note="ultra-conserved element locus uce-6827"
BASE COUNT          282 a          171 c          151 g          261 t
ORIGIN      
        1 aaaattaaaa agcacagggc aacattacat cttccatcta tttttagtgc aacttataca
       61 ggaaatgcaa ttgaggaaaa gggctgctca tgctatggtt tacaatttaa agtaaaaata
      121 tggcctacgt atgctgagtt ttttctgtca atcttacatc tctccaatga gactgtgaga
      181 aatgtacaaa gttatgtgat catttctgac agttcttggc agctgggcag gcaaccattg
      241 gaaaggatat ctctctcccg atccaagatt aaatttggac tgaaacacag ggctcattta
      301 ggcagcaatt aaaggacctt acagactgag ggagaatgaa atgataaatg caaagaggct
      361 tatttaatgg ggatattaag taaactgctg gtaaaaatgc ccatttatca tccactgatt
      421 cctaattggt ttcctgttcc tgcctgcatg tggcattttc agaagaaatt accttccttt
      481 agtgcgactg ttgcaaatgc aataaatcaa ccccatagat ttctagctaa tttagatgga
      541 gtctaaattg gagccaaagc atgcaagagt gcttgcaatt aatgttcatt acaactttta
      601 gcttcaaaaa caggaaggat catttcaatg caccattccc aagcaaggac actatttcag
      661 gtcttggcca tcctttatat gcttaacaaa aatcacttgc ctttgtaagc aattgaccct
      721 cgcataaact acctaggaat cctaactgaa gtctagcaac ccttcaaata cttgtacatc
      781 aagataattc cttgtcttta atttttatta catgccccat ctgcctataa aggcaaatgt
      841 agactaaata tgttaattca ccata
//
LOCUS       KCLA01000950             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15326upu ultra-conserved element locus uce-3,
            sequence.
ACCESSION   KCLA01000950
VERSION     KCLA01000950.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15326upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-3"
BASE COUNT          271 a          162 c          193 g          236 t
ORIGIN      
        1 ggacccggtc ctgctaacaa atcctctgtt ccctgcacac agctgctact taaaaaataa
       61 aaggagctct gcattatcat ttttaagcta gtaaccatag aacagcacag aatagatgac
      121 acacttactg taatgtccca tgaagcaaag ttcccatcta gagagagagg cactcttatt
      181 ccactccctg caaaagggtt aaccattatg aagaaacatt atgccagaca tcagcagact
      241 gcctacttag atattacatt tttccataca tgataaatcc tgggtaaacc tgtttttctt
      301 tttaaacacc ttgcagagtg aagcctagca ctgcatctag ttgccaaagc acaatcaata
      361 tggaaggagc ggtattttat gattggagaa gttgttgtgt ttttggtggt gaaattcatt
      421 atttagtatc tgaaccctca gcatttcagt atcatttatt cataaagtcc ctttttgcca
      481 ggaggaaatg gatacagctg tagagagaga gagtgcgaga gagggagagg gagagggaat
      541 gagacggatt gatgatattg atcaggtacc atcttgaaac aaaggctagg tgctctattt
      601 tagttgacaa ctgtgacaca taaaaaacaa gcaagagagg gggaaggcta gggccttgaa
      661 catcacaggc tttaaaaagc gtttgaagaa accattatga caagcaggtc taggcaagct
      721 gctgcaaaaa tgtattcaga agagtcatta aaaaatgatg ctttgtttgc cttgtgaata
      781 tgaggtttgt agctagctgc agagcactct cctacagagg aaatgatgag gtttttcgtg
      841 ctgcagagtc gcctctctct tc
//
LOCUS       KCLA01000951             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15356upu ultra-conserved element locus uce-4518,
            sequence.
ACCESSION   KCLA01000951
VERSION     KCLA01000951.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15356upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-4518"
BASE COUNT          193 a          134 c           89 g          181 t
ORIGIN      
        1 ttttcgagaa ggtgcagttg taatattcct acaatgtctc ttggttttga aatgtggcat
       61 attattcatc ccgggtcctt tgatgtgtgt ttttccctca atccatgctc caacaattct
      121 gtcatacaga gaactgaaaa ttaagttatt ctcaccagca atactccccc acaaagaatc
      181 tatcaaacca tagatataaa cctcagaaca atccctgcca ggtttctcat gcaaatgccg
      241 tagaaaaact tacaagagca ctttaagata ttgagaaccc ttcaatacaa cccagtataa
      301 taacttttac ttgctaattt ctatgggtca gttgcaaagg aatagacctg tcaatctttt
      361 tcagatgtag cagaatttgt ctgtctacaa acagggatgc tttgttgttg ccatagagac
      421 taatcctcca ctttccttct gttgacacag ctagtcacac tctaaactac ctgatcacac
      481 ttttaatagg cagctgactc caccaccata aaatgctcaa atcaagttcg caacacttga
      541 cgcatctact gttgctttta aaaaataata ataataacaa caggaaaatg gtaataa
//
LOCUS       KCLA01000952            1181 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15371upu ultra-conserved element locus uce-4201,
            sequence.
ACCESSION   KCLA01000952
VERSION     KCLA01000952.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1181)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1181)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1181
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15371upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1181
                     /note="ultra-conserved element locus uce-4201"
BASE COUNT          330 a          259 c          237 g          355 t
ORIGIN      
        1 gtctgagagg tcagtgcagg catggccaag caccaatgtt ttcagtacaa acaaagcagc
       61 acagaagtaa taggagaaga aaagtctggc tctctcccca cctccaaaag tgggaatagc
      121 aagacccatt ttcttgcttt tttacatgaa acacagaaaa aacacaagcg aggcattttc
      181 tgatagaaac aggcgcatac atgcaaagca tcaagctgga atactttaaa atcttaacct
      241 taaggaccaa accccaccaa agagaagtag acagctttcc agcctaagag cttcatggtc
      301 tctaacttac agttgttcat ccagaatagc tgcaggttca aactgccggg actgacttgt
      361 tgcattaagg tagtcttaat gctttctctt cctacactgc cagactgaac gtcaccgtag
      421 aactggtttg taaggcatga cagttctcag agactgaacc tgccgtgtga ccaagatgac
      481 attttcatcc tcaaagaagc cacctgtacc tttctgacaa agctgtgtga agtattagaa
      541 tctgatgctg tagaaagatc ctagttgcct ttgtgtatat ttactgcctg cttgagtgtt
      601 tctctgtgtg ggttttctct gtatcttgta gaaatgtttg gggtgtttta tcctgccata
      661 tcgctcgtgg cccgcgagct gacaacttta gccgtatttt accttcattt ttgatgaggt
      721 ggtttctatt ttgtttcact ttgtgtagtg acttcccacg gtagagtttt ccaattgtcg
      781 ttaaaataac atacatatta cacagatatt caataaaaat gttttatttc ctgttgatgt
      841 tctagcattt ctcttttgat ctggaaaaga tggaaagata ttcactctgg gagcacaatg
      901 acagactttg aagtaccaca agtgtaatag cacagcactt ttcaaggggc tgtggaaagc
      961 tgctttcatc atcatggtcc actctacgat ggtcccagcc agcagtgctc cagtagatga
     1021 attctccacc tctgttgcag gtgaaggatg attaccttgg tttcccaaga gcctgattac
     1081 ttgtctccaa aaacaccatt ctctcgaaac atggactagt ttatagactt ttcaagtagt
     1141 ttcaagttgt tacccaacat ccataccctt caagccaatt g
//
LOCUS       KCLA01000953            1124 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15387upu ultra-conserved element locus uce-1043,
            sequence.
ACCESSION   KCLA01000953
VERSION     KCLA01000953.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1124)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1124)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1124
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15387upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1124
                     /note="ultra-conserved element locus uce-1043"
BASE COUNT          332 a          254 c          193 g          345 t
ORIGIN      
        1 tacagagggt taacacgaaa aaagggaaca atggtaaaat atgaaacttg ttctttggct
       61 tcatctttca cattcctgta tcatactaca gcagaaacta atgaacttgc ccatcttcga
      121 aagccctttt gcaggcttct tccttcaccc ttaactctga tccttgcagc tcttccctca
      181 cgtgtgtgcc aatttcactg gtacaatacg tgcactttta ttagttgtgt tctgatgatt
      241 tctactgaga gatacttaaa gcttatccca gtcaaaaact attttatcac ttctgaacaa
      301 aactaatagg gcagagtcac tgaatgataa gagagagaga ccactgaatt tatttaataa
      361 tccatgtcca tttcacaaaa atggcctgtg taatcctttt aaaaataata acctgttcat
      421 ttcagacctt gcacaatgct tctctttgtc ccttgtaagt ctctcaaatg tcttatttta
      481 aaggaatata tagtactccc ggaagacatt ttcccatttc tattctcttc aactcctgtg
      541 agcccttgtt ctgtgtgata aggcaatctc cttcgggatc tgagctgtgt agtttcgcac
      601 cacgagtgac aaggactcga cttgaataac tgctgtgcgc aggttgtaat tatgtcagct
      661 ggagtgttga acaaggggac tgattaatgt gagccccagc ccaggcacag tccctatcaa
      721 aaccttcgtg caggccagca gtggggatgg gttaaagcag aaagacaaaa catgctgtat
      781 cgtccatgat agatgaattg ctccaacagt cttcaggcag atgttccagg acagtataat
      841 atacaattac tctgccttat caccttccca gggacaataa agcttcctcc ttctatagct
      901 catgtgagtg aaggcaaaat tagttttact tttacaacac tgactcactt atcatgttgc
      961 cttgattgtg cttttacagc taaagaaaac atatattcca ctcttaaact aaaaaaaaaa
     1021 aaaaccccct gcactcctca ccttttatat aaaactcaac aagcctttga atctattttg
     1081 catcacagcc atactgcctt aaagggctaa ttcagtgcgt tatt
//
LOCUS       KCLA01000954             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15403upu ultra-conserved element locus uce-2704,
            sequence.
ACCESSION   KCLA01000954
VERSION     KCLA01000954.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-2704"
BASE COUNT          273 a          194 c          195 g          264 t
ORIGIN      
        1 tatctaatat tattttaaat tgtttgtact taatgaacca aacaaccact ggcctgcttc
       61 tgcctcagcc tattttcctc ataaggcacc ttagctgctg tttggacaac atccatgtga
      121 taatgaagca agatgcagcc tagccagctg cttttttctc actcatttca ctctgttatt
      181 ggttaactta gtggaaaaat gtaaattttc cagggacttt aggttggagg tatcccagcc
      241 aaggtagata tgtgcttgac ttgaggtcta atttaactcc tgtgtagtat cgatcggctt
      301 ggcccaccag ggacccttag agtcttcctt tgccaaaggt agacaacagt ctgaaagtaa
      361 agtgtaataa atgcccctgc gtggtcccgt ggcgatagac ggctgctttt attttttctc
      421 cttttttgct gttttgagtg catcagtatt tcacgtttat tgtagtgtga tgaaacacct
      481 ttccaaatgg ccagagggac actcagcagt aagcagttag gcagtacaaa ttggagcgaa
      541 caggaggaca gttaacaggg aatatttctg aggtcaaagc aagctgaata ggagctgaat
      601 cagctaaaag cgagttgaga gctaccgtac ctcctgcaaa gtaaatatag attacattcc
      661 tttagacaaa ttgatccact ggaggacgat aggtcttcca gaaaaagagg ttgctacaga
      721 agaattaagt attttacact gacatacata caaagaaccc ttaaacacgg aagccaccga
      781 catcaagtct tggtcctcat gtgaataatt tgcactgtgt tgcaagatta aaggtccaca
      841 agcctgcaca tttctgcaga tgctgacgac caatctgcac agtaagcaaa gcaatacaat
      901 ttagctgctc aactgagcaa cagttc
//
LOCUS       KCLA01000955             883 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15418upu ultra-conserved element locus uce-7048,
            sequence.
ACCESSION   KCLA01000955
VERSION     KCLA01000955.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15418upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>883
                     /note="ultra-conserved element locus uce-7048"
BASE COUNT          187 a          253 c          225 g          218 t
ORIGIN      
        1 ccctgcgccc tttggaacgg ctctgaggag tcgactctca caaccaagac tctcagcacc
       61 aagtcttgca ctggggggct cggtgtgaag gttggcttgg ggggcaagcg gggggcataa
      121 agggtttcaa acgctccccc tgctcggcga ggtatctcct gagcctctcc ttgtgttcca
      181 agataatcga atgactcagg gaacagggct ggcattaaaa cctcggggga gggcgaagca
      241 gaggtacgag ctctaaatcc cctgccaaat ccccttttca taatttatag tctgtcacca
      301 gtttatcacc caagactgtc cctctctctc tcgttccgca ggctcctttc ccagtggaca
      361 ctccatgcca gctgtctcgg cagaaggaac ctcctttttt tcccaagccc cgacctgtgg
      421 gaaaatcttc attggccagt aattgattcc accctgccag ctccattact ttagtctaca
      481 gtcaaactgc cagcaagctg gagacaggca gcctcggccc tcccctgctc ccaccattga
      541 agtccagtgg tgcccgcgct gggagccgcc gcgctgcggg ctggtgtgtc agtctgcccc
      601 gcaattagca ctaatctgaa aattggcctc tgctggcaaa gccgagcacc tgacagctaa
      661 ttgttgatgt cagactgatg tgcatttaat acggaaaggt tagctagcaa agggtgcttt
      721 tttcctctgt ggggctccgt ttgtcccgct gttgccgcag gcacttaggg tccacactcc
      781 agtaaagata ggatccttca tttcgcttga ggagccttct aaaaggcctt ttcagggcag
      841 ggaagtagcc atctctttat gtcctttaga aaggagctca tga
//
LOCUS       KCLA01000956             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15433upu ultra-conserved element locus uce-5093,
            sequence.
ACCESSION   KCLA01000956
VERSION     KCLA01000956.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15433upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-5093"
BASE COUNT          237 a          104 c          120 g          247 t
ORIGIN      
        1 attttttttt attatttttt ttaactgagt agaaaatatg tagaagaaaa tgcaactata
       61 tatacttctg acagctcaaa tgatacataa atataagggc tgacaagggt tggtttgtca
      121 ttgtagttca cttcgatcaa ctctacatgg ttctgtagga caatgaaatt caatgcactt
      181 ataatttcca aaaaagtgag ctcagattct tttaaaagca tttctatgtg aaaacggatc
      241 atttacatgc caaaagcact tttaatgtga catatttagc acatgtatta ttgagaacga
      301 aagctgcttg aacttagtga attttaaagt ctataaaatg gcaccctgct gagcagaaag
      361 gtagctgttc agtgaatttc ccagttatgt gattattttg aataatagac ttgtacataa
      421 ctttttacaa aattaaaggt atgacatttg ctttagttca gtcctgtaaa ttgcacttta
      481 gaacataaag aatgggctga tgtatgaatt tgtttttcct ccaagcaatt ttgttgattt
      541 tttaaagaac agttttatgt ttcatctatt gagtaacaca tcaaacagtt atcttagtag
      601 atttaatgag cattcatgta taacttaaca catatgagaa acagccagga acgtcaaaaa
      661 taaatgcatt gtgtattgcc ttggttgtct gggactcacc cagaccat
//
LOCUS       KCLA01000957            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15449upu ultra-conserved element locus uce-7946,
            sequence.
ACCESSION   KCLA01000957
VERSION     KCLA01000957.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-7946"
BASE COUNT          299 a          250 c          206 g          266 t
ORIGIN      
        1 taatgaaagt gcatctaggc tagtaaaaca gaccaaaaca aatcctcaca tccaagtcct
       61 gttgtgtaat gaggaagttt aattaaggcc acacattaca gctgtaaacg ttctcttata
      121 taataaggtc taaatgaaac tgaacctaat caaagttaca attccttcat tagcaaatta
      181 caaacaagag cgcgcagctg acacaccggc tatgattatc acaactaatt gcctcgttgt
      241 tacgaacctg cctgaaactg tgttcagatg tccgtctgca gccgcaaatt agggccacat
      301 caggctattt ctgcgatcac aaggggctct tgtcgagcga tctgatttac ccagccgact
      361 ggcagcacac agcccaatca aagccccctc gacaaaggcg gctttgaagc cagcacagcc
      421 tagaaacccg ctccatatgc aggccggcag actgcacttc attaggcttg ttgtcacatt
      481 ttccctcttc ttattctaat gatcctattt taatacacac aggaacctct cctaattgat
      541 gtcaagtgag tgacttccac atgcatcacc agagcacatc aaacacatct tggtgcatgg
      601 gccgctgcca cagtgcttaa gacccgaggt gtgtctccaa ctatcgaaag ccaaaaaaga
      661 aaggagcatt tcggcattac ctgtttaatt gggattgcgc gtccgctgcc aatgctgtca
      721 gttctgctct ccaggacctt cttctctttg tctgggtcac tcccttttcg agactgcaga
      781 gtgaacagaa agtttgggct ccattaaatg ctgcacttcg tgcagaaaat ttcaaagcaa
      841 ttaaccaaaa gcatatacaa actcaaaggg tgcagtttaa aatatgcaaa ggtattcgac
      901 ggttcccaaa tgcaaacagt aaaatattcc cttgaatttt caaccatcca ctagtctgaa
      961 atggagtttg gggtgacaga gttgtggttt tgctgcctgg agttccagat gagaggacat
     1021 t
//
LOCUS       KCLA01000958             278 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15463upu ultra-conserved element locus uce-80,
            sequence.
ACCESSION   KCLA01000958
VERSION     KCLA01000958.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>278
                     /note="ultra-conserved element locus uce-80"
BASE COUNT           83 a           44 c           55 g           96 t
ORIGIN      
        1 gggtgtggaa aagttacact ggaaaccatt ctaacatctt gaacagagaa agtcagttgt
       61 tcctggatgg aaatgtttct cactctagct gaagctcatt tgacaaacct attataaaat
      121 gaataaatgt agctctctgt gatttgtcca ttgtcaacat gttaacacac tttatttgaa
      181 ggtagattga tgaagggtgg ctgaaggagt ttaccctcct gagtgaaaga atagaaaatc
      241 cttttttctt agcatttttc tttttttctt agaagttc
//
LOCUS       KCLA01000959             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15478upu ultra-conserved element locus uce-5224,
            sequence.
ACCESSION   KCLA01000959
VERSION     KCLA01000959.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-5224"
BASE COUNT          264 a          178 c          146 g          248 t
ORIGIN      
        1 ggaaaagaac cttacctcca tgttctgtga tctaaggcaa atgggaatct cagtgagaca
       61 gggaggaagg agctttggtt tttatttgat ttgatttttc atttggttca atgtaacttt
      121 aagaaacatt aatctgctcc ttcatttaat ttcatctgta ccactggcca agagaaatgc
      181 actaatttat aagttgaagc aagccttgag ataatgtcac ccaccattca tccaaatttg
      241 tcactagcat cccattaaag ccgtaattat tttttaatta aaactaagga agctggcatg
      301 cgtgtgccta ctttatacat ctgttatggg ttaaaatagc ttttaaaaaa tgttttttta
      361 gaccacagtc ttttgtggcc atggcctatg ccaaagaaaa cgcaaacttg cttattttct
      421 ccatggggcg caacactgcc tatgtgtgcc tgaacagatt cgactggccg tgaaaagaat
      481 tctaaataaa acacaaacat ggaatttggc aacaccacag aagcgagctt aagactaatt
      541 ccagcatgtg gacggctctc acacagcaag tctggctcca ctataaatga aaccaggctc
      601 tgtaaaatcg ccagtaaagt ttgagttagg atttaaagag acagcacact tattccaaag
      661 tttaagggcg tgcacacaca cacacacaca cacagagaca tcccagctcc ttaaaaaaac
      721 tcttgctgcc tcagcaccac tgaacactgc aatgtgtttg cattgttttc tgtcatatcc
      781 acctcaaaca aaaactttta aacttctttt aaggttaatt tttcaatttc actgtt
//
LOCUS       KCLA01000960             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15493upu ultra-conserved element locus uce-6152,
            sequence.
ACCESSION   KCLA01000960
VERSION     KCLA01000960.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-6152"
BASE COUNT          196 a          110 c           95 g          182 t
ORIGIN      
        1 aatgggttaa atgcttatta taccactgtc ttatttgtaa cataaggcac ctactacaag
       61 cctactcttc atgcaaaatt gccaatttat agcaatattc cttgtttaga aaacaaggct
      121 atccaaacac tataattaca atatgcacca gcaggcataa ccctgcatta atgcacagac
      181 tccagataca ttcgtcaaat agagtttttt tcctctttgc cttcttctca gggtactttt
      241 aagttcaggg acagagaaca tgtcttcatt agaaacatta acattcacag gctgtagtaa
      301 attttgacag tgaaaaggtc tctgtaacct ttagttgtgc agaaatttac ttcccaagaa
      361 aattacagct ggcactgtct taattaatgc tagctttctt ttctgaaaat tgtgggcttg
      421 tcagtaaaaa aggcagaaaa acctgagttt aaaagactgg acacaaaaga cgcctagaaa
      481 taaagccctg cgaaatttca taatattgct ctgtttttgt tctacagtaa ggagatgaaa
      541 agatctaatt tcattttgcc aaatggagca acatatatgt aat
//
LOCUS       KCLA01000961             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15508upu ultra-conserved element locus uce-5100,
            sequence.
ACCESSION   KCLA01000961
VERSION     KCLA01000961.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-5100"
BASE COUNT          281 a          207 c          205 g          270 t
ORIGIN      
        1 tcagacctcc cttgaatctt catctctcta gctgccacct ctcctcagtc cccatgctga
       61 ccccctgaat caagccagat gggactggtg gagacatgtc aaggaagtgc tgaaaaggtg
      121 acttgggtct ctggcagcta gtctggagct cgtttctatg caaaatctct ggggcctgct
      181 gctttgcaat ttctcaggaa tgtttaattc tcctcatccc tttgctgagt ctctctggag
      241 aggtcataga ggcctgtgac atccctggag ggcactgcct aactaaatta gcatgagata
      301 aatttggact ttcttccaaa caagaaaata caagggagag aatttcatta aaagcagaag
      361 actaggtgat ccaagttaat cccagcccag agctgatgca gaaatgttct ctgtttatat
      421 tttgacttta ctctctgtta cagagttcac tgactataat agaagctgtg ttaagtgcac
      481 aacttgacct catttgacca aatcttagtt tcataataaa gacaaaacgt ggatttgggg
      541 gctctaaaag ctttcattag ttgctgcttt gcttttttgt gtgtgactac accaggcact
      601 gggaaaatgc taaaagactg aggtatctga ctctttaaat gagcttttta atcaggaaat
      661 gcaagctctt tgcaaaatga ttatcagcct gcgtctatgg gtttagtatt tgtcaacaaa
      721 tatgaccaag ccccagactt aaacacaaag ttttgttcag cttctgtcag tggatgaagg
      781 aaaaaaatct gcttcagaag ataaaaagac aacatagaga gagaaaatgc tgacatctgc
      841 acacatttgt gcaatagtgt gtttcctgtg agctcaaggg cggtgtaaga cacgaaggga
      901 gctcaatgca cccagcaata tcccacctca tcttccagca gtgaatgaat cagagcaaac
      961 acc
//
LOCUS       KCLA01000962             326 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15523upu ultra-conserved element locus uce-4172,
            sequence.
ACCESSION   KCLA01000962
VERSION     KCLA01000962.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15523upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>326
                     /note="ultra-conserved element locus uce-4172"
BASE COUNT           94 a           46 c           92 g           94 t
ORIGIN      
        1 actttaactg tgcttttgtg ttttgtcaga attaatgaga aaagttccct tgccctaggg
       61 gtaattagtg tccttggagt taaataagct aatacttaga cacctctggc acaggcaatt
      121 atgtttgtgt attgaataat tgattcaaag agggggggaa ggggctgcta atcagatctg
      181 agcataatga attgatttaa ttaacagggg aatctgaggg tccctgggaa atgtgtgcat
      241 ttattcagca gcaggagaga gtgcaaagca cataaattga gagagcgaga gaggcaggcg
      301 gcgagtgctt ttgctttcgg tgatag
//
LOCUS       KCLA01000963             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15554upu ultra-conserved element locus uce-7500,
            sequence.
ACCESSION   KCLA01000963
VERSION     KCLA01000963.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15554upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-7500"
BASE COUNT          299 a          177 c          123 g          312 t
ORIGIN      
        1 tactctgaac accctttact ttacacaagg gtcttcatag caggtgtatc attgcatcgg
       61 ggcagcaacc acttgtcatt ttaacatata accatagtgt attaataaaa ttatttaaaa
      121 tctaccagtt aaatcatttt accaaaacag ggatattcag ctatccagtg ccatttttac
      181 aatcaaaaca tatacggtcc taattgcata atgccatttt tcctactgaa gataaaagtg
      241 ccgataaaca aaaatgcaca ttaggcagga gatttttcag aatagatttt tttttaaaat
      301 aacccacttg cattaacaaa agactgcaat ggcttccaaa ttatagggtg ttatttttag
      361 tggaagtagt tcaatattca tattggagca gatgtagcag tttaacaaaa cagcccttca
      421 aatcctgcac aaattgaaaa caggaaaact gattgcattt tctcttatca ctttcctttt
      481 ctgaattgac acttttggcc ttctgaaaat ttacacatgg ctttcatctc tacagcacct
      541 gctgatcaaa cagaaaccta acattttcat gaaaacagta caaagaacta gttttctttc
      601 taccatatta aagggcatca gcagtccact tgatggcaca ttcagaatat atttctaatt
      661 ttcattacac ttacttttaa aaattagtta aatcactagt ggctctttca tattagctct
      721 ttgtctactt taaattaatt tcagtctcta tctctgccta accctgatgg gtttcattct
      781 atagtcagct agattttaag tatctggaag ccttctaaat actaaagcat gcatgttctg
      841 cagccactgt tcttctttat atatgcaatt atatatatta atataaacaa ttgtgcaata
      901 cacatgttgc a
//
LOCUS       KCLA01000964             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15569upu ultra-conserved element locus uce-7021,
            sequence.
ACCESSION   KCLA01000964
VERSION     KCLA01000964.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15569upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-7021"
BASE COUNT          159 a          110 c          108 g          164 t
ORIGIN      
        1 agaggaaaat attacctgaa aaccagattt gagcagtatg gaaggagtta gactcctttt
       61 caaatatgtt ttttcaacta atactcttgt gtagcttaaa attatcctga cagaaaaaca
      121 attggggcag cttttaaact aatgatacaa tcccatggat aatttcccct aaatagctca
      181 gagatgtgat tgagtgaatc atatatcatt gcaggaagca attctcctca atgagttcta
      241 cctgctagat atcacgatgc attacagatt gagtaaaagg ctccatctga aatcagattg
      301 aaactggctt tgagaaaaat ttagaccctg agggtgagtg agcagcaaat gcatttaacg
      361 cttccctgtg gttcgcaggt tccacgtatc cttgtccaaa ccaggtaacc cacgatggga
      421 ggtattccca tgacctacat gacttttagg ctgtctgcac gggtgtaatt gaccttaata
      481 tgggctttac tgctccttga tactttaccc gtcctctctg aggtgtctta acattgttct
      541 c
//
LOCUS       KCLA01000965            1136 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15585upu ultra-conserved element locus uce-717,
            sequence.
ACCESSION   KCLA01000965
VERSION     KCLA01000965.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15585upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1136
                     /note="ultra-conserved element locus uce-717"
BASE COUNT          311 a          263 c          250 g          312 t
ORIGIN      
        1 ttgattcaca gggttcactg ggacacagtc acaaagagga cacaataggt tggtgcgaga
       61 tgccagcctt taaattccca gggctttgtc cttaaccagt agggattttt ttttagcact
      121 cctgacacct caatatatag caaaggacac cctgaaatgc tcatggctat cgaaacgaac
      181 gagcatcagc acaccaagaa atgatgcaca gagccggggc gctcggaacc tgaactcacc
      241 cagtggcgct gggtttcacg cagcccagaa tccggtggcg gtaggaaatc aggccatgcg
      301 gtgttttaca cgggcacgtt tgaatgacac acataccagg gagcttccat tgttcacctc
      361 gcccgtgcga gtacataatt ttcctgctgt cttttccccc catttgttct tttcagctat
      421 tttgtgatta acgctgcctg gagaaggatt tcagcctttt ctctggttta gcaggatgtg
      481 agtgaggtgc tgctgccgca tgaatctttt aaaagcagcc taagaaatat ttaagacctt
      541 agtctaggag gaacagctct cccaggcata atttttggtg ctggttgcag cagggagcgt
      601 atgctgtgag gaaagtatta tttttctaaa tggaaggtgt cagatggtca cgcaatgtga
      661 ctgcatgttc gagatcactg cctcccatct gcaatttgtg acgtgtgaaa gattctgccc
      721 aaatgtgctc accaactgga aaccctcggc actttttttt tcttatcagg agagaccaag
      781 ataaccaatg gttttacaga tcagggatcc tatcaaatta atatcattct aggataaaat
      841 ctgctttaaa tacaaccacg aaactccagc aaagttaact agtacataca agttcattcg
      901 gctgataaaa aatccctact agtcaaacaa gaaaataggc atgggaggag aagtattctg
      961 cccctgtctt ttaaccgaag cctcggtata aaacatgaca gtcttccagc gctaattaat
     1021 gcaccctaat tataacactc actaggctca tgccaggcgt taatatactg gggatagttt
     1081 ctccttgtcc agcttcctgc tggatcaaac tagatgattg ctgtttgcat ccctct
//
LOCUS       KCLA01000966             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15600upu ultra-conserved element locus uce-1359,
            sequence.
ACCESSION   KCLA01000966
VERSION     KCLA01000966.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15600upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-1359"
BASE COUNT          251 a          198 c          176 g          291 t
ORIGIN      
        1 gttccaaagc ctgactattc cttcagtata gaaacttttc ctaatgtcca gcctaaccct
       61 ggtgcagctt gagacccttt cctcttgttc tgtcactaat gacctatgag aagagaccag
      121 cgcccacctc tgtacaatgt cccctcaggt agttgtagaa ggtaggtaac tcacggatag
      181 gccatgcctc agatgatgtt gagcaacctg gtttctgcct aatgtacttg cagtggggat
      241 ggtattgaac attattcaga atccattata tatttatctt catactcctt tgtggaaaat
      301 gatttctgta agtaccctgt tatggttatg aaagcctgaa ccaggcatca gtctcaaacc
      361 ctttgacctg tctgcacagg atggagatct gttttgaaaa ggactccttt atatctgttt
      421 ttactccatg cccttccatt catttgccta tacaaagcaa taaagggtaa aactaaagta
      481 acataaattg gtctgtcttc ctgaatccat gtctcgctaa tgtacccaga ttaactcaac
      541 tgtaaattgt ctcctttgga tgtcgtgtct tgctaaaagt ttcctatatg attcatgatt
      601 tggattgctt ttaacagcta ttggctaagc aatatggtaa atgtacaagg tgatgcaatt
      661 ggcattagtg agaggatgca caggagcatg taatgcagtc aatactacat taactactga
      721 tgcccaatta cagaaactgg aagagtggct tttaggagca ttaggacttg cagaagagct
      781 gagatcacct gccgctcctt gcctaaaagc ttcacccttt atgcgctggg atcaaagcaa
      841 acatttagtt gctattttgt catgtataac aacgaaggta tttttccctt ctcttttttt
      901 tttcccccac caaaaa
//
LOCUS       KCLA01000967            1108 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15615upu ultra-conserved element locus uce-6432,
            sequence.
ACCESSION   KCLA01000967
VERSION     KCLA01000967.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15615upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1108
                     /note="ultra-conserved element locus uce-6432"
BASE COUNT          371 a          245 c          188 g          304 t
ORIGIN      
        1 aattttaaac attttgataa tcaacctttt aacattctct tcctctaatt acaggacccc
       61 aactaacacc acatcactta ttacttggca tggagaaaag gaagtcacga taaactgagc
      121 acatgaaggt ttgcaaacat agataattaa gattcttcct gcatgaattc actcacctta
      181 tgctgctagc ctgtcagggt ttaaattgat agtgtccctc tgaaagactg ctttgcaaaa
      241 tcaaggggca ggagccccca aaatagccaa aaccaagtta ttcttcacaa gtatatgaag
      301 aacgctccaa atcctaagta ctgaagggtc acttgtgtat ctgttatttt aaccaagtca
      361 ataaagtttt attataccct acctatacca ctgctgtaat tatacgttcc cttatacaca
      421 ctgcatacaa tttatatatg tgtatacaca tatactcaaa tatggaacaa acagattgca
      481 gcctcaatcc tatcaaaact tacccaaggg tgttgcctgc cagtctgccc agagtttcag
      541 aaccagacag aaaccatggg gagtcactag tcctgcctgg cctggatgtc cttcctgccc
      601 ctgagccact gctcaacttt gaactgaaag taaaagatgg taaatcagtc acaaaacaat
      661 cccaaatggg ttaagtacaa aacctggaat cccaggtcta aattctcagg gacttagtct
      721 ggtaacatac cagcttaagc aacacccttg gggaatattc caaactaatc taactgtata
      781 ataagaggta cactggaaaa agaaagtgga aagcatgcct aacagatctt atgtacatca
      841 gcaatccata gcagcacagt tgcaaatatg tattaagcta attagtgatt tgcgttagcc
      901 cctgcactgt cttcagttca tggataattg ccaggtattt tatccataaa catgagtccg
      961 agtacttcaa cattaggaag ctgtttacac tcaaatatga agcattaaat agtcctatta
     1021 agggggactt acctggactg aagacaacag acctagaatc tccactttaa gagtggattc
     1081 tacatgaatc ttaacaattt aacacagt
//
LOCUS       KCLA01000968             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15630upu ultra-conserved element locus uce-1206,
            sequence.
ACCESSION   KCLA01000968
VERSION     KCLA01000968.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15630upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-1206"
BASE COUNT          281 a          185 c          228 g          229 t
ORIGIN      
        1 cagtaaatca cagtattcct taaataaact tattgttcca aagaaaggtg gtttctgagt
       61 agcaacaagc tcattcggat cgagctgccc cggtgctttc gcggtacaga ttctagggac
      121 agaggttggg tttgcctctg catgctctac tgaacggagg gggaaatttt ctaaacaaac
      181 tgttagattc ctgggacaaa gaagcttaac acttgcagca tgataacggc tggagcacgc
      241 caacgggagg gtaaaagccg cgttaacatg cgcgttgtct gaaatttaac ccagtaaaac
      301 ttttagcgat cggcgataaa atgaaaccca aaatagaccg aaacaagtgg aaaattcatc
      361 aaggtctgat gatgcaatgt ttccagccaa tataagtata ctttaacaac ttgttcttta
      421 ctgtaatcca attgttaaca tactgaaaca attttggggc agctcataag attgatcgta
      481 ttcattagta ttttttctga cagatactca ggacgttaca tttacttctc agctggaaac
      541 tatacgcgag gctgccagat acggcaaacc gtgagtgttt ggggaggggg aggctataaa
      601 gctgttaaat tgcctacggt tctgatacag cacagaacat ctggtctgga gagcttgagg
      661 aaacaccatt aaacaggcag aaaagaaaaa aatctttgtg ctaagaaaca ggccaggttt
      721 tgtgtgcttc tgtcagaggc agacttggca gggcgtgcga tgattggtca gtcacgtaca
      781 gagccagaca cgctagcaag cggggtttgt tagacatctg gtcgggttcc accagcccct
      841 tcgacgaggg aggggagatg aaggaataaa aatgaagcag ctactccagc attccaaaac
      901 gtacacatca gggctctgat agc
//
LOCUS       KCLA01000969             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15646upu ultra-conserved element locus uce-5331,
            sequence.
ACCESSION   KCLA01000969
VERSION     KCLA01000969.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15646upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-5331"
BASE COUNT          220 a          178 c          205 g          204 t
ORIGIN      
        1 aattgatcct aagtgtttaa gattataatt ttaattgctg gaattttggg gcgattcccc
       61 ttttttccta accagtttag aaatacggag aggagtaaaa tatcgccagt tgtgcagctg
      121 aaatcgtgac acgccgaagc agccatctct tatcaattgg acaggggtgg ggagcgtgca
      181 cataacagaa aatactgttc tcattaaggc acggccaagt tactcacagc aggtttgcga
      241 ccagcagcac aaggacataa ccagctccgg ctggggatgg aggtaaaggg gaaaaaaacg
      301 cctgagccag caatctccgt gccgattccc ggaaggggcc tggggaagtg gtcacaggtg
      361 attgtcatgt gtgataatta ttattactgt acacctgctc ctccacacta attaactttg
      421 gatatgcaaa tcagtcctat tgcatcatgc ccctgctctc ctcccctaca gataagaaga
      481 tgttcagctg ctggatttaa ttaggataat gaacggcagg cccactgtgg cttggcaggg
      541 gaggaggggg ggtagaagct gtgactgacc ttttctccca aaacggtgac attttctata
      601 gcttctgagc actccaagtc acctccgtgg ctgggacgtt gataggagtg gattgatgag
      661 gtgtcattag aggagaaaca ccatggcccc agtgtttgcc gggagaatac agcaggtgtt
      721 ctgacaagga cacaagccat cactgttatt tgccaaacaa tcctcttgat tcactaaagt
      781 caagcacgcc tgcatttctt taggaaa
//
LOCUS       KCLA01000970            1061 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15662upu ultra-conserved element locus uce-3656,
            sequence.
ACCESSION   KCLA01000970
VERSION     KCLA01000970.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15662upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1061
                     /note="ultra-conserved element locus uce-3656"
BASE COUNT          333 a          175 c          199 g          354 t
ORIGIN      
        1 ttcaagtgac aatgtcagaa gttccctaga aataaggttc ttatagatgt ctttacagtt
       61 gtatgcattt gtataggcag tgtatttatg tgtgtttatc tataaagtaa attcctcatc
      121 attagttggg gtgagattga tgaaatactc agatctgatg cttaaatcag aagtcttcta
      181 ttgaaactca taattgtttc tttattccag caaatttaga aaatgaaact gttggtagag
      241 gtctgcaaat ggtaatatgt atttaaatct tattttagac caaaagaaat ttcttctaca
      301 aagatgaata tctttgtttt gtaggtctct ggccatctga agaagtgctg gcttactact
      361 gcctaaagca ccatgaaata ttcaggtaca gagttcaact taaaaatgtt ttttccaatc
      421 tgttttattg tatctgcatg gtaaagattg ttatgattta agtcttcaga ttaaatttaa
      481 aatgttcaag gtgaaagcat gttgctctta acaaagactt ctgagctgcc tttgggtact
      541 aatattgcac agcaagcttt ctgctatatg tcaaagactt ttgatttcca ctcaaggcat
      601 tttatttcac tttgattttt gggaaacaaa agtgaagctc tgatcgatca gccctgattg
      661 tgaaggtcag gaaaataaaa agacatcctt taaactggca tttgttgcca aagtgagcaa
      721 aatattacct aataaaatac ataataatca ctgcagagag ccatggacca attttcacct
      781 ctgagtgttg tgaaacaatt ctgaggcatc cagtgttgtt ttttttatat tttcttcatg
      841 tgtagaagac agttgccaag actccgagag taactttgga aaacagaatc catcccacat
      901 cctctctctt tccccctgag aatacaaagc ttcacacttg gaagtccttg aagtatcatt
      961 gtccagagta tgaattgggt gccagaaaag ccattataat gatgcatttg gaggcagaaa
     1021 ttatgctcta actgaatctg cagagcctgg agtagagaga a
//
LOCUS       KCLA01000971             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15678upu ultra-conserved element locus uce-234,
            sequence.
ACCESSION   KCLA01000971
VERSION     KCLA01000971.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15678upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-234"
BASE COUNT          313 a          141 c          142 g          279 t
ORIGIN      
        1 agtcagatac ccttccatac agtatttttg ctttaagacc cttattttgg cctcattatt
       61 aattgtattc ttgaatacac taaatgcata cttttttaat aaaccataaa tcactttatc
      121 ctaacatcag taaatctgag aatcgtctgg ccatttttgt ttaacccttg tctgcgatag
      181 tgttaagtgg caaagcaaat cacagtctag ttcttgtagg aagcaaaaga gatctcttct
      241 gcagcaaatt ccgtaacttc ttaattatac acagacttat tatctgcatc cccagtgtta
      301 taaagtgcca gaacttcatt agaaaaatta agatggaaaa atgaaggcac tactttgtaa
      361 atttccagtg gaaattagct ggaagaagca gaggaatact ggatcaaaag agggtaatca
      421 tgcttaactg tgccctagag cacccgcatg tataatacga tttgcacagt aactacctct
      481 cctattactg cttgtttgga gtattctgtg ttaatggggt tagctaattt agtattttaa
      541 cttaaaaaga ctctgctgat taataaatgt tgcacactgt gctagtaatt aaaataaatg
      601 gaagagttac aaatagaagt tgaattgtta agaaaacatt atctgaaaat atatgataat
      661 ccctgtttat cataatacaa taacagtccg gaaaatatgc aaattggaga agttgcaaag
      721 catatgaaaa acgaaatatg atttgaaaaa agttttcaaa tgtgttatat ttgtatgaca
      781 aaaaatacag tagccatttt ctctgcagcc aagccagaaa tacagtaaat tcttataagt
      841 gtagaaatca agatattttt acaaaaccct taaat
//
LOCUS       KCLA01000972             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15693upu ultra-conserved element locus uce-861,
            sequence.
ACCESSION   KCLA01000972
VERSION     KCLA01000972.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15693upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-861"
BASE COUNT          276 a          179 c          172 g          264 t
ORIGIN      
        1 ttctgtttca ggagaacggg ttaatgacca cacttgtcag aatcactgtt aacagggaat
       61 ttttttacct ctattttcaa tgtgcaattt ttgcttggga atgccctaca agaccctcaa
      121 cattaagttt gcccagaaat gttctaatta gctgtaccaa atggtcttct acgctgtcaa
      181 gttaatgcct cctatctgga tgttcagtgg ccatcatgta tcattgttca gcaaatgaca
      241 gcagtcaggt tattaaaggt gtaaatatta aattaacaac agtggtaaac attgtagctg
      301 tacttcactt ctcagcaaag ccaatgaagt ggatgacact gaatccatgc tgatacgctg
      361 caatgacaga tgggcatcat ttaacacaat acatcagtgg gcaacccacg taccacagct
      421 gtcctccact aaatgaatta gatcagggta attaatctaa ggtagaaaat atgactaaag
      481 tggtcctaag cggaattaga aacaaataaa atatcctgtt aaaaaaggga aaaaccaggg
      541 ctcagcgctg cttaaatgat agccaagaat ttaatttcac ttgcaaaaaa caatgcccat
      601 tgcctcaaga caggagtaca aaacgaacac ccttttgttc tccagtagtt tatcatagtc
      661 ttcgtcacaa tgtgcaacaa gggaggcagc agcaacgagg gatcatgacc aggctggtac
      721 atttgacaca atactcttac acaagcaaat tctctctcat ttattacttg tactgctgat
      781 gtaattattt cttgttacag attctctgct gatattgatt gagctggtaa acttttatgg
      841 cacttcatct cagggttttc ttagtgctgc ttttgtccag tggggagatg t
//
LOCUS       KCLA01000973             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15708upu ultra-conserved element locus uce-7046,
            sequence.
ACCESSION   KCLA01000973
VERSION     KCLA01000973.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15708upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-7046"
BASE COUNT          151 a           83 c           76 g          166 t
ORIGIN      
        1 tcaagcagga actttcttct tttctttcaa gtacatactt ctaatgtgct aatgatctta
       61 ctccaaactt atgcaataca tttctaagaa tcttagcagt gatgaggata agcagtgtag
      121 cataacacat agattttatg cagatcatca cctttatgtc ttgggaggtc tgctgtatta
      181 gtgatatata aaaactgatt actttctcca acattgccta gtaattgttt attattttcc
      241 tgttagacaa acaagacaaa tcaatactcc tgaacaccaa tcagactatg agtaacatca
      301 ctgtaaatag atttgcctca gacctcagtg ctgtattcat tttaatgatt tggacaatgt
      361 gagtccaatg gcaaagcgca agctaagttt aaaattaaat taagaatagg aattgcttac
      421 tttgttcctt tgttaattga tagggcctta tctctttgac tgtagttctt aaaaga
//
LOCUS       KCLA01000974             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15724upu ultra-conserved element locus uce-4525,
            sequence.
ACCESSION   KCLA01000974
VERSION     KCLA01000974.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15724upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-4525"
BASE COUNT          188 a          126 c          125 g          190 t
ORIGIN      
        1 aaactctttt ggtttcccaa gaatattttg agaggcctgt aacctttggc tgacacccag
       61 ccaggctatt agtttaacca tgggatgcac tactaaatgt acaagagtca gcagaatttt
      121 tccttctgaa aattgctgag ccctctgtga agaagccttt gacaacccag aagggataga
      181 cggaagggaa cagaataaaa aaagggggtt gacttatcgg cttccgataa ttggcagagc
      241 ttcagcttcc agtttctttt caacaaaatc ccctcgctat agcaaccccg gatcccattt
      301 aaatgtcatg ctgccctctg ttctataaac atggatcatc catcactaaa tatttagatc
      361 tgaattgttg gagctgagtt ctgtgccagg ggtaagggga ttaattcctt tcaaggtcct
      421 cacatgatgg atttttcact gaagtaaaca tccgagaaga gctcacacta tggccataaa
      481 atatataaat aaagtttaaa gtttaattaa gtcaacatta tttaaagtgg ttgtcatatt
      541 ttacggtgaa ctctttgtgt ttattttgta tgactcctca taaatagtct ctccccttca
      601 gacgaaaggc acggctgggt taaagttaa
//
LOCUS       KCLA01000975             371 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15769upu ultra-conserved element locus uce-4990,
            sequence.
ACCESSION   KCLA01000975
VERSION     KCLA01000975.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 371)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 371)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..371
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15769upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>371
                     /note="ultra-conserved element locus uce-4990"
BASE COUNT          120 a           70 c           75 g          106 t
ORIGIN      
        1 taaagctagc aaagtacatt actggtagta acagctcatg aaaaatacag cgaagaaact
       61 gctagtggca gaagcattta actttcttgt tagcagcctc ccccatgtgg cactttagca
      121 ccagcaagtt gtttattatg ttctgtgcca ggcaaaactg attaaatggg gctcttaaga
      181 atcaaagcgt tataaattca tggaaataca gcaagcaata aattccatgg aattaaaagc
      241 ttactagtgc tattagcatt tcagggtgtt tgcattgtta atagcaatga tgttcctgta
      301 agacaaggcg taccgacaga acccgagctg tagctgcttt ggttttgcac aatgtcatca
      361 tcacttataa a
//
LOCUS       KCLA01000976             329 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15785upu ultra-conserved element locus uce-7324,
            sequence.
ACCESSION   KCLA01000976
VERSION     KCLA01000976.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 329)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..329
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15785upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>329
                     /note="ultra-conserved element locus uce-7324"
BASE COUNT          112 a           59 c           58 g          100 t
ORIGIN      
        1 tgattatgta tctcccaaca ttacagagag cgactcgggg acgtatattt tgtgctaaaa
       61 ttgggaatgc actttcaaat atacttaaca aggaaattga atgtcttatt aaatccgtat
      121 tatcaaaaca ctgttcaaaa atttaaagaa agtagctttt cattttattc atcgaggaat
      181 ccattaaagc ctaagctctg aagtagtatg taaattatgt gcctttcaag gtagagctag
      241 ggcaaattca ctccatcaac taatgatgaa cctcattatg tgcagggagt attcataatg
      301 aggaaacaag ccacccgcca ttccatgtt
//
LOCUS       KCLA01000977            1122 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15800upu ultra-conserved element locus uce-660,
            sequence.
ACCESSION   KCLA01000977
VERSION     KCLA01000977.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1122)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15800upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1122
                     /note="ultra-conserved element locus uce-660"
BASE COUNT          365 a          249 c          196 g          312 t
ORIGIN      
        1 ttatactgca ataccaaact caacaaagct atttaggcag gtggtgtggc cgcaaactca
       61 ctatctgtag tgatatactc aaaatccaac aacatcctca cgtatcaggt gagggataaa
      121 ctagaactgt ttgctttgtc cacatacctc agaatcggct tcttttttta ccccaaatat
      181 ttatgcagca gattcaaaca gaccaacaca tgctaagaaa gacaactagt gctgggcagt
      241 tgctaaacac agaggagaaa aggttctcta cttttgaggt ctgacaggtc ttcaaattac
      301 aaacctgtca gaagtgttac ctaacattgt tgtctgcatc gcaatctgtt tccaagtaac
      361 actgggtctg agtagcagta atagaattaa ttatacttca ttttgctgtc tttaacagta
      421 ttgaccaaat ttaagaacaa atgagaagcg cttatcaagc ttgaagaaaa taatccatca
      481 gtggcacaat ttaaattctc tgcagttctc ttattaatca aagtaacact tactatccta
      541 tctccacttc ccattaacag tcattaagca ctgttgctga ttgaagcaat ttctttaggg
      601 atctcaacct catttttaag agaaccttct acagtggaaa acaatatcat acaggaacag
      661 cgacttcagg agaggaagaa ggttcttcaa tcatgttctg accttgacat ttctctgcag
      721 cagaagttca caaagtacac aaccaacatg ctccgaactt ctgccgtctt tcttccagca
      781 gcaacagtgg ccccctatta accagggaga aaaacaccgc ttcagaagac agctatagcc
      841 agcaggttaa gtgtctttaa caattgcacc agcctgcacc actgctaatt atttattgag
      901 ccttttcgta cacagggaac aaataaacaa aaaaaaagga gtcatgagac agctcattct
      961 gtcaccttac tgtcaaccct tggagaaatc caggccgtga taaagctcaa aggttatatg
     1021 gtacagaaaa gatttctgaa gtcaactttt tctccctgtt ataaacaatg tcacagattg
     1081 atagcttttg ttggaataaa tgcagtcctc ctcacaggaa gc
//
LOCUS       KCLA01000978             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15816upu ultra-conserved element locus uce-2388,
            sequence.
ACCESSION   KCLA01000978
VERSION     KCLA01000978.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15816upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-2388"
BASE COUNT          146 a          106 c           88 g          197 t
ORIGIN      
        1 ctttcattga gtttggggtc agtggagtta aacattggaa ttctatataa attccctgca
       61 caaccttaag ttttgggtta ttctttggca taacctattg caagctagaa gaaattccta
      121 aatacttcct tgttagtaat taacttaatt ctcctttaac ttaaagtacc ccacagaatt
      181 agtttcttta cctaacaatg ggaaccagta gacttttggt gtgaaaatga acagctgcca
      241 attgtattta tctctttcac taagaggttt agtatttatc ttcccttttg cgctttccat
      301 gtggcagcac tgatattcag cagctggtca gattgcaccc tggagccaca tctgcagcta
      361 tatagatcaa caccacttac gttgtatcag tgctagagaa gtttatcttc tgtcagatag
      421 atttactacc tatttaatga agtgttttcc cttccccaat ttgattttca aagcatgtta
      481 gcataatcta gtactgactg ttaaccattg attagttaag catttgcttc tttcttt
//
LOCUS       KCLA01000979             952 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15830upu ultra-conserved element locus uce-3926,
            sequence.
ACCESSION   KCLA01000979
VERSION     KCLA01000979.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15830upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>952
                     /note="ultra-conserved element locus uce-3926"
BASE COUNT          276 a          176 c          198 g          302 t
ORIGIN      
        1 ccctgagatc tccctacccc tcgctgcatt tgctcatttc cttctcagct ctcttcctct
       61 tgcttttcaa attaaggtgc acaggaaacc agcgcagttt ctgatctctc ctccacctaa
      121 aaaattagaa catcaaaacc agttttacca gcaataaacg aagctacttt gaaaagcgaa
      181 gcaaaaggat ctatctggag tcagtaagac attgttagga tctctttgat cgggagcctt
      241 aaatgaaaat tatcaaatgg cgctttaaaa catacaccct tttgtttgat tagcctgctg
      301 cagataacct ttattaaacc tgatctaaaa ttacagccat gcactggtgg ttctttgatg
      361 cctcggctgt ttcatttcct gtttatacta tgatacacgt tgcactagga gataaagcac
      421 ttctgaagga tattaagaca tgaaagtccc ttggctattt gctggcactg ttttgatgtt
      481 ttcttgctct ctagaaatta gcatatcctt ttcaaagcct gcctctgatg agagtaatcc
      541 tttgccatga tgtatttgct aaaagtcata aatgatagta tattgtgtaa agaaatgaca
      601 cataaaaggg acggtgctag attattgata atgaggcaac ttgtgcaact ccgcttttgg
      661 cttttataaa acacagtttt gacaccgtaa atgcgttgag ctgatattaa tgaggattta
      721 atacttctga gatgatagaa acttggttag gacaactttg caaaagaaag gggaagttta
      781 acggtttcac taatttggag aagacagtcg gttaagccct tggtaatgaa gagggatgga
      841 gggggttttg atgagcacag ttcaagggtg ctggggtgtt tattttattt gcttgtgtcg
      901 tgtctatcgc catagaaacg agctggttta attagagaaa tttgcgacaa at
//
LOCUS       KCLA01000980             439 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15846upu ultra-conserved element locus uce-2086,
            sequence.
ACCESSION   KCLA01000980
VERSION     KCLA01000980.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 439)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..439
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15846upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>439
                     /note="ultra-conserved element locus uce-2086"
BASE COUNT          152 a           68 c           72 g          147 t
ORIGIN      
        1 tccccagtaa caggtacaga gttttagaaa agacttcaag gcaaaaaaaa aaaagcatag
       61 aatatactgt tatggtgtta tttttgtctt tcatttttat gacaacttat ttgtacttaa
      121 aggaatcttt ccaaagagtt aagaagcatc attaaataaa gactgtgaaa tgtgcaatat
      181 ggcttattta tttaaatgtt aattggtcca acgaacactt ctaattagct ctatatttgc
      241 ttagcaaaaa gttttacaaa ttccaattgt gaaaagcagc tattttgagc tggtaagcat
      301 gttgcagcat cagctatgat ttttctatag ttctcagccc ttgaaggcac aatttaattt
      361 ttcatgtatg catactagca acggtaaaca cttgcgagtg taaagaacct tctttaatta
      421 gctgcacaac aattaaagg
//
LOCUS       KCLA01000981             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15861upu ultra-conserved element locus uce-4386,
            sequence.
ACCESSION   KCLA01000981
VERSION     KCLA01000981.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15861upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-4386"
BASE COUNT          129 a           59 c           76 g          144 t
ORIGIN      
        1 ctgggtcttt ctgtattttg ccccaggcat ttgtcctact ttcctttgac agaagaagga
       61 aaaccacatt tgtagtatta ctaaattaat tatacttttc taggcttaaa atattctgac
      121 aggtcaacaa aaatgattcc ttcaaaaaat atgaaaaacg gaaattgtgt aagatggtgt
      181 aattaatctt tcaataaaaa taattgttta cagttaaaat taatgtaaca tgcattcctc
      241 agcagataat aaattatagg ttttctcatt agcatttgaa ttgatttcct ctaatttctg
      301 aggaacacat gagcatgtga ctagattaag tttaattgga ctacagctgg tactgattgt
      361 gtgcggatag ggtgggggtt ctgactgatg tggtatattc ctgcattg
//
LOCUS       KCLA01000982             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15877upu ultra-conserved element locus uce-507,
            sequence.
ACCESSION   KCLA01000982
VERSION     KCLA01000982.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-507"
BASE COUNT          200 a          121 c           93 g          188 t
ORIGIN      
        1 ttaatataaa taaataacac gtagcaaaac caggagaaaa taccttatct gcatttctct
       61 tgcaattcca tttggacaac agtatttcct aagcgtagcc tattcactgc tggatatgta
      121 attaccttca gttcatagtc tagacattaa tgctttcgta gtatttaaga ctccttgtaa
      181 catgcgtgct gctttaagta agcaaggcta aatcttgacc agataaatta gcgaagaatg
      241 caataaaagc tgcaataaaa gaactttatc cccccaacct tcaagttgct gctaaatgag
      301 atttctttga aatgcagatc agttgaacta gattagtgaa ttttagctcc tgtcaacatc
      361 ataacaaaat acaaatacaa ttgttcactg gccttatctc catgcttcca tctgctgcct
      421 tgttatttac tttccttgat ttactatgca gatctaaata agacacatca aggagggctt
      481 acaacacaat agcttcttaa gctttacatc aaggtatttg aaactgaagc cctgaaaggg
      541 ctgccatcaa agacatatct ctaatgaact tccatatcag agaaggtttg gtatttaata
      601 ct
//
LOCUS       KCLA01000983             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15893upu ultra-conserved element locus uce-128,
            sequence.
ACCESSION   KCLA01000983
VERSION     KCLA01000983.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-128"
BASE COUNT          228 a          148 c          141 g          181 t
ORIGIN      
        1 cgacggtgca aattagattc taatgagaaa acatcagttg cctctttgac aatcttgcca
       61 ttcactcagt tacttctaat gaagacacac tccaaccggc gagctcgccg cgcgaaaggt
      121 caaagcgcgt taagcctcgc aaaatcgagg caaatgggaa ccccgtaacg aaaccttctc
      181 ctaaagcgac gtggcaatta gagtaattgt gcaaaaagcc gtcttcagga gaaaatagaa
      241 gaaattaagc tgccacgact gtaacaggtt agatgaaaat caaaatttaa tgtattctcc
      301 cttgtgtcat cttgttttgt caagacatca aatagaattg gaaagtacaa aataacaagc
      361 ccttgagaaa tcacagaagc cgaccttttt gatgttgttg gtttaccttg ttctcagtta
      421 tttgaacaat gatgtttcag atttaagggc aagataaagc ttaaaaatta aaacccgttg
      481 tcagtttggg gaggaggggg tgttgtccct cccaaataaa cgagcatctt acctaatcaa
      541 tgaatgcaaa tctgtccgaa actagcaccc gcaacaccta gcaattccac ttattagtgc
      601 aatattcagt ctggctttgc taatgttcat tcaactccag tacaaactaa ggatcctcct
      661 gctcggagag gaaactgtgc tggaaaggtt aaacagaa
//
LOCUS       KCLA01000984             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15908upu ultra-conserved element locus uce-7872,
            sequence.
ACCESSION   KCLA01000984
VERSION     KCLA01000984.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15908upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-7872"
BASE COUNT          283 a          208 c          221 g          243 t
ORIGIN      
        1 tccctgaatc ctcacgaaac actcagacat ctcctccatt cctgggtttg agttgtttcc
       61 gtgaaggttt atcctccctc cacacaccca gtgcttcagt gacctcgagc aaaggaaccc
      121 tgccccttgg acgagcatct ggtggtctcc gcaatggttt tatacaatct gtgtgaaaga
      181 gagcccaagt tccacccgta aggagtcgca ggatgaaggt ccaagtgaga ggaaccacgt
      241 ttcccctcgc atcgccattc agcccgccag gagctcccgc acggtctcac tctgcagagt
      301 ggcaagagga atcgaaggag caaaaataaa tattacagcc cgtaagaatt aaacatcacc
      361 tattcaaaca gcaattatgc tgttgaaaac aagatcacca cacctgtaca agaaaagaca
      421 agcaagctca aaacatctgt ttgcatccac ctgccaagca cctgttttgc tgtttcaatg
      481 ccatttgatt gctggagatg tagaggctct tgtgaggtaa tgagtgattt tacattatgc
      541 atgattgaaa acaggtgttc taatgctcta caattccagg catgaataat tcagtttgtt
      601 tagagcaaga tctttaaaag aagtatgggc tttatttgag tttggatgtt aaggttattc
      661 tctgcgatgg atggtagccg ggcttttcag cactgatgac catcgtgctg taatttggtg
      721 ggtaggaaag aaagctgcga aaggtaaagg aacaatgatt acacctaaag cacagaagga
      781 aggaaattgc aaggagaggg gtagaacctg tcactgttct aatggagaaa accagatgac
      841 ttttggcaaa gcctgcttct caaaactaac aaaatagagg ggtgaatgtg cctcagggat
      901 aagtaagagc cagtccatct cttggtctga attccagctg aatctgaata tactt
//
LOCUS       KCLA01000985             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15938upu ultra-conserved element locus uce-3331,
            sequence.
ACCESSION   KCLA01000985
VERSION     KCLA01000985.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15938upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-3331"
BASE COUNT          308 a          140 c          174 g          321 t
ORIGIN      
        1 tgtgaactat atatgtactt gttaagccta atttgagaat atttgccata acaagcagag
       61 aaatctttcc ctgcattgtg atttttgtca agatgaaaat taaagcagga agcattttca
      121 gtgaagggta acagaaacta tctttctgca tataattcat ttatatacca attgtctgct
      181 gcttttcacc aatataacat tgataagttg gcttttaatt actctatttg atacttgata
      241 tgtagcagta aaatgtttgt attgcaaatt gtacagtaaa ccttcagttt aggagcaaat
      301 taatagtctg gaactgtgag aatctgacta tatctgaata ttgatgatct cacttttcaa
      361 gtctccctgg gattgggggt gcgaggtgtt gatcattgct tctcactgat aagcaaaata
      421 tttccagagc atgaagaatt ctgtggtgtg tgagaaggat aaaccataat ctgcatcaac
      481 acactaactt ctcctctgcc atttgcattc aaaatcaggt agaagttatg ctaagctctc
      541 tattatagcc tcatgtatgt gaaaggtctt ccccttcatt tgaataaggc ctcttatgca
      601 tgtgaaaaaa gcacatttaa aaggaacgtt cctttaatta gggaggcatt tagaatcaga
      661 atctttaaat gttcactttt tgtgatgcta aattgtggag tattttcaaa tatgttgtag
      721 cagtcgtttt cattaaccat ttttatttgt atttattctt aagaggaaat tacatgctcc
      781 acaatgtgaa gtgaaggagt agattaatat gactagctag attaaggaaa atttaaatca
      841 gactgtttga tgaaatgtag gaaaatgttt aaatatagga ttagacttac aatatagaaa
      901 gcagtcaagg agatcaaaag aactctgttc agaaagtccc att
//
LOCUS       KCLA01000986             260 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15953upu ultra-conserved element locus uce-4902,
            sequence.
ACCESSION   KCLA01000986
VERSION     KCLA01000986.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 260)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15953upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>260
                     /note="ultra-conserved element locus uce-4902"
BASE COUNT           80 a           37 c           54 g           89 t
ORIGIN      
        1 agactaaatt tgtaatggaa aatgttgttt gatggtgttt aaatgcagag tgtgtcactg
       61 tatgaagcgt agggctcttt taaggttttt ttttttaact tcttgacatg tgtcacaatt
      121 tggaattctg ctctcatggg ataaatgcca gattacatgg tgtagtattt ttatcctctg
      181 tactttcact gtagaagcat acaacatcaa agaagaggca gatcactcac atcagcagaa
      241 aatggaatag gactataata
//
LOCUS       KCLA01000987             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15968upu ultra-conserved element locus uce-3901,
            sequence.
ACCESSION   KCLA01000987
VERSION     KCLA01000987.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15968upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-3901"
BASE COUNT          197 a           91 c          102 g          234 t
ORIGIN      
        1 attataagtt gtttctggac ctgaatgtca catacaagta tttttaaaaa ttctagttgt
       61 gtgacattgt gatgagagca tgaacaaaaa gctcctgagc tgcattttaa taagcttaga
      121 atcttttaga tttatcataa atttatatgt acagatttaa aatttatacc tggagacttt
      181 aatatctcac aattcatgtt cagatgtcat tgaacatgta attgtttcta catttcacat
      241 tatgctgtgc tttagattgt actataaatc ttttgtgacc atgacagtta tttcggaatg
      301 ttactaacgc tgatttatgc tcgttcatgt tactttaatt tgaacatact atttccaaag
      361 cgcccactta atgcagctgg tacttagaaa ggcatgaatg tcccgtaagt taaaatcttt
      421 acatttcaat taccacaact ttacaggaag tagaacattt tccaggagat taaattgtaa
      481 tcacatggga gcatttttta gttgtttggg tttttaaata tattaaaata tctgtgggat
      541 ttcttactcc ttccagtaag tggtacatta acagttttga gttgtctttt aaaggtgagg
      601 aatcaatcaa gataatttga caaa
//
LOCUS       KCLA01000988             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15984upu ultra-conserved element locus uce-7462,
            sequence.
ACCESSION   KCLA01000988
VERSION     KCLA01000988.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15984upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-7462"
BASE COUNT          277 a          152 c          168 g          250 t
ORIGIN      
        1 ctgtatagaa tggaacactt ttccgtgctc atacaacaga ttcgatttgc tctatgcagt
       61 gctggttact ttctggcaca aacgtttcag ttctgtgtca ctatgaacaa atccctccaa
      121 attcttaggc agaaaaatga attttaagct tgagataaag gagaacgtta agttcatcta
      181 gtctcagagt tgccgtatat tcatgtgaaa ttacagtgcg ttaaataatt gcacaaagta
      241 taggccagtg ttcctgacta tactttatgc caaacattcc ttttcacaga ataagcaaag
      301 cccaggaaat agtgaagcag cttagcatct attctaacaa acattaggat tcaggctgca
      361 tacgaatggg acaggaccaa caggattttc aactaaatgt aatagctgtg cgtatttgat
      421 tacttaggac ggacaaaatg aaataccata aggaccacaa taaaacattg atagactgaa
      481 caaaaacacg gtagtgacgt gcttcaagac agatagcaga gagtgatttt ttgtgacaat
      541 ctccctaagg cttttgtgct gttaccttta tatcctatct tgtctgcttt tatggccaag
      601 gagggaaaat ttgggaaaca attaaaataa tttaatatat ccaaaatcga taattgtttt
      661 cagtctaaca ttgcattcag tatctgtcac ttcccagtga tgaaatctgg catgcagcca
      721 acatgatctg tatgaggatg acaacgctat aaatatgtag attttggtgt tccttatctg
      781 tgactgtgat aagacactga cagaagcaag tacagatatg gcactgagta tcttaggaga
      841 aggtggc
//
LOCUS       KCLA01000989             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 15999upu ultra-conserved element locus uce-3603,
            sequence.
ACCESSION   KCLA01000989
VERSION     KCLA01000989.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="15999upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-3603"
BASE COUNT          194 a          105 c          127 g          186 t
ORIGIN      
        1 tgatgtggaa aagctctgtt cattggaatc tggggaaaaa ataaattgtg ttggcacatt
       61 ttattgtgtt tctgaacgaa gcaataaggc tccaacctta gctgagaaga ggtggaattt
      121 tggaactcgc tgaaaaagtt ttctcttgga agatggatta aattgatcat tttttcctag
      181 acggagtgca cttcaggctc attttgcttt gtaattaaga agaaagccag aaacatcatt
      241 tacacattaa gaatttaata gatatatttt tctagcttta tgcattagca caggacagcc
      301 cattaatgaa ataagtcttc cttcagggtc aatttagatg ggctgtaatc ttctgcaaat
      361 atattgcaaa tgaggatcat ttaatgatct taaaactaac tgccagaaaa ggatcggtat
      421 aattctccag acaacaaaaa aaggggttgg cactgcttgt agtacctttg taattagcaa
      481 ctggttaatt tcgaccctcc gcatcacaac aatgaaaaca ttatgttctg cagaggtcag
      541 gttcagcctc tgtgacctgg gaaaggaaaa acctgtggtt gtggttcagt caaacaagag
      601 ctccagctct ct
//
LOCUS       KCLA01000990            1014 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16015upu ultra-conserved element locus uce-1285,
            sequence.
ACCESSION   KCLA01000990
VERSION     KCLA01000990.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16015upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1014
                     /note="ultra-conserved element locus uce-1285"
BASE COUNT          272 a          278 c          214 g          250 t
ORIGIN      
        1 ggagcaacca acaggatggt tgatggtctc agagaggtga caaggagggc cctgcaacac
       61 cccaactctg actggatgga gttggcaagg gaagacgttt ggaagtgact ccccatcatc
      121 accacagcac caagaacaag gctaagggag aacgatgcgg tgcctacagg atgcactgag
      181 ccccctcctt tatttattta tatgattggt tttgctttgg acaccagcta gttccgggcc
      241 acaaggggtt aaccacaaaa gctgctttct ctgccttcac tctacctcaa tttccactgc
      301 tcccatcacc ttcctccccc accccctgat cttatgaaaa aaacccatca aaataactat
      361 tttatgtctc caaatatgca gatcattttc tttaatgaaa gatgcttgac gtctccgatc
      421 caattaatat gcaaatgcag gcgaggattt atttgtgaca ttctgtctgg gtgagagaaa
      481 acaaaaaagg cctgttaacc aaaacactaa ttgctgtgac tgattgtcac atatcatcat
      541 tttcatagga tctcctccat ccctggcttg cagggagctg tgaaccagga ctcggagact
      601 agcagacacc aaggagaaac agggcaacca gctacctgcc tggcacgctc ggatgagccg
      661 gggcctcctt cctgctgtac gcccagcccc tccagcttgc atcccttctc agcccaacca
      721 gtaaagtcac tctgaagcag tttctcatga cccttcctgt gctttctggg caaaatgttc
      781 cgttatcacc caaaaggact agtgttggtc tcctcttgtt ctcttggcac tgtcacaatc
      841 tgctcagaaa acaccagagt gaccctcact ttcaaggaga ggtgccctca gaccatgaac
      901 tgaactggga tcttaccaca ttctccactc cagtatctca gcctaaatca gcagttcaat
      961 tgggaagtgg ttttggtcca aagacactga accgaatgcc atcagactgg gaaa
//
LOCUS       KCLA01000991             606 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16031upu ultra-conserved element locus uce-6218,
            sequence.
ACCESSION   KCLA01000991
VERSION     KCLA01000991.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 606)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..606
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16031upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>606
                     /note="ultra-conserved element locus uce-6218"
BASE COUNT          152 a          160 c          140 g          154 t
ORIGIN      
        1 gatgaggcac ccaggagcca gctcagcagc tctcaagagc tctcagcagc aagtagctgc
       61 catgtcattc ctccctcgtt ctcactctag agtcatcttt gggacacagg agattcatcg
      121 atgcccagtt acggtgagga tactgctgag atgtgcagtg gccaaacatc tcctgtggca
      181 gtgaaagtcg tttgaaggag ctctaaacat ctcccttgcc tctgcaactc cgtacaaact
      241 tttcatgcta ttgtgaacct tatcagctgg ttttgatcag gagggcgcag gacaccctgc
      301 agtgtgtgcc actcacctga atcgtttaag gtgcagccgg aggacctgag gtagtctgta
      361 gatcattaac tgctttttcg cttcactcag agcaagaggt ttgggagaag actttcgccg
      421 tttgcctgcc caaaccgatt caaggtctgt gatcagctct cagaagagca cgctctgaac
      481 tctttcttcc agtaggcagg catccatccc acatgcactc aggacagaca tgcaagtaaa
      541 catttcctat cagttctcta ggatcaaaac tcacacattc aaaaagacct ggaaaatgtt
      601 ctggct
//
LOCUS       KCLA01000992             906 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16047upu ultra-conserved element locus uce-2109,
            sequence.
ACCESSION   KCLA01000992
VERSION     KCLA01000992.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>906
                     /note="ultra-conserved element locus uce-2109"
BASE COUNT          286 a          160 c          146 g          314 t
ORIGIN      
        1 aataatgaca cgaagttatc tgatgggtgg tatgaggaca ataatgtcaa gattaaacaa
       61 gatgctgatt aatatgcctg atcttaagca tattattttc aaaattgatt tacattttct
      121 tgttaccact ttatctctat agctgtggaa atcaatctct gccatttttc tgcttttata
      181 gcctaatttt tccttctttg tccagcatta tcaaaccatg ccacaaattt gattacagtg
      241 ctgtgatgcc aaaatctgtg gacctggcaa aatctatcaa gcagcatatc taggtaagtg
      301 aattaaaaaa gcatctgagc aggtatctgg tgtgtgtcac agttcattct tccataataa
      361 actatgttct ccttctcatt catttgtcag tcatagtaac taaagattat tatttgctgt
      421 atgtacgtga caccagcaat ttgcaaagtc tgttggcaag aaaatcaggt tagaatgaca
      481 gagtgagaaa ttaagcagaa gtctgatgca attagctaca acaatcagtg ctctaatttc
      541 tgatttattg tttcctgttt tcctgctgtt ttcagtccat gcatactgta tgtccttcat
      601 ataggtcaaa caattgcctt atcagtcctt gcaaaccaag aggtcagagt taacaatatt
      661 tgtttaagca tgcaggatgc ttcccactgc aattaggaaa taactactac taataggtct
      721 ttggtgctat ttcctccttt atacaacttt gtaaagaaat aaaagtgata gggaattcat
      781 atttcacact tcataaatat ttctttcaga tacatttgac tagtagcatt ttgttttgtt
      841 aaaatcacca tattgattcc accaaatggc aatccaacaa gaaatgaata tgaaatatat
      901 atatgt
//
LOCUS       KCLA01000993             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16063upu ultra-conserved element locus uce-1501,
            sequence.
ACCESSION   KCLA01000993
VERSION     KCLA01000993.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-1501"
BASE COUNT          152 a          102 c           71 g          148 t
ORIGIN      
        1 ctctatgctc aagtataaag tagatatgta atcttcaact ccctaaacac tccaatttgg
       61 ccacgaaaga tgctgtttta catttccaaa cattttcccc tgtcactact ttttatactt
      121 cagttctcag gttgtaagta tttgttactt gcaaagcaac tccttttgaa cgcagaatca
      181 tgggaggcat ttgttactaa ctgctaatgc agcctgccaa acaaaaactc cctgctggtg
      241 acatgaccac ctagtgacct ctaaaaatgt tttaacaatg tgaaaaatat ctccctcttg
      301 taggaaacag caatttttta aattaaatgt acattgaatg ttcgcttaca tacagataaa
      361 tggtattcag agtcaccttc tctgtttcca atttcaatct tttgaaaccc agcccaaagc
      421 taaataaata aacgttgata ctaagaggaa actaagagct caagagcctt gtg
//
LOCUS       KCLA01000994             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16078upu ultra-conserved element locus uce-7490,
            sequence.
ACCESSION   KCLA01000994
VERSION     KCLA01000994.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16078upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-7490"
BASE COUNT          143 a           71 c           62 g          130 t
ORIGIN      
        1 aaaaaagtta gtggttttct cagaaggatt ttcttttata catagcttta tcatataatt
       61 tagtccctgt tgggcacact gcctaaattt aaacacaaac agtcaagcaa tgaagaaaca
      121 ttaccacatt tactgtgaac aaaaactccc agttgtacag tgaaatttta atacatttca
      181 acttatctct tttactaatg gggagagtac aaaccctgca ggaattcgct ctgcaaactg
      241 gtaattacag tagactcact tttttataat gcatatgtat tttcagacac aagaaccata
      301 gctgcccttt tgatgtaggt tacaatagga atgtttaaaa aaaaatatga aaatctacag
      361 caattctaaa ggaatccatt atttcatggg aagatgtcct ttagct
//
LOCUS       KCLA01000995            1158 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16093upu ultra-conserved element locus uce-7801,
            sequence.
ACCESSION   KCLA01000995
VERSION     KCLA01000995.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1158)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16093upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1158
                     /note="ultra-conserved element locus uce-7801"
BASE COUNT          349 a          185 c          255 g          369 t
ORIGIN      
        1 acaagcaaag ctgaggattc taaaataatt ctgtgttcat ctgttagtga ggtgatttgt
       61 aatggtttct aaatagtaga gactagctgc agccttgtct aacactgacc ttaccacttc
      121 acatgactga ttctgtaagg atctacatgt aggtgtttag atgtttcact gcttccatct
      181 gacataaact aatgatgtag tctggctaaa catggtgaca tgattaaaca gtgatgttaa
      241 ttagtggctt ctatgagaga cttgatccct gtttttagca gcatttgtta tgcatgtaga
      301 gaagttaaag ggacagaagt ggttgttttc tttattgcat ctgttaatag cattaagagt
      361 tcaggaaaag cactgaaact gtctggtgaa atggttaagg tccatcttca tgccctgtgg
      421 ttgtggaaaa acaatatctt tgtgtgaagg gaaatggcaa ttttctgcgg gcagtaatca
      481 tctgtactat tacttagatg tcaggtattg atgatcctat ttcaatcaaa catacctctt
      541 ccagagagct tttgatggga ggaatttttg gaagggttta ggaaggttaa atctgtgaga
      601 catggcttcc atctggaatg cattatctcc aaagatttat tagccagagt gcctctgcat
      661 aatgttccat ggaaagcaaa gccctgcatc taatttccag catgatgtct atatgaggag
      721 tgatctttga aatatcatag gtgacaatca agtttgttat aaaaatagta aatgcccggg
      781 attttcatgg cggctctttt aaatccctca tgagggctgc taagcaggta gttgatttgt
      841 tgacaaatga taaaactgta ggaatagcaa cacgcatgac atttttaaac aggatagact
      901 ctaagcagta agagtcgcat caggaaaatt atcaacattt agtggttgct taactctgtg
      961 aaggatggca gtaagaaata atagaggcaa tatttaactt gctgtttcag tgttttctga
     1021 ttaaatctct tccaagaagt gctgcttctg atcagcaagt ggaagggaaa gggctttgca
     1081 gattctaatg cattaacaat gccgattccc tgcaacacta aaccatctga tgacgattga
     1141 aaagagtaat ttttagtt
//
LOCUS       KCLA01000996            1095 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16108upu ultra-conserved element locus uce-710,
            sequence.
ACCESSION   KCLA01000996
VERSION     KCLA01000996.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1095)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1095
                     /note="ultra-conserved element locus uce-710"
BASE COUNT          354 a          249 c          206 g          286 t
ORIGIN      
        1 ccattattac gctttttcca ttgttaataa ctgtacaaaa taatggtgtc tactaaaaca
       61 gagtaactat tccatctctt ttacatgaca gtgggtccgt gtttgcagtt gcaggcttac
      121 accgctgcac agattgtctg cctgtagctg cagcgaacat ttaaatcagc gaacacacaa
      181 aataggtcta acagcacagg gaagtaacca cggagcgaat cactccaaca gttagcatct
      241 attttccatg aagcacgggg taaagcatgt taatgtaaag cacagacatc gcagcgcagt
      301 gtagtgttac accgtgcagc gagagcccag cagtctgcca ctgagctgtg gcaggcaaac
      361 cgtgcacaag tgcttacagc tgcggtgaca tggtgctaag catgttttaa ggctagtccc
      421 agtcgagcgg catcttatcc aaccagaaac aatcccacaa tccagctctt tttaagtgat
      481 catccttgta tcataacaga ttaaggttgc agctactttg gattatggtt aatctaacct
      541 ttatccatcc ccatcttcac ctgaaactta caaggaccaa gagtcaattg ccagggcata
      601 attcacaatg acactgatct ctccttcctc actctaatta tccggattaa gaataacact
      661 tttgagtaat tattttcaca ttggataaac attaagcttt cctggattta tctgagcttt
      721 ttcttaacat gaaatagatc caagcaggct tataagaaca taactgacag tagtgacagc
      781 ttaatcaagg aaaccctaaa caactaaaac aataggaagt gtttgtttca cattgtttgg
      841 aataatcaag aaccagaaac ttgataaccc actgacaaac tacctactcg aagaccaaag
      901 aaataataac atccaggcag atcaattcta gtgacttgaa ccgtcttaat aaagatgcag
      961 attctcctct gacgcagtag cagctcagaa gcaaacagga gtttaccgag taggagccca
     1021 cagagctgct cctttaccag actgatatta cagagagcag aaagaacagt gttaccagcc
     1081 tgttaaaact gtaat
//
LOCUS       KCLA01000997             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16124upu ultra-conserved element locus uce-5710,
            sequence.
ACCESSION   KCLA01000997
VERSION     KCLA01000997.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-5710"
BASE COUNT          216 a          157 c          156 g          162 t
ORIGIN      
        1 caagagcttt gaggttaaac acaaccgacg ccggcggcac ctgaatccaa tcagtacccg
       61 ggctccgcga agattcacac gcgaggacta aacctgtcac aaacgggtcg gtttccgatc
      121 ctcccggagc caagtcgctt tcttctgacc cccgtttaac aaatcaactt aacgggcgtt
      181 gggagcgcta taaaacttaa caatggagtg atttgaactt ttaaaatcca gttatgaagc
      241 ggagagctcc tgcaatactg gaaatcaaat taaatcgaga cattttttaa cagtcttgac
      301 agatctaatc ctggttacca tgtaaattta tggtaagctg ctgtgatatt agccacaggt
      361 gctactttta atatatagcc cgcatctggc tgggaataaa acttctcaga ggactgagaa
      421 tgacctcact atcagacaat ggagaagtag ggaaaaaagg aaacccccac aagaccgctg
      481 tggcacataa aaaatgggag atgtggccca cgaccgacta ttgcacataa aattccttct
      541 aactctgcag attgtaggtt agaggatatt atgttttcaa gacgtaaaag gtgcggacgt
      601 tttcgagcca aacagacaga agatgaagta cgtaaagcgg caacgaaaca cgctgcctgc
      661 gcctataaac ccgaggtttc caggctttga t
//
LOCUS       KCLA01000998            1006 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16139upu ultra-conserved element locus uce-7269,
            sequence.
ACCESSION   KCLA01000998
VERSION     KCLA01000998.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16139upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1006
                     /note="ultra-conserved element locus uce-7269"
BASE COUNT          318 a          185 c          183 g          320 t
ORIGIN      
        1 tgtaatggca tccactaaac aatctgtgtg ttttaaagtc tgctctgttt aaagtctctt
       61 tttcaaaaaa tacttctaac ttttcttcct ctgggattga tttcgggata gctgttgttt
      121 aagatgctgt cagacatttt gtctgattgg aatttctaca caattctcaa agattcaaag
      181 gtatccagca aaacagcagt aattctttta gccttccttc taaaattata atgaaataag
      241 acaaaataaa taaaaaatat taacttaaaa gtgaagcagg agagaaaccg tttctctttg
      301 attggtttcc actgctgcta attttaatgc cacccattgt tcagctcttc agtctaattt
      361 tatgttaata tcctgaaagt tgtcaaatct tggcaaaacc tatgcataaa ttacacagaa
      421 agtagctcac aggaggggga aaataatgac tgtcatggtt agccaaaccc attaatagtc
      481 tgacaagcaa taacccaaga gctctggtca actgctgcag acatctgtga aacttttgca
      541 attaattttt ttttggagga ggtatcagct gtgaaatagc acataagtga ctgattatta
      601 tcagctctgc tgatgagggc agaactgatc aactccaaac attcatccta ctactacaga
      661 gtgattgttt tatgaataca caggttttgt tttctgtatt tgctaaggca ttctgatctc
      721 cagaaaggga aaagcagaat caatcataca tgagtacctc tttacttaca catactctct
      781 tacatcagca gtttgcaaag aactttacag aggtcatttc agttatcttg catctaaagt
      841 ggtgaaactg agccagagac tatgtctgtg tgttcatgca catgacaaga tatgagtgag
      901 gctgagaaat gaagatggac ttctctgaac tcagatatta agccagggct atctctgcta
      961 tgtcaggcag tgcttataag actgtacagt cacctattta aaagct
//
LOCUS       KCLA01000999             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16155upu ultra-conserved element locus uce-4542,
            sequence.
ACCESSION   KCLA01000999
VERSION     KCLA01000999.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-4542"
BASE COUNT          119 a           54 c           71 g          102 t
ORIGIN      
        1 gcaatcatgt ctgcaaatgc actttatggg gctgagaaga tccatttctc aacttaaact
       61 acgtaacatt taaatatcaa aaactttgtt ttctaatgag ggaagtattg aggagggaga
      121 aatgaattat atgcttgatg tatactgaag gctgggaaaa ttaaggccat ttcccatggt
      181 gagaatgcag tgatttcagt ttgtgagagt aaattaaacc tttgggagaa tttgtcttcc
      241 attaaattga acagctaaac aggcacagaa gattttaatg tcaccaccag caaaccccaa
      301 aggttacaaa aagaatcaga aacactgttt tcttgtttgg aagttc
//
LOCUS       KCLA01001000             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16170upu ultra-conserved element locus uce-1698,
            sequence.
ACCESSION   KCLA01001000
VERSION     KCLA01001000.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-1698"
BASE COUNT          221 a          174 c          152 g          215 t
ORIGIN      
        1 gctgatacag ccctgggaaa gtccatcctg ctgccctgcc cgcacacggt gtaacctctc
       61 ctcaggagct tataagaaaa tccaccgttg aaataaatag caactcccaa cacatgatca
      121 aagaagaaat aaatctttta cccttctaag acttttttaa aactgaaatc ccttttttta
      181 actggataac agttaagagg ctaccggcca tccttttaac tgggagctcc gttttaaatg
      241 cctcctgcgt ggatattgga cagacaaacg gactggtagc tctcgggagc acaagctttt
      301 aaaataaagt ttgcgtgtag tatatgaaaa acatattgtt tggaatttaa gttctaatat
      361 ctaggaataa acagagcatt aaatcaagca aaactgtgac aaggccaata tgcacatgga
      421 tgatgccagc gaggcatctc cagccctttg ttcacagctt aacaaaactg tgccgtcaca
      481 ccactttagc tcaacagtgc ctgtcgaatg ggcatcagca gatcagccaa tgcctgtcac
      541 acacacagct gaaaaactgt ttgaaagcaa ggcttacttt agcacaagtc tggtaggaaa
      601 agtgagaggg atttttaatt gtctgctaaa gactacttat ttatttttat attcccagct
      661 ttcttcctcg gggaggtgac acagggtggt tctttttcac cttttttaag gccctgctcc
      721 ttgctgtgct gctcccttcc atcctacaga agatttgggg tt
//
LOCUS       KCLA01001001             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16186upu ultra-conserved element locus uce-2477,
            sequence.
ACCESSION   KCLA01001001
VERSION     KCLA01001001.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16186upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-2477"
BASE COUNT          267 a          192 c          161 g          252 t
ORIGIN      
        1 aatggctaag gattagcaca gaccatcaga cgcccaaata accttgctac agtcgtttgt
       61 gtctttcatt tctagtcgca gcaaaatagg gggcaaaata ctgcaactga ctaaacacta
      121 attctaatgc agtgggtctg aaaagtaggt aagataccac aacaagcaca acctccatgc
      181 ttctagcagg ttgaatgata acccttaaag gcaccccatt aaaagccaac aaaaagattc
      241 ttcacttcct tctctctgct atccccttaa aacaaatgct gcaaattatt agccaatgcc
      301 agcaattgga gagagaagca gcttgcatgc agggatattt tcacagcgat tctaatctga
      361 gaaatttact tgctcttccc cttctatctg ataaactata cattcaagca ttctcattag
      421 tgttcggatc accaaagaga gctggagatg aatcagtcca tccacccctc ctctccctgc
      481 tctgtcgaga ttatttcatt gaaatgttca ttttcatccc tgctggcaac attagaatgg
      541 aagtatttaa cctgtttcca ttacttatac aaattaccat tatggggtag gacagatgtt
      601 agaatcatgc cacataactg acttccatac attctttaca gagaggataa gaagagggaa
      661 agctgttaga tcatattatc cggtctcaat aatgttctct ctgctaccag attcattaac
      721 ttccaacatc aacgtttcac tttctttctg cgtgaaaatg ctccgtctcc ttgagctcat
      781 ttaatttgga gcaggaaatc tttgtcagga ataatttttt gatcaggtgc tctaactaag
      841 gggtgaaggg gggctggggg aagaataaag aa
//
LOCUS       KCLA01001002             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16202upu ultra-conserved element locus uce-1360,
            sequence.
ACCESSION   KCLA01001002
VERSION     KCLA01001002.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-1360"
BASE COUNT          252 a          183 c          174 g          232 t
ORIGIN      
        1 aacacacagg cacagactct gctttcccct ataaataaat aaacgagtga gaaacgggtg
       61 cccacggtca ccccagacca taaatcctta cgaagagcat cgcagcagac agggaggaag
      121 tgctgctgct cccctgcccc tcttctcgct gtcctcagtg ttatttacac tgatgctgac
      181 tgcgagtaaa ccaatattat ccatctcgct gttttcccct taatttgttg actttaattc
      241 gagcaagcct taaataagtg cttactggag atgaagggag atatgcgagc gaggagttct
      301 tttatcaaca attttgccac agaaatacac aaacatttcg atggctcttc attagcaaac
      361 aaatcaacaa gtgatatttt aatgcatgac tttattccat ctctgtgggg accgcagttg
      421 agagtgtgat gtacagtaca gagaaaggaa tcatcagcca caatgtccca gggctctctc
      481 cattgaggac ttctcagcct ctgcttaaag agtgcattta attgactgat agacagtagc
      541 ttctttgttc gcagaagaca gcgaagtaat ggcagcttga aaatcgtacc atctacagga
      601 tctcctgaga ctagtaacag ggggatatgt gtcaggaata aataaataat ctaattatta
      661 agccacttcc tgtcaagtta actccaattt gttggctttt gaagacaaca aaacgaggca
      721 tttttcctca ttatgcttct ctttttatac cactggtaat cacaggcgga ttaaaggggg
      781 cctgattgtt ttttttgtca aggaactgag aagcagccaa cagtacagaa aaacagagtt
      841 g
//
LOCUS       KCLA01001003            1075 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16218upu ultra-conserved element locus uce-1822,
            sequence.
ACCESSION   KCLA01001003
VERSION     KCLA01001003.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16218upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1075
                     /note="ultra-conserved element locus uce-1822"
BASE COUNT          297 a          224 c          209 g          345 t
ORIGIN      
        1 gttgccagca cttcagtact gtcagcctgc tgtccccagt tgtctgtgcc tttccccccc
       61 tttactacac ttccagccgt tcctgatcca aagcttgtga catcttccaa gtcctccttg
      121 cattcaagac tccagttcag cgtgtggtat gctgtgcttt tccagcaggc tgctctttgt
      181 cattacctct ccacccaagt gcatgttggg ggtgagtatg tgctctcctc agttagtgca
      241 gggagctaaa atgcaagcaa tgagcactaa agccagattt ttctaatgca aagcatcaat
      301 cagaatcttt gtgttctcat agaattattc caaaagagta acaatcctgg aaatagcagt
      361 gtaattctgg gtcttaaaat atgaggcagt gtttgcttac agggtaagaa tgtgatttaa
      421 gtttacttta gcacatttct tcactgtgtt gtgctgacat gattgttcaa agaaaatgtg
      481 cttttggaag gaaaaggtta aagtttgcta ctgatattca tcaggagatg gatatttaat
      541 ctttaatctc ttgttctagg cccctacttc ggatcaactc attatcccga ataaacgatg
      601 tgtcattccc attatttatg tttcactgca gccaaagtat ctggacctcg ttttggtaag
      661 caccattcat ttcgacccat tcagtattaa tctcccttct aacatctttc ctgtcctatg
      721 cgctgtcccc tatttgcttt tatgttttcc gcagagtgtt tataaaagga taatctttta
      781 caaagcagac agaatttttg tgtataaact gctctgtttg aatgcctcat tgatatacca
      841 tctaaactga agtgttcagc aagattagtg catccactga gccactgaac tggggaaaaa
      901 tatgggaact gctcctttct ttatggcaag agagggcagc taatgatgcc atcttctttt
      961 aaataggata cttttagcag atggactcag agaatatgaa tacatttcac aaataaaaaa
     1021 taatcaacgg agtaggtggc ttattgtgac aaatgaaagg agaacaggca aaaaa
//
LOCUS       KCLA01001004             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16233upu ultra-conserved element locus uce-990,
            sequence.
ACCESSION   KCLA01001004
VERSION     KCLA01001004.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-990"
BASE COUNT          308 a          188 c          180 g          269 t
ORIGIN      
        1 ggataagcaa aacataacca cttacatgtg tgcattgaac cttcttgtcc tttcagagag
       61 gcttctgggc agcagttaaa tgatactgaa gtatttcagt ctttgggaaa aaaaagcgtg
      121 acatccctgt tggcatctct gctgagaaca cactagcttt actcaaaaaa catcaaatgt
      181 gactttgcta gctgtggtaa agctgaacac tgaacacaga ggcaggagag gtcatagagg
      241 aagcagtagt taacggggta aagtgagtgt tataatcccc aaattgcagt tagactgaat
      301 gttttcagac aatttgcctg tctaaaccaa gacagtatca tttttctttc ttctaggaga
      361 gggttaagca taatctgaag ctttggaaat ggctgctgtt tatactaggg aggccttctc
      421 tttaactaga tccttcagga aaaaacaaat taatcaacag ccagctgaag tgggtttaat
      481 gattgcattc tgcatacaat cagcttttcc cttttcaagg gccatcaata tgtcaaggga
      541 agacatatct gaaggatata gctcttaaca tcaaggttat ctattctcca caaggctccc
      601 actccttact gggctgatac tttacactgc ctgtgtctaa cattttcatc aactctgcaa
      661 tcaatcaagg taataatgtt gtgcaaaaaa tcaattaaca acgcaattaa actttcctta
      721 ttatctcaaa gggctgaaat aatacctaaa gggaagatag actcactgaa tgcagacatc
      781 cataacccaa tgtgaaagtg aattatgagg ttagacagat gcaggcatgt actggcactg
      841 ttattttcaa agggatatat ctcatccagg cagtgtatca gtcaccacca atcccatacc
      901 ctaaaattcc aaattacttt taagaaatat acgatgtgca atatc
//
LOCUS       KCLA01001005             475 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16248upu ultra-conserved element locus uce-3225,
            sequence.
ACCESSION   KCLA01001005
VERSION     KCLA01001005.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 475)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..475
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16248upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>475
                     /note="ultra-conserved element locus uce-3225"
BASE COUNT          161 a           68 c           86 g          160 t
ORIGIN      
        1 tacttacttt gtttttgatt ttactgggta cccatagctt aacttaatga tttgtataag
       61 tgatagtaat tgctgaaact acagtcgagt attattagct ataaaatgaa cacggttata
      121 tgtccaacac aactagcaag gaacagaaat gcagttgtat ccaagagaaa ataattacgg
      181 caataatcag tgtaattcat gataatggct gaattgaatt tcacaccata gctccaagca
      241 cttacattta atgaatgtag tttgtgcttg tttactaaaa aggtttttag cagaaaatcg
      301 ataatgtaac ttcagcgttt ctaattgcaa acgcaaaaag gtagccgttc aataaggatt
      361 ttgtagagaa aatgaaggtg tgtgagtgca cccgatgctg ttactttaat taggctacct
      421 gtacattagt gggatagttc cttaatattt atttattact tcatattgat taaaa
//
LOCUS       KCLA01001006             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16264upu ultra-conserved element locus uce-2645,
            sequence.
ACCESSION   KCLA01001006
VERSION     KCLA01001006.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16264upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-2645"
BASE COUNT          190 a          191 c          232 g          213 t
ORIGIN      
        1 ccagaaaagc cccaaattat ctgctggcct aaaagaagtc tgctgtgtca tctgagcgcc
       61 gttgttgtat ctggaaaggg gcagagcagc tctcaaagcc tgtttctatg cagctctacg
      121 tgcagaggga cttgagggtc ctccaaaggt gcaaattgca gctgcacaat taaatcctgg
      181 ggtgtgtcct ggcctttgcc atcccctggg cagcacaagc ctaacgagga gacagtggca
      241 ttactaatca gggctttgac ctttacatgg cttttattga acacacattc cacacttccc
      301 caaactcccc tccaaaacat tgacatttcc gctgatagat tgggtcagat tttggagtgg
      361 ttgggggact ccatcccctc gtacaatggg gaaattctta cagctaaatg ggcttattca
      421 gttagcgcag cagctggtgt gatttcgaga agaaaataaa catttccttc aaatattttg
      481 attggcaact ggacaagcga aatactcacg ctccgattgc cagggtccag gcgagcgaat
      541 gagggctgga cgtggagtga gccagggaaa ccatagtaaa tcctgcgagg cactgctacc
      601 acggcggtat ggggtgagtg agatgggcag ggggcaagcg gggtgtgatt ttcgctgctg
      661 ttattggctc ccctcgtgaa gggagctcgg ggtccaacct cacccgctcc tatttttcca
      721 gcccgttgct cgcttctggg attgtgttgc tgctgagtta ggtggttatg gagggtatta
      781 gtgggaatgt tttatttgga acttgccggg gctgcttcag caggca
//
LOCUS       KCLA01001007             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16280upu ultra-conserved element locus uce-7940,
            sequence.
ACCESSION   KCLA01001007
VERSION     KCLA01001007.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-7940"
BASE COUNT          218 a          178 c          132 g          287 t
ORIGIN      
        1 cttcatcatt tatccagttc aaggaaacac gtgaaataaa tacttttcaa atctttttgc
       61 tttgcttgat ttttcaatgt catgcttttt tttttccccc tctgaaatgc ttaaagtcaa
      121 attgcttctt tcccattacc aggcttttgt gtctgcctgt ctggtacatg gctttttttt
      181 atccctttgg accctgacct ggtagtcatt attttgtctt ttatcttcat cttctttccc
      241 ctctattttt tcttcttttt tttattagac tagtcagcct tgatataagt cttcccaaag
      301 ctactatcca ttacactgtc agcaatgcac gctgccttac tgtaggccaa gtgtcaacag
      361 aaggtgaggc agaaaatcag ccacaatcta aagctaatta ccctgcctag aagttaatta
      421 aatacttgtt aggagcagca gggtagatcc taattaaact tgtctaataa cagtatgctg
      481 acatactctg acactgggaa ttcctacagg gtttaaataa ttgtacaaag ggcaataata
      541 cctgtcacat catggtgtgc aggcaaacgc caaagatgca cattcctcag tattttctgt
      601 actaatttgc cacatattgt gcacttcaca tgagtttaat ttacacattt taattgtggc
      661 gccttggatc cttctaaatg atcttactgt tgctgatcta agtgcaagcc actgcaaagg
      721 gtcactagta ttctatcgta tcatttaata agcaaaccgg ataaaatcct gctgctgatg
      781 atgccagagg attacttaag aaagcctcct ctttc
//
LOCUS       KCLA01001008            1140 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16311upu ultra-conserved element locus uce-4658,
            sequence.
ACCESSION   KCLA01001008
VERSION     KCLA01001008.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16311upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1140
                     /note="ultra-conserved element locus uce-4658"
BASE COUNT          294 a          252 c          305 g          289 t
ORIGIN      
        1 agaggtgggc cccaaatttc tgggaccacc tggtggggga ccgattccag ggatcattgg
       61 atttgagagc gggctgttag gatttgaggc atggtgaggc ggcccgcgaa taaacggtgg
      121 acggatttgc tgcataattt gctgttccat gaatatgggc agaggaaccg gcccacggtt
      181 tgtcatcacc atgggaggac tgcgaggtgg gacaccgatt ggaggcacaa tgctagcagg
      241 tggctgaaca gaaactggtg gaatatttgg attctcactg atgggaatag gtttgggaac
      301 tggcgtgggg attttagtga cagagcagtt ggcagtgtca gacggagagg cagtggtaga
      361 cgctgatggt ccaggacctt gaatttggcc agctgcagac gctggggatg gggcttttct
      421 ccgagcatct gctagcggta tattccaaga atctggagtc agcagctgca ccccagtgcc
      481 ttctgcttta ttttcgactg gaggatgtaa tgtactgcac agtccagctg gaagattggc
      541 ctgtgtctct ttgtagaaaa tgtccatttt gtactgattg agacattttg cactgcagaa
      601 ctgaagcctt ctttccccgt ccccaaaatc cagatactct tttgtgtgtc ttatgtgctt
      661 acaccagtca catacctaca acacagtaac aaaatcaaat caggtaagaa aagcaatctc
      721 ctcttcctta aaagtcattg ttcagttgct ttctacatag tcatggtact tctgcagcag
      781 aaaacaagag ttacagctgt gaaaaccagg ctttatctct ctctaaaata gtggggactt
      841 gaatgccatc cccctgacac atctccagga ttacacagct taaagccctg cctcacagaa
      901 gactcctcag ctggcatgaa ctgctacaac acgtatatgg aggagtgcaa actccacctg
      961 agtgtggctg gggtcactcc ttagtgctaa tctaagcagc cctgagctgt ctgaggtgca
     1021 ggactacacg agtggtatga taactgtaaa aggactcaga aagttgctgg gaatgaatgc
     1081 aaagtgtttg cactaagctg cagcacactg caatgctact cagagtgtca aacagtcgct
//
LOCUS       KCLA01001009            1084 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16326upu ultra-conserved element locus uce-4428,
            sequence.
ACCESSION   KCLA01001009
VERSION     KCLA01001009.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1084)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1084)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1084
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16326upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1084
                     /note="ultra-conserved element locus uce-4428"
BASE COUNT          240 a          233 c          316 g          295 t
ORIGIN      
        1 aactgccttt gaagctgaaa accgagaaag ctcctgtctg acggtgttgg ctacacaaac
       61 actgacaggt ccgtgaattg tgaggcagac gtgcacaaca gagggaacgc tcttctttac
      121 atgatttatg ggggaactta gtgaagggat ggataacaac caagcgctta ttagcaagtt
      181 atttgcttaa ttacatttac cttgtactga gactggcggt ttttgttcca gtaggtgact
      241 ccaatccttc ccctggcttt gaggatttct ctctgttcat ttgctggagt attgagttca
      301 attcactaat gacattagcc tttgggcctg agagaattgg gcttttcacc tccgtcatgt
      361 caccccatag cttagatgtc ctttggggga caactttagc catattgggc tgcgcgctga
      421 tcggaggcgg gggcggcgcg ggaggaggga tcacaaagct gtctacagtt tcttcgatga
      481 gcgcgtcctt gtaaagtgca ttgcttttgt tgattatggg cttcattttt ggctttggag
      541 gtactggggg tttgtccacc agaaatgttt gcccatctgc atagactgta caagtatcca
      601 cgttctcacc cccttccgag gataaggtag agatgctgga caccgttgag atagtgctgg
      661 ttgtctctaa gtgatggtca ctactacttc gactgtctac ctcctcaatc ccagagtcag
      721 tgacgttgtc aaagctgtca gggggtggca gaaaggaggc aggcaaacag tttgaaagac
      781 ccacttgctt tttactgtct aaggaatttg ttgcctggct gggggcaaac ggcgtggggg
      841 caggcgtgcc gttctttctt tgcttaatca agtctgttag ggccgaactg ggagccgcgc
      901 ggtcgtcggg gatatcaaag ctgttggcaa actctaaggg gggtggtagt ggctcggtga
      961 ataaaaactc ttcatcaata tcaactgatg ccaagggtgg cggagggatg cggaacggca
     1021 agatgacagg gtcgtcgacg gagctggccg ccacgatggt tttgcagggc gatgccgggg
     1081 gctc
//
LOCUS       KCLA01001010             259 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16341upu ultra-conserved element locus uce-5702,
            sequence.
ACCESSION   KCLA01001010
VERSION     KCLA01001010.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16341upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>259
                     /note="ultra-conserved element locus uce-5702"
BASE COUNT           89 a           51 c           40 g           79 t
ORIGIN      
        1 gcaaacagcc ccatgaagcc accgccttca tggagagctg aaacagccag gcagtatttt
       61 gtagttttta ttgatggcat ttatcccatg gtttaacatg ttaattatac tgtaataaac
      121 atggctttca tattaaactt ttccttatta tccaaagtca ccacagtcca tttcaggaaa
      181 tagaaaaata tatacttcat actttgtaca atactgggtt ttggtccaaa caaaaatgga
      241 tcagaaaagc caataaact
//
LOCUS       KCLA01001011             917 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16357upu ultra-conserved element locus uce-2447,
            sequence.
ACCESSION   KCLA01001011
VERSION     KCLA01001011.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16357upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>917
                     /note="ultra-conserved element locus uce-2447"
BASE COUNT          288 a          184 c          189 g          256 t
ORIGIN      
        1 gcatttgcag ctcagttcag gtacaggtcg ttcaagctgt agaacattcc agaattgggt
       61 ttaatggcca caatgaagtt gaagaggtgc ttattgcaga taagaagtga tagcgcagct
      121 ggaacaaccc attacaagag caacaggttc acctaaaggg aacatgtatt agatgcaagt
      181 acagggggaa gtccaacact agggaggcaa aaccatctcc ctaaaggccc ttctccattt
      241 ttatctgtgc aaaccccact aaccccactg tgagctgcac tctctgctag tcagatgggc
      301 tggaacatct gtataacaaa tgagaaggta gaatagttgt tgtgggtttg tgctcctttc
      361 cgaggcttgg tgttgataat ctccaaagca cacccctgat tctttaaatt aaacataaga
      421 atcttgtctc acagaacagc taggttatcc atgtgtaaga gcccaagcca agtaattaca
      481 catccgctca aaggattaga cacataagat ttctttaaat ttttaataaa actgcacagc
      541 tgttgtaggg aaaaaactct tttgttctag attttttaaa accattaagc tcaaagtgat
      601 tcacagttct gcttcaagaa aagtacttga aaactatttc tgttagaggt tttttcagta
      661 gatttaacat cactttaacc tcacggcaac agattagagt tgggaataac ctaaaggaga
      721 agtatttggt caggttttaa agaacattgc tctgttttta ccagaactcc tgcaaatgca
      781 ttttgcttag caccaaaacc agctaaagct cacattgctg gtgcacaaag aactctgtta
      841 cctttggttc tatcaagtta gcctgtggga caagcaataa gctgctgtct gaagggcact
      901 ggaataagag acatgac
//
LOCUS       KCLA01001012             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16388upu ultra-conserved element locus uce-7129,
            sequence.
ACCESSION   KCLA01001012
VERSION     KCLA01001012.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16388upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-7129"
BASE COUNT          269 a          217 c          172 g          290 t
ORIGIN      
        1 cattccatta accatgaaag attaggcata gtacaacttc atagtacttt aaaccatgca
       61 gactacagtc cctttgttgc tcttgtatcc tactcttcca cattttctct ggttcctgca
      121 aataaacaca ggcagtgcaa cccaccaaat tgggtagggt cacaacagta ggctcttttt
      181 cctaccctca ttgtcagccc actgggatgc tttcagccag gaaaatgact ttaagaagca
      241 aggtcaaact cagaaaaggc tctttcctcg cctttatttc atattctctt gcagagcaat
      301 catttattcc aactactctt ttaaacggct cctcaaagag ttaatttatt ataaaagacc
      361 acgaaagaaa aagcctgttt acactcaaat tatagagaag tctcttgtct ctatcaagtc
      421 tcaagtgtat ttgcacttaa aagcgcctcc cccccacaag tagaaacaat agtgcaggtg
      481 cgttgccctt cagtgtacga tgtatttatc ccgggaggca ggaagttggt ttcacacctg
      541 tttcttcttt ttatttgttc ttggcctggc taatttgccg aatgtcatga ttggtacagc
      601 tgaggctgtc agcgagaatt accactgcgt aacgagacgg cctaattctg gcagttcaga
      661 ttttacaacc atttgccttt tgttcttcct ttcagtagca gcctgcctcc tgtattgcac
      721 ataaacatca gcagtaacag aacatgtaag aataacacag gctgctttat tagatgactg
      781 cccttctcga tattgtgctg taaaggttgt aagcacaacc agggtattcc tgatgcagta
      841 aaaaagggtc ttcttaagga ctggcattaa tattcttcag cagcaactca tgacctattt
      901 tgttcagaaa tcaaggacta ctaaaaattg agagatattc tgctttaa
//
LOCUS       KCLA01001013             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16404upu ultra-conserved element locus uce-7308,
            sequence.
ACCESSION   KCLA01001013
VERSION     KCLA01001013.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16404upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-7308"
BASE COUNT          186 a          158 c          201 g          197 t
ORIGIN      
        1 ggaggagggg tctgggggtt ggggaggagg cggtcggctg gcagaatcag gggcacaaat
       61 atctgggttt atccgctgtg tggattatta acccttcaca cagcagtgct gagttcggag
      121 agcttgcagt cctctgtcag agagagcaaa tgtcaatctg atgctaaccc cagttgaaat
      181 gtccaggtaa actatgctgg agggggagga ataaatgagc aaacaaacag aaatcaccag
      241 atcctttctc tcttgcttgc tttttctgct cttatttctt tttccctcca tgtcaacacc
      301 aaacgagaca ggactgaaac gaatggggaa agcagcaatt agcaaattag gttagcagcg
      361 tgtagcagtg tgccacggct gccaggtgtg aggggctctg gcactgtatt tattaatggc
      421 tgtcaggaaa gtgacacttt gatgaatgaa gctgggtaat cggcaccctc cgacagtgag
      481 cacggagagg cctcaacacg ctaaactgca aaatcaaacc tttcttaacc cccgtacaaa
      541 aatgcgacgg cacaaacggc tgcgagacga gtttttccat caggacctgg tgcttggatt
      601 cttctctgat ggtttgtaac ttgttgggga ggaggtgttg ggtttgaagt ttcttccctt
      661 ttcttggaat ataggtcttg aggctttatt tgtgcaggta ccttaaaact ttgtagcctg
      721 ctctgcacat cccatcagca gt
//
LOCUS       KCLA01001014             959 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16420upu ultra-conserved element locus uce-2638,
            sequence.
ACCESSION   KCLA01001014
VERSION     KCLA01001014.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16420upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>959
                     /note="ultra-conserved element locus uce-2638"
BASE COUNT          256 a          204 c          235 g          264 t
ORIGIN      
        1 ttgtcccagg gaaacacttg gtgctgggaa gcacagagga cacagtgtaa aaccatcatc
       61 cttggcattt catcttccta ttggaatcca atccaatagg aaaccctgct cttggattga
      121 gagaagttga gcagacaggc aggacatgtt aatgtccctc aataacatct ctgtcgtaga
      181 ctcgttacct ctttatttac ccttcaagat atttgctccc tctttatggc acaatctgta
      241 tcgaggggag acgtaaactg ggcagggaaa tgccaaccaa atgagaaaat agaaagttaa
      301 tggtgaaact agagtgggct aaattaattt agtgattata tgaccatatc ccatcagtaa
      361 gacatgaatt attttgttta cagtcttcag gttgatgcct ggctctgctc cccttccctg
      421 ttttcaattt aaacggcagt gattgtaaag agaggagaaa ataaaccaaa tgttcccatt
      481 ccacttataa atttggtgtt tataatctcg tagccatcca tggaaaccat gcctgttagt
      541 cgagggcctc gtctccccga gctgagcgta attattgctg atacatctgg atgtttaact
      601 acctactaca gactcttgaa tcccttccag attgaaaaga tccattaata tgggagagga
      661 gaagagcgga gtcacagagg gaagaagaga ggggaggggt tctgtctgtt cttcagttct
      721 cagaggattt atgccttgct tagcaccgtg gggaggaaaa cgccgttacc tgagctcgtg
      781 tcgttcagcg ttaaggatgc agcgtgctcc tctccacgtg ggtttgcaag gggttcttca
      841 ggcacagcaa ggcacgcttg ctctagcttg gtgtcaggag gagatggaga taccctccca
      901 cagtggcatc atctcagctg ctctgatgca gggagatggt atggtttgat ccgagttgc
//
LOCUS       KCLA01001015             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16434upu ultra-conserved element locus uce-3366,
            sequence.
ACCESSION   KCLA01001015
VERSION     KCLA01001015.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-3366"
BASE COUNT          165 a          109 c          108 g          211 t
ORIGIN      
        1 ttttaaaaca gaattaaaat attttcagcc agttttatga gatccttaaa tatatgtatt
       61 tcagagggaa acaactgagg gattttagag gtcacatgct ttgtttgttg tatattcatc
      121 ctggatgaaa taaacctaat gtaacaccac cccaccccaa tataagcctg ttacacttga
      181 aagatttgtt cagaatgtcc agtgggaacc tggaaatcgt aataatttgt agtatcgatt
      241 gtgtgaagct atgcagctgg ggcctctagt gaatagacag gaatagacat tttattgatt
      301 aacttttaca gtcatatttt caggactctg ctgcaacata attttcactt cccagctttg
      361 tgctgctgca tcatgaaact tggattcttc tctcttaaca tttatccacc tgagggaaac
      421 agtatggact tgtctttttt aagctgtgct ctgcagaaat gcctaatgtt tggcgcagtg
      481 aattcttctc aatttcccct ctgctgtcac aataacataa atattgtgca gtaccttcta
      541 gtagtttgta cttccttcat gttttcattg ctatttttta aggggttaag gtt
//
LOCUS       KCLA01001016            1051 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16448upu ultra-conserved element locus uce-2013,
            sequence.
ACCESSION   KCLA01001016
VERSION     KCLA01001016.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16448upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1051
                     /note="ultra-conserved element locus uce-2013"
BASE COUNT          260 a          259 c          211 g          321 t
ORIGIN      
        1 cacacgtcat taccgtgcct cgtttactaa ggattttcct caatgaaaat aatggtggtg
       61 cagaaggaaa ggttgaacgg cttcagatgg gtttggcacc tacttttcat tgttcctttg
      121 gtcattaaca aaggtgcaca aacccctggg gcaagagcgt ggagctgcag cacagcaaag
      181 gtgatacttg tctaagtgaa ccctaaagaa taacacatct cactgcacta tccgctttcc
      241 catctgctcc aagctggatc gtaccctctt ccttgtggca tctttcactg caatgaagtt
      301 cctgactgaa gaaataaagt gactccatcc attcccagca gttaaggtta aagagatgca
      361 cttggttcta aatctctgct gctaacgctc tctcgacctt tgacttgcct tagcacaacg
      421 aagtttgatg ggcccacgcc aagccgtctt ctgtaaccca tgagttggtt aatatactcc
      481 catttctcat tcagacagac aacagaggca aagaaggcag cagggcaaca aatgctgtct
      541 ccggcaaatg ctgggtaata aattgctctt tcagtagtgc agaagacaga tttttctttc
      601 ttttgctcct ttcctctttt tgcacagaag ttgcccatgg aaagctcgct ttcccacctg
      661 gccccagctg actatgccca taaatttgcc tatgcaatgc ctgtttacgg gtcgctgctg
      721 gaacacggtg cgttttctaa gcactgggta gataatcatg gtaattgatg tttggagctg
      781 ctcgctccta ggagcatagg gtctctttct cccagtgagg ccctgctcca tgttatcagt
      841 ccagcccata attaaatatc actcttttac aatatgtttc aggctcctta atgagtctaa
      901 agcagaaata gtcacctctt tcccctttga gctttatttg cttgttatta aacaatgtta
      961 ttgagctgcc ttctttctct gtgttgccaa acctgcatca tttccgtttt ataattgcac
     1021 aattagagtc agtgctttgc tttcatacat c
//
LOCUS       KCLA01001017             244 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16479upu ultra-conserved element locus uce-7567,
            sequence.
ACCESSION   KCLA01001017
VERSION     KCLA01001017.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 244)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 244)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16479upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>244
                     /note="ultra-conserved element locus uce-7567"
BASE COUNT           79 a           58 c           47 g           60 t
ORIGIN      
        1 cctccccccc tctttcatta gctcactggc agggtggcac ttctgaacct cattactgca
       61 ggaggattta tgaagctgaa cccaatggca aagaaaaggc atctgtcaat aattgtaggg
      121 agctgcactc acagctttga aatctcatta agtatgcagt tatcaggcat aaagatcaaa
      181 aacattactc aactccgaca gaatcttatg gaggaacatt aattagcaac aggcctacag
      241 taca
//
LOCUS       KCLA01001018            1058 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16494upu ultra-conserved element locus uce-3135,
            sequence.
ACCESSION   KCLA01001018
VERSION     KCLA01001018.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1058)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16494upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1058
                     /note="ultra-conserved element locus uce-3135"
BASE COUNT          289 a          234 c          210 g          325 t
ORIGIN      
        1 ctgacagttc aactcaaaaa caaagcctca ctccttctac ctcttactag tattatggtt
       61 cagctacttt ggccttagca gcattccaca cggagctccc tgccagctgc cgtagcacat
      121 ctcattcact tctgcattgt gtcattgatc tcacggagag aacaggcaac ttggagaatt
      181 tcttttgctg ctacctgatc taccattatt cacctcttat cattttagca aagtggttac
      241 gctgctgtca gtgataatgg agaccatgca actaagaaaa ttggctgtaa tttatttatc
      301 agttgtttct acataccaca aaagaaacca tctactttat ggctgggtct aaggtatctg
      361 agagcccttg aagttcatgg ttttccggta ttctaagttc tacttatggc ttttcctgta
      421 tatgacatgc aacaccaccc ccgtggtctt caagaccgat ttcttctttg ctttctttag
      481 tcacaaatca ttctgaggca tcccttaagt gcatttgtat tgttaagtgc accgtcctga
      541 tttggtgtta attcaatttg agtgccttta atatcttgcg ggagtgaggc aatacatgag
      601 agctgtacct tgtaaaaaca ggttccaggt ccgcttgaga gcaaagcacc tttcccacag
      661 caatttacca aagctgctaa taaaattttc ataaggaaac ctttttagtc tgaccctatt
      721 gtgttattct accattaaga gtcagggaac tgagtctgta ttctggtgac agtttatcac
      781 gttctccatt attttagtat atagacagcc tgatgggtca cagcctatat cccattctct
      841 tacaatgtgg aaacagctct aagagacaga gcctggaggc ccaagaatgc cagttgcagc
      901 atgtgtgtgt caatataact gaattgaact ctagataaac cagtcacctc taaccttcaa
      961 atgatgggag atgggacatt ttagtgcatt tggggccaag caaagggagc agaaataaac
     1021 ttaggaacag tcagctctaa gcagtgtgtg ggagacac
//
LOCUS       KCLA01001019             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16510upu ultra-conserved element locus uce-560,
            sequence.
ACCESSION   KCLA01001019
VERSION     KCLA01001019.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16510upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-560"
BASE COUNT          290 a          212 c          211 g          279 t
ORIGIN      
        1 agcgacacaa ccttcagaag aagagatgtc acttgttggg gacccaggag atgcttctcc
       61 tctaggtccc ccagaacaaa gtttatcaaa tcatcttgaa aggcaagaaa cactgatccc
      121 ccagctctgc tccctgataa tccttccaga accttctaag gagcctcctc catgacacag
      181 ggttctccag caggacttgt tctcttcaag gactagttag ctacacaaac acaccatttg
      241 cttctgcatc tctttgaact accctcaaaa caccggcgta ataattggat acccttacct
      301 ctgctggcct gtgcagcgtg ggtcatacat gtaaacatcg aactcaaata acaaccccca
      361 aatttaattt atttctccct aaacaagttc ttttatcata aagcaataaa tttgtcttgg
      421 tgctagcaat ttgttgcggg tgacataaca ctgcaaattg attaatcgct actgtacacg
      481 acaaaatgag aaaagcaagg aattattatg aatagcgtcc atccgataca gtagggattc
      541 attattcaaa agtgttagct agtggttagc tatccccttg ttgcagatta cattcatttg
      601 cagaatccta catcatgctt acacaaatca acaaacatgc atttattaag acatggaatg
      661 aaagctatta aaaagtgaaa aatggctttt ttctttaata aaaatgaggt gagtttggtg
      721 tgagctgctt ggttcttttg atgggggatg cagctatgtg gcggaagaga aggggcttat
      781 tacgttctgg cagaatatac atgcagaagc taagtacatt aatattggtt gttagtgtct
      841 tacagggagc cctcatgctg caggctggag gatctggtgc agcagaagcg ttgggctgcg
      901 gtgatgaatg cagtcaaata ggctgccgtt gccttttcaa gtgcattttc agctttagca
      961 ctgcatctgt cccaatgcac aggtggaagg ga
//
LOCUS       KCLA01001020             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16526upu ultra-conserved element locus uce-235,
            sequence.
ACCESSION   KCLA01001020
VERSION     KCLA01001020.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16526upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-235"
BASE COUNT          194 a          108 c           83 g          151 t
ORIGIN      
        1 attggtaaac tctaacaaaa taaaactccc taaactgaaa tggtattcaa ctggtaatag
       61 aaaatgaaaa cgatcgaata aatgtaagaa ataaaaacta cgcttttaac aagaaaaaaa
      121 caagtaatat tctataatgt taagtaacta caataacatg tgaagtcacc tatactttct
      181 taacacgatt gaaattacat tggtatgggt tttaacccgt aatgtaataa tctaaggctt
      241 taatagatgt acagtacaat cagtaaaatc aacacgtcat tcttattcta taaagcatct
      301 ctctcaagca taaaaactcg cagtaaactt ggaagtatgg agagttctag aaccgaaccc
      361 gcgcttcttc caccccagct acgctaccag tgacctggcc cccacgtcag cactttgctg
      421 aacagagcaa aaatatcctt tactagctgc gacatccaaa ccacaaggag ggattccttt
      481 gggtgaatcc gttcggaaaa cttgaatgca catctattca tttttttgtt tgtttt
//
LOCUS       KCLA01001021             960 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16542upu ultra-conserved element locus uce-1371,
            sequence.
ACCESSION   KCLA01001021
VERSION     KCLA01001021.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16542upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>960
                     /note="ultra-conserved element locus uce-1371"
BASE COUNT          298 a          189 c          183 g          290 t
ORIGIN      
        1 tctgtgtacc aatttcttac caccagtgct ctcctccatt gtttccagag tccaagctac
       61 ctgaatgttt aagtgcttat ctatatgact ttagccttgt ctcgtgtgaa tgtctgccag
      121 gcaggaactg ggctgtcagc ttcatcccgt caaaaagcct ctcagtgcca tgagctgaag
      181 gcaggttcca attgttaagt cattctggct ggggctgaat ttaaagacag gctcctgtag
      241 ctagcggaag ttgctggagg caacagctca gcaaaaggca ttaaaatcat atgtctcata
      301 attactcttt tgactcaatt acccatttac tctttatttt tatgtccagt ggaacctgaa
      361 ggcagcaaat gctgcataag gggaacaaat cctgtataat agttcttgtt ttggtacatt
      421 cacttagtgg tgatttatta agggctgctg aataagcctg attaaaatgc ataaacagtt
      481 ctgaacagta aacaaccatg tctaaggatg aaaaaatggg acccacatgc tgtgcatgga
      541 aattgccctt aacaacatgg cctattgttg aacagatagg aagccaaagg ttgcttgtaa
      601 tcaaatttga agtttcccat cacttataaa agcaacactt ccttgtgtaa acgtttcaat
      661 ttgttgttgt taaaaactgc ttcctgactt aatccctaca ggaacgcagg atttctttga
      721 ttgtcaggta gaaagacaat ttcaaataaa gtaacttaga tttagacaaa gtaaaataaa
      781 tatgcttagc tgaagtgctg ccacagcaat aaaaactgga gtttcctagg attaatgaga
      841 aaaaatgact cattgcatca atttaatctc ctctgaaaat ttcctttgtt gctgcaatta
      901 aaattgcaca aaatagcaca gatatataga gcacagtacc ctcctaactt tgtatgacag
//
LOCUS       KCLA01001022             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16557upu ultra-conserved element locus uce-3541,
            sequence.
ACCESSION   KCLA01001022
VERSION     KCLA01001022.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16557upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-3541"
BASE COUNT          285 a          249 c          192 g          237 t
ORIGIN      
        1 tttccctgtt tttatctttc tccgggcatg tgccagtata aaatatgaga ttggatggaa
       61 tcacctctgc ctgggctcca gacacaagtc aagtaatgga ttcctgacat cttcttctca
      121 cccattttca tccctgtgtg gctgcccctg cccagccacg tatgaatgaa cagaagcgcc
      181 tttcatcccc cacttgcctg gcacttcaaa aggaactacg aaaatagcag caacaaaaat
      241 ccagccgcct gccaaaaggc ccgcacacgt cccattctca caggcatgca aaaggttgga
      301 gagctcagca aaatttttat gtacaggagc aggcccaagg aaaactcaca cgccataacc
      361 aattgtggac agaggatcat ctatcagcag acaaatgcag gaactccaga atgtctctcc
      421 tcaaatgaaa taatatatct ttgaaagcca atgcccgttt taggcctgag gcccatatat
      481 caagcctgag aggcttgtgg atacgctcca gggccattaa ccttccacct gtttcccctt
      541 gtccttcagg atgagaccct gcccttgatt ttactccctt cccctgttca tcttccaaca
      601 gagtgtaaat gtaaagcaga gggcctgcga aataattcaa aggcaatgga ccagggacat
      661 ggttacaaat ctctgccact ggcactgtga cttatgcagg cagtttgtca cacatgagcc
      721 aggtgacctc tgtgacataa cagagaaaaa tatcgctcaa gatcaaaaaa tgagattcag
      781 agcactctaa ctaacgctaa gcggtggcca agtgtttcct ctctttcaaa tagcactccc
      841 ggtggaagga acacgctcgt ggcaatctca ataaactctt tggaaatctt cttctaacct
      901 gaatgtcaaa aatttcccca gaaagggtaa ttaaattgac aaggagagat ataaaatgtc
      961 att
//
LOCUS       KCLA01001023             950 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16573upu ultra-conserved element locus uce-5593,
            sequence.
ACCESSION   KCLA01001023
VERSION     KCLA01001023.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16573upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>950
                     /note="ultra-conserved element locus uce-5593"
BASE COUNT          249 a          243 c          227 g          231 t
ORIGIN      
        1 ggtgatgctg ccagtaacct gccttcttag ggaaagaacg ttgggaactt cctgagcaga
       61 cacaggctgc agctcctcct gcttactgcg ggggaaatgg aaaacaagaa acaccaaggg
      121 tgggaattca ggctgtgctt tcagttcctc tttcttgttt gttgcttggt tcttctccac
      181 taaaagaaca aaaaagagac gacaacaaaa cccactgctg cacctggttt tccacgtaaa
      241 agtttgcttg cacttcagct cctggcaaca ctgcatccca gaaaacactg tacactctct
      301 ctttaagaaa gcctgctccc tgcccagctg ttgacttgcc tgaaggtgag acctctgctt
      361 aaattcatgg ctccagctgt caaaagcaaa gaaaagcagc ttttccttgg cggctctctg
      421 ctttgggtag aatttgacat gttcctcagt cagcagaatt taatcagcat cgagtgccca
      481 cagccgctca gctccaccag cactgggctg gggagccagg agaaggggag agtcggtggt
      541 gcagaggcac agacaggcac aatcactgct tctgtaggaa atccaaggct tgtcactgtc
      601 tagggagagt ttcattatac cctttgactc tagaattgct gttatcaccc agtaacttta
      661 cccggctcag gctctgctct atccctctga gcagccgaga gcaggacgtg gtgtgagtta
      721 ttggcagcag acaatgacac tgatttccaa aggaaagcca gtgaaatgga ttcagggatg
      781 tggttcccca gacttgaaca aagaaattct gccaaggtga tgactccaga gattaccatg
      841 gcctggcttc ctttatccta gggaagagtg tgccttcagt tattgtcaca tagatgccga
      901 taaaccaact gacccagctc acctagcaaa actgtcaggc caagtcccca
//
LOCUS       KCLA01001024             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16589upu ultra-conserved element locus uce-3476,
            sequence.
ACCESSION   KCLA01001024
VERSION     KCLA01001024.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16589upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3476"
BASE COUNT          202 a          136 c          123 g          203 t
ORIGIN      
        1 aagactggct tgtcttccct gggttttctt aagaggctgt taccgtatct aaacataata
       61 catttaagaa agtttaaaca agcacaagtg actagttccc agtggtaatg ggacatctta
      121 ctgatgctgc aatttttttc tgcctttcct ttttactttt tccactcctt acacttgcag
      181 tctctactgt tttacagcaa aaactgtttg taaagcaaga attgtgctga tcgcatcaaa
      241 actcattaat ataacttgtt ttccattatt agcaccatct gagcctgttg aaagccttaa
      301 ccagggcttt aatttttcca cagagagctt taaattaatt agtggtttac atgctaacaa
      361 agaatctgat acattcataa atcaatctga tgcagaagga ttaccagagg gtggaaacct
      421 attcagtggg gacctcacat tcacttaaca tggtgggttt ttaacaaaag ggtgcaggtg
      481 tggaatagac gggtaccagg aagagcccat gataatcagt ttgcatcact taaagacgca
      541 gcaggacaca tggtaaatca gagccttggg cccaccctaa gtgaaaccca tgtagatata
      601 aaaggcaata tcatcccact ttaaccttca cagctaaatt gccatagtgc tacaatttct
      661 tttg
//
LOCUS       KCLA01001025             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16605upu ultra-conserved element locus uce-648,
            sequence.
ACCESSION   KCLA01001025
VERSION     KCLA01001025.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16605upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-648"
BASE COUNT          259 a          144 c          150 g          239 t
ORIGIN      
        1 caaacagagt ccattaaggg atctaaatgt gacttaccac atgtgttaat tggtggggag
       61 aaaaaaggaa aacacaacct ctgaatgtgg acatttatgt attcccatta ttcagacctc
      121 cttgatgcca caatctccca cttctatagt ttataaatgt ttgatttaaa atatagccat
      181 tttatcattt gtaccacatt tacctcatct taccactgtt ctgactggat gagaagctaa
      241 tgtagcctac actgtctggt caattattgc acggacacca gggaccaatt aatgccatcc
      301 ataaaagcct gaatcattct gtcaattaac tagaactaac tatgtcatca gatatattac
      361 tggtgagcaa gtctatttgg ttgcaatatg tcttgaagga gagcagtatc aaatgaatca
      421 caattgactt ggacaactgc tagcataatt tcagaagatg aaaagacaaa tgtggtagtt
      481 attagtggtc ccctgaggaa ttacggccaa gcaattgtaa tgtgctaaga ctgtactagc
      541 aggtgcccac agcacaaatc aggcagaggg ttaaatcaat attttcaatt tcttaggatc
      601 aatccagtgt ttgaacaaga tggaaacttg ttagcaattg gcagaatgtg taaatgaaaa
      661 gtcaaactcc ttattatttg ttaaaaagga atcagtgctc tgcatcatgc ccttggcaca
      721 aggtaatgct ttcatgatcc agttgtttgg gcattcagta aaaatctagc agttcttaaa
      781 ttttaataga gt
//
LOCUS       KCLA01001026             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16621upu ultra-conserved element locus uce-337,
            sequence.
ACCESSION   KCLA01001026
VERSION     KCLA01001026.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16621upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-337"
BASE COUNT          233 a          166 c          151 g          223 t
ORIGIN      
        1 gccctgtcct tgctctgcaa aaacaattct ggtttcttcc tcagccatgc taacccaccg
       61 ctggtttgct gactctagca cttcagaagc tgtagagtaa atcagggctg ctgaatgtct
      121 gtcttcacta gaacagctca aggagtaaca aagcatcgag aattccagtt catttctctt
      181 ttttgttaaa tagaaaacaa aaatcactct gcgctggtga catctcaatc cttctgactg
      241 tgcggctcag cctagccagg attttgaatt ctgaattctg cactagtact tttctgttaa
      301 tatggactta ttacccactt gccacttagt ttatcagtca gcgcttaaat ccagtcctat
      361 cagtgaagta aatgcctaca cattatcact ctgcagcagg ctgccaacag agacagtctt
      421 gtcctagtca ttaacaagca caatgtatgc agaacaccag aggggaatta aacccacaaa
      481 aaatacctca gggtggtatt tttaatatga gaatttaatt tgtaatttca cagattaaga
      541 attttggctg cattaatcct tttatcagct cacagcaggt tatttgcaga agcataacca
      601 taaggcgata gtcattggca ggaacacgcc tttgcagaac gttaaacatc aggagcggtg
      661 aaaccttttg aaggggggag aataaagatg aaaaatcagt cgatttgaaa gcaaggttct
      721 tcgaaatgcc tccagacaaa ttttgagttg cagaaagact atttctgtgt cta
//
LOCUS       KCLA01001027            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16637upu ultra-conserved element locus uce-2042,
            sequence.
ACCESSION   KCLA01001027
VERSION     KCLA01001027.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16637upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-2042"
BASE COUNT          320 a          158 c          182 g          355 t
ORIGIN      
        1 tgtgctctca taactctaca cagggttggg attgaaattc tttgtacgtt gtttgttgat
       61 atttcccagc ttccacataa agagcaaacc tctttttttc cttctgaaac taattcctga
      121 ttatatgtcc ttaatacttg gaggttgctg tcagcactgt tggtgtactg catatgttgt
      181 tatttttttg ttaattttta tgttgccatt gttactactg tcttaggcta cagattcaga
      241 atattaaaca agtacaattg ttttaactac tgtgaaattg acagatgaag ctaaaaacca
      301 aaagcacctt tcatgggatt ttaaacacta ttttcctcca tatgccatcc caattattat
      361 ttagatatta cattcctaat ttactgttaa ggttgattag aattcaagcc tctcaaaagc
      421 atgcaccaaa ggtcttgggc tgtggaaaac atttttataa aataatccat taatgcagag
      481 gagtgcaact aaattagtta gcaatttgct gagcatgaat taatgaacag agcttctccc
      541 agctcccaga gttgtaattt tcataataac ctcagacctt tatttggcag gttgtttagt
      601 tttttcgttt gaaggttttc attagtctaa tgaggactgt gcaagggcga gcagtcagca
      661 caatttacat ggggaagcta tcataataaa tgaagcaatt tgaataacac gcaagggttt
      721 atgcaacaag ataagaagag attgtagagt gagatttaga ggtaaccaat acattagacc
      781 aactaataac tgaagtaatc ccaataaaag gcttaagtga aaggaatgaa attaatgata
      841 tatacaaaac tgtaatgata tgatacatga ttcattagat taataaaata agtgttcaat
      901 tgtttttagt gcttttagtc caagctttgt ttgtgtcagg cactttaatt aggattgttc
      961 actggatcac tttgcttagt taagttttag accatgactg cgttttttaa tgata
//
LOCUS       KCLA01001028             349 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16653upu ultra-conserved element locus uce-3742,
            sequence.
ACCESSION   KCLA01001028
VERSION     KCLA01001028.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16653upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>349
                     /note="ultra-conserved element locus uce-3742"
BASE COUNT           84 a           74 c          106 g           85 t
ORIGIN      
        1 atttaatgcc ataagggagc aaggtgctgg gagaatactc tgtctcatag gagttcatgt
       61 ccagtttgtt ggcactgggt tgctgtacgg gcgcaacaaa ccaccgctga ggagggctgg
      121 ccacctcttc attctgctgc ggggagagca agccattcgt ctgagggacg gttctctcac
      181 cattgtaaaa cctggccggg ggcaggttgt tgacaaactg ttcttggaag aacggttgca
      241 tgctgtatcg ggcaccaggg acaatctggt gggatctagg agaatccgcg ggagatggag
      301 ttaatctgtc attttctgaa gctgtgtaca tgctacaaca caaaagaga
//
LOCUS       KCLA01001029             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16669upu ultra-conserved element locus uce-6468,
            sequence.
ACCESSION   KCLA01001029
VERSION     KCLA01001029.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16669upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-6468"
BASE COUNT          277 a          201 c          171 g          267 t
ORIGIN      
        1 caacaaggct gaatgggcac agagcgcacc agccactaag aggcaacgga acagctcatt
       61 tctcctcatt cattttgttg gcagaattaa accacgagcg catcattaac tgatttgaac
      121 attgggatta atgagagtca ggtttccctt ccctccaatc acagggtcat ggaaggtggg
      181 gagaataacc agcaattgca tctttgagga actgcattca caattgtgct ccaggcccag
      241 tgcccaggac tgctgctcat cacaattgcc gacagacaca catacatatt cagcgaaagt
      301 gttcaaactt gcacatttgt attcatttta ctttgacttg actggaatca taaaaggaat
      361 gtgtaaacga ggagagcctg ttgctgaaat gaagttgaat tttttcccca cagaaacttg
      421 ggttcgtgac agctttttgt tgggcaggac attagccttt tgtaatttat tgcttttaga
      481 ttaaatctgg ggaaactcaa tattgcagtt gaatgattag agcaataccc cttggagtaa
      541 taaattttct ttggtgctgt gcatctccag atcatgtttc ccttctaatt acatttacat
      601 aaatgatatt ctgcaaaatt aaattaacat tcaaactgtt acactggcaa ggagagacaa
      661 agttacaaac ttacagccct aaaaaaacct gaaatgacac ctcattcttt ccacaaagtg
      721 aatcacagcc atcccccaaa gcatctcgca cacaactgat tattctagtt ggttaatcac
      781 caacctagac gccttgcttc tcccttcaca agtttatagt gtgaggtcct gctttccaca
      841 ggatctcatt aaatggaagc aattcttttc aatccaaatt tggttagtca aatgcttcat
      901 tcagacctag gtatga
//
LOCUS       KCLA01001030             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16683upu ultra-conserved element locus uce-6407,
            sequence.
ACCESSION   KCLA01001030
VERSION     KCLA01001030.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16683upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-6407"
BASE COUNT          115 a           57 c           64 g          128 t
ORIGIN      
        1 aagtctctga aattatttgc catcaattgt gaaggcaata acaagctttg gtagtttttc
       61 acaccctctg tgttaagtgc tttcagagtg acagcgtaaa ctgtgttgga gaactccaag
      121 gaagtaaaac tgattaaaat gttcatgctt caatggtgct gatggaatag ttcatttgga
      181 ctttctctac ctcctgcagc tcaagctgaa atattaaaat tcagtggatt taaatctctc
      241 tcccttggct cagaaaaaaa aattactgtt taatagtgtt taaactcgta attcattggt
      301 ttggagcagt actattaaat ctatttaaat attacttgta ttactaagga aattatttaa
      361 atgt
//
LOCUS       KCLA01001031             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16699upu ultra-conserved element locus uce-1304,
            sequence.
ACCESSION   KCLA01001031
VERSION     KCLA01001031.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16699upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-1304"
BASE COUNT          111 a          104 c          150 g           89 t
ORIGIN      
        1 tgggttgggg ggaagagaga taatcaagtc tttgcagact gacagcctaa tggacactct
       61 ggcagagagc ggttagaaag aagtagtaaa tgggcccgcg ctgatgcagg gcagcgggct
      121 cggtcaggga tcaagacacg cggcggcgta tcggataaca tctaattggc aggtcacatc
      181 caaacgagtg cagtcgcgcg gcatccgtga ggctctggcc ggttctaaag ccacttgtaa
      241 acaattcagc cgccgaacac ggcaatgcta tgttgatccg gcgcgtaatg aggtgttccc
      301 ggaatcaata aaccagtcat gaagagcagg gagcagggtc agcgcctgcc tttttgatga
      361 cctttcctgg ctgctaagga catcgtgcgc tctgaagagg acttttctcc tatcgcagga
      421 ggcgccgagc cggggttggg gaggagaggg gaag
//
LOCUS       KCLA01001032            1146 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16715upu ultra-conserved element locus uce-3198,
            sequence.
ACCESSION   KCLA01001032
VERSION     KCLA01001032.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16715upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1146
                     /note="ultra-conserved element locus uce-3198"
BASE COUNT          309 a          233 c          227 g          377 t
ORIGIN      
        1 taatgtcctg agatttggtt tggaatgtct tttttagcac atatctttat tcagatatta
       61 tttctctact ccttgtttta aaaacccggc tttttacatt cggaagccat tgccacgatc
      121 tatctgatct agacagctgt gctgagacag gatttggaaa taaaagtaaa aaaagaggaa
      181 gcttttttgt cacacttgta ttcattttag tggttatcac tgtaacagtt aacaaaagac
      241 acaaaggcat ccatacccaa aacacagcat atgaagactg aatttattct ttttcaaatg
      301 gcacatacat tgaaatagct tctacttttc ccaattggca gggccattgt tgtggctaat
      361 gtagatattt ttgaaaacaa tgatacgttt ccaatagtat ctttcacaat tttttttcaa
      421 tgagcaataa aggaggttga ggtgggatgt gttttatccc accacattat atcattcctc
      481 tttttcctct ttgttggatg gcaatcagga accctcatgc caagcttggg aagcaacagc
      541 atctggctcc ttggcagatt ctgcaggcgg tcttgttgcc agcctttaag ctgtgtctga
      601 gtctgctgca tggtttggct gcagatgggc tctctgggtt gccttgtgct tgtgggtgcc
      661 agttctggct tacctttgat tttgaggact ttactcattt ttattcattt gtgaataagg
      721 acccatccaa atgcttcgtg aaaccagcat cagagtgcac caatatttaa catgagaagg
      781 gaaggaggct gcttcccttc cctctcccct cctcaggatg aaacatgata atagcatctg
      841 caaatggatc tggatctatc actatttcca ttataaatca gaagcttaga gcttagccat
      901 gaatattcct cccagagcga aacgcgatgc tgctgctgat atccaaatga ttctaaaggt
      961 tttttcagat cacctaggca ttcacaccac gactttccct tctttcaagg aggaccatgt
     1021 tgaaatccag cattgagcat ctgtccaaaa acatctgtat gacaatagag tgtttcttga
     1081 ttatgtttct ggatgctgat gttcagtaga gttttggagt cacttataag aacagtgcct
     1141 agaatt
//
LOCUS       KCLA01001033            1025 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16731upu ultra-conserved element locus uce-3565,
            sequence.
ACCESSION   KCLA01001033
VERSION     KCLA01001033.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16731upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1025
                     /note="ultra-conserved element locus uce-3565"
BASE COUNT          323 a          211 c          182 g          309 t
ORIGIN      
        1 ttcgggaagt tttatactgg tatgtaattg ctaagaaaac cacctagtgt cataaatgtc
       61 catagcatta agggagaaga gccttgcagt accaaaccca ggtagtacac acaacaaata
      121 tcatttctac attccaccta cagttaagct aaaatagcta atctatcaac ctgttgtact
      181 tgcactggcc acaggtaact tgctcagtaa taaacataca ctgtctcaaa gagcagagat
      241 taaataatga caaaaattga tttctataca aggaagcccc agtctaattt acaaggtgct
      301 gagacaaaac ttactgcttc tacagggaga ctgaactctg tcaggcagga tgctggggaa
      361 attgtatgcg atttgattat aaaaccaagg cagtggagac ctgccaggtc aaccatctgt
      421 caaaaccaaa agtgcactgc ctttccacta ttttaggagc tgtacaaaca ccagtgacaa
      481 gggaacaaaa tggaacctgt gttgtacaaa caggaacttt ttgaagtatt tctactttga
      541 atttcttccg tgtttgcaca gttgggaatt tttttgccct ttctttgatt gtactgacat
      601 ttgcttcctg tgaagtgcac aaaagcttta ctgaccttag gttgattgct taaagcattt
      661 catcacctct tctttttatg attctgataa tactaataag ctcacatgtg taagacggtc
      721 tttgcaatct tctgtgaacc acagtaatag acagcatgat cctgtcccac gtcccttcac
      781 gtgtaatgca aactgtatca aaactgttac actcatcaga caagtttata ctgcgatagc
      841 attgtggcct gacacagcaa atacatgaat tccagagaac aatcacttct caaagatttt
      901 tatggtcaca aactaaatta tcttgctaaa actgcatttg agatttcaaa atgatttgtg
      961 agtgtctctt aatgatctgc tgaaacattt gttagtgtgt ttatagcaaa cctctcacac
     1021 tcact
//
LOCUS       KCLA01001034             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16745upu ultra-conserved element locus uce-1191,
            sequence.
ACCESSION   KCLA01001034
VERSION     KCLA01001034.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16745upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-1191"
BASE COUNT          220 a          139 c          132 g          209 t
ORIGIN      
        1 cccggctcgt gatgtcctcc cctataaaaa cagacgccgc gtatgtcttt ttcaagactc
       61 acaacacgtg ctgcattctg ctcttttaaa aataacatct gggaaactga gaagcttctt
      121 ttgaaggatt acgttacagc tttgattttt atttataaaa cataaaggac taatatatat
      181 cagttaggac attttgcttc caaagtgcat tgtagcaaaa taattggaag gcagttgtgg
      241 tgtgaaatat atgacagctt tacaggacat aaaaagcagc tttttctttg taatagtgta
      301 attgccttaa accccacaat cataattgtt atcaaaaaat aatcccaagg aaaggctaat
      361 ataaggtgag cagactatta taagagctct aatacactca attccttgaa cggcaaatgc
      421 agcccctcaa tctcccagtg cttttagtgt cagtcagaga gcactcagtc atttctgtgc
      481 atcaagcctg cagtattgat ttttccactg actgaaacag ccatataagc ataaattttg
      541 catgaggctt tcactttgta gactctcctt tggtcagatg acacatgatg tgaacatgaa
      601 gactgtataa taacaatgca tggtcaacct gcaggcatta aagcatggtc tctcacagct
      661 ttgaaggaca aaagctggaa tggtgcatct ctggtgtgat
//
LOCUS       KCLA01001035             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16761upu ultra-conserved element locus uce-3104,
            sequence.
ACCESSION   KCLA01001035
VERSION     KCLA01001035.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16761upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-3104"
BASE COUNT          244 a          239 c          191 g          226 t
ORIGIN      
        1 cctcttggcc cccagagcac atcgctggag agccttgtta gttgtcaaca actgcaccgc
       61 tcctcaacgg tttaaattct ggtaacaagt ctcacacggc caccgtagca tcccagcgca
      121 ttaattagtt ctccagaccc cgagccataa aaatatggcc attcagggcc ccgggctgat
      181 ttatttacac ttgatgtgta acttggccag ctctgcattc agcgccttcg cacaatggga
      241 aatctattgt cactcaggtt aacaaaagtc ttttctttgc cacctcacta caatggccct
      301 gcaaatgaac gtcgcctgaa taaaacccta accacatttt cactcccatt aaccacagta
      361 gggtagcaca caatttgcct ggctcctgct tagaccactg tgcaccattt tactagcagc
      421 agtttgatgg gttttatggc aggtgatata tggagtggga gtttcgggag tcgtaaacag
      481 aagccacagc ggatcacaat gtggtttagg gatataatga ctgcgttgta aagcaaagga
      541 tgacaacgct gcaccaggct ggaggtaggg aaccaacaga ccaaacagct cgacatcatt
      601 caaacggagc atcctaggtg cgtgctggcc ttcctgtatc tttcattaat tacccctgat
      661 gaatgtgaat aagaactact aaaactgaaa taaatctgca gcctggagga aaattataga
      721 ttatctgctt gtgtttatcg gaaggagctc ctagccctgt atcactggtt cttaactagc
      781 ctgctccagc tagccatcgc ctttgctcag agacctgccc tcagctactg caaaatccag
      841 gctgaatgtc acatggaaca caaggcagcc acccacccca cctctctggt cataattgca
//
LOCUS       KCLA01001036             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16791upu ultra-conserved element locus uce-3416,
            sequence.
ACCESSION   KCLA01001036
VERSION     KCLA01001036.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16791upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-3416"
BASE COUNT          329 a          156 c          154 g          288 t
ORIGIN      
        1 acagtacccg atcaatgcaa cacaaactga tttccataag aaattccagc ttcatcatgc
       61 aacctccatg ttaatttttt aaaaaaagtc ctcgattttg aaattaagtt gaaagtatag
      121 tgtcagaaca aagtgaaaga ggtatcatta gccttcaaat gtgacaaata agaaagacac
      181 aaacaagtgt caggataatt aaaaaggcat tgttcatgtt ttagaggaaa aaaatgaatt
      241 gcacgagaaa tattaagcta acaaagaaag agcaaatatg agtagaaaaa atgacagtta
      301 tctgcaaaat tcataaatgt gtcttttgta taaccgtaat gatcatattt tatgctgtca
      361 ttttacattt aattgctcac cctggtactt tacttcatag aagccatcag taccccacag
      421 agccagatgc tgaattgcaa aaaaacatac tgtgaccaca gacttatagg aaagtaactt
      481 tgctgagctg tggtgtatga caagttaatt tttgcaatta tactttttcc aagaataaat
      541 gaaactgcag gtcattacta ttctatatca ttaaaaagag gcagaaaatg ttcttgatca
      601 taaaggcctc aaactcattt tatcattact ctgacatatg aaagcaactt ttcaagctgc
      661 ttttcctcaa tgtgacttaa tgaagtaagg accacctcag ctgaaatata taaacatctt
      721 gatacgttaa gaagcacata accagggaat attgttgtta ttatgcagtg ctaagccatc
      781 aaacattctc tggactgtgc ttactcacag ctctgctgtt atatactata tgtaagagta
      841 ctgaagagat ttggttgctc agttgtcatc tctgttgttg tcagcattca cttacctgtg
      901 agatgttaaa tgttagatat tttttaa
//
LOCUS       KCLA01001037             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16807upu ultra-conserved element locus uce-408,
            sequence.
ACCESSION   KCLA01001037
VERSION     KCLA01001037.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16807upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-408"
BASE COUNT          270 a          151 c          218 g          284 t
ORIGIN      
        1 ttgtgcttag tgcttggcgc aaccaaatga agaaagcgcc tgatccctgc taaccagaag
       61 ggacttgggt agctcagctg ttaatattca tggcagtgct gaccagtggg gattgagttt
      121 atggaactgt ctggaatcag agtgcttttg tttttcaatt ttttttatga agaaaatgga
      181 gctttaattt tggttctatg taaatgcatc ctgttgagct tcatgggaga gtttttatta
      241 tctttcacta gtaagagtta agaagctttc aaaatattaa ccagtcactg aaggttcttt
      301 gaagaaaaat atgactgctc gtgtaaacaa ttaatggttg ttaagcatgg cagtgtatat
      361 tatgacaaac aacacatgct acattatgcc agctggtgta atgatgtgat aatgtctgac
      421 tcattaactc tggcacacag tttacgatgc ccttctatga caggattaat tgattcacac
      481 atacattaaa acaaaaataa ctaaactgaa attcagctgg aagcctggct tctcatttgt
      541 catcagcccc attgatggtt aagaccagtt tgatcccagt gcagagcagg tcgaggtttg
      601 tccattgacc tctgtccttg ctaactagat gagtgtcttg ggagggagaa agttacgtga
      661 gctgcaagtt aactgagggg tccctacaat ggcctttgtg cttccatgtc tgttggaaaa
      721 aatagagagg ttggaagctg aaaatacaaa acaaccccga agtaattctt gctggaggaa
      781 gtctgtgttt gctagcaaga gctagttaaa tctatttgta ttgaaggaca ggggaggttt
      841 agtttggata ataaaaaact ttttcactga aggagtggtc cagtattgac tgttcaggta
      901 gtcaatgtag aaacaggtgg atg
//
LOCUS       KCLA01001038             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16822upu ultra-conserved element locus uce-2471,
            sequence.
ACCESSION   KCLA01001038
VERSION     KCLA01001038.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16822upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-2471"
BASE COUNT          256 a          158 c          179 g          257 t
ORIGIN      
        1 aacctaatag ctgtttttat ccttctgctt aactgcaata acatcaccta tggatgtttt
       61 cttccagcaa attaggtttc agttaatgag acattacatt aatttacatg aaactgttaa
      121 cgagctattt ttaactcctg ggtacctttt gagatcttct gtttggatta aacacttgtg
      181 gcactcattg aaatacatga taaacagcac ctggctattt ccagaggcta agtggccata
      241 atctgtgcaa cgtctgtacc gcagctgcca agaggcgaca gtttgacaca acatctcatt
      301 tgctgtgatg ttcaggtttt gagtgatgtt caaggagatg gaagtgctgg ctctgaacat
      361 aacccgacgt gtgctggtct tctgtctgtt aacttactaa tgaacgggat tgagtaaagt
      421 aatgaagagt ttacagacag ccccaggaaa ctaatttcca attttgcaac cagcaggctt
      481 taacctcact gcatcttttg ccaattttgt cttcaaggag actaggatag taaatgccat
      541 ttctgctccg tgaatcagac agacttcact aatccccgaa tacacagctg ctaatgaatg
      601 tctcttcttc agatctagtt tatttccatc tgcagttgta aaaaatagtc tgaaaaagat
      661 gattgctgaa agaaatgaaa ttataatcgc tgaaaatcag aggacttgtg gcgaaaaggg
      721 aattttaatc ttcagtctga gcagggatga attgtgaaga gaagtgagaa acacagacgg
      781 ttacttttgg ggagaaaaaa aaatcagtgt gaagaccttt gtccattatg tctgtgtgca
      841 gctggaagga
//
LOCUS       KCLA01001039             942 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16837upu ultra-conserved element locus uce-1919,
            sequence.
ACCESSION   KCLA01001039
VERSION     KCLA01001039.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16837upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>942
                     /note="ultra-conserved element locus uce-1919"
BASE COUNT          310 a          176 c          155 g          301 t
ORIGIN      
        1 aatcaagcca cacagcttga ataaaagaaa gtagagtgca agtgaaagag tcgagtgtat
       61 ctggggaagc agtgagtaaa aaaaatagtt ttattttaat atgattcttt ttcagcctat
      121 taagttctcc agtgccagaa tgaagtctgc taaaagttag taaataaagg ctttcaggag
      181 agctttatta aatcactcat gacttatcaa gttaaaactc ccactcagct atcttaataa
      241 aactttcaga gaatatattt aattttcctg gaaatcagaa gccaattact aactacatga
      301 gttactgtcg gctacgcaac cgatgagcct tctgtaaata gaatatttac caacaacttg
      361 aattagttct ctaaagtttc ggtttctgaa ggtcaaacaa ctatgtaagc gcttaataaa
      421 gaagcaaaga agtacctcta aatatctcca agctctgatg ggcttacagt ctgctcctta
      481 ggtgaggtat tagcaaagct tatttatttt catttccaag gcttttattt gctcattccc
      541 ttgtggtaaa gctgatttcc atgatgattc ccttcttaat tttaataccc tttttactca
      601 tcatatagac ataagaattt tccataaaat aatgaaaccc ttccaaagga aatgaagaca
      661 accaggagag gaaagtaaac tacagcttac ttctcttttt tcttctcatc aattaattga
      721 tccgctgtca tccgcctata tgaaagatat tttttaatga aaggaaaata aggttaatta
      781 acataaaacc cctcactcct cgagatgttg aattttgtat tttatccatg ctgccttaag
      841 tgccttgatt tcccagtaat gacctagttc tcctaatgag taacattaac ccctggctgt
      901 agctgtccag gacttaattg tcaactggag ctgaaatagg ag
//
LOCUS       KCLA01001040             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16852upu ultra-conserved element locus uce-7704,
            sequence.
ACCESSION   KCLA01001040
VERSION     KCLA01001040.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16852upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-7704"
BASE COUNT          118 a           69 c           74 g          102 t
ORIGIN      
        1 agtggatgtt atctaaactt ccagagaatc acagctgaca gtgctgctat ttctaggcca
       61 gagaatcact ctttgaacaa aacgcaatcg ctgtgtcttt tcaacctgcg cttcagcaga
      121 gtgaaacagc aggattcccg tcctgtataa taactgtcag aaacaatctc tgctctgtaa
      181 gtgaggtgaa gcaaaatgtc aaaatatttg aatacatttc attgaggata tcttctttta
      241 aattagtgaa ggctagagaa agagaatcct attctctcac ataataaata tgcatggaac
      301 agtggggcca agtgaattct aataaagctg ggtccatgct cgttaatatg ttagagagcc
      361 aca
//
LOCUS       KCLA01001041             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16868upu ultra-conserved element locus uce-2510,
            sequence.
ACCESSION   KCLA01001041
VERSION     KCLA01001041.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16868upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-2510"
BASE COUNT          128 a           70 c           68 g          122 t
ORIGIN      
        1 aaaaaagaaa gaaatcttca aatgaagtgt tttttgatgt gtagaaacct gttttctttc
       61 ccaaggtcta tattccattc ctgcagaaac tttaaatttc tttgaaagta tgttcaaaat
      121 taggtgaagg gtaaaattat gaatttccca cttggaagaa agtggcttaa attctatcca
      181 attatttgct atggcaacca gctaaacaca aaagggctgg aatggatgta gagtactgcc
      241 tctataatca tcactgtatg tccttcaaat catggatatg cagcaccgct atcccaatct
      301 acttcagggc cataagccta catggtaatt atatgctttg gaacactcca cttaagtgca
      361 tcaataatat agtgagtgaa catgttct
//
LOCUS       KCLA01001042             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16883upu ultra-conserved element locus uce-7831,
            sequence.
ACCESSION   KCLA01001042
VERSION     KCLA01001042.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16883upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-7831"
BASE COUNT          221 a          188 c          172 g          295 t
ORIGIN      
        1 ttttttcttt cctgcttttg tcttgtttta tccctttatt tttttcccct gaagtgcttt
       61 tggattgcat ctttgcatat gaaatttcag cctaaagcta attgttactg ttgatgaatt
      121 ataaactgct tagaagtagg cttataaaat agattttggc acatgcttga gtacagtagc
      181 acaaaccttc ttccccggta ccaaaataaa ccattttttc tccttaaata agttccatta
      241 agttgtccac agctttcaaa tcctcatgca tttctttcat gattcccctg tggagttatc
      301 cttgttgttt tgaaaaggat agtcacaagt ctgggcctgt acttccaagt tctgctcttt
      361 gttgcctaag gagtatacaa aggtttagat tgcatctttt caatgcatta tggcactgca
      421 gcctaaagcc aatacttgtt ttttaactgg caacctgcct gtacgaatgg aggaagcaga
      481 ttgcctcttt gctgaacact tagacaaggt actgatttaa caacagtgga caagcagctg
      541 ggagctgggc tgtcagcctg tcacacactg acaaatctgt tgttcatatt caggcaggat
      601 gttccagtta gattgccatc agtatcatcc atctaccaga ggcatgcaag gcgaaccggc
      661 atttgctgca tacccatgga tgaaatactg gtgatacagc tttctggggg aatctcaaaa
      721 aaagagctaa tttgctcccc ttcttttttt ttgtggtctc ttgcaataac tgtgagtagg
      781 cagcagatgc atttgggccc cctctttgct ccctcatttg gtacgctgga attacacatg
      841 caaatgtttg aaggacacct ctgaatggag tcttac
//
LOCUS       KCLA01001043             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16899upu ultra-conserved element locus uce-6613,
            sequence.
ACCESSION   KCLA01001043
VERSION     KCLA01001043.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16899upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-6613"
BASE COUNT          150 a          106 c          108 g          150 t
ORIGIN      
        1 aactatttaa aagtaggatc ttaattagat gtatttaaga ttagtaaata cgtcagcgtt
       61 ctgaacagtc ggtaccatcc cgtggataga cctgttagcc caaatgcaag cgagattcac
      121 aggggccaaa caccgtaata accccaacat gatatttttg aagaggaata gtgggtggag
      181 ctgatttccc tggtgtgaga gtcaagtgga ggttttaatt gactccacca ggagctggat
      241 caggcccgtg gggtgtttgg tgctcagtta caagttagtg ctctctctaa tcaccttgtt
      301 ctctaaaggc aatagatact aaacaggaac catctggtaa cgcattctgt acctcttaat
      361 tacaacgttt tgagtggcac ctaaataaat ttcatttaca agctcaggac tgcttgtcaa
      421 aagctctgtt gataatttta ttattgttgt ataccttctc tcttaatgac ctcagcccag
      481 taaacgcagg aacagttagc tctccagcaa ccaa
//
LOCUS       KCLA01001044             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16914upu ultra-conserved element locus uce-4167,
            sequence.
ACCESSION   KCLA01001044
VERSION     KCLA01001044.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16914upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-4167"
BASE COUNT           92 a           39 c           42 g           91 t
ORIGIN      
        1 ataaattctt acattttaaa cagacttaca tttcacatgc atttgctctc ccctactgag
       61 cagagtggaa catctattgt caaatgcata aaataacatt agaaatgcaa acttaatgta
      121 gccaatggta atgtgttatt taaaacttat gagcctgaat aagggcttat tttctccaaa
      181 ttgaaattta tagtttcatt ttaaagtgct aacttgaata ttgatgggct ttaggcatgc
      241 tgttataaaa tgggattgaa aaac
//
LOCUS       KCLA01001045             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16930upu ultra-conserved element locus uce-7793,
            sequence.
ACCESSION   KCLA01001045
VERSION     KCLA01001045.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16930upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-7793"
BASE COUNT          123 a           90 c           85 g          129 t
ORIGIN      
        1 ttcttattta tttgtgcagt tcttccctct gatttagact tctcagccta atttaatgtt
       61 tgaggttttc tgaatatcac cctgcccttg acacaaagag ttgtgaggct ttgaaccttg
      121 tagtgctttc ccctccctca aaagcagaga acagtttctg gtattcaaag cataaacaca
      181 actgcccatg agactgcttg gatgaggact agttaagaga gttacattag ggcagaaatt
      241 cgggtcacat catatcaaac tgaaagcatc aggccaaaga tagacctggc taataatgct
      301 tgcacaggat cattttaaat gtgaaaactc ctcctgtcat gaaagaaatg gcttttcagt
      361 ctcaagtcaa tgcaggtatt tccaataggg ttgtgccacc gcttgctaaa aggcaatgca
      421 tttgcat
//
LOCUS       KCLA01001046             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16945upu ultra-conserved element locus uce-3309,
            sequence.
ACCESSION   KCLA01001046
VERSION     KCLA01001046.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-3309"
BASE COUNT          206 a          120 c          116 g          183 t
ORIGIN      
        1 ttgaagggaa acactgtagg ttttcatcaa aacctcatta caaagaaaca gcagagagtt
       61 ataaatgagc tgcagagtat attataaggc acgttttgag agcaacacgt gcccagagat
      121 ggacaagact aaaataaaag taggtgccac atccatgagg aacatttctg ttgagcgcgg
      181 ctcacgcgag gaagcattcc acaggcataa cttcgcagat aatcaaagcc aagtattaat
      241 acagttttat cagcccacct cctgcacgat atttcagtag atttcctttc acacagtgat
      301 atttgtaata aatgttctgc ctttgtttta aagtcagtcc gtagaaagat gacatcagct
      361 tagcaaacaa taaagtgcct gtaatattgt ctccagaggg ctgttacatt tactttgtag
      421 cagtaaaatt caattttcaa aaaacactac atgaatgatg ttaggttatt aaccctatcg
      481 ccaccataaa acatcatcat tgtgtgcaga atgtaggtca ctatctagga gctataagtt
      541 gctttttgtt aaataatcca tttaagctgc ttttctttcc tagagcttgg gttgtgtccc
      601 ttccctttga aaataaagaa acaaa
//
LOCUS       KCLA01001047            1112 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16959upu ultra-conserved element locus uce-1490,
            sequence.
ACCESSION   KCLA01001047
VERSION     KCLA01001047.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16959upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1112
                     /note="ultra-conserved element locus uce-1490"
BASE COUNT          331 a          194 c          216 g          371 t
ORIGIN      
        1 ttttccttac tcatttctac ttagcctaaa gatcttagca atttggtttt gtttcattat
       61 caatttattt ctgagaaata tcttgtcttc atctagtact aaaattacaa tttcccctta
      121 gtttgcaaca gggacaaaag taaattatct accaattctg agtaactacc tctgtgccta
      181 gatctttcat tctctgtgtg gtgctttaat ctggaaatta atatagcagg tactcctcag
      241 aaagtctcag agaggaatgg aaaaagatgt tttatattgg aatcaagcaa tcagctatat
      301 gctttagctg tcttggagag cagtaaattc tttcagcaag tggaataaac cagtgagaat
      361 aactaggaag gcatttagtg aattacacac agagtgcgtg gtttagacct tttctggaac
      421 acaggctgca gtttagctgt cgaggcacta tcattctcct caaaggtgaa atgatttaga
      481 ggcctagaga aacttaattt ttcttgatca ccatgtgcaa cctggaattt taatggcagg
      541 cataattaat tcttctgatg ttaatcatca gggctgggct ccacaattat cagcctcgtg
      601 cagctggggc atggtgcaga catgaaaaat taggaaaatg aatcagtaat agggtggcag
      661 atttaatctg catcatgaaa acaaagttaa aaagaggaag atcgagagaa tttcagctga
      721 agcttttgtg ccaatgagca ctgacagaac tgaaaaatgt tgccgatgtc cgaagtgatt
      781 ggtaattacc aagccattga attttttatt gtcaatttat cattgcgcca gaggttaaat
      841 ttaacatctt cttctaaagc catcactcta agaggaaagc aagctttgca tcacgtggcc
      901 caggagtcag tgaaaggtta atcaggtatt cctttagttt gtgtgtgctt ccaaatcagt
      961 ctttcttttt tgtttccttt atactgcata catagtgtgg agtattttct aatttatatt
     1021 acttgtacat ttcagaaaaa tgttagattg cagtcctcag cacagcatta tctacttcac
     1081 tgtgtgtttg taatgttgta ttttcatacc tc
//
LOCUS       KCLA01001048             995 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 16974upu ultra-conserved element locus uce-1480,
            sequence.
ACCESSION   KCLA01001048
VERSION     KCLA01001048.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="16974upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>995
                     /note="ultra-conserved element locus uce-1480"
BASE COUNT          297 a          220 c          175 g          303 t
ORIGIN      
        1 gatgctaagt gtcttattta agagagaatg gtttctctat ttcatacgtt tccttctatc
       61 atcaccaggt atcttttttt tttcccctta ttgctgaaaa taaaaagtta cttctgctga
      121 cattaaaagc ttgattttac aaactattta atgcactcta aggatacttt taaaagacat
      181 tggcatgttg atgtgagccg tacaaaggtc agtgatttgg aggctctttc agacaatttg
      241 ccaggatttt ggcattttgt aagcacacat aggacagctc tccagcaagc tgaccttgac
      301 agtgaattgg ataaataaac cttcaattta ccccctccag ctcaatgcta gcccagctga
      361 tccctctgga gccttcacct gtccatatcg ttcaactgcc tgcaactttc aactgacgaa
      421 catccacggc tttacaggtt ctgtgacaaa caccatctaa cagataaggc ttctgaaaag
      481 tcaaagtcaa tagtgtttcc attgaaaatt taatgctgct tccatcttta cccatcattc
      541 tccctactgt tgcatgtatc ccaggaggca cttcaagcaa aagcactact ccataacagg
      601 taatgacgtg gcatttaatg atactgtcca aagtgatcca agcccatgga aagtaatgtg
      661 cactcatgta ccagataagc acagctgaat gtactagaac agcagtatct ttcaccgcac
      721 tgtcactaga tacaatgtga catatgctct gccattgtac ctggcttttc cttttacttc
      781 accatcagag gaaaagagca ttttcagata cagagcacca aagtgttaag ggaattcagt
      841 aaaaggtagg atggcaacat atccgtaatt aagtattcac agcctcttta atacttcagt
      901 gctcttggat tcgctactaa aatctgtgaa ttatacctca ttgaagaatg tccttaatcg
      961 actctgacat gttttattgg aggcagaaaa aatgt
//
LOCUS       KCLA01001049             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17005upu ultra-conserved element locus uce-4138,
            sequence.
ACCESSION   KCLA01001049
VERSION     KCLA01001049.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17005upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-4138"
BASE COUNT          148 a           89 c           80 g          169 t
ORIGIN      
        1 ataacaatgc ctgaaaaaat tcaaaatgaa attgggactt tggcattttg actcaactgc
       61 agtatgcgaa gacattgcat gactgctcat tttaatggac catccattct gattcttcat
      121 caccctgtac atcagcccgc tttccccagc tatctcatgt tctgtagcat tggtattgtg
      181 ctcctgagga tgctttattg gtgaactaca ttaaattcat ctagaaagaa ctttaaaacc
      241 aagccttttc atatgccctt aggattactt ggctagactt gaatcaattt atgcatttga
      301 tggttagttt cagttgtcat ggataaacaa aagggtaact gtctagaata tatcaaatat
      361 tgtttcattt tgaaatgtat gtttccagct atacacatcc cctactctgt tttgtaaaag
      421 tattctgctg ataaaatgta gacttatgtt tgacagcttt ttaatcaagt tcaaagagaa
      481 taaata
//
LOCUS       KCLA01001050             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17021upu ultra-conserved element locus uce-6356,
            sequence.
ACCESSION   KCLA01001050
VERSION     KCLA01001050.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17021upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-6356"
BASE COUNT          190 a          130 c          113 g          182 t
ORIGIN      
        1 caccatcctg ctattaactc ggttaaaatg tatgtgacca cggaataagc atggagcatg
       61 gatgagtagt agagagggag gacctcgggg ccaggcagtt tacaaacagg catcgcagcc
      121 actctgtcct ttgccccctc ttacatttct tattacagta cattaaaacc ctttgctctg
      181 tcaaattgac aaaggcagct gtaaaagggg tcttttctaa tacacagtca tataaactat
      241 gtttgtacac ttaccacata atccctaatt acttccatac tttcatgtgc ggagagcttt
      301 gacgcttgca ttgctggata cttagtgaat gaaataaaaa tcagaaatga tttctgtata
      361 agtatggggt agtatgtggt atgcggatta gctgcgacac tggcgacaca gctcacattt
      421 cagaataaat atactaagtg tcattgatcc actaagtgtc aaataaaaaa ctatgacacc
      481 aacaaaactc ttgtgtgacc ctgacgttcc tccagtactt aaagcaatta ccctactatt
      541 taataacaat gtttacagaa ttgcttttgg attggctatc atctatgtca tacctatgtc
      601 aataattccc actga
//
LOCUS       KCLA01001051             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17036upu ultra-conserved element locus uce-7653,
            sequence.
ACCESSION   KCLA01001051
VERSION     KCLA01001051.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17036upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-7653"
BASE COUNT          241 a          188 c          148 g          297 t
ORIGIN      
        1 ccttctcttg agaatcttta ttcactcagc cacaaaagac aaaatttggc tcatttctgt
       61 cctgtttaat gtctttcctg tagcagcctc ctactgctgt ttcctggatt tcactccaga
      121 aaagtgctct gcagccttgg agttgttggc acccatctgc tgtgaggatg taagatctat
      181 ggttcccttg agatcctcag tttgtctcca gcgcctgagg gagctggtgc ttgacctata
      241 tctcaatttg ccttctcgtt gcttagtcag tacagaaagt gttctctttc ttgatgggtg
      301 actttattct tttataaaat tgtcctacat gaattcttcc tgaaaaatac agtttagagg
      361 gagtattgtc aaaaattctg tctctctcta tactttatta tcccctcatt ttttttgtca
      421 tttaactcca attatgggat gctaagtgct tttggaaatt tcattgttaa tatcttctta
      481 cagtgctatt aacgtaaatc aacgttaata gtgtcccagc aagtataaaa gcaatcaaaa
      541 attcagtact cacgaatcat tctgtaattt cagcataaaa tgttaataga aataaaatcc
      601 aataccataa aatatcagca aattcaactt taaatacatg tgatgaatga ctttaccgtt
      661 ctgcagcgtc ccgtggactt ctgcaatgtg aaacctttaa ctggtgaagg tctaacacac
      721 acctctccct cctccatcac cttcccaaca caaggtgtgc ctgggttcca gaattcaaaa
      781 atccatcttc actgagaatg tggcatccgt attcaggtgt ttagtgataa taggaaggat
      841 tactaggaat ctgttaactt attctagcta acag
//
LOCUS       KCLA01001052             931 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17066upu ultra-conserved element locus uce-1995,
            sequence.
ACCESSION   KCLA01001052
VERSION     KCLA01001052.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 931)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17066upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>931
                     /note="ultra-conserved element locus uce-1995"
BASE COUNT          254 a          196 c          216 g          265 t
ORIGIN      
        1 gtctggtcta gggcaagcaa cccactgtca gtttgctcca aggagaggca acggcctggg
       61 catccgcgtt attttgccct gtatcaggtg ctaaaagtca ctaaacacgc tgtgtgtcac
      121 aatatttttc cccaatttga cttgcttgcc cggtcatatt tttacttcag cctttaggct
      181 cgaaaaagca tgtgcataat cagttcattt tgtgtggtct gggctataaa aatgccccct
      241 ctgttcttcc catatgaaaa atgtggtttt aattttgggg aacttatata attttctgtg
      301 ctttcttttg tatcccagat taaaaacaaa tgctcccttc ccctaacttt gcatgttcca
      361 attacagagt tgtgaaaata agtcatcctt cagcttttgt tactttagaa cagctatcag
      421 tgatgtcaga gtcaatacta aaagcattaa gaatgctggc agaatgtaat gcagctgcaa
      481 tccaacatga tgttggaaat ggggttgaga gcataaaggc tttccatatt cccagggcgc
      541 acaactgctc gcggccttgg ctttgatctc ttcaaaggct gctgcctcct cctagatgga
      601 gagacttggc tgccactcgc tcgcattgaa aaaaggcaga ggtctctatt caggcagaaa
      661 tcaatcactg tgcagaaaca attatgtgta attcaaccat catgaaaaca gggcgagatt
      721 atgggtttgt tacctgagtg actgcatgga gatggggagc aacggacacg agagtcctgc
      781 tgacatgcca catcttgatg acaattatag acacatgaat gatgtggcgg gcgggggcgg
      841 cgagatgaca aatgctggtc acgctgtcca gcagagcaga aaatgaggtt acaattggga
      901 gataatgttt gcatatgtaa ccatatttca g
//
LOCUS       KCLA01001053             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17082upu ultra-conserved element locus uce-7928,
            sequence.
ACCESSION   KCLA01001053
VERSION     KCLA01001053.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17082upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-7928"
BASE COUNT          184 a          194 c          182 g          169 t
ORIGIN      
        1 ggcgaggagc gccggagcgg gatttcggcg cagtggccgc ctcgaatcga gaacgagaaa
       61 atgacacttt tggggcagga cgggacgaag tgagcagttt ccagtcgctc tggggtgctc
      121 tcgttcgggt cccaccccaa tatttcaagt tgtgcgttgc gataagaaaa aagtgcagta
      181 atacgtgaaa tcaggtagtt tgtgaaggat taatcctttg cttgcttcaa atctgaacag
      241 gaatctccac acaaatgccc cacatgtgga agaaccttta atcaaagaag taatctgaaa
      301 actcaccttc ttacccatac agacatcaag ccctacaact gtgagcagtg cggcaaagtg
      361 ttcaggcgaa actgtgatct tcggcggcac agtctaactc acaccccgcg gcaggacttc
      421 tagagcagcc agggacctgc gcccgctccg gcagctccaa cttgcccatt ttacccaagg
      481 actgtgttgt agggactcac aaacacacat acacacgcgc agactcgggg ccaagctttc
      541 ctaccacacg tctgcgaaac tcgcttagag agtgcggact gcaggatcgg gcccctctcc
      601 aactcacacc caggcgtaca gctcctcttg tagatactcg cggctcattt tagagctctg
      661 tagagaatgt ggttttcttc gtttgtttgt tttgtatcgt cgtgtcagat gcacatcgat
      721 aacagatct
//
LOCUS       KCLA01001054             379 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17096upu ultra-conserved element locus uce-1476,
            sequence.
ACCESSION   KCLA01001054
VERSION     KCLA01001054.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 379)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..379
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17096upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>379
                     /note="ultra-conserved element locus uce-1476"
BASE COUNT          123 a           84 c           82 g           90 t
ORIGIN      
        1 aaccctttga aaccagctcc aaattaagag ctgcaccgag gctgtcaagc ccccgctagc
       61 accttgtgtg cagaaaggga gctgagccca tttattagag tgatgaaagc aaagggatct
      121 cgaaattgcc ctccttcgtt aatgagcagc cgaagggatc ggtaagcata atttcagagg
      181 ccagtaatat tttatataat cgccgagcgg tttaaattga aaacccccaa ctgaatcaat
      241 atttactgca tcgaaacgaa atgaatagta ataagtcact aagctccctg tcctgtttca
      301 taaaataaaa aattatcaaa atgagcccgg gcgcagagcg acgatcgcat taacttttat
      361 ggcactcggg gagtcgtaa
//
LOCUS       KCLA01001055             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17111upu ultra-conserved element locus uce-6095,
            sequence.
ACCESSION   KCLA01001055
VERSION     KCLA01001055.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-6095"
BASE COUNT          215 a          157 c          143 g          234 t
ORIGIN      
        1 cttaaagcct tataatcccc caaattacaa ttatcagtat ttatcaaaaa aacacggtgt
       61 catgctgcat ttggtacaaa agcatccagc tgaatattct attaggcagg tcctgtgaag
      121 ttaaaaagag gaccgggttt agttccctca ccatgggagg aaaaaggcat gaacaatcag
      181 atatttaaca cccctttgca attatgggaa tttttattct ctccctagta gggaacacag
      241 cattttactg cagcatttca agtttggctg caatggtatc tgatagaagt gcttttatcc
      301 cctgaagata cagtacaaaa tacaaatcac cattggtttt atctcagctg gagctgccta
      361 ttttctaaat gagtttactc tgtgctactg cccatcaggc acatttttca tccttcatcc
      421 ccactctttt actatagctg ggtttaagtc ctttcttctg tcctttgttc cttcagctca
      481 gagaagtaaa cagcaggatt gatcttacac tgcattttgg tattgttcca actgctcatc
      541 aatagacatg ggctgggaat gcactgactg gaaaagaagg gcaagattga aattcacttt
      601 ttgttctttg tgccttttag tgtgcagcgg aatgtcccta atctgaaagc tgctacactg
      661 actgcctatc aacatgcaaa ttaatcatca agtgacgagg cctgtagatg ctcagcgtta
      721 aagtctttag aggtatctgt ggaaaaaaa
//
LOCUS       KCLA01001056            1077 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17127upu ultra-conserved element locus uce-2572,
            sequence.
ACCESSION   KCLA01001056
VERSION     KCLA01001056.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17127upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1077
                     /note="ultra-conserved element locus uce-2572"
BASE COUNT          317 a          179 c          238 g          343 t
ORIGIN      
        1 tgttctgttt ggtgacagag accatggcgg ccctgaggga atggaccccg atggtgtcat
       61 tgaggtgagc acttgaaaac tgactcgaga atgtaataac tgatggagat agttttattt
      121 aatatttcct gtttttttct ttaatacaga gcaattggaa tgaaatcgtt gacaattttg
      181 atgatatgaa tttaaaagaa tcccttctaa ggggtattta tgcttacggt tttgagaagc
      241 catcagctat tcagcagaga gctatcattc catgcattaa aggtatgctg gttgtttatt
      301 gaacattcag atagggcagt gataaaatat atagacttaa gtgtatgatg atacctactt
      361 tgaattctta ctgaacaagt gatatgatgg tacaccatct ttcggggctg acctgaaatg
      421 gagagaaccc ttaatactga tcacttcaga ggggatgaaa tgaaactaaa accatgaatt
      481 acttgcttgg gatcagtaaa tgtgtatcct acttttttta gggtatgatg tgattgctca
      541 agctcagtca ggtactggca agacagccac atttgctatt tccatcctgc agcagttgga
      601 gattgatctc aaggagtccc aagcactagt attggcccct accagagaac tggctcaaca
      661 ggtattgata gtgtagctta aaatgtgtgt tgcataggtt tcaggtttca caacttagac
      721 aataaacttc ttaaggggct gtgactaatc cattcagaac cttttgtctt gagtaatggg
      781 gaatataaac tggtttctgc ctcagaagtt ttccacttgc ataaaaagta ctgatgcaca
      841 ttgcaggcat gcaggagcta gctgctatgc tgcgtataat tctgagggag cacttttagc
      901 acaccaaatt acgtgataca ctattaaaga tgtgttctga gtggaagcaa atacatgttt
      961 tagaagctat ttgaacttgt gcagttgtgc aacatgaaaa ctgcagtaac tttttggttt
     1021 tttgacaatg ttctgcatgt ttaattcacc tttaaggctt gattctaaat gaaaatg
//
LOCUS       KCLA01001057             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17142upu ultra-conserved element locus uce-6179,
            sequence.
ACCESSION   KCLA01001057
VERSION     KCLA01001057.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17142upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-6179"
BASE COUNT          118 a          137 c          152 g          189 t
ORIGIN      
        1 gggggggtgg ttgatgcctc tgtggagggc tccactgtat ctcacactgc actaggacaa
       61 gccaggggta aaaccaaagg tgggagccag ggagcaggcg ggctgcgtgg aaaggatcta
      121 agcgacccct ttgtagctct tcaatgttgg ttctatttat acgagatttc atttccttgc
      181 ttgtgatgcc ttgttttttg tacagtttta tgtacatgca ggtgtagctt ttctaaagga
      241 gaaatcctat ggcagagtcc caactatttt tcagatggtg acctatgtct aaggcaatgc
      301 ctcttgctaa agttgtattg ctctcaatgt gtgatgcatt tccctgtgcg gggaaggctt
      361 tgggccttgg gcttggtttt ccccgggcgc tgtgagcaca attgattccc ttctttctgt
      421 tcagagcagt gagcatgaca ccgtcgtgat cccctttctg ttctctcctg ttctgtttgt
      481 ttgctgagct gtcaaatgac caactccatt gtaattagcc cttcccgaag ctttacaata
      541 aaagtgtgaa aacctgggtg cctgtgcctg ctggattctt cctacctgtc ccatcc
//
LOCUS       KCLA01001058             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17157upu ultra-conserved element locus uce-4696,
            sequence.
ACCESSION   KCLA01001058
VERSION     KCLA01001058.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17157upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-4696"
BASE COUNT          220 a          106 c          125 g          174 t
ORIGIN      
        1 ggtatgagca acccatgcaa ttataagatg aaataacaga cactcacata taatttttgt
       61 aagaaaaagt aaaaacctgg tcttaaccag accggcaagc atcgatttct gtcagatgac
      121 tgcagtactc attcttattt ttaaggatta tgctaaatga tggtctatcc agacttatct
      181 ccaagtcagc acacttaact gctcccctag catcaggaca cagatggatg ggaaagatga
      241 ccctgacctc cataagaccc acattcctgt gcaaggatag aagcatgata atcaggaaat
      301 gatggttatt agttacagaa aatgcattat tgtgaaaacc aggagaaaag tgcttatgag
      361 aggaagtgat tggattatgg gggaatgaga gaataagact aggtcacttc tactgagtaa
      421 attgctgtga tttataagag aaagggtata gtgatatcat ggcctcatat tgactggatt
      481 catttcacaa acaaacttaa atcagaacgt ggcagttgac caatgaagca aacacatttt
      541 ctaagaagaa tttttttgca ttagacacaa tagacacagt taattttctc aatgtctttc
      601 taattatgca ggtgatttca ggaaa
//
LOCUS       KCLA01001059             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17173upu ultra-conserved element locus uce-1741,
            sequence.
ACCESSION   KCLA01001059
VERSION     KCLA01001059.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17173upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-1741"
BASE COUNT          229 a          173 c          206 g          220 t
ORIGIN      
        1 tttcttattt cagcagatag cccccaaaaa aggcaaggat gtcaaaggct tcgagtcccc
       61 cctttgacat tcacgcagtg ctgagagtca gccggggtct cagctctgac aaatttgcat
      121 ctctttgaat gtgatgcttg aaaaaagccg gagctgctag attaaatttt tttttttccg
      181 tcgagaaaat gagaaaagcc tctatctctc cgccgagtct actgggaaga tctttattct
      241 gattcttgtt agaattgttt atcaccctga cagaccagac tcggacgaga taaaggcgct
      301 gctccatcac ggggcctgac agtggtagga catgcagaga aatgaaagga gcaggggaaa
      361 atattattaa tagatgccga cttgatttgc ctctatggca cgtcaaggaa ggaagggagg
      421 ggggagccac ggcttgattg caagcctatg aagttctgtc caaaaaagaa gctatttttc
      481 attaagtgat agaagggctt ttttcatgtt ctttcctgag gagctgataa cttatgcagt
      541 ttattctaac cctgctgatt tctgtcaggg aaagaaaact cctgaaagat ggctccagct
      601 cgtccttttc agagaaggag gctgtcttgt caaaaatggt agcaaagcat taaagccctg
      661 gccttggctc ctgcaaggtc cctcggatct gattgggtgt gcatgtgtcc gtggggctag
      721 gggaagaagg cactattatg taccctatgg ccctttgagg ggaaaaaaaa tcaaaatgta
      781 tatgcagagc agtgcttgca catatgcaca tgcacacacg caccacat
//
LOCUS       KCLA01001060             818 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17188upu ultra-conserved element locus uce-4557,
            sequence.
ACCESSION   KCLA01001060
VERSION     KCLA01001060.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 818)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..818
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>818
                     /note="ultra-conserved element locus uce-4557"
BASE COUNT          294 a          155 c          124 g          245 t
ORIGIN      
        1 tttagaatac aaaagcattt cttctatatt aacttgaatt atcctctcac atgcacataa
       61 atgtttatac cctgatctga ctttgctact ttagtcagtg acagactaca aaaattaaca
      121 ctgtcaatta ctaattatag catgcccaga gatacagcta tgaaagtgta acaaactaat
      181 aggcttgata attttgaaga attacatctt tggtctatca catttgaact ttacttttgt
      241 ctattattat aaacacagaa aagcaagatc aatagctacc atttcataat caaatttaag
      301 ggcaggctgt ttggactcta ttgctaagta cacatcctac tcattttgcc tttttaaaat
      361 cacttaaata taaacaaatt aagttcctat gcatgttgct tctgagtgaa ttacttttca
      421 tttttagagt ggttttccat caccacaaac cttttccttt cccttatgca ccagcaaaca
      481 tactgataca atttaaaggt catgttcttt tcaaactgac agggccctcc aaaattttga
      541 cgagagtccc tccaagaatc acaccataca aacggaaagg aattaagtaa agcatcactt
      601 gatgtaggct caatcatgtg aactgattag aaaatgtaac catggagaga ggtgattcaa
      661 agtgtgacgg acaacctttc aaagaaagga gatgtcatgt tgataataat aagcaagtac
      721 ctgacattga aggagggtgt gaatacagag ggtcaataaa gatataattg ccttcagcct
      781 caaaaaaaaa ttacaaacaa acaaaacacc ccaacaga
//
LOCUS       KCLA01001061            1110 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17203upu ultra-conserved element locus uce-7628,
            sequence.
ACCESSION   KCLA01001061
VERSION     KCLA01001061.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17203upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1110
                     /note="ultra-conserved element locus uce-7628"
BASE COUNT          342 a          238 c          212 g          318 t
ORIGIN      
        1 atgtctaagt gcagaacacc tgttctcacc ttgtacttgg cctcagaatt tcctgcttcc
       61 atttcaggcc tggaagagaa gcttgttccc cctccctagc tacagtaata gaagatacac
      121 cagctccaga cgcaaatttt gttcaattat ctcttcagat catcacagtc tgtgcggtac
      181 tatccatact gctagcaaga gaatcaattt ctgtgtctat gtaaagggtt ggcttctggc
      241 aaagacgtat ctaattgtac ataatgcgaa gctcaatcac agcaccaaaa ggaaaataat
      301 ttttcctttc atgagatctt agattttact gcttgttcac ccatttgttt tggcaacagt
      361 cctgatcccg attgtaaaac tcccacaacc aaatcaggag acgttaaagg aaatgaaccg
      421 taaattgggg gcagcaggat agtatctaac atttctgcaa acaacccatt taccactttc
      481 atggacaaga gttaattaat attctataaa ggtcttccaa aagctgaata cctctcaagt
      541 tctgaattca tggggctgac cttagacttt ctcagaatgg tttttaatgc agtctgttat
      601 cagcaaaacc cgtttaaaca catgtcccat ctgccagtac cccatttgca aaagagcttc
      661 ttatacttgc agacagtaaa gcttctgcct gcctccctct ctcctctaaa taccagctgt
      721 atggtaatga gcacaaacag ctgaaaaata ctgcacagta acaaagctgg tacgaagcgg
      781 gtagaacaac gcttccactc aatgaagcag ttgtagcatg aatttagaag attaactatt
      841 gaacaagggt gggggtagtt ttggaaaaaa gaagggtctg catggatagc aagaaaatta
      901 aaagagacca gaggggcaca agctaccaaa gaaaagccca aattctaaag tacttttctt
      961 gagctgcaat tcttccaatt ttctaaggct tatttctcac gtactaatga tatgccaaaa
     1021 gctattctaa tcatctgcaa gttcagttag tttttaaagg aggcaacttg ttaatggaag
     1081 ttttccattt cttcattggc ttgggggggg
//
LOCUS       KCLA01001062             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17218upu ultra-conserved element locus uce-5937,
            sequence.
ACCESSION   KCLA01001062
VERSION     KCLA01001062.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17218upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-5937"
BASE COUNT          190 a          137 c          148 g          215 t
ORIGIN      
        1 tgacccattc catgactcta tgattacacc agatacccgt taccgaggtt tcttaacgtg
       61 cttgtgtttt ttgattttgc acttgtgaaa tatttagagg ctgaagcgta ggtattttta
      121 atcaaaaccc ggatttcctc accaaatggg tgattacatc atttgcacat ttatactgcg
      181 agacatttta acgatataag cattttttca tgtagacagc gaccataata aattgaaata
      241 aaattcagcc ttgatggatg ttgcgcgtgt catgtacagg gcaagtccca tccattaacc
      301 gtgctttgcc aaggcagcaa tattagtagc atttgaatgt ttttcttatt aagaagaaaa
      361 atggtcagcg acatcaatac cgtctgctcc ggagaccgtg gcaaatggaa agtgcctgca
      421 gcacatctga attcctccct gcgtttggga tgcggctctg atgcaggcag tgagttttgt
      481 tttaaagagg aaggtggact gttagagctc ttaggatgaa agagagaggc tgattacaac
      541 ataatggagt gtaccgtatt catctctttg aaatacgacc tcactcggcc ttttccattt
      601 tacaatcgat tctttcattc ccttaatgaa cctgtgcgtt catgagtctt ccttggaagt
      661 atgcacatga agtattacag tagcagggac
//
LOCUS       KCLA01001063             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17234upu ultra-conserved element locus uce-2908,
            sequence.
ACCESSION   KCLA01001063
VERSION     KCLA01001063.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-2908"
BASE COUNT          158 a           78 c           92 g          182 t
ORIGIN      
        1 ttcaggacaa aggttgattt gataatcata attgcatttc tactatatct attttcttaa
       61 gtgttagcag atttattgga cttttcctgt ataacctatg gctgatttgc tgcttccttg
      121 gtaatttctt agtaggcagt agcaatttct tatatcttca gtaatgtctc gaatgtacgt
      181 tttttatatt aatgatctca ccaggagaaa aagtgtactg tgaatgcatg atggccatat
      241 ggaaaagaca atgaagttta gtaattaaaa ctgaaaaggg aaagaactat gcagtaatta
      301 gaacactgat taatcagctg gtaattttat cttgattaat gctgctgatt ttcctcttct
      361 tattgaccta ggaaaggtag gtttagacca attaaatata aattattccc ttttttcaca
      421 ttccaggcag attccagtgt tctaagccat agtacgttga agatgtagca ctgaattgct
      481 ttcactaaat tgggcaactc aacaaaaggt
//
LOCUS       KCLA01001064             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17250upu ultra-conserved element locus uce-7457,
            sequence.
ACCESSION   KCLA01001064
VERSION     KCLA01001064.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17250upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-7457"
BASE COUNT          164 a          146 c          146 g          191 t
ORIGIN      
        1 ctgctaagca ctcccttccc tgaaatgcct ggcccgcatc cctcgtacgc ggctgttctc
       61 gtagtgtcca gcctcaagcc tgtttgcagt aaagaatttt caatgttaaa atgctaataa
      121 aattgattca ggtaagatgc gcttaataaa atagtgccat cattacagtt tgtacataat
      181 aatacatctg tagtactgta accttggctg tgagttatga aatcagtgta taggccaatt
      241 agctacatag ggggttttaa ctaagacact ataaacactg gttttaaatg tcctaattag
      301 taacttgctc attaattaac tttctgatta attgtgtagc aatctaattt gtagatgagg
      361 cacttaaaca gtgatacctt gtaactcttt cgtctttaaa aaacgtaatt aaaatacagt
      421 tttgccaccg ctcggcccgc aggtttggag ggagctgccc tgcgaggcgg aaaggcaatt
      481 tggacgaccc tgctcatagc tggattccct gggcaatgct acagtgtagt tctcttgccc
      541 cggggaagcg gatacccctg cacgaacgtg gtgtggaagg gggtcttggc tccgtgtctc
      601 ctctcccgag tttcctttcg cccctagcag gcggatccgg agctgtt
//
LOCUS       KCLA01001065             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17265upu ultra-conserved element locus uce-3922,
            sequence.
ACCESSION   KCLA01001065
VERSION     KCLA01001065.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17265upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-3922"
BASE COUNT          232 a          134 c          144 g          237 t
ORIGIN      
        1 agaaattcaa ttattcaaac atgatttcag gatgaagagg actcagcaag caaatagatt
       61 aatatttaga cttgctgaat ctctaatctc acagtgttac aacagttttt ttacaccaca
      121 aaaccctgag caagtatttc cctggtaact atgctgttga ttcattttga aatttaagga
      181 gtattgcctc taaaattgcg gttttggaat ttgagatcat gaactaagcc ctttaatgga
      241 agaaactaag ttgtttgctt ttgtttttag taagattttt ggtaagtatg acaacagtaa
      301 gcctgtcagc cctggctttg ctgcacatgt gtagctctgt gctttgagac ccttgaaatg
      361 tctgttttta ggacatcagc agggggctaa tgaaaaggct ttgtttattt taacaaatcg
      421 aaagccactg tagccaaaat aaatataatc tgctttttgg attagttgtc acacatgatt
      481 ttacctacta acagtgatta aagaaccctg gtgaactaga agcatagctg ctctctggtg
      541 actcttgcta aaatagcaat aaacagaagt aaataaagac ttagggtatt agttatcttt
      601 aataaacagt gacactgcat ataatgttgg tggaaggctt caaaaacctg caggtgtcac
      661 tctttccagc acagaacatg ttggtcatgt cagttgtctc aaagcaaagg catcaccgag
      721 ttgccttcat ttcccagctg aacacct
//
LOCUS       KCLA01001066            1069 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17279upu ultra-conserved element locus uce-5879,
            sequence.
ACCESSION   KCLA01001066
VERSION     KCLA01001066.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17279upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1069
                     /note="ultra-conserved element locus uce-5879"
BASE COUNT          324 a          221 c          211 g          313 t
ORIGIN      
        1 ctgagtgacc acttttgctt ttattcatta cagcagtagg gcttgtgcga cttttggctt
       61 acagttctga cattgcttta ggaaatattc tgaactgatc ctttatgtac ccgtgaaatg
      121 agattccatt gaaagaggat gacctaattc tttacaaggg acatccccac ttcccttatt
      181 tttcataagt ggacaaaatg gatgtgcagg aatacagggg agcacaatca tttcttctct
      241 ttaactttac tgtaatccat actggcgaag aaaacattgg gaaactcacg agaaccccta
      301 gtaccgacat cctgaactag aatgtctctg gatgccatga tgggcagcaa ggacaggtga
      361 ccagataatt attcctggca cttgcaggca gcattctggc tcagagcttt gcatcttcta
      421 aaaaatatta ccagaggcac caaaagggaa atcaaaatgg agccaggttt tattaccgag
      481 aaggtgcttt ccctctccac tgcagacagg aaggggaggg gtctggttat tgtttcagat
      541 tttcccccct ctttctccag gtctttaatc ccagacttgg cttgttgcgc ttcaaattga
      601 aatatcctga acagatgtaa aaacacatgt gagccactgc tcacaagctg tgcaaagctt
      661 tgtttcatct gctgatgatg tgagcctaaa ggagatcttt ttaaaatttc atcactattc
      721 aaaaggataa ttaatacata cccccaggct ttgattatgc tatacccagt gtgtactgct
      781 ggtacaaaaa taatgaggct ctcatcaggc cgaatgaata cttgcagcaa acattcagtt
      841 tccataagaa atttaagatt cagcggcggt accatgtagg tggcttaatc taattttaat
      901 ttgtaacaca atacaataga taagatcatt tgtttgtaac tagcacaggc attttgttta
      961 catgaaaccc cagtcagcat tcagcagatg gtctttttaa aggcttaatt gaagttttct
     1021 aatctaaccc ctccattacg aagggggaaa taagacacaa acaaaaaaa
//
LOCUS       KCLA01001067             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17295upu ultra-conserved element locus uce-3097,
            sequence.
ACCESSION   KCLA01001067
VERSION     KCLA01001067.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17295upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-3097"
BASE COUNT          321 a          191 c          189 g          285 t
ORIGIN      
        1 atgacattag tctcaccaag acaaaatgcc actttgcagc aagcaataaa tctgacaaag
       61 catttttaaa cataatgccc taacttgcta agacaggctt ttacacaatt ccaaactctt
      121 ctccctgaaa attaacccag ttgattctcc aaatgttaag ggtcttgggc aaaagtaaac
      181 cgaaggctga agtaaaataa ccatcccctt ggaactgaac aaaaacttaa atccaggagg
      241 aatcacagtc taatttcata tacatatata tgtatgtgat acacatatat atgaaattaa
      301 aatagagata cacatgactt gggcatcaga aggggcctgc tactttcata cattcataaa
      361 tagctgctga actctactca tgaagaagct cttgtaggca gtttggggat ttgaaaatct
      421 cggggacctc actgtccagc ttacagatga ccttgtatat ggccttcttc caggaaggat
      481 caacatcttt gcctgcgata atggcattga aaaactcccg taacgtgatc tgagccactt
      541 ccaggaatct ctctggaacc tgctgataca aggagacaat ggcattaata cagttttcaa
      601 tttcaagtct ctggttcttc aaaggaaact gagctaagtt ctttctttca gaaaggggct
      661 tacatagcac ctgcattttc taaatgtggc agccttctat tctcttatgc aaagatgtta
      721 tatatagtac tatagcaata acttttataa catgtgttag agatctttgt agagtctact
      781 gacagaatgt aggtaacaaa atgttactgt ctgagtttgg agagtggggg atttatagga
      841 tataattagc aggaggggaa acaaacacaa ttgtctttaa ggagagaaat ctctgcttga
      901 tatttcactc gtgcatgtat ggctatgttc tcctctccat gtgcaaacaa atatggaagt
      961 tatgcaggca cagaaaaccc tgtaga
//
LOCUS       KCLA01001068             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17310upu ultra-conserved element locus uce-34,
            sequence.
ACCESSION   KCLA01001068
VERSION     KCLA01001068.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-34"
BASE COUNT          218 a          116 c          137 g          216 t
ORIGIN      
        1 aaaaaacaaa agtgcctgca gtcaactctc ctgtaaagta cagtcctatg tctctggtga
       61 ggtgaaagga ggtaattttt gcacaactaa ttctctggat gtcttagtca tatatttgca
      121 gatcaacata ctaaaaataa agatgaataa cataaaatat aattggcagt aacttgataa
      181 ctcgctgtat aattttgaca gcaaggatag agacaatagc aatagctgat ggaccagaca
      241 gaaggggaga gaaaggtttt taacatggtt ttctttaaca gcaggccata atcgtgatgc
      301 agacccttgc acttactcag tgctgagaga attactagtt tgataacgac taggaatgct
      361 gttattaaaa cagtatgtgc agttcatttt caacagtttt gaattagagt ctgcactaat
      421 gaaacggata cggtttcttt cacaaagggc agatctgtta gttaatatag ctgcagcagt
      481 gccttgcgga ccatgccttt agctctattt gtatttcaca gcatgataag caaagagtgt
      541 tgattttcaa ggatcctgct gatgaaaggt aatggcatta ttacatcttt atctcaaaaa
      601 caggactgca tggtaaatga ttattttttc tcctcccatc ttccagtttt tttttttgct
      661 gttgcacaaa agatttcttg gctaaga
//
LOCUS       KCLA01001069             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17326upu ultra-conserved element locus uce-6850,
            sequence.
ACCESSION   KCLA01001069
VERSION     KCLA01001069.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17326upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6850"
BASE COUNT          155 a          143 c          114 g          251 t
ORIGIN      
        1 tttgtcaggc aggttgtttt gcctttgtct ttgtcaccct gtgctcgggg aggctgcttc
       61 gattttccat tgagaggtgc ggatatctat attattttcc taaaactcca gagaatatta
      121 taaatttctt tttattgctt ccagccatgt tagttaaagt aattaacctt aatttataaa
      181 tttttatatc aaactgcctt ttaactttta gaactggcag gagaagtcca tttcccaggg
      241 ctcctaatag ttctccattt aatcaaaatt catccatcag attccagtgt taaatcatct
      301 tttaattggg agttacattc tggttaatag ttttataatt cgccgcctct aatagttttt
      361 accacaggga tctactccat tttttctcac tctattattc ctggtgttca gcagggacat
      421 tttataaacg ttcacttccc ctgtctgttc tttgtgatct cattaattct tgatagcaag
      481 ttccctttct cctcattact ggagcataac tacctttatc actaggtgaa gccttactca
      541 tttctacgag tgctctctgg tgttttattt cctcccctcc gaaacaacag tcttcaattg
      601 attccagaga atctgtgtgg gctacggcac ttgacaccgt aggggtatca gcctgggggg
      661 ttt
//
LOCUS       KCLA01001070            1155 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17342upu ultra-conserved element locus uce-1172,
            sequence.
ACCESSION   KCLA01001070
VERSION     KCLA01001070.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17342upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1155
                     /note="ultra-conserved element locus uce-1172"
BASE COUNT          399 a          210 c          213 g          333 t
ORIGIN      
        1 ttatatacta tgaggttttt cttatctaga aagattctgc aaaatctaat gcactaacag
       61 ttaatgcatc ccctgtccgt tagggcagaa atacaaagct gcctattgat atctaggcaa
      121 caatgagaaa cataaagtaa aattgttaat gatgctattt tttaatagaa gggcttagaa
      181 aaattctgca tctgccccta atattcccgt aaatgcacat ttcccgtata gaaaactgac
      241 aaatgtctct gggaatccaa ctccctttaa agcactccta agaatattaa cagataaaga
      301 aaagagattt cacagcaaaa cccacataaa aacccatatt aggaacgata tcaaacttaa
      361 agaatgttgt aaaatgagca tggaaaaatg tacaaaatga attcatgccc atttacatgc
      421 tttcagtcag gctaccagat aacaaagcct ctgtctttgt gttaacactg cagattaggt
      481 caagttttta cccctctgag ctcttttcct gtaaatgacg ggttttgatg tgaaacaagc
      541 aacatgtcaa agcaagttga aagatgtagg cattttatgc catgtcacaa tgacaggccg
      601 gtgaatattt gggccattag gggcttatta gtgaataaat gaccagatgg ttcagtgatg
      661 cacagagatg gacagaactg gatgctacta atcagcactg tctgtacttg atgtcaaatc
      721 acatgacaca gtaacccatg gataccgaat aaaagtaacc attagcaagt caatttgata
      781 tctgtgtggt gtaaacagac ttataactgc acttcagagc tgcctgttat taagaagaaa
      841 taatggtaga gtatttaaat aaacatactc tactcttacc aagttatgat aaatataaat
      901 agaatttcaa ttcccaagtg ctccttttta ttctgaagag aatatggaag gacatttgcg
      961 tattagacta tccccacaga caaaaagact gtgtgggaaa tgctgtaaaa gagaagcagg
     1021 atgcactttc tttgaacacc atggttagca acatcaagtg atgctttgtt tgcgcatttg
     1081 tcactagaat gcaaactttg agaacacggc atgttttcta aggggaggcc atttctgttt
     1141 caatatattc acact
//
LOCUS       KCLA01001071             238 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17358upu ultra-conserved element locus uce-5928,
            sequence.
ACCESSION   KCLA01001071
VERSION     KCLA01001071.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17358upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>238
                     /note="ultra-conserved element locus uce-5928"
BASE COUNT           61 a           59 c           55 g           63 t
ORIGIN      
        1 cagctgcact ggtgctttcc cactgccact ccttcccact acatctgtgc ggggaaacac
       61 gcatcactgg gagccacttt catgattttg ttgcgagcgg gattagctgg attagggtct
      121 gattcataag gaccccctgt ggctgtgagg aagtttcatc acaaggtcag tgtggtgtga
      181 actatattct gtcaacacca ccacttctta tagctgacta caaaaaatac aaaagaag
//
LOCUS       KCLA01001072             991 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17374upu ultra-conserved element locus uce-6367,
            sequence.
ACCESSION   KCLA01001072
VERSION     KCLA01001072.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17374upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>991
                     /note="ultra-conserved element locus uce-6367"
BASE COUNT          321 a          169 c          195 g          306 t
ORIGIN      
        1 aagccagctg attgcatcgc aggaacagca ctatggactt agaatttctg aatatggtag
       61 agtcttggct tttgtttaat taaatgtact ttgtaagaaa aaatttgatt caatatacaa
      121 agctggggtc agaaatgaag ggcagaatgg gactgtttag ttttattcag ctgaaccatg
      181 caaactgact cccaacagaa ctgttactgt tagctgagta atctttgttg tttagagata
      241 aataataata catgttactg aattgcactg acaaatcatt taatgattga gatcatataa
      301 acatgtatat ataaaaaaag ccttgagaag taaagctccc ttcagttgat aacaggacag
      361 ttttgtaaac cacttaaagc tgtgataaaa tcctgcttga ctggcccaca agcagatgtg
      421 acaagttgaa tttatttcct ctcttaccag gaagctttgc aggaaacttt taacatatgg
      481 tgcttttcac ttccatctag agctataaat gttattggaa aaggatgttc ccaggagcaa
      541 caagtttctg acatttctgc caaatgggct ccaaatgatc cttctgtggt tctgaattcc
      601 ccgagttctt aggagctggc agccaagaat ctctgatcta aacacaactc actaatttaa
      661 ttattttatt atagatctgt ggaaggcttt tgcagaccag tgactttgca tctgtattgg
      721 atctagctag gcaggaagca tgagttagaa gagtataaat attttgtttc ttaaccgctt
      781 tttgcttgaa aacttggaaa ccatttcaca cgcaaatcag tcacacaagt gtacatgcag
      841 aagagcaaga aatagagata aaagtaacat caacttgcat ttgttttaca ttttgaatgt
      901 ctgtacttcc tagggagact aagtagtgtg tgtccagtgg gtaagagcag taatgaaatt
      961 cacaacataa tattgtacag ctgcactcaa g
//
LOCUS       KCLA01001073             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17388upu ultra-conserved element locus uce-1794,
            sequence.
ACCESSION   KCLA01001073
VERSION     KCLA01001073.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17388upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-1794"
BASE COUNT          215 a          130 c          143 g          192 t
ORIGIN      
        1 cactctgttt cactacatta aactgctcaa ataaagcaaa cggatattgg aaagagttgg
       61 ccatctgcct ttattttctt ttacttttgt taaggaaagg ggaaaaaaat aaaccccacc
      121 acagcctctg aaaggagaaa gagcacagcc atgaaacaga tagtgacaaa aaacaccctt
      181 tttatcaggt caaaatctca tctaaatgca gttctgatga atggtaaaaa gcttgctttg
      241 tggatttgga gtgggtctca agaccagcaa tgaagtctaa tgattattta atggtgccgc
      301 acttgaagca ggattatgtg agactctctc ccccgttaag agtttgatga ataggttttg
      361 tgacagccat ttagaaataa acaagaattc atcagtctgc ataagaagaa gccagtttat
      421 agattaagtt tcttgaggta attcatgagg tcagtcccat ttagatgtag actattaggg
      481 ctcagctttt gagagcggcc atacaaggga gttactccaa atggacccgg ctaatacaaa
      541 gccctctttc agagggaagc ctgaaatttt tatgaccctg ctgctaggaa gcacatcaac
      601 ttgtcactgt gaagatctgc tggggcaaga cctcatcact ctattaaaga gctctgtgac
      661 cctattgatt tgaagtattt
//
LOCUS       KCLA01001074             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17403upu ultra-conserved element locus uce-7390,
            sequence.
ACCESSION   KCLA01001074
VERSION     KCLA01001074.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-7390"
BASE COUNT          291 a          167 c          180 g          272 t
ORIGIN      
        1 acgctgccaa aagttcagtt ccagaagtga aagcagtact tgacggctac cactcacatt
       61 catatctgta gctgagggaa aacatctact agaaggccgc tgttttatag ttgccactct
      121 tgagtccaca gttgcattgt ctgcaattct tgatggcttg gaaactggta ctatttcatc
      181 caccttatct gtaatataaa agcattcagt aaaataaata tcgtttgtcc aaagactgaa
      241 aatttaagta ttgcaaggtc aaaggaagag atttactttt caaaaaaatg caaagaaaaa
      301 ggttttttgg cattttaaca aggcaatgct tgagcatcat aagtcgtgca agccgagcac
      361 tttttattgc tgctacagag catgcatgct ttagttttaa gcctgcatgc attgaatgtt
      421 tacttagtgt gactcgaaaa acaatcctct tcttcaaacc ttcaaaatgt gaagggagaa
      481 tatctatata gaaatggaaa gaagaccttt agaaatagtg aatctgtaca gcactgtttc
      541 aaatagagat aagcagactg tacttagtca tcagaatttc agtgatattt tggacaataa
      601 caagtactcc agaagtgctc ttttatgcct aggctcctta agtcatcaca tcctaattga
      661 ttcacactcg tggatcagcg ttagtaactg catcgtgggt taactcaagc ttttatatgt
      721 atataactgg acagtctgag aatggattta gctgtggtca gagacagacc aaataggcaa
      781 cgtccaaatc tgaacgagag ctttgacact tggatttggg attctgatct actgtaaagt
      841 gatgatagaa tagaggaaaa gcttgaatca atgtctccca aagcttagag ttagttttag
      901 ccccttctcc
//
LOCUS       KCLA01001075             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17419upu ultra-conserved element locus uce-4202,
            sequence.
ACCESSION   KCLA01001075
VERSION     KCLA01001075.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17419upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-4202"
BASE COUNT          224 a          166 c          210 g          259 t
ORIGIN      
        1 aaagcagaga ttaaattgtt tagctcaata tttaatctgt tacttcctct ttaaagatgc
       61 ccagtggaat ttgtcatatg ccgagctgat aacacataat attgatcagt cataaacata
      121 aaacagagga atctcaggaa gtcctctgca atccttttct ttttaattaa attttgatct
      181 gaactgcttt tgattaattt ccttatttgt aagtatgtga attctggggg ctagtgagtt
      241 tcttaagttg cctggtgctg gtctccggtg agcagctcag ctcaggagca gtgtgattgc
      301 atttttatgg ttttcagata tttaatagct tcttcctgtc attttctgaa tgagtgaata
      361 aggttgagcc ctctgggagc tgccgcagca tcggagagtg gagaaaatga ctcggatctg
      421 tgtacttgac tgattgcctt agtcttaatt gttctcttaa ttagctgcag tagcaactgc
      481 atctggggag agatcacggt attggtaaac agccccacct tggagccctg tgtaatgcct
      541 cttggaaaca tgacaatgag ctctgtagct ccactgagac accaacctgc caaatctgca
      601 gcccctgaag tctttggtct cctcgtgtga tctgtcactc cagtctgtga gatgcaggcc
      661 cccaactgtt tgttcttaca caaattaagc tttaatatgc caaaagacag agctattgag
      721 cagaaggagg gagggggaag acaaaagagc ggtggtggaa ggttgtttgg acaacttgag
      781 ggtggctccc attagagtgg gagaaaggat gtgccatgtt gagtcaaggc aggcttcaaa
      841 ggttttccgt aggaagccc
//
LOCUS       KCLA01001076             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17434upu ultra-conserved element locus uce-3161,
            sequence.
ACCESSION   KCLA01001076
VERSION     KCLA01001076.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-3161"
BASE COUNT          220 a           94 c          106 g          201 t
ORIGIN      
        1 taaattaaat gtcaggataa atacatgtca gtacaggcac atttgtgtct catgtctttt
       61 ccttggttta aaagggttcg tccaatatca gctaggtagt gaactttgaa gcatagtcca
      121 ctgtaataat agtaaagttt aatgatgcat agctttgtga gactgacaaa ttcccagcca
      181 aagtattgat tcctggagaa tttatgaagc acaagctcta ttctatgtta ttatggtcca
      241 tttttggctg aaagaatcat gtaaaataga tttttaaatg agtggtaata gccagacata
      301 aagaaggtat tgatgtgtgt catgaagggt gaaatagcat gccaggtaaa agcatataac
      361 aaattgcaaa caacagtgct gaaactccta caaatgtaaa tttgttttta gttttaatca
      421 aacctctctt tccccaagta caaattttgc aatagaacta aacaatgcat ttatttatgc
      481 tttgatttca agcttcactt tggaatgtgt ctagaaaatg tatatctcac ttacagacat
      541 gttaatcaat atgaattgtg tactacatta caacaaaact acatctgaga ttattaggaa
      601 aaaaaatcaa atgcacatag t
//
LOCUS       KCLA01001077             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17450upu ultra-conserved element locus uce-823,
            sequence.
ACCESSION   KCLA01001077
VERSION     KCLA01001077.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17450upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-823"
BASE COUNT          187 a          122 c          125 g          199 t
ORIGIN      
        1 cactcatgat tattttcatc ctttggaatt aggaaaaatc ctagcgccta cagaagcatc
       61 ttcgttctgt attttaggga agggtgttca gttcctgctt aaaaaataca caaataactt
      121 tgtgttgttc tagactgggg cagaatagaa gcaggtggcc attaaaccat taaaacaagt
      181 gccctgtgct cgttttagaa aaagacaggg gctccctgca cccatttctg ctccaattta
      241 atgaagttgt taaagtagcg agactgacag gttaattatc ctttataaaa gggggacaaa
      301 ttgaactgtg tctttccatc attttttgat atatcaagaa gctcctgagg tgctcagatg
      361 ccactctggt gaatagaaca actaatccac tctgctattc tttgctgacc ctggtccccc
      421 catcggggct ttgcagtata ttgcagttgg tttttgtttc acattcaaca gattctactt
      481 tattataaat tcagaaggat ttttttcctc catatgttgg ctgacagctc cactgaaata
      541 actgatggct aaatttaaac tctgatgaaa attaacccga gtgttaaatg caaacagagg
      601 ctgcttggaa agaaaagagt tatcatggta aat
//
LOCUS       KCLA01001078             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17465upu ultra-conserved element locus uce-5140,
            sequence.
ACCESSION   KCLA01001078
VERSION     KCLA01001078.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17465upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-5140"
BASE COUNT          258 a          139 c          182 g          246 t
ORIGIN      
        1 ttcttttatg aggtcaatgg tccaaaaata gtgtcatcct atagaagagg tgtgagaatc
       61 gcgatctggt tttatatagg tctgtatttt caggtgaggg atactcccca catgcccatg
      121 tccgtccatc tctctgcctg taatgcaatt ctgtagcagc agcattagaa cagattgctg
      181 gcattatggc agcaagtata ttgttgggag taacttggca acacttgtag gtgttgtgac
      241 gctggctctt tgctcaaggg caaggacagg ggaggggatg ctggatgcaa accagtgaga
      301 gaaataatgt cagaaaaatg cagaagatga aagcagtgac agtaaataag tctgaaatta
      361 ttttaggttt acatacttta agtcctcagg gactgaaaat acagccaaga attgcttcgg
      421 caatattcct tcataaatct gcataataat ctctcagagg ggctttggtg aaattacaag
      481 tattcattta ctaaattggg ttcagtgtct gtatcatatg ccgtatgaat attcagtgcc
      541 atgatttcat ccaaactcta ttgaagttag catggtccgt gagctcattc gaatgataac
      601 ccagacagtg ggaatgggca ggaagggctt taaaaaataa ataccaattt ccactagact
      661 ccagtaaaga aatatttagc agctatgtcc ttaagaatgg cggtaatata cttatatctt
      721 gtggaatttt aaatctttac agatctgatc ttgggaacaa atgttttcct gctacaaatg
      781 taatgaaagg gatttacgca tgatttatca aacaatacaa tgata
//
LOCUS       KCLA01001079             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17480upu ultra-conserved element locus uce-5051,
            sequence.
ACCESSION   KCLA01001079
VERSION     KCLA01001079.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17480upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-5051"
BASE COUNT          186 a          105 c           95 g          222 t
ORIGIN      
        1 ccaactcagc cactaattgg aagtgctaaa ttaattaaac ctgaatatct ttatcatgca
       61 tgaagaatta ataaccagtt ttatggcagt ctcaagatgt ttcgacgggg tataattaat
      121 tatttttaat tgttcttggc tatgaattta aacctctgaa aatataatgg ctaggtgttt
      181 ctccaaagga ttacctttac atgtttctca tgcacagcac cctttgtgtt ctttaaaaca
      241 tatttttcat taggattcaa atgtaatacc tttttacccg gaggaactaa gttttgattt
      301 gctttgacaa ggtgtgaaag tgctttcttt atgttctttt ctttcatgct ttgcagcacg
      361 gcagatggaa gaaaagtctc taatccccat tctttcctgc aataaaagat atatatttaa
      421 ttttacattc ctgtgatgat tatttatcta aagactgctg gctatactgc caagtgaata
      481 aatagctgag gacaagagaa ttgatcatgt ccagaggttt gcaataaaac attgttttat
      541 atattcaaac tacctgttac ttaggaaaat catgctttaa aattacatga tcatctcctc
      601 catctctt
//
LOCUS       KCLA01001080             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17510upu ultra-conserved element locus uce-1751,
            sequence.
ACCESSION   KCLA01001080
VERSION     KCLA01001080.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17510upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-1751"
BASE COUNT          245 a          130 c          110 g          261 t
ORIGIN      
        1 ctaatgtgaa tacttaaata ttttaaaggc tgcacatttc agaatgataa aatacttaac
       61 tgattttcca ttcctgttga atttgtggtt aatgataaag taatttaatt ctctttgtct
      121 attaatgttt ttaacaacaa acaccagaag ttcttttaag gaaaattcct caaataaggc
      181 catacaatga cactttttaa ctacagttgt tttttattca gccataaaat ctatctttca
      241 tatagaaacc cacttacatg tcttacttca gtgaaggtta tttgtagact gaaggtcttt
      301 tcttgtcaag atatgatgaa taccatgtgt gaagacagaa gagcatcagg acctgtatta
      361 gccggaaaac ccactgatct gtgaataacc taaaaaagaa aacctgaaga ttagcaacgt
      421 cgcttttaag aatgatccat caaattcaac aagcagattc acagagatga atcatctagt
      481 tccttttatt ccaacaacac agtaaaggtt atttcccttc cttacaaata gaagttctga
      541 aatacaagaa atcgagactt gtgcggcttt ttcagtcata atgcaacgat tctacatttt
      601 tcattcaccg tgcttttaaa acattttttc cttttatttg tcaattgaag taggtatggt
      661 ttagcccatc cagtacacaa gctgtgtgtt tatgtctcat tttaagttaa ggttatatat
      721 tctgtaaaga ttaattcctc tgtcta
//
LOCUS       KCLA01001081            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17526upu ultra-conserved element locus uce-2521,
            sequence.
ACCESSION   KCLA01001081
VERSION     KCLA01001081.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17526upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-2521"
BASE COUNT          316 a          205 c          179 g          335 t
ORIGIN      
        1 cacaacctcc tgtaaagcct gtatttctga aataatttta ttcagcttct gagaatctgt
       61 attgtcacca ttcatgccta caacacaaac agatgaaata aataatatta aaggcatttg
      121 ctttatttta tattgatttc tgacaaaatc ctcagtatca atatccactc tattgtcaca
      181 cttgtctatc tggttccatg taaactgact atattgtatg aaagttaata taaaatcttc
      241 tcttggatga taacaaacac agtaatttgc atttaaatga caatgcaagc agtcatgaat
      301 acaacaaaac aacattattt gcatttaaat atagatttat aaatgacagg tatgctctat
      361 tgttcaggag gaatttgtta ttctttacat gttgttcttt tttcagtaat gtatttttat
      421 ggtaattttt gtaacaaagt cattaaattg tgcaattctt accagataca gccagtagag
      481 tgttagcatc aactggaatg gcccattgtg ctattcctag aacaaacagt tctctccaag
      541 catcttccaa aagcatcagc tgtcatacaa tagatgtaca atataacata gtgtataatt
      601 tatagattta taaacaattt aaagatgtaa atttctgtta ttttaaaaac tactttacat
      661 gcccgtcgtg gtattttccc cacagcattt gttagctttt ctcttagctt tttgagaagg
      721 tgtctagaaa taagtctgtg catcgcagaa agccacggag agttggctcg ctgtgcaccg
      781 ctgcggacca aaagggtgga gaaatgagag tgaggattcg cactccagag agctggctca
      841 cagcacaagc tcttgcctac atttcagtga ggactctctc ctcctctccc atgcacatat
      901 agcagtccta ggacaagtct gactgctgct ctcctattgc tctctgggaa ttaccctcct
      961 ttcccttgtg aagaaaagcc tggacaaggt cctgaacttg gagaactcta cagagggcag
     1021 tgctttggag cacat
//
LOCUS       KCLA01001082             465 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17542upu ultra-conserved element locus uce-2439,
            sequence.
ACCESSION   KCLA01001082
VERSION     KCLA01001082.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 465)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..465
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17542upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>465
                     /note="ultra-conserved element locus uce-2439"
BASE COUNT          153 a           95 c           90 g          127 t
ORIGIN      
        1 tatcctgttt aaccatcttt taagaaaatt aaaaaaaccc acagagcttc tgttccacca
       61 gagctccagc aatgaaattg tacagcaaac ggtttaacac aggaattatc tccccccggt
      121 tcaaggttta gagcttcaat tgcactataa agcaccaagt gatcacagaa caccaaaaat
      181 actgggtttt gaagcaataa aactttagag tgcagttgcc ctcccttaaa tttattcatg
      241 aacctacgct gaaatgtatg gctcttttta cacagcgttt atggcttaat tcaaatgaat
      301 gtttctggct aggcacgagt gcctctacac actcaagtat aattcagaac ttcaaatccg
      361 ttaacagatg gtttgctgtt tctcaatagg ctgcctgact tggctacagt aaccagggag
      421 ggggggaaga gggagaaata aatgaagggg tcataataat aataa
//
LOCUS       KCLA01001083             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17558upu ultra-conserved element locus uce-7657,
            sequence.
ACCESSION   KCLA01001083
VERSION     KCLA01001083.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17558upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-7657"
BASE COUNT          259 a          168 c          173 g          224 t
ORIGIN      
        1 gagtgagaag aggaggtaca agactgcaag ccattgttac aaaaaaaaca catacaaaga
       61 tgaagaacag tctggcctca aaattctttg aaagtaacta ggtaccgagc acattaaatt
      121 gcaatcttta atgagacaat ttatgtagag cttttcaagt tcacagttct ttatttgttg
      181 atatgctttg ctgagatgag gcacctgcct ctacaggagt tacatttcct tcccttcctt
      241 ccccccatac acataccaca gcaaatctga agggatattt caatcaccac tctgataaag
      301 gagatcattt tggcatacag gtgatctttt agcagattaa gggtatttac tttcttcctg
      361 aatgatcatt cccagagata ccagcacaac gcaacctacg caattagttt tcacaggtgg
      421 ctgttttgcc tccagtaaaa ctgctttctt tctcctcctg caagtcatag cagagcaaat
      481 gtatataaaa acatttcaga tatgaaataa acactttcat aaaagcagct gtgatgcaat
      541 gcatcatttc tgtctgacct gagctacgga atgaactttt gttgccagga tcaaagatgg
      601 taaggagaga gtggaggatg ggggacaggg cagagctggg ggaagaagag ggctcagaat
      661 agcacagtgt aaaataacct caaatactga aagggtaaat gccagtttgg tgcaagcaca
      721 ccctctctgt gttctctgct gcacaatctg tgcaatcagg ctcatgctgt gtaagataag
      781 ttgtccacaa tttaccctgt gagtccaaga gttacagtaa gaca
//
LOCUS       KCLA01001084             881 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17572upu ultra-conserved element locus uce-166,
            sequence.
ACCESSION   KCLA01001084
VERSION     KCLA01001084.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17572upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>881
                     /note="ultra-conserved element locus uce-166"
BASE COUNT          286 a          133 c          171 g          291 t
ORIGIN      
        1 aaaggctgat ttctgcatta ggttttccac aaagatacag ctgtatgctc taagtacatt
       61 aaacagaaag atggttttag ctgcctgtct tgcagtagtg tgtggttgtg tgatagcctt
      121 ttgtgtctga tttccagttt tttagtaccc tattgacaca gaaggtaact agattgttct
      181 attagtgatt tctgacaaac agaaattatt tgatatgcta aagctatttc tgacagaaga
      241 tacaaagttt tgacaaacat gcatggcaca gcaagtgtcc aattctaaag agcaaaataa
      301 atgcaaacca ccattatggg gaacacaaac agcctgaaag caagttatca gtaagcaaat
      361 aattgttgaa ctgttatgaa tggaatagga tgttgaaata gggcatgatt ggctgatgtt
      421 acatatgtcc ttgattacct tccttgtgct tttatcctaa taagtgacat tctttgtatt
      481 cccttggatg gctagacagt ctgacactga agaagaataa atattgcatg tggtacacat
      541 taagctgtca tctgggacag catttataaa aagtaactag aaaaattcat aagaaattct
      601 gcagtgctac agtttcctgg ctccagtcat aattgtcaaa gttcttgaca cattgaggtc
      661 ttctaaaatg atttgggttt acagttactt ggtgtatgaa taattattga ggattcattt
      721 tctctatgat gctgactgct aatgttagtt ctcaaaatct tgcattttca ttaaagactg
      781 tgcagtaaaa aaatcagttg tgctgtgtgt agctagtcct cttactggaa acaagagagg
      841 tgtctatata tataaaaata taaatataaa atgtaaatat a
//
LOCUS       KCLA01001085             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17588upu ultra-conserved element locus uce-4564,
            sequence.
ACCESSION   KCLA01001085
VERSION     KCLA01001085.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17588upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-4564"
BASE COUNT           99 a           68 c           99 g           97 t
ORIGIN      
        1 agcgctcgtc tcagtgacga cgggagcgct aatgacagct gagaagggcg tccctgggag
       61 gttaaactgg tttaattagg atttatgaga gggtgaggct aagagtgcag cgagatgtga
      121 aggggttaag ctggaagaga ttgcgctgca gtcagtgttc tgttaaagtt ggaattaatt
      181 tttcccatgg gtttttcaca ttctaatttt caactaaatg agacatctgt ttcagaaaag
      241 gaaaatttgc tctggttgtc atagcaacta tcgttctcta agaaaattat tccgatggtt
      301 ccttcagaac agaaagagac caattcggcg cagaaagcag cctctgatcg cggcgccgcg
      361 ccc
//
LOCUS       KCLA01001086             788 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17604upu ultra-conserved element locus uce-370,
            sequence.
ACCESSION   KCLA01001086
VERSION     KCLA01001086.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 788)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..788
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>788
                     /note="ultra-conserved element locus uce-370"
BASE COUNT          266 a          154 c          154 g          214 t
ORIGIN      
        1 ctaaagttag gaaacaagga ctgggctcac atgtcagaac taggaattac tcttggttca
       61 tttaaactta attaacctgc aattatgatt aactcagggg aaaaaaatct ttccaaatta
      121 gatacaaaaa tatattattt cctaagtctg tccaaagttc ttattatgtc aatattaaaa
      181 ttcataaagc agcactaagt ggcctgaaac atctctaacc ttgacagttt ttttcagggg
      241 taataataat ccgcagcaaa tgcaggccaa ccaaaaacca cttaactaat tagtagttgc
      301 agtcaccgag aaaacatgaa tcaacactgt tattacaagt ggcacatttg agtggcatct
      361 aattatgact tgatgagcac gatacttgca ttatcaacat tactactgca tcccatcagg
      421 gactaaaagc cgctgatggc attgactgcg agaaactccc actcaatggt gctgcagcac
      481 ccaacaatct ccttggcagg ggcaccctca ctaaatgaca tgttaagcgt aattactggt
      541 agacatcgta aataaacagg attggaagtg aaaattgtac caagtgcata agacacaatc
      601 tgacacattg gaagtggcag ccttaattga gagtttcttt gactgctcaa gatcatttca
      661 actgcatttc tcggaggaca gtgattataa ctgtggagac agacggcata atggtatcag
      721 cactgctgac agagcagtga attaaattgt atctgctgtt gtgtgaaagc cttgatgaga
      781 ggtacaga
//
LOCUS       KCLA01001087             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17620upu ultra-conserved element locus uce-4119,
            sequence.
ACCESSION   KCLA01001087
VERSION     KCLA01001087.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17620upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-4119"
BASE COUNT          242 a          182 c          234 g          245 t
ORIGIN      
        1 gaaaaaagtg ctccctaatg tccagcctaa ccctccctgg tgcagggtca tgaattgtta
       61 aggtgatgtg actgggagtt tggaatgagg taccctggtg gatgagttct tgagctcaaa
      121 gagaagagat aacaaactgg atggactgtt cacctaactc gagaaggttc attgatggga
      181 agggccattc acagtcaaca gccactagcc aacttcattt ctaacccaca aagtcagtgt
      241 gattgggtga accttagcgg ggtacctacc ttgggcaagt agattgatct tggttgaagt
      301 tctagttcat cccagagaaa agagagtcac tgaagcagaa tgccctcctc ctgaaaaggg
      361 agtgatttac atttagcatc tgtttggggc tgagagtggg aattggcttt gtaatttctt
      421 ctgtcatgcc actgtcagaa aattaagctg tttacgccag actctagaag gttaatggct
      481 gttctagcaa aggtcaagtg gtcatttaaa gggaggctgt gctgaataat caaaaatggc
      541 agaaggataa ggtataaaat cctaactgac ggctcatcct accctctttt cccctgtcat
      601 atcgaaacct gactttgctc tggagaacct ggaagagcga gttcatgtga atcgctacac
      661 ctgaaaagca ccgtaaagac atcagtgtat gagcttcatg gctccaggaa catgcataga
      721 agaaacaaaa ttgagcttgg agggctttcg tagtcatttg gggttttctc atttgtcaac
      781 tgcttggtgt gctgaggaag atgttacagc tgctgattgg tgccagccct ctgcttgtat
      841 ctgccaaggg ctccgtgccc ctgattgact gggtgttagg aggaatctct ttcctgaaag
      901 ggt
//
LOCUS       KCLA01001088            1173 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17636upu ultra-conserved element locus uce-5679,
            sequence.
ACCESSION   KCLA01001088
VERSION     KCLA01001088.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1173)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1173)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1173
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17636upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1173
                     /note="ultra-conserved element locus uce-5679"
BASE COUNT          406 a          242 c          190 g          335 t
ORIGIN      
        1 aaataatgaa actacagcaa tgaattatat tgcaagaagc tcatttatca gctgcactct
       61 ccactgttag tcccctcttt caggaataca actaaacacc ttcggcaaga gtaagaaagc
      121 tatgtccaga atggggaaaa aaccttcaag ttctcctttt aatacagtat ttgcatttcc
      181 tattgtttag ctgtttcagc tccaagtttt ctcagcacac attcctgcca tgaacactgc
      241 aatcatttgg tggcacctgt ctttgcattt acatttgcct tagaagtctg ttaccattcc
      301 actgctctgc actacagctg cctgcaaagt ctcctacaca gtaggaaata ttaaacacat
      361 acctcttaaa gactcgaatt gcattgaaag taacaaggcg attattatgt agtgtttagt
      421 gcattttaaa cgctttaaag atatctaagt ctgggcagca ctgcaaccct acatacagtt
      481 gaaagaaaat tccattctgt taacatcagg tttacagtat tcacacaata cacaaaaagt
      541 ccttttcact atcttgaaaa tcaaaaacac aacagtaagc ttaaagatta caggcaacag
      601 cattcaaaca tggatgtggg tagagaaagg agtacctggc atgagtacct gcttagtttg
      661 actgaatcct tgatttttaa tttggctttt catgggccgc tcacaacacc aacgctgtgt
      721 gaggtatggt agtcagctgc aataattcat aaaccctaca cttccatcaa tccaatgcta
      781 ctggctctcg agttacagaa caaactgcat tagaatgcaa ggcaataaag caaaaaaact
      841 agaaacatcc ttgacaaaga aatactagca gtttatatga aaacaaagta gtccaacatg
      901 tgcctcaaat attaagtatt aaagcaaaag tttctgctga tgtaccaaca caatatggac
      961 ttaaatacaa aaacagttca actttttttt gataacaaaa ttcctaaaaa taaaaaagga
     1021 taattaattt ttctatggtg actatattac aaatatgtcc caaagaggca cactaatggg
     1081 ggcacgagtc tgctacaaaa tagctgagac aaaacaatgt acctcaaaat gttttgcagg
     1141 actacactgt cttttccttc agaaggtgct tta
//
LOCUS       KCLA01001089             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17651upu ultra-conserved element locus uce-4616,
            sequence.
ACCESSION   KCLA01001089
VERSION     KCLA01001089.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17651upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-4616"
BASE COUNT          159 a           79 c           83 g          140 t
ORIGIN      
        1 tctttccaca agattgctac agtcagctca attattactt ttgtgggatg tcttgttcgt
       61 ttccaccaga cggaagtaat ataaaattat gtaaatcagc tttcttgaag taaagaatca
      121 tggaccagtc aataatgttt atgcattaag aaagggcagc tcctcctgga agaaataaca
      181 cagggagccg atcctaagta aacatttcta aacagacaaa gggctggtcc ctgcagcaca
      241 atatattatc atatttccac ataattagtt tgttttccac ttgaaatcag aaaacgattc
      301 gacattgcat tctgtgcctc aggatggtgc atacagtaca attctcatgt gcaggttcat
      361 atgttgaata attagtaaga attaatctgt tgaaattaaa gtttggaata ttatagaact
      421 catgaatagt gcatggaaca atcaagtaaa ttaaaccaga a
//
LOCUS       KCLA01001090             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17665upu ultra-conserved element locus uce-6824,
            sequence.
ACCESSION   KCLA01001090
VERSION     KCLA01001090.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17665upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-6824"
BASE COUNT          161 a           84 c           98 g          117 t
ORIGIN      
        1 tagacgttaa ggctactcta caccactgca gcagtgggga ggagaaatgt aggagcctca
       61 ggacctgaaa agtacacgga agaatttata aaaaatcaga ttgaagagtt caacctagga
      121 aagagacatt tagccaacat gatgggagaa gatccagaaa cttttaccca agaggatatt
      181 aatgtaagta cagttgctct gttggaaaag taatttactg tagagttgca gatattgaaa
      241 gcactttact tcagcatgag cccctcagct ctctgtgaat tttaatcaaa ctgtcagaat
      301 aagaaagaat gctactatac attgtgaaca ttgcaactgt gactgtgaat agagatccta
      361 cccctgctac cacatgaggc cagacatcac agtatagagc tgtagaacgt atcttgctaa
      421 agcacagtag gttcttttta aaagtactaa tggataatcc
//
LOCUS       KCLA01001091             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17681upu ultra-conserved element locus uce-939,
            sequence.
ACCESSION   KCLA01001091
VERSION     KCLA01001091.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17681upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-939"
BASE COUNT          177 a          136 c          107 g          146 t
ORIGIN      
        1 tttgtagcag actgtaaact ccagagagat ttatgctaat taagtggctt gcttgcatca
       61 tttcatggaa atgcaatgac aaaacattgc tgttttaaaa atccctttgc ctctcctgct
      121 tccaccccca aaatatattt tacattctaa gcagcactca cctagcagct tccaggagtt
      181 cgtccttctt gtattcacct aaatgattgc aaaatatcat gctgttagca tttggcagaa
      241 gacagattaa gaaatgcagt acgaagcaaa tacagaatta aaacagagaa gacgagaaaa
      301 aagcccacac cccgctgggt gatgaagctg tgacgttagc cagcttgtag aggcagcatc
      361 accagtacct tggagacggg cagcaaattg acgcatcttc ttgtccaatc ctcagatgga
      421 taggctttct tcggacaacc aatgactgca aaatcttgtg tccagaaaca cagtcccgct
      481 gataacagca tgtcagccaa agacaatgtc cccaccccct gccctattca gtatgtcaca
      541 ttatacttgg gaagcataat aaattc
//
LOCUS       KCLA01001092             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17711upu ultra-conserved element locus uce-1205,
            sequence.
ACCESSION   KCLA01001092
VERSION     KCLA01001092.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17711upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-1205"
BASE COUNT          202 a          171 c          168 g          295 t
ORIGIN      
        1 cttttgcctc cttggtcttt gcagttgttt gttgttgatt tttctgtcct tagtctccct
       61 agttgtttgc tgttgactgt tcagtcctat ataaacaggg cttcgtctct ccaacctgac
      121 cgctcaactc tactccgcgt ggagcacttg ccatattttt ctccttttcc tgcttgtgtt
      181 ccctctcggt tgttgactgt gactggaaaa taggcgtaca aagcattttg cattctctga
      241 atgtaccaca cagtaattct gctgtctgaa aactctgtaa tgtcaataat tgatgcactt
      301 gagaagtggt aattaaatta gttaattatg ctggtaaaat tacatgcaat tatgtgactg
      361 cagggtatgt ttagtaaatt aggctttccc atactcacta catattgtgg tgccaatttt
      421 gttccttgat gattaggtag cttttgatac ttcttaattg atttaatacc tggatcttca
      481 ttagccttcg attgctatgc aatgtatgtc tgacattttt ctctctgata tttcacaggg
      541 tatcgttcat caaaaaaaaa aaatcaatct atacgtgcgt acgtattcct gtcagatgtt
      601 aaagcgtgga gacgtcaggg gaaacgctct cctctccacg tgtcctgtgg tgacttgccc
      661 gctagtgcga gatgccaatc aactagatgt ccctgggaac cctctaatat ggaatgactg
      721 atttcattta tgcttctctt gaaagatcca aataaatagg tgtctcaggg aagattggca
      781 cggtgacagc tgttttaatg acacctgtta tctttgcaga gcacagtgaa aggtta
//
LOCUS       KCLA01001093             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17726upu ultra-conserved element locus uce-345,
            sequence.
ACCESSION   KCLA01001093
VERSION     KCLA01001093.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-345"
BASE COUNT          220 a          111 c          115 g          185 t
ORIGIN      
        1 tgcccttcct attttaaaga cagcctatag cagagcttgg gtaggaagca gaagggaagt
       61 atcatggcag gaatatcagt gtgttttgga tgcaaagcag gagcttatct gttttactac
      121 tgcagcacca gagaaaatca attttgacac agaactgcca ctttacaagc aaataactat
      181 actttccaat aacctaatct gtgcaaagcc tactgaaaat tccctaaaga accagtagtt
      241 aaaacctcca ttaaatcaaa gggtttaata tgggaaggga agagaggatg cagtttgact
      301 tgggaatgta atggactcag tggggaaata aatatgttgt tttatgtgta cagttacaga
      361 atttgagaac acagcatcca tttcaaaggg aattctcttg ctgtgcaact tattcctaaa
      421 cagatgtgat ttttgcttat tcaaaaacat ttaggtaaca attacagcat aataaattat
      481 aattgccatc atcttccagc tatgctatga cttctatgca aacacaaaga aaatgcaatt
      541 atacagaact gtaaatccta ttttcaggta gcccagagca ctgacaaaac acttgtttat
      601 tttatttgga atgaacaata ctttcaaatc t
//
LOCUS       KCLA01001094             925 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17741upu ultra-conserved element locus uce-24,
            sequence.
ACCESSION   KCLA01001094
VERSION     KCLA01001094.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17741upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>925
                     /note="ultra-conserved element locus uce-24"
BASE COUNT          319 a          166 c          165 g          275 t
ORIGIN      
        1 ataattaaat tttccattga ctatggaaac cataggaata caacgataga aaattaataa
       61 acgcatcctg aagtttattt ttcccctgaa aaatgtatta gaaaggtcac tgtgatcaca
      121 gaaaagagct aggaccgctt cctgatagca cctggtgaaa aaatattata tataaataat
      181 caaaattttt tcacccccct taacccctca agcaagagaa gacctgcttt tttatcttgt
      241 taatagaaac cgcaatctct cattaatatg cagggctagt atgctgcttc tcaagaggaa
      301 aacctgcagc aaggctttgc cattaatcaa cttcagccca gcagttcagt gagacatgat
      361 gatacatgtt tttaactcta aattaatgaa tatctttacc aactgtcaat aaatgaagaa
      421 aaacactggt gaggaacaca agttgaggtg ggaaatttcc aaacacaaca gagtgatggg
      481 gaagtgggca actaacaaga ataataatgc tgtcacacac aaacaaggct taacatgatc
      541 caggccctac tcaaggaaag ggttgtgcta caatgataaa tctgccaaaa cctaattatt
      601 tttgacacat tagatgcatc agggaatcgc tgtgaaaaaa aattccttat caagtagttt
      661 ttgcattaga aagtgactga acctgccagc catctcttgg gctacactct tcaatgaaag
      721 aagtaacttt gaattttaaa aggtacagat tgctttaata ttcattgcaa aataacttat
      781 tattcaaacc ttattgggga ggctctcagt tttgttttgt tttgcctttt ttttcatttg
      841 gctgtagtat attattcatt tttggaagga ggctatcaag aatactgaaa tgcagagctg
      901 tagtcaagag gctgcatttt aacta
//
LOCUS       KCLA01001095             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17757upu ultra-conserved element locus uce-1512,
            sequence.
ACCESSION   KCLA01001095
VERSION     KCLA01001095.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-1512"
BASE COUNT          289 a          153 c          157 g          261 t
ORIGIN      
        1 aaaatacata taccgcggtt atcgtggaac atcaatatct gtaatgaatg ggtttgtttg
       61 aaacattaca gaaattaaac cgtatttatt ccttggccct ttcaatgatc cttgtcatct
      121 aactaccatt tataaaccat cacttgtgat tttatctgct acttttaaag ttatgaactg
      181 atcataacaa tccattcaat aattaggaga ttacaagttt ctgtgtttta acagatctat
      241 ttcagtgtta gcagacccag agctgcatgg aggagaggga cattccatag tgtgtccgtg
      301 aaggaggtat agtgaaaaat aataacctat tagcagtcca taaagttcaa tataaaatat
      361 gtttgtgcta aagtgttaaa caagtagaac aaatagcgta ctagtagcat acaaaattaa
      421 aacgagtcac aaatggatat tttctatggc aatttatttc acaattactc ttgtggaagc
      481 tttcatgaat taaatatgag ttctatcttg aaattaggtg ttataaggct aaattacaag
      541 aggcagccag taattgaggt ggctgaaaca cggggtctag tgaactaatc tcttgccgtg
      601 tcacgtggct gtcctctcgc caatgggaaa cctccccatc acaaaaacag aggcagctga
      661 gaaaaattga tttctcatct gagccatatt tgatagcttt tgaaatcgaa aattgaaatt
      721 aactaaccta agccccgtcg taacaaaaga gcaaattaaa tatgcaacgt ggcttcctat
      781 tggcagcaag agggcctgcc aaggtaaatt tgtaaataga gtctaagatg caatcctttt
      841 ctcctttctc tcactataaa
//
LOCUS       KCLA01001096             868 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17771upu ultra-conserved element locus uce-6479,
            sequence.
ACCESSION   KCLA01001096
VERSION     KCLA01001096.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17771upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>868
                     /note="ultra-conserved element locus uce-6479"
BASE COUNT          254 a          174 c          167 g          273 t
ORIGIN      
        1 atctcactac agctggagat tcccattcac atcaaaaatc aaccacagcc ttttcagctc
       61 ttgagcataa ctgttaaagt caatggacta ttgtgtctat gggctcaggg cagctagcca
      121 gggagtacag ctgagcattg cccttctcat gaggctgaac aatatgttgc caccagcatt
      181 atgtgccttt cagtgttctg caaggcacgt gataccctaa ccctgtgctt aaagggtttt
      241 gttaatgaac caacggtctg aatagtgctc aggtgtaatt cccaaggacc agcctggttt
      301 tgcatggcac tctcctttgg acagaacatt tcttttttgt gaaacactgt gcagggggta
      361 attaaagtag cctgcttcta cagcacgttc tgtctgtttc ttcttttcat tattagaagt
      421 gatgacacat ttgactgtgt ggcttcccac agatggcact gaaattctgt gatcaaatgg
      481 gaagagcaaa ccagctgtca gctccaatca cagtaccagt attgctccac tggtgtaggg
      541 gccctgcttt aataacctct gcagcaaggg tgggttttga gaatgaggtg tctgattaga
      601 aattaacaga ttcaaggcta cattaagaag ctttatgttc taactatagc tttgctttgc
      661 aaacgcttaa gagtcaatat gtgaagaatt ccatcttttt attccccatg acacttgatc
      721 ttttaaaaac tgaaaaaatt cacttaaaca tttcaaaagc acatgtaaaa attactggaa
      781 tatattacag taacttattt tataagcatc ttgaaatata tttttgtaag actttaaaaa
      841 tctttgctaa aaactaaagt atttaatt
//
LOCUS       KCLA01001097            1022 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17801upu ultra-conserved element locus uce-1985,
            sequence.
ACCESSION   KCLA01001097
VERSION     KCLA01001097.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17801upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1022
                     /note="ultra-conserved element locus uce-1985"
BASE COUNT          300 a          224 c          209 g          289 t
ORIGIN      
        1 agggctgctg aaataaatca ctccctggaa ataatattca aagaagtcag caaagtcttt
       61 caccgcgtgg attccagcgc gtgagtagct gtgacaccca gacagacaga cacattaacc
      121 tctcagaaat ccacagaatc taagcccttt aagcgtcacc gcattcaatt cttccataaa
      181 aagaggcatt aaagctctcg atcacaagtg gtttcatatc gaaagcctcc tccattgaca
      241 gagtggtgtg gagcaggagg aagaaggagg agagcagaca tctatcctgt atgtatttgt
      301 cttattaggc tgggacgatg attattttta ctgcaggctt cccctccgcc cgccagcgag
      361 cgggtttggt ctccagcgtt gctcagggca cgcgcgcacc gacctcggtg ggacgcgggg
      421 ctctattaag gcgccgttca atagtttggt gatattcaga caatattgaa acactcccaa
      481 atgaactttg cggggagaca ttttcattcg ctgcctccct cctcatgcat attaacaaat
      541 ggtatgcaag gcctcattta attcactgat tttacattcg gatcactttc tcttttacag
      601 ctatttttac cgggcttcat taatctttgt tgaatacaat ggcatacatc tttaatgcgg
      661 ccgctgtcaa gtcatatttc agtaagagct gcaaactgaa tgacagcaag caatattaat
      721 aaatttaaca tagactatat caatttttaa cagaatgaat gtggaaagct aaatgtatta
      781 tttttcattt aaatcatagg gtttatcacc ggttaagtag cagcgatttc gggaaacttg
      841 tgacgtgccg tacaaataga tttacatctc attaataagt aaattaggca aatgcctttc
      901 aagttcagac aagtacataa gtgtaatctc catattaaag gagtagtctt tgataaacca
      961 ccgaggaatt gcagcagcca actatgtgac atgttgccag tgcctgaact cttccacatt
     1021 cc
//
LOCUS       KCLA01001098             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17817upu ultra-conserved element locus uce-5969,
            sequence.
ACCESSION   KCLA01001098
VERSION     KCLA01001098.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-5969"
BASE COUNT          246 a          162 c          145 g          320 t
ORIGIN      
        1 tatattttcc ttgcatttgg tttaattggc ttttgttttc cttccctcca ccagtctcgc
       61 tttcctccag aaaaacacat aaatgcttac cctagcataa ttatgcgtat gcattcttat
      121 tccattagta attccggttt aattatattt atcacttggc ccactgtata tttgtgtgac
      181 tcagagtaat ttaaaagtgc ttaatttcca tgggtttcta ctctttttgt atagataaat
      241 tagggaagct tgagagactg catactggaa attgaaacga ggactacgca atccattttg
      301 agacttgcct tttggtgttt acatcaaagc atgcttctgt gtgcgtgctt gatttacatt
      361 tagcaatatc taagtgcaaa tagtaatcat acaccaaagc aaatcggact ttatgcaatt
      421 gcttcctctg tttcttcagt tgcatttgta atcccacaga ttccaatctt gacaggtagc
      481 ataattagaa aattctcttt gtcttattat atgtgactct tctcaataga attcacttca
      541 ttgcaggcga agaacagaaa atatacttca aatctaaaac gggaaatcaa gggggactgt
      601 tttattttta tctgtctttg tgcaagcgac attattatca aaggatattg taatgctgaa
      661 aatgtacttt tgggatttaa atcacgtatt agcctggaaa gcaaaaagtg ctgtagggct
      721 catgcaatat attttctcat taatctgatt gaaagattat ccttcctata gctatgaaaa
      781 gtctattacg catatatcca tctttcttgc tagtaaaatt cagctttgtg agtcgtcatt
      841 gtctcttgtg tctgaggacc tacactcttc ttc
//
LOCUS       KCLA01001099             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17833upu ultra-conserved element locus uce-458,
            sequence.
ACCESSION   KCLA01001099
VERSION     KCLA01001099.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-458"
BASE COUNT          131 a          110 c          110 g          134 t
ORIGIN      
        1 gtttaaaagt ggcattgtcc atgaaaagat ttagtgaggg atgaagaaat ttcttgaacc
       61 taaagacata atctggtgat ccaattctcc ccactgtgtc cattcccgtg aaactccatt
      121 tactttctcc tatccgtcac cagctccccc gcatcccacc tagccaatcc tctaggtttc
      181 ccacattgtt tccccttttg tcttttcagt ccaaacagaa gaacaacaga caaggtttcg
      241 aagggcaggg agcatcaggg gctggaagag aatggctaag atgagggtca gagtcctagc
      301 cctactgcca acagttacta gggtttgtgc tgcctggctg ggcagtgttc aaagactttg
      361 ctgggctttg ttccactgtg tagggattag gcctggcggt ctgagaattt gccttctaat
      421 taaaaaggat aaaagataga agtagcatta gactaaaaca tagcagtgat acttcacagg
      481 ctttt
//
LOCUS       KCLA01001100             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17848upu ultra-conserved element locus uce-4784,
            sequence.
ACCESSION   KCLA01001100
VERSION     KCLA01001100.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-4784"
BASE COUNT          244 a          121 c          128 g          297 t
ORIGIN      
        1 ttctaagagc tttttttata atttacagaa gtaaattatt tctaaatgaa tttaaaaaca
       61 ttataagaaa attaattgta catagtaaag gaagatcttt ctagagctaa gacaacataa
      121 tttaaaagac attttcatgt tctaaaatac cgttttgctt ttgttgcaat tgagaaacga
      181 aggtttcttt cacataatgt atattccaag atgatttcaa agcactttca cttagaaaag
      241 ctagctgcta ttacatatga attttcaaag cttgccaagg ctttggaagg aatgatgaaa
      301 attgctattg cacgaccttc aggttttctt tgtttcataa aaggctaagg tagcattttt
      361 gtcatttttc tttcagctca ggtctttcat cataaatatc aaagcatgca attacgcctg
      421 ctcatatcct accatattct gcctgtattc gctctgtagt gatggtgttc tctttcagga
      481 tacatttttc ttttgttttt catgaatctg aaagaagccc catgtttttg ttgagtgcca
      541 taaattgttc atgaaatgca tgttgtactg attaaaaaga aaagttgatt aaaatgactt
      601 ttattctttt gttctaagca aagtcctgaa gtaatattcc agtgacaaac ctaacaggtt
      661 cataggagag ggagatggcc tacaggtaga atttttaaat agtgctcgtt gtgaaaaatg
      721 aggcatactt ttctttgatt aaaatctctg ctttcatgct aaattatttc tgttgctcct
      781 ttttcatttt
//
LOCUS       KCLA01001101             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17864upu ultra-conserved element locus uce-7038,
            sequence.
ACCESSION   KCLA01001101
VERSION     KCLA01001101.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17864upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-7038"
BASE COUNT           84 a          103 c           90 g          117 t
ORIGIN      
        1 ggcgaagact gggaaggctt ggtctggtgt tatttacctg ggactaaact caggcactgt
       61 ttgctaaaat agaagccagg cttaaattga ttcctggtgt ctatatttca tgttgaaaat
      121 tggcttgtaa atccatgttt tgatctatga gggccgtctc cttaagaaaa agcaagagta
      181 aatgtgtaat ttctcccttg acagcacacg gcgcagaggc gatccttctt cccgctcccc
      241 tccgtttcgg gacagctcca ctcgttccga ttaccactct ttcttcctcg ccccacgcct
      301 tgatgtctcc atttcattac cgcccgccca tttatcaagc tgttaccgta agggtgactt
      361 tgcccacttg catgtggcag tggggcctgg ctga
//
LOCUS       KCLA01001102             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17878upu ultra-conserved element locus uce-4190,
            sequence.
ACCESSION   KCLA01001102
VERSION     KCLA01001102.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4190"
BASE COUNT          195 a          135 c          112 g          167 t
ORIGIN      
        1 aaagaaaaaa aaaaggaaaa aaaaatccct cataactcct tgcctgataa atgataggga
       61 aagtttgaca gatcagaacg atacgaagca gcctaaaaca tttggcacaa tgtgtgtctg
      121 gcatacagag actgcctgtc aaatgcctat gactccatac agcagctagg gaccctatgg
      181 agcagcagat ggaccattaa ggtagtatta atgtagatgc catcagtttt cagttctgac
      241 tgggacatac tctttagaac tatgagcagc tgctgccatt tattgtgaca gcttcctgct
      301 aacttttgcc aactggcaca atctgactct ttgtacctga gctattaaat gtgtgacttc
      361 caccgtttta ttcctccaga gaactctttt aataatcctc tgaagaagga atgaagcatt
      421 tatcaccaaa gtgaatacac ataccataca gttctattgt ccttcctcac tgctgtagat
      481 tatacatcag gagtaaacac gaccgagcat cccgtgcatc acatagtccc caaaatagga
      541 aaaccagtga gtacttcaac tgtatttaaa tatgctgtat ctcaactact gctttgtggc
      601 ataccttga
//
LOCUS       KCLA01001103             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17894upu ultra-conserved element locus uce-5260,
            sequence.
ACCESSION   KCLA01001103
VERSION     KCLA01001103.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-5260"
BASE COUNT          274 a          194 c          184 g          276 t
ORIGIN      
        1 aaattattgt tgcctggcat tgcacttctg actccacagc tacattttat gaagctcgtg
       61 tgcaattagc cagtttgtta ttttatccta attttataat aaatcacttc actctttttc
      121 actcatccat catcaattta tctgcctgca agagcaaggc tggaggcacc tgctcctgcg
      181 caggggcacc atgtttcaac tgtcaggtgg catccatccc agcctctcct tgtcagcaat
      241 aaagaaaatg aaattggact aatatgaatc tcatttctgc cctgattaaa ggcctgcatt
      301 ttccctaggc attgcctgac caggtcctga cttgtgagat attcaatgct cttgtaatgt
      361 cattcggaca gagtgcgcct gtctccttag gtcattgttc ttcagattca cttgttttac
      421 atggaatata ggctagaaaa tctagacttc ctttggggtg ttaattaaga ggagcatcca
      481 aaattaatca gcaaattcac tagggcgaag gggagctgtc tgaaggcctc gatataaaat
      541 gcacttctag tgcagagaaa tgagccttcg gctattgaca aagagaaaac aagtgcacag
      601 acggcaatct gacataaaaa ttcatataca tatacaattt tacattcatt ttctttgtca
      661 gcttgtcacc tttaattata aaggttgatt cgctgtttgg cagatctgga aattgtaaac
      721 gcttggccat ttgaatatca tcatatggtc aatgtcttca aaaaagaatg acacaggagc
      781 atcctaggat aggaacatta taaaatccaa atggaacttc gacgatgacc aactcaaagg
      841 atcttgctgg tcttagggac aactggactt ggctacgaaa acacagaagc tttgacggtc
      901 cgcagagaaa gcactgtatt gacaagtt
//
LOCUS       KCLA01001104             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17909upu ultra-conserved element locus uce-2920,
            sequence.
ACCESSION   KCLA01001104
VERSION     KCLA01001104.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17909upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-2920"
BASE COUNT          282 a          147 c          137 g          267 t
ORIGIN      
        1 ttagtatcac tatagcctag atggatggat gtatttagga aacgtagttt ttcttgaaat
       61 ggagaatgct taagataaat taaattctta atattaataa tgtgaatttg ggatatttca
      121 gtttcctttt aacacaaagt tatgtgaatc aggttctttt aaatcctata caattttccc
      181 taattaaaaa ctattatttt aagattccac ttcatgttct tataaacaaa aaagtatcag
      241 gagtgatacg cacataagat ttgcaagtta cctcatttaa aactgaaaaa cagcacggga
      301 gacagagaaa gcactgcaaa tgctttatga gaagtattgc tataattcta ttataaaagt
      361 tactgctata ctgactactt atggtctgct gctaaggtgc tcctgttata taccctgtgg
      421 tctaccattt gtaaacacat ctttttgatg tttctgccaa catcctggca acaaagcagt
      481 ccaatttcaa atgagctaat taacttaatt gttgatgaag catgaaacag ttcattcacc
      541 ctgttagctg caccatgaca acacaagagt ctcagcccct gaagttactc atctatataa
      601 gcctatctgt agccttccat taagatctat tgcatgccaa aatgagcatg gcttttctga
      661 caaagaccag ttcataaggt acacaggtaa aaaatcaggg ctgttgttaa aaattgaagt
      721 aaatacagaa atactagttc tctgctttag ggaagcaaaa gccctgtcac ttattttcta
      781 aatgttctga tttggacaac agcaggcaaa acaaaatgct caaagttttt gca
//
LOCUS       KCLA01001105             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17925upu ultra-conserved element locus uce-7756,
            sequence.
ACCESSION   KCLA01001105
VERSION     KCLA01001105.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17925upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-7756"
BASE COUNT          129 a          153 c          134 g          170 t
ORIGIN      
        1 ccccaccccc tctagggagc attcaatcct ctctttgatg gacgtccaag aaaatacttc
       61 ttccacatct taaacttgtt agcaccagtt aatcttctta accttcttcc cctctgaaca
      121 cacactccaa tgagtttccc attgctggca gctgttaaag acacagcaat gcttctcaca
      181 gtggcctttg cagatgagaa gacggccatc aattattaag caccccagct gtctcccagg
      241 tgggagagca agaacctgga tctcgtgctg aagcctcttc gaagcggcca tgatgtgtgt
      301 tgctctgtgg gtgaagacac ttgatgcagc tctccctatc ccagagctgg accaggtctc
      361 tgccccgatg tgcctgcctc tttaacatgc agcagcgttg tgaaatgtaa gccctggaaa
      421 gcatttgcct gcattggggt gattattgtg ttgcaatgcc agtggtgtga cagtgggaat
      481 gatggggaga tgtgctcaca tttggaatcc taattgggct gctcacttgg ttatttctcc
      541 cctttcctag atggcaactc cattattgca tgtctttgct gtgttt
//
LOCUS       KCLA01001106             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17941upu ultra-conserved element locus uce-76,
            sequence.
ACCESSION   KCLA01001106
VERSION     KCLA01001106.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-76"
BASE COUNT          123 a           96 c           94 g          155 t
ORIGIN      
        1 catgttttcc ttttccttta tttgtgtgtg tatgtgtctc tttgcctctg ctctcccttc
       61 tctactcatc ctttatctct ttcccactct tcctcttttt tccaattcca ttagtgaaag
      121 tagataataa cttgtgaatt caagtggaac ttcatttctg aaaccgtaca ctcgtgctgg
      181 aacccattaa gctcgatagc gagaaatgag agaaatcata attatcaggc cagtaaaata
      241 catgaaacat aaaatttgtc agggaaagta attgaaatta ttggagcagt tgggtcctgg
      301 tgctgtgcag accctcagtg ataatggaaa ggttacgggc aatgtttagc aatgctgatg
      361 aggcccaagg tgactcaacg ccatcacagt cagcaacttt atgctctgct tacattaatt
      421 tgctaatcca tctttggaaa tggtcaggct gagtagtgca ttggggtt
//
LOCUS       KCLA01001107             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17956upu ultra-conserved element locus uce-6206,
            sequence.
ACCESSION   KCLA01001107
VERSION     KCLA01001107.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-6206"
BASE COUNT          115 a          254 c          213 g          123 t
ORIGIN      
        1 ccaaaccgcc tccctctccc cgccgccgcc tgcgctcccc gtctcccccc ccaggctgcc
       61 tgcgtctccc ctctccctgc tctaaactaa ttgcggcgct ggccgtgcct ggcgcagagc
      121 cacggatcga tcgcccgctg ctgccccggt gatgctaatc gcatcagcgc tcggccggcg
      181 ctcgcagcgc gctggcagct ccaattaatc tcaggtaacg ccgcgcccga ccttcggctg
      241 ggagccgggg cggcagccaa gcgatgctga tgtaattaca gcgtgaagtg tgtaatcacc
      301 tgccctaatc cccgaggcct cacaattagc cggggcgggg ctgccaagtg ctttgccacc
      361 cggacggccc gcggatgaat agcgggcaat taaagccgcc cgacggggcg aggaggtgtc
      421 cgctcgatcg taattagccg taatcacggg gagccgggcc cggcggacgt gctggtcgct
      481 tcgtgagcag caatttagga aatcgagtcg cttttaaccc ttccgtgggc aggcgagcgg
      541 cggccacgct ggggcccccg ggccggctgc tccgacggct cccgaggacc aaccgctcct
      601 tggcttcagc caacgggaga cagtctgtgc ccgggaagca ccccaccgga tggggtccaa
      661 gagcttctcc cttggctaac tcgatcccta aggcactctc ctctg
//
LOCUS       KCLA01001108             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17972upu ultra-conserved element locus uce-3472,
            sequence.
ACCESSION   KCLA01001108
VERSION     KCLA01001108.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17972upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-3472"
BASE COUNT          193 a           99 c           96 g          225 t
ORIGIN      
        1 ctttgggcct gctcccatgg tcaacaagaa ttttacacga cgaagtgtca aactagaagg
       61 ttgggttttg tacaatctta gtgtgtttaa acaatacagc aaattaagta ttacttagta
      121 agtgatgttg ttcacatcat aatttaaact ttatttaaat gctttttttt gtatttaaca
      181 ttattacaca aagtgcttag ttaagccagg cagcgttgat tatcattaaa gtattattta
      241 tttctatttt attaagaccc tttttacatt catgttacag gttaatttat acttttattt
      301 catgcactac ttggctttac tgattaatat gccccatggc attcaataaa gccaggcagt
      361 ggaggaaata agagtggtat taatttctaa cattgctata aatttgcctt aataaaatga
      421 gctcaataac actgcagtag taatacaatg gatgcttcca aattgttagc aaagacacaa
      481 ctgaaagagc acttccttcc tcagaatcta agcatgctgt gctgtcttta ctagtgttca
      541 aatttgacta cctgttttaa cactgagtgc tcttacattg ttttttaaaa agcagtttgt
      601 attttcaaaa aat
//
LOCUS       KCLA01001109             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 17988upu ultra-conserved element locus uce-5898,
            sequence.
ACCESSION   KCLA01001109
VERSION     KCLA01001109.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="17988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-5898"
BASE COUNT          200 a          145 c          144 g          184 t
ORIGIN      
        1 tacaagatga tcaagtccaa gggccctgga aggaaatcac gtggtggcta ggagcctgat
       61 ggtgatacct agtattacca cacagaagct gctgcttcct tctcccagct ctgggcagag
      121 gatgtgtcca tggctgggcc ccaggactcc tcacgcctgg caggctgcag cgatgctccc
      181 tgcagcactg ggagccagga gtcaatgctg tttgcacagt tgcactccga ttagctctgc
      241 gacggccgta accttagagc agtaaaccag tggcatatat atagttgaac aattatatgt
      301 attgtgccta aatttccccc tgaagatctc attcacgacg ttagagtgaa aggatcataa
      361 aatgaattaa tagctgattc actgtataat ttcctagttc aatatacttt agtgtagcgg
      421 ctaaatgagc catacacagc attcagctcg gccagttaac agctttatca ttgagatctc
      481 aggcttagaa ataaaagcaa ttcttctgaa gtaattgcgt ctaattaaaa gaaacattta
      541 aaaagtgtaa ccaaaaggaa ttcatttcaa atggaaaatt aatgctgaaa aatagccctg
      601 agctctcttg tctttgctaa tagctaagca ttctcagaat aattaaactg ttttgagatg
      661 ttggtacctt ccc
//
LOCUS       KCLA01001110             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18004upu ultra-conserved element locus uce-837,
            sequence.
ACCESSION   KCLA01001110
VERSION     KCLA01001110.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18004upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-837"
BASE COUNT          242 a          162 c          171 g          271 t
ORIGIN      
        1 gaggaggttt catcattgtg gaggatttcc atgcttgtct gtgtgtggta cagtcacaac
       61 tttaaatgtt ttttaaatgt agttactgtc tttgatatca agggactatg tgttcagata
      121 tacgctcaca tgtccaacta actgaaagcc tcaatttgta agaagaagaa aagcgaggct
      181 ggggacactg tacaaacggt gtttacacca ctgaagtgct tttgaaatgg aaagactctg
      241 catgaggagg cttgcagcta tgccacagcc ttgccgatac cagtgaggag ctcatcttca
      301 atgtagtgtt gaacgtaggt ggcaaaactg taatttctct cttttttaaa aactattttt
      361 tcttctttta tttttgaaat tttcatctaa gcggcagttt cttgtactat agtgactcct
      421 gctgggagag ttaagttgaa gtagctgaag gtctcttaca gatatatcaa ctcccggcca
      481 gtaaaaagat gtcctaaacg caggagatgg agttaaactg ttcccctacc ttggacgcaa
      541 tggcttcttt catcactaag aacaaacccc taggttttac aattgagact gagaaactag
      601 tacagtactt gtacaatttt tgatctacag catcacgacg tgaagctgca acaattagat
      661 gtaaagggtc cattcatgag gaataacatc actttgaccc tttgtgttag ctcctactgc
      721 taatctttcc atacgcgtga acttactttc aatttgaaga agatgaaaaa gtcttttgca
      781 aaaccccaat actgttttct gatctatgta cctgaatgta gaaacgtagt cttacctcgt
      841 tttttt
//
LOCUS       KCLA01001111            1185 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18020upu ultra-conserved element locus uce-5383,
            sequence.
ACCESSION   KCLA01001111
VERSION     KCLA01001111.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1185)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1185)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1185
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18020upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1185
                     /note="ultra-conserved element locus uce-5383"
BASE COUNT          323 a          249 c          277 g          336 t
ORIGIN      
        1 aggtgtttag aggagaaaaa aatcctgccg tggtgtaggc aatgacaaga gtaaacgtgg
       61 aaattaactc ctggcacatc ttttgttctg ggctgttatg ctcctgttaa gatcccccct
      121 ttctaatggc tttcgaaaga atttcttgca taatggcatt ttagtcatca tgttaatgtc
      181 aacaaacaag gcagattaat gcttctaatc ctgagctatc tcacactctg cttattaaaa
      241 ctgtaggcag atcttcatta ggatgaatga catctgaatc cgcgagctcg tcacaacaga
      301 ggcaccttct tgctgcggtg tcaccccgta gatgacaacg tcggccatta tgaatgacac
      361 tccacaattc gttatttcct acctcaaatt gcggttaatc tttcatccaa actgtacaca
      421 tgtgcggctt taagtgggcc atcacagcaa gtacccagta atgctgcaag cacatggaga
      481 atgacagaag gtaaattgct tgtcaggagg tctgtatttc aattcacagc atattccaaa
      541 cacgtcgtgg tgaaagctct ccacaacagc tgctttcatt gctaactatt tttgatgtaa
      601 atgtcaataa agctccaggc cttttcatat ttttggccaa gactgtccat ctttccctat
      661 gcaggctggc aggttgagct ccatttatct actcttagga acatgtccta taataatgat
      721 tgtctctgga gaccgtttag agtgattgaa agcagtgatt gggacaatgg gctgctggat
      781 ttcattgcta gattgggttg acaggtgact gcttttatac tctctaatcg ggaagaggtg
      841 gaagtaaaac caactgatat atcaacagag aggcttccac cgacggcaaa cctgcaccta
      901 gagttaaacg tcctctttgg aacaatttag tcacagggta ttagtgtttc tccaggggcc
      961 agaggctttt cggaagaagg gagggtggag cgggtgtgtg ttacctttaa gcagggaaag
     1021 aaaagatcac aggctgtaga gccctaccca tagaaacacc agctgctgct tttggtagct
     1081 gcagttaaga cctgcttgat ggaagtccct gggcagtaga gagggaaggg gatccacttt
     1141 gaatcagagg ccgtggatgt tttatgtctc ccatgaattt tacga
//
LOCUS       KCLA01001112             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18036upu ultra-conserved element locus uce-7427,
            sequence.
ACCESSION   KCLA01001112
VERSION     KCLA01001112.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18036upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-7427"
BASE COUNT          178 a           90 c          112 g          196 t
ORIGIN      
        1 tgtataatct gtacttgtgg aatgggaagg ttcaagcttc caccgttgct gatgcgtcat
       61 gtaatccacc tgtttaattt ttcttgtttg gtttacagtt ttttttcagt tttatagaaa
      121 aaaaaacaac cggggaagtt caggactttt tctacaagat ataaaactcc aatgatttag
      181 tggtgactag agagctgtgg aaaatatcac attaggagat gatgggctaa acatagatcc
      241 atttcattta gacaagtagg ataaccttta agacacatgg aacgatagag aaaactaaag
      301 ctagcaattg tttccaagaa attctgtaag aaatatctat ggcagtgatt gagcataatg
      361 tacaaattaa tgtgtttgaa acttccattt ccttaacctc ttcagtgaac ggtacacttg
      421 tgttcagttt tatgataaaa acaaagacca aagaaggcca acctcatttg attgtgtata
      481 ttctgcctgt cttaattatc aatagctgta aggatacagt gcaagtgatc tggtaaccag
      541 tggttcgcat ccttttcttt tttttttttt ttgggg
//
LOCUS       KCLA01001113             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18052upu ultra-conserved element locus uce-2861,
            sequence.
ACCESSION   KCLA01001113
VERSION     KCLA01001113.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18052upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-2861"
BASE COUNT          182 a          144 c          100 g          174 t
ORIGIN      
        1 cagaagaaca ttatttccct gtgcaactct ttcacctttc actgtaacca tttcctacac
       61 agacacagaa tttatataaa aggctttcct cagctttcat caaatctagg ttgcaggcct
      121 atttcgtacc attaattctc tccctcacca accgccacat caattcgata ctttataaac
      181 tatttcaggg atccgattta tcaggcctga cagagcttca cactgaaata aacagcactg
      241 cctctgccga gctcgctcag tggctcctat ttatcattat ttaattcaag ggcctaaaat
      301 tctctgacat tattaatagt aagatgaatc actagaaaac tacagaatct gtgaccaacg
      361 aggctgaaat aatccatttt ggtgaaaatg tctacgtgga attgcattct ctgatgggta
      421 gctgctctgt cattagtgac tccatatgca tgggtggtaa ggaactgaag catgaagtcc
      481 ccaaagagtg ggctacttca actgccactc tcttcccaac acttaacacc aaagcagaaa
      541 ataagggagt acagcacagc tctaatgcct ctgtcagttg aatttcaatg tactaattta
//
LOCUS       KCLA01001114             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18066upu ultra-conserved element locus uce-6291,
            sequence.
ACCESSION   KCLA01001114
VERSION     KCLA01001114.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18066upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6291"
BASE COUNT          214 a          153 c          142 g          154 t
ORIGIN      
        1 gaggagtcag ctaaccgagc ataaacggct cgcacagatt aggatccaaa catgtaatta
       61 agacagtcag aaaggtaacc tggctttagc cagtaattag ggctgctaga aattggacac
      121 cgcctcatcg aagtgttctg aatccaccac actactaaat aacccgcact gctggggaag
      181 tctacttgct atcaagggca aagctgctat acactgaggt aacagtaaat gacagactgt
      241 tgttcaagtc cattagctgc tatgtgatag gagcacattc actagcacac gacctgtgaa
      301 aaatcttaga tctctttaaa tctttgaatt ggattgctgc attaattctt aagaactgca
      361 atccttcaac caagtcaaat taccctcatt aacaggggaa aaactgcctc tgcaataagt
      421 taaaaaaaag aagatattta ttacctataa tcactttcac gtacttcacc tgcaagtgtg
      481 acaaaatggg gcaacaactc ccgaggccgg caccagttca actggtggtg gggacgggat
      541 ggagccgcct gtgagtgcgc acacccctgc gccgtcctct tctcggggga aaaaaacctc
      601 aatgaacgtt ctaagaaaag aaaaaatccc taagaataag cgaggcactc aagcgatctg
      661 tgt
//
LOCUS       KCLA01001115             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18080upu ultra-conserved element locus uce-1634,
            sequence.
ACCESSION   KCLA01001115
VERSION     KCLA01001115.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18080upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-1634"
BASE COUNT          201 a           96 c          106 g          195 t
ORIGIN      
        1 atttcataag atgtgcctgt cctcttctga atcagaactc ggggtttaaa taataaatta
       61 agcatagtct aaaatgcaaa tgaagtttct ctcaataaca cagcgagcta ttaagagaaa
      121 gtgtaaaggg ttatgataat tttaaagtat tatgaactac agaaaacaaa taaaaagcat
      181 tttcagtgaa tatgtccaat tcattgaact attctctcaa tccacttaac tacccacatg
      241 tgtacaataa tgatttatag acattatacc taattatgca tatttgggct gtgttagagt
      301 gcctaacaaa agctctagaa agcaacaatt acctctgttg cttagctaca tagtttaaaa
      361 tattcctatt aagtgcagat tattgtggag gggaaaaggg ggacaaaaat gcacatgtgc
      421 accacaatgc atttcacttt actgctgcca aactgttagc attttgggtc atttccagtt
      481 tacataattg tttggttcaa ctgtttgtta tatgttaaaa gaaaatattg attaattctt
      541 attcttcttt agaaaattgg actcatgcag ggagaggcgg ccttgtgcac tgtgtgca
//
LOCUS       KCLA01001116             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18095upu ultra-conserved element locus uce-25,
            sequence.
ACCESSION   KCLA01001116
VERSION     KCLA01001116.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-25"
BASE COUNT          189 a          103 c           90 g          148 t
ORIGIN      
        1 gggaaaagac ccctcagccc tatattgtaa atctattatg tctgtccaca tagagtaatt
       61 tgcaaagaga taaacacaag gcaggtacgg tgaaaatacg ttagtaaata aagacaaaaa
      121 taacatatgc atatatttta aattttagga atattcgact attaatggat atcaaaggaa
      181 agggaatttt aatcatctct ccattcagtc tcagttgggt aaatcatatc taagagattt
      241 gcataaatat aaaccatcaa agacttttca tcttcaaagg gggtttcaag accctataag
      301 ctttgtactg taatcatcgc aggtcacaac cctgcaggaa taaggctgct atggcaacat
      361 aaaaaactaa tgcttaaggc ttagcataat attctgacta atagaaagga aactcatttt
      421 aaaagctggc agcctattta ccagaagctg gattagaggt gttatttccc cttttagctt
      481 ccccccactg cccctcccca aaaggaggaa aatctaatca cccagatctt
//
LOCUS       KCLA01001117             632 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18111upu ultra-conserved element locus uce-4681,
            sequence.
ACCESSION   KCLA01001117
VERSION     KCLA01001117.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 632)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..632
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>632
                     /note="ultra-conserved element locus uce-4681"
BASE COUNT          192 a          128 c          146 g          166 t
ORIGIN      
        1 gataacactg tagggaccca gggtggcaca gggccctgct ttgttggcca gcccctatgg
       61 ccatccctgc atatccagtg gccttctcag gcattcctgg gctaacaaag cgagtgtggc
      121 cattgcccca ctgccggctg aggccgctcc ggggccagga ggaaaggggg tgcacagcaa
      181 tagagagaaa aaagccaatt tcatctttat tagaaggaga tttctctttt agtaataagc
      241 acgcttcaaa taattagcgt gttttacgta ataatgaaat tatggaaatg cagggcactt
      301 attcaaacaa gtcaccatta ccatattttt aaatattaga cttaattaga gtttatcact
      361 tcagagaagt acgaggagtg gggatttttt ttaaatcctc ataaagtgtt tattaagagc
      421 gggtaagaag gggataatga tctgtttgga aattaaggca atcaaacatt taatgctctg
      481 cactcctgta ggcaaaagca ttcaaatgag tcaattatac atccattatc caggcacgat
      541 taaacaaggc aggacgggga atttgtcctc cgcatcatgc aattgtcgcg aggacttatg
      601 tccacttaga ggcagctaat aaaacactga ac
//
LOCUS       KCLA01001118             939 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18125upu ultra-conserved element locus uce-1802,
            sequence.
ACCESSION   KCLA01001118
VERSION     KCLA01001118.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18125upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>939
                     /note="ultra-conserved element locus uce-1802"
BASE COUNT          265 a          173 c          210 g          291 t
ORIGIN      
        1 gtggctgcat cgctcctttg cacttctgag ggaaaagagg aattgtgctt acaaatccca
       61 ctcaatttat ttgtaggacc atcccttcct tgtttgaggt aagtgtaatt cccagaattc
      121 atgggccaaa ttctgttcta ggaacatcca agaggctgga ggggttacat gcagatggta
      181 ttggagcatg ctgccttgtc tccatagttg ttaaccatta actaaaggat tcacattggg
      241 taataaagct gatgcactgc ctgataccgt ttggagtttg gttaggatgc tccagttgcc
      301 atctctgtgc tgagcattaa aagggttaaa ggcgatgatg gtgccattaa aaacccagct
      361 tgccaagaag ctattttgtg tgaatggtat aaatataaga tacacttgtc tggctcattt
      421 gctttttgac ttctttcaca caactggtgt ttttgtgttt aatttaacaa gaaatgagta
      481 gtaaatgaaa gctgctgcct gaaatcccac tgtgagcatg ttttgcactt ggctccccag
      541 tgaaaaggca atttgtgaaa ttatgtgata gagtaattag atgaagccag ggcttctgat
      601 tgctgccatg cttatgtggt aaaggtttgc tgggggaaaa aaacccaacc atggattatt
      661 accctggcaa gttggctcaa agcttcttca tttatttgta aacagaatat ttagtgaccg
      721 cataggaagt agctgtaatc actagctcgt aaagaaacca cagcagagct tttggatttt
      781 tacagagtgc tcatgtaaaa tttaagctgg gaggcagaat ccctgttaat gtaattagga
      841 tctaatttac caccctttgc acacagatgt aataaagctg agatatttat tctgtcttta
      901 agcacattgc atctaccttg gtgcagcagt taccgaaca
//
LOCUS       KCLA01001119             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18139upu ultra-conserved element locus uce-3632,
            sequence.
ACCESSION   KCLA01001119
VERSION     KCLA01001119.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18139upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-3632"
BASE COUNT          244 a          198 c          147 g          339 t
ORIGIN      
        1 ggtctttgta agttcatttg tagagagatt ttgcttcttc agtagaagaa ttgccaaagg
       61 aacacaaaac atcaacctga aaaggtccca gcagagcttg atgaacagat agcaaaaaat
      121 accagttcaa aatgcaggca ttccaatgct tcggaaatcc catttagaga tatatttgtt
      181 tcccttcttc ccccactttt ttctacctga tcaagcaagc aagaaagtct aattaggatt
      241 cttccctctg acaccttgtg tttattcctc ttgttaaatt tcctctttgt ctatccatat
      301 atttgttctc attctctgca gaaaaacctt tgagccttga agacttgtaa ataaagggtt
      361 tttttgcttt tgctttggtg tcagttgttc tcttatcaaa gtgtttgatt tgcaattttt
      421 ttcttgtcgt ttgcagaagc cgaaagcggt atgccctctt cgttaccttt ccttccaacc
      481 tcaatcctac ctccactcct tctaacttca ggactaattc cttgccaaga acacaggaag
      541 ataacatctt tgtctatctt tctctgtgta tacacacaca tatatgcata catatatatt
      601 catctgtcta tgtgtgtgtg tatatatata tatatgtata tttatatctg ggcccccagt
      661 ctcaaagaga gagatagcat tttgtctttt cattggttct tgtgactcac gcactaactt
      721 ctttgcagga agtacaaata caaacatata agactttcag gctccttgtg aagtcattgg
      781 tgtatcagat tgttgcattt gaaaaccaga cattactgtt aacatctctc ctcttctttt
      841 ttcatttgta ctgtactgtg aggatgtata tttcgtcttt accagccctt gtgctgccat
      901 attgtgtcca tattcacacg ttcattaa
//
LOCUS       KCLA01001120            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18155upu ultra-conserved element locus uce-2849,
            sequence.
ACCESSION   KCLA01001120
VERSION     KCLA01001120.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-2849"
BASE COUNT          292 a          177 c          229 g          306 t
ORIGIN      
        1 attttgctaa ttttgcacat tctttcctaa aagtcattga aaccaatccc ataagttcct
       61 gtatcccagt aatatgagta gcagagatct tcacggtttg atttcaggta aaaggcaatg
      121 gaattaatat taccaaatca agagtctcaa aataaaatca gctgctttgt cggctagctg
      181 tttagaaatt aaattgagtt gatctattgt agcacgtagt cagggaagct ttctagttgc
      241 cttctcaggg cgtgctttgt cagaaaagtt ttggatagac tgttggtttg tgccttgttg
      301 gaagttaaag ggtgagagag caaacaaagc ccgcctgcag gcagaatcgt tttgccgggg
      361 aaggacatta ggagaaaagc aaatgaaggc aatctgatag ggagtgaggg ttctgtcatt
      421 cagaggcgag atacggtgct gtgtccatat gctctgttta ctgtagggtt ttatgagttg
      481 taacctgccc atgcaagctg ttaatgaggc taaatcttgc tgcttgagga ttgaattaca
      541 gcacacctct gggctaatgg ttctaaacac aaagtcccat tagggctggt ttcaaattca
      601 gacatttgca tttttcccat tgtgtcagag acaatgctga gtaaatagct acaaacaaac
      661 aatttgcatg gaaatgggga aaatgtacct aattagtatt ttgcgcttgt tttattaatg
      721 attgcttaaa ccaagtagca ctaagcagca gctctcagca gcatctgcag gtgtgggatg
      781 ctcagttggt gaaaaaaaaa ttaggcactt tatattccac ttagtgcagg tcagctgctg
      841 ctacctgggg tttatcccgt tcccgtgtca ataatgcgaa tttgtgctca gatttgtctg
      901 aaagccagac actgaatgag gattctggta gccttttcta atattggaag cgtggtcttc
      961 ataaaaaact tcgtaaaata aattatctta aataaagtca cctt
//
LOCUS       KCLA01001121             941 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18170upu ultra-conserved element locus uce-7692,
            sequence.
ACCESSION   KCLA01001121
VERSION     KCLA01001121.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>941
                     /note="ultra-conserved element locus uce-7692"
BASE COUNT          297 a          193 c          182 g          269 t
ORIGIN      
        1 aagaaaacaa aaaagggcga gagagaggga aacaatcttt tcctgtttct tccctgaggc
       61 tgaactgttt atcactccat ccttgttcaa tagaagtgaa ttttataata aaattttccc
      121 taatcgggct ctgtcagtga ggtgtcttat cgtggggagg aaaatgacac cgatcctatc
      181 gaaaaacaga gacgatgtca cagtgtcccc aatcacagct actcagcttc catatctacc
      241 ttctccacaa acaccaagca ctgctttttc ataagaacat caaaacctag cgaagtcatt
      301 aaaattgcac ccgcgtagag ttgcagggat cagccgcact agcgcaaaat gggatgtggg
      361 aaaacagact ctctaaatgt gctaattcca ttgtcacgtg tttacggctt aattttaatc
      421 agttaaaaaa gccacacatt gcaataaatt ggcattatct tctgtgacac cagaggacac
      481 agttggttca aggatttaga gggtcgctgg caacagtata tagtgttaca gacaaagtat
      541 ttttacgctt gaactacggt agctaaggtg caatccccag ttaagactgc aaacaaagac
      601 tataacccac acagtactaa gttcaacatg cagaccacct tcagcctgga gacagcgtag
      661 aatgctaaac tgaatattgc tgaagaacat tttctaattt aatggttaaa gttaatttgt
      721 tggccagtat aattgaggtt gcagttcagg agcgttctct tatgtgtcct gtaccataat
      781 gaagaaagat atttaggaaa aatccctttg ctctatttgt attcagtttc taaactggtg
      841 gtgcttgttt atatagtacc attaatttct tactcaaaac tgcattgcag tttctattcc
      901 tctactcaca gatatgtagg taaatcagcc aacacggact g
//
LOCUS       KCLA01001122             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18186upu ultra-conserved element locus uce-4939,
            sequence.
ACCESSION   KCLA01001122
VERSION     KCLA01001122.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18186upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-4939"
BASE COUNT          164 a           90 c          116 g          140 t
ORIGIN      
        1 ggggagggga gtgaatttgt gtgaagagtg acagaacgct ttgtccagca cagctttggc
       61 tggttgtaac aagcatcagg acattagacg caacaaaagc tggattggca gtatcatcaa
      121 tcacggggtt gacagtcgac ttcagtttgt ttgttccact ctgcataata agtgattgga
      181 tcaggtttaa ttagatattg ggtaatcaat cattgccaac aaggcaaccc agcttgggat
      241 ctagatgttg caaagcgggg aaaaaatgca agtctcatcc aggatgcaga aatactcaaa
      301 tgtataagca catagggcgc agcttcagaa gaaaggtata aagatgtctg caagatggca
      361 cataatagaa tcattcacat ctgtactact tgttaccaga catctgcagt ttgacatttt
      421 actttcgctt tataattact tttcaatata atatactgat ctgagggaga aagacaaagc
      481 aatgaaatta tgcataagat gcttttcccc
//
LOCUS       KCLA01001123            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18216upu ultra-conserved element locus uce-692,
            sequence.
ACCESSION   KCLA01001123
VERSION     KCLA01001123.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18216upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-692"
BASE COUNT          325 a          182 c          202 g          335 t
ORIGIN      
        1 ggaaaaggct ggagtagcaa caagctgagg catcacatct gaaacctgaa tgcttctaac
       61 ggatgcttag agaagataac gcctggattt aagaagctgc tcctagtcaa ataacataaa
      121 gcagttaata cctcagctgc aacttcggat gattatagtg cctgttgcaa gaactttctg
      181 gtaaggagat ttccgtggga aatgcttgac tgagtcaatc aaaaactgga gtaactatta
      241 cacgattcct aattttgcac atgacagcca ggatttcatt ccggtaggtc atttgattct
      301 ctgcaggtgt ctctgttggt ttctggaaca ctggcctgtg aattacatgt gataattctg
      361 aatagcgttg tgtttgaatc tataaacatc tctagaccta atgcaaagat tcctttgaat
      421 aatttatcca gctaagtgtc tgtggtccta aactcctaat ttaaaaatgt tgataaatga
      481 agtatctctt tagctaataa atgaagtatc tctttagtta tcctttgtca gcaacattca
      541 ttttaatgga aagtgagttt acagggttac atgattgaac tactgagcca agtcagtgtt
      601 ggcaaatgat gggctaaatt attgatgtta cacactaatg aattctgatg agaaataaaa
      661 tacagacatt acatttcaag tagttcataa ttatttttgt actttaaaag caattttatt
      721 cttttcctga atcatactgg ttctgtaaaa caaaaacata gttagtgatt ataactaaaa
      781 ttatcgagtt ggaggcacaa aggctcccgt aagttttcat acgcgagggt actgctattt
      841 gcactaggat cctgatttct tcctctacct cagagagagg gtaattcaat gaaacctcta
      901 aagtttgaaa ctgctgtctt taaataaaat catctacttc tcaaccatgt ttgagagttc
      961 actgggtgac tttctaatct gtgaggtagc gtgtttacca gagatgttct gaactccttc
     1021 cattaatcca ggtgacaaga agaa
//
LOCUS       KCLA01001124             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18230upu ultra-conserved element locus uce-7009,
            sequence.
ACCESSION   KCLA01001124
VERSION     KCLA01001124.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-7009"
BASE COUNT          277 a          190 c          147 g          278 t
ORIGIN      
        1 ttataatagg tagctacttg cacattagaa gcacactgaa attcatgttt tgcatgtcaa
       61 aatatattta gatggccaca caagagcaga gatagataca ctgaccttta tcaaagggga
      121 aagtcataaa gaaacatttg cttgcatttg tatacctgct tctcaaaaca ctaactgcta
      181 ccaacctaaa cacaggatgt cattgaacat gctttactcc agagtcacag atgtggagat
      241 gaagggaacc aagctcttcc atatgaactt agctaaaaaa ataagctgtg acacagcaaa
      301 agcactataa tgaaacattc tagtacttat gaccagcact taagaacata ttcagaatgg
      361 cagcttacca ggattatgat gagtcacaga ttctccattt tgaaatacat ctccagccac
      421 gttcattcta ccaggattga aaggtcctac accactcttg gtctgtgaag ttaaagatgg
      481 ggtgtatgtt tgcatgttaa caccaaaatt atttgagtgc agtccattag atacatctcc
      541 caagctggca ttctgcagtg atgttacatg tgtaatcatt aagttcatgt cacgcccttc
      601 agcattttct aaacgaccat cactcacaga gctcatagca cctctttcta atgtagtaac
      661 attagcaatc tgaatttcag agtctggttc tgtggttata ccactattac ctattcctga
      721 atttacctta cttctggaaa aactggaagc tgagaattcc atatcgttgg ttctattttt
      781 acactctgga agtcttcgtt cattaaaact ggaagcattc ttctcttgtc ctccatttgt
      841 ttcaaggtct tcttcatcat caataataat agtttcactt atactccctt tc
//
LOCUS       KCLA01001125             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18246upu ultra-conserved element locus uce-2247,
            sequence.
ACCESSION   KCLA01001125
VERSION     KCLA01001125.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18246upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-2247"
BASE COUNT          211 a          167 c          200 g          211 t
ORIGIN      
        1 gatccgtgtg aggcaacaat tgctcttgtt attgcactcc tgagggaagg ttcatctcaa
       61 cgcggagcct tcgctctggc ttcgctaagt tcttttatta aaaatcctcc ttaaaacgaa
      121 tttaacaata atcctccagc cccacaccgg agcgggacat ccacgccctt tgagcccttt
      181 ttgggtggaa atgggaggaa gaaaaaagaa agaaaagcca aattgcagga gggagattta
      241 tttttcctgg ttttgcgaat aaagagggat gcgggttatt tatgttgctg caaagtcctt
      301 atctccgtgt ggcactaaac aaggatttgt tgtgggattt gagagggctg tgtagtgctt
      361 cagtgttaag cacccaaaac tctgggggac tggcactaat ttcctctctc tcgtaaaaca
      421 acatagtatt cataacaact cgagaggctt gacataagta atgatggcat atgcaggcga
      481 agattaccac cccaacagtg taatcaaggt gctaggtact aatgcaagtt aaattgagac
      541 aataatgctg aaacttgcat tgtgggatta ggagagtact tgaaacgctg acatcggcat
      601 ctccgggaag agcgcccgtc ttcctttcaa ttcctctccc tacttaatga cctcaaaatt
      661 tgtatgtcgt taacaccgtg tactgaagtg ggagacaaca aggggtggga gggagagcgt
      721 tcccagcctt cgttgacttt ttggctcttg tggtaattgg cggcgggacc ccgaggtggc
      781 ggcgctcaa
//
LOCUS       KCLA01001126             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18276upu ultra-conserved element locus uce-3227,
            sequence.
ACCESSION   KCLA01001126
VERSION     KCLA01001126.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-3227"
BASE COUNT          126 a           56 c           74 g          103 t
ORIGIN      
        1 gtaaaattat ccagaatgta ataataccat gttattgact taagcacagt tccccgtgac
       61 atgctgcagc tgacctgtaa tttttatcct acatgttgcc agcactatta aaatgacact
      121 tgtgaatgta aattaagctc acaaagggga cagattgtat gattctggtt tctctcagat
      181 gcctgtaggc tatcacaggt tccatatgtg aagtaattat gttcactgaa ggaaagaata
      241 aatgctgtca aattgtgtac tgagagagaa agcagctatt atattgcagt agtcactgga
      301 gcattgcctc agaaagtgga aagatgtgta agaaaataat aataaaaaag aaaaactgg
//
LOCUS       KCLA01001127             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18291upu ultra-conserved element locus uce-2048,
            sequence.
ACCESSION   KCLA01001127
VERSION     KCLA01001127.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-2048"
BASE COUNT          181 a          135 c          148 g          183 t
ORIGIN      
        1 atgtacctgc agccctgtcc ggtgaatctc gaggagctcc aggaacctta agaagtcagt
       61 taatgaaatg ttaaaggcac attctgaagt acctcccata tatattgctc ctaatgacat
      121 tcacgtgagc ttacaaggaa ggtcacaggg gagatcttta gatcccccag gctcccccaa
      181 gatgcctttc cataaccaaa tgctttcata tgagtaatca aaagaagcct ttagtcagcc
      241 actggggagt ctttacagcc tggcttcgat tggagcctga gtgcaggcct gcgagtggga
      301 ggtgtttgta agcatttcta atggcgtttt gatgtacatg tacaaaattg atgtcggaag
      361 gatcattgca aagtcccaaa cagtggaata ttgaggacat tttcaggtgg cagtcagatt
      421 ctgactgggt gagcccagta tattttctca tgtcacagtt gattaggttc acggggaagt
      481 ggaaagagta aaaaattctc ttattactgc agcaatgcca tatcagcctc ttttcccttt
      541 gaatgcaaca ttagtttttg tccagaactc taactgcttt ctacagtttg gggaattgta
      601 aagcagaaac aattttccca gctaggctga ccttcacagt aatgaga
//
LOCUS       KCLA01001128             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18306upu ultra-conserved element locus uce-6165,
            sequence.
ACCESSION   KCLA01001128
VERSION     KCLA01001128.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18306upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-6165"
BASE COUNT          212 a          147 c          147 g          220 t
ORIGIN      
        1 aatgtctgtt ttattgctgg aatagatgga gcaggtctga agcactgtcc ttgtccagcc
       61 aaagccacgc tgtgctccta acaggtaatg aacttggcag ctcagcaaac cttcagccag
      121 tgctgaaagc aaaggcaagt tccatcagtc tcctggagac gcagagtgtg ggggcaaggg
      181 agggagaggt tttgctcagc agggagggaa gaaagggacg caggagtaca tgcacccaca
      241 tgtgaatgtc tgacacactg ccatgtgatt tatcatcata ctcccacttg taactccaac
      301 ctaacagtgt gtcatcttta cttttcatgt tatttattta caagtgcatt ttcagtacca
      361 accctttcat tcattaatcc taatgtggcc tttttcagtg cctacttacc attttaaata
      421 cttactataa tttacagggc tttcttgaac acatccaagg tatattatat ggggctagct
      481 taatggaaag tcttgtacac caaagcagga aaaaagcaca tataatttat ggtggctttg
      541 aattttgctc ataatttact tctggagaac tagtcatata aagctatacc aatgagaatt
      601 ttcggaggca acgtaggagg aaaaccccaa taaatgctga tcttattatt catttttatt
      661 ctgaaagctt tcccatgctg cattctggga ttatgtaaac tacttataac ttagcaatgc
      721 aatttt
//
LOCUS       KCLA01001129             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18322upu ultra-conserved element locus uce-3614,
            sequence.
ACCESSION   KCLA01001129
VERSION     KCLA01001129.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18322upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-3614"
BASE COUNT          116 a          109 c          203 g          161 t
ORIGIN      
        1 aatttgccaa gccatagagg gttatcaact tgctgttgaa tgtcgcccaa agcagaacta
       61 ccctgtgtgc ctgtgtcagt actcaccttg caatttccgg cgatggaagc gaggagaccc
      121 caggaaacta ttcttgattg aattgagacg tgtcctccat ggcattcctc caatgctggg
      181 gctggatggt ggtgttgggt tgggtgtgcc tgctgggctc tcctttggcg tatgaacagg
      241 tgtcccctta ggggtaggga ggggacttcc ccttggagag gggtgagggg tgacctgtat
      301 gatggggata gatttggtgc ttgggtcagt actagaaggg agcaatctaa taggagacat
      361 agggttggtc tgtactttag gaacagccag ctgtgggtta aagccggcag caggcgagcg
      421 gccctgagca ttctgtacag ggctgttctg ggaagagggg gcgctggcat tgctggtagg
      481 gagtggattt gatttagtag actggagtgg tttttcggcc aatttgctct tggatggcaa
      541 agtctgcgtc tttgggttgg gctgaagtgt tggctttggt tggagtaca
//
LOCUS       KCLA01001130             814 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18338upu ultra-conserved element locus uce-2841,
            sequence.
ACCESSION   KCLA01001130
VERSION     KCLA01001130.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 814)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 814)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..814
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18338upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>814
                     /note="ultra-conserved element locus uce-2841"
BASE COUNT          241 a          169 c          176 g          228 t
ORIGIN      
        1 tgctgctcca gtccttgctc tggcaaatgt aagctgacag gtagaaacca gttagaattt
       61 gtgactcagc caaggatggc gattggctaa atgtcacatg gatagggtgc aagtgggcaa
      121 aagtgggttt atcctgcctt tttcaggttg cagtgttgaa agaaggcaag cttccaaggt
      181 tatctttgga atagcttcac tggtgtctag atggcttcac gatttggtat aattctgtat
      241 aattaagagt cttttttctt attttatgca gaatcagatt cagtacctca agcaagtcca
      301 gcagcctagt gttgcccaac tgcgatcaac aatggtggac cctgccatca acttgttttt
      361 ccttaaaatg aaaggtgaac tggaacagac taaagacaaa ctggaacaag cccaaaatga
      421 actgagtgcc tggaaattta cgcctgatag gtaaacaaaa caaatactcc ccagtcaaga
      481 cttccctgac agtcccacta cgagaatgct atggtgggac agccaagtac tcgtttccac
      541 accaagactc agacgttttg aggcaaaagc cacattctta tactgtccag cttgtaatgc
      601 ttaatgtaaa acttaccaga tgaaccttgt gtttcagctt ttttctcccc ctttgcttca
      661 gaggcctgat ggcgtcggac tattctgaag aaatggccat cttcgaaaaa aaatcttttc
      721 tagaacatgt agacgtttgc aaaattgttc tatttgaaga aaatagaggg agaaacagaa
      781 gtcttaagtc tgtggcacac tgtgtctaca gaca
//
LOCUS       KCLA01001131             463 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18354upu ultra-conserved element locus uce-2569,
            sequence.
ACCESSION   KCLA01001131
VERSION     KCLA01001131.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 463)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..463
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18354upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>463
                     /note="ultra-conserved element locus uce-2569"
BASE COUNT          104 a          131 c          160 g           68 t
ORIGIN      
        1 cgggacaagt cgaacctgta cccgagcggc acccaggcgg ggacgggagg tgccgcgctt
       61 cgccctaacg ggcagaccaa gtcactggtg ccgcagcggc tggcgttgga gtacatcgtg
      121 ccctgcatga acaagcatgg catctgtgta gtggacgact tcctgggcaa ggagttgggc
      181 gggttggtgg cccaggaggt acgggccctc catcacaccg ggcggttcac cgacgggcag
      241 ctcgtcagcc agaagagcga ctcgtccaag gacattcgcg gcgacaagat cacctgggtg
      301 gaaggcaagg agccgggctg ccagaccatc cggctgctca tgaactgtat ggacgatctc
      361 atccgacact gcaacggcaa actgggaaac tacaaaatca acggcaggac gaaagtgagt
      421 gcggggatcc gcggggacaa cccactgcac acggtgtgtg ggg
//
LOCUS       KCLA01001132             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18369upu ultra-conserved element locus uce-3007,
            sequence.
ACCESSION   KCLA01001132
VERSION     KCLA01001132.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-3007"
BASE COUNT          249 a          225 c          210 g          308 t
ORIGIN      
        1 atgcaccgct cgactcgagc gtccccacag ttccgggctg tttgcaattt aagccgaggt
       61 cagggtgcac gttttgcaaa taagccttta aagcagttta aacctcagtc tcatgggctg
      121 ttcgggatcc acccctaact gtcctgtggc tttcttaaat acgccaagag ctatcgctgt
      181 gtatgagggg cagggaagtc cagtgtgaac ggctcatctt cagcccaagt caggcagccg
      241 tgcagtccct ggcaggggtc tgctgtcaga gccttgtggc aattacagag taattgcaaa
      301 aataatatta aaaaaaacta aagtgcctct acttcagaga aatctgggct caaggtttgg
      361 gctggagcat catctcttcc tttaaaagct ccgaccaaat tattgagctg ataagcgatt
      421 ccccttggtt ttacatttgc tggcgtgaat tatccttgag tgctgcatat tagggttgtt
      481 ttgtactaaa aggtgttaaa cacttgtaat aaatattttt ccttatttcc cctaggacac
      541 agttccatct ctggttggtg aagcataaaa aagagctgtc atgcccagtt ttaataggca
      601 ataggatttc aagcccccag agttgtttca cagtctggca gtggccataa tgaaactggc
      661 cactgttgcc acaagacttt ttcctctcat gcgttctccc ctgttacctc ccacagctgc
      721 ttgactggca ggtctctcac aaactacaaa catatttaca ttggagccgg tagaatttcc
      781 cttgctctct gtgccatttt tcctcttttg ctcttttttc ctttgcctag ctggaggctc
      841 aaccttaagt ctaattttaa agtataaaat taaactgtgc atgcaattag ctgcctttga
      901 gcatgaacag cagtttgctt tcatgcgttt tgttgtgaag aaaatagctt gtttatttgt
      961 ttgttactga ttcccaaata aatgggaaaa ca
//
LOCUS       KCLA01001133             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18385upu ultra-conserved element locus uce-7871,
            sequence.
ACCESSION   KCLA01001133
VERSION     KCLA01001133.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18385upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-7871"
BASE COUNT          234 a          146 c          161 g          278 t
ORIGIN      
        1 caaccacaga tgcctgattc tgctgttatt tatgttgatg tgaattaaga ataactctac
       61 tgctatcaat aaagcatcat ccaagagtgt gagaaagaga actgggtgcc tgaggtgtgt
      121 aatggctgaa tttagagcct ttactctctt ttcctccttt caaaaatgaa gcctttggaa
      181 ggaaatgtat ttaacctgga gagtgaattc aatgtaggtg gtacagcggg gtgcagttta
      241 atgtgagatg ttgatgttga cagaaataga attgttaaaa aataaaatta aaaaaaaacc
      301 ccctcacaac ctctagaaag gagaaagtga actaaactaa tcctattaaa cgtggtagca
      361 tgtttctgtg cagctccctg agagattaag cacaggaaaa gggataagtg ctgcttcagt
      421 ttcactaaac taatgtgaca acttgtcatt ggaaatcttt acagcttgtt agcagatgac
      481 tagctgattc agatatgttt tctaccattt cctttgtgtc tgggggtggt gttttttctt
      541 tcctgttcct ttcttatcca tactgcttta ttttgctttt taatccttca tgtctccttc
      601 aagtcaaaac atttaacttg ctttaatcaa tattttgttt tgaagatgtc ccttgacctt
      661 ttgtttgtgc aaattaacct tcaagggcac ctcattcatc cattaaccgc agtgggatgc
      721 cgtatccctt gtacatggca ttttaggatg cataaaacat ttatgtatgt ttagacatat
      781 tgcagtgaat gactgtgaca ctgttgcagt tactgctac
//
LOCUS       KCLA01001134             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18401upu ultra-conserved element locus uce-7592,
            sequence.
ACCESSION   KCLA01001134
VERSION     KCLA01001134.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18401upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-7592"
BASE COUNT          240 a          143 c          196 g          129 t
ORIGIN      
        1 gacgactctg aggaggaaga agaggaggaa gatgaagtga cttacaaaag ggagcagatt
       61 atagtagagg taaaccttaa caaccaaaca ttaaatgtat caaaagggga gaagggtgtc
      121 ccctcccagt ccaaagagac tgctgttctt aagaccagca gtgaggaaga ggaggagggt
      181 gacagtgagg ccactgaaga cagtaatgat tatcaggaaa ttcagaggca gaagaaaaaa
      241 gagaaaagtg tggaaaaagt tagtgttgca cagaggagaa caaggagagc tgcatctgct
      301 gcagcagcca caacttcccc atcacccaga actacaaggg gtcgtagaaa gagtgtggag
      361 ctccccaagc gtaagaagaa agctgcaaag gagcccaagg cacctgtgca gaaatcaaag
      421 tgtgaagaga aggagacttt aacctgtgag aagtgcccca gggtgtttaa cacacgctgg
      481 tacctggaga agcacatgaa cgtcactcac aggcgcatgc agatctgcga caaatgtggg
      541 aagaaatttg ttctagaaag tgagctgtcc cttcaccagc aaacagactg tgaaaaaaat
      601 atccaggtag gtctgctcac ctgcttgcca gatttccata ccttctgtcg tgccctggat
      661 acagctagcg gacacttcag agggggaaat cttttgcaca gaccaggt
//
LOCUS       KCLA01001135             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18417upu ultra-conserved element locus uce-3027,
            sequence.
ACCESSION   KCLA01001135
VERSION     KCLA01001135.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18417upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-3027"
BASE COUNT          225 a          140 c          140 g          208 t
ORIGIN      
        1 aaaaatggtt gcattgcagc caggaaacaa ttcatgcctg ggacaactgc attattcgtc
       61 acagcaccgt gacctctcac cccgtgtgat aaagtacaca ggtcagaatt gacaatacat
      121 actcatggct gatcatggct gccagttatt gatccgagga cgggggaaaa aaagaaaact
      181 ttgcaggaaa aacattgctc tgaattacaa acacgcattc tcctgagact cagcaactct
      241 ctgggtttct cccactggag ctggaaagca agaagtgagt tcagccagta tttaatatca
      301 agtgaatgtg gtgtttaatc aatactattc tgcttttgtt ccacgatgtg gaaagcagtg
      361 tctattcatt cagtaaaggt taatgccaag ggtcaagtga tttcacactc tctgtaggat
      421 ccacaacatt tcagtagttc agatgccttg gacaatgatg actcagttgg actgatttat
      481 tgccactcta aggccctgct taatactaaa gtgctatctt atgataatac ctcagaaaat
      541 agcactgata aaagaggagg caataattac ctacattttg aagtaatgtc ttcatttcta
      601 acatcctata aagatgtaag gtccatttaa aatgatctgc tccttgtatt agcaagtcag
      661 ttaaatcaga tattatcagt gttctctggt ttatgaaatg ctatctatga aaa
//
LOCUS       KCLA01001136             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18431upu ultra-conserved element locus uce-1841,
            sequence.
ACCESSION   KCLA01001136
VERSION     KCLA01001136.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18431upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-1841"
BASE COUNT          228 a          176 c          224 g          318 t
ORIGIN      
        1 aatgtaacct ttgctgtgaa aaatttggga acctttagga cacttctgca ccacagcttg
       61 tactgaatca tatctgggcc attttacctc ttcatactgt gcgactcctg catgtaaaca
      121 ctgtcctttg atttaggcac cagtaagcag gaggcaggtt aggtctatgg tgccttgttt
      181 ggagtagctg tcattagtcc taggttctga tgtcgttacg ctcttggatg atggcagcaa
      241 ctctattgaa aggaatgaaa atgtggagtg agtactgtgg aacggatggg actgagaaga
      301 ggatcaggtc ttcaggctgc agcttttcag acctgcagtg aacagaaagg aaacccttcg
      361 gaagcgtttg gcacttgggg ttgtttgtat attcttggtg tacacatcat gtgcatctgt
      421 gtgtgtctgt gtgtacgtat atatgatatg tgtaaaagta ctttttatat agtaactttc
      481 tgcatagggc aacccaaaca gctgttattc ctttttatag cttctttaat ctatgtgcca
      541 acaagtcagt ttacaaaatc tgttttgttg atgactgctg cgataataat tgtggtgttt
      601 tgtggcttgg caaaagcctg gggtctcctc cgaggactct tgccaaagcc tttgaagggg
      661 ttgaggtgga ttcactgcca aaatgagtca ccactctcta ttttatttag tgtccttctg
      721 ccaaggcctt agacactttc tgttttcatt cttttgtagg ctttccttcc cacattgtgg
      781 tttccttcac agccagagta atgtgtttgc cagcataggt gagagagtgt ggctgagtct
      841 ccaaatgcca ctgctagact gtgcttaagg gttagtggtt tagctattgt gctttctcaa
      901 aatgaatgtg caagatttaa ttatatgcct atgaattata aataat
//
LOCUS       KCLA01001137             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18447upu ultra-conserved element locus uce-3864,
            sequence.
ACCESSION   KCLA01001137
VERSION     KCLA01001137.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18447upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-3864"
BASE COUNT          190 a           84 c           81 g          207 t
ORIGIN      
        1 gttctgctat ctaaggaaaa attagtgaca gttattttta ggagaccagt gaatcatttt
       61 cctttcttat cagcatacat tttactcttt gttgtggctt aatttaaaag caactgcaaa
      121 gttaaaaata ctttttactg caggaaaagt aattaaatca gttttatatt tgtagagctg
      181 ctttaaagta ttaaagtaac atgatcccaa gtgaacttaa aattttaatt cattttacct
      241 tatgctggct gtggaagaag tcaaattttt aaatgcaata tgacatatgg ctgttcatta
      301 tttatacatt ctgtagcaga ctataaattt tactttggac atatatcgaa gcactgaaac
      361 catttcagtt gcaaacacat aaatcatagt tacagttatt agtctaaatg taatgccacc
      421 caggttctag atcaaaacct ttaaaatcca ttataattga cgtctgctgc ataacttatg
      481 tctgatttta ttaaaggaac tcattattat ttatatcttt gaaacgttat attcctagct
      541 gtgtaaccag ttaaatgtga aa
//
LOCUS       KCLA01001138             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18463upu ultra-conserved element locus uce-6231,
            sequence.
ACCESSION   KCLA01001138
VERSION     KCLA01001138.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-6231"
BASE COUNT          140 a          170 c          149 g          131 t
ORIGIN      
        1 ctgaatcctg cacacacccc gagcctagca cgggctgcag ggttcaggca ggtccttcaa
       61 ccagctgcct cctcctccct tacctgcaca tccacttcat cctgctggga acatccctgt
      121 gcacaactag acctggaacg agtgctgtgc agtgaagttt gggcaggtca aaccctgctg
      181 aggagcagtt taacccccag cccctccagg tcacccgagc tgcccagctc cccactctca
      241 ggtacctata gtcaccaccc cctaattccc agctcctgct cactggttgt gcgagctgtt
      301 tccccccaaa caccgaggcg ggtaggagct ctgcatccta ggagagggtt aacctcgggc
      361 gggatgcggg atgccctcat gggaatggaa tgtgtagtgt tggtaagtgg tggtgcccca
      421 gaagcctttg agaaccccct gactactgcc tgctaacgat tgggattatt aaagaacaat
      481 tgatggcctg taaccaaaca acagaaacta attactggaa aacttttatt gtcctttaat
      541 tactgggcct ctttgtcaat taacgggaga gagagagaga gagggagaga
//
LOCUS       KCLA01001139             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18493upu ultra-conserved element locus uce-2586,
            sequence.
ACCESSION   KCLA01001139
VERSION     KCLA01001139.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-2586"
BASE COUNT          179 a          103 c          135 g          243 t
ORIGIN      
        1 gcaagtatcc acgggtaagt tttttgaaaa ttgaatataa actcatggag aaatgcttta
       61 tttgattctc tgtttatggg aaattcattt tatttgactt ttttatttgt aatatcaact
      121 ctattgcaga gcagagtttc taggtgctcc cttatggtac cattcttcta aattattaat
      181 gccgtactgt tgatatattg tcagccttgt acatacattc tatgaaaatg agttttacag
      241 taggctggga tttataacaa agcttgacat atgcagctaa ttcacctaga cagtcttgtc
      301 agttttaggt tcataaataa ttgatacccg gggctcggag ttcagctact gttagtgctc
      361 cagctgttaa atttcagcag cataatggat gaatatttgt ttataatttc tgtacatgga
      421 cccgatgtca gatccccggt ctcatttaca taggtagatt gagatgttgg aagtgtaatg
      481 agcatatgaa gatgatgaat tgttttgctc agtgctggtg cgtttctgta aatgtttgat
      541 tagttttgaa tggattactg ttagattatc tggttcaggg gttaaagcga gcagctcttt
      601 gctcccaaag ctttcctgat cccttgctga cagattttaa aattcataca gtgatattag
//
LOCUS       KCLA01001140             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18509upu ultra-conserved element locus uce-5426,
            sequence.
ACCESSION   KCLA01001140
VERSION     KCLA01001140.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18509upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-5426"
BASE COUNT          153 a          109 c          143 g          198 t
ORIGIN      
        1 ttctactgct aattaactcg ggttgtgtta agtaaaagtt aaatcacact gcaagctgta
       61 ggaagacttg ttctagaaat acccagtgct agagacttga tgactgattt ggaattgttc
      121 ctgtttaacg atctgtagac ttgtggcctt tcttggcttt ggatttctct gctacactag
      181 tcggccatgt agcaactgca ctgtgcaata ttacaatatg aggactggga ggatttttta
      241 tggatgtaat gtctcttaca gtttgcgata gtatttcttt ctagttctca gtgatttcaa
      301 tgtgaccaag ccttctgtac tttgtcacaa aaagcgggtt ttccaggtga ctattttggt
      361 gagtgtcaaa ataagaattt atggtgtatt actgtcgaga ttcactttga attaaaatat
      421 atattgcagc agacggcttt cggtggcttt ccttatgcga tggggcgtgc cacggctgct
      481 ttaaggtaaa ggtgatggag attcacaggg atggctcttg gtttctgatg gcatcacaga
      541 atcacaggcg ttagggattg gaagggacct caaatgatca tctagtccac tacccccacc
      601 aga
//
LOCUS       KCLA01001141             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18524upu ultra-conserved element locus uce-7419,
            sequence.
ACCESSION   KCLA01001141
VERSION     KCLA01001141.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-7419"
BASE COUNT          175 a          145 c          131 g          163 t
ORIGIN      
        1 gctgtgtggt cactgttttc aatatccctc ccgctagcca ttacatcatc cagctactct
       61 ctaagaggat tttcagcagg cttggcttcg ttattaaaat agtaattaat tttttcctct
      121 tcacaaaacc cgaggacctt caaatggagg cctcgggagc gagggcagct tccttttcaa
      181 agtggccttt ctagaagcca taatcggctc tccaacttta cagtacacat gttccccagt
      241 aaatgtgatt aaagagccac acaaaaaccc ccttgcagaa aattaattca gtttccagaa
      301 taaaaagttt gataaagttg tgcaatgctc caatgacaac acataataga agtgcagagt
      361 tttatcctct tgaaggataa atgagcggcc agaaaggtct ggtagttccc agagtaaaaa
      421 catctgctac agctaattca ctttagcttt tgattgtaaa attcattagc catatcaggc
      481 agctgtagtt tcaaacatgt tgctaggaag tacagtttga caggctggga tgccgtttgt
      541 tctccccagc agcgccgagg tagcccgagc gcccggtgaa acgcagcctc ctgcaaccca
      601 ggcagagcgg gagg
//
LOCUS       KCLA01001142             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18555upu ultra-conserved element locus uce-2875,
            sequence.
ACCESSION   KCLA01001142
VERSION     KCLA01001142.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-2875"
BASE COUNT          240 a          131 c          128 g          217 t
ORIGIN      
        1 aatccctaac actttgattc tgtgattaat acatagactt tgaatgcttc ttggcaaaag
       61 aaccatgtca cactcaggag gttttccagc ctctggaata cagaactatt gaacttgaga
      121 ttcctatttt ctatcctttc caaagagatt aaaatttctt aatgaaagaa tttcccttat
      181 atgaagaaaa tattcgagga aaaaactgca agacgacaaa attaatctgc agtttggtaa
      241 agtttgagtc agtctctgag caccacgctt atctatccag taaagcttgt gttaatgcga
      301 tgtaagagtt tgggaaattc aagtctaatg gagcataaaa gtgcttttgc ttgaaagtga
      361 gatgattttt aaaaattcaa agcatgatca cttttcccct ttttttttgg caggaacaat
      421 ctgatacaag cagcaaagct taaataaact agaaacattt caaatgatcc agaaaggatt
      481 aataagcact gcaggaagtc ctataggctc agcgtataca ttttccatct tgttctcctg
      541 ccacaggcat gacatgaaat tctaaacaga actcaagttt caaagtcact gaatgtgaac
      601 gtctgcagct ttgatactgg ggtagagcgg ggtcaccatc ttggaatatt gaatttaaat
      661 atataaccaa acattggttt tattagcata ataaagcccc caaatgatgg cccttc
//
LOCUS       KCLA01001143             313 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18570upu ultra-conserved element locus uce-6920,
            sequence.
ACCESSION   KCLA01001143
VERSION     KCLA01001143.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18570upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>313
                     /note="ultra-conserved element locus uce-6920"
BASE COUNT          104 a           46 c           57 g          106 t
ORIGIN      
        1 aatagcatta tctgtaaatt actgacttgc agacttaaaa ctgctggata ctgcaacaaa
       61 atctgtgtgt gttggtttta ttattaactc tagctttgaa ttagaattcc ctatattaca
      121 gcttggagct aaactctgtt tacaaaacag tatttacact tgactaattt tgcagatcaa
      181 actaattaaa tcaattaaac tggtgattaa ccaaatgaag gctgattgca aaaattagtg
      241 ggtttatttt ggaggactgg aagtaagcta attactgcag tgattacttg aacctggagt
      301 actctaaatg tgg
//
LOCUS       KCLA01001144             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18585upu ultra-conserved element locus uce-3463,
            sequence.
ACCESSION   KCLA01001144
VERSION     KCLA01001144.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18585upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-3463"
BASE COUNT          122 a          115 c          137 g          161 t
ORIGIN      
        1 agcccggcgg ggtgtgagca cgttcagcgc cctcgaaacc catgcagatc gtgcgctctc
       61 ctggggaggt tgggtgccgg cttctgcggc agcgaggctc tggtgggatg agaaaccctc
      121 ctgctttcct ccttcctgct ggagtgagcc cttttcattc catgctgcca gttccctgtg
      181 attgaaattt gaaagcatgt agctgttaat ctgggagtga ttaaagagcc tcatttcttg
      241 gaagagtcag tactcatcat ctgccgcgct gaatgagcct ctaacatccc ctgatcccat
      301 tatattgtga ttaattgtgc cagtttaagt caataattca tttgttaaaa ataggcctgc
      361 gcgggatcat ttgtctcggg ggagatatca gaataaaaaa aatcatttga tacttctcat
      421 taaattagtg ttgggagctc tcttgaaggg ttctgttcat gaaacattta ttgcgggctt
      481 atttgataag gacttgtatt tgtctggagc gatggctgct aacagatgta acggc
//
LOCUS       KCLA01001145             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18601upu ultra-conserved element locus uce-5130,
            sequence.
ACCESSION   KCLA01001145
VERSION     KCLA01001145.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18601upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-5130"
BASE COUNT           71 a          119 c           40 g          114 t
ORIGIN      
        1 ccccgggatg ctccttcatc cccgcagcgt cagtttcaag agcccccgac ctttaataat
       61 catttctgct gttatctgaa cacttcctaa ttcatcccct cctgtccctg aaaatctaaa
      121 tcccatttaa gttaatgccc ttcattttca tttgtaaaga cagatacaaa acaattattt
      181 cctatctctg ctgttccctt atcttccgtc ctaataattc ctcgctgtct ctctttcatc
      241 atctgtctgc agaacaagaa acttctctgt aagttaaact attccctctc ttcagtctcc
      301 tcctcctccc tctccggccg cttcccccgc cgtccctgcc ctcg
//
LOCUS       KCLA01001146             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18616upu ultra-conserved element locus uce-7210,
            sequence.
ACCESSION   KCLA01001146
VERSION     KCLA01001146.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18616upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-7210"
BASE COUNT          169 a           91 c          111 g          186 t
ORIGIN      
        1 tgggatctct ctatttctgg ctcaagagag aaattctgaa gctgctgctg atttgaaacg
       61 ggtcctgaag agaaggaagg gaggaaatga gaattttttt aacttaccaa attgtcttgc
      121 ctgtgtaata acactgagca cgactgtcac tctgaagaca tattagctca tttaggtaat
      181 tagtgtgagc agcatgtttc cctgcttatt ccattcaatt atagggtgct cactttgtca
      241 ttactggagt atcttaatgt gacttgtaat tagtgtaatt acaatccaat gttaattata
      301 tctgccactt agacataatt ttatatagta atggtcttat tctcaataac cttattatgt
      361 tgtttattca aacaggaatt tagccttctt tcatgcgtcg aatatggaga ttgcaaaaag
      421 tactgcctgt catttctggc ctcctgacta ggggagcttt gcattgcaaa atcatatttg
      481 gggcaatcaa tgaatggaga aaactaaatt agagagactg attattagag acatgctgaa
      541 ctaacaaaaa tcatgtg
//
LOCUS       KCLA01001147             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18647upu ultra-conserved element locus uce-5147,
            sequence.
ACCESSION   KCLA01001147
VERSION     KCLA01001147.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18647upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-5147"
BASE COUNT          249 a          151 c          159 g          146 t
ORIGIN      
        1 acacaagtgc acaaaaaccc cgtggattta caccccactc tagcactcga gagaaaaaga
       61 agagactaac aggttaagat ccaggtttag gtgctgagct gttacaaaga gtggttcact
      121 ttgcacttgg acagtgttaa aacaatgttt taatgaggat gctagtgcag aaatgagaga
      181 ttaaacacaa agagacacag acagctacca catgcaggaa aacgaggtta caggcacagc
      241 agcaccaggc gctcgcccat caccgcgggg aggaggaagg gacaggcata gcaaccacaa
      301 gcccaaaagc agaaaagcgc ataccttcag cttggaatga aaatcacgag atttccttct
      361 ggcaagaacc tgaatgtgac tagacacctg cagggtaggg gaagggagga aacaaaggaa
      421 aagcctgtaa ccatggagat gaaaagcccc ctacaactgg gcaagccaaa cgtaccttaa
      481 tggcggcttg aatttctcga actttctttc ttgctaagac ctgtatgtga ctagacacct
      541 acattgttca ggtttatagg ggggaaaaac aaacaaaaga aaaacaaaaa gcaaatcaaa
      601 ttttaaatgt ctactttttc tattaaaaac ccaaaacttt tctgagggga ggaagttatt
      661 tgcatcttca gtaagctctg ctcttaaaga taccacattc ccagc
//
LOCUS       KCLA01001148             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18663upu ultra-conserved element locus uce-4098,
            sequence.
ACCESSION   KCLA01001148
VERSION     KCLA01001148.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18663upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-4098"
BASE COUNT          209 a          183 c          145 g          301 t
ORIGIN      
        1 atctgtaaag gattgcagtg cctaccttgt aaatagcagg atgaaattgc catgttattt
       61 aatttaaaaa ttttatggca atttatcaat tgctcttttt atgagttaca cattttggtg
      121 tgtagcctgt gtctgcagtt gacttacatc tctaaatatt ttgaagttgt ttccatgttt
      181 aacaaccggg aattccataa ccacacggag gtacctatac cattcattcc tgaataactt
      241 cccacatccc ctgttacgtc agcaactctg ccattaaatg ccacatctat ctttgccttc
      301 atgttcctct cacgttgttg caccccaagg aaactagagc tggcatgtga attactttgc
      361 ttcttttttt tgttttctct ctctctattc tcctaggcct agtagatgct gcagtcgatg
      421 cagcttccca agcaggtgtg tttgtatgtt gcatggccag tctgtaactg ggtggaagac
      481 tcacatgtac tgacactgtt aatcaggatt attgggcttt tggcttactg acgttacctg
      541 taatccttac tggcctgcag ctttgatgtt gtgttgcata ctcagtttta cattccacta
      601 acaccatttc ttatcatttc tgagcattac aagcaaattc atgaataacc atcatcttat
      661 tcacctatga attactgaga tagtattgga gggatatttt tacagccttc cccccctttt
      721 atttccaaat acattgagta atctgttacg ataactctac actctatttt ggggatatct
      781 gctggttacc attcgttaaa catgatgtaa gatgatggta cctaaaggat cttcctcc
//
LOCUS       KCLA01001149            1184 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18678upu ultra-conserved element locus uce-4509,
            sequence.
ACCESSION   KCLA01001149
VERSION     KCLA01001149.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18678upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1184
                     /note="ultra-conserved element locus uce-4509"
BASE COUNT          255 a          238 c          251 g          440 t
ORIGIN      
        1 agggaatgct aactggattt cttctctgaa ttcagttatt tcagtttttc ccctgttgaa
       61 tgtatttttg aagagactga acatcgattc taatgtatgt tttccctgac attggagaag
      121 tacaaacaga aaatagaaac agacttcttg gaagagtttt ctgtagaatt ttttttaatg
      181 aattgttgca aatattttgg acctacttga atcatgtccc tgtatctaca gttgcacagg
      241 accatttcat aattggatgc ttctgccagg atttagcttt cttatgtatc gcaaccttta
      301 ttttgtccca tgcactggag agtagtgctg caagcttggc ctggtgtctg cagaaagttg
      361 agggactttt ctctctgtat attgtctaca tactctttgg tccacacttt gaggcttatt
      421 cttgtgtgtc atttaatgca tttcaccctt ccaacctcaa gttgctaaca tcatgtagtg
      481 gtgttctgtc tcttctctcc tttctctgtt cttcccgttt ttgttttctc acaggctgtg
      541 cgaagtttaa ctgtgcatct gagagagtga cgttcaagcc tggtggcagg aggacccgat
      601 ttctgagtac gccctgcttg gctctttgtg tgtaacacct ttactccttc cttgtctgtt
      661 ttttgttttg tctttttgtt tttttttctg ctgcttggat ctgtttcatg cagcccatcc
      721 tcacctgcca ccttgtattc ccccccatcc catggctcag acaagctgct cttagcatat
      781 ctttagaagt ttgggttctt gtgtttcatt gttaaactca caataacaaa cactcctttt
      841 ctggaagctt ttggtggaag catttaggac agttcagcaa aatgtcaaag tggggagaag
      901 ttagcctctt gagggtgcat agtcgttttt gtttggcctg ttttagcagt tgtgcttcag
      961 tgtaagttag gagatttgga ggggaggtag tgtttctagt gagacagcaa ggaagatttt
     1021 ttttctaagt tattcttttg ttgaacatga ttgtatctga tggagaaaat acactgtcct
     1081 cctccagcag tccctttgcc ttgtctcagc actagtgctg attacagtac agaggactga
     1141 tgccacctgt aggcagttaa tatcgcttct catgtttgtt agga
//
LOCUS       KCLA01001150             722 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18707upu ultra-conserved element locus uce-5289,
            sequence.
ACCESSION   KCLA01001150
VERSION     KCLA01001150.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 722)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..722
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18707upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>722
                     /note="ultra-conserved element locus uce-5289"
BASE COUNT          208 a          164 c          178 g          172 t
ORIGIN      
        1 cctacagatg caaattttct ctgaaagtga agcaaaccta ctcctgtgat ttgatgcttc
       61 agcagcttca ccagtacatc catcaaactc cacgccaagg ggagcttttt cagcacggcc
      121 tacaacaggc tgccagctct gtgccagtgc ccgttgtgac tgatgttact gcagaagttg
      181 ttagggattc tgctccaaac tggtaaatat ttgtgtcctc agcctcttgc tgaattacac
      241 atgaagacac cgaccaggca aaaccagcac gtagcgtgac gtaccttgct atgtgcataa
      301 actactgaac ctaacaattt ccaagtgcct cctcttcggt ccatgcgcac catgcgaagg
      361 atctgtagga aacgaagact tctcagtgct gatgttgcaa aaatgttacc ctgagttttt
      421 gcagaaacaa ctgctattga agcgatgaga acaacgatgt ctgaaagaaa tacattacag
      481 aaagcattaa tgtctgagca ataccaaaca acgcacgcac gcacacgagc tgggtgaagg
      541 ggcagcactg aggctcctgt gctgggtggg aatctgaagc actgaggttc ctggttgagt
      601 aaggatgtgg ggtcagggct ggcataaaaa aactacctca gagcctccat ggtgaaaact
      661 gagggtggta tttttaaaac catatggata aggggagcag tgttgaggga actcatgtag
      721 ga
//
LOCUS       KCLA01001151             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18723upu ultra-conserved element locus uce-3430,
            sequence.
ACCESSION   KCLA01001151
VERSION     KCLA01001151.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18723upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-3430"
BASE COUNT          231 a          174 c          130 g          258 t
ORIGIN      
        1 tgagactatt ctagagcaat atgtatggta ttgcctcctt tcagtttatt atcttaatct
       61 atttctctcc actaaagaga aaggatccct gctcatcttc ctgctgtccc ttcaccccca
      121 cccaaagtgg caattgtacc attaagcctt aagtgcttta catgtgcaaa cacaaaccca
      181 gtgctgatag gaaagatctt ccctatccat atgttcatct ccatcccttt acctaaacca
      241 gatgattacc tcagcagctc agctgtgtta ttgagacatt tcagcgtgaa atttgttttt
      301 cctcactgaa ctttaagcag aatttcgagt gccaagtctc caaagccaag tggggctatt
      361 aagagataat tactaattat gctaatttga gaagttgtgc tatttctttc cctggtcatt
      421 ttatctgcag ctctcctgag agaacagccc cattcaacat taataacctt tccaggctaa
      481 gcattcaatg gaggacaatg tgtcctaaac cctggaatat tttacagtta atctagacac
      541 gtggatgtaa attagaaaga agcaagttgc actaatgcta atgacttatg ttattaattt
      601 tttgcagcag cagaaatatc tgattccttt ccattcatat attgatcagc attttgctga
      661 tggttttact gtaagtgaaa gagtcctcag tgactcgaaa tactcagtgc accgataata
      721 tcagcgatca ttttctaatc ctaccttttg caacctctta tcgtaataga ttcaaacaaa
      781 ggacagattt gat
//
LOCUS       KCLA01001152             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18738upu ultra-conserved element locus uce-5955,
            sequence.
ACCESSION   KCLA01001152
VERSION     KCLA01001152.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18738upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-5955"
BASE COUNT          257 a          189 c          113 g          273 t
ORIGIN      
        1 actcctgctt gacaaaagct tgcttgtcct cattaaaaaa ttatacagct agctgtgtat
       61 tttcaacaaa aaccagactc atcaaattca tttctcatac gaatgactga agcttcatct
      121 atacggcggc acaaagaaac taccaaaaaa tgacgacaac tgccaagtat ctgcttctca
      181 gccttctgcc cctacaaaac acgggtttga taaaacccgc ttttaaaaac acgtatcctt
      241 gcaaatcttt agcactatcc tctcatctcc ctgttggagt ttgattgatt acaccttttc
      301 cttatgttca ttaatctcat caccttatct tttacaccac ttcattttag cagaaaggca
      361 ataataaaac cctcatccat tatcctttta cgcatctact caagcggaaa tggttaataa
      421 catgctacaa attgaacttc aatcacctca ttttctcctt tgtcgaagga acattaaagt
      481 atattccaaa agtgcaattt gttttacagg ggaatttgtg ttatattgct acagacaact
      541 aaaattaagt gttgctcagt ttggttatta aatatatcca actgtccttt tatctctcat
      601 actaaaacat taactcattt tattagggtg taataataca agagccttat ctcccggaac
      661 acagggccat ctcgtctgcc caatattaag tattctacaa taggtcagtt atctttttca
      721 tacgcctctg atagtttatg aattggtaca ttattgcagg tgaaatggct ccccatttca
      781 gaacagttaa tttgtttaca tgcaggctta tcttcaaacg caagccccat ta
//
LOCUS       KCLA01001153             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18753upu ultra-conserved element locus uce-7415,
            sequence.
ACCESSION   KCLA01001153
VERSION     KCLA01001153.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18753upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-7415"
BASE COUNT          203 a           98 c          120 g          176 t
ORIGIN      
        1 gcaaaaatct ggtaagataa gtctctataa agccttagaa gtcaagcatt ccactttaga
       61 catttaagac aaatgcatgg caaaaacaag ttgttttttt aaggtttcta cttaaagttc
      121 tgtgccaaag ctacagtact tatacatttt ctaaatgtgt tttaagcaat aagttgtaca
      181 acatttttag aacatgtgtt aagctatttc tctaagaatg aagctcttaa caaaacataa
      241 gcactctgca tgagatctta gcagcaaagt gcttaaaaga taaagtaaga attggtacca
      301 tgggaagaac accagctgta gagcacacag gtccattatg agaagtatgg tagtgggtag
      361 ggagaaaatg atttaatcag gagtaaaacc aattttatta taagggcacg cagggggtgt
      421 ggcaccatag tgagagggac atttcaaaat atctgacaga tttcaacaat gtgaaaaccc
      481 accctgttct ttaaagtgac agtaaacccc atcaggtctc tctttttgat gctattgtta
      541 acagttgact gtttaaagct ggcctgctaa gatgctgtcg atctagttca atagtgt
//
LOCUS       KCLA01001154            1148 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18769upu ultra-conserved element locus uce-6138,
            sequence.
ACCESSION   KCLA01001154
VERSION     KCLA01001154.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18769upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1148
                     /note="ultra-conserved element locus uce-6138"
BASE COUNT          272 a          266 c          283 g          327 t
ORIGIN      
        1 gagggtgctt gagttaggac tgggaagaaa gctaaattgg ggtttccttg ggtcttccaa
       61 ggccgttggg ttgtggaaag gagcttcact gattgggagt ggttagcaga aggcagagag
      121 aaggggaggt gtcccaagtc tgggctgctt tttctgcata catgttatgc atcgatttct
      181 cattttcctc ctcctccttt tcctcactcc ttttttcttt cctggggcaa ccatcctgct
      241 agccatttct tctgtgaaga aggcattcct tctcttgttg gatgcgtctc actctggcaa
      301 gacacctgaa ttcataaacc aacctgcccc aggatgcaga gggcttcatt tcggatcata
      361 agaaaggtta tctttcttct acaacggggt caatctgggc ggcggggggg gaacccaaac
      421 aaacccacct gtgcgaagac cgctcctgcc tgtgaaaagc gtgcttgcat ccactggaaa
      481 gaaaaggctg gtgagccccg ccgcgggctg tttgtatgat tgtttctttc cacagctgtg
      541 tttttttgaa ctgctcttcc tgtgttctgt tatagaatag tcttacagga accaatcatt
      601 agcgctaaaa tacctcaggt aggagtgcca gtgtgacctg ccaacgaatc agattgtgga
      661 ttgcagtgga aaaaactgaa ttatactaac cattccagca ccacgttaga gatgggaaca
      721 gaggcttttt tagagcagcg cagactcatg tgtgatccaa gcccctgctg tagcggggtg
      781 gcgtgtgtcc agatttcaca ccgagtggca tttcattcta aaccaaaatc cagttaattc
      841 aacggaaggg ttaacaaggt catgcttgtc ccattaccat gtagaagcac ctgctgcaat
      901 ggacactgtt gtcctgtcac ctcttttaat tcattcatgc tcattcctgg tgcacatatg
      961 ccacccttct gatacaggaa tactgggaat ggttctagcc ctctctgctt cttaacttct
     1021 gtgatagggc agtttggggt cagagaagac agatttgaga tagaaaagat cctaagatcg
     1081 ggtttgctgc ctaaacctgg caggtggtca aacatatctg tctgctccca tgagttacag
     1141 tttctcca
//
LOCUS       KCLA01001155             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18785upu ultra-conserved element locus uce-1014,
            sequence.
ACCESSION   KCLA01001155
VERSION     KCLA01001155.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18785upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-1014"
BASE COUNT          291 a          155 c          176 g          274 t
ORIGIN      
        1 tttgctaccc ttgacaacac atagtaaatt cagttcttgt ccaacactaa tttttaaatg
       61 ataaacaaaa gcacagtagg agttgtggaa ataccattca gccatgttaa ctgagtttgt
      121 caggcactgg tattttgtat ttttattttg ttttagaaaa attaattgca ttaactgtat
      181 taaaatccct cttcagaatt agagcaatgt tcaaggctaa atataaacct caggaaaggt
      241 agaagaatct ttaatttatg aaactgaaca agtcgactta tctaaacatc tctagggctt
      301 taatggggga tatcaataat tctctgaatt gtattccttt cacagtgata ttttgtaatt
      361 ccattctatt acccttgctt aacattaatg agataaaaag atcacattat ggcgattgat
      421 gttcttcaaa ttaaatgcac gtttccatgt acaaagctgt ctgctaattt aaaaaacata
      481 gcatgtaaca tagaatcatg accatggtca tcactcagct gggatcagat agcatttttt
      541 atctattcat tggatttaac aaggcatgag atggaagcag aatacaaagt gtgggtagat
      601 tatcccatat cccccttttg gccacttctt ggcaatctca gcaaggaaac tgaggcttca
      661 tgttgccatg gaaataaacc tcaaggtcaa aggggcatat ggaaggtcag gcaatgacaa
      721 aggaacatct gagaggccat ctggatgagt gacctgacat aattagtcat taatcccact
      781 cttgggaaca atagagttag gcgagaatgt gtttggactt tgatcgtggt cagggtgatc
      841 tcatggggaa aagggaagaa cgcttcactt ggtaactaag cagattaccc tggcat
//
LOCUS       KCLA01001156             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18800upu ultra-conserved element locus uce-4118,
            sequence.
ACCESSION   KCLA01001156
VERSION     KCLA01001156.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18800upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-4118"
BASE COUNT          236 a          170 c          167 g          231 t
ORIGIN      
        1 attcccgaag tgggagtgga aactgagtcc tccatgactt taaaagtcag ggaacaaaac
       61 caacaagaag gtgaagtaag acagcaggaa acgtatactt taccatctcc tggaatgatg
      121 cgcagggtaa ccgtgtttcc cgcttcctta atgaggttga cgatgtctga atgcgacttg
      181 ttggtgatgg agcacccatt cacagccaag atccgatcgc ctactttcag cttggcgcag
      241 cggtcagcgg gactcccttc aattatccga cctattttgt gaggcatggc cacacatgca
      301 tttcccgctt ttgtattggt ttggggggtt ttggttgttt ggtttggttt ttaattgttt
      361 acatacatgg gaatatggtg aaggggaaaa ggagaaaaag ggttgaaaag ggaaagagaa
      421 ggttaagggt taattaatta atgcatcaag caaaagttat tataggatag ctttgctgcc
      481 aatgttcaaa acattggcaa tcaactacta cgagtgcaca aactttacct cgtttaccaa
      541 aaggagcttt gttaatcact caaaactccc tctaccttca ttttcactaa tgaatgatga
      601 catttttata gactacaact gcatgtagca gcccatcaga gaccaatccc gattttaatt
      661 ttgacaaaac aaattagagc tttctgttga aaacacaacc ttccctctcc aagactaaat
      721 cagcagcagc ctctccagtc cttctctaaa tcaactgcta cccaagcttc tgccaatgtt
      781 ttgttctttc tcattttaga aaga
//
LOCUS       KCLA01001157            1040 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18815upu ultra-conserved element locus uce-7016,
            sequence.
ACCESSION   KCLA01001157
VERSION     KCLA01001157.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18815upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1040
                     /note="ultra-conserved element locus uce-7016"
BASE COUNT          313 a          207 c          197 g          323 t
ORIGIN      
        1 attaatctat acattgatac caattatctt acctgcggtg tcaatgctgc tcttgccgga
       61 cacggttttc aatatcatct tctcactggg taataaaaag aaaagtcatc attttaactt
      121 gctaccacac tgcagttaag ttcatcagca gcaaattaaa tagccttata cagacatatt
      181 gaatttaaat caccagtggc ttgtcagttt cttttttaat cagcttgtgg tacaagttaa
      241 gcaaggtaga agcaggagaa agcagagata tagcgacatt cattcatttt caacacaaag
      301 aagagtaatg cagataatct ccatctatca tcggattatt cttcctttct gcctagcgtt
      361 ctcacgggga tgatgaagat attgaaaacg attgagcatt cggggggttt ttactattac
      421 attcaagtag tatttttgtt gattgagtat taaaatcatt acagagaaac agattgaatg
      481 aattcttttt ttacctagaa gcatctttgc tattacttgt atttggccct ttaaaaagcg
      541 cagactgaac aagaccagtt aaactggcaa tctgtttctc catggcttgt atcctctctc
      601 tgtaagacaa gagaaccgtt tgttaaagcc ggatatattt gctttcagac ttgtttttct
      661 aggtgagtga ttaccacagg actgcaaaga cgctacagat tttgtgcaaa ggcccgtggg
      721 taccactttg tacctcgttg cagcagctta ccgcatctcg ctttggccag cttttgcgtg
      781 gtaacagaga ataagaaaga catctgctcg attagaaaag aacaaaacaa ccaaccacca
      841 gataataaac tgctaatgat ctcataaaac aggcagctaa accaatcagt tgatgcttct
      901 tgcaactcgt ggaaataagg tttgtcagcg ttacgtatgt tttccttctc acagaatcag
      961 cctgcgtgta aggtttaagg attaaggaca tgacacttgg tgtgactatt tttactctcc
     1021 ccaaacccag gatttttgcc
//
LOCUS       KCLA01001158             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18831upu ultra-conserved element locus uce-6762,
            sequence.
ACCESSION   KCLA01001158
VERSION     KCLA01001158.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18831upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-6762"
BASE COUNT          165 a          131 c          142 g          221 t
ORIGIN      
        1 tgaaaaagtg tgtagtgctt gctagagcga agaggatcca ttctctcata cctcttagga
       61 aaaagagatt ttttattatg tgcctttaaa gttagtagtt gatatggaca cctgaggagt
      121 tcatgggttt cagtgacctt ttactgtgga cctgtttcca gtcaattcat gttttcctca
      181 tagccagaca gctgtttatt atcgtgtctt ctcgcattct ctacaatatt ttctactgag
      241 acctcgagca gcttgttagt gggaagtaaa tattgatttg gcatcctgtc aatgcagaaa
      301 gaatgaaaaa attttcacca gaggcccctc aaacattttc ctatcgacat ttgctgggca
      361 gagaggaaag ctgcatagag gatgacaagg ctgagactag cagaaatccc tgaggggtcc
      421 attgagactg ctgctgtgac ctgtgtgata ctttttcttc tctttcaagt ctttttttta
      481 atacacacag agtctgctgg gatgctcccc tcttgtaagt gatcaagggc agtttattgg
      541 caggtgagag ccctgctttt ctagccatag ttggcttttg tttggacatc actgacaaca
      601 tacactgact cttgaaactt ttccattatg ttttatttgt ctcccttatt cagacagtg
//
LOCUS       KCLA01001159             999 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18847upu ultra-conserved element locus uce-175,
            sequence.
ACCESSION   KCLA01001159
VERSION     KCLA01001159.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 999)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>999
                     /note="ultra-conserved element locus uce-175"
BASE COUNT          312 a          208 c          186 g          293 t
ORIGIN      
        1 gtaatgaagt gttaacaaaa accatatgaa gttattacta caaccacagg ccacagaatg
       61 tgaaggaagg aggatctcag gagacctacc tatttccagt catctcctgc ttcacagttc
      121 atcaaaaggt gttcaccaaa acaggaggca agcaacagaa attgattcat taggcctaat
      181 gaacaatgct gatcatttca tctctaaaac gcagccagcc gacattgata tatacatact
      241 ttaactcatt cttcccaact ttattaggta catatgtcta cagcagacac aaatgaaaca
      301 ttctacaact aggctccaag ccaaaaacta atttattctt taatgtggta gtgattattt
      361 ggtggttcct tgagcagaga tgacaggtct gagctaatgg agttgtactg taagttaata
      421 taaatcatga cagagcaatt aattacagaa accactgcaa atccctttgt tagttttccc
      481 catcaccaga aggatttaat aatgttcatt ttgctaagtt ccagtgacat ttacaagtct
      541 taaaccattt ttaatcaaat caatagctct ggctgctaaa tttagttgtg cttttctatc
      601 aagtcctgga atgcattgat actaatgttt cctaccttct gttcaagtaa actgcactga
      661 agccccacac ttcccctttg tttgttcaca ttgagtagtt tgggtttttt tataatgagc
      721 accacaagaa atcagtgcgt tcaaaggagt taggagacag caggctagac agatatacaa
      781 ataccagtgg ttacgatacg catcatgtag ttaaaaaatt gaaggaaatt tcccttaatt
      841 gcctgaaagc tccaaaccag aggaccgtgc cttgctggga accagggttc tcagagcgtg
      901 ggcaggaccg tgtggctaat ccaagataca gtgcacagtg aactctttct gtccctatgt
      961 gttcctggat ctgtacctaa gtgtctaaac ttcccagtt
//
LOCUS       KCLA01001160             987 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18862upu ultra-conserved element locus uce-7453,
            sequence.
ACCESSION   KCLA01001160
VERSION     KCLA01001160.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18862upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>987
                     /note="ultra-conserved element locus uce-7453"
BASE COUNT          262 a          241 c          251 g          233 t
ORIGIN      
        1 ttaaaacgaa tcctttttat gccactgttt tatctcttgc acaggaaaac gtgccaccag
       61 ctaacttccc agctttctga gctagaaaga aagaatccat tagcacaaga gctcgctcct
      121 aacttgctca accctggtgt ctgataccga tcgataggca aactagcgtt tcatttacag
      181 atggagcaag gctagagctc aacatcaggc gtggaggaac gttccacaga ccacacacac
      241 aatgggcaca tgcggtggag ttggatgtcc agggatgcgt ggggaggtgc caagcacacg
      301 atttcagtcg atggagttga agggaaaaat aacgacaccc caaaaccata aacacagaaa
      361 actcttcatg agcacaggat gaagaaacgg tcggggaagc ggagccaaag gaacgagaca
      421 gaatgggcat gatgacgtgt gtgtacttga aggtctgacc tgttagctgg tcgtcgcctg
      481 cggcaggggc gatgcgaatg tatggtgttg taagctgagt cacgattatc gcagctaagg
      541 caaaggaaga gttccaggtc agcatgcatg agggaaaaaa aagccagact gaagctaggc
      601 cagcaagaac cttggtcaat agtttatcgt ctccacttct caccaataaa cactatgaac
      661 tccccacaag gtcctttttg ttccggttag ctcggttatt gtgccaatta acgaccctcc
      721 gtgcgtgact tccattcacc aggactcaat gctcttcatc tacttgtgat gccggggagg
      781 gaactgggga ctttggctcc gctagttgca gcagagggct ttgtaaggca cctgcttatg
      841 cggacccatg tggcatggac ttccccaggt cgttctgact agtttcactc cttgcctatt
      901 tcagaacagt tcagcatcgc cttttaggat cagcttcacg tgaagcggtt ctgagctagc
      961 tgcgactcat cctgctcata cccgctt
//
LOCUS       KCLA01001161             360 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18877upu ultra-conserved element locus uce-1050,
            sequence.
ACCESSION   KCLA01001161
VERSION     KCLA01001161.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>360
                     /note="ultra-conserved element locus uce-1050"
BASE COUNT          114 a           58 c           77 g          111 t
ORIGIN      
        1 taaattatta tttcaatatt tattggaatc tcagaataag aaagaagaca gattacacag
       61 atccatctgg gctgattaat gggtgctctg gcgaaaggcc cgtgctgatg gagtgggtca
      121 gtatgcagac tatattactg aatatttcag ctcggttgta aatatagtat ctgtttctct
      181 tagggactgt cacactgagt gcagtataaa aggcaataaa tttcaacaga ttaattaact
      241 ctttggttac tggggctgtg tgtcacctat cctggcacct aataaaaaat cctttaatgc
      301 caagacataa agaagggcct ctttggaaat gagttattaa cagcatttcg tgaatagatg
//
LOCUS       KCLA01001162             303 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18893upu ultra-conserved element locus uce-366,
            sequence.
ACCESSION   KCLA01001162
VERSION     KCLA01001162.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>303
                     /note="ultra-conserved element locus uce-366"
BASE COUNT          103 a           51 c           66 g           83 t
ORIGIN      
        1 ggcttgtgtg aaaagataat taagtgcttt agagagtgtc aagagtcaat agctcagcac
       61 tgtcagcatt cttgagtgtt acaggctata attagatggc atggaggcgt aagggatgtt
      121 tggcagttta tttcagtgtg atctccaggg taaaaataaa gagctgcctc aaaatgagac
      181 agtatgagag aagagaacag gaagattaaa aaagaataca tgcttttcag tgacttgcac
      241 aaattgctac attatgaaaa tgccactctc ttaaaaattt ccatccatcc atccatccat
      301 cca
//
LOCUS       KCLA01001163             952 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18908upu ultra-conserved element locus uce-1540,
            sequence.
ACCESSION   KCLA01001163
VERSION     KCLA01001163.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18908upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>952
                     /note="ultra-conserved element locus uce-1540"
BASE COUNT          314 a          195 c          157 g          286 t
ORIGIN      
        1 actcttaggg ctctgagtca catggaataa cttttttcct attaagttca gtcttgttct
       61 ttgagcattg atcctgcaaa atgggaaaaa cctctggatc aagcagaaat agatcaaact
      121 atttctaaaa tgttcagaaa taaaccttca tgtgtgacca cagagagttt gttacctgta
      181 aatgcagaca gcatctgtct gtctccccca aacaatacaa gcatgtagac gttccagaaa
      241 tacagttgca tttcacctgg cagtttgatg cagcgtactt gcacatgaca acacattgat
      301 tttacttcta cctccatgca gacatctacg taaagaaatc cattaggcag acagttctca
      361 tctctattga ctgacagagt gacaatcgaa tacttttcac cttccaaact gactgacagc
      421 tagacactta aacaagcctt caagttgcaa taatagtatg aaacactttc aattacctga
      481 atcaaacaaa tccatgatcc cactagttga atgtattttt ctgtctgctg ctatgcctgg
      541 cttggtttac attgttgttt gggcagttta gatccctaac aagaacactg caaacaaaca
      601 gcagcctagg gtttctaaag aatgagtata tctgaagtag tcttcctaaa tgtaagaaaa
      661 aaataaatgc aggcagcctt ttgaatccct tcctctccag cctagcatgg aagcaaatct
      721 tttaaactta cataaatgca cgggaaatag ctacatcgtt agataagtgt ctctgtaata
      781 ctagcaaacg ttaaatgcca gcctgccttt aaaaggtgaa catttgtatt tttttagtaa
      841 aatgaaatca taacaaacac cattttaact ttgggcttat atatatgaac agattgggca
      901 gttttctaat gcaaattgta atgaatgaaa ttccctccaa ttaaaatctg aa
//
LOCUS       KCLA01001164             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18923upu ultra-conserved element locus uce-3213,
            sequence.
ACCESSION   KCLA01001164
VERSION     KCLA01001164.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18923upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-3213"
BASE COUNT          138 a          159 c          161 g          163 t
ORIGIN      
        1 gcaggagaag gacccagctc aggggattga agggaggaaa agctgctttt cactttcccc
       61 agtgctccgc tgggaagttt tggccgctcg cttctccatc tcccagccga ggcctctcat
      121 gctacttcca gctcctatga taatgcggaa agttgaactg gccccattac tgcgctgcga
      181 tggttgcctc gataacaccc cgataatggc agcgatagcg gcagctcggt agccaatggc
      241 tctgccgctc ctcccattaa cattccccac cacggaccgg ctcggagctg cctatctgct
      301 ctccatttcc actcctccac tagataagaa tggaaatact gacttcatag ctcactgatt
      361 aaagtgtctg gatttcttga taatacacag ataaattatg tttttcaaaa agaaggtagg
      421 gaagggagtg tgaggggagg gaaaaacctt cagtccattt ttattttatt tttttttttg
      481 cttttttctt actggccatg ccctggggct tggggatttt ctactccaga atgcaccccc
      541 agcctgtgcc caaggttggc aatgggaaga cagagcccgg tgccctcagc tggggggggc
      601 gtgggggggg tcagagaatt t
//
LOCUS       KCLA01001165            1152 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18939upu ultra-conserved element locus uce-5521,
            sequence.
ACCESSION   KCLA01001165
VERSION     KCLA01001165.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18939upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1152
                     /note="ultra-conserved element locus uce-5521"
BASE COUNT          345 a          238 c          262 g          307 t
ORIGIN      
        1 ttattttcac tcactgaact aaaaatgttc agcaaaatgg aaacacgacc ttggaaagtc
       61 accttatggg atatatcctg aggttgggag ctggggcaga gatgtaaccc tttcctcccc
      121 tctcttggag ccagcaaagg tgaggcacac ttggcaaatt acagattggt tttccatagg
      181 atatcccgca cagcagcgtc tcctggtgaa tgacaaatgt ggacacaaag accaggggga
      241 tgccaagaga gggaagggta tcagctgcag taccatgagt tcagctacaa acacgtctgg
      301 gcaactgaac cccaagttct ccagcagtga tttgctgtgt caaaacaagg aatcaccaaa
      361 ccaaaagcat gaaagtgttc agctggagtg acctttgcaa gaaatctggg gaaaaagaaa
      421 agagcaggat ctttccttcc taggggggac tgcgaatcgt ctcccaactg cactcctgag
      481 cgtgaatcaa ttttcttcca gtcgataact agcgcaaagg ttctaacctt catttgtgct
      541 ccaaatactc aatcggggat gtagaacaca taccaattaa gcaattcagc taaaataaga
      601 aggccgtgaa ccaacattgt tgctgcagct gcccctgagg gatcgtgggt tagcagcttg
      661 gggaaaaggt aatttattga gcttaatact ctgcgaaatg ttctcatgat aataagattg
      721 taagatcgtt ttaatatctg aagtcatgtt gaaaaggtca tttctcatct tttacgccta
      781 cctaagtcat gtaaattaga gctactcaaa cagagttgag gctgtttgca gcctaagttt
      841 ttctatattt ttggatgaca gagagaactg tcagtgatac caagtgctgg acacggtcag
      901 acgttgacca tgagttttag aacagcaaca tcaacagatc cagctgcttt tgctatgcat
      961 taggccacca tttcatcttt gacctagcag attttactca gataattttc ctcctttctg
     1021 atgttatggt ttgaagatgt aaaaaaatta ttccaagcac attgcatgtg atctgaaagg
     1081 ggaggggaac acaactgaag tgtttgccag aggttttctg tcccaggaaa atggagcact
     1141 ggcaatttca ca
//
LOCUS       KCLA01001166             991 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18954upu ultra-conserved element locus uce-2293,
            sequence.
ACCESSION   KCLA01001166
VERSION     KCLA01001166.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18954upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>991
                     /note="ultra-conserved element locus uce-2293"
BASE COUNT          328 a          199 c          195 g          269 t
ORIGIN      
        1 ttctgcactt taataactac caggaggtca gccacttatt agatagagta aaaggaccca
       61 ttcctaaaat ttagttaact ttagaatcat gggaaagtta gtaacatgga tagttccctt
      121 ctcctgggca cagttaagga gacaagctat agataataac cactctgggg tcaatacagg
      181 gaaggtggcc aaaaactgaa aatgtatgaa tgacagaaca agaaggagat attgtttgca
      241 aggctaactt tcattcccta aattagcaca gtaaaggcta tagaaaggaa agaaaatcca
      301 gtattttagg aaattattta tgaaatgtag atggccttca gctgggaata gggctgggca
      361 aaatgttagt ggctctttgt tcttgcagct ggcctgtcga attacacaga gccagcacag
      421 taaataatac tactattgtc tgcctgtgtc agagacagac agaaggtaca tttggacttg
      481 gtccaaacac cacaagggcc actcatagcc acagtgtcca attactgctt gcttgactat
      541 aaaacgcact ttttttgctg agctaattta agaacggcag cttttaatgg ggtttgtatt
      601 aaaagcggac tgctgctctg gctcttgcct gcaaaaaaag ttatacactg tagaggaaac
      661 aacacataca cagtgaaaat aaccagagta tgataacatt agcacagcag taacaactgt
      721 gatggcaaag tcaatgcttt gcgaaggaaa aaaaagatca acccttcttg gaataacctt
      781 gtgcaaaatc actgcaaaaa ccaactagcc tctgccttga aggatgaaac aagtgcatcc
      841 actcagtcct tgcagatgtg agcatactgc atagcttcct tcatctttca aagaatcatt
      901 gaccactttt cccactgcac caatactttt cttcaacttt cagttgcatt ccttttcact
      961 tgctttggaa agcaataaac tctatgattt a
//
LOCUS       KCLA01001167             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18970upu ultra-conserved element locus uce-88,
            sequence.
ACCESSION   KCLA01001167
VERSION     KCLA01001167.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-88"
BASE COUNT          315 a          206 c          171 g          296 t
ORIGIN      
        1 atgaatgtga acgtcattgc tcatatctca ggcaactact cacatcttaa ttgaaaatga
       61 tcaaataaca acattccttt tgacaaacaa atgacaatgt atcaccacta ttaccaaaca
      121 tgatagagct gaaaagccag gagcagcagc tggcattgcc cataagacag tgcgcataca
      181 cacacatatg tcccagacct ggctggtgtt ttcttccacc tcagagccac caaggatgat
      241 gctcctgact ccagaaatgt gcttccgctt tctcaggttt gatttctcct tctccccagg
      301 cacctcactt ttgtttctgc atgggagctg caggtcagtg ccatgatgac agagcagttg
      361 ttcctctcac ctcttctgac tctttgcaat gtaatttagg atgatcccgc cacctcagtg
      421 ctaggaggac cagaggtttg atagcaccat agtcaaaggc cacagagatg agaagcgttt
      481 gcagagcagc aattgaagtc ttttctgagc caactgttcc acctggaccc cactacaaat
      541 tattgttttc aattaccacc tgtatactcc ttcccatgca acttattgat gtaaaattac
      601 aacaacactg gtataaataa gttatgctgt ggttgtaaaa tggaagaaat tttgttgtag
      661 caattatgtt cagcaagatg acaaaataaa tttccagtgc tatgcttgca gtaacctggg
      721 gaatttaaac ctcataattt ccattcattt cagataattt ggagtaattt ctatatgtaa
      781 taactttgta atgaaaaaca cagcagtact gaagtgattt cacttttttt ttcctatggt
      841 atacatggca caaaataaat aataaaaata atatttcctt tttgtatgtg ttcagtaatt
      901 ctttcagcaa aatcataaac taataccagg actaaatctc tgtccatgaa atgaaaaata
      961 aattgagtta aagaaagtga aaaagtat
//
LOCUS       KCLA01001168             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 18986upu ultra-conserved element locus uce-6620,
            sequence.
ACCESSION   KCLA01001168
VERSION     KCLA01001168.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="18986upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-6620"
BASE COUNT          142 a          153 c           98 g          144 t
ORIGIN      
        1 ctcctaaaaa tgccatttgc ctcttcctgc tggcaacacc aatttccctg gatttagcct
       61 tctgccatcc actcggtgct ttaaagccat ctgaacacac tcgcatcagt cgctcatcac
      121 cgcgcggcta cgtgtgaaca ctcctcagcc tgatggagcc attcctcaac ccagctccaa
      181 cgcctacagc ccgccacgcc ttctcttcct aatccgcagc cttccaccct gtgtggctct
      241 taccttggct tctactttta cagtttgaca ggaagacctc cttggctatt tgggaaatgg
      301 aaataaataa aagcaaagag aattttacag gtcctacttc agctaaacct ttcagggact
      361 tcaatgagaa gataatcttt ctgtgattat ggccaaaccc tcccgttgct tagcaacaca
      421 taattaagga atatgttttc agatccgctt tgcaagctgg ccattatcag atgaaattac
      481 tggagcaaca aatgtcatcc tcatgcaaat gagttggtcg taggcacacg gcaaaaa
//
LOCUS       KCLA01001169             276 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19002upu ultra-conserved element locus uce-3968,
            sequence.
ACCESSION   KCLA01001169
VERSION     KCLA01001169.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 276)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 276)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19002upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>276
                     /note="ultra-conserved element locus uce-3968"
BASE COUNT           86 a           53 c           62 g           75 t
ORIGIN      
        1 caatgcaagg acatagctcc ttccagtgat ggccagttct gagcacttgt cctcaaagat
       61 actcacgtat ggagttcaaa gccaggcctg tctgactgtg aggcagcgga tggcagctta
      121 ccacagagtt gttggtaata aagtctattt gaagactctc agtgaaaagt gtgttcctaa
      181 taaaggataa catttcatgg tcattatgcg atacacttaa ctttaaaagg aacaaaaatg
      241 ctgagaaagt cattttctga aaagggctct cagatt
//
LOCUS       KCLA01001170            1099 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19018upu ultra-conserved element locus uce-7168,
            sequence.
ACCESSION   KCLA01001170
VERSION     KCLA01001170.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19018upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1099
                     /note="ultra-conserved element locus uce-7168"
BASE COUNT          279 a          269 c          276 g          275 t
ORIGIN      
        1 agacaactag atatgtcatg ttaatcacac aacactgggg ttcttttagg tcaagagaag
       61 cagagaaggt ctccgtggcc catgtatcct tcactttggc aagggctgga tcgctgagcc
      121 aggtacctcc caccaaaccc acatggcttg accaaactgc cagcctgaca ctttccaacg
      181 agcaactccc agcttgaaga caaagtcttc agcaacttct tccaggtggt ggggtgggag
      241 ggaagcgcag cagcatagcc ttgtccacca tgcacttcgt tgctccctcc ctttcagccc
      301 tgtcctttct caatacccag gaaagattaa ctcctctcca tgtgccagag aaagttatca
      361 ttaatgaaaa attaaaagga gtgattaata aagggtcctt atctggcagc gaggagaagg
      421 ccggacaatg ggagggagat ggagaaaatg caaaacaata aatacgaagc gtaagaggcg
      481 gcaagcactg ctcccacttg ttagatcgca gctgcatctc ctgagggggg aaggctccaa
      541 attgctaatt actgcctctg aaaagacctc gctctgatat gttttctgct gaaaggttcc
      601 cattaatgaa gcagcgatga tgccatttcc ctttgacttg ccttcaattc cctccctgag
      661 cttcctccca agctgggaac aatgaggctc tgggagctgg cagctccctt aggcttctca
      721 gagcctgggc ctggggcagc cgagtgaggg gagccgagct ggctgtgaaa tatggagggg
      781 ggagataagg caaagacaga ggaaagaggc tcactcccag gagcccaggg aaaatttgca
      841 gttattatga aggagatgag acagattaaa agcccttgtg ttctgcgctg cccttttatt
      901 tagtggcttc atctccaaga tgaaagaagt tggaaatgac tttctccgca ttttgctgca
      961 agaagcttca cggcacattt tttgactttg ttcctccctt tgtctcttgt accctttctg
     1021 tctctctctt tttcctttta acccctggca ggtttcaccg agaagcgctg tgggactagg
     1081 cagagcattt gctggggta
//
LOCUS       KCLA01001171             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19033upu ultra-conserved element locus uce-919,
            sequence.
ACCESSION   KCLA01001171
VERSION     KCLA01001171.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-919"
BASE COUNT          205 a          166 c          177 g          258 t
ORIGIN      
        1 tctgctgcta atctttagtg tgcgtttatt tttacatgct ttttagtttt tacaatcttc
       61 tgtgttcccc agcacgtgca gccaagtgca caggagtttg tcaggctggg gctcctgctt
      121 gcacggcaga actttttcat gccatgtaag tttttaagta aaaaactgca agaggcagaa
      181 aatcacttgg attcagacag cagaaaggga aatcccacct aaacaatagg tatttaagta
      241 gaaagtgttc cagctccttc tgacaaagag cctccagagg attataatgc agtcaatgtt
      301 gttttaatta aatttaatgc tgtgtgaaat gcactctgag aaactttgat gaatgactgg
      361 ggcaattcac gtggctcact aaagggcatc cagcccttgc aggggtgtca agccacgatg
      421 aattggttag tacaggcatg tttatagact gcttaaagaa ccttgtatct gtgtggtaat
      481 gtcagagata atgttatgat tctctggacc ttggggggct ttggtgacat ggttaatgag
      541 atagcccagg gagtgtccca gtaggttact tgcagacctc ccacatcaaa aggagcagct
      601 ttgccccttc agatcccata gtcctctaga tctctcagct ggcccaggct ttccatagtg
      661 ctactttttt ttctaccgcc tcccccttct tttttggttc ttagtcaaca ttagctttgg
      721 ctgctgaaat tcaaaagttg ttagtgttca atttggtttc tctttgactt gtctacacaa
      781 tggctttcaa agattttata ggaaca
//
LOCUS       KCLA01001172             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19049upu ultra-conserved element locus uce-4954,
            sequence.
ACCESSION   KCLA01001172
VERSION     KCLA01001172.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-4954"
BASE COUNT          131 a          129 c          137 g          124 t
ORIGIN      
        1 ctgaacacga gctcaggcct gaagacccac tgacaatcac tccgcaatag ctcgtgtcta
       61 ggcaaggtct tccccacgca gggaaccttc tctaaatatt agttactaga atcacaccag
      121 caatccgtgc agttaataat tatctcaacg tgccaaaacc gcacagtttg ctccctgatt
      181 acagtcctga attgctatcg agcggtggtg tttgctgcag gcgatactgc tgagcagcct
      241 ctgaagactc ggcttggcct ccctgcgcca gcgtggggag cgtgtgcctg cgcagaaagc
      301 acaggcggct ctgggctttg ccagaaaaca atcaagactc agacaatgga gcggaagttt
      361 tatcagagct ctcgtgtcct ttcgcttggg atctgtcatc tcgtgaaaag aagacattag
      421 agctttcgtg gcagagcatc agcaggagcc aggtgattcg agctgttcgt agagggcttt
      481 ttagtctcga gaggagaaga ctgaaagggg ttctaattaa t
//
LOCUS       KCLA01001173            1088 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19078upu ultra-conserved element locus uce-6047,
            sequence.
ACCESSION   KCLA01001173
VERSION     KCLA01001173.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19078upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1088
                     /note="ultra-conserved element locus uce-6047"
BASE COUNT          334 a          206 c          196 g          352 t
ORIGIN      
        1 gctgatgtta taataatggc tgccttctaa tattctgaca cattattaaa aggcaagtaa
       61 aaaaatgccg aacagtccca aagcattcac tttcccaatc acagttccct cagtgagtgt
      121 gtagatggat tttgatcaat agaagtgaat gagaagctga ccatcattgg ttaaaaaaca
      181 aaatgcacct cttcatagac acttctgttt agtataaata tttactgaga gttaaagact
      241 atttacatta acatacatgt gtaaaagtgt ggctgtgagt aaaaaacaaa tacatgcctt
      301 agtataattt taattctgtt ttattatttc tgttaaatgt agcttagcca ttaaaggccc
      361 ttatttgcat atattatgtc aggattcaca aagagtcctc tgttttctgt cgtgtccttg
      421 cagcagcctg ctttctctta gttctgccgt cactggtctg tgcaggagag atcagagccc
      481 taataataga tttttgacag ggagctcgcc tgctacctgc cctacacaaa tcctcactgt
      541 tcatgtttgc ttcatggcaa caaagcagac agaaggaaaa tgccaagtgc tgagtttgag
      601 gtacagccct gccatagctt gacatttcag cagaatagca gtttatgaga tgcataattt
      661 ttcatctggg actcagctgc cattttcata gaagcttgca gctcatcgac tgactgcaag
      721 tagggcaaag gtttacagca tagatcaagg tctacatcct tcccatagct atttaaaaat
      781 aagtattatt ttccagataa ggtcagagaa ctaagcatat tttttccact tttttagcca
      841 atttctttcc cacaaaggaa atgctttgga cttttagcac aggtgccatt tctatttgat
      901 atgaaatgat cattgtggat ttaattcacc aaaagattaa atgagtcctg gaaaaggttt
      961 acacacagca ttcaaacaaa gctgttttct cctgctctta ctttgaaaaa agctcattcc
     1021 aagcttgaaa tgaatgaaaa atctttactc tcaatacaga attggtttgt gttttattat
     1081 tgttgtgg
//
LOCUS       KCLA01001174             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19094upu ultra-conserved element locus uce-5402,
            sequence.
ACCESSION   KCLA01001174
VERSION     KCLA01001174.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19094upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-5402"
BASE COUNT          211 a          117 c          108 g          190 t
ORIGIN      
        1 ttgttcatga catggcatga acaaattacc aaaatgtgtt gtctcctcag gtgtcagttt
       61 ttctctcttg cagtgactga tggttcccag tgttattaca gaaacagatt gatcttttta
      121 atgagctagt ttaatagact ccaaaatctc accgtggctg ctcatccgtg tcagaccata
      181 tgtaccaaga aaacattgag taaaacacga agctctgctg tcagattgct ctataaaacc
      241 tcacatgcag tagacttgga tatgcacata aataaccaga attggaaaag gcacgtgcaa
      301 aaaaagttct gaaattaaaa gtaggaaaaa ttatgtagat tttcttcaac agaaggtaca
      361 aggtggacac gactatgtgc aaaacacaat ccacttcatt tgcaaatctc ttactgtttt
      421 ttacctcccc tggaatcagt gtctaaaaga gaaatgtata tgtgaaagaa tgtgtatatg
      481 tatttctaat atataaatgt atgtatcatc tgtgcgcaca tctgccttct catggctctt
      541 tagcatacat attatattca atgcctatat acgtaacatt ccttaagaag tgaaaagata
      601 ccacaatata ctttagcgag aaacag
//
LOCUS       KCLA01001175             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19109upu ultra-conserved element locus uce-4278,
            sequence.
ACCESSION   KCLA01001175
VERSION     KCLA01001175.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19109upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-4278"
BASE COUNT          115 a          121 c          130 g          116 t
ORIGIN      
        1 gcagcagcag agctctcccc ttccaaaagc aggatcacac ccctacaggt gaccagacca
       61 agcctgacgg gcacaaaacg gggtttcagg gcttggcagc tgggcttctc ccaccacagg
      121 ctgtccccag cgagagccga cggttggctg aggcaagaga gcagagtgcg gtgaagacga
      181 cggcgagctg cgtgtaattt atactctcct gcctgtgctt tatggctttc ttaattcggc
      241 tcctgctact attaatgtag ttaatgttga gattatatct attttctggc gtcaggcagt
      301 gatttatcgc ggccattttt ccggagccgg ctcccacgct gttaaatcaa gccacttgcc
      361 aattaagtgc tgactgggga agtggatgca atcttaacag atatctaaca gcaaattaaa
      421 gcgggtggtt ctttgtgcgt gaggccaacc tgctaacctc gctgagctga ggaaagcgga
      481 aa
//
LOCUS       KCLA01001176            1061 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19138upu ultra-conserved element locus uce-7553,
            sequence.
ACCESSION   KCLA01001176
VERSION     KCLA01001176.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1061
                     /note="ultra-conserved element locus uce-7553"
BASE COUNT          322 a          201 c          228 g          310 t
ORIGIN      
        1 gctcagaaaa cattgctcat tattactgat gcatggaagc atgcaagcag gtagccagta
       61 attatactgg gaagaattta ctctgttgca cagcttccta cttgaacatt tgtgaatttg
      121 ctttattttt agtctttaaa aagcaaacca cattgaagtg atttaaatca ttctcatatg
      181 acacaacaga aacataaagg cacgttaccc aaaagaaatg gtcagcagta agagctgttt
      241 agcaaagttg gcttgcaaca accagtatgc tatgtggaga aaacagttat cctttaataa
      301 taagactaat gaattcagaa atccattgat tgggctggct ctgggtagat tatgtgtagg
      361 cttccttcaa ggaaaggaat ttatgaaatg tttgctgcat ccagcaagca cggcagctat
      421 aatacagctg cctcctcagt ggtttgcttt gatcctgtgg aatgaaagga caggaggatc
      481 agctcaggtc taaatgagat tacagctggt tcggcagctt atctggtcta atgccaacta
      541 gtgtggcttt gcacgtccta aggggtttac aacagaaact gtttattgag tatcataggt
      601 ttactcaaca caagcaggct aatccttccc agcctcagcg tgttgtagga ttgtgcgtga
      661 gccaaaccaa aagctggggt agccagggcc tccagagccc tttgtctcgc ttcatattga
      721 tttttttttt acctgtttta aagacagtaa aaaataaaac caataaccag ccctattgtg
      781 aacaaaaggt taatctgacc taaaaatctt acaaaagcat cttttaaccc tggaagggag
      841 gggagccttt ctttgacttt cactcaaggg attttctagt ttaaggtttt gatgaggaaa
      901 ataggaaaac cagcttacac ttttaactcc atgtggtttg caggatccat gaattgtttc
      961 accagctgca cagaaaactt taaagtcatt tctggtagtt taagcaacgt accatctatc
     1021 tgtggtaggt gatgctggta gcaaggacgt gtcatgcgaa a
//
LOCUS       KCLA01001177             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19154upu ultra-conserved element locus uce-3964,
            sequence.
ACCESSION   KCLA01001177
VERSION     KCLA01001177.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19154upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-3964"
BASE COUNT          229 a          172 c          141 g          195 t
ORIGIN      
        1 taaaggaaac ttcaaaaagt tgaaactaag aaacttatca aaaaggtgga gacttttatc
       61 tcttgtcaaa ccctagcgaa gcataagtct ccagctacca gggcaaaaaa gattaattaa
      121 catcattcag ggatgtggaa tgcccagatt ccaccggtca tggccacaac agaaaggaac
      181 gttattttca aggcagcctg gaccacagag caactcacgc aaacacagaa acaaagattg
      241 gtgcctacct caaaatcatt tgctttattg tagtgcatgt tcagggccct gtacagctca
      301 cagtctctgg ttatagacag ctcctcagtg ctcgtgaccc cgtcgttgat ggcttgccgc
      361 gcatacttct ccatctgaat gtagtaaaac tcacggaaat tgctaaacca cttgatgagc
      421 tgagaggtaa tgcatctgtt gaactgttaa atttaaacag taagaaggat aagagcactg
      481 acattcttcc cccccagccc catttctttt aaaaagcatt cttttctccc cttccccacc
      541 accttttaaa cccatgtttc tgtgtttcta ctgcggggtg tagggggaag cagctggcaa
      601 attacgcaac tgtatcagat gaggggaaaa tgtatacagc accaaaattc caggacaaat
      661 cactgaagga taatgatact gcatccaacc attttccaaa tctttaaact agtctagatt
      721 ttttaactgt tgcactt
//
LOCUS       KCLA01001178             481 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19168upu ultra-conserved element locus uce-3681,
            sequence.
ACCESSION   KCLA01001178
VERSION     KCLA01001178.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 481)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..481
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19168upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>481
                     /note="ultra-conserved element locus uce-3681"
BASE COUNT          133 a          117 c           78 g          153 t
ORIGIN      
        1 aacagttcct cttcctctct ttttctttcc tcttttagac acgtgctttc ccccctcctg
       61 cctcccccta ctttggggat aatttaacat gttacacact aactttccag taatggcact
      121 ccggcttttt gaaattctgc ttccctcttt tatggctggg cctctaatgg ttatctcgca
      181 gctctgcctc tggcaatcat gtaaggaata aatagaagct gacacagtaa tttacttaaa
      241 tcttctccac acttttgcag cattttcctc cagaggatac ccccgaaaca acaattattt
      301 gaaatgtcac gcgttcctgc ccctaggcta ccgacaaatg aacattaaat ctattaacaa
      361 caaaaaaaat taaatgttta cttttctgcg aaggtaaagg agaagctgga gagagggagg
      421 gatgtctcca ataaatttct tctcaataat aaagaggtgt agttaatgtt ctctctaagc
      481 a
//
LOCUS       KCLA01001179             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19183upu ultra-conserved element locus uce-6017,
            sequence.
ACCESSION   KCLA01001179
VERSION     KCLA01001179.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19183upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-6017"
BASE COUNT          214 a          143 c          133 g          222 t
ORIGIN      
        1 aaaaatgtac accaaaaacc ccgggtgtgt cataggtgtc aacatgattt aaaaggaata
       61 tggcagggtg cagaagtgac actgaaaagg caaaggtcac tggggtataa aaatgctatg
      121 gtatatgaag tgagctattt gttttcacat attagtggca ctgaaatgca caagaaagtg
      181 gcggaaatta tattacagtg tacaaagtaa taataactgt gcctgaatgt cttaataccc
      241 tcttgtccca gcagtcctga ctttctaggc agcccacttc tccacattaa cagtactcat
      301 ttgcagagca gcaaacgtgc cattagaagc acttttacaa gtgtatattc atccaccaat
      361 tagcttaatg tggctgcttt ctgcatattt tctatccagg cttgcacaaa tcttattaat
      421 atttccccct agcgctttga cagattacct tgtcattatg catcctggag ccttttaaac
      481 aatatgggta aactactgtt tgcgaggtta atgacaatta tcccctaatt actgcataag
      541 tcactcagtc cactttatct cataggcagg gttctgctct gtgtatctgc cattgtgtca
      601 ctgtaaatga atcttgtata gctatgttta tctgtcgttg ccttgtaaat tactctgaca
      661 gaagaatgaa caaattactg tgtgtcatca cttaaataca gcttctgata aa
//
LOCUS       KCLA01001180             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19199upu ultra-conserved element locus uce-1322,
            sequence.
ACCESSION   KCLA01001180
VERSION     KCLA01001180.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-1322"
BASE COUNT          251 a          218 c          177 g          334 t
ORIGIN      
        1 agtggtttat agcaagtcag cacccatgtc acccctatct acccacagtt ttgacagttt
       61 ctctgagtgt tttttgttga gagaggatgc catcacattg gcttttgctc taagacagta
      121 gcatggccaa ctctgcagaa gtactccatg attttgattt cccctcttat tgccattcat
      181 gcttcaccat caacttcctg acccatctgt cttcaactgg cctgcatgta tctagcttag
      241 taccccacca gcaaccatcc tgctcagtca gataagatat ctgaacgaca gatgaaaagt
      301 agccagcaca gacaaacctc agtcagaaaa agttgtgtgt ctttcatgag gatgctgttt
      361 tgcatgttgc tgtatttttt aattattgta atgaggtgtg attgtctatt ggttacccac
      421 aatacttctt ggggactctc ccccggtaac tcttgtcaac acttgttaat ctgacaaaag
      481 gctacaaatt aagctctgtt aatttaatgt tttctcaccg agatctaaat accgaaagag
      541 gcccaaagcg caactgaagt cctttgattc actgtacttt attttggtat aaatttacat
      601 tcattattgt tttcctttgg atgtgtagcc ctcaattagt gtgatggctc cattaaagca
      661 agcgagactt cgcctttaat tattacaaca aaacacctag tttcagcttg gggagagggt
      721 ctctattgac ataagcagag gttataaaat ttaattagcc attcctatca gatttatggc
      781 attcaaattg ttctgtgttt ctttcctttg atccttgctg tacaatcccc aagatttttg
      841 ttctgatcaa atgagaataa agcttactgt gcagagagaa gttttttgtt gttttttctt
      901 tctctcattc tctttccctt ctttttttgc caggcaaggt cagccagtgt acccaatcac
      961 aacagggggt ttccgccacc
//
LOCUS       KCLA01001181            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19215upu ultra-conserved element locus uce-1005,
            sequence.
ACCESSION   KCLA01001181
VERSION     KCLA01001181.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19215upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-1005"
BASE COUNT          394 a          232 c          208 g          340 t
ORIGIN      
        1 tggttattag aagtgtgtgc aaacaaatgg attcaaagaa aaacaaataa aaaattcatt
       61 ttaaaagaaa tcttgaaaaa aatcaacaca agaaggagca gatgaatact ccagaaatgc
      121 aaataacaca aggcaggaat tgtctttatg tgcagggttt tttaatgtgt gtgtttacta
      181 gatttcaaga cagaggacat atcacttgaa aacagattta agcaaatgtc atgtacaata
      241 aatatttatt gttagaatta tttgtggttt caatgaggtc ttcattacaa acaaaaggga
      301 aaaaatcaag ctattttcat gtttatacag caagcatatc ttttgctaaa ctgcattttg
      361 agctacattt tttttccaaa tcaattcaat aagtgaaagc ccaacagaga acagatgcag
      421 tataagagca ataaaaggaa gtaaaaaaaa ttaaaaatcc tttgttctcc ctacagtaca
      481 tccgtaaatc tattagtgtt attttccttt cgtctctttt ttgcatccca agccagatct
      541 caagttctct gaagcaattc ttaatcaagc tccccgaagg cctacgactg catgcagcaa
      601 tttctcccct gctctcagca cagatgtttc gagcacattc cattacacct acatgccatt
      661 acagctaatg gcttattctg atgaagaaag ctgctttctg ctcagtgcag caaaggggaa
      721 aatagcctcc tgtacagttc gtacactgca acaatgaaat gtgggggcag gtggtacaac
      781 agaactctct aatgttaatt acatactgta ttacccccaa atttggctgg tcattaatta
      841 tgctaattta ccttcttgaa aattagcacc attcatgtgc acatttgagc agtttttagc
      901 aaaatgaact atggcatagc agtttgtaaa cttaaacctt ttgaaccact caaatatggg
      961 tttacagcag ctgcaagatg tgaaggggga ccatgctgtc agactagaga ctccacctca
     1021 tcgctcagtg ctctgtgcct cagtttccgc ctgtggaaaa ttatacctgt ctcacaggcc
     1081 aaatctccct gtgtttgaag agcagcaaaa agacaatgac tctttttgcc acagaacatg
     1141 acacacctga ttactgggaa cactggaaat caga
//
LOCUS       KCLA01001182             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19231upu ultra-conserved element locus uce-5251,
            sequence.
ACCESSION   KCLA01001182
VERSION     KCLA01001182.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19231upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-5251"
BASE COUNT          270 a          205 c          287 g          227 t
ORIGIN      
        1 gcagggcatc tgatgctggt ggcaatgcca agagcagaag agcccatctc caggcagggg
       61 ttaacagcat gaaggggagg ggaaggactg ctggggtaaa ttaaagaggg tggtgttagt
      121 ggtgcaacag gatcgatgat gcatagtact aacatatgtt cccccacctg cttttgaagg
      181 ttttgatttc ggaaggacta atgcagtttg ctcaagatcc aaagttcatt gaggtcacaa
      241 cccaggagct cgcagatgcc tgtgacatga cgatagaaga gatggaaaat gcagcagaca
      301 acattctcaa tggtaacagc aagcagagcc ccaatggcaa cctcttgcct tttgttaact
      361 gcagggaccc agggcaggac agtgcaggag aggaagagga agaggtgcag aatccggatt
      421 gtagaaaaag tcaggaggag ctcaaggaca gcaggattta tatcagcagc ctgtagttgc
      481 cagggctgga agcgatgctg gttttttatt tgtttcaatg ttcctaatgg gtttgtttca
      541 gaagtgcctc actgttctcg tgacctggag taaccggaac agcgttcttc attcatttct
      601 gttgggacga gtcgcagagt tgggtggtgt aagaaagctt ttcaggagtg gatataaccc
      661 cagcatgtgt ccatgaagga agagtgagga ggaggaggag agccagctcc ctcttttttt
      721 cagtccctgc acaaggaacg actgctgcct cccaagcacc aaggggaacc tcagctttct
      781 gtggatggcc ctagccaaaa ggaccctgca tcaaacgggt gtctgtcaac tttgcttgta
      841 aaaatcattt tgcacatatt ctgtatgagc ctcactgtct ccataaagcc aaggcccttt
      901 gaatcagaag gagaggagga cttctgctgt ggattcccat accgtgaagg ggaggaggaa
      961 gcagaagcca aagggcaggt gacagcact
//
LOCUS       KCLA01001183             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19246upu ultra-conserved element locus uce-2687,
            sequence.
ACCESSION   KCLA01001183
VERSION     KCLA01001183.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19246upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-2687"
BASE COUNT          222 a          124 c          148 g          177 t
ORIGIN      
        1 ttctcacatc aggagctaga ggagtatgat tataggtaag catgccgaaa agctgatttt
       61 cttttatgtt catcttaatc aaattaagtt tcagtttaaa agacaaccta caacatgcta
      121 agaaaagctg cgtaaagcat ctgtcagaga atgggaagca ctgctgcagg aaggttttgc
      181 ccgcttaaga agttctgcgc cattcgctgc ctgtgcagac agcaccaatg gttatgcaca
      241 gcagaagctg caagtcaaaa gctctggggt gaacatgttt atagaatttt ggaggcagct
      301 gcacaagcca aatataaagg taaagggtag gtaccaagag agtcatgttt ctcaaacaca
      361 gacgcctgtc agccttgtcc tgtggagagg ggttaaagct tttaaatgaa ttggtgtgat
      421 tagtgcaact taaaaagaaa aaaaggagaa aataaaatga atgtaaataa aaccaaaacc
      481 attatatttc tctataattg gataaaaggt taagattgtt ctacctctag ttccctcaga
      541 attcctgact ggccacaggt ctctaaatcc tccagagcct gagaccagaa attttcctcc
      601 tggtcagcct cggtgttatc atgggtacct gcgaagctag atttacaatg agaagttaaa
      661 aaaatgtgga c
//
LOCUS       KCLA01001184             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19262upu ultra-conserved element locus uce-6222,
            sequence.
ACCESSION   KCLA01001184
VERSION     KCLA01001184.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-6222"
BASE COUNT          288 a          178 c          152 g          251 t
ORIGIN      
        1 taaattagaa caaaaccagc agataatctt caactaaaca ataatagtag agtcaattct
       61 ctcggaagaa caggattatg agtagaaatt gctcagaatc gctaaatcaa aaagtcattt
      121 aacaaaacaa acttaatata atcatatcag ccatgcaaac aggaacatca ttcttgaact
      181 gcattttaaa ttcaaatgaa attactacag cgctgcagca cttgcgtgaa acagattctt
      241 ggcgctagtt ccagtctgaa attatctaat tttgaccagt gtttgtgaca ttacagcaac
      301 aatgtgatga aagcaggact ggctctgttt gcttctaatt gacacctgca gttgctggga
      361 gacaatggca tgtgctccta atggagagta gctttcaatc agttcagcaa tcagaaaata
      421 atcatagtcc tcatacttac acacaaagca cttacttaat gttttccaac ctgctagagt
      481 ctggtttcaa agtgtttgaa tgcttcacca ttttgcacaa tgtgatcacc aggaagataa
      541 gattcagctg tcaaaacagg taagaatgaa attaaactat gtcaagtatt aggctgaata
      601 atgatacaga ccaaacaaaa atcgtagttt attttcaagt gtatagtgga actatcatac
      661 agacttcaaa aggtgattgc aaatatggac gggggaaaga aagattcttg tttcacatcg
      721 ttttccaaaa tcaccacatc atcacgaaat accatcttca gctcttgtcc agtactggtc
      781 attgtcagag gagctcagtc ttccagcatg ttgctcttgg cttttgttca ccatcatctc
      841 tcatctctgg ccctgttccc tgtcccacc
//
LOCUS       KCLA01001185            1022 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19277upu ultra-conserved element locus uce-2647,
            sequence.
ACCESSION   KCLA01001185
VERSION     KCLA01001185.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19277upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1022
                     /note="ultra-conserved element locus uce-2647"
BASE COUNT          276 a          247 c          212 g          287 t
ORIGIN      
        1 taggaatcta tgaatcacag aacctattaa tgcagtacct atagtccaaa gcccaagagg
       61 ttaagagaag cctggaagct ttctgagcta aacccaagct ctgaaccttt tgacttttgt
      121 ctgtcattgc tggaaatgca aaccagacct ccaatccttc agaaacaacc tggagatgca
      181 agaaacattc ttctccctgc tttgcacccc ttccaacaaa gccagcgggc tgtatcagat
      241 atagattgag gatgaagtta taattgcaat caatgccttt gccatgcccg ctttgcccaa
      301 taatacatat ttcaggcagt gcactgtggg gatttatctc tgcaaggtct gtttctgccc
      361 aaatcagtgt gtctttccct ttgatattcc cacagtgttc acatataccc tcaaacatac
      421 acagccctgg gtaatatgtc tccaatgcga tgaaatcaat gggaacacag ccttttttgc
      481 ctgacagtat tgtcagggtg tattatctgg tttaggctgt ggcttcagtt catagcagtc
      541 gtcagttaaa tttccctttc tgaagctgag caaagtgtgg taatgtcaca gccacaggcg
      601 actgccgctc acaggacggt ttaccggtgg agcttagcct cctggcttgt cacagtgtat
      661 atatctcagg gtcttctttt ccttcctact cagaggtttc caagaatgtt gcctggagca
      721 gtcatgggat gcaaaaaaag agagattttt gttctgcact tagcaacatt accacacttc
      781 acactcagtt tctgataagg ggaaatttaa ctgactgctc tgaactagat ctaccagata
      841 atacactctg acagtgctgt ggataaaggc tggcaaacct actaatttat atttcattat
      901 ctctgcactt ggcttaatcc gttagctctt cctaaatgct cacaaagagg gatgcgctag
      961 gcagcggaga ggggaaccac aaacacctct tgaactcaaa ccccctcttg ccagggggga
     1021 cc
//
LOCUS       KCLA01001186             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19293upu ultra-conserved element locus uce-971,
            sequence.
ACCESSION   KCLA01001186
VERSION     KCLA01001186.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19293upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-971"
BASE COUNT          255 a          175 c          213 g          283 t
ORIGIN      
        1 ccaacacact cctgaagtca aaaccgtcgt gcagagcccc tgcatccgct acgagcaaga
       61 gagttgatcc tgcactaaga gcttccttta attccctgtg gacttttgat tgaacgatgg
      121 atgcaggatg gagtccagag ggaatgcaaa ctaccaggaa attattccca tccatgattt
      181 tgatccctcc atttcagaat tgaaaacgcc acgcaaaaaa tagcaccgtg tttgcagcag
      241 attctgctga ttgcagggca ttatggaagc atgtcggggt tttcttttct cttttttccc
      301 cctcctttta ccagacagag taggtgaaga ggttgagctg cagatctcat ttctcctgtt
      361 ttgctgcttg tgaagtctgc caacagaatc caccttgaca aagtcaagga ctctgcgttt
      421 aatgttgaac tgagtgaata aattatgcat gaaattgtgt cggagtctct agtgtgcaga
      481 attgctcctt ttgatatgaa aggttaattc agaaaggagt ccaaaatagc tggaaattgt
      541 ggggataagt ggatagtatt cactgttgtg agctgttatt actagaaatt gcattccctc
      601 tctagcttcc ctagagattt agctttgccg gtgaatataa actgtactca atagaatagc
      661 atttaggagt aacaagagtg tatgtccaca cacagtaaaa tattctaatg gtgttttaaa
      721 agggagctgt actttttcat gtgttctggc taccctaagg atggattgct attacattta
      781 ggtcaagaac aaggcatagg gggggcagta agtttggagt acgtctttat tacagatacg
      841 ctgcttctat gatctggatc aaaggaactg gacagtcatc tttttctgat tgagtttgtg
      901 ctttacagga gagttttgat caggaa
//
LOCUS       KCLA01001187             304 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19309upu ultra-conserved element locus uce-7018,
            sequence.
ACCESSION   KCLA01001187
VERSION     KCLA01001187.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 304)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 304)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..304
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19309upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>304
                     /note="ultra-conserved element locus uce-7018"
BASE COUNT          100 a           61 c           62 g           81 t
ORIGIN      
        1 ggagccaggg cccaattatg gttctattaa acttttgaca ggtttactta gtaacagtct
       61 cagcactttt attgagcatg caagactaac aaaactttgg caatgcataa gtgtaacaca
      121 gtgacaagaa gagacaatta aatcttctaa tactggcttc acagtgtgga aattgtgcta
      181 catccaccaa gagagggccc agtctactca aatatttaag tacttcaccc cagggacaaa
      241 ctcctttgcg tttggattca ggttactctt gacctgagga aggaaaaaaa caaagtctgg
      301 atga
//
LOCUS       KCLA01001188             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19325upu ultra-conserved element locus uce-872,
            sequence.
ACCESSION   KCLA01001188
VERSION     KCLA01001188.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19325upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-872"
BASE COUNT          221 a          117 c          115 g          181 t
ORIGIN      
        1 ttttcaactc tgtaaaccac ttttgggtta ttaaccccat gtctctacaa gaaagtgaaa
       61 tcaccaacta gttttaagag cacttggtaa ggtatatggt accttcaact tggcaagttg
      121 gcccaaagct ttatattaaa aatcagcatc agctgtagtc cactcaactg gtcctcagtt
      181 caacctggga attacagaac agtactgcct caccattaac tcaccttcca gaatggttgg
      241 gtagggtact gggaggtaaa tatgagaaat acaattggaa ttatgataaa cagaaataaa
      301 aaggggctaa aatcagaaag gttttgtgaa aagaaaaacg gcttgcaata aagctgaaaa
      361 cagcagtgct ccgaggcaat ttagactgca aaacacaaac cattaagttt gtgcattatc
      421 ttttaattta atcttgaatg atttataatc catcacgcaa ggcttcaacc atatccaatt
      481 attctctgct gcttgattga caagaaaggt gatttattaa gctaataaaa agtgatgtga
      541 gctgagctca tataaaaaat aaccagctgg acaaagactt taaagagaca tcgacctttt
      601 ttttcccata gagaaggttt tgtcactttt acca
//
LOCUS       KCLA01001189             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19341upu ultra-conserved element locus uce-5721,
            sequence.
ACCESSION   KCLA01001189
VERSION     KCLA01001189.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19341upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-5721"
BASE COUNT          137 a           92 c          132 g          132 t
ORIGIN      
        1 ggggcagttg tggcctgcta tacgcaggta acatcaagtg aaactgtctt acaggcagct
       61 gtcaagatca gctctgttgt cccttatgtt ttactgcttt tttgtgtttg taggtgttcc
      121 aatgcctttg gcttgcagtt ctgtaggaca caaccaaaac ttatttgcaa attgaattaa
      181 aaaggaaaaa gggccaaaag ggaaggaagg ggactccaaa aggctgtaaa attgtgcagc
      241 gtgagccctg tgatgcatgc tgttttcaat ctgctgcgtg ccagttggag gctcggagag
      301 cgagcgagag aaagcgaagg gataatgctg agaaatgata gagtggctgt gacctccaag
      361 ctcagcctgg aaatccaaga cactgatttc acttagcatt cctgctgaga aatccggcgg
      421 agttcagttg taataaaaga acaagattct gttctaatgg taatggcgta tgacagacgt
      481 atcactttgt ctg
//
LOCUS       KCLA01001190             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19356upu ultra-conserved element locus uce-691,
            sequence.
ACCESSION   KCLA01001190
VERSION     KCLA01001190.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19356upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-691"
BASE COUNT          318 a          150 c          148 g          278 t
ORIGIN      
        1 tgtaacctaa cagacaaagc aaagtcgtca ggaacactga acactctgca gtatttttaa
       61 tgctttaatt ataattaata agtgtggtta acaggtgttt gtgtaatggt gcagtggaca
      121 acataaagaa aagacagatt tttttatatc tgctttttat agtaattggg atataaacac
      181 ctaaaatcag gattttatac taaaagggca agctaacctt actaatggtg attactcatt
      241 gtataataga aaaggaaata caagcttttt tataaaatgt atcaaatcct aagagtgctg
      301 ttaaactcat taaagaaaaa atgaagttag agaagctggt cttatttttt ttcactccca
      361 gtagagttca tttctacttc aacaactaag ccaaggtcac atttaactca cttcaatttc
      421 acccagtgca caagctaatg tcaatagtac agctgccatg cagagctaaa gactgatggt
      481 tagacaaagc catttacaca aggctgggtc tttcatcttc tttcagctag tgacataaga
      541 aagcgctgag gttattctca actagagact aaaactggca tattagaaaa aatgttattc
      601 tccttagctg tcacacaaag gatctgaaga aatgtagaaa tgtttttttc cttggtcatc
      661 tagggagatc acaaagtgac tctaatagcc ttcactctga aattttcaca tggtttaagt
      721 gattgccaag tctgatattt tccatttaca cttcattgcc atcagaaaaa gaaaaaaatc
      781 aatataccta cctactcaag tgtgtcacag gatgagcttg taaaagaaga catcagtctt
      841 tttagggcat gaaaaatata cttattcaaa tatatcttat ttaaaatgac ataa
//
LOCUS       KCLA01001191             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19370upu ultra-conserved element locus uce-7768,
            sequence.
ACCESSION   KCLA01001191
VERSION     KCLA01001191.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19370upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-7768"
BASE COUNT          224 a          222 c          202 g          243 t
ORIGIN      
        1 tccccagccc tccgctggct ccctccccag tgttttaact gcttctgcag tagaagtttt
       61 aagtcacggc acgcaaagag agcgctagtt ttatccagga gttatggtcc gttaggtggt
      121 atgcctgact ttaaaccaac tttaacatca aatcattccc acgttagcta tttaatgtgt
      181 ttgtttatgg gtttggactg acctgtcaca aatctactta ggatcacttg ctagtgagat
      241 tatgtgtgtg aatgttgtgt ttgcccctac cattttccat atgctctgcc tcaccaacac
      301 tgccatccgg cgtagtcctt tcgtagttgt cctctgggag tggaagggca cccagtcttg
      361 gccctgatga actcttactg cttggtgttt ctgactcctc cagaccgctg tcatagcaac
      421 tctgcaatga cccttgatgc gggtcctgag gctgactcac aacagaaaac gtcactctac
      481 gaaacggctg caagagaaaa gattctgaat gtcactggca agttcagtct ttgagcaact
      541 gattctcaaa acacgactta agcaaactaa cacgttaaca tttaacaatt tcttgtctaa
      601 atcaaagcaa acagcaagta cagtctttca aaggccactg caaagaggag ctgggaaggt
      661 ttactcgtag tctggaacct tccggaaggc ttgaatcact gcgtttcaaa tcactgcatg
      721 agctaagaaa aatgtcttag catcatttag aaatgctcta ctcctcatca ggaagaagct
      781 gagtggaact cgtgtcgcac tgcgtcacgg actcgacggt gggcaacgtg cccgtgcagg
      841 tgggcatctg tagagcgtgg gtaccaccac cgtagcggca cccctggttt a
//
LOCUS       KCLA01001192             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19386upu ultra-conserved element locus uce-4010,
            sequence.
ACCESSION   KCLA01001192
VERSION     KCLA01001192.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19386upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-4010"
BASE COUNT          219 a           91 c          122 g          215 t
ORIGIN      
        1 ttttctgagg gaagtgctaa gttttcaaca agttttacca tgacagtgat gtgtaatcat
       61 aggagtgaaa tcaaatttta ttttaaataa actgttccat ttgtgagata aacttatatt
      121 ttattttttt taatgactag ttaaaaaggc ttgtgcagat atgcatctgt aagcaaactg
      181 ggaataggtt ggagaacata attccctggt gtaaaaagca aggtttagca gtaatgcttt
      241 taatctggac ttgtagagga ttcaggagta tccatagatc tgcttcagta attaccatac
      301 cccaagtggc actggaggag acatttgcct aaaaacttga tgtcttcatt acactgttta
      361 cattttaatt agaaacatga aaattagtga ttcatacaga caactatagt ttaagtgggt
      421 ttgctcacca tccaataaat catggcaggg tggggaggat gggtgtgtga agcaacccta
      481 caacatgcat caacaaacac tctcaaacca gatgcaataa atagtttatt agaaatcatt
      541 tctgggagta atatgttagt attagaaacc ggttaaaata caggttttat tttatttgag
      601 atgaaatttc catgaaaatt agctaattca attttatctt taaaatt
//
LOCUS       KCLA01001193             929 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19416upu ultra-conserved element locus uce-3085,
            sequence.
ACCESSION   KCLA01001193
VERSION     KCLA01001193.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>929
                     /note="ultra-conserved element locus uce-3085"
BASE COUNT          287 a          174 c          168 g          300 t
ORIGIN      
        1 gacatgccca tggtagtgta atgggaagat agagtaaagg atcatacctt ttacatttct
       61 tctacacctg gatatgtgga actcattata aaatccatgg cttcagatgc cacgtgagaa
      121 aaattaagcc ccctctggat aggctggaaa tctgcctcat cccatatacc gagcctgagt
      181 tatttacaaa cttgaggaag aaactatgaa tgggcacttc ctcttctccc ccagggccta
      241 tagcttctcc gctgtcgcaa gatgtagata agtttggcat tcaggttcac tgtttgaccc
      301 attaaactgg tattgaggta taatttgtgt gttttcccag tacggttgca catagaatgg
      361 ggttcatttc cacaagtttg aataaattta tccagttcag tgaacctgtt gttaagctta
      421 gcaaaactca gtaggtggct ttaaagtcct gtaattagcc cattacataa aatctgtact
      481 ttagattttt gcacattggt taataagtat aacgtgcttc gtatatataa ataacattac
      541 attaaacgat gccatataaa ggaattaaag gccaaagtag ttaaataaaa tacttgaagg
      601 agatctcaaa ttagcatgtt taattccaac ccattgaaca ggaaaaggct ttagccttac
      661 tgtactggtt ccatacaatg tgcagaatag cagatattta gtctccattt tacataaggt
      721 cgctgtcatc cctgacctct ctgtgacttt ggaaaaatgt tctaattagc ttgtttcttt
      781 taaaatctaa tcattacgat gtctaaatat agccgtgaat taccaagaca gcacttgcct
      841 caacaatttt tcatagtttg tacatagctc attaattctt gatccttaat ttttggtttc
      901 caaatgaaat atgtgaggaa aatgaagtc
//
LOCUS       KCLA01001194             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19431upu ultra-conserved element locus uce-2018,
            sequence.
ACCESSION   KCLA01001194
VERSION     KCLA01001194.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19431upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-2018"
BASE COUNT          176 a          169 c          125 g          215 t
ORIGIN      
        1 tttatctgag ccaacaccac agaacatctc cagcttcttg actcctcctg ttttccctct
       61 ccacacttct tttgaacttt ttttttttta tccccagccc tggattcaag cagccgcttt
      121 tcacattaat gcgaggattc ctaccgtgtg gtctttactt tatttttcca tttgcaggcg
      181 gttctgttcc cagccccgtg gcaggaattg ggcagtcagc aagagccggg gagtgctggc
      241 atgtatcatt acattctcaa gatggcatat ttactgctat tgccagcagg gtcgtgcttc
      301 tgtcctagta aatgtagtgg agtatgaaaa aggcaattac atctcactgg gtgacctttt
      361 aacagccatg actacctcct atctatacat aattattata ggtgatgatt tccaagtatt
      421 acaatctcct acagcctcct ttaattcaca tcacatttag gcacgtttgt cagcgggtta
      481 accccccgaa aactgaaaaa ataggagggg aaaagtgata gcaatggatg tcaagctctc
      541 aagtcatcct aataaaaaca cagcaaataa gatgtcgccc tgtttgtatt cattatcagt
      601 tcttacatgc tccgactctt gcattaaaca ttagacagcc tctgatgcct gcttaacagt
      661 ttaattccct cctcagtatt caggc
//
LOCUS       KCLA01001195             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19446upu ultra-conserved element locus uce-2699,
            sequence.
ACCESSION   KCLA01001195
VERSION     KCLA01001195.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19446upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-2699"
BASE COUNT          151 a           81 c           95 g          159 t
ORIGIN      
        1 aggcaatccc ttagcgtatt gcagtagcat gcagtacaga tgtaaggaaa gctaggtgtc
       61 actcagtaag gagtcctgtt ggtatgactg acacataaag ctgttttttg ccattctgat
      121 gtgttctttc ttgcagaggg atatcttgga gacaaaccat tggaataaac cctttttgtt
      181 gtcatttggt gagattttta ttttaatgaa agggttctgt tttgtgtgca aatactagcc
      241 tttgctattt gatatgcaca gaaattcaat cagatgctta attatgtctt aacatgagtt
      301 ccaaacagct ggctaattcc cttgtttctg attaaagaga ttacaaaaat aaaatttaac
      361 attgcattta catagagctc taaaaggaaa cactcaccca taagttttag tcatttagga
      421 aattcatgtc tgctcaacac tagggatcaa agcttcttac aggatgaatt gcaaagtgac
      481 aagaca
//
LOCUS       KCLA01001196             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19477upu ultra-conserved element locus uce-2860,
            sequence.
ACCESSION   KCLA01001196
VERSION     KCLA01001196.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-2860"
BASE COUNT          273 a          179 c          158 g          316 t
ORIGIN      
        1 gtgttcatgg ggttggaagg gccttcatgt ttcacagatt cacacaacaa attctgacaa
       61 gtgaaaaatg tttgatttta aaaagtcaca gagcctgcct tttttaaaca ctttcagtat
      121 ttatttaacc tagtaaatag ctttattagc aaggttccat tctttgtagt ttaggtaatg
      181 gatttaccat atgtttatgt tttaaggact tgtgtaagac tgctaacacc tatttctcca
      241 cctcctgtct caggggttaa gaccttggta tgttgccagt ttactgctgt ggtctcttcc
      301 ccttttataa ttgccatcat tcccagagtc aaggaaattc cctgagcttt tgctctaact
      361 agccacaatg ttttgctaca aaaaggtact tctttaaaag aagaaaagta ataaaacttt
      421 cacattatta actttttccc ttttaaaaga agttgaaaaa tgccattgta ccacattaaa
      481 gacctttaca taagactcac cattggctaa tgagccttgt tgtacaatct accacatgca
      541 actgccttca agtgctgctt ttaacttaac cttgatgtag tgccaggaat gtgctttgat
      601 ggtgggggcg gtccctcctc ccaccctccc cttcccttat tgatacactc caaagtatct
      661 gtaatatctg ggagggggtg ctgtttaaca gagtaactat tttatattcc ataaagaggg
      721 aataaatcat atctgtccta tagaaatata gaagctgatc agttatttat aataaaatta
      781 caggaagttt ttggtatttt atactttcac agggactttc ttcctgcaga tacaaagcac
      841 tttatgagca ttctcacaac tgctttgtga agaaaacatc ataatctgtt ttatgattaa
      901 taaaactggt tcagtgactt acagaa
//
LOCUS       KCLA01001197             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19493upu ultra-conserved element locus uce-1718,
            sequence.
ACCESSION   KCLA01001197
VERSION     KCLA01001197.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-1718"
BASE COUNT          292 a          159 c          170 g          239 t
ORIGIN      
        1 caattaatta tgaaggcctt tggggtaggt cgaagcaagg gaaaacctac tgctggccca
       61 gcactccagc cgctttctct gtgtttgtta aatggttgtg cctgttgggg aaccagagta
      121 gcagccacca aaatagccaa tagatcattt aggaaaaaag agcaaaagat ttttttatgt
      181 gtgtctgtcc ttgtataatt tcattctcac tgtgaaatca tccatacaca aaacacaagg
      241 acaatttttt ttttttagaa gaaccacagg gtaggttaca gtcagaaacg gcctctcagt
      301 ggtgtgttaa aaaggatggt cttttcacca aatcatttca cagaggcaaa acagacaaac
      361 acaaagagtt gagacttttt ctcctacatt aaatagagta actgataagg tcagacatat
      421 gatacctaaa gacatgaatc tgtgaactct tgaagtcaaa ggacttctct gtgcaaagga
      481 acaatctttc aaaggaaata gatcatagaa ctccactgaa tcccctttaa actttatgaa
      541 gcaggaggag aaaaagctct aagtagggaa gcttgacaga agagccttga actattttct
      601 gaaggaaaga tgagaccctc cctaggctgc cacaaaacat cttttttttt ctaaaggctc
      661 ttctgaactt tgatatgtgc caagacaccg ctattgaaag ctgtataatt atgtgctata
      721 gccactgtag aaaatgcttt gttcaccaca acaaagaaca ataagcaaag taaagtgaca
      781 ttacactgta tctttttctt taagaatgtt gagaaaggtc accgtacgtt ataactaata
      841 aagctgttga gtaaggaagt
//
LOCUS       KCLA01001198             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19509upu ultra-conserved element locus uce-7122,
            sequence.
ACCESSION   KCLA01001198
VERSION     KCLA01001198.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19509upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-7122"
BASE COUNT          184 a          180 c          163 g          210 t
ORIGIN      
        1 ccccgttcac agctggcacc gagcacctta tcccagcctc tcctcctttt cccgtgctgc
       61 agtgacgttc ccaggctgct cccacatctt catttttctt gaggcagagc agagccgagt
      121 atttcctaaa gagaagaaca cccgtcctgc tttgaggttt ccttcgcatt aagctacatt
      181 tcatattcat tccacatttt ttttctatta attaaaagta aaccgtgtat tgtatggtac
      241 attatccctc taacagcccc atgtggagat catgaagtgg aagactaatg gtgtagactt
      301 tagcatttag ttttaaccgg aataatttac atatctgtga gaggagtccg aggcgtgtgt
      361 aaataagcag aactctgaga tagcgagacc ctgccttggt ttgctgtggg ctgcagagcc
      421 acgggctgtg tgtttcttcc atcagtcagc taatttaatg agactttatc cagcatctct
      481 ttctgcagaa gacgctgaag ttattatcaa ggagaggcac gcggcagcaa gaaaaatggc
      541 tttgtttgct ttcttcttct tgcaccccca agtagcaaag gtgatcccat ccgctgctca
      601 ttaacgttta ccttgatcgt tcatcaaagg agccccgtct caacagcctg atgctgagat
      661 ttcaaaactc aaggctgatg gagacttcaa gcaaaaggcc acggatttgg ggggactgag
      721 agatcgcttg gcaccac
//
LOCUS       KCLA01001199             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19524upu ultra-conserved element locus uce-323,
            sequence.
ACCESSION   KCLA01001199
VERSION     KCLA01001199.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-323"
BASE COUNT          277 a          149 c          147 g          330 t
ORIGIN      
        1 ttctatgtaa atttgtaaaa tatttgggga ggatatatat tggtccatat gtattcagga
       61 atatacatat atttggtcat acatattttt ctgatttaag tttaaaaaaa agaactcaga
      121 agtagagatg tttgctcctc ctcagtttgc atcagccatt ccatatttta actttaaaaa
      181 attatattgt ggctttgctc aaaagacggt ttgatttttc taattaatat tttagatact
      241 ttagtgctaa gagcttcatt gccaaacagt tgaatactgc agatgtaggt gatgcactcc
      301 cacattatca aataaatgct caaggtacag ctgataatgt tgaaaaatag aaaaataaat
      361 tgaccttgat gaagtgtgtc ttcttttgtc tgttcccagg gaagtttatt tcaggtattt
      421 ctactgctga aatgattaga gttaacagct ttttccctcc attttatttt acagggtctc
      481 ttcatcttcc tgatatatgg ggtgtacaac acagaggtaa gtctgcttga agtatctcaa
      541 ggctgacaga gtgaatgaga gaaatgacag gtttcttatc ttgataactg agggacaaag
      601 ttagctttcc atacaagtgt cctactgccc ttcatgcttg gactacctta tatgcatcct
      661 agcttaccat taaacacaga caccctgaat aaatggacag actcatttct cataggcatt
      721 gactaatatt ttactgctgc tttagttttt taaattcctg ttctttcttt taacactagc
      781 taaacctgac agtccaaaac tttttttaat ttgcatttta aaattaactg tttgattacc
      841 agctatttaa tgacaattat ttacattata aaggtgactt caaaattttg tgtgtacatc
      901 ata
//
LOCUS       KCLA01001200             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19540upu ultra-conserved element locus uce-7978,
            sequence.
ACCESSION   KCLA01001200
VERSION     KCLA01001200.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-7978"
BASE COUNT          175 a          161 c          149 g          152 t
ORIGIN      
        1 caggtcacgc agagccctaa atgccccatc ttcaatacag ctgatctggt tgtaatccag
       61 ttgcctgtta aacagattag gaacgtatct gtaagggagc caagagctcc tgaagggccg
      121 gcagagccca gccacgctaa ctacgctcgc accgcctgtg cgcgcgaggc tgtacaccac
      181 gctggcctgg atgttgccac agaaatccct ttttgttctg aattgtctgc gcagagcagc
      241 agcgctggga aagctccagt aaataataac cgcaccttat attaaatgcc aaaggaatgc
      301 aatttcatta catcaagaaa agctatccat taaaagctct cagcgtcatc tcgctgaaac
      361 aatttcatta aggtaaagga cggtaaatca cttaatgtca cacgcatccc ctcggtgacc
      421 taacagaatc catttatcag agcagcccag ctgcatgtta attccactcg ccgcagcagg
      481 gaccggcaag agacaccact tttaggggtc tctctgcgtg tgtgcatgcc tggaccaggt
      541 gggaggtgct ggggcatgga ggattcagaa tacttatctt ctagaatatt actttgggta
      601 gcaataacag cgtccaaggt atttacatac ttggtta
//
LOCUS       KCLA01001201            1065 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19570upu ultra-conserved element locus uce-3069,
            sequence.
ACCESSION   KCLA01001201
VERSION     KCLA01001201.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19570upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1065
                     /note="ultra-conserved element locus uce-3069"
BASE COUNT          269 a          215 c          245 g          336 t
ORIGIN      
        1 attgtgatat tttagtttac tgttgctaat aatccctttg cgtctttcat tagcacatta
       61 tttataggat cacaaaaggg cattggcact acccagcctc taaggtggtg ctgccagtgt
      121 cctaaggact gaaatgcttt ttagaagtgt tggatcacat catgggctgg gcagtgggct
      181 cacctggccc tggcagaagg ctgtatgaag ctttgggctc aaatactgtg tctcaaaacc
      241 cactgaggcc agcttggact ttagatgctt gtacaaacaa gacgactttg cctcgtaact
      301 cctcccaagc ctgcacttga cgagctgctc aaagctggag ggctgtgttt cccataataa
      361 attcctttta gtgaacccac ttgttagtca ggcattgtgc acactaacta cagcgagggc
      421 cctgtgtctt gggcataaat tactctcgcg tggcactgtc tctgagcagc cccccagtta
      481 tggattactt tgttctcgac ttgacaggaa cataattaga actgttgatg aaatctacca
      541 aattgttcct ccgtggcctc aatggtcagg aaatttggct gagtcgtatt tgtcaccgac
      601 gtaaaggctc taaacacttc atattaacta tgttattaat gtgccctcta atctgtccgt
      661 gaattggtaa cacttggagt gagcctgtgc tctaatagca ccttgtgatg aattccttgt
      721 aatgctgtta aaaagtttct ggagggtggg gaaaaaaaaa ccaacaataa aaagtgaatg
      781 tttctaggtt gttttttttc tctgtatgtg cgtttttgtg ttgtacagtt ttgttttgct
      841 taatcggaga ttcattcagg ctttacattg acagaccgtt ttctgttcta taggatttgc
      901 tgacatttgg gctgtttcat tgccagagga gactttgtgt gtcccaaagg aagtgagtga
      961 tctggccata acaaatcctg ccaaaatatt ttaacaccgt tacgattttc taatgcaatg
     1021 cgtagtgaat gtgactagaa aaggatggtg agtccacgaa ggggg
//
LOCUS       KCLA01001202             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19586upu ultra-conserved element locus uce-4830,
            sequence.
ACCESSION   KCLA01001202
VERSION     KCLA01001202.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19586upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-4830"
BASE COUNT          261 a          131 c          126 g          232 t
ORIGIN      
        1 tgattttgca agggcaactg ttatcaaaaa aagcagtgaa ctctactact gtagagcaaa
       61 atctaacaac gtatttcatt gtaaaatgta agaactgctg caatcagtaa tgtccaattt
      121 ttttgcaatt ggaacaactt aaacatgaat atagggcata gaagcaaaca caatgctata
      181 gtgtttattt ctttcctagt aacgtaagga aaaacctttt aatagtttaa ttttgtgagt
      241 attaaacaac tagtgtgaaa aacaagctgc atgtaaacta tttctactgc ctctgcttca
      301 atgactagct gaggcaacct gttatatgag gtgttaattg gcaataggag tacaagtcag
      361 aagcatgttc cccatcgtcc taacccagca aggctaggtc attaaagtgg aaatgaattc
      421 tttcatgccg gcttaaccct ttcaatacat attttcagtt gttatatcta aatacaattg
      481 tgaaatatta actaaataga taaaaagcct tccactactt ttgaatttaa ataagtattc
      541 accctccaac ttaacacatc catttcctca tgtacctctt ccaaaacaag tgtttcagat
      601 aatcatgatt attatgtagg tggtgaggga gaaaggcaac tcggtttaaa ctcaatgaca
      661 gtcactgtaa aataatattt tgccatattc aagggtgtgt ggaaaaatca ggcactaaaa
      721 gttaaaactc ctgttttgtg gaagcaaatc
//
LOCUS       KCLA01001203            1043 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19602upu ultra-conserved element locus uce-6106,
            sequence.
ACCESSION   KCLA01001203
VERSION     KCLA01001203.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19602upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1043
                     /note="ultra-conserved element locus uce-6106"
BASE COUNT          336 a          215 c          187 g          305 t
ORIGIN      
        1 cataactaca tgcacacatg cacacacaca ccacccgcct gctctggaaa gaatatatta
       61 ctgcatttcc attttggaat aatggaggaa atgtgtaaat acagcactct attatttcaa
      121 gaaaagcttt caaaatgcac atactccact ccccctaaat tatggtggaa gatgggtcat
      181 aatagctgat gtaataggca agaagggaga atggagcaca attccctaaa ctcgataaaa
      241 taagcaatta ctcttgttat ctgaatgact ctgtcagtgg agaagttgtc tgtgtcataa
      301 cagaatctaa caaagcctgt tgcctttaag catcaaaggc tttggcctta ttatctttct
      361 aagatgtgca tgtataataa gttttcctaa taaatggcga ggaagtgtct ctggcaaaat
      421 ataaaatggt gataaactat gtccaaatga ttaattcaca gaaattctcc atcacactac
      481 agttacatgt gcccgtctct tctgttatgc ccttggagat tttcatacta aacgtatgtg
      541 catatttttc atggccactg atatttgaat tgcagcttgc tcccatgcag aacataaaac
      601 acttcaaact gcataatgct gactaaatta taagttctcc agtggcccga ggtagcaagg
      661 gccataataa tgagtgtgct taagtggttt gtgtagattt tttccccttt aattttaatg
      721 ccctgacttg ctactgcctt ttccaaagct agggattgtc tcatacaatc ataacaatag
      781 ggaaatagaa actgcattac gctttgaaga aatgtacaat gcaaagcaga agcttcagtc
      841 atcaagcaca gtgatagcca attcagccct gtcagtcaca aagaacagaa aatgctttgg
      901 ttactctgcc catacttgta gtcatatttg ggctctttca tgtataaagg cagttcagac
      961 cacgttttgg ggttacacac aaaagctgca atcctaatca cattgttatt atgtacgaca
     1021 cacacaaaaa acctcacagc tga
//
LOCUS       KCLA01001204            1143 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19632upu ultra-conserved element locus uce-2037,
            sequence.
ACCESSION   KCLA01001204
VERSION     KCLA01001204.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19632upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1143
                     /note="ultra-conserved element locus uce-2037"
BASE COUNT          273 a          247 c          285 g          338 t
ORIGIN      
        1 agatggactt gtagaggctt ctataggcct tgatttgccc tgctttgctt ccatagggga
       61 aggacccaag tctctggtgg aggttggata tgcactgtcc tgttcagcaa ccagaaacag
      121 aagggcagct tgccttttct gctcctttct tccctgataa tgcttgaaat tcaataaatt
      181 cctgacctca gaacagttca tctcatctct tttctaactg gttttcaggc acaaagtgtt
      241 tattctccac cgtaatcggc agccctgtgg tgaccagcac agcacaaaac ccagggcaga
      301 aaacagtggg tgtttgcaag gcgtcagctg agggatttgg aacattccct ttccagcttt
      361 gaggagctct cacagcccgt gtggaccatc cttctgggtc aatttcatgc agactatttt
      421 ctccccttcc gtatcaatcc tgaatgaatc caggaggtgc tctgcagcca gcatggcttt
      481 gcattgattc tggccagctt gtttacagtg ttttggcaag ttgctgatgt acttggccct
      541 ggggatagag caggggttaa ttgctgctaa actcgcggtg ccaagtaacg gttcaggctc
      601 tgtgctacat taaagatgac actaataagg aaagagtgca ctggattgct gtgtgttgaa
      661 aattggactt gtgacagaaa cgtggagcag agctgatgta atagcagggc cttaatgcaa
      721 ttataagtgc tgaacacgtg tcacacggag ttaaatgata cattaatgac tccaaacagg
      781 tgatggagtg ttgctctttc agcagagaga ggtgtttcca aggtcaggtt gtcattaatt
      841 tgataatctg taaactggat ttccttccaa ctataagcaa aatcagcttc cactctgatt
      901 tttgtcatgt gtttctcgtc ggtaccacag gggtgaagga ctggaggctg ttgttctcag
      961 cataattttg tgtacccctc ttttgttaga tctctgctgt ttctaatgca atatgtgtgt
     1021 gcccagcgct ctgcagccag gtgtgagctc tcttgccctg tgctccaagc aggctgaaca
     1081 caagccaaga ggtgtgtaga tgtattggtg tagcattgag ctgagctaat aagctttgct
     1141 gag
//
LOCUS       KCLA01001205             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19648upu ultra-conserved element locus uce-5682,
            sequence.
ACCESSION   KCLA01001205
VERSION     KCLA01001205.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19648upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-5682"
BASE COUNT          248 a          244 c          250 g          237 t
ORIGIN      
        1 gggattttaa aatccatttt ttttatcaac tttttttatc ccttccgcag tcactaagtg
       61 ctccttcctg taaatgcctt tcttgtgtca gggcaggggt gctgcgtttc agggcgatgc
      121 acttagcgtg tccctgtaaa tttttaatct ctggaaccag tcgcttcaca ctccctgcct
      181 cgaagaaagc tccggcactc gcgaccaaga ccctgcgctg gaaatcagcg acgaggccgc
      241 ccagtctatt taaggatgca aatgcgtgtg aggagttagt gcagatgttt tcctacaccg
      301 actctactcg ctgggtttca ccatttccat aaagcacatt aaaacaagtg tgtgaacacc
      361 cggagatgaa agtaccaagc actcctgaga cttccagtgg aaagtagagc tgcctgagtt
      421 ttctccaagc agacaggaat gcccatgatt cagcagcctg agtaaataaa agaggtcctt
      481 atttcctaat tttactggct ggccgcagcg cagcagcctc tgtgctgctg ccaaagggga
      541 tgcagaactg gaactacacc cagcagctga aggactgtct ttgttagcca gccaggcctt
      601 gctgaccatc ttctggcaac aaagcaagcg tatcctgcga ggaagacctc catctcaggc
      661 tcgatcgtgc tcgagtctgt ctaataggat ggaacaacag ctttagcctg gtctgttctg
      721 gaggaggaca gctggagact cagttagcag cagagcaaca cctgttcagt cacatttatg
      781 ggggaaagtg ctcgctaacg gagaagtgag gtaataccag gaggagttat cccgagggag
      841 ggagggggaa gcatcagagc acaaaagcac ctctgtggag ttagcagcca ggcagtcatg
      901 tgccatcgcc agtagtcagg aggacttaaa agtgatcttg tccctcgtgc tgccgcctga
      961 attaacagca tcacttcag
//
LOCUS       KCLA01001206             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19664upu ultra-conserved element locus uce-273,
            sequence.
ACCESSION   KCLA01001206
VERSION     KCLA01001206.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-273"
BASE COUNT          284 a          177 c          164 g          241 t
ORIGIN      
        1 cccctgtaaa aggcacttca atgaaactac catgattgac aagtacttca caagcaagcc
       61 ttggcaacac ttaattcaag cccgtctcct cgtcatttta agcaaaattc cttcacaact
      121 gtttgtcttt acaataactc ctacaaagct cattagtgcc agccttggtt tatcccccat
      181 gtcgtgcatt tatccctggg atgcattatc aacatgtggc acatgtcctt gacatgcaca
      241 gaagagttgc accccaggat ggcagcatgc atgacaatac tgttgactct tactccttta
      301 tggttgctgg gatgtaactg agaaatctaa taactgtgac agtaggcctt tcgttttttc
      361 cttgcctttc agacagtgaa gctgcacaga cactaatgaa aggttaaatg aataggaata
      421 gctgacaaga ggtacaataa agaaggaact tggtaatcca cagacactga gcagagatcc
      481 ttggctcaag cagagaaagg acagcacatc gtcgagtcac aatatttaaa acagcttgct
      541 atacacagag gcttttgtgt ctgggtacat gtctggcttt ggaaaaaaaa aagatactga
      601 aaagtaattt cagcacgggg cactttggca aatgtcaggt cacagaaaag gaaaaatgtt
      661 ttttatttgc tgttacatct ttgtattcaa cattaaaaat cactgactag aagaacagaa
      721 cacagatttc aaaataatac atatttgaca aacatgataa agttacaaca ctaattcagt
      781 gtgattccag ctgacagtat ggtgagtgtt gtacatacac tcaacttcat ttacagatga
      841 taacagctca taatgtgttt tgcaaa
//
LOCUS       KCLA01001207            1090 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19680upu ultra-conserved element locus uce-1988,
            sequence.
ACCESSION   KCLA01001207
VERSION     KCLA01001207.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1090
                     /note="ultra-conserved element locus uce-1988"
BASE COUNT          301 a          216 c          240 g          333 t
ORIGIN      
        1 gaatgtttgt taaacagggg gaaaaatcaa actagcattg tcatgattct aagagaatta
       61 ggtgatgcag gaacaggaag aatctgagta gcttgcattt aattagcact tactggtaca
      121 aaataaatta gacagatttg tcttgtttta tgagcaagat cctgtttttc tatttcgttt
      181 tctttgtgct tttggtaagg acagatctgg ctctttggat actaaatagg caactaattc
      241 aattggtgct ttctcctagg gtctgcttgc aaaccagtgc caggctcaca ggctctttgt
      301 gtactgccct ccctgcatgt gtctgtgctc ccctggctag tcagtttttt tgtctctgat
      361 ggttaataag ctttgagcct agtagtcaaa tgtggtggga acggggacaa gacgagggtc
      421 cttagtgaag gtgtttgttg ttaaatagaa caattcagct gtctctttag aaaacttgac
      481 aaaaggaaat gctccctgct gaaaattttc ttagcctgtt gcacaaaaga tgaagtttgt
      541 ttaagaaatt gctgctaaag aaagcgtcaa cccattaagg taattatatg gaacctgtgc
      601 cgtataacag cttaattgat gttaatgttt gtctaattgg tgattgggag agtgcaaagg
      661 actaaaggtc ttcatagcac tttcagtcat ggctctgaaa ggggttcttc tggttttcac
      721 agttataaca atgcctgcgc gtctttctca gattacgcct tgttttcagc cccttacagc
      781 attctgctcc actacttaaa gcgtaaaata agggtgaaga gccattgtct aatgcagcct
      841 ttttcaaaga gtgtttctga cagggattgt tctaggaatc aggcaggaga gaagggagtg
      901 cgagaggtga aagccactat cacccacttg tgtcacatcc ccaatgagcg gcaagagccg
      961 cctaattgct gcgtggtttt tttttacctc caaacgccca ttctcttaaa caagatcctt
     1021 gcaccagtgc cacatgttcc tgtggaatct atcaaacaaa acaaaacaaa aaacccaccc
     1081 caaccttgct
//
LOCUS       KCLA01001208            1134 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19696upu ultra-conserved element locus uce-6049,
            sequence.
ACCESSION   KCLA01001208
VERSION     KCLA01001208.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19696upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1134
                     /note="ultra-conserved element locus uce-6049"
BASE COUNT          243 a          274 c          244 g          373 t
ORIGIN      
        1 agaagttggg ttaatgaagc ctttgcagtg actcatgtct ggttttacct gctttgtgcc
       61 taccaagagt acaaattcgg gactgccatg gttattctgc tgttgctcca tctcaattta
      121 gactcttgag cctggtctga ccctccttct gctggtggat ctgatcgcct ctcatctatt
      181 gagaactgca aaggccttac tcagtggtac ttgtgactct attattccca tgcagcttct
      241 gcactttcat catttcagtt aatgcagtta aaagcccaag tgaaaatcgc cactatggtc
      301 tgtttagcta gtgcaaaagt cttccattcc agaagtggca tgtcagttga aattcgtttg
      361 atggttattt actgcaatgg ttttgaaaat gacaatgttg tttggttttg tttcttttcc
      421 tcattctttt tgaacccctg ttttatatgt gtgtgttggt tttttttttc ccctctgcct
      481 agacctggtt aaccatttct gtgaacaggt cctcaatttt ttactttgtc cctactttcc
      541 tgtcgtagcc ccatcttccc ctggtgtcga ctccgtaccc ttacagcgca caggcagtca
      601 acacggcaca cagaacgcaa ccgcgacctt ccagagggcc agttatgcgg ccggcccagc
      661 ctccaattac gcagacccct accgacagct gcagtattgt ccttctgttg aatctccata
      721 cagcaaatct gggccagcca tcccacccga agggaccttg gctaggtcac cttccattga
      781 tagcattcag aaagatccca ggtgggtgaa accttcattg tctactattg tctactctac
      841 ggtttgcaat tgcagtttgc tatgtttctg ctgttcaata gcaaaacaaa accaactcag
      901 ggtgattgca catgaaatat ttcctttgct tcacagcttt gtcctggtgg tttactgtgg
      961 aaggctctca tgagccctaa cgggaaatga gatgataggt gtggtctgga atttgtgcga
     1021 ttagtctgct ttgggtaggg ccgcacagtt tattctaagt cattttctgt gacgatgtgc
     1081 ggagtggtac gactcttgac tctctaacat tgtggattca gttttcacgc tgct
//
LOCUS       KCLA01001209             434 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19711upu ultra-conserved element locus uce-253,
            sequence.
ACCESSION   KCLA01001209
VERSION     KCLA01001209.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 434)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..434
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19711upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>434
                     /note="ultra-conserved element locus uce-253"
BASE COUNT          116 a           95 c           77 g          146 t
ORIGIN      
        1 tacacacaca cagtgctttg ctgggcgagt gctctttgtt tctggaaggt tgaggagatg
       61 caagcttgga aacaccaact agcacaggcc cacctctcat ttgtctcact tttataactt
      121 tgaaagtctt ccctcacttt ggtaataatg taaagtatca actaaaaatt gcaatgcatg
      181 catttcattt gagttttatt gccttaacag acagcattag attacaaaag aggacatttt
      241 tcttctcagt tttagcttat tcttatgatt tatgattaga tacagcaaga gttcataaac
      301 ttccctgacc tgctgacagt ttttacaggc tccttgattt atttccatct caaacttaac
      361 agctttcatg tgactgatat tcctagagtc ctggcatggc tgcagtgcag cctgtgagag
      421 ctcctctaat ctcc
//
LOCUS       KCLA01001210             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19726upu ultra-conserved element locus uce-5646,
            sequence.
ACCESSION   KCLA01001210
VERSION     KCLA01001210.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-5646"
BASE COUNT          248 a          164 c          172 g          199 t
ORIGIN      
        1 cattcttttt gatttaatga acactgctac ttctaaaaat gagccactgg gcactccctg
       61 atgtcaactc gcagtcccgt tcgctacctt tgacttggat tcaagtattc attttgcagt
      121 tccaaggcat cttacctgaa ttcctctgga ggaacgagga gggcatgcac acacaaacac
      181 tgaagctcag aattaatgct aatctttcaa gtgttccagc tctacctaca gcaggtactg
      241 atcatggcag gagcaaggac ctgtttcagc atgtgttaca gccagcagcc tgtgtcatca
      301 gaaatcttcc acaacacaaa gcagtctcgt tatttaaata gtgaaaacca ttaccctagt
      361 gtcttctaac tccctctgga gtttgtcagc tttggtcttt tcaaagagca ggctctgttc
      421 aagctcctta atgcgggcat gctccagttt ggtctgcgtc tgttagtaaa aagggaaagg
      481 aagagaacac aacggtgcca ccatcacatg ccagcacaag aggagggagc cacatgcagg
      541 ccgtgctgcc agaatcttct accaatgatg agcagagaag atgcagtggt aaaatgaaca
      601 gggaaatgct atggatgagg aaggtggact gagagtgtaa atggactgac gtgtggaaaa
      661 aaaaaagaaa ataatcacaa acaaaggaat atgaacaaaa gtttcatgca gccatgtaga
      721 agttatttat cagtacatga agttttcagc acaaattaga atagttatga aaaaaatcta
      781 tct
//
LOCUS       KCLA01001211             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19741upu ultra-conserved element locus uce-4832,
            sequence.
ACCESSION   KCLA01001211
VERSION     KCLA01001211.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19741upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-4832"
BASE COUNT          252 a          160 c          163 g          238 t
ORIGIN      
        1 cttcttaaac acttctctct tgcaactaaa ccactacaga ttaataacta ttaaaaatac
       61 actctgttgt caaaagacac aaactgatcc gaattcactt cacaaatatt aatacagact
      121 tgtgtgaaac cgaaagataa atgtatgtga accctgataa cctcctgtaa cattgtgctg
      181 ccttgtagat ggtaatgtga gttctctcag tatttatgtt gaagtttcta acattcaacc
      241 tagtccttat tctgttaatt taataataaa agatgcttta tccatttgtg caaaggtaaa
      301 cgcagattgt atctttttta atggtacggc ataaaataac ccctaaatga agctgctcta
      361 tactatagag tactttaaca tgtatagata tcttgtaaac ttgtattgtg gatgtgtaaa
      421 taatacgttc tttgggtttt taacaccgca tgtaaagtca aaataaaata ttccaatgta
      481 ccgagtgctt gagagcgtta ttggtgagac caggtgtcac tggtgttaca acagaggaaa
      541 ctctgtgctt gccagcagct ccacagagaa aagagagacc ctaccagcct tccagaggaa
      601 ttgcagaggg aggccttttg catgcctatt gctgtcacac tttgtgcatg ttctggaggg
      661 acagtggctg ccaatgactg aacctcctca gtgaaagata aaccagcaca gagcttggca
      721 ggcagccgca gagtgtagta tagccaacga gacagtgctg tatttgatgt gaccgtaata
      781 ctggagcgtg atacaaattt cagccaggcc ctg
//
LOCUS       KCLA01001212             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19756upu ultra-conserved element locus uce-3033,
            sequence.
ACCESSION   KCLA01001212
VERSION     KCLA01001212.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-3033"
BASE COUNT          153 a          115 c          182 g          112 t
ORIGIN      
        1 gcgtgggaga ggaactctca ttctgggaca gaaaagacaa gagaaaggga agaatttact
       61 ctggcaatgg tcctgggagg caaaaggata cggtgataaa cagaggggct gtatgaggat
      121 aggcagggag agtgagagga gtgggagata ccagaggggt ggggagctgg gggaggaggt
      181 gagagagtga gacaggagaa gacagcgtga ctgtgtctga tctacactga cgagtaccaa
      241 tgttaactgt cagctcttgt cgccaaacta aatcacacct ggaattggag gcagcaagga
      301 gctgatagcg tcagccttag agagccaaca agtcaatcag agcggaggtg cgtggagagc
      361 caccagcttt atagggccca gtgctttcat tcatcgctgg atttacacct gtcagccccc
      421 cagcagaagg agtgcaccga gactgccttt agcagcactt aaaaagggcc aactgatgtg
      481 ttagacactg tgcctgctgc tcctcttgcc cccagaggtg cattttgtgt catgggggtt
      541 cagctgcctt tgaagctgaa gc
//
LOCUS       KCLA01001213             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19772upu ultra-conserved element locus uce-5906,
            sequence.
ACCESSION   KCLA01001213
VERSION     KCLA01001213.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-5906"
BASE COUNT          206 a          185 c          179 g          226 t
ORIGIN      
        1 acttggttag tttctttttc aaatgctgtt tgtgaattcg caatgtgtgt ttggccaagc
       61 aattatatgt gtggccatat tgtgtgagcg cagcagtctg gtgcagagca agggatgcca
      121 catcatgtga ggcgtttcat ctccactagt gactgagtcg ctgtggtgaa tgaatacatg
      181 aatacaggac agccaggaga gattaaacgt attgaccagt gcctccagtc accatacaaa
      241 tgtcattgtt ttttaatttt gtccccctac cctttcttgt tttcctgaca cattttggtc
      301 cccttttggc ttctcccctt ttcccttaag tagagatgac acagatcaat acctttgatg
      361 gaaagtaata atcaggccta ttaagtgaca aaggtttact ctgtaacagc tgtgctggcg
      421 ggagaggaga gcttgtctga ctaatgaatc atgaaacaat caggcagtag ccatttgtgt
      481 ttagatctgt aaatatggtg tggttcaagt gccagaccat ctccagcact ccagctgggg
      541 gcacagatgg tccacattca gaacagcaca agtgtaaaga aaagcttccc cccttccctc
      601 tcgccttctc tgtcccacac tgcccctctc aaaggatcag agcttcagga gaaacttgtc
      661 gtgcaggcag caatcctagc aatggtcttt cagatgagca gctcccacca aaacgtgtgt
      721 tcgctttctt cgccaagggg aacaaaggcc aagaaaaccc tctaaagtcc tgtgttttag
      781 acaaaacatt ggggtt
//
LOCUS       KCLA01001214             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19787upu ultra-conserved element locus uce-2213,
            sequence.
ACCESSION   KCLA01001214
VERSION     KCLA01001214.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19787upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-2213"
BASE COUNT          200 a          110 c          111 g          191 t
ORIGIN      
        1 tattgataaa caattctgaa aaatctctaa acccgcattg tgttattttg tcattggaaa
       61 taatgtgact tatgataaac aacagcttca cataaaatgc taagcacagt tgaaatcttg
      121 tcagaattac ctgtctcgcc ttgcacttag aactgaagac tgtccattca ctatggaatg
      181 atgagttatt ggtggtgatg ctttggaagt ggtggaggag gtagtagagg aggaattgtt
      241 agtagtgagg tctagccctc catgtttaat gccattgtct tccatactgt gaactccagt
      301 cacttctttc cataactgct gaatctcagc aggacttaag ccagctataa aatgaaagag
      361 aaccccagta atataacaaa ataaagtgtt tcatataatg agctcagtgt tattaatgga
      421 ttaatgccaa caataaagct gatgctgttt ttccagcaca atcaacatgc agtacaatat
      481 aaattcattt ttcttctgtc agaatctagg taatctacct gtcttctcct gtgttacagt
      541 caattagaaa tcaccaattg taagaatata atattccttc taaaacactg ctcaagagtc
      601 aaagtgtgaa ag
//
LOCUS       KCLA01001215            1096 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19803upu ultra-conserved element locus uce-2211,
            sequence.
ACCESSION   KCLA01001215
VERSION     KCLA01001215.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1096)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1096)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1096
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1096
                     /note="ultra-conserved element locus uce-2211"
BASE COUNT          317 a          277 c          231 g          271 t
ORIGIN      
        1 tgttgcccaa cagagtttgg gcaaccagga ctcccacaaa ctgtttgcac gtcctaaccc
       61 cacggcttta agacgcagca catataccga cggcatttca gaagagaaac tttctgagct
      121 agctcactgg cgaacagcaa acgaactcac tagcccccga aagcaaaaaa caagccacag
      181 attcgcaaac accttttgta aaaagtgctt ggaaatcctc ctcgctcgca gttacaatca
      241 cctagcaacc tatgctactg ctgctttcag ttttgaacag gcagccttca cactcacaga
      301 ggcatcggag ctcaccgatg cgacggtaag tttaaagcaa aacaaaaaca acagcagaga
      361 gactggtttt tcggtattga aagaaatcgc ccctaccttt cttctgagag tacgatggcg
      421 actgcacttg agaaaaagta ggtttttctt cgctgaaata ttcaggttgg ttgtactgat
      481 tcagggccat gtccatgtca gagtactcgc ttttaaacac gtttccaggg taactacagg
      541 tataaggctg attcaccgcc caggcctgtt ccatatatat gttgttaccg tgcaggacct
      601 gagcatcaca actgttgtaa ccctgattct cttcaatata tgtgcaataa tcagtggact
      661 gcatgtagca actgctaccg gcagctgggt gcacttcata tatttcttgc atacagtagt
      721 tcattttgtt accctatctc agcttctact ttacgtacac acacacatgc atacacacgc
      781 aggcatgcat acgcatggaa cgggagagca gcgatgaata tacaccggca aagtcgactg
      841 caaaacagcc ccttttactt gggagcagca cctgatgtgc taaaatccta tttatattgg
      901 gacagcttgt gaactcccct gccagtcaaa catattggga agcagattta tgacagtcaa
      961 aggtcttaat ctgtgactgt aagttaattc cgagggaaga cggcaggaag ggagcaatga
     1021 ccaccagaca aaggagcgct gtcccgacaa ccctcctgtt cccccgtgtg tccgcaataa
     1081 tcattttata aagcat
//
LOCUS       KCLA01001216            1166 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19833upu ultra-conserved element locus uce-1101,
            sequence.
ACCESSION   KCLA01001216
VERSION     KCLA01001216.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1166)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1166)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1166
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1166
                     /note="ultra-conserved element locus uce-1101"
BASE COUNT          354 a          204 c          276 g          332 t
ORIGIN      
        1 tgtaggattt caatctggat gtattaaaca gacaacagat aaaaattacg gtttgtgggc
       61 atcttgcttg tgctgcagaa cagaaggcta atgtctacag taagcagcac cacctaactg
      121 tggtagatcc cgtaaatcct ttatacttaa aggaaaagaa attctgcttg ctctgacatg
      181 taatgtagaa cttcctacct caagcaacac acccatctgt caaaactagt ctgtaaggca
      241 gggtcccact ggatgattgg aaaggcagaa cacagccaca ctatctttca ggcttagcaa
      301 atagtctgtg ggtaatattt atccctgcgc atgatctgtg ttgcagaaca ccacacatgg
      361 ctgtgtgtgt ctgtgctgtg aagtttagcc ccaaagacta agtttgaaag ggcagaagga
      421 aatggagatc tgccaagctt gctggctgga gtcatggaca agagcaaggc ctgtctgaac
      481 tgccactcag tttttattct gtgagtttgc agggttggtg attagagtgg ctttcgccca
      541 attatgctgt gattattcca ctgcactgta attgactggg gagatatgct aatacctgtc
      601 atttgggatg ataaaagatg agcggaggac gcaatgcatt atttagctgg ctgtgtgata
      661 gatgagggat gcgcagagtg ctttaattgc tgagaagaga ggttaagctg aacgaacgga
      721 tgaattagaa atgagttttt ttatggcttg tggaaaagtg aaataaaggg aaatgtgctt
      781 taaaactgta gcagcagata gaagcaaaca cagcaagaca aggtctttta ggcagcttac
      841 tctcttaatt taaatatata agacaaaaca cagtttagcg ttcagtaaat aatagtaatg
      901 ataagaaatg ctcagcgagt tcatatcctt gaaaaaaatc actgtaaaca gaactgggtt
      961 tattcgaggt gctatttggc agtttggaac cttttccatt tctgtttcac ttcagacttt
     1021 taaaatctca tttctaaggg ctgtggtacc accggtgaac agtgtgtgca tggatcagat
     1081 acagatttac ataaatggta tccgcagaca tatacgtatc tgggaacatc tctggagtat
     1141 gtgtgttaca cagttaataa gtgcac
//
LOCUS       KCLA01001217             247 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19847upu ultra-conserved element locus uce-2475,
            sequence.
ACCESSION   KCLA01001217
VERSION     KCLA01001217.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 247)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 247)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..247
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>247
                     /note="ultra-conserved element locus uce-2475"
BASE COUNT           93 a           40 c           44 g           70 t
ORIGIN      
        1 ttaaaaaaaa tagaaatttt gcccacatat acactaataa aaataaatct gtttccgatt
       61 actaactatg cagcacaggt gcttgtttgt tacgagagag gcatgttcat taattttcag
      121 ctatgaaaag tgcactgtgc cataaatata caattcaaaa tgtactgctg ataaatgaat
      181 acacagattg ttaatgtgcc agagtagggt attgggcata aaacacatgc caaacaggag
      241 cacattg
//
LOCUS       KCLA01001218             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19862upu ultra-conserved element locus uce-1918,
            sequence.
ACCESSION   KCLA01001218
VERSION     KCLA01001218.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19862upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-1918"
BASE COUNT          159 a           76 c           98 g          163 t
ORIGIN      
        1 caatgaaaca gcgaaacagt taatcgccgt gctaattatt tgtcctattt ttcttaatac
       61 aaattaaatg tttcacttgg ttaatgacaa gtttgatcaa acagtttcat aaactgatgg
      121 attgactttg aaatgaattc agggggaaaa aaaaatgaca tgatgcagat ttggcagagg
      181 gccgtctcta gtgggaacag atgcccaaca aatttggcga ctagttttgt tctcttctat
      241 ctgttgcagt tcacaatcct aatgaatgtt atgtttaaat aacatgaata aagataaagt
      301 gaaaatgaat tcaactccag tttgagcagc agaatagaaa tgagcaaact gtattatctt
      361 ctgccaccta atctgggttg aatttcctct gtatcttttt tgtttgttga agaatccttt
      421 tcttgagtct ccttggccat tgacaaggtc ttttgagatg aatatgaaaa gatagattta
      481 aaggttaagg ccaggg
//
LOCUS       KCLA01001219             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19891upu ultra-conserved element locus uce-121,
            sequence.
ACCESSION   KCLA01001219
VERSION     KCLA01001219.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19891upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-121"
BASE COUNT          127 a           62 c           82 g          170 t
ORIGIN      
        1 gtgtttttga aaatgtacaa aatatctatc actactgata ggaggttata tttctgtgta
       61 gaaatgaaaa atggtttgtt tttagcatta gtgtagatgt acacattcca gcaaatgtat
      121 ttgcaattat gtggtcaatg ctttgtgata taaatgtact ttttcaatgt atactttatc
      181 acttttaaaa tgcctgtttt gtgctttaca ataaataata tgaaacctcc tgtgtcggta
      241 agttggatat atgggtatat aaagaattat aggattgatt tgcaacgctg attcaaggta
      301 cctgtacaca aaatgaggtt tattccccct cccatgaaac tgttgggttt aaaaacatgt
      361 tgttagcttg tttttcccct cttgcagaat agttgtagat ggaggatttc tttcattcat
      421 tgtattttgc tgcctagcat c
//
LOCUS       KCLA01001220             741 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19907upu ultra-conserved element locus uce-7175,
            sequence.
ACCESSION   KCLA01001220
VERSION     KCLA01001220.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 741)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..741
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19907upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>741
                     /note="ultra-conserved element locus uce-7175"
BASE COUNT          147 a          202 c          225 g          167 t
ORIGIN      
        1 gggctgtgag ctggctgtcc ccacgctggc ctcctcagcc ccagggcatg gcggcagcgg
       61 gagcagaact cgctgtgaat gagaactgcc ctttctgctg aaggaggttc ctgccctccc
      121 cgcaaacctg aacgggaggg agcgctttcc ctgccggggg ggagctgtgc gtccggcccc
      181 ggcatctgtc gaggttcggg tgcccccttc acacctcgcc ccaccgccac cgtttcccca
      241 gaagggagcg agggagaaaa agccatttaa tgcagacaaa ggttgtatga aaatataatt
      301 ctgcttttgt tagcagcctt caagcgctaa aaagcgtcgc ttttgttttg ctgtaacgtt
      361 gtgaaaacct cgtgtcggat cgagagccgg ggccctctcg actaatcgcc tctcctttgt
      421 gtttctagat tataggggca attagtgttg tcaaaacctc tggcaattct ctttgctctt
      481 gacagggtgt cagtccgctg ggcgagaaat ggaaggtgtt ataactctcc ggtaattagg
      541 atgcctccga tttgaaaatg ccagcgaaca cgtatgaggg gccgccggca gcgatggggg
      601 tggggagccc tcccggacgg gagctgtgga tgagcaatta attaggggct ctcattctga
      661 ccacgttgcc agctgatgaa ttggccaggg gaaatcggtg agatgcctcg ccgcagccag
      721 cggcccgcgc cctgctcggt c
//
LOCUS       KCLA01001221             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19923upu ultra-conserved element locus uce-4578,
            sequence.
ACCESSION   KCLA01001221
VERSION     KCLA01001221.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19923upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-4578"
BASE COUNT          165 a          109 c          104 g          209 t
ORIGIN      
        1 actcctctaa ctggcttgct tccttctccc aaccagcaaa gcaggttgct gaaattgtga
       61 cgcacacttt atgaaataaa aattgtactc aatctttttc ctcagtccac cgtgccaaga
      121 atgcttcaaa tgaagtgtat ggccatgttt aggcttcctc gatctaaact ctttaatgga
      181 attccattta aacccatctc ttgaatgtgt cttgttcacg ctctttccct tgcacagtat
      241 aatggattct ttaagctttg aaagtgagtt gttgtggcct aaagtaacaa atcagttttg
      301 gaatgcctgc tgtctgttgt aaattatttt ggggtaataa attttctggt acaaagcaat
      361 aggcagagtt ttcataatgt tgaaaagttt ggacttgtct tgaagggaac aatgtcgcta
      421 aagcaatgca ccagttccaa ctatttgtta ttacaaaaga caaatttttt tccttaaggt
      481 agaatcctca tcagatttca tgctttgctg taacttgttt tatttcgtat gttagacaaa
      541 taaaaatatt tgagcatagc tgtgtatctg ttacatcttc tagtgta
//
LOCUS       KCLA01001222             953 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19939upu ultra-conserved element locus uce-3111,
            sequence.
ACCESSION   KCLA01001222
VERSION     KCLA01001222.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19939upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>953
                     /note="ultra-conserved element locus uce-3111"
BASE COUNT          263 a          211 c          196 g          283 t
ORIGIN      
        1 caccacagtt cagctgtgct tggactgcaa gggtgacatg gtctgccatg tatacactta
       61 aggaatactt cactcaactt caaaatatca gcggatcaaa aagcagcaac acaatttcta
      121 agcactgggt ggaatacagt caaatatggt acagaagata tattgcttca agtgagggcc
      181 agaggcttct taaatttgta gctcagtaaa aaggagtcct ttcgatggaa gtaacatcca
      241 cagtaagaaa atgttggaat cagatcgctg ttccaagaaa aaactgcatt gcatctgtta
      301 atttctgtga tattagtttt tccatgcact tttcccttca gcacagttat ttaaaaccaa
      361 atcctcactc accttagact tctcctgatg tagctcaatt tgaatgtctg ttagcttggt
      421 cctgagttcc tcattggcag cctgaagggc aacaatcagc gcctcaggct tttcgccctt
      481 gctacgtccc ttttttgaca tggtttctga tcagtgagag ccacgtgttt aattctttca
      541 tatataatct gccatctttt tctgtcccat tcagtgccag ttagttcagt acctactgtg
      601 tgacattgct taaggtcctg gactcagctg ctttggaagc actgcaggaa ataagacata
      661 gtattatttg ttgttggaca ctgcagcatg acagctcaca tggttataga acacaagaga
      721 tagctcactt ctccagacat tgcaatcttt gtctgaaaac ctgccaggga gatcccaaca
      781 caatttggct tccgtaggcg gtctgaagta ctagtggata ttccatattc cattttcctc
      841 tgctcagaaa ggggcaccac gcagtgaggg tagagttggt ttaccataag catttgtgct
      901 tttgagagcg cagatctaga aagaataggt cacttaatcc acacctagca gtc
//
LOCUS       KCLA01001223             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19955upu ultra-conserved element locus uce-5371,
            sequence.
ACCESSION   KCLA01001223
VERSION     KCLA01001223.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19955upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-5371"
BASE COUNT          165 a          126 c          128 g          207 t
ORIGIN      
        1 aacacaggtc aaggagctcg tgttatttgg aatgtattcc tgtcttgtag attttcatag
       61 aatcttgctg gtggctgaag tggtcttgtc ctagtcctgt tgtgactaga gagggacagc
      121 tgtgttaggt atgtgcctgg caaatggaca tcaacacatt agaaacttgt gcacatacgt
      181 gcagttttcc tgttgaattc ccaccacaca catcctagcg tggaaaagat taatgaaaca
      241 tgcactgctt gcttagtgga tgtgtttcta ttacaaaatc ttttactcct tctctggaga
      301 ccaaatgtga aactcatttc aaaaaatgta ggtggttcag atgaatactc acaccctatt
      361 tcagcaaggc aaaggtcctc catgaaaagg tcatttttct gtagcttaaa agcctgctgc
      421 tgttttctag gtgtaaagca ccaagactca cagaattctt tcttggcatt tttgaatgcg
      481 cctacctctg ctctggatca atttgaagta agtacacagc tatcctcact ctcttttagt
      541 cactgctgta acatgtgggt tacatgcata tttgctggga gtttgatact gtattttaat
      601 catattatcc catttaggat gatcct
//
LOCUS       KCLA01001224             960 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19970upu ultra-conserved element locus uce-7654,
            sequence.
ACCESSION   KCLA01001224
VERSION     KCLA01001224.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>960
                     /note="ultra-conserved element locus uce-7654"
BASE COUNT          275 a          220 c          213 g          252 t
ORIGIN      
        1 cgctacaaag cacagtacac aatcctctat tctcttgagc ttcgcttgag tcagttatcc
       61 ctgccacccc tccaaataaa ataccctacc accacagaga agtcagaagc cttacggagt
      121 gctgttaaac agagtctcgc aggtgggcct ttcttcaaaa aggaacaaaa taatgagaag
      181 tatcatgcca gttctagtcc cattgagtat ttacaccttg gacagcaaaa gtctttgctc
      241 acaagaagta gaaaacagat acaatacatg gcttgaaaaa tgaccagagt atgcacctag
      301 agtactgtac actaaataaa atacacaagg cagcaatact taggggccag aaacactgct
      361 tactacaggt cggtcatgga atcataattt acagtaaaaa tgggcatgtc ccaaggctca
      421 attctgtttt tgtcatttac agtagaataa atatttgtcg ctattgctac actcggttta
      481 cattctaacc tagtaaatgc ggaaagctag tgtaaagcat acagattacg tgtaggtccc
      541 atacgtatga cagtttgttc aagactagta ggttctcttt tttgttctgt tttttttaac
      601 ctttttaaat ggctaggagg aggaggaggg ggagaagaga gttgtgctta caatcagctg
      661 cttttaatgt caaatttaat atcaaagcgt ccctggaagc ggtccttttc gctgtatttg
      721 atgttctgcc cgtaggccct gcactccacg cgcacctccg tgtcgaaggt caggttggtg
      781 aactgcacgg ccaccagcgg ctgcaggtac ttgggctgca gggccttgcc gtagtagggg
      841 tagtactgga gggcaaagcc agagtagcca cccatcccat agtactccac cgtgcctatt
      901 ttgtctgcat cctcccctcg ctagaaggga gaggaagaac aacagcactc aaatgctgcc
//
LOCUS       KCLA01001225             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 19985upu ultra-conserved element locus uce-1081,
            sequence.
ACCESSION   KCLA01001225
VERSION     KCLA01001225.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="19985upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-1081"
BASE COUNT          122 a           79 c           96 g          123 t
ORIGIN      
        1 taattgtacg gctttcaact cacgcaacat ttctctttgt gttgaaagca tcacggtgat
       61 ttatcctcat tattgtgtaa ataggtttcg gcagttctca gtaaataaaa caaagagtga
      121 caggaggaga agggggaatt tgctttccta ccaattagag tagccttagg cagtactttt
      181 aagaggagat aaatcctgca aatcactaaa atgatcctgt cacatgcacc aaatattaaa
      241 atcacacagc ggcgcacttc atacagtttg ctttggttta atgagttggg gtgggcttcg
      301 tcatgaggtt tgcatctcgc agttggggac tgttgattga cagtgaagat catgcccaac
      361 tgcagcttcc taaccagtag ggccagatgg aaaatcacaa ttcatgttta atatgcgggt
//
LOCUS       KCLA01001226             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20001upu ultra-conserved element locus uce-2446,
            sequence.
ACCESSION   KCLA01001226
VERSION     KCLA01001226.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20001upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-2446"
BASE COUNT          198 a          108 c          137 g          205 t
ORIGIN      
        1 tttttaagtt tctgactctt ttgaggacag ggatgcatca agggaagata aaggatgtga
       61 ggaagtagca ccattgagat taaagggacc aaattttacc agcaatcaca gcaaatatct
      121 gacttactta agggaagcca attactgtat tattgcctcc ttttgcacta tgcacagtag
      181 ggatgtcact ggataatggt ttgcatgtag agttaatcac tttgatgcat ttctgactga
      241 tcccagcaaa ttatgttttg gttccactat attaaacaca agagcagggg attatcatta
      301 ataaatctaa ggcacagcat gcataaatct tgaataaatc aaatatcaat tacataggca
      361 gtatctgctg acatctgctt tcatcaaata atatatttga aatagatttt attccacttt
      421 gtcagagtca aaagaatgtt agactggtgt gcaaagaccc ttactccaaa gagttgggtt
      481 atggaggtgt gttcttgctt gctgagcaac ataaaccggc ctttcatttt gctgcttttc
      541 ggttttgtac ataaagagcc cactggtttc acagagcagt tcacatggca aagagaagac
      601 tcatatcttt ggggagaagc tttgttaaat tgtggtttga aggttggt
//
LOCUS       KCLA01001227             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20017upu ultra-conserved element locus uce-417,
            sequence.
ACCESSION   KCLA01001227
VERSION     KCLA01001227.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20017upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-417"
BASE COUNT          252 a          251 c          190 g          250 t
ORIGIN      
        1 acgttcatta atctgttacc agtcttcgct cgccataccc aacctccggg gtgctgcagc
       61 agcaccggtg gaatcgcatc cttatggacc cctggctacc ccgagatgcc tcatacctac
      121 aaccgatctg ttgcctttac aagtttaatc tcggtattaa ggagctgatt gtggaaccat
      181 gtcgctctaa catcttcaac ccagctgtac atcacataaa ccgcgatagg agggggcagg
      241 ctcccggcat tcctagcagc agcgcatacc tttaactccc taatctgtaa tactacaaaa
      301 taccgctctc atttcttccc gagcacaagt ggactaccag caagggtcca acagtgttat
      361 tcctaattac ctttttttca ctcttgatcc tgtggcgctc ataattagtt acctggggct
      421 gcaatccaat ttgaagtgat gacaagaaag tgatccatga aaaagtaata agttaaatcc
      481 aatttcagcc ttcctctaat taaatgcaca tggaactaat gactcaaacc ctaccatttc
      541 agtgataatg gtaattagcg aggtgggagt cactctcttt tttcaacact gtaggtgtaa
      601 accacaaggt aaaatggcag gagcactctt aattacaagt gtcattttgt cagcaattta
      661 cgccgttctg accagtcagg aaggttccat ttgttttccc cttccctgag gtgggtaacc
      721 cagggctgga ctcagacacg ggcagccccg ctctcaatct gatcagaact cacaggtttg
      781 taagtaaaaa accattctct acgtgcttca cgtctaagtg gaaaagctgc tgccaaattg
      841 tactcgaaat cccaggaacg agggaccctg gctcctgctt tcaggtttgc acttcaggac
      901 caacttcttc accacctgcg ggtgtcaaac gccgcaaaaa tcg
//
LOCUS       KCLA01001228            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20032upu ultra-conserved element locus uce-351,
            sequence.
ACCESSION   KCLA01001228
VERSION     KCLA01001228.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20032upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-351"
BASE COUNT          319 a          191 c          176 g          317 t
ORIGIN      
        1 gttgaaaata acaacgccca cttccttgaa atgagtaatt ccacttgtat tgcaattgtg
       61 caaatattga agtaataatt tgatgacatt tttacctata ggtaaaatac atggaaagag
      121 aacttctgta actgttcaaa ggagataaac acctcatatt tacattttaa cagagctgca
      181 gtacagcatt aaggttatca tgatggcctt gtgaacttac atcttgctgt tcttgtgtta
      241 taaggggaaa aagggctgat gtgagaacaa agtactgtca gcaatctacc ctttaaactg
      301 cttagacctg gaaggcacgc tcattgcttt atttctttgc tcatttttct ccaagattgg
      361 tacatctgaa ctacctttct acagatctat acagcaccac tgctcagcaa gaaaaagaga
      421 gttatatttt ccccttgagt taggacgcct cttgacaaat gataatggat aatcaataaa
      481 ctgggaaata tgaggccaca aactttatga agccaagaga catattactt ctgaacaaca
      541 ctcatttccc ttaacaaagt cactactaga ctgtgcctaa taatctgaaa gaaaatcaaa
      601 ggacctgcaa ccacatcagc aatattggca acttattcca ctttaatggc attttgattg
      661 atttttctgc ctaatggtag ttttatactg tagatttgac gctgcttctg caaaatagtt
      721 gtgtgtaata aacatccccg aaggcaaaca gtgaacatta aggttcttgt cttactagga
      781 gtcataattg aagcttgacc aacattgcct ttggcctttt taaagaaatc ttttgcaaca
      841 gctattcctt tctgtttttc ctttctgtga aggacttgat atgtgatcaa ggcattttgt
      901 ttaaaaaatt cataaatagg ctgaccttga caatgacttt gtgtgtttca gtaaagcatt
      961 gacctgctgg aaatggagac ccctgcacta ataaatcaag cac
//
LOCUS       KCLA01001229             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20046upu ultra-conserved element locus uce-3957,
            sequence.
ACCESSION   KCLA01001229
VERSION     KCLA01001229.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20046upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-3957"
BASE COUNT          245 a           98 c          114 g          263 t
ORIGIN      
        1 tttggagtac ataaaacaaa taaactgctt gtttcacaag tgttttttat tatataaatt
       61 aaaaagtgat tcaaatacat gaactcataa gtcttcaaat tttatgacct ctgagtcatc
      121 ctaaataaaa tttgattgcc ttaaggtaca ttgagctgtt gtaaaatata ggttactttc
      181 atgaagggaa aagaatcgta ggaatgtgtg agaatttaat tttaatgcga tttaaaatgt
      241 agcctagcca attgcaatat atatgtttgt catttctgct tttgacttgt actaaacagg
      301 taaaatattc aatgccatct tatagctact gcaagcattg attaaactct ccagtgttca
      361 tgaagactga cagggattca aaggaggaaa tgtaaaactt gaaggtacag cattatagtg
      421 gcatttcact ctatagagct gccaatattt taatccttca tgtaaataat tttgatcagt
      481 tcaattccgt atcttaattt gtgtggcaaa caaaatattg gattgcatta tgtttaataa
      541 ttaaaaatgt gatatcagtt ttcatatatt tgaagttcct gaagaagaaa tgcagttaac
      601 atttttagtt tcaatttgtt ggctttataa aacaagaatg attaaggatt agatctaatt
      661 ttcatactgt gctcaaccaa agtttcatta tttgctttta cagaaccttt agtttctctc
//
LOCUS       KCLA01001230             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20061upu ultra-conserved element locus uce-3214,
            sequence.
ACCESSION   KCLA01001230
VERSION     KCLA01001230.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20061upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-3214"
BASE COUNT          127 a           92 c           95 g          170 t
ORIGIN      
        1 tctgtccaac aggaaccctt tgtattactt ttcaatattg ttttgtactt gcttctccta
       61 agcttggagc tatttatggt aatgacagta ctcatgtatg gcagcttcag tcaaagagat
      121 cgggattggt atgagagaaa aatctcgact gaaagctcgt tattcacatc gttctcttct
      181 cagcttggca aagttgaagg ttaacgtcat ctgttctacc catttcagat tagtcacaga
      241 acttttcttg gtggttcagt gcctggtcat ccagtcagag gaacagtaat ccatatggaa
      301 aaattagctc aatgctacta gactggtggt taatacttga gccttagtta ggaatgttcg
      361 cagcatcttg ggactctttt cttccttgat caatttctta aaataggatt cttcatcaga
      421 ggctgaaaag aggaggactg tactgaagta tatttttttt ccatcaccaa ctctttattt
      481 tttt
//
LOCUS       KCLA01001231             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20091upu ultra-conserved element locus uce-7476,
            sequence.
ACCESSION   KCLA01001231
VERSION     KCLA01001231.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20091upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-7476"
BASE COUNT          245 a          157 c          105 g          228 t
ORIGIN      
        1 aaacaacttg gaatactctt catcaaagaa tctgtatact taacccaagt gctggaatta
       61 agactatata tgctcactaa agcaaactca agaacatctt ggaacacaga ttatgatttt
      121 acctaagcgc tccctcactc ttacgagaaa atttgcctca ttacactact taccttttaa
      181 caggcaaaat tttacttgca ttccatcctt acctcaagtt ttgaggtgct tcaccaaaca
      241 agctgcaaat ttctcggatt tgtttcagtg caggaatgac ccacttgtca tttgtgcgaa
      301 gctcttctat gaaacgatct atccactgaa tcttttgtgt atctcgatcc ttaaagaaca
      361 agcactgatc aagtatattg cagaaactat caaaactccc taactttcca aggtacaaca
      421 gaacatgaaa agccatacaa atacccaatc aactaagtta tgagcactac atgttggcag
      481 aacctattct gtgtcttaca agttctgcct tcattcactt gagtatccag tatgcattta
      541 aaacatcttt tgtttatttc tactcaatga taataaaagg aaactgctat aaaaacatga
      601 aactgtttct taataactga aaaacaagcc tgctagtaga ttaatggatt taattaatca
      661 taattttgtc aggcttccag agaagtttgg gcgagcaaac ttataaaaat tttccctgtc
      721 catagctagg tcctt
//
LOCUS       KCLA01001232             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20107upu ultra-conserved element locus uce-1492,
            sequence.
ACCESSION   KCLA01001232
VERSION     KCLA01001232.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20107upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-1492"
BASE COUNT          136 a          138 c          136 g          166 t
ORIGIN      
        1 ctgtcatttc cccaccaagg tctctaataa aaaattttac catactcaat ccacggccat
       61 gttgaatccc atgatagtta attttccctg acagactcgg tcctggtaat gaacaggtac
      121 ttgtcagact tgccacagtt gttttgggtt ctctgtcagt tttagcagct gggggtcagg
      181 ggtcaccggg ggggggtatt cagcggagac cgcgagacag acggctgtca tgtccttttc
      241 ctgcagattc aaaatggtga acagaaagcc tacgtcttga aaaacaagca gctgacaggg
      301 ccaacaaagg gggtcatcta tcttgaaata gatgtgattt ttaatgctgt aagtcttaac
      361 tttggctttt ttatactgct aaatagttcg gtttagtgaa accttttgtt cccaattcgt
      421 agagaatttc tgtcgttccc ctttttccct aaaccctgac acacaccccg gaacgctgtg
      481 ctggcactgc ctggcacacc cactcttttt gttggcgatg ctagtgctgc taacttgagc
      541 agcagcgacc gccgcgacat gtcgtggggt tagcag
//
LOCUS       KCLA01001233            1037 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20122upu ultra-conserved element locus uce-2462,
            sequence.
ACCESSION   KCLA01001233
VERSION     KCLA01001233.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1037
                     /note="ultra-conserved element locus uce-2462"
BASE COUNT          272 a          179 c          240 g          346 t
ORIGIN      
        1 tatactggag aggatgcacc tgcgagagat gtgcagacct atatattttt attctggttc
       61 tgaaccattt atttttcttt ttatcacttg gaagctttag tttcacattc catgggttat
      121 catgttgtgc tgttaaggta gagcaaacag ttatgtgctt ctttttgtca aagctgtatt
      181 ggaaaatgat ctaaggtgca ctctttctct ttataaccaa aagcctgatt ttatgtttga
      241 aaggaaaatg acataaaggg gacgagtgtg aaatctggca agtcaggagc ggtataaatt
      301 gtgcttattt gaggaggttc agcttaatgg tagagaaatg tctggtgtaa ttggcttatc
      361 agcattattt tttgttacag tctcctgttt tgttatcatt tttgtaggct ttaaggcaac
      421 agcagaaaag aagaaatgga gtctcaatga tggtaaacaa gactgttcct cgtgttgttt
      481 tgacaccatt aaaggtgtct gatgagcagt cggattcacc ttcaggtaaa tagctaaagg
      541 accgcttgta agatgagttc tagtcacaga gccttcctct ggatcagctc tgtagcgtgg
      601 agattttggg actgctggaa taacatttcc acttggtggc tttgtttaac gtctttattt
      661 cctcatcaag tctggtgtcg gaaggacgga ggtgtttttc tattaaagaa ctgaagacac
      721 agagtaaaat gacaactgga acaagcagca gcattaaagg aatgcagagt aaccttttgt
      781 ttggctctgg aactctaatg gaggaccaca tgctgctatt caatgccatg gaaaggggag
      841 gggggtggaa aggcaagctt ctctctcaat tcctgtctct tctgcattgc aatgctcggc
      901 tccttttgtt agcttttctt ctgctggtac catccttatc actgcagcag aaccttgacc
      961 tttacttcag ctggttaagt tgcgtcattg taagagattt ctatatctat gtttagcaca
     1021 aattgacagt cgtattt
//
LOCUS       KCLA01001234             930 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20138upu ultra-conserved element locus uce-908,
            sequence.
ACCESSION   KCLA01001234
VERSION     KCLA01001234.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>930
                     /note="ultra-conserved element locus uce-908"
BASE COUNT          292 a          170 c          168 g          300 t
ORIGIN      
        1 ttctacgcaa ccaagccaag tcatgctggt aaatttggct agttctacac ttctgttgat
       61 gttttgtaag gtacctttac ctatgaagca acccacggtg agctatacga caactactac
      121 tactgcctgg ttatttttta tatattttaa gtttactttt ttccatttca tgagaaccta
      181 ttttaaaaaa agacacagag aagcttattt tattccttat tagctattct acgatatgca
      241 tcatcattat actattatac accagttatt tttagtaaat cctgattact gcttcctgaa
      301 gaagaaaaaa ggaggacgac agcgattaag ttatttgttt agttttttag attcagctgt
      361 aattgctggt acacatctcc ctgactgcac acatgaagca ggttgaatag aacactgaaa
      421 ttacctcctt cataatagtt tgttttgata atgtattgtg tgtcgagatg atgagaaaca
      481 gttgctgtca atttgattag ccattatatt tttatgttaa ttgccattat tgggtccatt
      541 ctgtttagtg tcaccataga agccatacaa tgttagcata aataacaaat tggagtaaat
      601 taggaagata tatttttgcc aattcatttt aattgcccct cagtccttcc gtcggttaac
      661 gcagctgttg acccataata agcgctaggt caatatagct gcttgtcaat tcagaaatgc
      721 aaagtgctgt gttgctggta atggatatac aacaaccttt gccagccaac tgaagcaaac
      781 gaatgacaac ccacacgaaa gaataaagca tcagctatgg agtttagtga cctgatatta
      841 gtaggcaggc taattgaaag tcactgctta aatggataaa gaaaatacag aactcaggat
      901 gtaccaacgt atacgtgcac acgcaggcag
//
LOCUS       KCLA01001235            1149 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20154upu ultra-conserved element locus uce-7963,
            sequence.
ACCESSION   KCLA01001235
VERSION     KCLA01001235.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20154upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1149
                     /note="ultra-conserved element locus uce-7963"
BASE COUNT          223 a          360 c          305 g          261 t
ORIGIN      
        1 ctttcaggag gatttgagat tgagcagctc tgtgggaagc atttgggttg ctgctctttg
       61 aagagctggc tcaagcagca gtgccccaca ggaggagaag ctggatggtg ccagggctcc
      121 ccatccagcc caaagtcccc ccaaaagtcg aggaaaagac aagggggaga caggcagcac
      181 agacaggctc ccagctcagc caccagcccc acagccccat ccacttccac ccgctgggcc
      241 accagcttca tggcagtaac caggatacag gagagtcgct tcggaccact ctcttcctga
      301 cccgctttac ttctctctcc ctcccccaac acctttaacc ctccttgaac tactcccccc
      361 cctggcatgt tgccctctgt ctctcccctt cactcccact cacaaaatgt gcttggtgct
      421 gctgtcacct tgcctgggca ccatccctgt gcccctgttt ctcacgcctg cactgttctt
      481 tctgcccctc tctcttctgc aggggctgtt agagcctcta gtattttccc aatcctgagc
      541 gtgattctgc ttttcatggg tggactctgc attgcagcca gcgagttcta caaaacccga
      601 cacaacatca tccttagtgc cggcatcttc ttcgtgtctg caggtaaagg gatgtgcagg
      661 gtctgagacc tgggggatgg gctccaaggc tggaggggct gcccagctgg ggtatcctgc
      721 aagggtgtag tcacctatgc agaagggcat gcggttccca gccctgatga gccttattca
      781 ggagaaaagc agtctcccaa agatgtctcc ctactctgtc tgctcgcctg gcagcagcac
      841 cctggggact tccctgctgc tgaggagctg ctggggggag aggggttttc cacatcccat
      901 gtctcccagg gacctgctga gagtgcggtc cagggatgca gcagagatgt gaggagggtc
      961 tgcctgggtt tctcaagcaa aactgcccac caggagggga cgggtggcag ggagccctcc
     1021 agtccaggag gcaggggctc aaccccacag cccccacctc tgccatgtgt aaccctcctg
     1081 atgtttcctt ctctcttccc cgctggacgg ctggcaggtc tgagtaatat aattgggatc
     1141 attgtatac
//
LOCUS       KCLA01001236            1051 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20170upu ultra-conserved element locus uce-2273,
            sequence.
ACCESSION   KCLA01001236
VERSION     KCLA01001236.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1051
                     /note="ultra-conserved element locus uce-2273"
BASE COUNT          236 a          313 c          303 g          199 t
ORIGIN      
        1 cctctgctcc tcccgcattc acagccctct tctgtagaac cagagtcctc agggccccgg
       61 cgagagattt aattcacttc tctgccacac actgagattc caggtgagag gagcagcagc
      121 cgctaacacc cttcacacct ccaaccacag cagggagcag cacgggccaa acccggcgcg
      181 gccaccgatg taatccttca cacgtaaccc gtgcgaggca acggcacgct ctgcgtccac
      241 gcagctcacg ggggtgggat ccccaagcag ccactacaga ccccttctgc ccccacagcc
      301 agcggctctg cagaggggcg ggcgatgggc actggggggt ttctccagac caggcaaaca
      361 cccgccaacg tttcactcgg cacccagaca gatctcgtct gcagcgagaa cctctttaac
      421 acagcatcgc tggtttggtc cgacatcatc tcctgccgtg tgtggagaca ggccaggagt
      481 atgaaggcta cagagcagag caggaagaaa gtcaactgtg aaattggcaa ttttatgagt
      541 ttcacggggg gttttgttgt cagacacaat gcactgggag cagagtgccc gcggtaatac
      601 catccacaca gcgtccgttt gtcagctgta ggtaacgata tctttaacct agagttgtgc
      661 cgatacgtgc gaaggggttc ggacagcggg gttccaccgg ctcagggtgg agcaagggtc
      721 aggaggtact gctgctgcct ctgtgggtct ggggagccca tcgagaacgg gggcactgct
      781 gcccttgggg agggatggga aaagtcgccc catttcagag tccctttctc ctcaaaaggt
      841 gggccagcag gagccactag ctgctgcccg acgtaccccg gggggttgtg tccagactga
      901 gaagaaggga agcgaagaag acagacagga gggcgaacag cagacagcat tcgtgtcctt
      961 tcgctccttg aagcagagcc aagcggcgct ggccctattt cccagctgga tccatctatt
     1021 tcccccaaag gccatcagct ctctgctcat t
//
LOCUS       KCLA01001237             995 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20185upu ultra-conserved element locus uce-5498,
            sequence.
ACCESSION   KCLA01001237
VERSION     KCLA01001237.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20185upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>995
                     /note="ultra-conserved element locus uce-5498"
BASE COUNT          255 a          263 c          261 g          216 t
ORIGIN      
        1 tggggcaaga actggaggag gcagcagcat ccaccagaaa caaaacggct tcactgaatg
       61 gaatgggagc agccatccgg actctgaccc tggggataaa tgtgctccaa acctgtgtga
      121 gtcctgtagt ggtccttcat ggcagaggct gtgaggaagg agtaatggca gctgggccag
      181 atgcacttga agggcttctc tcccgtgtgc agcttcatgt ggttgttgag tgcccacttc
      241 tcggtgaagc tgcggtcgca caggtgacag gtgaacttcc tggggaggca gagagggaga
      301 attaaaaccc tgcacaggct cccagcgcgc tggggagagc ctttccaacc cgcggcgtgg
      361 caaatgcaca gaccttcgtg aagagaattg cagaccgggt ctgtcatgtc tgtataacca
      421 ggcattgatt tttctgtcga ggcctggcac ttcagccatt tattctctgc tttgcggttg
      481 ggcccaacgg gtttgaaaaa ttctgttaca gtccagtcac ccctgaggca aatgtgagaa
      541 tagatttcac ctgtgcaagc ccacaccact tatccggggc acgggctgtc agagcaaagg
      601 ctaaatgaaa agctatccat actaaactac tcagacaatc gcgccgtgct gccataccgc
      661 tgccgccacg ccgccaacgt gaaatactag ccctaataac actgcaacca tgataaacaa
      721 aaactgcgcc gaaacaaaaa tgctggtttg aaaaggagct gcagacaccg tttcctgata
      781 acgccttctc ctccccagcg ctaccacagg aaacataaag gatcccagtc gtggcaagga
      841 tggagagacc agcgattcat tgcgctgagc tcagcctccc cacttctctg ctctgccaga
      901 taacttcata aaggcatgca aagccagcct aaatctacgg aaaccttgtt ccgtggctgg
      961 gttttcatgc tgtgattttt gttgaagcag acgcc
//
LOCUS       KCLA01001238             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20201upu ultra-conserved element locus uce-6515,
            sequence.
ACCESSION   KCLA01001238
VERSION     KCLA01001238.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20201upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-6515"
BASE COUNT          170 a           91 c          107 g          141 t
ORIGIN      
        1 caaggaaaag caggctgaaa tggtaggcag gttcaatgcc acaggcagat agctttccat
       61 tggagtgctt taatatgctt ttatattgcg tataaagcat gcaaacataa accagttggt
      121 tgaaaactgc cctcttcgtg gaagccggct gtaattctga acaagttttc aattttcaca
      181 ctgctgctag ggtaaaacat tttaaagagt ttaattttta cagtggcttc aatgacatga
      241 gattatctaa caaagtaatg gttaatcgat agagggttta gttgtcaggt gaaacatata
      301 acacactaaa agggattgat tgcaaggctc ctccttattt actgggaggt atatatttaa
      361 aatgacacaa acttgttacc aagctgcatt cctttaacct tgcaaaagcc gtttcagagc
      421 ggtgttaagc agccctatag caaaacgagc tctaatgaaa aaaaacctac acatatatgg
      481 gagcaccaaa tcatgtcaga agcagggga
//
LOCUS       KCLA01001239             939 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20217upu ultra-conserved element locus uce-5919,
            sequence.
ACCESSION   KCLA01001239
VERSION     KCLA01001239.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>939
                     /note="ultra-conserved element locus uce-5919"
BASE COUNT          189 a          231 c          246 g          273 t
ORIGIN      
        1 ctgggtctgt gtccttaacg cctcaggcgg agttccttgc aaactgtgct cgttcccgtg
       61 gccctaaacg cggagggctc ggcggttgcc aattcttggc cgcttcctcg agatcccatt
      121 gccaggaggg tttctcccac ccccagagtg cccgggagag ccatgaaggt tttcctagag
      181 gagcgttggg ttgggaagtc ggccggagag ctcgcggcgc agcccggtat accaagggtt
      241 tggaagtgac ttgagtctga aagcgagatc gtgccagagg cgccggccgg gcggcgccgc
      301 cactttttga tcccaagttt ccttgttttt cctttgatag catttcgctc aataataaac
      361 tcttctctct gttatttgtg tgtgtgattt ttgtagtgga gaaggcaaat gcagagccct
      421 tccagatgac tgaaaaacag tgggtcctct gcagctacag gggattctag acattaacta
      481 aaggccagcg agcactccag tccccaagcc ttttcctggt gtaaccgctt gttaactacg
      541 ttttctcttc ttctttttat ttttacattt tagggtgtta cagtaatttg aaaggcaatg
      601 agcagggttt ttggaactta ccttaaaaac aaagtgctga gaagacacct cttgcagaag
      661 tcttttaaac tcttctagac ttgctttaga agtcactgct tcccattgta ctgtttcttg
      721 atttgcttct gagataacgg attctccccg ctgccttgga ttaaatgcaa tctctgcagg
      781 ttaagtcctt ctagagtgag gtactcactg cgtggcctgg gttcagacct ccaaggagca
      841 ccttgtccgt ggaggcccgg ggcgctctct tatctttgct aagattaagt tctggggcgt
      901 agagtccccc agcgtgacct tagttgcggg cgttgctgc
//
LOCUS       KCLA01001240             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20233upu ultra-conserved element locus uce-548,
            sequence.
ACCESSION   KCLA01001240
VERSION     KCLA01001240.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-548"
BASE COUNT          270 a          202 c          173 g          267 t
ORIGIN      
        1 ccacacccca cgatgcccct cgtttggccg gggctgcgcc agcccttcac tgagcctagt
       61 ggggtcctga cgagctgcca tccctccagc tctcgcccaa cgagaggaga caactttccc
      121 cttctgggtg ccctaacccc actttccact cgcaccccga gggtttggca ccgccagcac
      181 tagcctgtgg ctcagacatc taccggagag caactatata aattgtgatg ctaaaatatg
      241 gaaaacatgt tgtggtgttt gtctttgcag tgaactgagg agaagggaag gcaggaggct
      301 tgggaataac ttttcacagc ttcagctttt gtttacctct aattgtcaag ctgttatttc
      361 tggaaaagat gcaagatgcc accttcaacc aatatttctt ttgggcattt attaattata
      421 accacaaaag catgcatcaa tctatcacaa acttctattg ttccttcttt aagcccacct
      481 taactccatt attggaactt taattaaagc agaaatgaaa caaaaatgtt atgcttcttg
      541 cattttaaaa aagcatactt gtataacggt tacatgtcta aattagctaa attaacacca
      601 tatggtaggc aaagtatata aagcctttta aagctgacag ctaaagtgat taaagaaagt
      661 ctacagtctt ccacttacag cttaaatcac atctgtgcac tttctatgtt aattgcagta
      721 catgcagaag tggataataa agaaattcca ctttattggt tgtaatttat atttattacc
      781 tgatatgaga aaaagtcagc ttttgtatat tagtgctgta acaatatgtc tgctcagaaa
      841 tggcatttag gcaataagca taatagcaag gaatagtatg cccctcagag tacgctgcct
      901 gttactgtag cc
//
LOCUS       KCLA01001241             731 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20249upu ultra-conserved element locus uce-6604,
            sequence.
ACCESSION   KCLA01001241
VERSION     KCLA01001241.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 731)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..731
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20249upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>731
                     /note="ultra-conserved element locus uce-6604"
BASE COUNT          221 a          134 c          143 g          233 t
ORIGIN      
        1 tccttccttc cctccccccc atcccccccc aagcaatata ctgttaaaag ggtaatgcaa
       61 tcacaacctt tatgtcaatg aaaattacat gctgggttta tctctgtagg tatctgtcaa
      121 atgcaaagcg cacacaacat ctttggagta ataatgatgt tttataattt taattacaaa
      181 cactttgaga aaaatcccta aagtgtacca attggggtgg tctgaattaa cagtagcttg
      241 atagcccaag ggtagcaaaa atagattgag ctaccaaatt tcattgtagt tatagcagct
      301 gtcttcttgc ctcagggaac ctgggtattt aacaaagcag acagcttggc attggcatct
      361 gattagcaat gtgggtattg ttggtcagaa tatgtgcagt tctattgtct cactgtttga
      421 ttaggaattt ggagcactat ggcatcattt agcttttata gttagcttcg gtgtgttcac
      481 ttacaggtac tgtaaaaggg tattttctca gttatcactt gctgctatag ggaatattgt
      541 cttcaacatg atcgatgaaa cgtgacagga tttaaatgtc agggtcagtt gcctgcccat
      601 ttgcatgcca aaattttgtt gaaccaaatg cgtaagattt ctaattggag aaaaaaggga
      661 gtaaggtaaa agtcgtctcg ttccttacca cagaatacaa attactttga atttaaaatc
      721 attttaaaac a
//
LOCUS       KCLA01001242             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20264upu ultra-conserved element locus uce-3761,
            sequence.
ACCESSION   KCLA01001242
VERSION     KCLA01001242.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20264upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-3761"
BASE COUNT          169 a          108 c          105 g          175 t
ORIGIN      
        1 aagtcaacat taaacacccc atcagttcta gcaagagtta agacaagcct gtgacaccgg
       61 gaaacacaat gggactctcc ttctgtgcta catatgtaga tgggtactga ggacatgcct
      121 ctctcctcct ctaaaatcat gaatttttat gaagtaagcc ctgctttccc ataattcagt
      181 agggtgcact ttgcagaccc taaagtgctg tcactacaga aggtttcatt gcttgcacct
      241 gctaaaacat ttgaggtatt tgagaggcag tgaaacacat ttgcttttca ttttatctga
      301 ctttgaaaat ctttgaagtg tttaatagta gtccagaaaa gatttctgcc tcttaatcat
      361 ttacttgtag ggcacattct ccactggtag cctgtcaggc agaaaacgag tttagcccag
      421 ttttattaag tgccacatgc cgagtcagtg ttcattaaag gtgttttaag gtttgaatta
      481 tgtaatttat gagaaaaaga aatacaaaat tccattgttt tattaatatg cagcacagga
      541 tatactgcta ataacat
//
LOCUS       KCLA01001243             918 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20280upu ultra-conserved element locus uce-372,
            sequence.
ACCESSION   KCLA01001243
VERSION     KCLA01001243.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>918
                     /note="ultra-conserved element locus uce-372"
BASE COUNT          280 a          180 c          140 g          318 t
ORIGIN      
        1 ttttgctaaa gtaaatgtta caggacaaca gcttaaaaat aaaatccttt ccagtttttg
       61 ctggttttat tttattttat ttgctattgt ttttggccat agctcactca cctggaagac
      121 acaactgcag tttttccacc actgttgtaa tattctgttg ctgcactcta catcggatga
      181 tttcctctgt ttgggctatc accttagagg ttaaagaaaa aaatcacaag taaattatgc
      241 taataaattt gttacaaata ttcataatac tcatctaata aacactgttt tctcacctct
      301 ttcccagcat cctggagcct tcggttggta tcagtaactt ggaccttaaa aataatttca
      361 cctttgttag aaaaatatgc atatattgcc ctgatgtgac tgctcaccct tgtaatcaga
      421 tcatgcttca tgagaaactt agaacaaaga aatgcaaatt caaattaact ctacagcttg
      481 aacttgaact tttgatcgca aatggttttt gttaacttca attacttatg acagttcttt
      541 ctaacagatt ctgtggcaaa cttatcaaat ttacttggga tttttgaact ttccttgttt
      601 ctgcaggtct gtcaaacaat tcaaatcatt gacccaattg accactggtc cctttttgat
      661 aacctcaatg agctctattg gccattcatt gtctgtaaga aatggtgatt gcattttatg
      721 gtaattaaac attcatactt tgctgaatgc aaacactggg tggttgatta acatcaaacg
      781 tggaaatctc caaaccacag caacatttta atgctgcagg tgcaggcaaa gctcgacctc
      841 agattttccc acatagtaag tgactcatta ggtcatcata ataaggaagc acattctagt
      901 ttattaaaaa tctcatta
//
LOCUS       KCLA01001244             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20295upu ultra-conserved element locus uce-2674,
            sequence.
ACCESSION   KCLA01001244
VERSION     KCLA01001244.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20295upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-2674"
BASE COUNT          136 a          101 c           75 g          158 t
ORIGIN      
        1 aaaaggactg aaggcaagtt aggacagtag acttcactca actttcacca tttcttaaaa
       61 aaacaaacca gaaggagtct gtagtgtgta tctttgcatt tacctgatcc ttatctaccc
      121 ccaaaaaaac ctattttatc tgtgcttcat gattacaaag ctttctctca gcttttgtaa
      181 ttcatttgtg ccttctagca gtcatgagtc atgggtcttt tacacttgtc aagaacacct
      241 aatccctacc cttcatggcc cagaaatcct aaagatggct gaaagtgtaa ttgccttgaa
      301 gtgtaaaata tttcccacat tatttattat aacattgcct gctagcacct ctatagttaa
      361 ggttgtgtca gcattttcat tataagctcc tagtttcagc tgtaaaactg tgcttcaggc
      421 tggaactggg aatgcaagtg attcattatc tatctatcta tctatctatc
//
LOCUS       KCLA01001245             937 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20311upu ultra-conserved element locus uce-7028,
            sequence.
ACCESSION   KCLA01001245
VERSION     KCLA01001245.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20311upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>937
                     /note="ultra-conserved element locus uce-7028"
BASE COUNT          303 a          173 c          174 g          287 t
ORIGIN      
        1 ttcagaagcc cgtataacag ttaacagtaa tgacaaatag atatagaaaa taagcaacaa
       61 tcctcactgc agtgaacttt gcaatttaac acttttttta tatttaatta attcagaaag
      121 tgaagaactt caaaactggc tttgaacagg ctgtttgtta aaaaaaatag aacatttatg
      181 ttttcactct tgttttttca aatgtgatgt gacaaagtga aaaagctgca tgaaagtgtg
      241 gttctttgtg tgatggaagt gggatgcacc tactagtctc acatcatcaa agaaacagac
      301 atatatctat aatttatgct ttgctttaag cttccgctga tccgatgtgg cttttgcaga
      361 caacacaggc agccctggca cagcctgtca atcatctggg catgctcaaa ttgtagacca
      421 ttagtaggag agacagcaaa gtttctttaa tgacgctttt atatgtggtg tgttggcagt
      481 gaaacagaga agaattgact tgatcaatgc attagtctaa tcatggggtt cctgctctta
      541 atttcttttg tcggtaattt ccatactcaa gcagcattca ggatacttgt aaagacacac
      601 ttagagcact gcatgatgta tgcagtcacc tataaagcat gtcttggata cagctctgta
      661 ggaaacaagg aagaaggata gggggccagt ccgatttttc tttgagctac ttttcacgtt
      721 gtgagaatta cagaacctta gtcaaaaaga ggatatttcc ttcttttata tattatgccc
      781 ctccccaaaa ggccatatct tccaaaacca gaaaaaaagc acagcagatg ccagcatgtt
      841 tgatgctcac atactgcaaa acattgtttc tcaagtataa aattatttct attcatctat
      901 tcttaatata cagaaacagg gtctgaacaa cttacac
//
LOCUS       KCLA01001246             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20327upu ultra-conserved element locus uce-4519,
            sequence.
ACCESSION   KCLA01001246
VERSION     KCLA01001246.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20327upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-4519"
BASE COUNT          208 a          126 c          148 g          232 t
ORIGIN      
        1 caactatgat caaattgaat taaatgaacc tgcctgtaag aaaagagact gaatagctgc
       61 atagtgcatt attcaatgaa tggaaaacgg gcaggctggc tcaaacggct gggaagtggt
      121 ttaatattct gtcggctaaa gagcaattct gtgaaatcac tgtatttgtt tcccccctgt
      181 ctccccgccc tcaattttta aatagcagtg ctcttcatac tgtcagaact cagtgttgtg
      241 acacccctac tcaaaagtta tgacagcagt gtaatgacag ctactgcctc ttgagaatca
      301 atcaggcaat taattttgta aatgaaatgc tgattataca aagcttcaca tgagaggccc
      361 agtgattaaa atcaatttaa caaattgttt caggtgggac ttgattaata atttgccata
      421 aatgctgaga atatatgacc agcatacctt cgtgtgtgtg ttttaatcta gaactatata
      481 taacgctaag agtggaaaaa atctgtagtt aactggtggt acttctggct ggtgacctgg
      541 atgtgattgg ttgttccttt tgtgagtgct gtgtgcttcc cactgtcagt aatgctgctc
      601 tctccagcag ctaaatacat agtacttttt ctgttatgtt tgctaataaa gtgaagtaac
      661 tgagaaagtg tcttcagatc tgcttgacta tttaggtttt ggattagatt tatt
//
LOCUS       KCLA01001247             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20343upu ultra-conserved element locus uce-97,
            sequence.
ACCESSION   KCLA01001247
VERSION     KCLA01001247.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20343upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-97"
BASE COUNT          278 a          176 c          204 g          265 t
ORIGIN      
        1 caaaacacaa gtgacgctat tcaggatctc ataagcggta ggtcagggaa taaggtgtta
       61 ggactcctaa agtttagcag gagggagctg cttgtcccct ggctataggc tgcctgcggt
      121 actgcaggac taattgccgc acattcctca gccgtggcgt cactggatca tgatgctaac
      181 tctttccctc ctatggatgg ggggaacttg tggtgtgtct ccgagacacc caaaaatgaa
      241 tgtgctgacc ctttaaacaa aattatttta ccatatacct agcagagcca aactaaatga
      301 agctgaggtc tctgtccagc atttggaagc cagttaaaat aggaaatcag tgtttctcta
      361 aatacacaga gtatattacc ttagtcataa aattggggac tttcaaatct aatttgttca
      421 gcactagcgc tgttgaaggc tgggaagtgt tccagaggaa atcacctcca cgcaaacaga
      481 gattagcagc tccccattgc agacatatgg aaatgattgc ctataatctc cggtaattgt
      541 ggctgtatta cattcaaatc ctgttttcaa ttttcttaaa cttctagact gattgtgtta
      601 ttaaatcatg ctggctgatg tgtttaataa ggacctatta aatgtttata aaattaggga
      661 aataaatacg ggcttttagt cagattgtgt gatggatctg gtaacctatt gttaaaagta
      721 ttgctggtaa aaacgtgtct aaaaagtaga cttaaaggct ccttttcaaa caagaaaccc
      781 aacacttgat acagactatt tctaaaattg tattcacaga tgttcagaga gaaaacagga
      841 ttttgattag aaagtcctca ctgagctggg ggaagcagca cttcctctgc agggtgatgg
      901 gtcccagttt tggaaaagct gag
//
LOCUS       KCLA01001248             358 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20358upu ultra-conserved element locus uce-177,
            sequence.
ACCESSION   KCLA01001248
VERSION     KCLA01001248.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 358)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..358
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20358upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>358
                     /note="ultra-conserved element locus uce-177"
BASE COUNT          116 a           67 c           57 g          118 t
ORIGIN      
        1 aggttatgtt ttcgcacagc ttttatttag gaaaaatcag tagaaaatgc atatttctat
       61 attttccatg tattacaagt ctcctttcat ccaagaaata tgagacctga aataaattgt
      121 accatcctgc tttttttttt attcaaatcc ttgccagtgc taggcagtat gctaatgaaa
      181 acaggttgat aaatgactcc ctgatatttt ccagacattt ttctctcaga agtgctctaa
      241 actgatgtag ctcaaagaga ataaggcgca ttaagtcatt atatcaattt ttgttaccca
      301 gatacttcag tcccagttaa gagctgacag ccaatataaa acaaggcaag ggcatcat
//
LOCUS       KCLA01001249             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20373upu ultra-conserved element locus uce-2315,
            sequence.
ACCESSION   KCLA01001249
VERSION     KCLA01001249.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20373upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-2315"
BASE COUNT          175 a          149 c          176 g          195 t
ORIGIN      
        1 ctggctgcgc gcgggaaggg gaacttgtca atggaagaaa aagaactgta atcgcacatt
       61 tacatatgct cctaattgtt gatttgggga ttttctatga atatggcttc acaaaacaga
      121 tgctgtttaa gaaaaggggg aacataattt tgtgggcaat gaattaagtg tttttgtggc
      181 cctctcatcc gtagctagga gcagtttgtg gaccgcgtct gtgaacgccg ctcataattg
      241 tttttcacac ataagttatg caaatgagct tttatggcaa ctggcataac aattagcatc
      301 ctccagcaat attttagcag gttaattgca aaatttctaa attgtacatc tgacttgtta
      361 attaggcatg acagaggtgg taaaatagtt atcttcaggc agtggcagcc aggagctgct
      421 tgaaatgcaa agagcaacga ttgattggat ttgagggtta caattgtggg agcactgctg
      481 ttgtcaagtg ccgctgagca gctctgctcc accggctgcc tcagagcaag aaccacgtcg
      541 ttgctgagag gatcctgcca tttacaaatc tgctttattt aactctgaaa ctctccagct
      601 cccgtcggtg ggaagtgccc ggctcctgcc tcttcctccg ctgggcccgc acgcacgggc
      661 agagcgtgga cctgcggtgg gcattctgcc tttat
//
LOCUS       KCLA01001250             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20388upu ultra-conserved element locus uce-1603,
            sequence.
ACCESSION   KCLA01001250
VERSION     KCLA01001250.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20388upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-1603"
BASE COUNT          156 a           77 c          123 g          150 t
ORIGIN      
        1 ggaaattaga gaccgtcgag aaaatccaat ttggtgagga gttttaaaaa tcccataata
       61 aacgcagagt gaaatgtatg atttaatgcg gggcgccaat ggctgctatt atgtgctatt
      121 agcaaatcgg ggttgagagt gaatctttat cacttggtga gtgcgggcta ggcctgcctt
      181 tgcttctgct attgatttgt agccgcttgt cataatgaca tcgggaagca atgaatggaa
      241 gatgtgcttt tgataggatt gaaggggtgc aaagggggga gaaaaaattc agcaagtttt
      301 ctatctcttc tgcctgatta gatttttttc ttcttttaag agctttcaca ttccaataaa
      361 aatgctaaat cagctctgaa gcagaattgt tagggagtaa atagctagtc acatttaaag
      421 gaggaaaaga tctgacttta cagctctgac tttacagcag tggatgaatc taaagaataa
      481 ttctggctcc acaaaaagga tagtag
//
LOCUS       KCLA01001251             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20403upu ultra-conserved element locus uce-1531,
            sequence.
ACCESSION   KCLA01001251
VERSION     KCLA01001251.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-1531"
BASE COUNT          128 a          100 c           95 g          138 t
ORIGIN      
        1 aaagatcgct tcataaagcg tagtccctaa agggacaaac tccctgctcc tgactggatg
       61 tcagtcagag ggatcagcac ccctagggat ctggagtctt tgcttgccct tttcattact
      121 gtgttgttag cattgtgtta cttcatattc tactgcatgc aaatgagtag gtaatcatgt
      181 gtaaatcgtg ccctccagaa ggcacatgtg gtgagttttc ccccccaaat ctaccacagg
      241 gatttctcac gtggaacata attacatctc tgccatatgg gctaatttat attctattac
      301 aggttaagct aatacggctc tgaaagatgc taaaaatacc tcaaagaatt caggcactgt
      361 caaaacactt gtcattccgt gtctgtttga ttgccagtga cttcatgttt agttagaatc
      421 atagactcat aggatcttta gggataggaa gggacctcaa a
//
LOCUS       KCLA01001252             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20419upu ultra-conserved element locus uce-5530,
            sequence.
ACCESSION   KCLA01001252
VERSION     KCLA01001252.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20419upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-5530"
BASE COUNT          220 a          116 c          147 g          200 t
ORIGIN      
        1 gcaaagctca ggtgtaattt tcatagttct cactgctatt aggaggttcc tgagtcaaca
       61 tatcatggac agcctgggaa aggaagggga agggtgaatg cagaactctg tgctctttag
      121 acgacaacat gtcgatggag ctgtggaaat gaggcctcga agtttgtaag aagcaaaaac
      181 ttgggcattt tgtgaacaat agaggtgttc atagcagttt cttccaaact gcatggcact
      241 tttcagctag gattgtgtgc agtttatgtc aaaacatttc agtgaagaaa tacaaataca
      301 gactaatgtt tgacttcttt tgttgtgttg aaccagagcc agagaaagta tttatatata
      361 aatccacttg tgaaatgcat aaccctctca atgtgactga ggcttacaga gaattcaagc
      421 tgattgacag aaaatactgc tcttacagtg tcagaatgta ttatagtgct tatagagaaa
      481 cacgaaaaat cccttttttc accagtggac gtgttcattg tcattatgtt ctggcatacc
      541 ggagatattc aggtactgaa ctacccaatt tgctaggacc taaagctacc atgaaaatat
      601 attaagcaac cagatggata attcagcttg ttgctttaaa aaagtgtgca ttaaacattc
      661 aggatttgaa gcctgatata aaa
//
LOCUS       KCLA01001253             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20434upu ultra-conserved element locus uce-6973,
            sequence.
ACCESSION   KCLA01001253
VERSION     KCLA01001253.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-6973"
BASE COUNT          195 a          124 c          103 g          186 t
ORIGIN      
        1 aaaaagaaaa aaaagaagaa acagaaaagc taatctcttg tcaatttgac ccaccacttt
       61 tctgcattat tgatgtatct gtaatttcca tctgcccttt cttcagcatg tatatttata
      121 tatgtggggt ttttttcccc acaatcctgc agtgcagtgc aaagctagat ttaaatattt
      181 tcagactgac tgtacccatc atttgcattc cactgactca ttcacagcaa agacatctga
      241 gcagaaatac agcagataaa agagaaacca ttaatccagg gaagattact ggcacagaat
      301 ctttatcctg tatcctccct gaaatgagac aaagatctta ctatgtacat ccctctggct
      361 tagctttaga aagtaagcag tacagtagtg tagacatggt gctttttaaa ggcacattac
      421 attgaactga aacttcaacc ttctgacaga gcttattacc actgaggtgt tttgtggtgc
      481 tagctttctt agaagattct tcagcacccc aaaacttttt ggttcatgta atgaccaaga
      541 caaataatct aattctagga agacagtata tatctcctag agattggaga ctctcctgta
      601 atgcattg
//
LOCUS       KCLA01001254             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20449upu ultra-conserved element locus uce-3831,
            sequence.
ACCESSION   KCLA01001254
VERSION     KCLA01001254.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-3831"
BASE COUNT          196 a          100 c          124 g          190 t
ORIGIN      
        1 agggaactga atgcctgtcc caagtattca tgatataatg tagtttaatt gcactccaga
       61 aaaatatgcc atgaacacac tgataagagg gatagatcag gattgtaaca aatcacttcc
      121 aaggttttgt agtgccttgt tttgtcgttt gaaatatgaa atattaggat ccccaagtca
      181 agctcatatc tcgttgacat ctttgtcttt taaataaaaa gtaaggtggg aggggaaaaa
      241 gttagttaaa gtgaacaact tctaaagtgc ttaaaccagt taatagtacc agatcctttt
      301 agattctggg aatgaaaaag gaaaaaaaaa atcagactta catccctggc tgggtgtttt
      361 ccactataga ccctacatgt ttatgtagag ggtattgcga acgtttggag ggatttggga
      421 gtttcaaaag gaagaagttt atacattagt gctgcaagtt gcaaaacact gttgatattc
      481 aaatgtttat tgtgtaaaat ctgggataag cttcagcatg agagctcctt taagtgccta
      541 caactattgc taattcccct cagcattgag gcttgcacaa aggccttaat ccaattccac
      601 tttttttttt
//
LOCUS       KCLA01001255             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20464upu ultra-conserved element locus uce-1633,
            sequence.
ACCESSION   KCLA01001255
VERSION     KCLA01001255.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20464upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-1633"
BASE COUNT          209 a          148 c          109 g          254 t
ORIGIN      
        1 aataatatgc aatgacagca taatcatatg ctaacattta atcacctttt atatataata
       61 ttaccctgat tcttctttaa atttttatgt tgtatattgc tgtacatttt tcttgctgat
      121 tgattctctt tattactact gattttattt atgctgctaa ttttttttcc taagcatata
      181 ttttaatgag tagttttgtt cagctaacgt ctacagcata agagaattca gcacacctgc
      241 ctaaataaga tgcttgagat cactgaggaa agaaattgac attttacttt accctcagca
      301 tggagccagg ggcaaagttt gatctgaaaa cttgcaaatt aaccaaaact gtcactcagg
      361 agttatgggc ctgaatgctg caaaatatgt tctttgaagt cctcatttca gcaaaattat
      421 taaaaacttt atatctaatt aaaattgtaa ctgcattccc atttttcaaa atctctatat
      481 cctcagggcc aattgggatg agtgaattcg caccctcctc tctgcagcac actgcactgc
      541 tcctacagca atatcagatc attaccatct ccccagctga gagggagcag ccattatcat
      601 gcagcattat taatcttctt gtcttatcaa cttgcaaatc acaagccatt gagccttatg
      661 gcatggttct gggtccatag ttattcattt tgtaggtcta cctagccttt gagtctcctt
//
LOCUS       KCLA01001256             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20480upu ultra-conserved element locus uce-3465,
            sequence.
ACCESSION   KCLA01001256
VERSION     KCLA01001256.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20480upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-3465"
BASE COUNT          226 a          168 c          141 g          188 t
ORIGIN      
        1 tgttcagctc cacgttaaga agcattaatg agaatagctt gcagttcagt ttacttagct
       61 ctttaaataa acatgggcta ttggaaatgt tatacaacaa cgcaagcacc gtaagtgcag
      121 ctccaactcc tgtcattccc gcagatgagt tacaaatcta caagaacttg tctgctccat
      181 gcttgcagcc accgctaaac ttaaattagt aactctgtag gcctcttcca aggcatatca
      241 gagaccagct gtgcaaggac ctgtcacctt cttgtcaggg aaagttttct gtccaaagaa
      301 ctttcgtcat cccccattcc tcaagtagct ggatgtcact tgaagagaca gctgaagtca
      361 cttgcaatga atggtctcaa atcagagctc actgcccttg tcacagaaag tctcaccccg
      421 cagctaaaac tgtcactgat catgtttaga tatgtacgct gaggtatcag attagaaaag
      481 agtatgcacg agatgggagt ttaaaagagg ccaagttgca aggaaaatct taatagggag
      541 aaccgagggc ttgaagggtt agcccttttc caaacccaat ttatatttcc catcaaatcc
      601 aataaaaaat ctctagcttc tcaaaccggc atatttccaa ccaacatatt caagaagagg
      661 ctgaaacttt aagtactttg gccagagagc acatagattg ctaatatggc acctctgcag
      721 caa
//
LOCUS       KCLA01001257             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20495upu ultra-conserved element locus uce-4133,
            sequence.
ACCESSION   KCLA01001257
VERSION     KCLA01001257.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20495upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-4133"
BASE COUNT          188 a          228 c          180 g          267 t
ORIGIN      
        1 actgtggctt ttcgcctttg ctcctcctga tctgcctatc attgagttat tagacacgca
       61 caatcctggc ttgtccgtga gctggaccca cacaccccaa atctgcatga gcagcctctg
      121 accctgtaat tatctcctgc agggcaaaac aattaggagg ttttgctgtc ctctctatcc
      181 cttccccctt cttcattgtt cttggcaaaa aaggttaatt aaactcagaa aatatccatt
      241 ttccccccac tctgaagcat gagactgtta atgttctctt tatatttgta tttaattaat
      301 tcctgcgaag gatctgacta tattttttgg tataattttg tcctttgtct ctctctctca
      361 ttgttaatcc ttgcatattc agttttcccc ctcccttttc ccctagattt gaaattctat
      421 taccatttca gaaggcaggc gtttgaagag aaaattgaat accggtccag ccttgataag
      481 aagggacatt tggtactaac ggtaatttgt gaagcagatt ttccccccac ccagaggttg
      541 gtatactctt tgctctccac actcatggtg gaggaatgtc acagcgtcac aaaggacttt
      601 tgcagctgct ctgttgctgc attggttcca ctgccctggc agctatgcgt ggggatgggg
      661 agacagtgtc atgctgtgcc tgacaccttc cttcatacag gtggagctgg ccctgcaccc
      721 tccacttggc tcgttttgca cagagatgat gccctgcttt gttgcatcat ttttggaggc
      781 agctaggcag tgcccacagg gtacccactg ttgtagggga gagctcatcc cagcgacccc
      841 catgccagcc ccacaatgct gag
//
LOCUS       KCLA01001258             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20510upu ultra-conserved element locus uce-5804,
            sequence.
ACCESSION   KCLA01001258
VERSION     KCLA01001258.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20510upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-5804"
BASE COUNT          283 a          187 c          179 g          299 t
ORIGIN      
        1 atggtcttcc caagtctgac attgacagca tctgaccacg gagagcttct ccctcagtct
       61 ttttacactt ttttaaggtg aaagagttag ttcaggtttt caatggaaag gaaataatgg
      121 aagaactggg aaccttcctg attataaact agccactgat gtattggaga ctaactgtat
      181 tatttttcct cagtttttgt ttttcccaag agataatatt ctgacaccca tctgagagca
      241 ctgctgtgct caagggagat ttttcagaaa accagacttc agtcatttcc ccagtaagaa
      301 gaaatggtag tggctgcaaa ggtatcaata tttcatcggg tctttgttca gcactggttt
      361 tagcttttct taatggtaca ctttaccagg cagctttttc atacatcatt aaacagcagc
      421 tatagaaatc gtgccctgtt tctgatttac cgtagatagt aatgtttaag atcacattaa
      481 acaccgcaca tgctctcagc tatttgagca acatcagagt aatgaacagt caatagtttt
      541 agtaaattag gaccctttgg agctctcgtt actgaatcaa ataagtatcc ctggtcctct
      601 ggtgaaggca attctaatgt gaaataatga atttagtgtc taatcaaaac ttagggattc
      661 cttttccctt ctgacttgca agagtaaatt atataaatta tgtagaatag atctaatact
      721 tccagcaccc aagtcctgca agacactgct gaataaattc tacaaggtcc agctgcacgc
      781 taataaactc tatgagggag atgaagataa aagagttgct ctggagttac aggcattcag
      841 acaaggaaag aggatttgag ttctctttct agttctgcca tagacttcag acataccaac
      901 acagaagtta tttgtacctc tgcctcctct gtgccatttt ttatggta
//
LOCUS       KCLA01001259             913 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20526upu ultra-conserved element locus uce-7729,
            sequence.
ACCESSION   KCLA01001259
VERSION     KCLA01001259.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20526upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>913
                     /note="ultra-conserved element locus uce-7729"
BASE COUNT          259 a          177 c          211 g          266 t
ORIGIN      
        1 gatcagggca gtgaccctgt ctctgcaagt gtccagagat gcagataagc acagctgtgt
       61 ctttgtagtt ctgattttgt gatgtcagtg cagctgctgc catgggctcc ccctctgaaa
      121 acccccagct ctgactcagg ctcttctgga gtggtctggt tttgatttta tcactggtag
      181 gacatgaatg agggggtgga ggggataggt gttagaagga aaattctgga aacattcaca
      241 ccctgtgtat tgttgggtta ttagagctat tcgtcttttt ttattctgga cagggtggag
      301 aaatcttttc ttctttccct tctttgcctg caatgtctgt gctgcaagag cagcctgacc
      361 actatcccca gttgtcttgc atgattaatt acagcatctg tcctgtcaga agctataatg
      421 aagaggtctt gataaaaatt gcaaattacc actggcaaca atcttaaact gcttatgata
      481 aaatgaaaat taaaaacagc aagtgtcaaa cctgagcaga atcctaatcc tgtttgaggc
      541 cgtgtccatg gctaccatgc tcagaccgca accaaaaaag aatggaatat agatccccaa
      601 aaagttgcag ccagacttga gggaagaggc actacaccat gtgagtttat taataatgca
      661 tccagctttc gatatttcac catcctcagg tactgagttt attatggaca aatattgagc
      721 tgagaaagat tcaaataata aatgtataga tttcttggag cacaaaaagt cctgtataaa
      781 ttgaagcttt tcataatagg tgttacttga caggtacttg tgctcctaaa agccgtagta
      841 tggtatctga caatgcctgg gatggaggat gtttactcca agcatgagga aggctgcatt
      901 ggaaatggac tgg
//
LOCUS       KCLA01001260             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20542upu ultra-conserved element locus uce-6473,
            sequence.
ACCESSION   KCLA01001260
VERSION     KCLA01001260.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20542upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-6473"
BASE COUNT          225 a          153 c          127 g          222 t
ORIGIN      
        1 tagggacacg gagtaggaag ctgtagaaca agttacaagg agcctcttct cacttggggg
       61 acataagctt gtttgaggca tggagccaaa cactgaaaac ccctttcctc gaggcacccc
      121 cttgttttga ttttcttggg tttcccttta acataataaa ccatatattg atactgcaga
      181 ccactgtgtg aatctcctcc aaacccggcg ctttcaataa cacccttagc cagttcttta
      241 aaaggatttt ccaaagcttt cagccgtaga cttttgtctt gttgaatgaa cttcagctac
      301 actaaatttt aagtaaattt gtgatgactg agcaatatac attggctgag ccagaatcca
      361 ataacccaca ggacaaatta attttcaaca aaaagggcag aaacctcaag tgccatgagt
      421 atatggaatc tcgctctatc tctctggagc catttttgca aatcactaca gctattcata
      481 atctaaatca gtctccttta gcagcagaaa gatctttttt catgacaaaa cagaagatga
      541 cattcattag tgcctaactt gcataagcta ccttaaattt attggagctc ttacacttag
      601 ccggctaaga attcctttgt ctacagcgat aggaaaattc cggatgtact acttaaaaat
      661 ataaattgtc acttttatca gaacttttgg cagtttactt tattttagaa gtaaaactgg
      721 tggttaa
//
LOCUS       KCLA01001261             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20558upu ultra-conserved element locus uce-4404,
            sequence.
ACCESSION   KCLA01001261
VERSION     KCLA01001261.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20558upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-4404"
BASE COUNT          143 a          129 c          115 g          153 t
ORIGIN      
        1 agctctcagc cctgggtgcc ctggggaagg ggcgaagcag cccagagctg gtcccctggg
       61 gactgaagcc tttcagcccc ccttgttctg caagtggccc cttcccagct ccttctccta
      121 atttactgat ggttcctttt ttcttacaaa gagaattaga aaggagagat aaaacacctt
      181 tgaaagccgg gttattcctg cgctttaaca ccttccaaca gatgttgttc ttacccaaag
      241 cagagatcct tgaattatta atggtttcca acagctccgc ttgaaataat ttagcatttg
      301 aaagagagga gtcactctcg ttattccgag tgcagaaaca ttttggttat taacagtttt
      361 ctccttaaaa actaaaatga gcccgacaat ttgcgccttt ctctccagat gccagcagga
      421 gcaccagatc cagggagcct ttgtgcttgc tgaaggttaa ttgataaaat acaatggaag
      481 agagaagact acatcttctc tttaaaaccg aggagctctt atctgatctt ttggtagcct
//
LOCUS       KCLA01001262             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20573upu ultra-conserved element locus uce-1367,
            sequence.
ACCESSION   KCLA01001262
VERSION     KCLA01001262.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20573upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-1367"
BASE COUNT          263 a          185 c          146 g          265 t
ORIGIN      
        1 gctagatatt tcctgttaaa atgaagcatc atggtcaatt gtcatgtgat aaattactgt
       61 tttcattcat cctctattaa aggtgcttac aactgacctt gagcaccact tatgttccta
      121 cagacatggc ccttttttaa gtcagcaggg tacagccgga acaaattcag ccaagcaacc
      181 agattcattc ctgcttgtaa aagttgagcc tttcaagagc atcttgtctc atgcagtaca
      241 atgggcttga ctgctcttga gaaaggtgtc tagcacctga ctgttcctac caaagagtat
      301 tacctgctca cattgatttg cagcaaagta ttcctcagta tttccactta acatatactc
      361 taagggaacc tgtgtagtgg gagatattta cgagttgctt tcagcttaaa aataaatcac
      421 ctctaattcc tctaagcaaa atcaatcaaa agtctgtaaa aaatggactg gttgtttggt
      481 cgattctggc agaaaagtaa acagcacttc agcttttccc caccattaag gtctaaatgg
      541 cctagaaagt aaatcaatat ctccagtcag ccttctggct attgtttagc cagtagatat
      601 ggattttctc tagcttactg cactcctttg agactaacct gtaatcctca gagagtaata
      661 atatgttcgt tatctagttc agctctctgt tgtacattta aatggaccac atccatcagc
      721 agcacttgtt aaagttaaag gacaatgaca tcccattaca cctatttcac tgaaatactt
      781 gcaacacctg atggagaaaa ttattataaa acccgtattt gcttccaggc tattaaaaac
      841 aaagtacctc atataaggt
//
LOCUS       KCLA01001263            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20589upu ultra-conserved element locus uce-6553,
            sequence.
ACCESSION   KCLA01001263
VERSION     KCLA01001263.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20589upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-6553"
BASE COUNT          309 a          202 c          225 g          323 t
ORIGIN      
        1 tttaaacgtt tacagtttca gaaagtttcc aacgtggcat caccacaaag cccttaaaag
       61 aattccacat ctagatgcat ctaagtagaa cattgatcct tcataaaaaa aaaaaattat
      121 ttttctaatt atgtgtcaat ttaaactgtg aaactcttgc aaaactcctt gagtttgcca
      181 gttgtttctt taaatatgct taatcaagga agacggggtt tgccagtgtc agcaagatgt
      241 gccttcaaac tgttttggtt tgattgcatt gcattataga atgcttcatt actggtttaa
      301 cctctccaag gttttcagct gctgttttat ttagccatac cgactacagt gcctgcagca
      361 actccaggca atgattcccc tagtggcatg catgagctgc cctgctctgc tgcaaaaata
      421 cattagggtt gaatttgccc tcagagtttg gaaagatcta aagtctttgg ggactaaaaa
      481 tgtggttttt tctttgtttt agctggcagt atgagcctct ggcattttaa agtgcaagtc
      541 attagcgtcc acaagggtga cgttaatatg tctgtgtttc aatctcagga cattttccag
      601 ttgcttctgc cacaacaatc tctgccatct cagtgctttt taagcccctt gtgaattcaa
      661 gtaagctttg caatgccagt aagaatcact gtagactttg gctgaaacca gttgctaccc
      721 aatttattct ttttgcagga ggctgaaagt cactcagagc tacttgatgg gggtgggagc
      781 gaagagattg agggatgtag tgttcagaag ccctaaatgc aatcagaaga aaagctagaa
      841 aggtttggac agccttatct ttttattatt tgtattagct atggtttgga cttgcagtca
      901 gttgcatgta caacagggat aacatcgcat ccgcaaataa aagcaaacta aaggatcaat
      961 tgaagcagtg agagcatagc ctgagggacc acatgacagt cctcattgac aagaaggatg
     1021 gaaactgtca acaaaggtaa tgccttgtgg gaaatgtaa
//
LOCUS       KCLA01001264             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20604upu ultra-conserved element locus uce-4883,
            sequence.
ACCESSION   KCLA01001264
VERSION     KCLA01001264.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-4883"
BASE COUNT          286 a          209 c          158 g          249 t
ORIGIN      
        1 tacttgaaga gctgaaagca atcccacgtg ctcttagatc cacactgtca cagacagctg
       61 cctttaaatc aaggtttaaa acatcttgtt accttagttt taacatccag agtttgaggt
      121 ccagttgcaa gtgtttacca tagaaaactc ggtcaagctg gtgtttgacc tttgacacgg
      181 ggctgccctc actccagcta gtcccaacaa actaggccca agacaataag ctgctttata
      241 gccattagct gggccagtat gtttctccag gaagacctca agctgaaaag ccaacacgct
      301 tgacaaccac agccaaggta ccaagggccc aagcactaga cattagaaaa caaatggaaa
      361 agcacacatg gctacatctg gaatcctaat gggccaccaa tggttcccag ctaaaggaag
      421 aattaccaat gttattttat catcccttgt gctaacttag ctgtttatgt acagcaataa
      481 atgatttttt aaaaacatat ttgggtcatt atgtcatata ccaccagcaa gtacgattgt
      541 ttattgtgct tggagtcaaa atacgcagct atacccagat gtgagggaag ttcaaaacct
      601 ctagtcctcc tgtattcatt cctgttggac aaatggatta agtttttaaa agggaaacgg
      661 agaattttta tggcctgtac tcccatctca ccagtaaaat ttgcactggt attttcctac
      721 agaagtctgc cctgccaatg ataacattaa atattaactt agtaagcagc ccaacatttt
      781 taccaacagg aaatgccaca cattttattg ccaaagatcc ccattttctt ccacagccac
      841 actattttac acccaagaaa gaattgtata cgttttacct gaacacctat tgaaattcaa
      901 ag
//
LOCUS       KCLA01001265             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20619upu ultra-conserved element locus uce-7397,
            sequence.
ACCESSION   KCLA01001265
VERSION     KCLA01001265.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20619upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-7397"
BASE COUNT          227 a          203 c          151 g          196 t
ORIGIN      
        1 gctggatgtt caaagctata catgtaatgt gcctgcaaca agcacgtatc ctgtgcttcc
       61 actttccaag aaaactggga tctgctactt ggtaggtctt ttccatctgc agcttttatg
      121 accctgctga gggaccagca agcagtgtcc cccttttctc actcaagaaa tacactacca
      181 agtgccagaa gaaagagtga gtttaagagc tgttgggttt aggagtggtt tgtgctgatc
      241 atactagaat ctttctgcag aggcatacat gcaaagagga aaaaacaaca accgctaagt
      301 aaccacttca catatgccat taggattatt aaactcctta caagcagtat ctaccccacc
      361 ttccccacta cacacaaaca tatacacacc cccaagctct gcaacatggc aactaggagc
      421 caagacggca atccttgccc cactgcagca accacattca ttcctgttaa ggggttaacg
      481 attcgtttcc actacttctc tcgagaaaac ctacaatgaa aacattggct cacgaaagcg
      541 ttctcactgc cagaatgcca cagcgcgagt gaaaagtccg ttttgttttc attacatctc
      601 tgggatttcc ggcttaactc ctgagcttag acaccaaatc cctagatacc ccacccaccc
      661 acttttcctt ttttttttaa taacatttct gcagcacagc ccaccaatta ccatttggag
      721 ggtgggaggg aagggggaga aggaaccatg tgaaaaagat gctgtcatca gagcaag
//
LOCUS       KCLA01001266             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20635upu ultra-conserved element locus uce-4304,
            sequence.
ACCESSION   KCLA01001266
VERSION     KCLA01001266.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20635upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-4304"
BASE COUNT          209 a          146 c          160 g          246 t
ORIGIN      
        1 tgcttctgtt cactaggaga aaagagcatc tgtgggaatg tctttgttat tagtagtgtt
       61 tcagaagccg ttttcagagt ccagctgtaa attgaatata agcacttgcc aaatgtgagg
      121 ggagtggttt ccactttggt ctttgtgttt attgtttctg cattggcaac agaactgaat
      181 tcatagcagc agcaaaacaa agacagctct gagttatact gtaattcact gctggagatt
      241 tatgaatatt attttcctgt aaaatccagc atttttcgct ttactactcg taacctgtaa
      301 gcagcataaa gctgtgtacg ccgcaggatt tcctattgca gtgagcgcca aatgctggtg
      361 tcagacttgc tctacgcgca cgtgtggtta tgcagtgtgc ataaattgtg cctttatgtt
      421 taacttgtct aatcagctca ccatatcaaa acttaataag tagctgcttc tcatttaaag
      481 gtctagtaaa actgcaatta ctatggctgt aagatgcctt gtttcgagaa gagcattaaa
      541 tagttttata gatatggtta gaagcacttg tgtagttgtt tttatgaaag tgaatgagtt
      601 cattaataat gggagtcaca gacagaaatg taagttggga gttgaagtgt tctgcctttg
      661 catcccttcc ttacaggtta tccctaaagt gcaaactgct tccacccact cacagaagcc
      721 ccagcatgcc tgtaagccac ctttcctctc agcaattgaa c
//
LOCUS       KCLA01001267            1194 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20650upu ultra-conserved element locus uce-172,
            sequence.
ACCESSION   KCLA01001267
VERSION     KCLA01001267.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1194)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20650upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1194
                     /note="ultra-conserved element locus uce-172"
BASE COUNT          313 a          216 c          215 g          450 t
ORIGIN      
        1 tgttcagggt aagttatttt tgcaggtctt gtgattttat tattttgacc catttccagt
       61 tcatattgca tcataaaacc atatttttgc taatattatt ctagtgtgtt ccaaagttat
      121 ttgcatttgg atagaaattc attagctctt gatttttatt ataatgaatc attttaactt
      181 ttctgtggta atgcattctc tgtgtttctg atttgctgat gttgaaatat tttattttca
      241 ttttaacctt tccaaattta ggatcggttt tgcttttttt ctgtgtatat atttctgttg
      301 tttagaccta ctggttcctg cttttttact ttttcatatt atgttatgtt tgtaacttct
      361 gactgtctgt gttgagccaa tcttaccgac aaaaatatca gttgtttcct gtttctctac
      421 ttctttacaa aaaaaattaa aagtaaaaag taaaaataaa aaactcttaa tgggaaccct
      481 ggcactgtct gtcttctctg ttctgcagaa atgttgaagg agttgaacca gcaacgcaga
      541 gcgaaagagt ttacagacct gaaaattatt gttgaaggca aagagtttga agtccaccaa
      601 aatgttctag cttcctgcag cttgtatttc aaggacctga ttaaaaggtt tgccttcctt
      661 ccagctgtga tctgctctgt tcttttgtag ggcgcatttg tgtcgctttt ttttcctccc
      721 ctctcttgca ggtttatgaa gattgaatct cctgtcacag agccagtagc cattctttcc
      781 acctcctctg aatgtatttc caaactgaga ctcagaccca tttgttacac atctgactca
      841 tacagggtaa ttatttctga tgagtagagg ccaattttgg ctgaagaaag tgttacacca
      901 ctgagagatc taagatttga actcaactgc taatggcgat tcagaagtca aaactattgc
      961 tgttgatgtt ttcagaggac tctgtcacat acgacaaaag tctgtccttc aggctacaat
     1021 aagccatcag cattctgttg aacgatgctg agacaccgtg ctgataaagc attttgagta
     1081 tcgtaatccc ttcaccctgg aatctttgtt acctgctttt gtgtagcttt tatgggctaa
     1141 gggattgata tttttattat ttggggactt tcaaaggaag acaactaagt aatt
//
LOCUS       KCLA01001268             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20666upu ultra-conserved element locus uce-4079,
            sequence.
ACCESSION   KCLA01001268
VERSION     KCLA01001268.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20666upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-4079"
BASE COUNT          246 a          143 c          117 g          224 t
ORIGIN      
        1 tgaacatcta cagtcaggta tttggacact acaaatttaa aaaaacactt tctactgtca
       61 aaaaatgtat taatcagaaa ttaaagttat ttatttttta taccctgctg tcagacagct
      121 cacatttagg gcaatttggt accatataca aaactattta aatactgctt tcaacttttt
      181 ggagcctttc attttaccag acttctgtgt tacttcgata tgcaatttac tgaaggctag
      241 taattattag gacatgtggt aggcgtttat caccactaac atcacacaac ccacactatg
      301 atcaagatac aatagggcaa atgctacaat taaaggcaca ttctttggtg cataacaata
      361 gaagccttgt gacatggcaa gattaagaaa agactcaaac atctttaaaa ctactcatta
      421 ccaccagtta aaatgtgcat gtctgacctt tatggtaatc agtagtactg cacttgtgca
      481 ctattgagct aaataagctt tattttagac acacagaatt ctttgcagtg acctgcagtt
      541 aacttagctg atctcagagc tgtcgcttac aatgaatcaa cccatcagtg gtcataatga
      601 taggccatca tctttatcaa ccagtttatg atgacaggca gaaaacggca ccatagattt
      661 tcctgccaag cagagtagta tttaaatgtt gactgctaca tacatcagat taacaaggtt
      721 gcaaagttac
//
LOCUS       KCLA01001269             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20681upu ultra-conserved element locus uce-2162,
            sequence.
ACCESSION   KCLA01001269
VERSION     KCLA01001269.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20681upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-2162"
BASE COUNT          239 a          146 c          175 g          212 t
ORIGIN      
        1 cgtcgcttgg tatccctcct tatgccttgc tttgttcttc tctctacgtc catactagtt
       61 catcgagtga actcaagtgt ctcagagcaa ttttaaaccg gtgaacacaa ggaatcaact
      121 caggaagaat gaaggagggg aaaagaaacc tctgacctga aaaagagaaa caaacaaata
      181 aaagacacta agatgaaaac aaaatagtgc catggattta catatggggt tttgatggaa
      241 actagggctg ggttttaaat caaaactcac catctcaaaa ccacttcttt tcatccgcct
      301 gcaggacttg aggtaagtac gtatgcgctt tctggcacgc tcttgatact cagggaattg
      361 tcgcctgcat gagtcaatga tagcctggat cttttctttg ggctgcttag agattgggac
      421 cattcggtcc aagttttcat ctacaaacag cctgacaaac atctgttggc aagagggaga
      481 cagaggagat gggtttggag ggcggctctc ttctcttcct agcttcctgt cttgattact
      541 gataggaaga cattttttct atccactgaa gagctttgta atgggaagcc agagatatta
      601 agcaaacagt tctttaaagg gttattttgg ggggggctga ttaaaaaaag acaggaaaaa
      661 atagtctata ggatacagaa cttgtgagat aaaccagaac agacggtgaa aacaggcact
      721 acttaagttc cgttattaac aataagctgt gattgctaat cagtttattg aa
//
LOCUS       KCLA01001270             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20697upu ultra-conserved element locus uce-5871,
            sequence.
ACCESSION   KCLA01001270
VERSION     KCLA01001270.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-5871"
BASE COUNT          151 a          115 c          117 g          182 t
ORIGIN      
        1 atggcttgct cagaagctga aaggacaagc agacctgtct gcactcggga tcctacagtg
       61 ttgtgctatg agacacaacc tgttgcagca gagtgctatg ggttcaggaa agtcacccct
      121 ggttctcaga agtaagagca ccaaatggcc gtgttctgtt cctgctctgt ttagccacat
      181 acatgatcac cgcagttccc caattccatg ttccaccttt aattgtgggc atttagcagg
      241 ctgcctctta ttattaagat actgctgact tttattgtca atgtggccac aggacaaggc
      301 taataattac tcgccccaga agcagcttgt ggttttatat tacattgagg taaattacac
      361 tggaattaga gtggattact tttatcaaat ggggaataag ctgttaatta actccccgct
      421 gtagcaatct ttttctgagc ttgcaactgt tattagctct agattaaact gttgaattaa
      481 tttcccactt acttactatt tcaagagttt ttaatttacc tggcagcagt tttaatggga
      541 aattgtatta gtgagcataa attgt
//
LOCUS       KCLA01001271             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20713upu ultra-conserved element locus uce-1917,
            sequence.
ACCESSION   KCLA01001271
VERSION     KCLA01001271.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20713upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-1917"
BASE COUNT          196 a          107 c          143 g          202 t
ORIGIN      
        1 tgagtagctg catcaagtgc tattttttac tgagtacttg ttttgcaaaa tgcttttttg
       61 gagaagagtc tgtaacagta taagctggag gtggctgtga ctgcatcatt gcatctgaaa
      121 cagagcaagc atctttagaa tcagtagttt tcaaactttc agccatgtgt ttctataaat
      181 acattttggc tgtgtttttt ttaaagcagc ttttttgatt caatttccca aggtctgctg
      241 gttgacaggt agaaaaacac atattttttt ccttctgatt ttaataacaa tgaaaaagtg
      301 tacaagctcc atggtcaaga taggacagtg tgtacaaaaa aattgttaac ttaaggcaaa
      361 atttactgtc agggaaaacg gaacattcct tctgaactca cgaactggta gtgcatgtgc
      421 aggttggttg tagatggttg ctacaataag gcttctttca tacaggtgtg tttatgcccc
      481 aggcttgctg gccacagtcc attccattta cagaagctga attaaacaat aactaccgca
      541 ttgcaaaaag aagaaggaaa aaaaaaggtg agcgtcaaag gagatgcctg agagctttgt
      601 tagggccaag aaaaaccctg ttgcagttgt cagagcttgt tgatgttg
//
LOCUS       KCLA01001272             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20729upu ultra-conserved element locus uce-6054,
            sequence.
ACCESSION   KCLA01001272
VERSION     KCLA01001272.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20729upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6054"
BASE COUNT          241 a          137 c          137 g          232 t
ORIGIN      
        1 agtgtacatc cagcccacag taataatgat tcatatacat atatgtgtat atgctttatt
       61 gctaccttta gctggattaa aagcaatata tcaaatttta tatttctgct tcttttatta
      121 gctttctagc atttgatcag ctgatagagg caataatgaa atgttttttt ataaaccaga
      181 gtttctaagt cctgtcctga gaatgtaata tttcaaaaaa tagccgaagc tttggggaaa
      241 aaaccaatta cagaaacagc attaaaaatg ccaagcactg ggcagaagca attctggatc
      301 agtttaaaaa agtgattgat gaaactctaa tctgagctga aggaacagtt tcacgacaag
      361 ctgtgaccat tccacacact tcattagctg ccataattag cctggtgttt caatttgtta
      421 gaactggtgg ggacaatttt actcggaatg caaacatcaa aaaacagggt gcctcagact
      481 tcagaagagc ctgatgagaa gcttttctag tctctgttaa ctgaaagatt aattacagct
      541 gataggaggc tgtactctga ttgtcactct gtctatgtgc attactttta gcattagaag
      601 aaagacatgg ttgacactac actgctcaat caagcaactt cgcattaggg tacaacgtct
      661 ggtaacatgc aaggttttta ttgtttctct tcccctcccc aagtttgaga ctttcatacc
      721 taagaagctg tactttaaaa aagaagt
//
LOCUS       KCLA01001273             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20745upu ultra-conserved element locus uce-1706,
            sequence.
ACCESSION   KCLA01001273
VERSION     KCLA01001273.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20745upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-1706"
BASE COUNT          163 a          118 c          152 g          188 t
ORIGIN      
        1 gcactttttt tactaaaatc actgagttga aatgatggtg cgtagggagg tcttgcagtg
       61 tggcaaatac tgagagtact cactgctgcg agctgagcac gtgactacag aagggcaaga
      121 tgagcgtgtt tcgtggctgg gtcgttttgc tgtgtcttag cagctccccg ttactgttga
      181 gcagtagccc gtagaacagc ttttgctagc tttttccagt cctgttaatc cttttactgt
      241 tatttcaaca gggagaacca tgaaacggag aagccagcac tgaacaatat agcggacaat
      301 acagtagcaa tggaggtgac gtagtttccg caggagtgaa actgcagcct tgggaacttg
      361 tttaggtgct atgcatcagt agcattttga atgcaaggga tgatggaatg ccgcacattg
      421 cgtttccatg gcagctgtgg ggacttgaca gcaatgcaca tctctcatgc tttgtttttt
      481 tcttactgtt aataggaaag aatcaacacc tgtaaattaa caatacagca attatctgta
      541 cagtactgca tatttgtaat acccttgtat atatgttact tgaatacaaa actgttcatt
      601 tgtgatgctt tgcacttggg g
//
LOCUS       KCLA01001274             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20760upu ultra-conserved element locus uce-2671,
            sequence.
ACCESSION   KCLA01001274
VERSION     KCLA01001274.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20760upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-2671"
BASE COUNT          193 a          184 c          199 g          224 t
ORIGIN      
        1 gagaacctag aggaagctgt gtggagtcat tcaaactgtt gaatgctggg tggttgtgtg
       61 acggagagga cgtgtctgca gagggcctct tggatgactg tcgctttctc gccgctgtct
      121 ccacaggttg cttctccaac agacacaagc aattttgaca gcttcccgga ggacagcgat
      181 gagccaccac ctgacgacaa ctcgggatgg gacatagatt tttaatgtat ttctcttctc
      241 tgcttctgcc ttgctgaaga cagcttcctg gaacatagct gccagtgaaa ccgaacgagt
      301 tggggaggat tagtgctcgg ggtcaccgtg atgccttgat tgatgctgct acagtaacta
      361 tagtggcatt aggacttact gcttagatga caatagtgct cttcacgttt tctgtttgaa
      421 cttaaaatac cagttgacat ggtggtcctg acgcagagcc tttcaccagt aaagagacat
      481 gttttctgtc actgcgatga tcctgctact ccctcgctga tccaagttga gagatgtaag
      541 gtgcacttaa ttctagctgc gaggtactaa ctctgtcagt aggatccaca gtaacttatt
      601 aagtgctgta ggtagataca gtgcaggatt tgggctcctc ccaccctcca aactcttcca
      661 ctgcaggcca gggtaggagc aaagaaggac cacaatggta ctagtcaaag agttcatgtc
      721 agagcagtgg taaacttgtc ctttctcctt tcagagcagt attcatgacc agactgaatg
      781 ttacctttcc tctttcttgt
//
LOCUS       KCLA01001275             248 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20776upu ultra-conserved element locus uce-7971,
            sequence.
ACCESSION   KCLA01001275
VERSION     KCLA01001275.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 248)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 248)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..248
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20776upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>248
                     /note="ultra-conserved element locus uce-7971"
BASE COUNT           73 a           50 c           62 g           63 t
ORIGIN      
        1 taaccccaag aggaatccgc agcctccttc ctctgagtgc atttgccaat aaaagcaact
       61 agccagttca ataaaactaa ttaaattaat ctgtcatccc cagggaactg aaacggggca
      121 tgaaataggg aaacggcatc aattcccagc gttttattga tgagtggagc tggatcaggg
      181 ggaagaattg gttgggaggg aaaatctgca gttttctatt gatcatcaat gtggtcgctg
      241 tgtctgcg
//
LOCUS       KCLA01001276             929 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20792upu ultra-conserved element locus uce-2840,
            sequence.
ACCESSION   KCLA01001276
VERSION     KCLA01001276.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20792upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>929
                     /note="ultra-conserved element locus uce-2840"
BASE COUNT          210 a          223 c          256 g          240 t
ORIGIN      
        1 ccttgttttc caaccccccc aggaccgaat aacccagcga ccaccgcacg ttaggcctgt
       61 tctgtgcaca tgctgttcca cctgtgttac tgcttattgc agctagcagc gttttctgcc
      121 aagttccagc tcaaaggagt tgtatagcag agcaaaccta gcttgaaaac agttgaagac
      181 aaacctctag ctgcatagga tgatgcccga gctcagaaga cggagagcta ggatgatgag
      241 gtgcggtgaa gcatccagct tttgcttgcg gaggggcgcg ttgcagacgc gctcggagag
      301 agcggtttag gatttgcagg agcttaacag gtgcctcgtg gatgtccctc tgaaatgagt
      361 aggtggctct ccagattctt gttaataact cgataacccg tatcttccag ataatcgtta
      421 tgtaccttca ggtattagaa tgtgaacgta accaacacct ggtccagacc tcatggtaag
      481 ttgcttttcc ttgttacaag agaccagcag gggcagtagc agaaatatgg cattgaggca
      541 ctctgggcag cattgctcag agtattgggg gccacagcag acagctccag tgtttcttgg
      601 cgtgccccac gctcctaccc aaatgttgct gggcctcgta agttagaggc actgttttaa
      661 tggtaaggta gctttcccct ctgacttctc acttccctcc tctctgcttt cacttttcag
      721 atgaagggaa agggtagagc gggctgcacc gtttccttgg gtttaggcgc tcagagaaag
      781 cgctgtgcag ttcgagggtg gcagcagtgc tgggggatgg ctgttgccag tgctcgagct
      841 cgagtacagg gggtacctca gcgcagataa attcctctct gggtgtaatg caaagctgag
      901 ctcgatgttt tcatgtttgc taagaagtg
//
LOCUS       KCLA01001277             944 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20807upu ultra-conserved element locus uce-6890,
            sequence.
ACCESSION   KCLA01001277
VERSION     KCLA01001277.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20807upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>944
                     /note="ultra-conserved element locus uce-6890"
BASE COUNT          276 a          164 c          179 g          325 t
ORIGIN      
        1 ggttttcttt caggagaaca cagtttatat tatctgacta ttgtaatgag ttaaacaaaa
       61 cccagcaaag taacagttgg ccaattattg ttgacagtgt tagctatgat gaggcatatc
      121 tgtaaatgac ttttttttag ctgtgtgtat ctttctgtgc caaatgtcac ataatgagac
      181 taaaacatta tttctaactt tctatttagc ctgctaattt tggaatttgc cagatatagt
      241 tgtatcattt tgtaagtggt gcttctggag gtgccacaga tgccaaactc tgataaaacc
      301 taccctatct cattaatgaa cacacaagca gttgttcccc atctgctacc tctgtctgaa
      361 aggttaggaa agccttcctt cttgatcaca aaggacataa ttattgtctg tataggagtc
      421 aagtacaaag acagttcatc cagtttgacc gctactccac tgcagaccac caaagattaa
      481 cagctgcttc tgctttgatt aggttaggta ataacagtta ctttagttaa taattgaatg
      541 gattcccagg ccatgtaatt caggtttagg ctgtcatttt ttgctggcat gtagctgagc
      601 tgtattattg gaagggagcc tgtaatccta ttagtcagtt gtcactcaaa ccattggaga
      661 agaaggggaa ttcaaatcca ttaaggtgtt gtaacaggta ggtaaataag tcagccagaa
      721 ctagccagcc tgtctttgaa aaacccaata aaggtattaa tttaaagtct cttaaaatta
      781 ttagttcata attagtccat aaaatggcaa ttgatttgat taatttattg ttattttagt
      841 ttgtcttacg tgttggtgta tatgtgctct ctgctacatt tacttgttac cagctctgtt
      901 ctgctgcaaa tagttgctgt gtactctaag tgacaagttt ataa
//
LOCUS       KCLA01001278             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20823upu ultra-conserved element locus uce-6608,
            sequence.
ACCESSION   KCLA01001278
VERSION     KCLA01001278.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20823upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-6608"
BASE COUNT          225 a          165 c          183 g          229 t
ORIGIN      
        1 aatttatcta tgctaaaagt gggactcttt ccagcagcct gtgatttgaa ggcactcttg
       61 tttttccaat tgactaagtt tggtctgcag tggcccatga atgtggtctc cagtgatcta
      121 ttagtaaact gggatgtagc cttcatttca ctggcctgtt agctcgctct cttgttggaa
      181 tatattaaaa ggagcattgc actcaaggca acgaagtgcc ctattaagga gcagaagtat
      241 aagttccaat tttgtgaggc attttaagac aaactggagt ctgcaaagac tcaggagggt
      301 atgagaaggc agtcacactt cagagaaaga caagctgctg tggaagacct ttcctttcta
      361 gtttggggaa aagagaaact tgtgatgcgc tcactggaaa acagactgca taatggagca
      421 agtcatgtgg attgcccaga gcctccggag aaatacggga gcaatttcta ttccttggtt
      481 gatggctgtc tgaaattcta ttcacaaatc caaacagaaa caaagcctca ggaggtcaca
      541 actgcttcct caacgtttgc ataatgggca gcttgcagac aacgtctagg atacctgctg
      601 atcaatttaa ctacttcaac atgttttgtt tgtattatgt ttatatgtga tgcagtttgc
      661 tgacaagtgc aagccaggcc cgagaaaccc gcttgtcagg ttgatttatg agcacatcaa
      721 actgtaactt tctactcgcc actccaaacc tacagtagca gttcattaat caggggcctg
      781 tgactttgaa atctgtgctc ag
//
LOCUS       KCLA01001279             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20838upu ultra-conserved element locus uce-7234,
            sequence.
ACCESSION   KCLA01001279
VERSION     KCLA01001279.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20838upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-7234"
BASE COUNT          139 a           76 c           66 g          114 t
ORIGIN      
        1 tttgttacat catataaaca tggagatttg cttctcgctt tactcatgct gtaaaaagaa
       61 agttttaaag ggtttagccg tacctgagga tggaaatgca ccggcctaat gtaatgctga
      121 ggaaaaatta agacaaatga tactgcatcc tcgccacaaa ctgcagcttg cacaaaattc
      181 actttagtta ttatactgtg aatacgtgtg ctaaacctcc tctgtgtatg cacaatttat
      241 gttgaatgca acatgaatca ttttaataga cccagcaaaa agtccccaaa gtcaattttc
      301 aaattatgaa ccttggaacg gaatagaaca acaatgaaca acaactagtt ccgattttat
      361 tctgaactac aaatgaacca ttaaaggtac agtct
//
LOCUS       KCLA01001280             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20854upu ultra-conserved element locus uce-2801,
            sequence.
ACCESSION   KCLA01001280
VERSION     KCLA01001280.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20854upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-2801"
BASE COUNT          157 a          100 c           96 g          167 t
ORIGIN      
        1 catggctcat cttttgtgaa gtgacttaac tgtctaacat aaagggcatt agatgtcttt
       61 ctaattggtt taatcttaat tgggttgact taattgcaga aatctctctg aggagatgac
      121 tgtctcttcc tttcatcttc tccccctgta taaacaggag attaaatgtc ccccactcat
      181 tttctgcaga aaaacgcccc tacatctgcg aggtttgcaa taagtccttc aaacgacttg
      241 atcaagtgac tgcacacaaa ataatacaca gtgaagataa accttataaa tgcaagcttt
      301 gtggaaaggg atttgcccac agaaatgttt acaagaatca caagaaggta aagcactctg
      361 ctgttgttgt ttacaggtct accagcctca gatttgcagg ttttctttta agtggttcat
      421 cataagctct ggcttagaaa catgggatta aagtattgga gaatgtattt ttagtggtct
      481 ttgttatatc caaaatctca aaatactaaa tgcattccag
//
LOCUS       KCLA01001281             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20870upu ultra-conserved element locus uce-519,
            sequence.
ACCESSION   KCLA01001281
VERSION     KCLA01001281.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20870upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-519"
BASE COUNT          189 a          105 c          101 g          181 t
ORIGIN      
        1 taaagaatga aaacgctaat ggagtccaga aatctgttaa tggtactaaa attataacag
       61 tatagcaaaa gaaaaagccc cacacagtaa agtctatatt atatattttt tatgtcttta
      121 aatggaattt acagttctcc ctggcaatgt gaatgaacat cctataattt agtcaattta
      181 cagattacag gttcaaattg accttgtagc ccataaaatt gctcatcttc agtgcaggat
      241 tagaagtggg aaaagaatgt cataactgta tttaaggaat ttaccataac aatggaaagg
      301 aggatatgca tgcataattt tagccactct tgctcacatc acatttttta attctgaaac
      361 aatgcatatc ctgcactctt ctgctggtta gccatggtgg agactgtttc aatttactca
      421 cccacagata tgacacttgt attccctcat cccaaggtgc ctcttgacat ggtttctggc
      481 atctccaagc tgagctgttg caaagtggca tatcttgcac ttgaatggct ttgatcctaa
      541 gtaaaattta gcataagata tgagtcgaat tagaat
//
LOCUS       KCLA01001282             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20885upu ultra-conserved element locus uce-7726,
            sequence.
ACCESSION   KCLA01001282
VERSION     KCLA01001282.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20885upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-7726"
BASE COUNT          163 a          131 c          131 g          146 t
ORIGIN      
        1 ataaagagct ccattgtgta gggccccact agtcctccat tgctcccagc actcccttaa
       61 aagggggggg gtggggagac aaccattcca gctgggcttg gaacctcgtc tgagtcagga
      121 aaaccacagc tcataagcaa agaggaagca taatgttcta caaggacaaa acattagcaa
      181 aaatgtcact cagccccagt tccacatgtt ggctgccacg gcctcttcct cctagcatgc
      241 ccgattgata taaattccat ctgctcagca gccaagtgac agagaagaaa taccggcatc
      301 tggtctctat tgctctcggg tttttgttcc atgttagact ttagctagaa acatatgaag
      361 agatgaaggt gctggcaagc aactaaaagg ctgcactggc acaaacgaga ctttctgatg
      421 cttttcacac ttcactctgg atttttacag ggaaaaggcg gaggagactt gataaactga
      481 gtctggagag ccaacaggcc tggaggtcat ttggtgcttc taactttttt tgcgtgttta
      541 aaactgtaaa gcaaaacaat ttttttttaa c
//
LOCUS       KCLA01001283             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20916upu ultra-conserved element locus uce-1230,
            sequence.
ACCESSION   KCLA01001283
VERSION     KCLA01001283.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20916upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-1230"
BASE COUNT          188 a          150 c          165 g          217 t
ORIGIN      
        1 ccacctccgc cgggagcgag cgccgcggct gtgcggaaaa gccatgggag gcaagacctc
       61 ggcacctgtt cagctgaaat caagggctta cagtatactg ggcagcctgg cttggtggta
      121 ggagcgagcg aaaggaagga gaagcaagca agaaaaagtg agagaggatt ggagcgactg
      181 ccgaaaaaaa aataaaaacc caaggaagat aactgggaag gaaaaggatt ttcatggcgc
      241 aggctgcaga gctaagcaag aagactgaag gttgcatctc tgctcttaca gtctctaact
      301 gtctaggtcc agataatgag agattgtgtt gaggatgctg ctgctgctcc cccgttcact
      361 gtggaagcca tctccaaatt agccattaca tatggaaact ggagaccaga attttagaaa
      421 aagggattaa ggcgtctcgt tttggggggg gttctctctt tatttgtttg gtttttcttg
      481 gttcttttat ctcttttttt ttctttttcc tttttccttt ttttatattt caaccagaac
      541 gtttccgatt taaaaggcaa gcctcttccc gtgtgctctt tctaatttac actcttttcc
      601 gtgggctttc ttacctccct tttttgatat ctatctctct atatacccat tatattatta
      661 atcggaatta ttattctttt attttattaa acacacacac cccaagaatc agaaggcggt
//
LOCUS       KCLA01001284             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20930upu ultra-conserved element locus uce-3759,
            sequence.
ACCESSION   KCLA01001284
VERSION     KCLA01001284.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20930upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-3759"
BASE COUNT          335 a          168 c          150 g          269 t
ORIGIN      
        1 atcaaggtaa agcaatgtca ctactctgca ctgaccccac aacagcccat caaaatgtaa
       61 caatactgat ctgtgatcac aagaacatgg tttctgctat tttagttttc ttggaacaaa
      121 ccattcctgt gagataacta cttgtcaact aaaaaatcct cttattttca caacagaaaa
      181 gtctaaaatg agctattttc aaatcacaag tgaaacttat taacagaaat gtaggatcaa
      241 tggaactaca taatactgtt ttcaaaaagc cttcagaagt aaaaataaat aactccaaag
      301 tcacattcct caaattccct tttaattcca aagtacaaca gaaaggcatt atggaaaaaa
      361 cagtatttcc cttcattcat taactcatct gtaactgcac tgaattcaat aacattcctc
      421 tgctattcta agcttgaaag gcatgctcgg ggtaaagtgt tatgttggta taaagcacaa
      481 tgccagactg atgtgctgga caaaagtgat caaagttgaa gtaattttag ccaatgcaca
      541 agtattctgc tgcattattc taccagaatg acatctgttg agcaactcgt tgcagaataa
      601 actagttgtc atagacagac ccggtcgggg aggggacaac gtagacttat tagagtaatg
      661 tttgattaaa taaactgctt gagttaaaat cataactgga tttggaattt atgccaaagt
      721 agtcttcttt caaacaacaa gccacaatca attacttaag ataaaataag cttgctttta
      781 aataaccatt taattgtagg tttgtatgat aattagaatt gcaccaagaa agcagagtgc
      841 aaaagtttta gagactagta atattcaccc atcaagatga gaaaaccctt cttcattaaa
      901 gtttaagggc tgaagatttg ca
//
LOCUS       KCLA01001285             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20945upu ultra-conserved element locus uce-6411,
            sequence.
ACCESSION   KCLA01001285
VERSION     KCLA01001285.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-6411"
BASE COUNT          163 a          137 c          159 g          149 t
ORIGIN      
        1 gccgccatgg ccccgcccca acccacagat aactccattt acagatctgt tatccatctt
       61 caatccctcc tcctgtctca gccgaccgaa ggagcgtgag ctcacatccc cattttcccc
      121 agcggatgcg accgggcttg ggagttcctc ctcgtgccat cgcaacgaaa cgaaggcgag
      181 ggagaggccg atacaacgtg ccgtggtttg gaagtcattt aatcaggaaa gctaaaaatt
      241 tggaagcaaa cagatatttt agttaataga aaccatctgc actgtacagt aggcaaattg
      301 tatgaaaatg aataaaactg tctctggagg aaaatgactc aggcaccagc ttatgtaatg
      361 aagatgtatc tgtgcctttt agcatttgca ttgtctatta gggtaggtaa atcgcagcgc
      421 tagtgcaagg gaaacactta gagattttat taccggcgtg tgactgatga cagaggcagt
      481 gatagaagtg atgcccctta ggaagggctc gttgcagacc ctaaagtgct ttgtcaagca
      541 gcgttgcact gggatgcgga ggagaagctt ttcgcttggg cttggaaggg ggattgtgct
      601 cgatgatc
//
LOCUS       KCLA01001286             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20960upu ultra-conserved element locus uce-7960,
            sequence.
ACCESSION   KCLA01001286
VERSION     KCLA01001286.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20960upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-7960"
BASE COUNT          169 a           59 c          114 g          128 t
ORIGIN      
        1 aagtcttact tgaggagagg atgagaaatg ccactttact cttgataaag tgagaataat
       61 cttgaagaaa aaataaagta gtacgatgag aatgaaggct gcataaatat cttctaacca
      121 ctcaaaggaa gcaactaaaa ttgtttaatc aagaagttct ggagatgatg gtgtggtaca
      181 agtcttaagc tgctggcaga gacacagtta acattgtaag tggttgaact tcagtgtggc
      241 acttctccaa atgagttgac tgttgaaaat aaaatgttcc agaagaactg ggagaacagg
      301 aaagaagtta aaatagcatg gtttgtatgc cagtgctgaa agaagaaaag gggggaggaa
      361 gctcaactta tgataattat cttttgggtt ttagtgaaaa gactttagta gaagtttcca
      421 aatgaggaag ctagattcaa tagtatgcag tcttcattag tgtccagagt
//
LOCUS       KCLA01001287            1082 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20975upu ultra-conserved element locus uce-3528,
            sequence.
ACCESSION   KCLA01001287
VERSION     KCLA01001287.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20975upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1082
                     /note="ultra-conserved element locus uce-3528"
BASE COUNT          345 a          211 c          211 g          315 t
ORIGIN      
        1 tctgactgac aaactatggc acaggaagag tttcttctca aaaatcctag ctttattata
       61 tttgttggct gatgctggcc acaaagggcc aggtgatact tatttacaga tagttattga
      121 attagttggc atttcaggac tgcttaacta gtacataggt taattaatcg agttcctaca
      181 attaatattg ccagttgctg gaaacgtttg gatttaactt ttgtgtctgg aaacatgtac
      241 taaggcttta aagtttgatt tgtagcatca gtctcgaatt ttacaacccg tcataattaa
      301 ttcaatcccc tgcactttga aatctccaca ataataagaa ctttatcagg ctgccgctgg
      361 tatgaagtag cacagcaaac tgaaatccca ccgggagcag tctagagccc tctcttctaa
      421 gcagcaaaaa gctgttatca ttttctgaat tacaggaact ataaaaggac actctactca
      481 agctgccgct gaatgtcacc tgaaaagcaa tcacaaaagg gctctgtctt ggcttatctc
      541 tgagctctgt cactacggca accagcaggg aataagtatc tgtgggtcta tgaatttaag
      601 aatcccataa aagccagggc taaaaaggca tgtgcagcct ctcaaagatt gactgcatta
      661 atacattagc aaatactgtg aaacactgga taaatgtcag caattatgga aaaagcatct
      721 aataacgata ttcgttgtct gtcaaacccc cgagaggttt gatatgtaac tgccactcaa
      781 agctgtctgt aattttatct cttttataca tctgaatcca catcattcaa atttgtactt
      841 tgaaagtaat aaaagtgtaa aagcaggatg ttctgtgctg atcgcaactg tcaacaaagg
      901 cgcagtacag gacagcaatg ctcctgctga caataacaac agttttcact agctgcagca
      961 gacaagtctg ttaaaaatgg aaacactact gcaggattca tctgcaagca gtgttattaa
     1021 gcagtgactg gagagggctc aacattgatt tgattattga tttaatgtat ttagaagagg
     1081 ta
//
LOCUS       KCLA01001288             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 20989upu ultra-conserved element locus uce-7772,
            sequence.
ACCESSION   KCLA01001288
VERSION     KCLA01001288.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="20989upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-7772"
BASE COUNT          220 a          127 c           92 g          223 t
ORIGIN      
        1 atatccttat ccatggtaat caagtgtaca actaaaacta aaactttgaa aaaatctctc
       61 ctttgaagaa tacataaagc tctcatacag aattctttta aactcttcta tacttaaagt
      121 tcagtgactc ttgcctgacg atatcactag cttttttctt atgcatagta gaacatcaaa
      181 tactttatag ttcccatttt ataaataaat cggcattttc catcccattt gtgtttatct
      241 tcagcttcac aaagaaacca gtaaataaaa ctgtcaagga cagtcacaac aaaatgatct
      301 cacagaaaga tataaaactt gaagatacta aaagatgctt ctactctatt ttacataaaa
      361 agacagattt aaaaagtgca aggcaagatt tgcaggggta ggggaatatt cgttattttt
      421 aggcacatcc acttctttaa agcaagcttc aggattaaat tccagtttgt tcttcatgat
      481 acctgtttca aagtctctct cttagaaaac aaaacacaag aaaaaccaca tctgttcaat
      541 gtcaagcagg aaatttcctg gcaactaagc gtcttcaatt atgtcttgtt cttccttttt
      601 tcatccttgc tggttttggt ttgggaatat actgattgtt tgcctgatac tccagttctt
      661 ta
//
LOCUS       KCLA01001289             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21005upu ultra-conserved element locus uce-4345,
            sequence.
ACCESSION   KCLA01001289
VERSION     KCLA01001289.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21005upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-4345"
BASE COUNT          234 a          153 c          174 g          289 t
ORIGIN      
        1 gtatgcattt agttttatta tttccactaa agttattcta ggtttccaat ccatacgctt
       61 ctctccctta ttcccattct cttccccttt gggaggagag gggttaatag agagtgtctg
      121 tcattcgtct agtggctggc cccgctttaa cccgtgacat aattacagaa cgttaagatc
      181 acagattata tagtttatga tttatgttgt ctgaacagct accctgtgct gcttcttttt
      241 tttttttatt cctgccctgg aagggttaac aatcgaggcc tgtctatagc tcatttctat
      301 agtaacagca agactgagac ttttttatgg gcacctaata attagaaagt gctagaaggt
      361 ataacaatat aatgaatcaa aactgataga cttgtgggtt tccatagaaa catgtataat
      421 tatgataatc ggtccctggc gtaccctcag aatcgtatac attcagttaa atgcaataaa
      481 cattaggcac tatttagtga gctgtgatgc agattaacag tgtgagatat agggaggcta
      541 tgaataaaat tgttgtacag tttatctcaa actaatttcc cagattgctc taatagactg
      601 gctaggtgga caggaagaat tggaagtgtg tttttgttag tgattaaact aacaaagata
      661 atatttcgta actgttaact gtgatgcggg tcagaatgcc ctgtggcaca ttattacacg
      721 ggagacagct aaatccgtga agacaaggac atggtggggc tcaactgaat gatttctttt
      781 tggagttcaa tatggggata ttcatgcttc ctctgttcct cctgtcttga tgttttactc
      841 cccttttttc
//
LOCUS       KCLA01001290             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21021upu ultra-conserved element locus uce-6707,
            sequence.
ACCESSION   KCLA01001290
VERSION     KCLA01001290.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21021upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-6707"
BASE COUNT          150 a           90 c          109 g          112 t
ORIGIN      
        1 ttgcagatgt ctacttctca gccttaaata aaaaaaagtg agcagccaaa atctagccag
       61 agagaattat gaccaactgg cacccattaa aaagttcccc acatgtggca cagaacgaaa
      121 cggtcaatac gctgcaattg tctgcctaac aggttgagcc tccatccaac tggtagcaat
      181 caggcaggac actagagcgg gcaggaaatc taaaattagg ttttactacc tataatggag
      241 gatttatggg ataatttaat tggcagtctt gggactgaaa cccaaggtga aggaacaaaa
      301 acatctttct ggttatatgc tatgaaccct tcctgcagtg ggctgaaaaa taaaagtact
      361 ggggaaataa cctagagatg taatatcccc tttctagcgc taagtaggtg ctgcacgaac
      421 acgtttgtgg gtatgtgggg gagtggtgat taaccaggaa t
//
LOCUS       KCLA01001291             282 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21035upu ultra-conserved element locus uce-7128,
            sequence.
ACCESSION   KCLA01001291
VERSION     KCLA01001291.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21035upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>282
                     /note="ultra-conserved element locus uce-7128"
BASE COUNT          102 a           42 c           32 g          106 t
ORIGIN      
        1 tttattgtca ttattcaaaa catgaatagg agcgaatatc ctctaagtta tgaatgtaat
       61 caattttgag tctttaattg taattttttt tccataaaat tcttttaatt tagtctaata
      121 taatggcaca tcaagcagta atgggtacat taaattgaat catgatgttc atatacacat
      181 tttatgacac aatcaaatat cccaatgcat taattcatgt caatcagtta ataaaatcaa
      241 ataggaaaca tttctctagt gctgttaact acacttctat ca
//
LOCUS       KCLA01001292             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21050upu ultra-conserved element locus uce-6164,
            sequence.
ACCESSION   KCLA01001292
VERSION     KCLA01001292.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21050upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-6164"
BASE COUNT          195 a          128 c          112 g          163 t
ORIGIN      
        1 tgcctctgac atttacagtg atgcccagtg attaatctgg tccagcttct ctggaattct
       61 catcacaaac atgaatcttt aagctcacct tgttggctga cagtgacatt caccagttag
      121 gatctggaac agaatggctg tacaggcaaa cgggcacggg gaaattatac agctgaacca
      181 tctcgtgttc tcacctgaaa tgtaaacttt cctgtcatct ataaatcaag cagtttatga
      241 ggctgcaata tttacactct aattaaaaaa tcataaagcc agagcccttc agtttgtaaa
      301 aggaagaact caggatctgc tactgaaaca tggcattaat cagtaacttc taatgatctg
      361 ctccacagcc ttagaggtta tgtgcttact cagctacata taacaaacaa gataaggaaa
      421 gtgagagaaa tgaagggaat acactacgtc aagcacaggg cttcactacc accagaacct
      481 attcctgacc cctcaggtca aatttcgttt attcatttcc aaatagtaac agacttgtaa
      541 cataaagctt tgataagaca tcacatacag aatgatctgg agatgtattc gatgtgtg
//
LOCUS       KCLA01001293             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21066upu ultra-conserved element locus uce-4184,
            sequence.
ACCESSION   KCLA01001293
VERSION     KCLA01001293.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21066upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-4184"
BASE COUNT          251 a          164 c          124 g          270 t
ORIGIN      
        1 actgaaatat ttataaggct gcttttaaca tcttatagat gttaacatct gatccattca
       61 tttatatgga caaattttct tcttaaacca ttacacaaac aaatatttca aactattcaa
      121 ataataaaag tacagaaggc tacattatcc ttactgaaca cttcttgttg gaacacaaat
      181 taagcataga gttgtgcact atacataggt ttatcttcct aatttgaaat ttcaggctgc
      241 tgctgcctta cattttgatt agaggaaaca actgatagag gacagagaag ggttagctgt
      301 tgcaccattt gttgttgaac acagaatccc agtaccttaa attccagttc cattcctgtg
      361 acattctcgc ctgtttctat ctgtgtcagc ttctggatat atgcatacag atttctggct
      421 ggcacttcgg tatttccaca tgtcactgct tccaacagtg catcgtggat aaagatgtac
      481 tgatcttcag tttgaaccat gtaattccgt tgcgctctca ttagagttac gtgaccataa
      541 atatctacag tcttttcatg ctttattctc tctaacatgg catctattac aatgaagcag
      601 ccagtcctac cgactccagc actagaagaa atgaacacag taaggaaaac atgaaggact
      661 actttataca ttttgattac ttctatggca ttcacattct aaagtttcat aatactggtt
      721 taaacagcac atttctctta atacaaatct tttttatgaa agagctggtg ccttgaaata
      781 attaaatacc ttgaacactc attacctgc
//
LOCUS       KCLA01001294             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21082upu ultra-conserved element locus uce-1257,
            sequence.
ACCESSION   KCLA01001294
VERSION     KCLA01001294.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21082upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-1257"
BASE COUNT          240 a          202 c          179 g          221 t
ORIGIN      
        1 gcagacaaat cccccctcga caggcagcca caaagagcag aagtgaggcc acactgactc
       61 tcgggaagat cacctcaacg cggtgcagca gcccgggccg gggcggcatc gtgatctgca
      121 tgtcttctgc acaccccagg cactgtattc cccccccccc taagcgctgg agtacggaga
      181 cgcctgtgtg tttgtcagat tcaagagtta aatattccgg gaggaatttg ttcctgcaca
      241 gcgatacata atgcctgaaa accccccgca ccaatattgc tctcaaattg gcagcaagtg
      301 aacaagggac atgaaggatg cttcagcaca gtaacctatc cttccttctc tcttgggagc
      361 cacttggcca gctttcatcc tcataattat aataaatttg acatttcata gataatattg
      421 atttctgtat tttagcattt caccataggt gacagtctag cgtcaagaat gaaatttcta
      481 ttgatctcca gcgcattaat ctctcatgtg tatgtgatca tttttataag accttttact
      541 gcacataaat caatatttca tatttccagc tatgccagag gagatgtcat atttgtaaac
      601 tgtgagttga cacctgcaat tccttcctgt tcagcttcaa ctgttcagta acagtcgatt
      661 cagggttggg aaaggatcaa gctccagaaa caagcgggat gaaaaagagg gatgtagaat
      721 acagtaatta gcctaatgaa caaagcggca gagtaagtga aataaagctc tgtttcttcg
      781 gctcgcactt gcctcatgaa tacaaacatc ttcagggagg tttgctaacc gactgataac
      841 gc
//
LOCUS       KCLA01001295            1092 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21097upu ultra-conserved element locus uce-5293,
            sequence.
ACCESSION   KCLA01001295
VERSION     KCLA01001295.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21097upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1092
                     /note="ultra-conserved element locus uce-5293"
BASE COUNT          299 a          232 c          182 g          379 t
ORIGIN      
        1 ggggctcaac tgttcttcaa gcctcattag gttcatcata tcagagtaat tccggtctgg
       61 tgttcttcct tggaagtcat cttcttgcct gacatgctgg cgagtgttca tgttttgctg
      121 ttggtttctt tcctgtgggt ttgtctcact gagtttccta gccagatcaa aacactggtt
      181 ccttaagcac tccaaactgc tgagacatac ctcttcatca ctctcctcca ccattttttc
      241 tgtaagtcca ttgttaacgg gcttccctag cattacaaag ttcatgttcc tattatcttg
      301 ctgggaagta ttgtctgcat aatttctctc attaaggttt tctgaaagca ctacaccatg
      361 tccttgtgct agcaatttaa gggagtccac tgtttcccta acaacgtcac tgtctaaatc
      421 taaactcagc tcacttttcc gaccaatagt ttcatttttg tcactatcat cttccagact
      481 attagatgta ttgctgttca tttctgattc tgtcctggct ctgtatgctg catcctctgc
      541 aattttgcca agatttaaca atgacttggc caccagttca tcgtaattat catactcatc
      601 attattgtta tcgtcttttt ctgtgtcttg cattattcga gtattgtgac aattcatttg
      661 atggtcttct gcataaaaaa cagaaacaaa gaaagaaaca aagaaagaaa aaaggaaaaa
      721 aaagaaaaaa gtggctacaa ttggaactgt agttgcaaac acatggacag aaaacaaact
      781 gcatgtcaaa tatagttaat catacagcaa ttctacagca ctaaggccca tgtgaagtga
      841 gtttctctag cgtccgtaag gttttttctg tttgtttctt attcacacga atttcttaca
      901 tagaatctat aagaaaaggc aatcaaaatg ctaatttcta gtcctgctga acgttacggc
      961 ataaatactt aggtttgtca tttcatctct atagttttat ggggtttatt acaatcgtat
     1021 tataatacca cataattgcc tatggttcca acttttctca ctcctttatc tcctggaaat
     1081 acagtagatg gc
//
LOCUS       KCLA01001296             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21113upu ultra-conserved element locus uce-6826,
            sequence.
ACCESSION   KCLA01001296
VERSION     KCLA01001296.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21113upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-6826"
BASE COUNT          245 a          190 c          176 g          275 t
ORIGIN      
        1 gcctgagtct tcatctgtat aattttctgt aattccaatt acaattaaca tctcctaaac
       61 aaggtatatt ctcaaattag agaagctgca tatgcaagaa ggatgtacct agctcgtatc
      121 accaatataa ataacctcat ctttccagag cgccaaaaac taacctctac caaatgccac
      181 tattatagca gagccttcta aacgtccctc tgttttggtt ccagccatca cttgctcatt
      241 gtcttgcact tacctaggat tttgctaatg ttggagttgt gcatgtcagg gaaggcttgg
      301 agaatttttc gacgctcgtc ctttgcccaa accatgaaag cattcattgg tcgtttgatg
      361 tgcggttcgc tactggctcg gccccgtgaa tcccggtaga ctcgagcttc agccacagtg
      421 gcacctcctg ttggccaaca ataatactgg tgtagtttag ctgcagagcc attcattgct
      481 ttacttcctg gagtgtcagg gcaggaagaa acaagatgga tgcaaaatat tattatgtgg
      541 attatgcaag tgctttcagt gctgtcttta ttttagcctc attctctttt tctctctctc
      601 tttctgctgc tagatctatg agagtgaaag gattctgtga tttcaatgtt tttgatcagg
      661 ctcacccagc tgaggatatc aacatgtgaa agaggaaaca aatagcacta ctatttctgc
      721 agttaagcta tggagatttg aaaaaaattc catttgggac tttgacagta tatgtgttct
      781 gaaagctcaa gaaagctcat gtaaaagtta cacttaagaa tccaaccgat tacgtgttca
      841 cacaagtaat tgacaatgac tttgctgcct gagcagtgaa gcacat
//
LOCUS       KCLA01001297             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21129upu ultra-conserved element locus uce-3917,
            sequence.
ACCESSION   KCLA01001297
VERSION     KCLA01001297.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21129upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-3917"
BASE COUNT          271 a          185 c          162 g          223 t
ORIGIN      
        1 agtcatgttc attacatatg ttgataggta tgaagcaaag tctctgtaga cccttcaaaa
       61 attgcacaca gccgatttaa tgcaaaccag aagtcactga cggctggatg aacattcagt
      121 ttcactccca catggatatt aatacaaagt tgggggaggg gtttcctcct ggtttattta
      181 cagttaaagg gtgggtcttg aggaatgagc atgaggccag caaaggatgg atttggttta
      241 tggaaagaca tctcccagcc tcccattctg cagccaccac agcaaaagcg cctgagttgt
      301 gtgtaacatc ctccccctct catttgcttt gcccaatttt gtctgggccc gctccaataa
      361 caacatctgc ttggcagctt ttcaaaccca tggatagtta tctaactgaa gcttttgtgc
      421 tgcactgttt attctatgtg aagaaatgcc tccttagttg aaagagtact ttagaaaagc
      481 tgtgcagcta ttagcaagtg aagcacaagg ctaataaccc ccacctgctc atcaaattaa
      541 ttatgacatc tgaatcatta taactcagaa agaacacgca actgcagact tgtcacatgt
      601 agaaataaac actcctcaca ttggaggagg gaaatacatg gcaaaaagat ccactaaaaa
      661 aaaaaccaac actccccatt ccagttatca aaaacatgca ttattaactt cccagtggca
      721 aaaacgaaag gagataagtt agcagtggat agttttttgt gcagaacaca tcactactaa
      781 cacagcaatc ttcacagcac gattgtaaat cagcatgttc tatcatgaga aatattgatg
      841 c
//
LOCUS       KCLA01001298             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21144upu ultra-conserved element locus uce-1937,
            sequence.
ACCESSION   KCLA01001298
VERSION     KCLA01001298.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21144upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-1937"
BASE COUNT          156 a          107 c          114 g          182 t
ORIGIN      
        1 ggcagtttaa tttctaacga atgcgagcgc tggattagga acaatgttcg acgaaatgct
       61 gcctgccttc tcttatggct ttcattacca aattgaaaat ctgtctagat ttctgaaaat
      121 tgcttttaaa tgcagccaat ctcctcgact gcaaggcttg atttgctggt gagggagtcc
      181 tgctgtgaga ttttaatgaa agatcatagt gcccctccaa gaccgtcaaa gagctatggg
      241 ccctaaaaaa cctgaaataa tctgttttac ttttaatggc agacatttta tattcattaa
      301 gatcaaaatg cagttttgca ggcaaattgc aaagctgttc cactcacagc ttgagaacct
      361 ggaggcccta cagcttttta tcttgttcat aagcaaatat gcagttaata tcttttaata
      421 tgctttgatg cttgctacct tatgggtaca ttgtactgga ggttagagaa ctgcatgttt
      481 ctttggcagt gctagcaacg agctgaagca tgagcccttt tatttctata atggcagaag
      541 aaatgagtat ttttttccc
//
LOCUS       KCLA01001299             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21159upu ultra-conserved element locus uce-7084,
            sequence.
ACCESSION   KCLA01001299
VERSION     KCLA01001299.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21159upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-7084"
BASE COUNT          329 a          176 c          172 g          246 t
ORIGIN      
        1 tcacaaatga ggcaaatgcc ttaattctaa gcagtgtcaa gcagatttga aagtgaaatt
       61 tgaagagcat ttatctcccc atcaatggga agaatttatc ctattaccca tcgcagccac
      121 tgacaagaat cagtcctgta aatctccaaa gaaaagcaga cccatctgaa actttccgta
      181 tcacctttaa tccaagtcac acagaactgc atgacaactg ttacagtgag actattgcac
      241 attggaagga aaataattga tatactgaaa gaaagccaaa gacttaattt aaaaagcaaa
      301 ccaaaaaatt attcatacca cagagttaag aagaccttgc ccctggattt gtttgcagtg
      361 ctttgcttaa ggtttaattc tattgattac acattccatt ttccaaagtg ccatttgcct
      421 gaaggagcag gtggtgtttg ctgtttccat ttaactgata tattagccat gtggtgcact
      481 gcatcagtgg gcagtattaa tcaatttacg gcaagatgac agagagaatc actcacagca
      541 aaattgcaag ggggaaaaaa aggacaaaag caggaaaata atgaccacta atggggaact
      601 tgaaaacact ggaaaaaaaa aataaatccg tgcttttaat acttctcttt catagcaaat
      661 ggaattggaa gaatttagga gcagccagta tttgaaagga gacaaatagc actacggtca
      721 gtgcagtact ttttgtaagc actttacggt ttggcattgt gcaacgaata cacaaagatc
      781 tcaggtactt gctcagaaac ttagatttcc cttaaatgaa agcaaagtac atcctagaaa
      841 atcaaatctg gcacacgtcc tcttggaaga tctactaaga ttcaacatgt gaaaaccgtt
      901 tctgtgctat acagttattc aca
//
LOCUS       KCLA01001300             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21174upu ultra-conserved element locus uce-6177,
            sequence.
ACCESSION   KCLA01001300
VERSION     KCLA01001300.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21174upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-6177"
BASE COUNT          275 a          171 c          195 g          287 t
ORIGIN      
        1 gctttataaa tcgtgcagag aaatcttgag gggtagaaat tgaaatagat gtgaagacat
       61 cccccgattc tgtagcctgt cactgatcta atttgaaccc atctgctaac agaggctgct
      121 tcagaactgt ataaatgtca gataagacca ccggcgagtg aaggggaaga agctgaatgc
      181 tgcctgtctt ctcgaacgac tgcggatctc gtacgagttc gttacacaag tgaatgttcc
      241 accagacgga tgtttatttt aatccagcaa agtttcttta gtggagatgt ccaccgtttg
      301 gaacaaaacc cctccaaagt gattatgcca ccttattgct tagatatcct catatatttc
      361 ttgttattct agttgagtac tacattcaga cagaggttgc caataaagtt tattgtagga
      421 gctaagtgtc aatatctgta gtaccccccg cctagggtgc ttgtaattaa aatgccacag
      481 atagtctggg agaagcatga aaatttgatg gcaaattgat ttcaggttca tcttgaaatt
      541 tgtcctcagc tggactcaat actgctggca gacattggat ggcttttgtc aaaagggttt
      601 gctgggatga gacagagatg ccttggtctg aatattaaat acagggctct gcttatgaca
      661 gtttgctcac tgttcatgcg gtcctatata tgttttggtg tattttttta cttcagaaaa
      721 tacattgatt acaaatattt tggcactctt aaaagcttct aacctaaaca cagcttcaaa
      781 acttcttgag tctgtagcta ttccaaggtg aagctgagct gcacaaagca aatgactctg
      841 acaatgtcat agatacaatt tgtgtcagtg acagtgttgg aggagaaaaa tcctatataa
      901 attattttat ttaaaagaaa taaccttt
//
LOCUS       KCLA01001301             546 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21188upu ultra-conserved element locus uce-6550,
            sequence.
ACCESSION   KCLA01001301
VERSION     KCLA01001301.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 546)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..546
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>546
                     /note="ultra-conserved element locus uce-6550"
BASE COUNT          159 a           98 c          117 g          172 t
ORIGIN      
        1 caagataata gtcaagcttc atgccaagca gctttcctcc aagtgaatta tattttgaaa
       61 ggctggtcaa aacatacctg tgacgtaata agtttttaag gagcacaaga tcctggtctg
      121 ggtttgaaag aagacccaat ttataaccca attaggaaga aagcgctttc aggcttgtgg
      181 aattctcaga gagactctcg aaaagccagt cctgcttgaa catctgtttc cagtgtgatg
      241 ctggtatgca aactattgtc tattggaagt gtgttgtggt aatgtttgcc agggttaaag
      301 actgggtcaa tttgatcaag aagctaaaat tagcttctgt gtgttttcct gaaaagaaat
      361 aataaactgt aaagcttttt gttttccttc aaatcttgtt ctctggttta cgtttggctg
      421 tgtgagctac tataaagaag atggttcccc ttgcttgttc tctcattcat cacaaatgtt
      481 taaaactgac ggaggccttc aaaatcccta cggatgcaaa gacacagagt gattgtagtt
      541 actgac
//
LOCUS       KCLA01001302             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21204upu ultra-conserved element locus uce-3086,
            sequence.
ACCESSION   KCLA01001302
VERSION     KCLA01001302.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21204upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-3086"
BASE COUNT          232 a          164 c          237 g          258 t
ORIGIN      
        1 gcctaggcag ttaggtaccg tgagggctag ctgaagttct gtgacctggt gcgatgcact
       61 gaaggggatt agtttcttcc agggtcctgc tctttcctga tttacctttt ggttaatgtt
      121 cctccaaagg gggtccagct tctcaccagc ttctacgaag aggccccaca agtaatatta
      181 acttctgcaa tttcctcgtt actcttgagc aagttattaa ttaactgaat gtaatcactg
      241 gctgctgata aatcctttta actaattcaa attccaaatc aagctccaag tgtttttgct
      301 ggggctgctg ctgagctttg tgaagaattg gatttttgag tgccagagtt agagggggag
      361 cggagagaag atatttgttt gcttgattcc acatgacaac tccagggtaa ctgagcagac
      421 catacggttg gtttgacaag gctgtgcacc gagccagcca cataccagag acagggggat
      481 ggaagggaca ctgacagctc tcatggattt catcagcatc ttgagagaga gtgacgacgg
      541 gccttcaatt attaatgtct ttgagaggtt tccctttgga gaggtatgaa taactaactt
      601 aaatatgcat ttgtgtaaca cactcaagaa tgaataaatt actgtgtgga aagaagtgga
      661 gttgcagctc caagtattaa ataatggaag aggggattgg gtgtgtagga aagcctctag
      721 cagcacatac tgttctttga gggctggagc tgtggttgtt atgtataaat gtatgatgat
      781 gctgtttgtg aggaaagctg taagatgtct tgaaaacaaa gcagagcctg agttttgggg
      841 tcggtgacag ccctatgtga ctcctgggtg tgcttgactc atcccagggc t
//
LOCUS       KCLA01001303            1074 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21219upu ultra-conserved element locus uce-3698,
            sequence.
ACCESSION   KCLA01001303
VERSION     KCLA01001303.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21219upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1074
                     /note="ultra-conserved element locus uce-3698"
BASE COUNT          220 a          231 c          241 g          382 t
ORIGIN      
        1 ctgggctgcc atgcctgaga acttcctatg ataggatgca agaaaaggct cagccatcaa
       61 accacctgtg aatcccttgt gtcctctgtc ttgtctctca tggtctcagt ctctgtgagt
      121 agacattagc cctggagcca tttctggagt cattctgctg gggagggaga ttgccgtact
      181 cttctcctaa gcagagctag tggaaatatg ctgtagggca gatgctagtt agctaatgtg
      241 ccacaggacg cagaccaggg ctgcaggagg atgccctggc ctctgcttcc atttgattct
      301 ggcagtttga cgtttactta atgtccttca tgtactttga cttttacttg tccattgttg
      361 gcatgtgctg cccttccctg tcaactccct tccccaggag atctcatcgt atggtgccat
      421 tcttgttctc tctctctgtg tttggatgta cagctctgtg taactcagtg ggtctccctc
      481 tttctggttt gttttttttc tagattcctg ccgtttgttc atcgttgtgc ctaaagcatg
      541 tcgatgtggc gttcaagtac atcgtccaaa tccttgtctc ttcagcttct ctgatgcttg
      601 aactctcacc tttgaccttg tgttgacctt tgatgctgat gtgtattttt attacgtttg
      661 tttcttcttt ttttttgtgc tgccaaattg gttttgctag aaagactgct gaaggggaat
      721 atttaaattt gcatttgaat ataaaagaac ctctattttt ctagaccttg gtaagataac
      781 cacttgattt tgtgaatctg acgctttgta attgtcttca gagcagcctt gctagcagac
      841 cttgtggagt atttgtattc ctgtgaacat acagccaatc actttctagg cttaggtgtg
      901 cttagtttta aatacacagt tttgaagaag tctgttatat ggtgtgactc aatctttcag
      961 gagacttcct ggtcacattt tgctgatctg gtttctgtgc ttgaggaggc agcatgtttt
     1021 tatgaggtca aaactgtgac ttgagtggca tcagcagaaa acacttgaac tgcg
//
LOCUS       KCLA01001304             976 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21234upu ultra-conserved element locus uce-2417,
            sequence.
ACCESSION   KCLA01001304
VERSION     KCLA01001304.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>976
                     /note="ultra-conserved element locus uce-2417"
BASE COUNT          299 a          194 c          227 g          256 t
ORIGIN      
        1 ggtgctgata gtgtgtgagt aaaggtccac acgttataca atttcaaggg aacacaggaa
       61 ggtttctctt ggaataataa acagggcact agttgatagg gaaggaaaat ctcacaatcc
      121 ccttgcaaaa ccaagcatcg tctgtactgc attctggcaa ataataagca ttaatgccct
      181 taaacaatgc acgctttaag aaaaaggatg gatggatgga gggaggggag gtttgtaaat
      241 attgcccaca aatcattcac tacttctttc acagtgcagt attaaagcca gactaaatta
      301 gcagtccact tcccccgctc tccttcccac tcaagtcatg tctgtttacc ctcagcaatg
      361 acaaaacgta gacaactgtc tgctaggact gtggtgacat tggcacacac ataccagaca
      421 agcagaatgt tgtgggaaac agagattgaa gcatcttgat atatgagaaa caattatcat
      481 gggaattgtt gtttctcaat gcaacagcta taataaatag ttgccatatg ctaagcacag
      541 atgccttctt gaaaagcagc cctgggatgg cacagcccat gttcttcaga gtctgggact
      601 tggatgaaat gattggcttt ttgcaagcag ctcggctgcc ccaaggaaag gtagctcagg
      661 ccactgaaga gcttaggagg ggaaaaaaag gcttagtaac agctttgggt tttgctggtg
      721 ggttttgtag gagaatctga agccagtctc ttcgatcagt gagagaaact ggggtacttc
      781 ttggtaactt ggacttcacc tctgctggct tctcaacaaa acataaatgg agtgacaaga
      841 aaaccttttt tgagaagaaa tactaattgt ctgtcttaaa gagaaattag acctataaga
      901 ggttttagtg taccccaagg gtctcaggct ttgtctcatt tcaggactta caggtggaat
      961 gcttcacaga cacgca
//
LOCUS       KCLA01001305             995 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21250upu ultra-conserved element locus uce-2538,
            sequence.
ACCESSION   KCLA01001305
VERSION     KCLA01001305.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21250upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>995
                     /note="ultra-conserved element locus uce-2538"
BASE COUNT          264 a          228 c          209 g          294 t
ORIGIN      
        1 atttttgtct tttgattttc aagtattaaa aacagttttt attagaacca aagtttacat
       61 gactactcag atcatttaaa aggcagatgt cattatctgc gtttaccatg ctgtggtttg
      121 gagagcattt cagcacaaat ttttttaaag ttaactctct ttcttgctcc atctagtaat
      181 aaaaactgca tccattgttg ctaacagcag aagtctatac actgcagtag taatagcagc
      241 caaaagcaat ctgaaaagtc ttactatata attatgtgct catgaacaat ttcagctacc
      301 cttttcctgc catccatatg cccctgtcca cttaaaatta taatttttac ttgcctgttg
      361 cagtcccact gtcgctctgc agcagtgctc ctgtcactgg ttgtgcgttg tttgggtttg
      421 ctcctggtgc tgtcggagga ggaggccctg ctccaccccc aaggagcata caggatggtg
      481 gagggggctg cccacgtttc agtaacactt tgtggtcctg ctggcaacgg aatcgcggcg
      541 gcacctcccg aggcatgtag cgggcggcgc ttggcggttg tccgttcggc actgccaccc
      601 ttttggcatt gttgccacca ttgactggtg gcgatggaga gttgccaagt gggctggcag
      661 ccactggttg gcttaaactt ggtttcgtca cttcgggcac tgaaaaacag caagaatgaa
      721 aatcagaagt ttttccactt aaatctatgt tagtcccaag aattcaccac aactccttac
      781 aatttaattc ttctctgaaa tgctgtgcaa cttcaaccat atcaaagaaa aaacaggaat
      841 aagcagagac agtaaacctc ttgcttccat gagcaactct gtatccaggg ttgaaactgc
      901 cctcagcaag tactttgctt taagtcccaa ctttgttgga aatttaaagc tggcaaagaa
      961 tactctgggc aacaagacat tttcaaatat gagca
//
LOCUS       KCLA01001306             551 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21266upu ultra-conserved element locus uce-4334,
            sequence.
ACCESSION   KCLA01001306
VERSION     KCLA01001306.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 551)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..551
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21266upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>551
                     /note="ultra-conserved element locus uce-4334"
BASE COUNT          162 a          119 c          105 g          165 t
ORIGIN      
        1 ggcttctttc tcagattctt gaaatttgat cacagtgcaa aattgtcctt tggcgcaaac
       61 ccagaaatcc acatctttgc atgatgcacc tggacatatg tggcaggtct ggtagaatca
      121 gctaattaac aacacaggct taaacaggca cctcatctgg cagtgtagtt agttgcctga
      181 tggtgctcag caggatttgg tagtgctttt tatttttcta tcctaatggt ctgctgccca
      241 cctaattttg ccttattgtc agccactact taccacagct tgaggccctc ccaggaggct
      301 aaattattat caaaggatta gggagatgta gccttgcagc tctgacattt ctgattactt
      361 gtctatgcca gaacactaat tagctgtgac taattaagaa aaatgttcct gccatagaaa
      421 accatttaaa agaaccgaga actagaaaag caattgaaaa gctgagcagg gctcagattt
      481 gctaatgctc cttagatttt caccaaagcc ttaactcacc tttaattatg cctaatattt
      541 cataggaaaa a
//
LOCUS       KCLA01001307            1056 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21281upu ultra-conserved element locus uce-1366,
            sequence.
ACCESSION   KCLA01001307
VERSION     KCLA01001307.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1056)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1056)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1056
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21281upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1056
                     /note="ultra-conserved element locus uce-1366"
BASE COUNT          346 a          214 c          212 g          284 t
ORIGIN      
        1 ttgtgaaata tatccacggg ctgagaaatt caacacagga agtctcagag atggccaata
       61 atgactaatt gtaaataata aaatagtgaa gtattaaata gcagaatggt aactagagat
      121 ggaagaaacc cagtgtgccc ctcttaagtg acaatatatt caggcagacc caagcaaggt
      181 aaaggaacac aaaacccacc ataaattcct aaaataaaga cacaggcgtc cacgcctgtg
      241 tatcctgatt ccctggtttt gttattaaac accagctccc ctgcacacgg ccacgcaccg
      301 gagggaattt acccacaagt gtgtattttc tggaggaagc tgttgctttt gctccggtaa
      361 ttgttacaag aaaagcacca gaaattttga gataacatat tgtttctcca taacagcttc
      421 aaacttttac ccagatgctt ggttttcttc tgctttatag cagaacaaac tccccatttt
      481 tcataagacc tgatgtatat tgtgcttttg actagtccat aactcagact aaagcataca
      541 ggcacttttc tacactctgt tttctcatga aagagagaac cttgcaagct gcagcaccag
      601 agcgagaaag aggtagagac aatttatgat tcagtgacat aggcagaagg tgtgatttat
      661 agtttaattt gctgtcgtaa tggacagagg ataataacat gtaaaatatt aatcaatgtg
      721 tagcaacagc agacatcatt tgctaagctt gttatctgct gctctacccc tgacagtgaa
      781 caattaaact gacaccagaa aaacaagaga aaatgcatga ggcaatgcca gggcaaaaaa
      841 agcagaagca tcccaaggcc accgaaaatt aacaaataaa gacactgaga tatttttata
      901 atttatcttg cgacccaatc tggcattatt tgagagcctt ccttttgttt ctgaggcggg
      961 cggcttcctg aaggttacta attttgcagc aaggtgctcc gatgatgtta aggtatgaag
     1021 ctgcgcctgg catttacata cggcaacgat ctgttt
//
LOCUS       KCLA01001308             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21297upu ultra-conserved element locus uce-3065,
            sequence.
ACCESSION   KCLA01001308
VERSION     KCLA01001308.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21297upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-3065"
BASE COUNT          287 a          187 c          235 g          271 t
ORIGIN      
        1 ggcctcactg tagtcacttc catgatttag agttgtgcca gatgagccta gagactggcg
       61 tggatgtgtt ttgatagaaa tgtagtagaa ttaattttaa cttagatgat ctactttaga
      121 cttggagttt ggattgccgt tacgaaagtt gagctatggc aacttaaacc ctaaaaaggt
      181 ttagtcatct acatttaatt tactacatga actttgactt ccatactaaa taaagagatg
      241 gtgcttcaag attgtttccc tggctcatgc acaagacgct ctttacaagt agtggagtgc
      301 ttgcagttac ttctcctctt tgtgttttgc tgtccgctaa atgtacgttg atggaaactg
      361 ctgtcactag aaacacctta catattgcac ccaaagtata atgctttttg aggttgctgc
      421 tcccatcagt ctgctcagta aaaatagctc atcttggtaa gttgtttcga cttcaccagg
      481 acctgaagaa gaggcagaaa aacctgtgaa aactaagact gtttcttcca gtaatggagg
      541 agaaagttcg agtcgcagcg cagagaaacg ggcagctaat gaagaagccg aagacttcag
      601 cgcaaagcct gctcctgcca aaatgtccaa gtttggattt tccataggca gtcagacaac
      661 aaagaaggca tctgcgatat ccatcaaact aggagcaaat gtaagttacc tgaggtcgtt
      721 tcaatttggg ggaagtgctt tggggaggct tcctcgcaga aggaacgccg ggaggttagc
      781 gcagataggg tctaacaaag cactaagtac ttccaggtga tgaatactag gccagttgcc
      841 tcaggaaggg caagacttga ttgaaatgaa ctgcagggtt tgaaacagac gggataattt
      901 tgtactgaga tttgatgaat ccagagtaac ttcctgaggg aaacgagcag acttgttaaa
      961 ctcttcaggt tgctctgaaa
//
LOCUS       KCLA01001309             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21312upu ultra-conserved element locus uce-7797,
            sequence.
ACCESSION   KCLA01001309
VERSION     KCLA01001309.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21312upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-7797"
BASE COUNT          242 a          126 c          137 g          300 t
ORIGIN      
        1 ttttgtagca ttgataacca ggagaagcca ttaaaagctg ctggttattt tatttttcat
       61 caggcagttt tcaagttcct tatttgttct gtattgggtt tttacactgt ggtacatata
      121 tgcaattttg tttaatagct tggaagtgta cagtagttag ccttcattct cttcgtctca
      181 tatatgtttt tccactttat gcttgttgct cttcagaaaa atgctttttg aattatatca
      241 attttatgtc tactgtaaac cttgcgtaac attttttttc tcagtttaaa aaattgggtt
      301 aaaaaatgct attgaatatt gcaatctata tagtgtaatg gatggcttct ttcatcagac
      361 taatcttctg tgttaccagt gtggattatc accttttccc taaagtgtac ttaatctttg
      421 ctttctttgc acaatgtctt tggttgcaag tcataagcct gaggcaaata aaattccagt
      481 aattttaaag aatatggtct tggtgctttc ctaataagag ataattagct cagtagatgt
      541 ggccttctgt tacaagttcc acaaaatctt tttctaatgg ggatgagaga gcctgagtat
      601 ctcctaaaga gaggtccact attgtctgtc ttgtaaaata agaactcatt caaataccat
      661 aaaattatct tcatagatgg agagcagata tgcaatacct gttaaaataa taataacatt
      721 gaagtagtac aataatacct tgaagtgtaa gtgtagttca ttacctaatc acagttgaag
      781 tgattaagca gtaaagaaaa cccat
//
LOCUS       KCLA01001310             907 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21328upu ultra-conserved element locus uce-888,
            sequence.
ACCESSION   KCLA01001310
VERSION     KCLA01001310.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21328upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>907
                     /note="ultra-conserved element locus uce-888"
BASE COUNT          243 a          203 c          220 g          241 t
ORIGIN      
        1 gggacagaaa tgggggtaaa taaccttttt gacaaagagg aaacaaaacg aggcagctct
       61 taactgtgaa gggattagga tgcagaacca gtgtggaggt gctttttacg tgtctgggtt
      121 attctagctg caagaaaggg gaaatggtat tttaaaaacc catttaatta aatgacaaca
      181 cttgggattt catttagttt gcattacagg aggaatttag acttccactg ctaccacctg
      241 ctgccaggct gagctgtgag cgtcatcgct gcgtctcacc gatgcaggtg aacttaccgc
      301 cgaaccactt tcacagtcca gaaagcatga cattccttgt taccagtggg aggaaaggct
      361 aattgagaag tgtgtataaa agctgtaatg agtagcattt acatgtattg attagaagta
      421 gggccaccgt ctctcattta tcaccaccag cagctgtgaa attttcccca cgtcgattgg
      481 cacggctcat attcccgctc ctctggttct ttattgcttt ttcccaccct gaaccagagt
      541 gctgatccac cagctggaat gggctggtaa ttgctccagc ttctccacca gctgccacaa
      601 ttgccaaatc gctggagtga aaaattccat cctgcatttc cgattttttt acattaccac
      661 tgcgtaatca tatttgacga ataattaacc tgggttaata cttcagggag ccatttgcaa
      721 gtaaattgat aagctgagtg ctgtacaggc gcatgagggc taaagccttt aggaagcggc
      781 acacaacagc ccgccggctg tgctggtttc acatcctgac catcttaatt aggagtgggc
      841 tgagggtgct gtcctcaagc cttcttaaac cacccctggc tgaggaggag ggagagggtg
      901 gcaaaga
//
LOCUS       KCLA01001311             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21343upu ultra-conserved element locus uce-29,
            sequence.
ACCESSION   KCLA01001311
VERSION     KCLA01001311.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21343upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-29"
BASE COUNT          111 a           84 c           91 g          109 t
ORIGIN      
        1 gatttcctat cgctctaact cgatctttta tctcccaaat agtttcaact gtgttaatgt
       61 gtgcatgtac ttttttttta tttcttatca ggctctcggc agcatttgtg attcatagca
      121 gtcatcaaag tgataataaa ctcattcaca atactaacaa acatggggct cccagttatt
      181 tacgaggcaa attcactgca atgctgggca gtggaacagg ggagaatcaa gatggtgttg
      241 attgataaat tgacaggtta atttacaagt ggataatagg agttagaccc agagggagcg
      301 gctgcagctc cagcactcgc ttggctgcag tgccatctgt ctggggccgg ggaatctgca
      361 ggagcgtaca gacacagaca cacagacaca cacac
//
LOCUS       KCLA01001312             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21359upu ultra-conserved element locus uce-575,
            sequence.
ACCESSION   KCLA01001312
VERSION     KCLA01001312.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21359upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-575"
BASE COUNT          125 a           65 c           70 g          103 t
ORIGIN      
        1 catgaaccag aacgactggg tttgaacggc atagcagaga caacagtagc catggaagtg
       61 acataacctc agagcagcgt ctccgcctgt gctctcggcg cggtcgtttc tattccaacc
      121 gaatgcaaaa tgcagcactc tgtggatcac agagacctaa aatggaccta aacggactat
      181 ggttatatcg tgtattaagt cgatatataa tgtaaatttt gtaaaattgg gaaaatcact
      241 accttgtaaa atagtttatt tgtatcatca atattatttc tgttacttga atagtagata
      301 ttcatcatca tgcttttgca cttgaatttg caactgaatg gattaaaaag aaaaaaaaaa
      361 aaa
//
LOCUS       KCLA01001313             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21375upu ultra-conserved element locus uce-7996,
            sequence.
ACCESSION   KCLA01001313
VERSION     KCLA01001313.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21375upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-7996"
BASE COUNT          238 a          189 c          193 g          239 t
ORIGIN      
        1 gctaaagaag gatgctcttt attaatcctg taagttagcc tatttgtgaa tgatgtctgc
       61 aactatattt tgatttatct cctcaaacct cctttgaagt tcaggagatt ttttttattt
      121 gatttattat tattcctgta gtagcagaag cccatagtgt tgttgagagc tttgtcctta
      181 tttcacagat gcactgggaa ttgtttttaa tctcctttct gctttcccat tacagatggt
      241 gatgacgacc cacaactctc ctgggtggct tcatctccct ccagcaaaga tgttgcatca
      301 cccactcaga tgataggaga tgggtgtgat ctcggcatcg gggaggagga aggggggact
      361 ggcctgccgt atccctgtca gttttgtgat aagtccttca ttcgcctgag ctaccttaaa
      421 aggcatgagc agatccacag tgacaaacta cctttcaaat gcacctactg tagccggctt
      481 tttaagcaca agaggagtag ggatcgccac ataaagcttc acacggggga taaaaagtac
      541 cattgccacg agtgcgaggc tgcattctct cgcagcgatc acctcaaaat ccacctgaaa
      601 acccacagct ccagcaaacc cttcaagtgt actgtgtgta aacgtgggtt ttcatctacc
      661 agctcattgc agagtcacat gcaagctcat aaaaagaaca aggaacatat ggcaaagact
      721 gagaaagagg tgaagaagga tgattttatg tgtgattact gtgaagagac attcagtcag
      781 actgaagatt tggagaagca cgtaatgaca cgccacccac agctttccga gaaggcagat
      841 ttgcagtgta ttcattgcc
//
LOCUS       KCLA01001314             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21390upu ultra-conserved element locus uce-5024,
            sequence.
ACCESSION   KCLA01001314
VERSION     KCLA01001314.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21390upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-5024"
BASE COUNT          281 a          189 c          198 g          325 t
ORIGIN      
        1 tttggcttag gtttgtgtgg tctaatggcg atttaataga agattagaat atcgtataca
       61 gttgtctcca gcagcgtgac tgttggaaca gttttgttag tggacttgag ctgggaggcc
      121 tcagaacttt gggggattct tgttattgtt tgagtttccc agagtcttct tcagctctct
      181 ggttgcaatt taatttccat tgtattcact ctgctataga aatacttaat gtcaggaagg
      241 agatatttac tggaatacac aagtccagaa ttcatcatga ttcagtgtga aatcctctcg
      301 ccctttgctc cccaccccct cttgaattgg aatgaaatgt gccttaaact gaagtgaaat
      361 acatcacatg cagcaacagt gggcccttgc ttcgcctcta ttcctggtgt gaaatcgata
      421 cactatcttt cctcctgacc tgttctgtga cctccattgc agctttcatg ctgaacagca
      481 attgctttga acagtctggg tctgccacag ctcacaaatg attctcagct tctgtctaaa
      541 actggtgctg ataacaaagg cttcatttta aataatgcag ttgtactcat cttctaatta
      601 tgaattacat gaaagtgcat ggtcttctat tattaaccgt tttcaatagc atgtacagta
      661 tgtatgcagc aggaataata cctcgctgag gcgatgcagg agttctgttc ctgaatgtct
      721 gataaagttt atgttgttac ggaagaggag agatgtagca aatacttctg aagtattttt
      781 aagcagaaac actttctctg actttatcac tggctaatat agtacaatta tattttgcta
      841 acattcgaat tttcaaagga aggggacagt tcttgaacta agatgtttaa aagctgctgc
      901 aaaactaagc aaaacataat ccttagctta aaaagaaaac cactttgcgt tcctgattac
      961 taatagtgat tcaggaaata gcagcatttt gaa
//
LOCUS       KCLA01001315             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21405upu ultra-conserved element locus uce-171,
            sequence.
ACCESSION   KCLA01001315
VERSION     KCLA01001315.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21405upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-171"
BASE COUNT          233 a          196 c          184 g          133 t
ORIGIN      
        1 ccagggatgg agactaggtc atggtgatgc tctacggcgc aagaccagcc acccgtgcaa
       61 caggggcata acggcctgag taacccacac aaagcgcatc gacacgtgtc catgcacacc
      121 gcaaacacac gcacctgtac acgtaccggc cacgcctgtc ccaagacaaa ctggagaagc
      181 tctgtccctc ttcacagact ctccccggct gaaacccgtg cttttaagta gaaagcgagg
      241 caaagccata actcccaggc cactaatatt gctattgaga tgtcttcatg ttgccataat
      301 aaggggagat ttcaaagtgg cacaacccag accaacacca aggcgaaaat aactcggagg
      361 agcaggcgag ctgcttttgc agccctcagt cccagaaatg ctcggtagct tttcttaaaa
      421 tagacagcct gtaaataagg tctgtgaact caattgaagg tggctgtttc tgaattagtc
      481 agccctcaca aggctctcgg cctacatgct agtacataaa ttgtccactt taccaccaga
      541 caagaaagat tagagtaata aacacggggc attagctcag ctagagaaac accccagccg
      601 ttacgcacac gcgggattgc caagaactgt taacccaact ctccagaaac gcacacaaaa
      661 aaacaagtta aagccatgac atcatgggaa cgagagggag agagggaagg agggagagag
      721 ggcacccgtg gaagggggga aggaga
//
LOCUS       KCLA01001316             834 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21421upu ultra-conserved element locus uce-7586,
            sequence.
ACCESSION   KCLA01001316
VERSION     KCLA01001316.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21421upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>834
                     /note="ultra-conserved element locus uce-7586"
BASE COUNT          270 a          141 c          204 g          219 t
ORIGIN      
        1 tctttttgca aatgccaagt tttaaaatcg aactgccaaa cctaacaaat atgcaggatg
       61 aatgaaaaat tctttcagct tggagggata agactttacg caaatgggag gcaacgtggg
      121 ttaaaattca ccttgcttct cactcctcat ctatgatggg tgtttggaga acgacggaca
      181 tctggaaatc agttttacat agaaaaattg aaaacaggga agaactagaa gatgaataaa
      241 ggctcatcac agacacaaaa gaccagagca aaaagaagct tggatttggg tattcttgtc
      301 tggcaaggag gcaggcagta aggctaatga agcatttgcg atatgggacg tatgccagcg
      361 taacaaagaa gatgtgcatc agctctgcag atgtgccaaa gcccccagag caaaataatg
      421 acataatcac catcagtgtc acagaccaga ctgtacacaa ggtgacatgg gagagaataa
      481 ataagagtct ttagaggcct gtagcacaca cacgggaagg aatagccatt cctcacaacg
      541 gccataggag agtggcgaga tgttgggtat aatacgtaca gctagcaaaa gaaatcttga
      601 attgtgcaag gctaacaccc tataaattgg tgcttttctc gatctacagt tgacgtttca
      661 attcccacta ccccttgttg aatgcaaaat gaaatggcag taggagtcag aagactttgc
      721 caagttttgt tttggtttgg ttttgtcggt ttctttttat ttgttgtttt ggaacagggt
      781 tgttttattt gagaagaggt tggggtaata aggaggagta tgggtaaata attg
//
LOCUS       KCLA01001317             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21435upu ultra-conserved element locus uce-3696,
            sequence.
ACCESSION   KCLA01001317
VERSION     KCLA01001317.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21435upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-3696"
BASE COUNT          219 a          143 c          160 g          244 t
ORIGIN      
        1 tgcaatgttt gatggagcca tcagcagcaa aaatatttaa tcccccctga acaatgcatt
       61 ctttttactt tgtggaactg attagcttcc taaagatgtg accatgaaaa gtttggattg
      121 tttctctgtt aaatcagata tgcctcctac ctttttacaa tgcttccttt agaaattaat
      181 tgttctgtgg ttatttgtta aagaatctcc cccacgtgaa aagcaaaacc tcagtagatg
      241 tgggttttac actgcactag atcaatccca ataccagtaa atggatatta ttaaacagca
      301 tggggtagtg caaactggga aagaaaactt gtagtgtgct gcctttgagc agacctggct
      361 tgcatgctgt gacagggcaa ttgtcgacat gctttttcat gccaatctgc agctttttca
      421 actctagatg ctatggcaac cagggtttaa cagactaagc agctaacaag cttccctgat
      481 ggaattgtct ggttgtatga ttgccttgtc ttagtgaaaa tataaaatag actgaagatg
      541 cttgtggaca tttgtcaaac tgattataat ttggacactc agctcataat tatccgttat
      601 atattgcata gtattgacca gcaacgtttt ccatgctgtc tgcagagaac acaagtgcct
      661 ttctgtacag cctgtttcct gtgggaagaa tgggttttgg ttaggctgag ttggtcaaca
      721 tggcaggtga gattatttgg atataacaaa aaatgccact agctga
//
LOCUS       KCLA01001318             298 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21449upu ultra-conserved element locus uce-2498,
            sequence.
ACCESSION   KCLA01001318
VERSION     KCLA01001318.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 298)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..298
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>298
                     /note="ultra-conserved element locus uce-2498"
BASE COUNT           85 a           57 c           88 g           68 t
ORIGIN      
        1 gggggcggcg gatgctcggg ctgaatagcg ctgtctgcag aacaatggca gccaattcca
       61 aatcctgcca taatcacatt aatgagatta atcagcgaat tagcagcagt caaatgtcag
      121 ggtggcaggg aggaatccaa ccaagctcgg taattaactt ttggggggca ggggaaagaa
      181 accaactcta ttatcggtta ggcttttccc gaagtttacc aggttttatt tggcaatctt
      241 tagaagatgc tgacagttca agtggagggg gaggaagggg tgagactgag acctcaac
//
LOCUS       KCLA01001319             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21465upu ultra-conserved element locus uce-418,
            sequence.
ACCESSION   KCLA01001319
VERSION     KCLA01001319.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21465upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-418"
BASE COUNT          278 a          189 c          165 g          261 t
ORIGIN      
        1 gcctcctcac cgacatttgc tttggaaatt tcaagctaac tcccaaggaa acctcatttg
       61 ttttctttat agtaggtctt tcaaaagaga gtcagaactg atggattaca acatgtttct
      121 acctttgcaa tctgaatttc ataagagtaa aataaaccgc aaatgaaagt gcttgtagca
      181 ggcacgtcga acctttcttc ttctattagc atatcagtct gcaatcataa ctagatcaat
      241 agcgaagata tctgcttaaa agagcaccat gctttctttt gtcagaaatt cattactttt
      301 tattagggtc attgcttgaa aacttcaaaa caccatatgg acctaattgt ggtttatttt
      361 ggcaaaaagg aagacactgt agaacaattg aggcattaca ttctacaatt ccattacttt
      421 catccctctc cgttttatta ctgtgtcatt aaaggcaact tgagtgagcg aagaattata
      481 gtgtcatgtg tacgggctag tagattaata acaaaacaca ctcaagttta aaggtatcta
      541 acagctgttt tcattatttt gtgtaaatac gcttgaagca tatctatctg attagtggat
      601 agagtgctct tctctgtcac atgccatggg cactgctatg tgcaagtaat caaagtgctc
      661 agaaaatgag tttacattgt tcactgccga aatacacaaa tgtcagaaag tgactgcgca
      721 tcaaagcgca ggcaaatcat ctgccgcaaa caaacagact ccaatacaca tcgcggccta
      781 aaagcgctcc tccgcagcgc agcgggactt attgccagcc caaatgaagg gacgctctcg
      841 gaatattaag ttgccggcaa gttcagcacc tctaaaaaaa gctcggctgc ttt
//
LOCUS       KCLA01001320             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21480upu ultra-conserved element locus uce-188,
            sequence.
ACCESSION   KCLA01001320
VERSION     KCLA01001320.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21480upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-188"
BASE COUNT          310 a          201 c          170 g          299 t
ORIGIN      
        1 ttttttgcgt ggtctgtttc cgcagatcag aatatttctt aaccactctc ttgatgtcat
       61 ggagatttaa ttaagaaagc ctagataaac taacagtaaa gatgttcgaa gctcctgcac
      121 agaaaacttt taggacataa tggttaactg ttattctttg aatcataggg ccaattatca
      181 atttttaacc ctcaaaactc tttatagtga tttcttgttc tggaagtaaa atgaatgatt
      241 gggttttgtt gcaggtaata gggctaagtt atgaatgctg atggccttct tgtacaacct
      301 taaattacat tgaaaaagat acagtttctt taattaaaaa agctgcactg aactaatccc
      361 tctagctgaa aaaagaaaag ttttaagcaa tctctttctg ctctgggaga gaaaagcaga
      421 caataccata acagatcaga aacataagct atagtgtgca gccaggagca cagcagggaa
      481 ctgaatactg ctccgactgt gtcatttttt aatcccccat cccagttttc cccgtctgac
      541 ctcatgctga gatgaagtta tcacagaaga cagctttact ctcaccaatg aatccaaccc
      601 tggatctgta ttatcctcag cagatcaaaa caccgctttc atcaaatagc attatctgca
      661 taaaaggcat gcaattgccc gataatttca cccaaactat gctattcatt taaaggacaa
      721 gaagagaaat gtaattcatt ccttttttcc ccctggaaaa gctaacttat acttcactca
      781 tgggaacttt tctgttttta acacaagatc tcaagaagag gtccattaaa agtttccccc
      841 tggtttacaa ttaattgtta gagtacccct gtgccacttg agtgacataa gtgtagttat
      901 gcagaaaact gtcagggaga attcacaaag cttgctgtag ccatgatact gattccatta
      961 gccatggttc tgctaaccct
//
LOCUS       KCLA01001321             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21496upu ultra-conserved element locus uce-1485,
            sequence.
ACCESSION   KCLA01001321
VERSION     KCLA01001321.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21496upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-1485"
BASE COUNT          165 a           90 c          137 g          171 t
ORIGIN      
        1 tctctagggt gttttagtca ttttactgtg gttagaaatg gcaaatcggg gttatacatt
       61 ttaggtgttt gcgagaaatt attctggaca cttcaagttc cctgcatttt tcaagacagc
      121 cagcaactag tagtctacaa gagctttgca tgggtagaag tggtgttgtg cgaggatgtc
      181 tgttcccgtt gcgggtgggg gaggaaaggg aatgtatgtg cgtatgtgtg tgaaggtata
      241 tagatacctc cttcgtagta atgttgtgag gaatcctcat aaggcctatc gtagccttgt
      301 tcaggatacg acggttgctg ataaccgtaa tcattatgac ctacatcaat tcgacaagag
      361 acaggaagaa acgttaatgg cctctgagtg aaaaccctaa aaatattgca gttctctgaa
      421 aaatggatag acatgaaaag aattgtcaat tgtattagcc caagactcat taatatgatt
      481 gcctttcata ttgaattaac atgtgacacg aaaaaagggc ttcatgttgt agttttagca
      541 acatcacagt aaaggatggt ctt
//
LOCUS       KCLA01001322             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21512upu ultra-conserved element locus uce-5136,
            sequence.
ACCESSION   KCLA01001322
VERSION     KCLA01001322.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21512upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-5136"
BASE COUNT          212 a          215 c          249 g          183 t
ORIGIN      
        1 ctggcagccc cagcagagca caacaggacc caagccagct tgtagactgg gggtcaggga
       61 gtggaagagg agcagtaatt agtttgccat cgccctcaag ccagggaatc caaaccccaa
      121 gcgtttccca ggccggggca cgttcaagcc gcaagcgagt gtcagccact cgctgccatg
      181 tgcggccggc tgcgcacacg tgagagagcg ctgggagagg gcggttgttc cagcaccact
      241 gtggttaaga tgctgaggca atctcgagtt ttcaggccat agctgtcagg acgcttcggt
      301 atattcatca ccccccactc cttggtgata aaaatttaca cagccaacga aacgaagatt
      361 aatttcatgt gaaaagctga cagaatggcc catgtcattg ctttatttgt gccagcactc
      421 cgtaactcgg tgcaagttcc atcgaggtgg cagacacccc gtccccttga gccatctctt
      481 ctcctctcta atgatgccac cgttgtgaca aaagcaagcg acacagccgg tccgtgcgaa
      541 cttggaatta attgtcttcc gaaaggtcaa gtatgttaat gagcctttgg ctgcgcgcgc
      601 gctctcccgc gcctttccac cgtggatgga aaaaagatgg gagaaataat tacgggaata
      661 ggagagaagg aaggaggaaa tgaaagaaag cgtgagcttc tggaagaggc aggatcccgt
      721 gtggtttttt ctcctgttcc agggctgagg cagactaatt gcatcagtgc gagtgtgagc
      781 agtttgctcg cagccgtaga ggaggccagg gatgtcaggg ttggtgtaac ctggcacgga
      841 ggaggtgaat tgcacctcc
//
LOCUS       KCLA01001323            1117 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21528upu ultra-conserved element locus uce-538,
            sequence.
ACCESSION   KCLA01001323
VERSION     KCLA01001323.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1117)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1117)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1117
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21528upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1117
                     /note="ultra-conserved element locus uce-538"
BASE COUNT          352 a          224 c          206 g          335 t
ORIGIN      
        1 gagaagaaaa gtgtccttgt gatcatttcc tcaaatcaaa tagctagagc tgcaaatttg
       61 cacaattgta aaatgtatat gaacaaaggt tttactgagg cagtataaat gcaattacac
      121 catgacattt tattcagaaa gctttctcaa agcagttaga agtagctatt ttttaattga
      181 ggcccaaaat agcatttacg ataatgacca agcatgcatt gtggatgaaa cagcattagt
      241 gtcatttaaa caaaagaaaa gtttgcagaa agcatttcaa acatggatta caacccctga
      301 aacttcttaa tataaatctc ttccaacatt gagacacaga caggagtttt tgccttttgc
      361 aaaataagag cacaagcaat acaaaagata aagtcactaa agcacaagtt gcttaaacat
      421 caatgggttt ggaatagtgt gaaaaagttg ttaaacttac tttatttttg tttccaaaac
      481 ttatatgttt ctcctccctt gtgtgctgaa ctgtgcacta aagctgtgtc tttgaaaggt
      541 agttcccatg atatgacatc cagtgccttt gactgcctag agataagcac ctgcgtttgt
      601 gtcccctctt tacgtcacac ctccctattc aaaccttctc aatatgattc acatttgcac
      661 atcaacagcc tcatgcgcat acacagattt ttttcggctc tgggcccaaa actttcactt
      721 taattttcat cacatgattg ctgtggcata tgtccttcca aacctcccat atatcagtca
      781 tcatgcaaat gagatggaat atcactcctc tgcagcagat ggccagggat gataacaatg
      841 gctcaacaga ggagattcaa tgtccctgac tttatcgcca cggcaacaac aacctaaaat
      901 atatgtaatg gaagtggtgc ttattaattt tgcaggcttg agtgttctga ttttgtgagt
      961 gaatgggctg agttaaaaag ggggctgtgt cctcctgcct ctagaagact atctataaaa
     1021 gccagggacc tggaaattat tttcagtgac taagaaggca acagcctagc aattatttga
     1081 gtaattaggt gtaattcctc cctgtaggcc ttgtacc
//
LOCUS       KCLA01001324             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21543upu ultra-conserved element locus uce-6574,
            sequence.
ACCESSION   KCLA01001324
VERSION     KCLA01001324.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21543upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-6574"
BASE COUNT          260 a          149 c          160 g          269 t
ORIGIN      
        1 gcttactgaa ctgaataaat ataaaagctt ttcacgtgca ttcctatttt cagtctcaat
       61 acagtgcgtt aacctcagaa tatcaaactg aatcaggggt tctgagaagg ttggctccaa
      121 agcagttaga attacagtct tcattacact acctagattc atgtttcaga caaccataac
      181 cactgctttc acaacctctc acctaaagtc gatcaatgta cccaaataag tgactaaatt
      241 ttcctgcaag tgtttctgaa cctctcaaaa catggagtct gtgaaggaac tgaaaactga
      301 gactaaaatt attatgaaga tactttattg gatgaaattt ttccttgcca ggcaacaata
      361 aactgttctc aatagcgtgc tcaccacaca gtgtgtcagc acatattatg cagtctggtg
      421 ctgagtggat gtgtcagctg cccattagac cacactaaaa tagaattgct gggagcctga
      481 agcatgaagc atgatattag ataaagtgat gaaatttcac ttgattaaag ggccaggtca
      541 aggacagtta cctcaggaaa ttcctttttt cctagaatat tctctaagtt tgataaattt
      601 atcctccttt tcagcttatt tttgattatc atttaaatca tatgaatggc tgcatttaca
      661 tttgctggct tccaacatat tgggaatgat gggaacagta gatttgtatt atgtaaaaaa
      721 gaggaggagg cagaaaagta ttgactatgc tccatattag aggaaatgct agattgattt
      781 gtttagagtt gtttgtattt tcttcctctg aggtagagca gctgggattt ttttttag
//
LOCUS       KCLA01001325             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21559upu ultra-conserved element locus uce-4088,
            sequence.
ACCESSION   KCLA01001325
VERSION     KCLA01001325.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21559upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-4088"
BASE COUNT          212 a          138 c          151 g          248 t
ORIGIN      
        1 tccatgcaag acataattgc ctcctgaacg tgatggcaaa aagccaaaca ggcaaaacct
       61 gctgcttgct acttaattta cagacttaca tttaaatata ttttatgcta atcatttgta
      121 gtgagagatt tacccgaaaa gaacctgaaa agcttcatgt gaaacacgca cagctatttg
      181 tgttagtgct cgggctttat ttcagggatt ttttttgcac tgctctagcc atgcagcaat
      241 ctgtaaaggg aacctactct gatacagttt gaaaagtgca ttttgtactt ggctctccct
      301 ttgatcgaat taatctgggc ttttttgtag ttctaaatga ggcctttggg ctgacaatgt
      361 agctgtttaa aggggatttt aggggataat agccaatgca aatagtgcca tgagaatggc
      421 aacttgcttt tgcactttca atcacgtaat aacagcaaag aaagctttta aaatgaattg
      481 aaattttgtg gcatgccatc tgggattatt tggggaaaca gttctgaatg ctgcggttgt
      541 gtaaaagaat ggtactatgg gacactctta agctgacacg tttcagatgg cacccttatg
      601 ctaactgctg caaagttggc tagcattttt ttattatttt ctttctcccg gattatctgc
      661 aaaaaattct ctttgctggt atttgggact gaaaaacttt tctattgtta aagaattcaa
      721 ttcaaacccc ttgcagctgc tgatccctt
//
LOCUS       KCLA01001326             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21575upu ultra-conserved element locus uce-7902,
            sequence.
ACCESSION   KCLA01001326
VERSION     KCLA01001326.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21575upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-7902"
BASE COUNT          209 a          129 c          116 g          224 t
ORIGIN      
        1 catctcaggg aaatataaaa gcattattcc tctgagattt gaaaaaaata cataattact
       61 tcttccacca agcatgattc ttttaaataa ccttcatttt tgtcccttgg aaatgaaaag
      121 aggtttacat taaaaaggca tttcctctga ctctctgtcc ttgagcagca ctaaatgtaa
      181 actataccct tcccttcttc ctttgaagaa aaaggagttt caatcttctt ctgtgaacac
      241 ggtccattta aataaggaga tggagtccca tcttttcgat cagctttctt tgtttgactt
      301 gtcagtaata acactttagc tgaaattgta caggcgtcct gctaatttag taattattga
      361 cacggtgctg ggcaagaaat gatagcaaac acagggaact gttaagaaga aatgaaataa
      421 aagatcttca tatcattgtt gaataatggt tgagatcatt ttgtgctcta agtaggccca
      481 agacaccttt ttccattttc tcgacacatt tataatttat gctttgtaat agttccaaat
      541 atttttagga ctccgcactt tgtttgagaa tccagaagaa ctgaatgaga atcacgaagt
      601 gcacacacag atgagtgagt ggtgtgacct gccatagctt ttgatttaag gatgatccct
      661 catttcttta tatccccc
//
LOCUS       KCLA01001327             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21606upu ultra-conserved element locus uce-905,
            sequence.
ACCESSION   KCLA01001327
VERSION     KCLA01001327.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21606upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-905"
BASE COUNT          199 a           94 c          127 g          157 t
ORIGIN      
        1 actacaggaa gggatggatg atttctttaa ggaattgcgc tatttataaa ataaatataa
       61 aatcagatct ctattttgca caagcgacaa gttatgagaa ctccatcagc tgtatatttg
      121 ttgaacaccc gcctcctgtg agtataaatt gcaccttact gagtagaaat aaaatacagt
      181 ccaccagaga ctgctgcaag gtgtagctgc ttgtctatgg gcaagtaatg acttgcgttt
      241 tcagctgctc cttagtaaga gccttagtaa ttggaatcag ttattcaaaa catctctaaa
      301 tgtgatttaa atggcaagga tttaataaca tagaaagaag tcattacaga ggttcaagca
      361 ggggagaagg gaattccgtt tttcagagca gagggagaaa aataaagcaa ttacttgatg
      421 taaaggccag aaacaggact cctgctgtca cagagaaatc aaatctgtca gcaattagtg
      481 ggatcttagg agccaaagaa cccttcagtg ttgaacagtg aataaggggt tagcaattat
      541 atgaactgat aaaagtgttc tggttttcaa acagcag
//
LOCUS       KCLA01001328             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21621upu ultra-conserved element locus uce-754,
            sequence.
ACCESSION   KCLA01001328
VERSION     KCLA01001328.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21621upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-754"
BASE COUNT          271 a          160 c          156 g          198 t
ORIGIN      
        1 cataaggatg ctcccaaatg acggcgcaag ggtaaaagaa caagaagtag atgagagccc
       61 ggtacaagca gcaccttcgc aaagccacag actcccacac agctttgaaa tgaagtttcc
      121 taaagtcatt aaagactaaa gtacccagag cttcttttgt tggggtcctg aatgagaaag
      181 aaaagcaaaa aaaaaaaata caaaacaaaa acctcaacaa ccccttaaag ttccgaggag
      241 aaaaattaac cctgggaaaa tgtggaaagc ctgagattat agcagacatt catcccggag
      301 ctgatttttt tgtacaatcc tgtgttgtgc tgaaaacaaa aatctgagaa tactccttaa
      361 agcggaaaac aaagctctgc cccagccata catctgtgag ttttgaaaca aaggtttgtt
      421 tgtgtgcctc aatcactctc gcccatgaaa gcagacactt acttgaaaaa cttttcaggg
      481 aaacactcta aaccaacatc ctggtataaa tttgcaaaat gcaatacagg cctgattgtc
      541 tttggagagg atgcgggacg catacgaatg gctctttctg aaacgtaatg ttctttgcat
      601 ggctcagtgg ctaatgtaca ataaatcaac aaaagagcgc ttcaagaaag ccattgggca
      661 gcagcaaggc cactgttatt ttatcttttt acagtattta attggaaggt ttttcctgaa
      721 actttaccca accttcaaat taccgggctc tgtagaagca gagattgata agatgatttt
      781 tttta
//
LOCUS       KCLA01001329             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21637upu ultra-conserved element locus uce-7548,
            sequence.
ACCESSION   KCLA01001329
VERSION     KCLA01001329.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21637upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-7548"
BASE COUNT          251 a          157 c          131 g          259 t
ORIGIN      
        1 cttacttcat agtgtgaagt gtactgcaca gtgtaatcat gctatgatca cacagcatca
       61 accagacata aaacatttcc ctccttcgac tacatttgga gtgaatggct aaactttact
      121 gtattttagc agagcagaat tagtgcatag attttacacc aagatgtctg ggacaaaacc
      181 aatcctaact ttctgcaact gcaatcagga gattctgttt attaaatcca gctctgagtt
      241 tgtggcacag attttaacta acatactgtt tgatttctct taaagttact agatccatga
      301 agtgtgcatg tgcatctttg tgtctcctct tgtacccatt tctattgcac ttcaagtttc
      361 tgtcaatata gcctccaata tttgaatcca ctggtagaac agatgcagta attgcaaaca
      421 gctgtaaagt attactcatc ttgctaatca aaatgacttt ctgctaaata aaccatgaaa
      481 aaagcttttc caccatcagt gatgtggagt ggaaatgata tatactataa agagtccacc
      541 atggaagtaa aatcaacagc taagtttttc tacaacgatt ctacatacta atgcacattt
      601 ccaaaatggt tttagaaatt tctctatgtt tagaaaaatg aatttgtgta aagacactaa
      661 tgttcctcca ggtattttgc atgatacctc cagatacagg agcttgaaga attcctttat
      721 gctttctcaa gatcataatc caaggggaga tacttgcccc atatggtttt gttcgatgag
      781 catcacatgc tatactat
//
LOCUS       KCLA01001330             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21651upu ultra-conserved element locus uce-2073,
            sequence.
ACCESSION   KCLA01001330
VERSION     KCLA01001330.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21651upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-2073"
BASE COUNT          166 a           93 c           85 g          138 t
ORIGIN      
        1 tatttacatg atctacaact ccctttataa ttactctccc aaaaacccaa tccaaaaagg
       61 cacatttgtt atatccaaag agataccacg ctaaaagggg tggataggga gactactgtt
      121 ttgccttttt ttcctagtag aaagattgac tagatattaa cacaaatggg tttaaatgtg
      181 aagctgccat aaaagcaggc acataaatgt aattctccca gccgctattt tgatgcacat
      241 ttttgattcc atgaatattt tatgaaatgg cccaaactaa agccatataa cattcctaca
      301 ttactgatgc ttgcacccgt aagctacaaa cattagaggc atgattgagc gcattaaaat
      361 gaactcattc agcagtgcat tgattacttg gggggggaag ttgctcccac tcaagaaaac
      421 agcacacaac tctgaagttt tcaatgctga aagataggaa ataggaataa tgtgattttt
      481 aa
//
LOCUS       KCLA01001331             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21667upu ultra-conserved element locus uce-4874,
            sequence.
ACCESSION   KCLA01001331
VERSION     KCLA01001331.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21667upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-4874"
BASE COUNT          233 a          112 c          126 g          227 t
ORIGIN      
        1 caaagtctct tgtttataca aaattagata tatgcctgac tttaatttga aaactgtgta
       61 acttggacaa aatgtttctg gaataggttt aattttaaac agcacaacaa cactgaagtt
      121 agaaacatgt ttgtgtcttt ttttcatgac tagcccatgt ctattctcta tgaaattgat
      181 gtcaaaaaag tattatatat tttcagtggg aaatagaagg ctgccctcta ctatccttgt
      241 caggacgtcg tatcccttta atcatacttt tcatttcagt acattgaaat ttccgttacc
      301 aaggacaaca tcataaataa aagtgtttgt gaaattttta cctgcagctt cctaactttg
      361 tgtattaagc atgagactag cagagaggtg gtcaaatgtg aaaatttata atcatttatt
      421 atgtacggct gaagcgagaa gggaataaaa gcgtgaaggc atacatctat aaactggagc
      481 agaaaagctt aaatgaaaag taaagtgaat ttctgtgtct tgtcataaag taatgagaac
      541 ctagagcttt attcatagca acccaagatg catttactct caatctagcc ttagcagtaa
      601 atgcttccct gatgtattgc ttcggactta caaagaaata tttgtgctct acataatagt
      661 atagttagga gaattactgc atggctgagg agatccta
//
LOCUS       KCLA01001332             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21682upu ultra-conserved element locus uce-1173,
            sequence.
ACCESSION   KCLA01001332
VERSION     KCLA01001332.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21682upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-1173"
BASE COUNT          173 a           86 c          106 g          185 t
ORIGIN      
        1 aaaggctttt gtgctgtgat ttatacacaa tttatagacc ttagcagcaa atgctcaagc
       61 ttttaacagt tccagcacga caactggttt gcatcagtct tgtagtgcga ggctcatatc
      121 ataggactat gcatgtaata gtgatactgt catgtgttaa atgagcatag cttgaagtat
      181 tattttttta aaaattgaaa ggttgtggca gtaataaaaa ggttgaatgg taatgtctct
      241 aattgaacag taaggcctct ttcctattaa gtcactcttt catctgtctt tttaattatt
      301 tcattatcat tttgtactgc agttcacaat gaaatgacca tttgtgttta agtgaaagct
      361 aattattagg actgaattat tgtgcagttt attgatccct acggtggatt aagggcttta
      421 agttcgtcta gacagaatag ttagcaaaat gacaaaagga aacatataag acccttggga
      481 agaatcccta ggctccataa gcaattaatg cctgccaggt aatggaattt aagtttatac
      541 taaatccagc
//
LOCUS       KCLA01001333             396 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21697upu ultra-conserved element locus uce-5582,
            sequence.
ACCESSION   KCLA01001333
VERSION     KCLA01001333.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 396)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 396)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..396
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>396
                     /note="ultra-conserved element locus uce-5582"
BASE COUNT          111 a           82 c           78 g          125 t
ORIGIN      
        1 ttctaggtct gtaacgcctc tgtgtgttca cagaaacggt ctatttctct tacagaacct
       61 gatccagtgg aagaattcac cgaaccaact gaagttgaat caactgaggt actattgcct
      121 ggaaagattg ttgtgttata tagctttaat gccacttact tttactttca taccctttct
      181 tatttttatt ttagtatgta aacagacaat tcatggcaga gactcagttc agcagtagtg
      241 agaaggaaca ggtagatgag tggacagttg aaacggttga ggtaagatct tgtgtactgc
      301 aggtaaaatt gcaatccctg ttcccactga cccacactcc atgctaggct ttagtattgc
      361 acccttctcc ccagtatata caaaaatgcc tgtatt
//
LOCUS       KCLA01001334             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21712upu ultra-conserved element locus uce-6688,
            sequence.
ACCESSION   KCLA01001334
VERSION     KCLA01001334.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-6688"
BASE COUNT          282 a          134 c          142 g          264 t
ORIGIN      
        1 tttagggaaa agggatattg acacataaat ttgaaaaata ttgcaggaat actacaaagg
       61 acattctgga aagactatac aaaaaacatt ttgctgaaga gtcatctgaa tacagtgtat
      121 ttggaacatt ctttgtagat ctgatctatt ttttattagt tttgtggtgt tttgtgaggc
      181 agtacattgt agtgtcatgc taatgaagga ctgaaagtat tattacctag agtcggcaat
      241 aatgagaacg gaacctttaa tttcaagcta taagataaca cattgattaa taaccacgga
      301 atgattagtc aatccaagac cttaatgcac aatggagaaa ttcatccatt atctgttcaa
      361 tgtaattctt ctttcatctt ggtgacttta aaaacaacca aagaaaatta ctgtccctca
      421 gtaaaggctt ttgaatttca tatgcattta attagataac tgccagccca aggacaggaa
      481 ccatgacaaa tagttgttct tttcaaatta gaagaataga ctgttcactg agcaatattg
      541 atgttctctt gtactgagtt atacaagagt tctgctacta cttcctttaa tttgtctaac
      601 cttttttaac atttaatgag cttttaaaca tggttttagt tacacatgct ttttggtcat
      661 tttaaaaaat gctgctagca gcaaaagtac ccgcatagcc aggaatgcac accccacaat
      721 ctccttggaa ttaagcacag aagtatagtt tacacaggaa aacgagtatt agaaattagg
      781 aggccatctt actgttagta gaaaaacaac agttaatcct gt
//
LOCUS       KCLA01001335             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21727upu ultra-conserved element locus uce-5532,
            sequence.
ACCESSION   KCLA01001335
VERSION     KCLA01001335.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21727upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-5532"
BASE COUNT          271 a          214 c          179 g          276 t
ORIGIN      
        1 ttcttctgca tctctataat aattccatgt aaattacaag cactagagag aaagactata
       61 aggaagtgtc gtaccatcat ataccacact tcccatagat tccaaattga gaaagcaggg
      121 ataatctgga ttccagcgta ctaagatcat aaagcttttt gcaaccattg cctaagatat
      181 gattttaaat tctaaattgc tctcgttttt acttcaggat tcacctcatt cgttgaaaca
      241 ttacctcagc atctattgag gttttgcctt gagcgaggaa tgattgggct ttttgtttta
      301 ttttggtttt catttttaca tttaaaagct gtctgcttct aaaatgaagc tatttaatcc
      361 cttgtcatca cacggtcgta aaaattgcag gcagacagaa gttagcagtg gctgcttcac
      421 aggccccaca gcaatgcacg gtaacagatt ttcaaagcag ttcaaagagt ccagttccca
      481 tctgtgtttg gcgaagggtg caaaaacctt ggggccatct gaaaactctg cttcatctct
      541 aacacttgga ataacaaagg tgttattttt caaagccaca ttctcccctc ctggggtggc
      601 tctgcagata tagttcaggg aaggtgggaa acttcagagt ggatattctc cttctagact
      661 ttgcctcctt cttttgtgga tgtcacaatg gtggcctata taacatgggt tactgccagt
      721 agaggccaac agttaatgaa ccctatagac aacccctttc ttctcatttc agtacaaaaa
      781 cctgcaggaa aacagtatcg atgttcctcc tgcacaccct tctctccaag accaggagtg
      841 ttatttgatc aaaagaaagt agagggtgct ctacacccac cgtacgatcc aagattcctg
      901 taacacaggt acccatcgca tccagccacc aaaggaaacg
//
LOCUS       KCLA01001336            1011 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21743upu ultra-conserved element locus uce-6382,
            sequence.
ACCESSION   KCLA01001336
VERSION     KCLA01001336.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1011)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21743upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1011
                     /note="ultra-conserved element locus uce-6382"
BASE COUNT          296 a          245 c          200 g          270 t
ORIGIN      
        1 tcccttccaa cataaaccat tctgtgaatc tatgaactct ggatacaatc tctgaagtct
       61 gtgacaatac cacacataca tgggtgagta ggcatagcat gtacaattgc acatgagttc
      121 ctgtgagcag gcacaagcat caaggttaac acagtaagtt aacaaacaga aagcaaatga
      181 tctgggaaga ttcccgatac cacatcctag ttacttaatc accctgcaga cacattccag
      241 agcactctgc ttttattggt ctcgtgttaa agcccaaact gcgcgctgtg gttttaaacg
      301 accagtaaaa tacaaaataa tttctggcat aaagatctac taaagaggtt ttttccccac
      361 aaattggctt gtctgataca tcccctgctc cgctttagtt cctgctctac gctgcagtcc
      421 ttttggtagg atgccaaagc ctgtcaatta acagtaagcc tatccctcat gaacagtagc
      481 agggactgtg atcatgttca actaagatca aggattagta aatcagcatg gcaccagatt
      541 gtgggcacta tttaaacccc acaggtctac aagccaatgc agcaatatca tattccagct
      601 ggatgtggag aagagaatct catagttaca gaggaactcg cttttcacct ttcctgcaca
      661 ggcaatcaca agtctactta ataagacccc tgattaaatc actctggctt tctcaaatgc
      721 gagttagcaa acatccgcat gccacctctg ccggtgtgtt ttcaaagagt ttccaacaga
      781 tcaagcatat ttcactaaga acaggactgt ttctcaagag tgaaccaaac attgcaccaa
      841 agctggtctt tagaccttga aggactgcga tgctattgca ccccttgcct ggcatgcagg
      901 gcttctccaa gttgcttctg ccgtttggtg cagagtcagg cacaccacac acgggaaagc
      961 atttgtttcc ttagtaaaca gagtctgagt tcagggcttg atgaattttg c
//
LOCUS       KCLA01001337             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21758upu ultra-conserved element locus uce-737,
            sequence.
ACCESSION   KCLA01001337
VERSION     KCLA01001337.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21758upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-737"
BASE COUNT          223 a          107 c           94 g          184 t
ORIGIN      
        1 cacgcgtggc tacgtgtcaa cgtaaggaac agtcggacgt gaaaccaggc tcctgaacaa
       61 tagctagggg ctttttatgc aatagaaaaa tatattaaaa atacataatg taacttgtct
      121 taatatactt ttctgagtct aaaaatatgc cagaccaaaa gaaacatatt tacataaaaa
      181 gcagacaagg tcaaataaca aagaaagccc ttaattagtt gtaatcaact ttaatttgca
      241 taccgtatat aattcctaaa tgattgttaa taataacttt atataatgga cttccaattt
      301 tcatgaaaat ggcacatttt gataagcaga cacaaaaccc tagtactaat aaggtttaat
      361 ttgcatacat tagactgatt atccaaacaa aaggattaca gtattacttc tccatacctt
      421 tatgtcctta ttatgcacat ttattaactt cacaaaagct agctgttagt gacaaacaat
      481 agccgtggct gcaagagaaa tctacagtat gaataaagtg cattttcatg ctaaggagca
      541 aagtttatac cgcttaaatg ttttgtttaa cccttaaaag cattctgcct tgtcaggcag
      601 gcgctatt
//
LOCUS       KCLA01001338             491 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21772upu ultra-conserved element locus uce-1318,
            sequence.
ACCESSION   KCLA01001338
VERSION     KCLA01001338.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 491)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..491
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>491
                     /note="ultra-conserved element locus uce-1318"
BASE COUNT          163 a           76 c           82 g          170 t
ORIGIN      
        1 ttgagtttgt acccgttatc acagctgcat acggtgtcga gcatgcctca gtgtcttcga
       61 gcatatttaa tatctttaga tttttaaatg aaaatgtagc tgtcaatttt aaactaattt
      121 ggatggacag caataaaatg caaacctcac ttcaaattag aattttcagt gtggatttct
      181 aatggaaagt aattgctgac aataggaaat gacaaattac taattactta gttcaattag
      241 acttttgtgc ctttggtcct aagtggcaag catacagcaa atcttgcact tttataacaa
      301 ttaatgacac taaaactatt taaactgccg gcagatgtga gtaagaagac atgaattgaa
      361 atttacttaa tttacatact atcccaattt tatatcgagt aaatggtgtt taatttttat
      421 gttacaatta aatatcactg gcatagtcta gtttcggcgt aacttttccg actaaaagat
      481 ttgctgaaat g
//
LOCUS       KCLA01001339            1107 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21788upu ultra-conserved element locus uce-7546,
            sequence.
ACCESSION   KCLA01001339
VERSION     KCLA01001339.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1107
                     /note="ultra-conserved element locus uce-7546"
BASE COUNT          317 a          230 c          226 g          334 t
ORIGIN      
        1 ttggcaaata aagcaggtcc actgcaggat cgtttattta gccgggctgc tggggcaagt
       61 acaaaagggt tgatggtggt gccattactg agggagctat ggctagagtc tgatccactg
      121 tggctgagga agaaaaaaca gtcactcagg acgatttgca aatacccaaa tgttctgttg
      181 tttgaagggt ttattttacg acagggaacc cacagttact gcaccccaaa agttctgttt
      241 tacgatcagc tgaagcacag gcaaatcgtg aaaagacaat tgtccacttt cttgtgttgc
      301 tttatgggct ttaagtgcct acaaaaaagg attccttatg ctttaatttc tctttatttt
      361 tttgactgta aagacccatg gggtaaatgc cagtcccaca atcctgcagt tatatggtta
      421 ctgtcagcct gctcaaatga tgcttcctgt tcattaggcg tcctttcatc tgacaacaat
      481 gtactggctt tgctgcaatt cttagtcaac gcccatctct tcaatagcct gtgaatagta
      541 ttaaatagtg tttatgctag ctattgttgc cttttgtgtg gtttgtctaa ttcacagaga
      601 aaagtctgct tttgtggtct aaggctggct acgtcatggc acgccatgtg ccttctgatg
      661 ggatccattc ctgctgagtg ataacattac aggcctgaac tcctttgcaa tacaatccag
      721 cattcttaac acagtcaata cactcacagg caatctagtt tactctttat attaagaggt
      781 ttagggagac aaagctcatc taaatacctg ctcgtgaaac agataagatt aattcaactg
      841 attggagaat tacccccctg ctcccacaca actacacaat gagcaccagg aattaataaa
      901 aaaaaaatac tgactcagtg caaggaatgc ccaaatattc caggagtcgt tctgtgtaga
      961 cacacacaca cattttagta cataaggtga cattattgtt cccagttatt gtttgagatg
     1021 aggcttaatg ctagagtcta agctgctcct tttctctgct taaactactc acaaaagaga
     1081 aaggatattg tacggatgat tacatta
//
LOCUS       KCLA01001340             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21803upu ultra-conserved element locus uce-2507,
            sequence.
ACCESSION   KCLA01001340
VERSION     KCLA01001340.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-2507"
BASE COUNT          148 a           73 c           83 g          146 t
ORIGIN      
        1 tcatgagctg cctagatctc attgcagtgt ttctgctgct accatgtctc gattttgttg
       61 tttataggaa gaattgttta agacagcaag aatcttgggt cttctctttt ttatgaaggt
      121 caaactaaat tcagaattat aactgaaaaa tgaaatgtaa atacctagat ctttgataac
      181 aaagtaatta aaatgtatgg ttttgcctac tgtgtataat aagggcttat atttgatcaa
      241 ccataaaagt tatttaatca ttttaacctt ggaatactac cccacaaaaa actacttaat
      301 ggaagttagc tgagaagcat tagagtatca caacatcaag aaggctgagc gagagggcac
      361 tgaaaattca agcacagctt atttctgcca taatactata gcaggttgca tggcaaccag
      421 tggctgtgga ttttgaagtt actttatcct
//
LOCUS       KCLA01001341             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21819upu ultra-conserved element locus uce-6267,
            sequence.
ACCESSION   KCLA01001341
VERSION     KCLA01001341.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-6267"
BASE COUNT          138 a           56 c           49 g          107 t
ORIGIN      
        1 aaactaaaca ttttgggaca aaaatcacat aggtagcaaa catgcaaaga aatgcacaaa
       61 gaaagaggtt caggtgctat tttctataaa tattaccaaa aaatgggaat ttaatggtta
      121 aatataagaa tttttttcaa atatcagtat cttccagaag ttttagagca actataaata
      181 tgtattcttt atcataacat agacacactc acagaccttc agagaataca atattcattt
      241 tgctgcagaa gaacagacat tgcataacaa tgagattcgc taatgaaatc agctatcaac
      301 ctggaataca tatgtattaa accaagacct cagtgtctct tttttttttt
//
LOCUS       KCLA01001342            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21833upu ultra-conserved element locus uce-7658,
            sequence.
ACCESSION   KCLA01001342
VERSION     KCLA01001342.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-7658"
BASE COUNT          319 a          227 c          201 g          288 t
ORIGIN      
        1 aaaatgatag gaacgctctc ttctctaaca ggaatgctaa aaaatgtgca cagcaaaatc
       61 cacgaggtga tgagccctac aggaaaagtg caagcctttg aaaaagaaag tgtaattcat
      121 aagcagattt tgtaaagtag gtcttcagcc aacacaagtt ccctgaaaac cagaacattt
      181 tcactctgga gcagaggcct tgcacctagc ccaggactgt gctggctggg cacaagttag
      241 tctgcactac ctgatcatca gtgtcccatc tataaaacct tgtgtgttgt tgactgctgt
      301 tactacacca tggtttacag gactcaacat gtcatttctt atgtggaaca gaaaacatgc
      361 ataacgtgct agtccctcac tccaccctgt ctgtgatttg agttatccat ataatggcag
      421 gaagaaatgc ttctcttctc caagataagc cttcctctgc ttcccccatc atggaaattg
      481 tccagagttc cagagaaatg ttcacaagca tttgttgcat gcaaatagct gccaaataaa
      541 tcattgtata ttgcagcaca acccctgagg gggtttgtac ctatggaact tgctactgtc
      601 actccagttc cccatatacc ttaatcatgt cattcattca gcaagaagga tgaatgttac
      661 agcttgagac tttaatccct cactgctgag gatctgattc tcagaaagag agagcaggaa
      721 atccagagga ctttaggtag gagtcagata ccattatttc tcagcactgg gtttagcaag
      781 gattgcatta taagaatgtc ttcctaaaat attccaggag atatttactg catgagcatg
      841 catgtatgta cgtatgcaca tagtaaatgc agggccagta cagcaccttt aaggcagcaa
      901 atttgcaacc ttttaaagca tctgaaaaac tcttatcttc tctcttcctc tgtggggtag
      961 ttttatagat gacaaaacaa atctagagga aactaacatt atgtcacacc ccttaataat
     1021 aatactaatg gcagt
//
LOCUS       KCLA01001343            1094 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21847upu ultra-conserved element locus uce-7358,
            sequence.
ACCESSION   KCLA01001343
VERSION     KCLA01001343.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1094
                     /note="ultra-conserved element locus uce-7358"
BASE COUNT          306 a          233 c          241 g          314 t
ORIGIN      
        1 tcaataccaa atgtagacca ccttatccag ttatagtaca taggacaggt gctttgccgt
       61 tcaaatgcat tttagctttc cctgagattg gctccagcag tgttctccat gtggtaggca
      121 ccatgggggt gcttgtatca ccctgaactg aatttctttt gggactaggg atggactgct
      181 tttctgttcc tccatctctg aaacttccct tggagatctg caaagagcag gaggaaatgt
      241 ctgatgtttt catccagttt aggaaagccc atgcatgaaa taaagttcga tggaaaagac
      301 cagctttgct ccagggataa tattattggg atctatctga aggaataaga aaagcaactt
      361 gtgttaatct taaagcagaa gatctctgtc aaaagggtta atgcaacgtc tcttttcccc
      421 caatagcttc atggccctaa cagctttcat tgtgaaatgg gtgcaggtgt gggctatgct
      481 ttgttgatca caatcccttt tgcagaggaa gctttgaata tgtttgacat aatcagctca
      541 cagcctttgc ccgcactctt tcataaacag gccattttca catccttttc atgggatccg
      601 acaagcggaa aaataattaa tgttacctca gcctaacagt gacccagctt tgattcaaaa
      661 agacggcatg ttgcataaac taaccattta attgagtgat agaaaaagcc cacatgtatc
      721 aattctgcct ccatgtatta tgattactgg ggctttgcaa ggattgtgct cccttggtca
      781 taaagcagag cttaaactca agctcatgaa gtggtttcag aaggatcgat agagcatgag
      841 ctggggatta tctgtgttta tggtggaagc aggggaatat gtgtgcaccc agccatcatg
      901 gcgcatgttc agcttacatc cgggttaggt cacatgtcct catgtgtaac gacagtggca
      961 agattttatc ccaccaaagg tcattttgga tgctgctggc actacactgc caccttgcca
     1021 tgacctcaag gacaaagcta actggtatgt accacagtta gaattacgca taatatcaag
     1081 aggacaaagt catc
//
LOCUS       KCLA01001344             837 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21862upu ultra-conserved element locus uce-855,
            sequence.
ACCESSION   KCLA01001344
VERSION     KCLA01001344.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 837)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 837)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..837
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21862upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>837
                     /note="ultra-conserved element locus uce-855"
BASE COUNT          253 a          172 c          162 g          250 t
ORIGIN      
        1 gggctgaagc cacttgttgc gtgtgccggg agccagaggc aggagggaac cccagaggag
       61 cagggtgaga taaagaaatg tgatgtattt gcaaagagag tttgtcatca cttagctaaa
      121 attgcttctg aagtatcact ggcaactgtt ttctatgtct gacttagtga cggaggagct
      181 gcagtatctt aatagagaac tccagaactt cagaagggtt tctccttgtt tgaatgcaca
      241 gcacaatgaa tttgtaccca cagagcattc accacttaca tttcaaaacc tacagcacac
      301 taaacgtgaa acttttgttc aaatttcaag gattttgata gcccaagtga atagacactg
      361 cctattgatt tttcccttac aatgactctt ggataaccta ttttctcatt tatttttaac
      421 gacagctcat gagattttac agcaattctg cccaacctcc taatatcaaa atccctcctt
      481 gaccctgaaa attgtaattc tgctatagat cacagctgct gaatattacc ttttactaag
      541 ctggttaaat aaaatatgtc caaatcacta gatcccacag gccatgactg caattctaat
      601 tatatggggt ctgtatttct gctctactgt acagcgaagc acagctcgct ctgagtctgc
      661 accaaagtgt gggaatccag ttttggattc tagttttgaa ttaaaaaaaa aaaaagttac
      721 actgctcttc aatgattttc ctgtaaaact tttacaaggg aacccaaccc ttttgatgtg
      781 ttccatacaa taaaatgctg tgtaagtctg gaggacagaa gcatgtggcg agaattt
//
LOCUS       KCLA01001345             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21878upu ultra-conserved element locus uce-4644,
            sequence.
ACCESSION   KCLA01001345
VERSION     KCLA01001345.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-4644"
BASE COUNT          262 a          176 c          174 g          264 t
ORIGIN      
        1 caattaaaaa aataataaaa ataataaaaa tagagaagac agcaattgct atcacctatt
       61 tactgtcaaa ttaattcaac tgctcctgag atgccatctg tatcaggaga tcgagggtgt
      121 cactagtttt acgatccatc aggagaagtg agagcagtgt tctgtttgat ggctctgata
      181 atggaaagaa gctaagcaat tgcaacagat acatcataga ttttctcata attacctgac
      241 ccgttacact gtgtcactct gccgccaaac acactgtttt tatgtcagaa gctgtatggg
      301 cattctttac tttgatcatt ctgtattctg cagatgtcag cattactgta ttttaattga
      361 ctctggggta gcattaaaaa gcaccttcta ttttggttgt ttggacctga tgagactgac
      421 aacctggatt tacgaacatt aggccttcat ggtaactgtg tcataaactc cgttttccta
      481 aatcccctag gtaccagtag caaaatgatg ttagtaaacc agttgctgtg tctatgcaaa
      541 gagcacctct gacatcctcc agccataaag atggcaaggt ttttcattaa attaggctct
      601 ggagtcaaaa gtgcatgctg tatcccaatg tgcaattagg agctgaccga tttgttgaaa
      661 gagggttaga gctggcgagg agtgaagctg taggtaaaag tgctggtaac ctcaaaacaa
      721 gaatttcttg acaactttcg taattccagc atgccccatc tgccaggatc atctttttct
      781 tctcctgtag gaagagacag ctgctttttc actacttagc tttcttgcag cattcagcac
      841 aatcctcaaa aatgacagct aaaatacagg tttctg
//
LOCUS       KCLA01001346             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21894upu ultra-conserved element locus uce-4764,
            sequence.
ACCESSION   KCLA01001346
VERSION     KCLA01001346.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-4764"
BASE COUNT          101 a           95 c           75 g           69 t
ORIGIN      
        1 caattaaaac atccccgtac ggcacaacaa aacactctgc ccatggctac ggtgatgccc
       61 gactcctaat ccccactatc tttctttgct tctcagcagc tccctcagga gaagctccca
      121 tcgattggat gctccgcagc aagatgaaat atctaataag gaggaaagag agtgggaggg
      181 gaagcgagct aaaaggatga catcacctgg atagaaagcc tttagaaact gcattagatc
      241 aattggccac cgtatctgca gatgcagccg gcagagcatc tttattgacc taatatcaac
      301 acacggagcg gtacagaggc tgctcagcat ccccccccac
//
LOCUS       KCLA01001347             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21910upu ultra-conserved element locus uce-1723,
            sequence.
ACCESSION   KCLA01001347
VERSION     KCLA01001347.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21910upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-1723"
BASE COUNT          305 a          175 c          161 g          282 t
ORIGIN      
        1 aagaaaaata aatgaaccaa tattcgaatg attcacttgc cctctccagc tggtgtgttg
       61 caaagacctt gttaagcatg aagatatatc tacttcagat tgaattttaa aaaaaaaaat
      121 acttgtgaaa aactgacccc tacaactgaa caaactcagg ttttattttg agtgtcaagt
      181 gtccacacga gagcaatcag cacactgcaa aggttcagaa caaaagtata actgtctaaa
      241 cctatccatt tagaaagaaa gaagaaaagt gaaagcatca gtgacttcat gctttattct
      301 ctgacagtat ccatctttcc aaattgattt ttgatatccg tagtgacctg gaagggagac
      361 acagcgataa ctctcagaaa gtggaaaaca atattattcc cacaaatatg aattacttgc
      421 cggcaggtta aatctactgt gcaatgaatt atgtgaccct ggagctccta taattctttt
      481 gaattttata gagtcgtgag agggcctgtg agctttgaca agcacttaac agccaaaatc
      541 agtcctgaac aactctcttg gacatttgat ttagccgttg taggcataac gttgccagtc
      601 aattttgctt ttgaagcaaa agatgacatt cattcatttc tgaagttata gatttcattt
      661 gtggatttta ttgtaattct ttttcactgg catcttttct gttttgttat gccactcaac
      721 acaaataaat ataaaaacag gttgtcagga atagaacaac catctctcag actttatcca
      781 taagaaattc ttggtatgta tctaactaac aaagtttgtg gcccagctgt tagagaaaaa
      841 ctgtgtctca ggcaggagtc taaaaccagg cctgctaact gctttctgac agatcatttt
      901 ctcttctgtt atcaagaaca aca
//
LOCUS       KCLA01001348             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21926upu ultra-conserved element locus uce-616,
            sequence.
ACCESSION   KCLA01001348
VERSION     KCLA01001348.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21926upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-616"
BASE COUNT          250 a          166 c          193 g          264 t
ORIGIN      
        1 tatcttgttg acatttgagg aaacatgatg attgtcaaca aaacatgggg cctgttgtac
       61 actgtatgac ttcaaacaca atgagatcat taaggattaa ttatgtggga aactgtatat
      121 gtgttttgca agcttgtaga gtgtcacttg cagaagttaa gcaagatata ggagtttcct
      181 aagtttctct catagcttta tttccagcag tattctttga caaactaaat aaattactgc
      241 atgtattgga cctctgaggc ttggggcaaa gaatggaaaa attatttaca aaagcttgaa
      301 aatatctaat cactagaggc agggggcaac tgtgttttaa ttagcagttc ctcaggccat
      361 tggctggctg gaggctttct caaacaacca cacaaacaca ctgaatagct gtttgccagc
      421 cttagggtca ggcctgagat gaaacagata agataattgg ctctaatgaa atccagaagg
      481 ccttggcttt cttgtttgag cttggatttg aaaagtgcgt gtggaagtga ggcttaattc
      541 aaaccagtcc tgaactgggc ccgtttttca gtgactttga tattgtttga agttctgaaa
      601 gtgtttgcca caccactagc ctgctgggct gggcctcccc ggtcacctta attactgagc
      661 tttattgctg actttactac acaggaaagg agccattata tgttccatca acatcagctc
      721 tcctcagatt ggaggaaagg gcagggtgaa aggccactgt aggaaggcaa aaacttcact
      781 ttgaggtagt cagatcattt acccgtgtta aatttcactg tgctatgtgt gtacattcct
      841 cacaacacag aagcccaatt tccatttttt ttt
//
LOCUS       KCLA01001349            1042 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21941upu ultra-conserved element locus uce-3671,
            sequence.
ACCESSION   KCLA01001349
VERSION     KCLA01001349.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1042
                     /note="ultra-conserved element locus uce-3671"
BASE COUNT          321 a          241 c          238 g          242 t
ORIGIN      
        1 gggctacagc attaacttgc aatcggtgaa aattgctgag aaatgaaagg acagctgata
       61 ttcagaggcc agtggcttat acattaaagc tgtggcgttt ggacaacacg ggatgggagt
      121 gggaataaga ggattgatcg caaagaagat gataaaaagc agtggcctcc gatgtcattt
      181 cctgtaatta gactctgcct gcggggtttt aaagatggtc agaaacgtga aatggcgatt
      241 tgtaacctgt gtgcttggat ttttctcttg cagtgttttg tgttagctaa acgttctagc
      301 tttatatata tgaatagcta tacctatctg atagttttaa taatccattg taaatgacct
      361 ctgccagtca attaggcagg caggcaggaa gtcccaccct ggcagagcat cagtgtaaga
      421 ctcttctttc tcaattttcc ctcagacaca ccatcctgag aagccacttt ttcctaccac
      481 aggaagccca agagaacact atagctagca gtctgacagc caaactgaac cctggccttt
      541 tgtatcctgc caggtttgaa aagctggaca tcacccctaa aagtgcccag aagataaagc
      601 cggtgcttga gcggtggatg gctgaggctg aggcccgcca tcgagcaggt atgcagaacc
      661 ttaccgagtt tatcggaagc gaaccatcca aaaagcgcaa gaggcgcacc tcgttcacgc
      721 cacaagcact tgaaatcttg aatgcccact ttgagaagaa cacgcaccct tctgggcaag
      781 aaatgacaga gattgcagag aaactgaact atgaccgcga agtagttaga gtttggttct
      841 gcaataagag gcaagcactg aagaacacaa ttaaacgctt gaaacaacac gagcctgcgc
      901 cggcagttcc tatggagcct ttaacagact ctctggaaga aaactcttaa aaacaaacaa
      961 aaccaaacca cacacaacta accccgcacc aacagaaagc taactgtttg aactctgtga
     1021 acgctcgcca cccttgtaag ta
//
LOCUS       KCLA01001350             256 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21957upu ultra-conserved element locus uce-6274,
            sequence.
ACCESSION   KCLA01001350
VERSION     KCLA01001350.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 256)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..256
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21957upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>256
                     /note="ultra-conserved element locus uce-6274"
BASE COUNT           88 a           49 c           61 g           58 t
ORIGIN      
        1 gggagaagaa ccaaagcctc cacttcctcc tgcaagttca ttatcgcctc tctaaagcat
       61 gacggtggtg tgaaatgggt tagacgcacg gatgcctctg ttaacggcca aagaaaaaaa
      121 agtcgcacat cattaggaat ggaataaacg ataccgaggc acagagcaga aatgatttga
      181 ttagcaattt ccagttttga aaagacctgg aagagaacca aatgactata cagaaggtgt
      241 gatggagttc ttaatt
//
LOCUS       KCLA01001351            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21972upu ultra-conserved element locus uce-773,
            sequence.
ACCESSION   KCLA01001351
VERSION     KCLA01001351.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21972upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-773"
BASE COUNT          338 a          214 c          265 g          256 t
ORIGIN      
        1 aggaaacaaa ccctaaaagc gaggcagtgc tccacacacg agcatcgctc agctaacaag
       61 gattaagtca cacttcaatc gctcctttga aaccgctgct atttgcaaag ggcatgctta
      121 caaaaacacc ctaaatgcct ttttttcaac tccacaggcg ctctgtggca agagaactgg
      181 agaaacggag agaaaatgca ccgctgctta agcaagaaga gtaaagcgag ggattgctga
      241 aagtggaaaa gagcaacggt gtgagctctg ggctggaaaa gcagtgcagg aagtgagcac
      301 ggcggcaata aaaacaatct tgagagaagc gagtggtatt tttattttgc ttgggctgac
      361 gcacagagag aagcgcgctt tgtagggcga ggtgaaaagg aaaacagtag cggcagtaaa
      421 aggaaatggc caacagtgac ttttatttac aattaccaag agacgggcta ttattgacca
      481 tatgtgccac aatcgctctc cttatcatgg gttggccgtt gtgtccattg ggagctgtta
      541 atgaactggg taattgagct gctgacatgt gttaccaaaa caaaacaata ggaagaagag
      601 acaaatgaac attttatttg ccaatcagag taggttccgc ttttcagagc actgcgccta
      661 agtaagtggc tgaatatgta aaccagtgca ttgaaggcag gcagatgcat ggacaataat
      721 ggttaactga cagcccaggg cccatctgtg cttaacagtt tgttaaagaa attacttgac
      781 ttgctaagga gacaaatcat acagctgccc tgagtgctgc gttcagagag ataaatcatt
      841 agctaaactg tttcatgctc aaaatgacaa tgcgtattac cagttacgcg gggccgtttt
      901 gtcagcacag cttgatgcag ttataaagca gcacaactgt gacagctcac ggctattcaa
      961 tgatttcggc ctccgagaga acgacgatgc tgcaaaaacc actttgtcaa taacaggcaa
     1021 ttcactggct cttctttttt aattgttttg ggaatgatga agcaatatgg gaa
//
LOCUS       KCLA01001352            1024 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 21988upu ultra-conserved element locus uce-5256,
            sequence.
ACCESSION   KCLA01001352
VERSION     KCLA01001352.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="21988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1024
                     /note="ultra-conserved element locus uce-5256"
BASE COUNT          334 a          211 c          169 g          310 t
ORIGIN      
        1 tagaatcctc acgcttcaca aagcacaggg tgtattctcg atacagaaat acttgtattt
       61 aaacccctat ttttaatata tattaatcac attaatacat taaaagtgtg tgatttaatg
      121 catacacata aatcgctatc aatattaggt tcgtaaagga agaaacagcc tttagtcaga
      181 aaaatcttaa cagtgacaaa atacgtcgct cagagttctt ttgtactaga caaatccagg
      241 ctcatagctg atcataaggc acgtagagct cctgcaacct cctcataaaa tcactggaag
      301 gagcggttta caacagtgcc caggattaag ctcccagcat ctcaatataa atgctattaa
      361 gaaataccaa gaattagctg aaaacaggca acgcttcaga ttgtagcaaa aattacttca
      421 cctaaattta agttaatgtt cctcgaatca aagactttac tttttaaaaa gtggatacct
      481 gcggtccatc tctggcttca tagaagtcac ccactcctat ttttgcactg aagctgaaat
      541 tgtcccttga gatatccatt attccatttc tgctgagata ctgaaaaaat cacatatttt
      601 tccacttcag cttgcaagta attacaaccc agcgctgatg tacagctaac tttgtgagtg
      661 taatgttttg catattctag tacaggtata tgcaattata gtgaacatca gtaacagatc
      721 gagatacatt atgcctcata tcacacggta ttttggaaat agtatcttta ctggagggga
      781 aaaaccggta ttttttaatt gcaggcatgc tttgtagcat tagagcacag aaagggtacg
      841 tacctttact acttcaggat actgtctcag cttctttcca caaggtgcaa aatacgcgac
      901 ttctccttga aggcgaccac caaagtttct tattcgggtt tctctttgcc agctagagta
      961 ataagaaata gttgcatcaa taaaaacctc ttccacaacc attcatgtca cttcaagatt
     1021 ttta
//
LOCUS       KCLA01001353             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22004upu ultra-conserved element locus uce-3693,
            sequence.
ACCESSION   KCLA01001353
VERSION     KCLA01001353.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22004upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-3693"
BASE COUNT          172 a          128 c          121 g          178 t
ORIGIN      
        1 cttctttttt tttaaggcta tcgcatttac gtaatcgtcc tcttattagg gagattctgc
       61 tgaactgctg acaatgatgt acagtggtgc ttcgctggcg tgacgtttgg ggaaaacgat
      121 tctgctgcac caccacacaa aaccaattag agaactattt tctgcgacag gtcaggaatt
      181 tacattgttt ctcatggaaa gatgtgcttt ttaatttctt tattaagatg acatccacgt
      241 cccttgcgac ttttagggat gacaatcatt tgctcatcac atgggaaagt acaatcagcg
      301 aaatcgtatt accagtacag ggcaatgcca gaaactccaa gcatcgttct gcattttcca
      361 aatgaactag tttgagaacc aataattaga acaatatata tcgatagaat tttttgacag
      421 gcccttcaga cacccaccgg ggagggaaag taatgatagt ccctgtgcag caggctatgc
      481 tgggtttgcc caacacagaa acatcatctt tgtcacatca gtcagacata ttaagatctt
      541 cggattggga catgatagga agtactaacg agcttcagct tcttcctcaa cttctgcat
//
LOCUS       KCLA01001354             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22019upu ultra-conserved element locus uce-6764,
            sequence.
ACCESSION   KCLA01001354
VERSION     KCLA01001354.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22019upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-6764"
BASE COUNT          264 a          163 c          122 g          274 t
ORIGIN      
        1 cattttagat tgtattttta tgtaaatgtt tactgctaca tatgtttttt gaattaattt
       61 aatctccgta aagctctttg ctttttttac attctttgtg agcaaagaca tttaagcaaa
      121 tagaactgaa gaaaccgaaa tattgttaaa aaaataaaac tacaaacagg gtagggtaag
      181 aaaaagtaaa ctaagccctg cagatttctt acctctctac accatctgtg cagtattgct
      241 cttaggcctt ttacattggt catcctggga acaaagctga aggcagattc cagcagtttt
      301 tccattcact attcattcag aggttcatca gctccatatg gatccagcca actgctgtgt
      361 taaatcagag ccttttccca gaattgacat ggtaatgaag tcatggtatt gctcacagaa
      421 aaggcctcca taggtatttt cctctctaac aaatccagcc ttttcacccc attcactccc
      481 taaaattatc tcataacgtt acaacatctg tgaactgggt tttcgccttt taatgtctag
      541 catgttttat tacatgacta tgcattacat actggttaac aagactccta cacaaccaag
      601 gaaataaaat aaacttgagc tcttcttttt ccagctcaga ttcttttgtc cccttttaat
      661 ttatatctgc tatatatctt tttctccaga tacagctatc caaagtcgtg atgtataata
      721 tggaattcga tttttcagat ttctaacaga aagtgggttt agaaatattc caagagaaaa
      781 aactgtttaa ccacaaaatg gtaaatacgc gaatacaaaa aaa
//
LOCUS       KCLA01001355            1130 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22035upu ultra-conserved element locus uce-2865,
            sequence.
ACCESSION   KCLA01001355
VERSION     KCLA01001355.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1130)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1130)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1130
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22035upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1130
                     /note="ultra-conserved element locus uce-2865"
BASE COUNT          295 a          228 c          272 g          335 t
ORIGIN      
        1 tgatagcaag ctgagagcaa catgagcaga ttgtaatctc cctcttcatt gtatcttaga
       61 gctgtattca ggaatatttg gcctaatttg gctgaaagat tttttgcgaa taccctagaa
      121 ggtacatagg tgctttgtta atcataaaat atatgataaa atgacagtgt ttgattgttt
      181 tttaaattga tcataatctt gacctgcctt tggcaggtca gaattttttg aaatcctgtt
      241 cttcatgagt agtcactatg taaaggagca ttctgagtca tcagcagtat gttcatgggc
      301 tcattttgga actttgaaac caaacagcac caaccagttg agaagaatct cagtcacctg
      361 tgattagatt ataaacaagt ttttttcact tcttccagga ggtgtaggga tgatgtgctc
      421 actgagtgaa caaggcaagc agttggcagt ccaggtgtcc aacattctgg ggatggatgt
      481 gtgcggcatt gacctgctga tgaaggacga cggttcattc tacgtctgtg aggccaatgc
      541 aaatgtaggt tttattgcct ttgacaaggc ttgtaatcta gatgtagctg gtatcatagc
      601 ggactatgcc gcttctctcc ttacccccgg tcgcttgacg cggcgcatgt ccttgctctc
      661 tgtggtgtcc acggcaagcg agactagcga gccagagctg ggccctccag ctagtgccgc
      721 tgtcgacaat atgagtgcta gctccagctc tgtcgacagt gaccctgaga ccacggagag
      781 agagttgctc accaagctcc cgggggctct attcaacatg aaccagctat tagccaatga
      841 gataaaactt cttgtggagt gatgccacat gtaaatagat gaccaacaga actctctctt
      901 gtaaattttt ttttttaacc aacttgcaat gctgtttatc agagaagctc agaggagtga
      961 ggaagggggg cagtggggca gatcaagaga gccaaaggca cacatgatgt cgttgctgcc
     1021 cctgtttttt tgtagaacac aaaaattgta tcattcttta gcatcagttt tctaatcaag
     1081 atgctcagtt cacaacctaa gtgggagttt tatttgggtg ctgctttggt
//
LOCUS       KCLA01001356             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22051upu ultra-conserved element locus uce-3277,
            sequence.
ACCESSION   KCLA01001356
VERSION     KCLA01001356.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22051upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-3277"
BASE COUNT          205 a          145 c          135 g          202 t
ORIGIN      
        1 gtgcaagagc acagagctgc agaaatacct ccagagtgtg ctggaactgc atcaccatct
       61 cttacctctt tccactccct taattcctcc tttctgggga agaaattgat tccaaatgtg
      121 ttttcttgac cccttactcc atacatgtta gcacctaacc ctaagtgatg tttctacagt
      181 cttgcctgta tttacagtaa ttatatgcat aacatagcat attattgtct ggacttcctg
      241 tttaatcagt acagggcttc ttacaagagc agctgaaaag ggcaaacaaa attaaagctt
      301 tatataccaa aacaagtttg atttgctaag ctcccagcat tccaaagtac acagatttgt
      361 tccaccaagt tttgcgatgg cttgcagatg ggcaatgatt aatcagagag ctaactgtga
      421 agtagtttgc aattaaactg gaaggctctg aagcatgcta attgaatcag aaaattagag
      481 acactgagca gtaattggct atttctcatg cagcaggtgc caggccactc atctgtggaa
      541 caaggtattt aaggcacatt agcactagta aaaatacttc ttgatatgga acagtcagat
      601 tttctgctta ttttcaccat ggatgtcaaa acacacagct gtgatgtcta gtgcccacag
      661 ctcgagtggt gagagtgtga tcatcat
//
LOCUS       KCLA01001357             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22066upu ultra-conserved element locus uce-2433,
            sequence.
ACCESSION   KCLA01001357
VERSION     KCLA01001357.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22066upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-2433"
BASE COUNT          237 a          139 c          164 g          225 t
ORIGIN      
        1 tttcccctga gaatacttcc ctgatatttt ttcttttact gtatgatacc cagtaatttt
       61 acttattttc acatcctttt aaaaacattt attttaaaca cagctgcaaa atgactaaag
      121 gatgatcctg atgcaaactt tgacatttac caaaataaaa aaaacaatta aaaaaaccca
      181 aaagaagctt ccaaacaaat tttgattggc ttcattcaga caggagacac tgaatggggt
      241 tacagagtct gagaacaggg gagaagaaaa taattttggt gtgttgctag aatctagtaa
      301 atgcatgtga aattctacca tagagtttgt tttcaatcca tgtggaaggg agggttcgag
      361 ggaggggagc attattacag tccacgagtg gtgtctcctc ttctgaaagc ccatcatcat
      421 aaagtaagga atcggaaggt gtggaagctg caagatctaa gtagtcctaa aaagtgaacc
      481 aaaaaccagc tgggttaatt tactggcagt actgtaaata tgcatgtgct ttctctaaaa
      541 caaggaacta cagactccat tgtgtctctc tggtgtctga gtaggctgcc cctttgtgca
      601 accatagcat ctttgcaggt atctgatttg ccagaactct agctataata gagatgattg
      661 aggccccatt cctcaagaca ttcaaggtgt gatagggctc tgggcaatct ggtctagtta
      721 gtgatgtcct tgcttgtgca gggggattaa actaaccttt ggagg
//
LOCUS       KCLA01001358             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22080upu ultra-conserved element locus uce-5934,
            sequence.
ACCESSION   KCLA01001358
VERSION     KCLA01001358.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22080upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-5934"
BASE COUNT          178 a          106 c          104 g          186 t
ORIGIN      
        1 ttttttatat gtctatatag atttttttcc agcaggactt ttcctcctgt agatgtataa
       61 ggaattatgc atcagacaaa agcctcataa actgaccatt tgtcctttgg acacaatagc
      121 ctgcccagcc cctctgctcc tcctctccaa ttatgtgtga ttagtctcag tgtgttgtgt
      181 caagaagggg gagtgtgctg agtgcttatt atctgtttag gtacaagaag agcacattta
      241 ggttctgact atgaatggaa agtgagcctt tatcaggact gaaatctaaa tgctactgtc
      301 ctagaaattg cttttaaaga aaatacaccc ttttctgata aattccaagg aacactctaa
      361 cactatagtg taatcaaact gtcttccttg aattagttgg tattgaggcc caagaatttg
      421 ataaacattt aatgtgactt atcttgtact gggaaaggca aaaatcctac aaagaaagag
      481 gagcaatttc ttgttttctg atagaccatt ttaatgactt ctcaggaaaa taacatggac
      541 cattaaagaa tcctatagag tctcttaaac cata
//
LOCUS       KCLA01001359             982 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22096upu ultra-conserved element locus uce-3676,
            sequence.
ACCESSION   KCLA01001359
VERSION     KCLA01001359.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 982)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 982)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..982
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22096upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>982
                     /note="ultra-conserved element locus uce-3676"
BASE COUNT          295 a          178 c          200 g          309 t
ORIGIN      
        1 agccagtaaa tgttcctgca ttctacttgt gtacacttct tcaaaatggg gaatcctgtt
       61 tgaaaacctt ctgtcataaa gctatgatgg gagtccgtga gtaaaaactc agtgtgatag
      121 atattttggg agatgctcgc agcgttggat gatgccaatt cagtcaagta atcttttccc
      181 taaaggaaca gggaaaggaa aaggcctgtg agtttgatat tagtgaccaa tacacagttt
      241 tttggtgtct acaagagatc tgcgggtatt ttcctgtagg aatgcgttta gtttcataac
      301 cttgtttcct aatgcaagtg actgtgatcg agcaacctga gttgaatagc cagtccttta
      361 ggtctttcac aggctatgaa tacagcaaga gtactcaacc cttctgaaga tatgcaaatg
      421 taggcattta aaagatttac attcatcttt cacaggcctc agaaatataa atatgaaata
      481 tccagaacct tgtcacttca gtaataatta agctgatggc ctattatgtt cgattgcaaa
      541 tcaatatagt atcttttggt gccacttgag ttcttgaggg ttggcttggg gccagcacta
      601 gttatacaat tgaagagctg cagctgcatg gaaaacttct ctgccatttc cattcagaaa
      661 gaatagactg gtaacaatgg tggccagcct cttcatagta attgtctgca agtacacatt
      721 ttgaaatagt gtttttgttc agcaggtgct gttattttag tttaatttga attttgaaat
      781 atggaggata gaagaagcct aatcttaaca gcatctaacc tacagctgtt cggaacagga
      841 cagcaaacga catatgctgc ttagataaaa atcataattg cttattcttc ctggcatatt
      901 agcagaccac tgctgagcct ctaaaattat ctagcatttt caggctttta ctttacaaag
      961 tgatctacaa tactctggaa aa
//
LOCUS       KCLA01001360             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22111upu ultra-conserved element locus uce-1800,
            sequence.
ACCESSION   KCLA01001360
VERSION     KCLA01001360.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-1800"
BASE COUNT          258 a          158 c          195 g          262 t
ORIGIN      
        1 aagaacaatt acaggaggaa tgcttcttag ctttaaaaga tgacctgtgg ctaaataaga
       61 atttttgatt aatatttgct atttggcaag ttggctgcga cctgaaatga gatggttact
      121 tctgcaatgg gagtgccttt ggtacgaggt tcgccaagct cccagggagg ctgcacaggg
      181 agtaatttcg gcgaattgta agcggacagt gagtccgcgg ggagcgctgg caatcatggc
      241 ggaaacaatg tttgcatcga tcagctgtca tggtgattta tggcttcatt ttgctgtaat
      301 ggagaattag tggaaagatt atcagggact caacactttg gcttgttacc catgtccaga
      361 cgagcaattt gtctccctga agcagtgaaa tacttgtgac agctccaaca cttgccctaa
      421 ttcaatcaag agaaaatgtt ggaattaatt tgttacaaga aaatttaaat atgttcagca
      481 aacagtaacc gcagagcagc aggctgattt attgtgctcg gcaagatatc gatccacttc
      541 gatctggccc atgttgaggt tttaatgtgt aataatttcc aatttaaagc tccttttcaa
      601 gatcacgggt ttaaagagag ggcaggctgg gtctcaagac ctgattagga gcctgttgca
      661 atggctttgt caaaagcctg tttgaatgta aattcatagt tatcttttgc actatcttta
      721 atattcttga catggatttt attgtgtgtc aaacctcagg ccagctgcct gccacaacca
      781 ttaatgaaac atcttaggaa ataaatctca gtctttatac aatattttta aaacctgaaa
      841 cattagatgt cagcaaaaaa ggtttaacat cat
//
LOCUS       KCLA01001361             951 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22126upu ultra-conserved element locus uce-8040,
            sequence.
ACCESSION   KCLA01001361
VERSION     KCLA01001361.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22126upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>951
                     /note="ultra-conserved element locus uce-8040"
BASE COUNT          198 a          274 c          215 g          264 t
ORIGIN      
        1 ggtgtggggt gggtgagcct tggggttcag gcagctggca tccctctgta gctcaccaag
       61 gacctcatcc ttcctctccc accaacctct gcatctctca ctcaacccct ttgtcattcc
      121 ctgatccact ggtgcatttt ttatcccttt ctccatcttt ccctccttca gcttgcctca
      181 ccctactttt cgttttctct gccccagcta cctcctcctt tttttcctcc tcccgtcgct
      241 cagctatgcc tctcctctcc gcactcccct ctccccccgt ctccccctgg ctgcgctgtg
      301 ttactaatgt gcagtaatgg tatggctgga aagtcatttg tgcacccctt ctcttgattt
      361 tttttcctgc agtattatta aaactgctcc atcaccagct gtaatgggag cgtctgtatt
      421 ttctccctcg cctggatccc tgacatgaca taatgcctgc cctcaccaag acgctataac
      481 accgaggtaa ttgaaacata actcaccgta aattacaggc cattgttcca ggcagggccc
      541 cggccatgct tcctggagct cattccaact ggaagctaaa cgttgcttta aaagggatgc
      601 ttaagcaaaa caaagccatt taaagagcaa agcaaacgtg gagagggagg ggagcacgga
      661 gcctgggctc tttcagagat gcgggctctg cttctgggac ccagcagtca acgggcacct
      721 gtggtgactt ttctgtggtc tctgctgggt gaaccggtgc gtctctgagg tgtcctcaca
      781 gaaccaagcg ccagcatcga ataaccttct ctgttagaag agaggttgag acagggtggt
      841 ccatgtaaat aacttcctag ctaaaaagta aaggacaagt cttatgggga gcagctgagg
      901 gaactggtgg cccttatttc attgtacagc tgtgtgaaag gaggttctag t
//
LOCUS       KCLA01001362            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22141upu ultra-conserved element locus uce-1277,
            sequence.
ACCESSION   KCLA01001362
VERSION     KCLA01001362.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22141upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-1277"
BASE COUNT          344 a          206 c          196 g          309 t
ORIGIN      
        1 gtcttgtcct tggcaaaaat ctacctatgc caagtatatt atggaatttt agcacatgcg
       61 ttctggcttt agttagcctt caacaatgta gtcaaaatgg aagcaggcag tggattgtca
      121 caacacatgc cagcatctga gcagaagagc tttcacagga agttgattca aatcatttct
      181 tccccacaat ttcagttgaa agtgttaaac actgtaagta atcaattcag tactgagtac
      241 cttgtagtac ctctctccaa actgtaaaca tgctgcaaca cagaatcatt agtgctacgg
      301 tacccacgtt cccactttaa aaatacatgc tttaaaacta accctaactt ccttctgtgt
      361 ttgtattttg tactacaggc acagagcact agaggaaaca agaaacattg tgctaacatg
      421 actatagtat tgatgaataa gaactataac ccccaggcta agctgccaaa taagtagtga
      481 attaatttct gtaaagtact ccaatattac aaaggtgtgt tgaaaggtgt ctgctcatgt
      541 ttcaaattaa acgcactgct ggtcagcatt agcacctcag ctttgaacag cagccatttg
      601 cctataacac ttcaggggct gggaaaaacg gatttgccgt tcacactgga ataattagaa
      661 catgtcagga agaattaatt tcctcatttt tcaaaaggat acacagaaat taccatgtta
      721 ttatatgaca gggtcccttg gagaattgta ttaaatttaa tttctagcgc agcccacaca
      781 acaaattaaa gtcataaata agatggaaag aagcaggacg cagagcatat gtttatggca
      841 atgagtgaag ccaagggacc agaaacaact atcttcattt cattttattt aaatcagcca
      901 gacactgtgt gtctgaatga cagcacttgt taatggtgct gagattatag gctccttaat
      961 tttaagaaac agaagcagtc acttggtgtt tgaaatgtac ttttttatac aatactggta
     1021 ttaaagttgc tctctctcaa ggcagcttct catgg
//
LOCUS       KCLA01001363             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22157upu ultra-conserved element locus uce-2455,
            sequence.
ACCESSION   KCLA01001363
VERSION     KCLA01001363.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22157upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-2455"
BASE COUNT          201 a          140 c          169 g          201 t
ORIGIN      
        1 gggaaggggg caggacaagc aagtgcgtcc cactgacccc gggaaggggt ggaaagagcg
       61 agacacagcc ctttctgtta atcccacagt tccgtgggtg caagcgccat tgtcacctct
      121 cactgcatca gtgcattcac aaagacaagg agcacaatcc cagcagtccc agagcagagc
      181 ccagccagct ctctttggaa agcagggtac tgcagggatg ggaaagggag tacacatggc
      241 ttcagaggtt gggtgtatct ataatttctg ctatcctgca aatgttaaaa gtcactagaa
      301 tattgtactt tccgctactt caggacgttc taatgaacca atgtggcaag actactggac
      361 ttaatttaat ggtactatat attaatactc cttattatat cacgcttgca ctaaagacag
      421 ggagtgagca gccctctttc gagtgcattg agttatgaat agaggtggtg gaagggtatc
      481 taattgtatt atcacatgta ttctgagtta agaatccaag ctacattgaa atcagcaatc
      541 cagggttggt aatgttggag gacacattca tttttacctt gtggatgcat agtgctgtag
      601 gggtcactgt tgtatacagt ctgttttcta tttgttaata aatctacagc atcattgcat
      661 aattcttgat gttaataaat ttgaataatc aggtttcata caagctggct t
//
LOCUS       KCLA01001364             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22172upu ultra-conserved element locus uce-5803,
            sequence.
ACCESSION   KCLA01001364
VERSION     KCLA01001364.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22172upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-5803"
BASE COUNT          121 a          120 c          102 g          135 t
ORIGIN      
        1 gagtccctca gacaaattct cagctttctt acaggctccc ttcagatact ggaaaaccgc
       61 tagaaggtct cttctccagg ctgaacaacc ccactccctc agcccgttac agagaacagt
      121 caaggtaagt attgcaggac tgttttccct ttgaagcccc tacgtctctc ctcagtgctg
      181 tcgtacggag aagtaccgcc gaacactgga agtgttcagt cagcatttta aactattatg
      241 agctaccttc tgaaccattg ccaagttaat agacaatgaa agataatgag cttgaaattg
      301 ggtgttaaat tgcatttttg gttctctccc ttttgaagtt ttaactgttt cctgcagcat
      361 catctttgat gtctcattat ggaaacgtct atttttaggt ggcaaaaaaa gtcaggcgtg
      421 ggctgaaccc tcgctcctcc cgctacacgt gtgcagagtc ggggctgagg cagaccca
//
LOCUS       KCLA01001365             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22187upu ultra-conserved element locus uce-6021,
            sequence.
ACCESSION   KCLA01001365
VERSION     KCLA01001365.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-6021"
BASE COUNT          154 a          104 c           81 g          146 t
ORIGIN      
        1 gcacaaggct cgcctctatc tcggtctccc ctagaaaaga atgccaaagt gttcacggag
       61 accgctgcct ctttatttta ttatttttct taagtcccag gatgtttgat acagttaaat
      121 acctaaattg aaacataacc gaaaaatatt attagcttta tctgctgaca caagggacac
      181 aggttaaaga atttttcatt taatttgata gtgtataaag cacttaaggt acttgatgat
      241 ttattgatca aatagaaatc agggcatcta acagctactt attcaatccc tattcacacg
      301 attaaatatg aaatgaactt ttttcccctc caatttgcgc aacaagcctt acgctacgaa
      361 gaacagaagc gaacagctcc tcagacataa atcttccgct tttgctaata tgagttactg
      421 cgagtcctct gaaccgccac tgaactgtaa acactgtttt aatggacagt aatggcaccg
      481 tgtga
//
LOCUS       KCLA01001366            1104 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22203upu ultra-conserved element locus uce-7376,
            sequence.
ACCESSION   KCLA01001366
VERSION     KCLA01001366.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22203upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1104
                     /note="ultra-conserved element locus uce-7376"
BASE COUNT          287 a          276 c          243 g          298 t
ORIGIN      
        1 ggctcctcgc ggcggccgtc aggatatgca tgtttgtaga agcagttccc tccgaacggg
       61 cagctcccac ggccttcgtc aaaatacctg catggcttgt tgctggaaag gaaaatattg
      121 cagcccttac ttgcagcaga ccccagccaa acttcagaac tgcatctacc tgtagcccaa
      181 aatgatctcg ggcaccgttt gatgctgaca gggttttgtc agtctaacac ctacatgcat
      241 caatgtactg ttacacaacg tgtgtgggcc gaggcatgca cagagactcg cgcctcgcac
      301 tgcctcatcg ctaccccacc agtgttttac acacagaagg gcaagatgga ggggaaagaa
      361 cacgggaata gcttcgtgat tgttggttca tgcatttgtg ggcagatagg caagaacaca
      421 cttcacgtgt ggtggttgaa aggaggtgtg agagagcttt atatcacccc ccttctcctc
      481 caggcgtgcc tttatctctg cagtctcaac tcaacaaaag gctgcagtgc tcatacctca
      541 tagcctcctt gtatttctga atgagtttct gcttctcttc cttctcctcc acccagtact
      601 cacttggaat gacaaagtta gatgtgatcc gacattctgg gcaggacctg gggaatgaac
      661 agactgtgct gcaaaattcc acgttacagg gctctctctc ccctacataa caagtcatgg
      721 catacatctg taaagctgga tgtactgtac ccccaacact tttcagtcta gcttctctct
      781 tacgcaagga cagcttaaac cctagtcttt aagaactcaa tggcagccgg tgagcttgga
      841 tcagaaaagc ttgaaaaaac acttcacaca gactcctttt tctttacaat taaatagatt
      901 tattttggct tgatttctat atttatttga ttgtagcttt gtttttctag aacagacttc
      961 aaatagagaa atgttttgtc aactgattaa cgaactaggg tggcaacgaa tcaagaagcg
     1021 tacattctga ttcagttaag ctgctttcag attcccggct gggtgtccaa gacgcgaaga
     1081 gtaaccgttg gacaacacgc cact
//
LOCUS       KCLA01001367             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22219upu ultra-conserved element locus uce-186,
            sequence.
ACCESSION   KCLA01001367
VERSION     KCLA01001367.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22219upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-186"
BASE COUNT          288 a          226 c          169 g          309 t
ORIGIN      
        1 tacctctgtg taggaccata atggacctac atagcttaag tggactgaag aaaccatcta
       61 cattagagat gctactgctc tttatagctc tgctttttac tgtttttcct ttacttttag
      121 tataaaagac caaccccatc tctgctatag ctgctctgaa gccagcagtt acttccggga
      181 tgaatttgac cctttttatg cttctcaaga acctaagtaa caatatctct gttgcagctc
      241 ctatgctgtt cagagaatgg atatacaata catctttgtc ttcctgctca taacgagcag
      301 tgtaggtcac ctgcatcatt aacatttgca gctgatgcat ttgcctagtg tgtatacacc
      361 tcttgaaact gcacagacct tcccattgtt ttcagaacct tgatttttct tagcattatc
      421 atcacccaaa tgtatttaag gatgaaacta ttagaaacac aattggtgaa ttaatgtcat
      481 gaggactgct gctggcagct catcaatttt tgatatgcca ctcagacaaa tgaaacacaa
      541 gccacccaga acaaggggac cttttgacac ttcaaaggaa acccctatgg gtggtttcct
      601 cttgaagctg cactaaactg gctcaatctc ctcagctgga agctgccaat gtctcattaa
      661 cccctaaaca ggccctgcat gagcttttct tttcagctat aattatgcca tgcactcccg
      721 ttatgctgta ctgaattgca acactgtcac cagcacatta taaacatcca ccctaattga
      781 aaagcagatt agacttgtgt taattagtga aaaagcccgc ccacttgcat gcattatgat
      841 tgcctcttaa atactgagga tgttgaaatc cctcagaaag acaaggcaga cttaattgca
      901 ataacctgca aattaagttt aatttacttt aaatttaccg gtttagcagg ctcatttgat
      961 ggtgttaatg ttctagcaaa ttaattatct ga
//
LOCUS       KCLA01001368             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22234upu ultra-conserved element locus uce-7906,
            sequence.
ACCESSION   KCLA01001368
VERSION     KCLA01001368.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-7906"
BASE COUNT          203 a          152 c          204 g          216 t
ORIGIN      
        1 tatattttat agacatttct atattacata tatattaata tatacttcaa gaagtatctt
       61 taaccacgca gaccaccacc cgcacgttgt tgctgcagta gagacacaga gaccaaacag
      121 ggcatgtatg tcaggatata tgtccccata tatatttgaa ggggaaaaag aacgcaccct
      181 aggctgtcca gattgaattt ggctgcttgt atttaacgct caaaggcttc tatagtcagc
      241 ttgctccaaa gagtggcgaa gtcctggttg cttgtgcctt gaatcagaaa tgcatgaagt
      301 gcagctgcag agataattca ttctccccaa aggcttgggc tgagcaaatt aggtgtcaat
      361 ggggtgcctg tgcaggcagt actctctcta attagtctct tgagcctagt tggtggcggg
      421 tggaagatga tctaatcaat gggtctgcgt gtgatggtag gtggagaaat cccagcaagc
      481 agagccgtct cccacaggtc actcacctgc acagcgggag cgctcgtttt ccttcttcat
      541 ctcgtccgtg gtgtgatgct gacagttggt tttaagaaaa ttgaatcccc caaatatcta
      601 gttcataggg caccgaggtc agaaggaagt tgcattatgg gtatcggtgc tacaattggt
      661 tggtatttat agcagtgggt tggctgtaga tgggatcggg gagcaaacgg tctggatggt
      721 gtttggttgg caccctgaaa cgacttctct gatgaagata gggataaaag atgtg
//
LOCUS       KCLA01001369            1069 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22249upu ultra-conserved element locus uce-938,
            sequence.
ACCESSION   KCLA01001369
VERSION     KCLA01001369.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1069)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1069
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22249upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1069
                     /note="ultra-conserved element locus uce-938"
BASE COUNT          312 a          215 c          227 g          315 t
ORIGIN      
        1 aagagattgg aatcatctcc tggcttcagc ctgacactca gaccgctgaa gtttgggatt
       61 tgctacccct cggaactagg tacaactcct aagaccagcg gtgtgtgacc gataccgttc
      121 catattcaag ctggaatttc aagcttgact gtacagttcc gaaggaaaac acagcgatac
      181 gaattcattt ttctgcgggt acccggacgg gcccgggcag ccagtggggt agaagccccc
      241 aaagcaactc tttctgaagt cagttccatt tctgtgtgtt taagctatga attagttcat
      301 ttatatttac ttttatgaag ctgattaacc agagcttctc tatctgatga aaatcatttt
      361 aattgtagtg ttaggctcct gtgtaatatc cattacatta tgaactgttt aaattctaca
      421 tgggtattgt gtaaattggc cctttgtgag ctgagaagca attacgacca aacagctctc
      481 ttttaaatgg ctacagaact ttgtggtgtt gttcaggaca atcagaaaca aaggaggctg
      541 tttaattgta atttaatgga atatcaagga gtccatggca ttagatgctg gcaacagaga
      601 gcaggagaga aaaattaact gcaattatgt ttgattaaag ctatccttct caataatcag
      661 ccatcctgac aggccatggg gctctagtgg gtttcaggat ggcaaaaggt gttgagcaat
      721 attagggcca ataaaggaga tattagcata gctaattaca gcactgcaaa acctgtaaaa
      781 gggacctctg tgtattgtaa tgtgtgaaat aattggccga ggccattatc aattacataa
      841 ggaatgaatt tggtttgtca gagaaaagct gatgagatgc atttcatttg acaccgctcc
      901 tttccctcac gtttttgtgt aactaaggac ttatcagctt ttatcaaaag ctgcaactta
      961 ccagtggcca aatcactgat aaaattatct tgccagcaag tgttagataa ttaatacaac
     1021 tcatcctcac tgccttcccg gctactgctg ttcctcacct atccgaagc
//
LOCUS       KCLA01001370             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22263upu ultra-conserved element locus uce-3442,
            sequence.
ACCESSION   KCLA01001370
VERSION     KCLA01001370.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22263upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-3442"
BASE COUNT          184 a          143 c          154 g          188 t
ORIGIN      
        1 tctgatgaat agctgtgcac caagcaatgc catccatccc agccgattac agcacccaga
       61 aacatggtga attagtttcc cgctgaaaat gaatggtcgg cccgggcacc ctgataaggt
      121 gagacgcaca ttgcggtgat tagctgggtc agtcctgaag aacattagga attcacttct
      181 gctgctctga ttggtaatta agtgactcgt ctagtggccg acagtcctgt gtgcttcccc
      241 aggcagttgt tagttcttgg aaaaccactc ctgacaaagc gcgctttgcc cttggtacac
      301 agataatgag gctcaggctg acaggtgtgg cgcgattaga gctccgctgc gcgccgctcg
      361 ctcggctaga gccaccccgc agtaaacaca ctcattacaa cccgccggtc cccagaggca
      421 aagcatgttt gacattatta attggctttt ctgtaaaagg agtcaaatag atgaaaaggt
      481 ttatcaagct gaaataatta attttgcctg aattcgctga cagttcagtt ctctcgcaaa
      541 agaccatttt aagggggttg tttttttttt tttttgaatt tcaaagttca aaagacataa
      601 tggttgtaaa agtggagctt tttagtaaat tataattaaa gggaatttaa ttaatttaga
      661 cctgagtaa
//
LOCUS       KCLA01001371             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22278upu ultra-conserved element locus uce-1775,
            sequence.
ACCESSION   KCLA01001371
VERSION     KCLA01001371.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22278upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-1775"
BASE COUNT          272 a          159 c          168 g          270 t
ORIGIN      
        1 cccctctttt cctgctgctc taactcagct tatgagcctg ccctcactaa attaaaggaa
       61 aaacactctc tttagatgcc attcctctgt atgcactcat gtctccaagg cttaagatct
      121 aacaatcctc taacaacttg gcctggaaag atgaatagct tttaaaacat tgtgtagatt
      181 gttttaattg ggaagggagt aatgggttta gaagaaccgg aacgtttttt aaccagcttg
      241 attgcaagga ttatcacatg cacgttgaat tagacaaatc cagggaaaag agactaattc
      301 ctgcctttcc tgggcatggt agtgaaaggt gcaactaaaa gcaaacagca caaactgttt
      361 taatcaaagt agtctagcaa gaagcaatca attaaagaac agtctgattc tctgtgacat
      421 caatgtatga aaatctgtta gacgccagat tgtgtctcaa gacacatatg atgaactgaa
      481 caaaatgacc tgctaatagc ttttacgggt aataaatgca tcatgttatt ggtaattcta
      541 cagatggtaa atcaagctaa tatccagact gaaacaagct acttgttaaa tagacttcaa
      601 aaatattctt ccttgttatt ctgtaatggt gtcacacaga gaaagatgat tgttctttga
      661 ttttgagcat tttaaatcaa ggtatgtttc agcatgcagg caatttaatt ttcaaattct
      721 ttaaaggaaa ttcggagcga tcggggcttt tgtgtctaaa tgttctcatg gcgattgttt
      781 cacacgtgtt ctcacattga tttcacgatg cctactgata atgtgaagct gctcttcagg
      841 atgcaggact ttctgttgta gagatgcaa
//
LOCUS       KCLA01001372             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22294upu ultra-conserved element locus uce-956,
            sequence.
ACCESSION   KCLA01001372
VERSION     KCLA01001372.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-956"
BASE COUNT          206 a          111 c          184 g          226 t
ORIGIN      
        1 ccagaggaga aaaaagaatt tagaaaaaat aaaaaaaaag ataaacaccc tttcagtgtt
       61 tgcagtcatc tgtaattttt atctcttgac ctttaaacgt aagcagcagt aaaatgaaga
      121 actatggcag tcatttaaca ccctgcctgt actaactggt ttctgcctgt gagccgtggt
      181 tttaaattgg ctaatgcaga atacttgccg agctaataat aattcagatt actcctgtca
      241 gctattccgg tttcatgggt aatttagtag ttgaataaat ttttaaaaaa gccaatggct
      301 tgccgcgcgc cgttatgaat caggagatgg tttcccattg gcagcggtaa ctgtaagaag
      361 atttaaattg ctcctgaaaa ggatttgagt gaaggtaatg ttttataatg ttctaagcca
      421 tatgcactac tttcaggcct catcagtttt acattgattc ctagtgaagt gtttaattgc
      481 atcatgaatg caatataatt cagttctttt tgctaatatg gtatatatct caaagtgatg
      541 tacagcgctg acacggaaga ctccggagtg ttttaggatt tggaaggaag agtccgtggg
      601 tgctgcggag cgcggcggta cgcgggtggg gagttgtggg ggtaggctct gggtgtttgg
      661 gtgtctttgt tggggtggtt ggaaaagggt ttcggcgggg aggggattta tagttatata
      721 ataaata
//
LOCUS       KCLA01001373             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22324upu ultra-conserved element locus uce-968,
            sequence.
ACCESSION   KCLA01001373
VERSION     KCLA01001373.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22324upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-968"
BASE COUNT          205 a          133 c          162 g          180 t
ORIGIN      
        1 atagatgctc tgttcagatt ttgcagtagg agatgctgca tgtcctcttg ctccccaagg
       61 cacaaagtga gtagctctcc ttgctcagct tcgctgtgaa gaaactttct cctccagagg
      121 gaccgcagct tcttggaaag ggtagccatt tatcacagcc ctaaatgaaa gcattccttg
      181 gacacaaatg tctttttctt cctttgtcta attactgagg ggaaaagtga gaaggaaatg
      241 tcaaaacagt gaaacagtgg tgtatagaga gcagtcactt tggagctcaa ccagcttttg
      301 tgaaggcctg ggcgatttgt caaatagctg tggcataagt caagccctga ggttgaaagg
      361 tcttgaccta aggagtgctg aaatcaggca gtataagcaa gagggctgct agaagtttcg
      421 gctgtagtgg agatgaacaa tgatgggtgc tggacacaac aaaacctcat ctacataatt
      481 caggtaagga attttattga atctgacaag tatgtgacag gctgagaaag agaaaagaac
      541 atgctcttgc tgggaacctt taaagctctt cagttaaggt atgtggaaat aaatgacagc
      601 taatctcttc actaaaaaaa ctgtaaacaa tgccatttta cacagggctc acccgtgacc
      661 ttttcataga tcaggctatc
//
LOCUS       KCLA01001374             996 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22340upu ultra-conserved element locus uce-5300,
            sequence.
ACCESSION   KCLA01001374
VERSION     KCLA01001374.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22340upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>996
                     /note="ultra-conserved element locus uce-5300"
BASE COUNT          263 a          170 c          256 g          307 t
ORIGIN      
        1 tgtggaatcg taatcctaaa cattacaaat gcagctacca gtgcatcagt gggaaacacg
       61 gtgatagatt tcagtgtggt gtaagattca atgcttttct gttgtttagg agtccttgtg
      121 catggctgct tattatagat ttattctttt aaagcaggga ctgtgttgac cgctttctgt
      181 tgtattgtca tacttgagaa ggctcacctc tttcggcgga gtggcaagaa atagtgctgt
      241 gagaagtgtg cttctgcagt ttttttcagt tcatgaatct caaatcccac aagcttctta
      301 tgactaaaga gaagggtgtt aaaatcctgt aacttagtgt ctgctgagca gctgcagttc
      361 tgtgttacac tttttccttg tctatggcta tataatttga tggcatttcc ttgtttctct
      421 ttcattaaaa ggcagatcgg gagcggcgca gagaaatttc cttactagat gacatttcat
      481 cgcaatgtcc gatcgtttgg ggcaaataac caagggaaag gatgggaaaa gcaagtactc
      541 aactctcagc ctgtttgata agtataaagg aaagtcaata gaagcaatca gaactacagg
      601 taagtgatgc cttcagaaag ctccttctgg tgtttttcaa aagtgttgtt gcaaagccag
      661 ttcaggatgt ttgccctgta ggtaggatgc cctgtgggaa gcagctgcac tgcagggatg
      721 tttatgctag tgtctaagac agtgtttcat tagaaaacat cagtgctgtt cttgtgctgc
      781 tgttactgta gagatgcgga ggaattacag aaaacagctg ggaactgtgt cctggctgcg
      841 atggggtcaa gttgtaaagt tgagtgaaag ccttgcaggg ctttaagtta tcccaggact
      901 aggtgattaa gctgactgaa gtgccttaag ttgttcagag cttgtgtgag gtaagaggca
      961 agggctgaat gcctctgaga aagatgaact agtttt
//
LOCUS       KCLA01001375             890 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22356upu ultra-conserved element locus uce-527,
            sequence.
ACCESSION   KCLA01001375
VERSION     KCLA01001375.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22356upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>890
                     /note="ultra-conserved element locus uce-527"
BASE COUNT          256 a          145 c          153 g          336 t
ORIGIN      
        1 aatggaaaac agattttcag attctttata tcagtaatct tttagaggta aaaatcgcat
       61 tgatgtacaa tggtacaatt aaactgaaat tctgtggcta cctttgcact gtagttctgt
      121 gtattttttt tttttgttta attttatggt tttatgaaaa tttgcattca tacattcaca
      181 tttttgctct tctcattctt tgcataccaa aacagttatt tattacagtt gttcattttt
      241 tatgtagtat atttttaaat gttaaagaat gacacatttt gggtaatttt cctcagtctt
      301 aaaaaaaaat caataagcca ttttagtctc tatctatcaa agttgtttca tacttgtcta
      361 ttttaaagca ggactgcaat actttaatag gattgagaga gctatttgaa atgtatgcca
      421 atgattcctg tcatttcatg gcagccctgc catggttcac tgagccccct cttttctctt
      481 gtcagctcaa ctgaagacaa gcatttagtt gcaaagttta agcaggttgt gcaaaacaga
      541 aatgatgtga ctgcttctct tcctgcacaa taatgtcact gttggtcaat gtgagaaggt
      601 caggttgctt cttgtaaagc tacatgatac cacttgccta tttgaacaag ttaagttaac
      661 tgctgaatct ggtccctgca ggcgctggaa actcaccctt ttatcaagtc tacatttcat
      721 aagaaagatg aacaattgtt tagggaggat ttctgattat atgtttatgt actttataag
      781 gacagttccc aaaccagtgt tgcaggtaat atatttagtt taagctgaaa gactttaaag
      841 taatggctgt tttgaccttc aaatagactc cttttttgtt gttgttggta
//
LOCUS       KCLA01001376             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22372upu ultra-conserved element locus uce-5829,
            sequence.
ACCESSION   KCLA01001376
VERSION     KCLA01001376.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22372upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-5829"
BASE COUNT          188 a           93 c          117 g          162 t
ORIGIN      
        1 ttttttcaat ttgttaagat gctaaaatct gctttgtgtg atttatgaag gaacttgaag
       61 cgattagttt cacagtgcat gaaaattcct caggttcaga gggatgtcca atctgctaca
      121 ccaggagctg ttgactggat gagaacatga gcagctcgga gccataagga gattgtgttg
      181 agttattaaa cacttgtggc aaagccgctt attgttaatt ccccaatgtc ctgctgaagc
      241 gatcggataa gatcagatcg gattagatca aagaccctgg gaaccagcct ttcgagcaga
      301 ttcatttaat caataaagag ggcctccaaa gagagagaga agcagtacga ggatcatgaa
      361 agattagagc atggaaaata agaaacaaca gattattttc ccttattttt caaatgtaat
      421 tctgtaagcc aaagcatgac tttgtgtatg tgtgtgttca aattcttgta accaaaccag
      481 caaaaaagga taaaatgttc ccttaaaact tcattataat cagacagttt agaagcaagt
      541 attttttaat acagtaatac
//
LOCUS       KCLA01001377             930 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22387upu ultra-conserved element locus uce-6617,
            sequence.
ACCESSION   KCLA01001377
VERSION     KCLA01001377.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22387upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>930
                     /note="ultra-conserved element locus uce-6617"
BASE COUNT          279 a          179 c          161 g          311 t
ORIGIN      
        1 taggaaatac catgcattct agaactgcag ctttaacatg atacaaattt gaccttatag
       61 agcaacctgg ataatatgtg gtttatggct ttcagatgtt cttgttgcag catcaaggcc
      121 cataaatatt tagagcaggg actctgtggc ccatttatgc ccattttatg tagtattgtt
      181 tttatttctt gaagttttct atttcatgtg tgacagctgc attttagttt tcaaataggt
      241 ttttttatta cagagcttct tgtaacacag aaacatcgag gtgacatgaa gatgaattct
      301 attataacac gcacaaactg gaagatatca acaaagatta gctgcagaaa aataaagaaa
      361 taatctatga cagagttgag aatgattccc agaattttaa atacttgtta aaggctttgc
      421 tgtatttcac ttcaataaac atcatgctcc agttactact tgaaaccata ggggcattat
      481 cctgtgcagc acttatcaat attttaacat gtgaaagtca aatgatgttg aaacattgaa
      541 ctatatttcc atctgtgcaa gctaaaatgg tacaaatgca tcccatgtaa tggaatacta
      601 catccccagt tactttctta caagtgatac ctgattcctc tgcattttct gcagttgttt
      661 ccattgcttt caaggcaccc aaaggaaggc tgtgttttaa aattatactt ttaattacaa
      721 aacgtcaata ttaatgttaa caactacatg tgacttgggt gtgacccaag tgtgaacctg
      781 cgagacccaa atgacaactt ggggtgtcac tccagctaga tgttctttta ccagcaaccc
      841 ctcatggatt tgtaggtttg gtaaccatct ggtcactacc ttcctcttct tcgctcacat
      901 catgccactt gtttttatgc aaccttggtt
//
LOCUS       KCLA01001378             179 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22416upu ultra-conserved element locus uce-4421,
            sequence.
ACCESSION   KCLA01001378
VERSION     KCLA01001378.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 179)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 179)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..179
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>179
                     /note="ultra-conserved element locus uce-4421"
BASE COUNT           58 a           36 c           29 g           56 t
ORIGIN      
        1 aatcaaaccc gctggcatag gaccatattt cttgtcacca agaggcttaa agcaaagaag
       61 ctatgcctaa ttctcttaaa ccttacaggt caaaaggttt ttaaattatt tttgacacca
      121 tttctttgct ttgtcaatgg gcctgagtac tttttaacac gtaaaggata tcaaaaagc
//
LOCUS       KCLA01001379             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22432upu ultra-conserved element locus uce-4575,
            sequence.
ACCESSION   KCLA01001379
VERSION     KCLA01001379.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-4575"
BASE COUNT          189 a          145 c          142 g          160 t
ORIGIN      
        1 agagatgcgt tgctttcctg taactgtagc tgtctcagtc ttagagcctt ttcctggtga
       61 caaggcagga tttagcaggt agcatgagat accagtgatc ttaacgcaga gtaattgcac
      121 acagtggatt ttcactgttg ccctccaaac atgctgaagc cttcattctt tccccagcag
      181 gagccacact cagaagaggg agcatccccc agtgttgcat taccagtgcc aggcccccac
      241 caagggacct cagtctttat ttatcccaca cactctcttt cactctctca gatggtaatg
      301 agtggtttgc actgggaact aaatgaagtt gattgcccac tggtgtctgt cattagtggt
      361 aattagttaa aacatcagag tataaacagt aaattggctc taataattaa tactagcact
      421 caagcatatg agagacacag agactgggag agaagcaaca gcaagcttgt aaaatcaact
      481 ggggctgctt taattaaaaa agaaggaatg caagtaacat gctattggaa aaaggacaaa
      541 agccatcagg atctcgctca ttaggagtat ggttgtgtct cctccagagc acagcagggc
      601 caaaggctta tctcaagtac ccaccactgc acagtg
//
LOCUS       KCLA01001380             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22448upu ultra-conserved element locus uce-3113,
            sequence.
ACCESSION   KCLA01001380
VERSION     KCLA01001380.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22448upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-3113"
BASE COUNT          180 a          124 c          118 g          167 t
ORIGIN      
        1 ggagggaggg agtgagtatt tttttccccc cttcttttac ctccagcaac tgctgcttta
       61 caacctgtag agataaggct gcctcgcatc agatgatcac agagataagt aatctctccc
      121 ctcggcccgt gctattgctg accatatgcg cttgaatctc cgagcgctaa gtctttcctg
      181 tgaatgaacg agaaaacact cgacaggtcg tgaataatcg ttttaatgag tgtgtaaaag
      241 cgtgcgacgg ggtgcacgga gctgtcgggt taaacaaaca acttgtaccc tgacgaaatc
      301 cgattgttaa agtgcaaagt ggtgtcagtc caatttccat cccaattcta aaaaccgcag
      361 atctaagtcg cgggagtcca attttcccca ttaagaaaaa taacaatatt ttctgaccgt
      421 aagtgcgatc gtccctaatg ttagcccatg gggaaaaaaa ggaccagttg cacatctcaa
      481 aggtagcaaa gtttttctat taaaaaaata aaaataaaat agtttaaaaa tatttatttg
      541 acattttcct agatattatc agatcagtgc agtaaatatt ttccctttt
//
LOCUS       KCLA01001381             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22463upu ultra-conserved element locus uce-2816,
            sequence.
ACCESSION   KCLA01001381
VERSION     KCLA01001381.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-2816"
BASE COUNT          260 a          174 c          185 g          245 t
ORIGIN      
        1 aagaacttta agctgggaaa tggattctag gtctgtattt ctggctcaag cccagctgtc
       61 tacatttgaa aaagtatttg attttggaac acactttatt ggaatggaat gtcaaggaaa
      121 tacataaaca agcgggcatc acagataacg agctacaaaa acctgtttgt caccctcctc
      181 ccacaatggc aaagagcctt ctacagctgc taattagaaa attagaacac cacaaatgga
      241 ttatatttta ctggcagcat agcatcttcc ccccagtgtt ttaaagtact tttcaaattg
      301 tttgctgtca gcaaaacaag cgcactacct gcgatcctgt agacaacaaa gcccggcagc
      361 aggatttcag tcaggtgatg tcacccaggt aaaattgtac tgacaagctt ttaattaaag
      421 ttttcccaca catctttctg ctggccccag gagctattat tcattatgtg ccgactgtca
      481 gccaattgtg agtcaggagg gaagtgtttt attttcaaag cccttgctga cagctagaga
      541 acactttgtt atacaatctg tttacttttt tcacacaaac agtcttgcta aagggggaat
      601 ggtcatgcag taatgtttac agtttatggt aataatgaaa tgcatctggc agagcagtag
      661 ctgaaagaag gttggtgtgg gtgtgggtga aaagccataa aattcctcct ataaacagtt
      721 actctcacct tgcagagccc ctagcgtctt aagacagagt ttctttggga aagggcaggt
      781 ctgaacaggt gcacagattc tgaaatggga atatttggat ctagccatgt gctacttgat
      841 gctaagaaac actgttcagg aatc
//
LOCUS       KCLA01001382             811 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22477upu ultra-conserved element locus uce-3469,
            sequence.
ACCESSION   KCLA01001382
VERSION     KCLA01001382.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 811)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..811
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>811
                     /note="ultra-conserved element locus uce-3469"
BASE COUNT          269 a          144 c          133 g          265 t
ORIGIN      
        1 ttttagcaag tatgaagcct tctgcttagt tcacaaccat ttgaaaataa aagaaaaata
       61 gaaatgggac tgaaacattt taattgcatt gtatgtcatg ttaacttgct gtgtataaaa
      121 tagcaaagca gataatattt cagtggagat gtctataaaa cactgagctt cttggtataa
      181 tttttaaagt tactagccta tgcctgctga aataaaatct ccaagtaata acaggtaaga
      241 tatctggcct catgtacatt ttcaaagtca cttactaatg gatagtaaat tgaaagttat
      301 atcttcagcc ctttataaag gaagcacctc actaatactg taatcattct gcaaggctaa
      361 caacagagga aatcatgcca taacaaatac tctgttacta atggcaacat tgatttctgc
      421 aatcagccat taagtctaga aaatgaaaga cagtttgagg taccttaagg cattacattg
      481 cccactgtta aagacctggt agcaggttgg tgagggtaat tctttttaag ttttcccccc
      541 cagtttcgat aaatatttta gtattggagg caattcactg ttatagttat taagtatacg
      601 ccggtttatt tttgttgttc ttgtcatgct ccactatact ctacttctga ggccaaatta
      661 atataaaaat aaagtcttag tttgctgcct tattacaacc agtaaagaaa ttgttaagac
      721 acataaatct gcactccaca ttccacggat tcctatagta cttaatgctg ttgtttaaat
      781 acccatgaaa cacactgtct gctcttagag t
//
LOCUS       KCLA01001383             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22492upu ultra-conserved element locus uce-2235,
            sequence.
ACCESSION   KCLA01001383
VERSION     KCLA01001383.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-2235"
BASE COUNT          246 a          132 c          137 g          239 t
ORIGIN      
        1 actgactagt tgtgtatgtc tgctagttta catttttgtt gcccatctaa ccttgccaca
       61 cagagagtat tggttagcca cataatggaa agcatgtaaa atgtgttttc agtagaatat
      121 agcccttgtg ggtaaataat ttcattctcc tttcccaagt actgttagaa acaatatcca
      181 gcatcaaccg attgcataga tagcctgatt gtaaagcaaa actaatatga aaaggcaaga
      241 agtctgcaat aaaacctact aacttaaatc atgcacattt gtgtacaagc attcatattt
      301 agcaacagtc ccaaggctga gattaaagct gtttggtagg ttacttcaag gcctttttat
      361 tgctaaatct tattatgtct ctaaaatgta gaaattaatc acctgtcatc aaagctacag
      421 tggattattg acttctaaat gtctctacaa agtgattcat gacagaatga aacaggagac
      481 tgaactagca ctgaaattct ttttgcaagt gataaaaggg gtctattaaa agtgtttgaa
      541 caaatgctgg ctattaggca atcatcacaa aggatttcgt tatcaaaacg tggtgcttct
      601 tgaataacct tattcagtta catagatttg taacacaaat cctctaatgg tggcgttatc
      661 tggagaattt agattgttca tctgcaaaac ctacattagg taaattgcag caggtttttc
      721 tgaactacct gcaagccagt gatgctgaaa tgtt
//
LOCUS       KCLA01001384            1002 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22506upu ultra-conserved element locus uce-4302,
            sequence.
ACCESSION   KCLA01001384
VERSION     KCLA01001384.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22506upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1002
                     /note="ultra-conserved element locus uce-4302"
BASE COUNT          315 a          187 c          177 g          323 t
ORIGIN      
        1 aatgattctg tacagtgtat cactattctg atcagatatt ttattagtag cagtatactt
       61 cttaaagcta gaatttagtt tgcctccttt acattgtaga aatcctgctg ctgtagcaat
      121 ggataactgt aaagctgtgt gccttaaact cccccttctg agagaaaaag aaagggagaa
      181 agaccatagt aattttcaac catctgtgtt aaaatatgaa gaaaacagga atcattcaaa
      241 aataatgtgc tggacagcct gattaatgct tacatttgca ttagtattga taacaatgca
      301 ccttatgctt tgttatctac tttcagcatc cttaaacatt ctgtaattca agtcagtagc
      361 ccttagcttg tatccttccc tgtacataaa gcttcaaaat gccttggaag ggctccagtt
      421 cactcatgct taaatcaaca ttaaagcttc aatggacaca cagctaaata ggggccaata
      481 actgaagcgg tatgagcata ctggggctgc tagtaagtcc atcaagcagt aaatatcatc
      541 tgacgccaat gcaagctttt ctcttttctt ttctgtgtat gtctgtgtga ggcccaggca
      601 ttcagtgaat catgtaatgt attctgaagt acagagcctg ggctgtctta gacaccatat
      661 tgactgcttt ccttctgtca ggagtagtca ctgttccact tctgtgaaaa gagatcacat
      721 catattattt atttatttaa tatcattcca tggtacaata gggcaaggac atttttttgc
      781 agaacaacaa aaatgaataa aagcatctga gtaccattac aaagtttgtt aagtatttgt
      841 cctaaatcgt ttctgattta atcaaatgca atttcaaaaa attcttgtag tggctcagag
      901 aagacaactc actgcaatgt tttatgaagc cttctattat tttgttttgc tctttagaac
      961 atcagagatg ccaatacaaa gaataccaaa ctgatgggta ga
//
LOCUS       KCLA01001385            1129 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22536upu ultra-conserved element locus uce-5193,
            sequence.
ACCESSION   KCLA01001385
VERSION     KCLA01001385.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1129)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1129)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1129
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22536upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1129
                     /note="ultra-conserved element locus uce-5193"
BASE COUNT          270 a          261 c          362 g          236 t
ORIGIN      
        1 gagaaagtcc ccatccagag ctgctgtctg gagtgaggga atgggacctg aaaaccttgc
       61 atgctccttc gtgtttaatg actaggtgtc cccaccagca catttcatgc agtctgatac
      121 agtgggtgca gtgtgtcact gcctggttgc tgatggaggg gatgagataa cttagctggg
      181 tccagggtta agccccaaac agaggaaaat cccggctgtt tccgaacaaa ccttgtctca
      241 acacaagaga cgaccatctg acaagtcagt ctaggtggca gtgctgtcac tgcccagccc
      301 tcctcacttg ttctggctct gctttcaaaa aagaggaata aatgtgcagc aatgggtagg
      361 agatggtgtg gtcccgcggg gaagcagagc cccatcctct cacacagcta gcagtgagag
      421 gagcaggaga gtggagggta gcacagcgct gtacagctgc agggctgctc acaacagggc
      481 agagctccca gagaatgtgc tctttgttcc ctgcctttaa agggtaagag aaacacttat
      541 gcatggcaaa ttagcccaaa aatgtatttc tctaaaacac ccgattgtct ggccagctct
      601 gcagctgcag ggaagttcca gggagagagg ggggaggtgg agggaaggag aaggagggag
      661 gcagggaagg agttttgatg gctggcgggg gaaagcaaga taattgtgca aataagggag
      721 aaattctcat gcccccattc agacagggct gaccagtgag tgagtggacc cctgatggag
      781 gggccacgtt ggtggccagg ggactgtgga cactgtgcag tcttgggggg gcagggaaaa
      841 gaagggacag gagacagctg tgctgcggac agtgagggag caggcactgg tgcagccggc
      901 ggtgctgggg agtcctgctg cctggcaggt tcagctgtac catctggacc aggatgctcg
      961 gcaagcagtg ccatgctcct ctagtcgctg tgttgcgcat cccaggggtg atgggctcga
     1021 actcctctcc tgctttggac caaatctgag caggtgcagg gcctgtgctg ttcccaagtg
     1081 gtgccacttg gctttaaaac gtctcagctg tacctcttga taacgaact
//
LOCUS       KCLA01001386             725 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22552upu ultra-conserved element locus uce-5730,
            sequence.
ACCESSION   KCLA01001386
VERSION     KCLA01001386.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 725)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..725
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22552upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>725
                     /note="ultra-conserved element locus uce-5730"
BASE COUNT          213 a          158 c          145 g          209 t
ORIGIN      
        1 aataacaaga cagtcttagg tgtgacagtt ttagctcctg gcacactaag ctcttgtttg
       61 atatgctatg ttcatttcat atttgtgtaa tatcctgcag aaattaggtt ggaataaagt
      121 gcatttttgt cactgcatgt agcaatgaat atcacaccca gcagggtaca gtggcacctg
      181 gctgtccaga cccagtgtag cacaaagcca tctgggggta attacaacaa ggtattcttt
      241 aaggaccaga tgggaccaag gaacagaagc cccaacccct cccagtcatt tacaacataa
      301 ttcctttcaa tgatatactt aattctccca ccagctacgc ttttcagctt gctgttgtca
      361 ctgttccttt atgttaattc agttgagaga cacagaaaaa gagagagagc ggagagcaag
      421 tcactggtgc ctcaagggac taaaagaaat tattcatcct taaattgttt ccactacacc
      481 aagtacagta acaatttttt tttttaaaga cggctgaaat tatcctaaag aaggtcaatg
      541 ctgtagccct gtgcaacacc agctgagttt tattcagcca cctgttagat gggagggttc
      601 tgcacacgct catgatgcat taaaccagtt taaagggtct ttttattgac tggcagcctc
      661 cctacattca aagtgctcaa gacatggccc tgctttgtga tcatatgtgg cacacaagac
      721 ttaat
//
LOCUS       KCLA01001387             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22567upu ultra-conserved element locus uce-7774,
            sequence.
ACCESSION   KCLA01001387
VERSION     KCLA01001387.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22567upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-7774"
BASE COUNT          110 a          118 c           89 g          142 t
ORIGIN      
        1 aaatcttgca ttcctccccc gcaaatcccc caactcataa aacatatcag ctgggtttat
       61 tacttttaac catccttcca attgtgctat aaaataaagg cagatgccgt tttaagatct
      121 tattattatc aagggccgac tcctccagca gcacctgctt agcggcaatc tgcttgttta
      181 tagtcctttt ttataggtga cagtttaagg tggctgctct cccgctacaa agacttcttt
      241 cccgcggcag aagcggcgca cgcggtaggt gagctccttc tttccctccc gtgttattga
      301 gaaggggtcg ccggttcacc tgtgattttt gcttgacagc ttcgccgcgc acatcaggct
      361 ctgccaaatg ctccgccatt aatttatgat ttaaagtaat taacttttgc tgattaaagt
      421 aattatttca agtgcattgc actcaggccc aaatgatgc
//
LOCUS       KCLA01001388             417 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22581upu ultra-conserved element locus uce-1675,
            sequence.
ACCESSION   KCLA01001388
VERSION     KCLA01001388.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 417)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..417
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22581upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>417
                     /note="ultra-conserved element locus uce-1675"
BASE COUNT          126 a           73 c           86 g          132 t
ORIGIN      
        1 taaaacttta atttatgaaa aaaatgctag cgcggtcccc gaatggttaa attccgctcc
       61 aacttttcat ttgagttagt catgaatata tctaacgtac agaggccatc agcatcccgc
      121 cactagagac tataaagtct acttacatag ggttcctggg atttttcatg ttcttatgga
      181 aaatatctct gaaatccccg agctgaaaat tttgatctca tttgtggatg tgagtgatgc
      241 tgagaaaggg ttgaagagtg aagagaacac ttttctcgca taatttcatt tgtcaggaga
      301 atcttgccgc tgacattgga agagtgattt aattgatttt aatcatacac ctgagattgg
      361 gaaattgagc cctctgtcct gaaaaataat tctaggcttg caggagaatg tctaatt
//
LOCUS       KCLA01001389             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22597upu ultra-conserved element locus uce-291,
            sequence.
ACCESSION   KCLA01001389
VERSION     KCLA01001389.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22597upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-291"
BASE COUNT          239 a          171 c          194 g          268 t
ORIGIN      
        1 gagatgtttg tttgttgtaa gcaaggctaa aattatcttg gctccttctg acgggataga
       61 aaagctggtg tcaattgggc cagggactgg atgaggcggt aggaggtcca agcacatgat
      121 ggagtctcct ttaatgattt gttcaccgtg gcagggagca acggccttgt tgcatgccct
      181 gtcgaggaga catcccaacc gagccagagc cgaaactcca cacaactcta agcctgatgg
      241 agacacataa tgaaatacaa tcctgtcaag cttggcccct gggtaacatt ttcacttcta
      301 cattccattt tcagtttagg tcgagatttt taagaagaca gcaagcagca ctccagtccc
      361 aggtgacaag atccgctcag atttagtctt tgaatgttgc aaattaaatt ccctcatcag
      421 gcctctaatc attcttacca gatggggctt gtgctcaatt ttggatccac aggaaattta
      481 atggttattg tttctgttta aataggagat tattgcattt taataagttc tctttgggac
      541 ttgcagcaac aatagagcac tatgaattac tgtagatagc tgttactgca tgctggggaa
      601 aaatcaagtt actaagtgtg acaagttgct ttttcttccc ttccagcaat cgctcggagt
      661 gtatttacca ccaaattaag tatgtgccgt ggggataata tttttatcct gccgaggggg
      721 gaaggcgctt gtctgtggat tttcattaaa atgacacatc tgttcagcaa tttcacaaag
      781 taattctgct gaaagtttta tcagctaatt ttaattattc actccagtgg gttgaataca
      841 ggattcatca tgttgaatta atacatttga cg
//
LOCUS       KCLA01001390             713 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22613upu ultra-conserved element locus uce-7249,
            sequence.
ACCESSION   KCLA01001390
VERSION     KCLA01001390.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 713)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..713
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22613upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>713
                     /note="ultra-conserved element locus uce-7249"
BASE COUNT          215 a          169 c          128 g          201 t
ORIGIN      
        1 acagagaaat catttctcag gtaactcagt gtttatagaa gctatttaga aaatgctcca
       61 tcagtcccag gttgatgtct catctaattg acctctccag tgacatcttc cacagcacag
      121 gctggcccgt gctctattca tttatttcca tcttacctaa aattatgatg aatggtctga
      181 gctccattca attattgaaa aagcgcaaag aaccagaaac aatgaacctg gcaaagtgct
      241 ccgcattctt aggaacaatt ttggctaatt agcatcaact tctcccccat tcatcatacc
      301 cctttagaaa tataaacaaa ctgtcagctc taacctaaca aacagatcac tgagctactt
      361 aacacaaatt attcttacat gaaaagctcc ttctcaggca atattctcct ctagggcatc
      421 tgggaagctg agctattaaa attgaagaca tatgtttcag tcaaacttaa ctcccagatt
      481 gcagtgattg ctgttgtgac agttttccat cagcacgctg ctgctgccaa cgggctgcgg
      541 ggttaaacga agcgacgcaa cgatagacgt caatgatgca tgttcatgta ctacagtacc
      601 gataccaccc aattagcaac ctacacctac gaggggagtt attccaatta ttgcttaggt
      661 acagctccaa tctcagattt catctagggg gttgttttga gtgacaagtt cag
//
LOCUS       KCLA01001391             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22629upu ultra-conserved element locus uce-1520,
            sequence.
ACCESSION   KCLA01001391
VERSION     KCLA01001391.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22629upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-1520"
BASE COUNT          236 a          107 c          144 g          218 t
ORIGIN      
        1 agtctagaat cctttcagtg gattgagagt gtatgcacac aggatcagtt gatgtagtgg
       61 tgatttcata cacgttgtat cagtgttttg tttcagtgaa gaaaaaaatt aaaataaatt
      121 ttcattaaaa gggcacaaat tattgataaa tgcatccatg tttgtagatt ggttatttct
      181 cagaggttat ttggggtcat aattgtaaat ctcattacct tgcttgaagg aggtctcttg
      241 cattattaca gtgatgaggt ccatatccct gaagctaatt gcaagatatt gcttgagagt
      301 tctaattgtt tgccatcaaa atagctgtga aagcttgatt aacagtgttc agcaacattc
      361 ataatagtcc aagcctggtt ctgcataaaa tagaaactgg gaaaaaatca ataagattta
      421 ataagatcag gaacaatcac ttacaatagt acatcaatca cacaaagtaa taggtgcagg
      481 atttgatagg gtcctgaact gcctgagaga ttcataacca gtactcgtta atgatttgtt
      541 catttgcatt ttatcaatcc agctacagct gacaagcaga aggagcagtg aggaaatatg
      601 ttgtcttaaa ctcatcagag tttgcaatta aaaatataac agataatggg aaaaccaggc
      661 gcggctctat atgtggagtg tgcatgtaca tacatctgta gacat
//
LOCUS       KCLA01001392            1092 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22645upu ultra-conserved element locus uce-1410,
            sequence.
ACCESSION   KCLA01001392
VERSION     KCLA01001392.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22645upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1092
                     /note="ultra-conserved element locus uce-1410"
BASE COUNT          317 a          257 c          225 g          293 t
ORIGIN      
        1 ggggattgga catgagcttt caaggtccct tcctatcctt aatgattcta tgatattgga
       61 ggtttacccc tgcctggctt attggttttg taagaaggtt tttccagggg tggctccagc
      121 tgcaataagc tgaagcacag atacggacca atatcctctc aaaagcagag cggctacagt
      181 aacatcacat taactcaggt ctccttagga attgctccct tcgaaaacac tgacctgaat
      241 ttaaacaccc tgtgtttgtg cataaagaag ttacagctca taaaggaaca tctgacttta
      301 taaacctgct caaagccttt tactgaagag ggaattcttt gtttccatga aattgatata
      361 tttaatgaat atattcctgt tataatatga catctcattt ttctctctca taaatacttg
      421 tcaggtttat gatttctcac tcattggccg ggaattgtgt tgcacaagct cagattgtgg
      481 gtgctcatac caagtttaat ttcactcaca agtagagttg acaaaagatc acagccacta
      541 agccctggaa ttaccctaga tattgccctc tgtgctctgc aaatgaaatc ctacagaaga
      601 ccctttggaa aagaagaaca tgatggttaa cactcagaaa tccattttgc acagggcagc
      661 gtcagtacac agagcagccc tgaatgacag gcagagctgc cactttctgg atgagaaaag
      721 tcagatgctc agcattgcac cctggctggc tgtccatctc acgctgctcc tctcccactt
      781 tctcttgctt ctttctcatg cccttggttg actaccaggt cagattgaaa attaagacca
      841 gtgaaatcag aaccagaccg cacctgtccc cagcagggcc agaagagaac tgaaataaag
      901 cacttacgaa actgctgtga ttgtaacctt caaaacactg agctccccca gatgtctgct
      961 ctcctggacc agggcactgc aacagggcaa gaaggcccag caaactgttt ctaatgaaac
     1021 actgtggctt tgggaaaggc taaagcagtc tgcagagcga ggaactgggt ttagcaacaa
     1081 agcttctaaa aa
//
LOCUS       KCLA01001393             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22659upu ultra-conserved element locus uce-7503,
            sequence.
ACCESSION   KCLA01001393
VERSION     KCLA01001393.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22659upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-7503"
BASE COUNT          218 a          146 c          116 g          228 t
ORIGIN      
        1 tattttaaat agctccacaa attgaaggaa gcatttcagg aaggcagcta taacgtttct
       61 ctattcttgc ttcaagcaca taaatgttat ttcctctgca atgtcacata ttgaccatct
      121 gaaacttgat aaatcagaag atagattgca gtgaagctct atgtatttaa gtatcaagct
      181 gatccataac tttcacacca accaaaagcc atttcttgtc aatgctgtcc agaatatatc
      241 ctgacagttc agtgggagtt tcagtgccat ttattttcag atcaatactc aattactaag
      301 aggaagattc actcccttgc ccattttcaa gatgaaatta tggactggag caataacact
      361 tagtcaaggc aagccactgt ccattaactc ttgatgctcc caaaaccaca tccagacact
      421 ttattaaagc tcagtctttt ttcagctttt aattaatcat tgtgaaaaag gcctttcaca
      481 tagtgactga tgaccagaga aaacaatttt ctcctaactg ccttttaatt tcaactctgg
      541 gagtgctcat tgactgaatc tctcaacaac ccatcaatgc taggttttaa tgtgttttct
      601 cctttgttat tgagaagaat ggagtggcaa tgaggctttg tgctcctctt cataactcaa
      661 gtaattgatt cagtaaatgc tgcacatttg ctagtggata aaaagtgc
//
LOCUS       KCLA01001394             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22675upu ultra-conserved element locus uce-3129,
            sequence.
ACCESSION   KCLA01001394
VERSION     KCLA01001394.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22675upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-3129"
BASE COUNT          155 a          106 c          118 g          141 t
ORIGIN      
        1 aagtgatcct ttaagtgtcc ccatttgacc aactttgaga ggcagcagct tcctgagaga
       61 gttgaagcaa tgtttgccaa tccttgtaaa gcatttcacc tcttcagagg ctaaagcctc
      121 tcaaaaccaa gaacaattaa agcgagagcc tttcagggcg actggggaat tcagcaaaat
      181 aaatcagaaa tcctctgcct tggctctgga ggcttgcctc attataagag cagatctatt
      241 agcccccttg ccattgtctt tcatttctca agtgaggtga ttctaattaa attaatctgc
      301 atgtcaatct atcggtgatc aatcaaaagg gctgaggtcc ccctttgcgg cagtgtgctc
      361 gcggctgaca gaggctgata atggaggaag aaataaactg tcgagcaaag ttaattagtc
      421 aacataatag gtggattaaa caggagctgc tgattgctgt ttcacatgtc gaagcatgag
      481 gtgggagctg aaactgcaat taacagacaa ttattatatt
//
LOCUS       KCLA01001395             889 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22689upu ultra-conserved element locus uce-5694,
            sequence.
ACCESSION   KCLA01001395
VERSION     KCLA01001395.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 889)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 889)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..889
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22689upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>889
                     /note="ultra-conserved element locus uce-5694"
BASE COUNT          281 a          192 c          162 g          254 t
ORIGIN      
        1 ccctgctgtt tcctaccaaa taaggaatgt tcactgacaa gactcaaaaa atatattgca
       61 gtttagacct tacaaaacac tcagatctct gtgtttctcc tgtcctactc agaaccttct
      121 ccctccttca ctctgaaaaa tatgtgccag ccttgtctac cctgagcagt gcatccaagc
      181 ctatcctctt aaccactctg caaaactgtg cacctcagcc atactgcctt cagaggcaag
      241 taggaaataa atagataata aaaaaaaaac agagtccagg attctactga aatttgttcc
      301 ttttgaacac attgtgcagg tctcctgtat gatcttttgc agaataactg acaagaacaa
      361 atcccacaat tattaacctt tccacttgtt ctcatagttt attgtgacta gacaatgcaa
      421 taagcttgaa ggtaatcaaa aagcaatttt gtagtggtga gtttaaaatt acaaaccttt
      481 ccttttctaa ataaatcacc attattccca cacggtccac acttgacaaa tttgtttcct
      541 tagtaacaga gtacttaaac agggcttgtg tgtaaagatt atacctttag ccacagaagt
      601 gaaagaagag acagtaggag atgtggccca ccccctcagc cagtgattta aatatttatc
      661 agccagtaaa gagaggatgt gccaaaggct aggtatgcca gtttcctccc tgcattttgt
      721 gtaatcagag tagtctatgg actcagtagg gtttccagag tacagtgcct aagctgatgg
      781 taacacatgc tgatgtttgt tcaatagatc acctaacggg gaggtcagct gtctcagaaa
      841 ttatagagca gattaacagt gttaggacta cagtacaaat aaagggtgt
//
LOCUS       KCLA01001396             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22705upu ultra-conserved element locus uce-114,
            sequence.
ACCESSION   KCLA01001396
VERSION     KCLA01001396.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22705upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-114"
BASE COUNT          137 a           94 c           93 g          148 t
ORIGIN      
        1 tccaaaaact gtgagaatac tacagaatcc cattgcctgc actcgttcaa cgggagaaca
       61 ctgtatttgt aataaattcc ttttgctctg gatgagttct gcattttcaa tgaggttaac
      121 ttggcaacat tctagttgat tttaataaaa atagctcttt gaggacaggg agctgaggtt
      181 gccaaattta cagctgcctt gcacaattac tcttacacct ccttcagggc tacttagaac
      241 cagtaagcaa attaagtgta tcgattgcaa ttttgttgga ctaacctttt tttcttaagg
      301 aataaacttg attcctttca gtatgtgtct gctcagagtg atctcttttc ttttcagcca
      361 taacacaaag acaacatcat ggctggatcc acgacttgcg aaaaaggcta aacctccaga
      421 agagtgcaaa gaaaatggta ggttattaag ttttcgttgc tgctccgagg gg
//
LOCUS       KCLA01001397            1153 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22720upu ultra-conserved element locus uce-4843,
            sequence.
ACCESSION   KCLA01001397
VERSION     KCLA01001397.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22720upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1153
                     /note="ultra-conserved element locus uce-4843"
BASE COUNT          356 a          249 c          223 g          325 t
ORIGIN      
        1 agaaatccca tcaggcttta atttgctttg tttctttttt atgtactaga tccttaaaaa
       61 aacacaccaa aattcaacct aataaacaaa aggagaaaca ctaaagatga aaaaggaaca
      121 gctcacttaa gtgtatttca atgccaatat tttagtagct atgcaaagca tttttgtata
      181 ttcttcgatt gctccaaaaa tcaaaatact aggactcttg ttttgacaag tggtgcagca
      241 ctaacgctag aactcattcc aaaacacaga acctcattca atgaaatact tacagagctt
      301 tcagggaaaa tgtctaaaat tacacatcac ttcagaattt tcaaatctct acacagaggt
      361 gtgaaataca gactctctaa ataggctgtt taagaactat tgtgcacttc ccatttgaac
      421 tgggagttgc agcctctgtc tgcacagcaa cttgacaaat attagcttga actactaagg
      481 cagtatgaca accgcatgct gagagcaaag tctcactaat gtgttttggc atgcaggttt
      541 gtaatcacac atttacatat gcaatgacct acatttgcat gtcagatcac acactgtctt
      601 gctttattaa gaccaggcac cttcctgtgc ttggcggcca gagtggcgag agagggccag
      661 agggcggtgt tttttggcag ttgagggatg aactgccacc aaagattaga ctgatatggc
      721 ctgagcatta gacacttcat tagaggtaat ctgtttaaca gtgggcagtg tatgtaaact
      781 tcacagccca tttgcggcac cttttccccc ccatggcctt tcttcaaagg gcagcgtggc
      841 tgagtgacgg cttgtctcat ctgctctctt gtcctgtcat acaatttaga tgtggagagc
      901 tgacatgaga agcaacatag ctgcacatct tcaactacca ctgggtctcc ccccaccata
      961 atgcaatttg tagagaatac gcttgtgcag gataaagatt tgcttcggtc tgagaccatc
     1021 acagaacaga ttatatacac ttcactaatg atcacattac actgtattca ccgagtaaat
     1081 cagtgagtgc tcagaacatt attgttccca ggatggagac agctacctta taagattaca
     1141 ataaccgaga agt
//
LOCUS       KCLA01001398            1054 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22736upu ultra-conserved element locus uce-5077,
            sequence.
ACCESSION   KCLA01001398
VERSION     KCLA01001398.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22736upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1054
                     /note="ultra-conserved element locus uce-5077"
BASE COUNT          341 a          251 c          179 g          283 t
ORIGIN      
        1 ttttctctct atttgtcttt gtgaaggagg accctggaag taaccttttt tcccctcata
       61 ttatacattt gatacagtac aatgccaggt gaaaagagag ccttaataaa gcatgcatca
      121 cccatacccc tgtataagac cccctacaag agaaggtcac ttgcataagg caccattatt
      181 aaggtcaaca gtgcattaac agctagaaaa ccagaagtta gtcctcaagg cataaataag
      241 agaaaaatta gctgcatgag aaaaatcagt ttctaaccaa tagtggtttt atccacccaa
      301 cagaaaaaat tattcatgtt ccatacatta tgtaacatta caccaattgt attttagctg
      361 ctcttaactg gaatcaaaac tgcagtcctg attaaagaat ggaaaagcat atagttcccc
      421 agaaccatgc aataaccttt gtattataat gaaaagttat agttgtgtta catttgtaaa
      481 tacacagctt atacaatgga ttacaaatga gctctgtagc aagtaaaaca agctacttga
      541 cacattgcac gtttaatagc tgcaccagac acctaaagct cctctcacac aggaacgggg
      601 aggtctctac tctggcatcc tgactctttt tactccccat tttcccctct tcattttccc
      661 tctaaaaagg tgcagacatc cctcccccca ccccttggaa atgattggtg gttgtcccat
      721 ctcacaagat actcctcaca tacaagacat tcagactctt ttttctctta cagttataaa
      781 gcaaccacaa gaaaaaaaat gtgcctcagc atacagtcat caagagatcc tcatcgcata
      841 cagtcaccca atcattaaca ttctcagtgc acatgctcac ggcaaaggct taggagccac
      901 tcagaaggtt agataccagt gtatgagtcc aggaaacccc aaacatcatg cactgcggtt
      961 gctatgccgt ttcttacatg acttattagc cctcaaaaga ccttcaagga agtgaggtcc
     1021 tggaggcaac tgggtagggt gcaaaatggc atgc
//
LOCUS       KCLA01001399             281 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22752upu ultra-conserved element locus uce-3561,
            sequence.
ACCESSION   KCLA01001399
VERSION     KCLA01001399.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22752upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>281
                     /note="ultra-conserved element locus uce-3561"
BASE COUNT           71 a           60 c           72 g           78 t
ORIGIN      
        1 tttttccctt ttcatcttgg ctttctgttg cagaatgcaa atgtagcctg ccggcggtga
       61 atgggctgaa ttgtgattaa gaagaagaag agctcctttc tttgttctcc cctcagggga
      121 tgtttactgg gagagacaca gcggatcaga tatgaaaggc attcaggtca gcattgatgt
      181 gagcgaaagt gaaatcatac ctaaggcatt caaaagaccg ccgtgtcagg ggttcagcta
      241 acggtgcatc tactgtgtct tccctgttag gcacacacac a
//
LOCUS       KCLA01001400             975 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22767upu ultra-conserved element locus uce-7120,
            sequence.
ACCESSION   KCLA01001400
VERSION     KCLA01001400.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 975)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 975)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22767upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>975
                     /note="ultra-conserved element locus uce-7120"
BASE COUNT          274 a          251 c          252 g          198 t
ORIGIN      
        1 agaaaagctc cttggaataa cggagccctg ctgccgacag caggttctgg atggaaccca
       61 agaggaaagg gccggtgagg ttttatttgc ctcccacaga gcatcaggaa gagacctaga
      121 aagacacagc agcagcagga gaagggctct cctctcccct cctcccacga gcgcagccaa
      181 tggagccgag acaggaggtg aggctcgaca gcagtaactc tgccaacttg aaggaaacgt
      241 cagggtctgg agaatttcct cacgtgtttc caatgtggtt tttatgcatt ttattgctca
      301 tctgccatgc agatcaaaaa cgctggaggg attccaacta tttcacacag aatctcacac
      361 tccaggctgg ctgcagcccc aaagcctgag tttcttcact tgaaatactg cccagtgtta
      421 ttttgggatg tgacctgata gcggaagccc acggggaccc tgaaacgata actgttccag
      481 ctgcgattgg ttgcccaacc ctcgccgatg ccagcatggg tttgtcagta ctgctgacaa
      541 acaaggactc agcagctaac accttctttt cacaccacaa caaaaccatg cctggaatca
      601 cacaatctgg tacccaaaag agggggcagg ggagttcagc tatctcaggg aaagggctgc
      661 gagtcctggc atgaccaaag cgaggcagcc agttccttga tgctgggaag cttctcttac
      721 gtgcaaagag gagccaccat ttcactatct gataggagct catttgttaa aagatgaaac
      781 aacaagaaat acttcagatc aaggtaacac aaacccagag aagagatgga aggctctgct
      841 ctggcccatc ccactgatct ggaagagcag gaagactgac cagaaagcaa actgatctcc
      901 tcagtgggga tgtccctgcc catccccaag ctaagtgcat gtgcaagcat ggaggcagag
      961 ggaaggagtc gggct
//
LOCUS       KCLA01001401            1105 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22782upu ultra-conserved element locus uce-5994,
            sequence.
ACCESSION   KCLA01001401
VERSION     KCLA01001401.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1105)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1105)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1105
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22782upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1105
                     /note="ultra-conserved element locus uce-5994"
BASE COUNT          319 a          229 c          206 g          351 t
ORIGIN      
        1 agagattccc tctggatccc acaccaggtt gccaatgcta tagtctgatg cttcgtcaag
       61 caaaatgcgt gatttggaca caccggtgaa ctcacactag aatttcacag aactctacta
      121 aagaaaaggt agattgagat attttaacag tcatgttgtt agtcaaacct gactaacaga
      181 ttagtttcca ctgacatcat ttctttattc tatttacaag ctaaattgcc cagtcactca
      241 attgataaat gcctattttc ctccatctta attaactaaa tattctttta cttaaacaag
      301 ccctcatttt tccatagaca cagtaataga tccattagca gggtctatct gagaccaagg
      361 atcttttatt tatgaggaca agtccaaacg gttactattt tttactgttt ttattttcct
      421 cgacactgta caccgtgtag tggctttggg ccaaacagta atcacacaat gggtgccgtt
      481 ccttctttct tgacctatca cactccacat gatttaatcc attgttttgg atgttgctga
      541 tgatttattg tacgaaaaat gtaaatgatc tggatggcag atgttttata ttttctgacc
      601 attcattttc agtgggaatg taattaaaat ttatgaagtg tatctgctga attgcattgg
      661 caattgatga tctcctccag tgctgtctgt ctggagatga tgagtgattg tggacagtga
      721 gatgtgttga caagggcaga aacagacgtg atgttactgt catgagtgag gctacctgca
      781 aaaaggctgc caggtttttt tcttcctttt ttcccacagg aagaaggtgg caactagagc
      841 tgtctttctt cttgcaagac agagtacaaa gcctctgcac actcctgaaa gctgtcactc
      901 ttcacaagtg caatatctgt ctctctcagc aatgggcatc tggaagccct gatatcactt
      961 acaacaaccc atgtcaagga tattaattaa aatactgatg gccacccaga gaagctaatg
     1021 agtgtaaatt tcacaacatc ccaacttata aggtggcaca tttaaccttt tcagcattga
     1081 tatccttcct ccaggagaga aagga
//
LOCUS       KCLA01001402            1133 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22798upu ultra-conserved element locus uce-2851,
            sequence.
ACCESSION   KCLA01001402
VERSION     KCLA01001402.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1133)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1133)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1133
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22798upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1133
                     /note="ultra-conserved element locus uce-2851"
BASE COUNT          292 a          210 c          271 g          360 t
ORIGIN      
        1 agacatgact agttttgggg agttgctggg gtgtcctcct gtgctcctct ccaagagcag
       61 aacttgcact gtgttgtgat tgtcttttgc tgattccgtg ctgcagtcca ggctggtgct
      121 ggggatcagc tgtaggcaag ggtgggaggc aggggctctt agaggagagc ctgctcacat
      181 gtgaggtgtg tttgtgggat agacagaaaa ggggaactct tctgtgggtt gtactggggg
      241 agggtcagtg gacacagtga ctggtccatc tgcaattact gaatgtaaca gcctcttctg
      301 catctcaaaa aagattattt aatggttagt tagctaaatt cagatcagtt ctgtggaaat
      361 accaagtgct gcttttggaa ggtaaaaccc ctttacatag ggaatgaatg tgataagtct
      421 gtgcaggtct ttaatttctc catttttctt ttcttacagc aagcaaggat ttggcacaga
      481 catcctattt catggctacc aacaggttgt tatcctgaac ctctttgttg cactgttgta
      541 gcacactata gcttccttta ctgcagggcc ccctccatgt gtcttaccct tgttgcaaca
      601 ggagactggg ccatctccag tggtggtacc ttcccgtttg cagtgcggtg tattgtacaa
      661 gggcctgatg gcacaaaggg gttaaatgca caatgagaag tgtagtggtg ctttctgatg
      721 acattttctc gattgtgagt gcataagtct aaacttggta gcctgaatag cagctaaaga
      781 ttacaaagag ctaaacttaa cctagaaatc cgagcatctt ggtaagtaca aaactatttt
      841 tagtttacac ttgtagttaa tggcagtttt ctcttaactt taaatatatt gatccaatct
      901 tatcaaattg tagtgggcct gagatctttt tgattagctg attttggaca gactagcatt
      961 ggtcaaatat tcttcctttg agaaacagct caatcttact gtagagcatt aaaacttaag
     1021 tacttacata aagttctagg attccagatg gggattgtgt atacatagcc tgttgtagaa
     1081 agatggaatt tgagagcaga cttaatcctg atttctcaat tacttcaatt tac
//
LOCUS       KCLA01001403             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22813upu ultra-conserved element locus uce-2217,
            sequence.
ACCESSION   KCLA01001403
VERSION     KCLA01001403.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22813upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-2217"
BASE COUNT          221 a           94 c          161 g          231 t
ORIGIN      
        1 ttttttttta ggtggagggc aaaggaaatg gaataaagac agttatagtc aacatggttg
       61 acgttgcaaa ggcgcttaat cggcctccaa cgtgtaagta gtctggagtg acagtgttct
      121 caaagctatg tgtttgaagc tgtaagtaga taacaaagca ctaataaaaa tcttaaggaa
      181 gaaataaaat tatatcgaga ttaaataatg agcagaataa acaggatttt tgcttgctgt
      241 taaaaatcac aatgaggata ggtgtgtcac tatttttttt ttatagatcc taccaaattt
      301 tttggttgtg agctgggagc acagacccag tttgatgtta agaatgaccg ttacattgtc
      361 aatggatctc atgaggcgaa taagctgcaa gacatgttgg atggattcat taaaaaattt
      421 gttctctgtc ctgagtgtga gaatcctgaa actgatctgg tgagtgtttt tgatctgtac
      481 taatagcact gtggaaatgc ttgtttatga aagtgatgag atgttcatag ctgactttaa
      541 cagattgaca cttctgacct aaattactgc agctaaactt ggtgtgttag ggattgtgct
      601 taattgtggg gggaatgtaa acaccaagtt caggttttaa tatataattg ttccattaat
      661 ggtataactg gaggctgttt ttctttacag catgtcaata ctaagaa
//
LOCUS       KCLA01001404             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22842upu ultra-conserved element locus uce-2820,
            sequence.
ACCESSION   KCLA01001404
VERSION     KCLA01001404.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22842upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-2820"
BASE COUNT          231 a          138 c          171 g          227 t
ORIGIN      
        1 cagccacagg cattcaagcc catccattag atcctgtggg gctgatgaag agtttttatc
       61 ctgctcattt tgctactttg acttctgttc ttgttcagtt tataaatagt tatgacattt
      121 actgctagta atatgggaaa aataaaagca gagtaggttt gaaccaaagc atgggtctgt
      181 gcgaggcgcc gggagaggga attggaatgg ggtaaattac gagaatgttc ctcagatgaa
      241 actgtctccc aaccgtaagt catgtgacga taaatttcac ttgagtgaca acaatattaa
      301 caaactgaaa aaaagattga tgtgcatcac gggtccatga atgcaaaata aaagagaaag
      361 gcttgctagc ccgtgatagg cgaggtataa atatgtatca cttggttcta aagtgagtta
      421 tgattacatt ttcctacttg tacctgaaat ctgtagaggt tattcatctt atccctatat
      481 cagccatgac agttatagcc atgcggtgca tacggcacag atacctgctc agcagataaa
      541 tcagcaggca tgaagggacc tgttgttatc aatttgatct tcagaataaa tatacaaata
      601 tgtgtacagt attgttgtca ccaagaacaa tttcccttct tcttgcagat acatttttaa
      661 gaggttgttc caagagccac tttccgacag tgccacgggg agatggaggg aagcaatgat
      721 caggcaggag aactggattt atggactgtt gtctattttc tttcttt
//
LOCUS       KCLA01001405             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22856upu ultra-conserved element locus uce-4900,
            sequence.
ACCESSION   KCLA01001405
VERSION     KCLA01001405.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22856upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-4900"
BASE COUNT          253 a          126 c          142 g          238 t
ORIGIN      
        1 gtgactgtca catttaggat cattgctgag ataactgtag atgttcagtt tgtggacctt
       61 cttcattatt gggtggtaga agtgaagagt gggaatcaag caatcccagt atacaaaagg
      121 gcaaaacaaa ccagaagaga aaatagcctc actatacata tttaatgaat ccgtgaagat
      181 atcccacaca aaggctttga gagttacatt gaaaattcgt gtatgataaa tggatataat
      241 actgcctatg taatggattt cctatttaaa ttttgcgagg atttaatcag ttgggcacag
      301 ctgtgcagga tgcaccataa actatgttga aaaatatgta gacatgtaca tttatctgct
      361 acaaattaag ctcacttaga ggtggtctta atggaccatg tagcgatcat tacaagcata
      421 aattttaaac tgtctgtttc cagtgaattt gctttgaaaa aaaattaatg ctcatcctta
      481 gtggagcaca gtaataaatg gaagtacgct taatctgtta agcactaata acctagcaat
      541 tattcattat gaaccccatg ctgtataatg tatgtctgca acaattttat cagtgatgct
      601 ttacttaacc tgcaaaggta taatttttat tccagcatac actttctaat tacacaatgg
      661 ttgaagggat atgccattac atttacagaa tgccccgtcc ccttggttta gtgtaaaaca
      721 tctatacagt cagggattgt taaggatagt aaccattta
//
LOCUS       KCLA01001406            1838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22872upu ultra-conserved element locus uce-457,
            sequence.
ACCESSION   KCLA01001406
VERSION     KCLA01001406.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22872upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1838
                     /note="ultra-conserved element locus uce-457"
BASE COUNT          505 a          415 c          378 g          540 t
ORIGIN      
        1 gtttctactg tgtgtgtggg ggaggaaaaa caaacccacc cccaccctgt ctgcatgtta
       61 aatcagcaag aggaaccccc ttaaagcaag caaaacgggg ctggacaaac ctgcgggata
      121 actggcatca ttgaaaacat ccctactaca acctttggga aaacgccccc caaaacccta
      181 ggaaaagctg aggagacttg ggcccctcgt tctcttaaca agcaccgcgt taaaatgctc
      241 ttcttgaagc aggaaggagt cttttcttat tgttgctttt gctagtgcag taccagccgt
      301 gtgaccacgg caaagcagcg cgttcgacat tgaaatgcca tcacattgtc taagttccct
      361 tctcgtcttt tttaacacaa agtatatttt ttccttcaag ctccaagccc tcatctttgt
      421 gtctgagatg ctctcctgtc tgacaacagc aatttagaag agttaacttt tatcgttcat
      481 tctgctgtgt aactttcccc ttcaaatttc tttatctgcc ctctgagctc atctgaactt
      541 tcatgttctc ccagcatgca ggcttgcatt caaaactatg tctaatagac caaataagag
      601 gttaataaga agtggcaaca gaaagaaaaa atacaatccc tggtaactga taagaatgac
      661 agtggcagcc ctttattgtt tgtcttcaaa tatagagtta aagatcttta aaaaactaaa
      721 ttttgacgcc tttgaaaaga aagaagcaca aaataacaac agggggttat tgcctgccag
      781 ccacagggga gaagctccat aattcttatt ctcccttttg aaggctgtta gaaatctgat
      841 tcaaaaaagc aacagcagaa ggagaaagcc tcttgaggct atcgccattt cctgtgatca
      901 tgcataatgc gtttcaaaag tgggttttta ccaattctgt tgatcaattg cacctccttc
      961 atattccctc ttttttctgc tgtgtttaca tctgatgtga ctcaatgaca agcgctgtct
     1021 gagactgtga aacagacctg tcatgttgat ttatgggcgc atcaaaccac gacttgtcca
     1081 aactgaagct cgcagttcat taattagaga gttgtgactt tgaagtcagc tttcagactg
     1141 tggtttttaa catttggctt aatttatatg ctcttgaatg tggatctcta aggaaaaaac
     1201 tgaaattccc ttcttgtctt tgaacttctt ttgaccgcac aataatcatt tctttgtcca
     1261 gagtgatgcc tgcatcccag agtcattaac gcgcattgaa ctgccactga tgagtaagcc
     1321 ctactgaatt agaaaaacag ccagcaaaac aaagctgaga gcattctgca cagtgatatc
     1381 tcacaattac atgccttccc tccctgtgcc atttccattt taattactgt tagtccttta
     1441 gatttacatt ttagacactt tttaatctgt tctcttttta ttatagtggc gcccgtaagc
     1501 gcgctatggg taaggttgtg tcagcgtttc cattataaac ccccctattt gcaggggttt
     1561 ataactcagc tggaaaaatt cactctgggt tgaaacttgg cacaggtagc acgatttgcc
     1621 caaattttaa gggggggtgt atgtgtgtgt gtatgcgtgc tttgagcagc gccacttctg
     1681 aagtgacacg caagcgctgc tgctatcgcg ggacatcacg cggcgtctcg tgccaagagg
     1741 cagctctcta gcatctaccc aaggcagcgc tgatgttgga tgaaacatga aagtctcaag
     1801 ctgctggtga atagagaggt gagctcggtg ccttgaaa
//
LOCUS       KCLA01001407            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22900upu ultra-conserved element locus uce-1415,
            sequence.
ACCESSION   KCLA01001407
VERSION     KCLA01001407.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22900upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-1415"
BASE COUNT          291 a          229 c          200 g          284 t
ORIGIN      
        1 ccgtaatcac tcactgattg cagagctccg ttacctgata cgtgtgtcag atccccgtga
       61 tgttacaggg tttagaaaca gtggctaaca gccacattta tttagatggt aaatgttcct
      121 tatgtgtgtg atttgggggg ggcatgattt tctaccttcc aaaagcagtt cctaaaactt
      181 gtctcacttt tccccacttt tgtgagaagg cagaggaact ctcccatgcc aagagacaaa
      241 cgtccccaga gtgatggaaa tacacggggc tgccaattat ccatgtttgt tttattacca
      301 gagctctgct ttcgggaaca attcccgaag cacaaactct agatggcaac attgcactga
      361 ctgtattagt caaacaaaat gtcacggcaa agccccgcgt ctcctcttta tcaacatttt
      421 atgtgccaca gatctatagc ctcttattat aagtgtaatg aagcagaagt tattgaggca
      481 ttttattgat tgctcagatc acaagtttac tgtcatcctg aattggcacc ttactcgctg
      541 aagcaaactg ctgacacctt tttaaaaaag tgacaactac atctatttca tgaccagaaa
      601 tccattttca tctcgatcaa gacaagaatg caattttcac ttcatttaac tgatgttagg
      661 cctgctcgag gcatggcgct tcgaaaaaca cacaagttta agggtcttaa aatacttggg
      721 gtaactagaa agcagctcag ctgtgggaaa gatttcaagc atctctcgga tccataaaca
      781 agagaacact ctaagaatca cttatcctgg ccagcaagag ggcagttttt caatttccaa
      841 attactcaaa cgctggcttt atttcctttt aggtagaagt gatgctggag catcacagct
      901 ttcacacgga acccagtagg cttgtacaca ggattacttc ccgagtggtc cctacccagg
      961 tcaaataggc ccacttgtct ttctgtgacc tagaaagaag gaaa
//
LOCUS       KCLA01001408             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22916upu ultra-conserved element locus uce-285,
            sequence.
ACCESSION   KCLA01001408
VERSION     KCLA01001408.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22916upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-285"
BASE COUNT          272 a          162 c          194 g          288 t
ORIGIN      
        1 ctaaatggat gttctgcctg gggaaggatt gcaacagtag ccaataaata atcgatttca
       61 taagtgctat tgtatacaga gaccctgtgg aaatatcaat tgggttcata aaattcctta
      121 cctcttccat ttttacttgg gggggaaatg ccattctttt ggagaactga agttcagttt
      181 actctcagtg caaatttcga aagtggaaac tctggatgtt atgtgcacaa ggcagttgat
      241 ttcaagagat cagaaaggtg tttaatttaa gaataacaac aacaatttca acattctgat
      301 ttgtcctgca ttacagttac ctgtagagaa cctctagtca tgtctatctg tttttgatgc
      361 ctctacagaa taactgtcca gcatcctctg cccaaccaat cagaatgtag gaaaatctac
      421 cgatatgacg gaatctactg tgaatctacc taccagaagt atgttgaaat ctgtgtgagt
      481 cttgcctcta gctcgtgcat ttagtgctcg tgctttcccg ctattcagaa ttgacacgtg
      541 tgttgagacc gtacacttgt gtttgtgcaa aacctctgca gcaggggcag agatgttgtt
      601 tgattctttg ggattgtgct tgaaaagcta aaaagcaaat aaaccaaaga cttgagtaaa
      661 tctcttaggt atgctgctgt acagagctgt aaacaagaag gtatacgcta gaaaatccag
      721 gcaaaatgta ttgcacaggt gcttcacatc gtagggattt gaaaggtgtg ttatgtataa
      781 attagctgtc acttttttca gttgtgtaat ggaatgatga gctgtaattt gcataatcct
      841 ttaagaagtc aaattatact gtcatgtagc agacttaaca tgctagctag gatttcatag
      901 ctttgcagct aattag
//
LOCUS       KCLA01001409             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22931upu ultra-conserved element locus uce-590,
            sequence.
ACCESSION   KCLA01001409
VERSION     KCLA01001409.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22931upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-590"
BASE COUNT          220 a          190 c          220 g          244 t
ORIGIN      
        1 aatctccact cctttgtgcc ctttattcac agcattaatt gtgggctccg acggtatcgg
       61 ttggcagatg ctcccttatc tgccccgcga tctgcacgag ggggggggat caaataaaaa
      121 aagcacaagg gctggcattc aaaaatcgtt cctcggcgta tcgacacttc agttatcaac
      181 agcccttatt atctgcttag cggcgcatcg cagcttgccg gtgacataat aagctacaaa
      241 tcagggatgg ggcctggctg cattctccta attgtgtgtt ttcaccggaa ggaaaaatta
      301 tcatcgggcc tcttgtcttg atgagaaatt gacattttct ggcggagccg ggcgagcgca
      361 gcgcggggag ataagactta tagttgtttt aaaggagtgc agccattctt tgcgaggcct
      421 ctttattgct ccagttgacc cacttgatga gtatggattt catgaggtct ttttcagcat
      481 ctgaactata aaaggttcag aatgacacca ccccttatag acaaaagata accttgccct
      541 ttgaatatat cgattcttta ttaactaggc tgtttaatgc aatgaaatga ggcattagat
      601 tgaagcctat ttcaagtgct ttgaataatc tttaaaagct tgaaagactt tagaaagctg
      661 ctcggcaata attggaggag actcttggag actctcttcc ttaaggaatt tttaccgtct
      721 tcctatggct aaactcaccg tgggccgaca caacgttcag caaggtaggg gcggagaggg
      781 ccgtgaggcg ggcggagggc tgctcgcgtt ccgagcacaa aacgcatcgg gttggggctt
      841 tccgtatggt cttcgtgtga gttagatgaa catt
//
LOCUS       KCLA01001410             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22947upu ultra-conserved element locus uce-3871,
            sequence.
ACCESSION   KCLA01001410
VERSION     KCLA01001410.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22947upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-3871"
BASE COUNT          252 a          131 c          142 g          182 t
ORIGIN      
        1 gggtgaagca tgctcaaaca ctgatttaag gtatgtactt gcatatatga accagcgacc
       61 ttaagattca tttgcagaag cagaatggct gctcctttgc taagaatatt caagtcagtt
      121 tgttcagtac aatcatctga aatgcagaaa aaatattatc agccaagttc atatgagtaa
      181 taatatttag atagaggatt taatggtaat aaaatgataa caagggattg gtgccataaa
      241 acctgtcaaa taaatgtaaa ggagagaaac ccccaaacca tccttcacgt aaaatctccc
      301 cacaagataa aatacagctt ttgggcaaaa agaaagtccc attgccagca actttcataa
      361 ataattcact ggtagcttgt aaacaataga ggagcacagt atgaatgcca aagagggtct
      421 ttatatgtca taaagccact caaaagtgca cttgctgcag caagtctgac tgtgagcttt
      481 gatgtgctga aaaagaaact gctatgctga ggtcatcagt tagtagaaaa caatttccct
      541 catacagaga agcagactga ctgctgggct tctgacacag acagattgga tttaaaaaaa
      601 cactgctgcc taatgtggga ttgcaggggg aaaaaatact ctacacacct tgtaaatgac
      661 cagagcctga agagagtgtc tcatcttttt tcactggcta tcaaaag
//
LOCUS       KCLA01001411             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22962upu ultra-conserved element locus uce-2454,
            sequence.
ACCESSION   KCLA01001411
VERSION     KCLA01001411.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22962upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-2454"
BASE COUNT          121 a           65 c           79 g           91 t
ORIGIN      
        1 atgaaaaaaa aagccagttt agagaacaat gtaggcatgt gtttttaaac tactgttcgt
       61 gcagtctggt caggactgtg tgacacagta tacagtgttt tgtcatccaa ggaatgtctt
      121 tgatcaagag tttatgcaag aaggaaaaaa aagccatgaa accctaatcc gttcccacag
      181 tccagtaaac gtgagctgga caaacagtgg acaatagcag taaagcttgg tgctggaaca
      241 atggctgcaa ctaaaaaaat taaagggttg ctgactcaca gttcctacta tcaagaaaga
      301 ttccatgcgg tgtcgattat tcccctgaat cctgaagatg ctgaaggtta caaatt
//
LOCUS       KCLA01001412             944 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 22977upu ultra-conserved element locus uce-4227,
            sequence.
ACCESSION   KCLA01001412
VERSION     KCLA01001412.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 944)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..944
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="22977upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>944
                     /note="ultra-conserved element locus uce-4227"
BASE COUNT          286 a          217 c          160 g          281 t
ORIGIN      
        1 gtgaagacca gccgcagggg gggatacagc ttgacttgat ggagtcacgc tgatctacac
       61 aagtgttttg cctgcatcaa aacaaagctt attaatattc caccacactc gcttctcttg
      121 tcaattgcct cagtaaccct tcctctttca gaaacctgag atcctgtgac ttaacgtcat
      181 cttaagcctc gctcacggaa ttcaggggtt ccaagtcatc cactccgctt cgacatcatt
      241 attcccttta aacacccgct ttaacagcct tttgaacttt ttacgctgtt taaagccaag
      301 ggtaaatttg tacacaacaa taaaacacag cgctaattcc tcatgctcct atgagcaact
      361 gtgtcactca caccgagagc cgctgactgt ggcgttcgga gctttcgttc ctatttcaca
      421 tcactcaatt gagccttctg cagaaaagct tttaacaacc acatctggtc tttaataaat
      481 cactgcactt tgtcttcctg ccaaaactcc tcctttatct aacttacatc ttcatgatga
      541 gataggaaat cacacattat ggtggtgaca aacaattgta attatgtcat tagtagccat
      601 ttagtctaca aaggttctca aaaaggaaat ataatgcaca atgagaagta taggataata
      661 cattgatcac agttctaatc cgctttttac tccacgagtg taaaaagctg gcataattca
      721 cgggcacagc aggcagtaat agtacagcac tttatgaact atgcagctat tttattcccc
      781 tatctactta aaaataaaaa agcttttaat agcttgattt agacataaaa gttatttatg
      841 atgctttgct gattataaca cttttccaga aagtgattct ttctgaactg taagtacacg
      901 ttatgtcatg ggagatctcc gagaacatca ccggagaagg aaaa
//
LOCUS       KCLA01001413             381 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23008upu ultra-conserved element locus uce-3445,
            sequence.
ACCESSION   KCLA01001413
VERSION     KCLA01001413.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 381)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..381
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23008upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>381
                     /note="ultra-conserved element locus uce-3445"
BASE COUNT          116 a           58 c           65 g          142 t
ORIGIN      
        1 gtagataaat cttactgtat aagtagaaaa ttacttaatt tcatactaga aatggattga
       61 tgctgcaagt taaaatggac tgttcattga agttccaaat gtggtagcaa aaaatggtgt
      121 cttaagtgct tagtgttcga tgtcattaac agtttcgtaa tactctacat tgtagaaaga
      181 ttttgatact aaactgtgtc attgtacata gttctaatgc attgtattga ccaccagtac
      241 ttctataatg gtagattatt gtttgtgcat tcagaccttt aagcattaaa cataagtaac
      301 ttctaagacg catttttctt tttttattcc attcccttgc tctttttgcg tgtgataatc
      361 acagctgcat gtgcaaaatg c
//
LOCUS       KCLA01001414             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23024upu ultra-conserved element locus uce-3493,
            sequence.
ACCESSION   KCLA01001414
VERSION     KCLA01001414.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23024upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-3493"
BASE COUNT          170 a           84 c          100 g          223 t
ORIGIN      
        1 gtaaataatt gtctggaaag ttagtgtgga tttcaccgtt tgttgttttg ttaaaattgg
       61 ttacgggtgt tcttttcttg tgttacagaa gccaacctga aatgaaacta ctctagaaaa
      121 attcattgtt ctctgtagtt gcagctgtac ctgaaataaa aatgttattg atgactgaat
      181 tttcttgtgt gtatatttgt tgagctgtat taaaacagaa aaaaaacatt acttgtattt
      241 tcttcgctct gtgctttgaa aacatctatt tgatttcacc cccatctgtt gtaatcaata
      301 acctgaccat cttgtttttt attaaatgca cttactctta atttcatcca ccagtggttt
      361 tagagagaat aatgtggagt tacctatata ggtttgacat tataaatcat ttcttgaggc
      421 taaatcgtat agtggtatcg attgatcctg atatatcaca gaaatttact gtcacttctg
      481 ttttcaatta aagatacaat cagtcagata atgacttaat tggattttac agaagattga
      541 gttttattgc ccagtgcttt acgagtttag ttaagga
//
LOCUS       KCLA01001415             550 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23039upu ultra-conserved element locus uce-7471,
            sequence.
ACCESSION   KCLA01001415
VERSION     KCLA01001415.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 550)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..550
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23039upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>550
                     /note="ultra-conserved element locus uce-7471"
BASE COUNT          166 a           90 c           89 g          205 t
ORIGIN      
        1 ttttttttct ttttttctcc ccgagcttct atttccaatg acttatttag atgtaagcaa
       61 tgacagctgt aatcgtgttt taaatcttgc tttgtatcct tagttataat gttgttcaat
      121 taatattcag aataatggaa gtgatgtgcc cctttgaaaa agacttgaat gcaggccaaa
      181 gctttgggaa actgattctc aagaggatta atcagcattt aaaacttgca ttaataaaaa
      241 tctgatcttc tactgtgtgg catgcataat acttttcatt tttaagcatt ttattttaat
      301 aatgtggtat cctttgtcct gatttttaaa gggattttaa aatctaactc cttcaaatca
      361 atcctgcttt gacccctgtg cattctttta ctgaatataa aaacattaaa gaaatcctta
      421 gttcacaaat acctctatta ttaaggacga gccatgtgca gagcctgagc acgtttgtaa
      481 tagaaatgat atagagattc ctcaggaatt tatgttaggc aagggttcac ctttgcatgg
      541 aaattattga
//
LOCUS       KCLA01001416             223 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23055upu ultra-conserved element locus uce-5223,
            sequence.
ACCESSION   KCLA01001416
VERSION     KCLA01001416.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 223)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 223)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..223
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23055upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>223
                     /note="ultra-conserved element locus uce-5223"
BASE COUNT           89 a           33 c           51 g           50 t
ORIGIN      
        1 gtaaataatg taatgatatg tattgttaag ctacatatac tgtaccaggt gcaagtactc
       61 ccactcctca cttagatata atctggggca gtcaacaaac acagatgtgt tttaacaaaa
      121 agaaagaggg ggggagcggg aaataaagaa aggatgaacg agaaaaatat gaaaacatat
      181 gtaagataat tgaactgagc taacgatcca ggtagaacct ggc
//
LOCUS       KCLA01001417             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23071upu ultra-conserved element locus uce-44,
            sequence.
ACCESSION   KCLA01001417
VERSION     KCLA01001417.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23071upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-44"
BASE COUNT          126 a          133 c          110 g          121 t
ORIGIN      
        1 cccctccgct cccgaacatt tttgagccaa taaagcagag ggaaactccg cccgcgaggc
       61 aacgatccag cgctctatga tttccatagc gagagcacta aagacaaata taatcctatt
      121 gatggagttg tataaagtgg cgaacttgtt ctcgattgcc tgccacgatc ccagagtgat
      181 ggcaacaact ggtcaggccg atttgattac taataagaga gatgtccctt ctgtcagata
      241 gctcacattc tccgctaagc aaacagctat tgcagctagt taaacattag cattgctctc
      301 cgctggtgct gcatatttct ttaggcttaa ctcggggact tggccgggtt taatttttca
      361 ggcactggac agcaaagttc acgatcaaaa gagaactggg ggctgcacgc taccaaaacg
      421 cagaccttct cccaaccagc ccgaccctcc tcttggggcc gtgcgaacgt ttgtcgctcc
      481 cgtttatcac
//
LOCUS       KCLA01001418             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23086upu ultra-conserved element locus uce-534,
            sequence.
ACCESSION   KCLA01001418
VERSION     KCLA01001418.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23086upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-534"
BASE COUNT          189 a           94 c           89 g          182 t
ORIGIN      
        1 gtttgcaata gatcatctat acaatttgta atctacaagc actaaaaaat agaaaatcat
       61 caatagttta actcaatgct ttatttaata taaaaagtct gcaaatttat ttctggccaa
      121 ctgtgtatac agtcccaaac atattaatgc accaaatcac tcaaaccaag ttgccatacc
      181 gtgtgtctgt gaatgtcctg tatataatta attagatgtc tgggacagtt ttattggtaa
      241 atctggttat tttaatactg taatagggga aaatgtgcta aactattagg caagttctct
      301 tcctttaacc tacattatgg catccagagc aaaaggacaa aatagtaaag ccttttttaa
      361 tctcactttg atcaaacaac cctctttcgc caatcacagc tttgtgtgtg atatctttct
      421 gctagtgttt cttatttaat taaaacagac actgacagaa ggacatggat taggactgta
      481 atgatgcatt tacttagatt aatcggaggc tccttttgga gtaatggctt aaacaaagaa
      541 caaaaggaaa ttgt
//
LOCUS       KCLA01001419             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23100upu ultra-conserved element locus uce-898,
            sequence.
ACCESSION   KCLA01001419
VERSION     KCLA01001419.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23100upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-898"
BASE COUNT          212 a          146 c          146 g          219 t
ORIGIN      
        1 ttttgttttc ttttaaggat ggttattgat ctcttgctga gctgagattt cagttttatg
       61 ccagatagtt tgattaatgg cttggtttct gtaagtggac tgaatgggga taggaagcgc
      121 aagccgctcc tgccgccaac cctaactccg tcaagacgca tagctcatta tgaaacagtt
      181 atcaagtata catgaaaaat taattgggct cagtttgatt ctgaaaagga tcagctttct
      241 acttggcggt ccccccaatc tttccagatg ttgcacgcta gcccctcgag aagcagcgaa
      301 gggagatgta ttaatacatt gtattgatta gatcaagacc cctgacagtt atttgtagag
      361 ataccatctg gccgctgttc gaattccttc accaaaaaca ggacgtgaca tgttattaat
      421 ctcaactctc taagtataga cagttgcctt ttctgctaaa ccgcatttta ccattccgta
      481 ggagatggag gcagacctga agggtgctga aattaaggtt attacacaaa ttgagccata
      541 tggtccaaat atttcaacaa gaaaattgcc aggcaataaa aattgctcct gccttcctaa
      601 tggtgtaaat tacagtttaa ccatggctct aatgatgtcc ttctgccgcg cttaactact
      661 gttacatgaa ggacattgtt ttaaaaatat aaaaaacaag taaatgccag cagcatgttt
      721 tac
//
LOCUS       KCLA01001420             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23116upu ultra-conserved element locus uce-5771,
            sequence.
ACCESSION   KCLA01001420
VERSION     KCLA01001420.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23116upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-5771"
BASE COUNT          145 a           88 c           89 g          136 t
ORIGIN      
        1 gaaaggtcaa gagacatgaa gtttcttgtg gaaaaactgt ttggattttt aggcagtctg
       61 cttagcactt gttcttcaga tatcccactg ctcagaggta gaggattttt ccctcagtgg
      121 aatacttctg tatagaaaat gtgtgtatta aattggtaat tgtgcaactg ttgcctttcc
      181 agaatctact ctgagaagga gaaaggccag gccacaagca tctctaactg ccactcacag
      241 tagtacttta gcagaagaga tagtggcact gctgaggacg ctccattcgc tcagccagtg
      301 gaatggactc ataaacaagt acatcaactc tcagctaacc tccatcaccc acatctttgc
      361 aggaaaacag tcagaagggg tagtttccac gttttaaaat tttttatatc aatatttatt
      421 ttaaaatata aaatgtttat aaacaatata aagcttaa
//
LOCUS       KCLA01001421             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23132upu ultra-conserved element locus uce-6995,
            sequence.
ACCESSION   KCLA01001421
VERSION     KCLA01001421.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23132upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-6995"
BASE COUNT          243 a          174 c          181 g          208 t
ORIGIN      
        1 acacaatccg ctgtcagcct gcgcttccta aggaccagga ccgtcagatg aagctgaaac
       61 gactggatgc tgcaaagcac cagtgaggtc tgagcagagg atgcactgcc ttccactgga
      121 tatttctgag tcagagctgt gaagttcttt gaacctttac taaaggaatt ttgtatttga
      181 aatattttca gaacttcacc attttagcag agcagacaca acacagtgcc tggctcctgg
      241 cagggaacga caggagggac tgagcaagca gtggctaagc actctcattg aaaaaaccag
      301 aggatgctgc aataattgtc ctgagaggct agaaaggaaa catgactcta tgctgacagc
      361 ttagctcagc gtgaactctc atttttcaca cggagctaat taaaaactga aattagttaa
      421 atatggaaat gacacttgca agcactttag ctgaattctg gcaaaatccc tctagagtgc
      481 tgcgacacta cctgctgctt caaaactccc caattgaatt tcacagttaa aaggctgagc
      541 aaagggaaag ttattacaga gatttccaat tcaaaatgcg tctgttaaat tctaaattaa
      601 atttcatggt agccctttca gtaactgggg acatgctgtg cagtccaacg atatggtgct
      661 caaataatgt ccctgcatgg attctctgat tatctcacct ttaggcacta tgctggttgt
      721 gccaggactg tgatgctcac gagggtagtg gcactacaac actacaaaga taaaccctga
      781 actgctggtg caggagttat ttggaa
//
LOCUS       KCLA01001422             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23147upu ultra-conserved element locus uce-8036,
            sequence.
ACCESSION   KCLA01001422
VERSION     KCLA01001422.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23147upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-8036"
BASE COUNT          228 a          182 c          216 g          238 t
ORIGIN      
        1 catgcacagt ggtgtgagaa ctgcagtagt gatgtgtcct cacatctcta ttcctgttct
       61 tgtccatggg acccttaagc tatcggtagt ccaaatggat gactttggcc gaggtttggt
      121 ctgtccatag gtacactgat tcaaaaaatg tgtttgagag cctccctgtg aacttctctg
      181 tcagcacaaa cacagtacac ccacgctctt ggtccctttt tgtctcatct ctggtgtgga
      241 cattgccatg gtactgtggt gccgtctcac taccagaaca ttacatctga gtctttgaac
      301 caatataaat caccagctga ggaccatgaa cagccaaaga agtgtttcca gatggaacag
      361 ggacaatgat ccatctccca tttgctataa gccttgagcc tatgggaact ggctgagttc
      421 ccaccattta acaacttatc caagatacag gtgctacagg aaaccgactt acctgtatat
      481 tttatatctg gttgtaaatc cttgacgatg tctttccaca aaggataagt agctccgtga
      541 gtgatggaaa ggccccctgt ctgaaataag ccaatcaaat tccttggaga catgttggtt
      601 ggtagcagct gggtcctggt gggagggctg tactagtata tggtcccata taacaaggag
      661 gtagaggaac tcaacaagcc tccagttcat gcttttctgt ctgccttttt tctctcattc
      721 ttgctccatt ctgtggagtc ctgttggaaa agagagggaa gatggggaag gaaagagaga
      781 gagagagatg gaggggggga gagggaggaa ggagagaaag agtttaaaaa tgggaattgc
      841 tttgatcctt ggacaactgt ctct
//
LOCUS       KCLA01001423             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23162upu ultra-conserved element locus uce-7047,
            sequence.
ACCESSION   KCLA01001423
VERSION     KCLA01001423.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23162upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-7047"
BASE COUNT          131 a          106 c          125 g          152 t
ORIGIN      
        1 agggggctgg aagtcctgtg agtgcagtgc ccaggctggg gttgcagagg aagctaaggc
       61 caccagccac gtacaggaag caatctcaga gcaggcttca aatgccagat tccaggcaga
      121 gtttaactag ccactgacag ctctgtaaac aaagccggga caaaaagaga acagctttcc
      181 cttttctggt agtcattttt ggtttggggg ctgcagggga attctgtaat acttcacttg
      241 atgggatata aacagaggtt ggaaaggctt tgtatatgaa gaacggtaaa ggggaaacta
      301 ttccatggac taaatcataa agaagaaggt agggcgtggg gaaaacgtgt ggacaaagaa
      361 aaaaattgct cccttttctt ctctagaaag ctttgtacct cgtttggctc ctcctggctg
      421 gtatttaaaa gctgctgttt atttttcttc tctcttttcc ttttcccctt tttcttgcct
      481 ctgatttttc tcatattatc ttctgctcct tctc
//
LOCUS       KCLA01001424            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23177upu ultra-conserved element locus uce-7465,
            sequence.
ACCESSION   KCLA01001424
VERSION     KCLA01001424.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23177upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-7465"
BASE COUNT          313 a          172 c          193 g          326 t
ORIGIN      
        1 aattaatgat attgcttctt gattaaaatt gattacaata caaaaagtag aagtcagtaa
       61 gagttcatat agatgacagc aattcattcc ttttgcttca cctcagagct agcaaatcat
      121 ttgcaagttt cttaaactga aacgacagaa gcctctttct aagaatttga tcagcaagga
      181 gcaactcagc gtggctttaa tatttcatga aatggggctg tgaggtatcc aacaatcaaa
      241 ttcactttca agtacttatt gtataaatta ctcaacaagg atggaaagaa gagttattct
      301 ctatcatttt tagaactggt tccagcagct tgtctctgga gttaaataga gctgtcttga
      361 taatttttac atatagactt ccttgaacac taaaaagaat tataataacc tgattataaa
      421 ttcactgtta atatagcctt caagctgaga acatttcact ccagtagtta atttagtctg
      481 tggtaaattc tcactgttat ttaatgtcat ttatcacctg ctgttttgtc ttactgtgaa
      541 catcctgcct gccctgtact gtctacatta catggacctt ctgtgacttt aatgtactca
      601 gaacaaagac tccaaagtgc ttctatcggg aggatttggc aacttgccgt agatatattc
      661 aagccatttt gctgcctgtc actcagtgct ttacaaattg aactctgagg agaggtaaaa
      721 agggtctatg aggctttttt tttctgggaa gaatatgcta ataaagcgcc atcagcagga
      781 agcaggttgt gtctgaaaga gttttgtcaa ctctgaatta attttgtgtg ttaagaaaca
      841 cgggggtgct tctagagccg gtctgtggta attaatcctt cctgtttctg gaagagcaga
      901 actgtaataa atgcagccca gatttaacag atgtgtgcac acaatgtctg ctttatgagg
      961 agtaaaacaa aatgatgggt gtagaacaaa aaatgttgat ttaa
//
LOCUS       KCLA01001425            1068 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23192upu ultra-conserved element locus uce-2642,
            sequence.
ACCESSION   KCLA01001425
VERSION     KCLA01001425.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23192upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1068
                     /note="ultra-conserved element locus uce-2642"
BASE COUNT          340 a          222 c          216 g          290 t
ORIGIN      
        1 gcatctcacc gcttttcaat acgcacgaag ttattgaaat tcaaatgaaa gtatgtcaat
       61 tgcatggctt aaacatatca aaaaaatgag gctcaggatt tcttcaaccc ataccaaaca
      121 catgctttac aacactcgaa tttctttgga atataggagt tccttatcca agttaaaatg
      181 tgaacctatt gccacagcac caggaagctg gttttatgtc tagtataaaa caaaacccat
      241 gttcttttcc cctcaagcat gctagaaaaa gcagggctgt ctaaaacctt catgtcacag
      301 agtcattggg atacagcaat gctaatgtga agtacgttac tggaaggatg acataccatt
      361 cagctataat tgactcaaag gaaacatcag gcatttgggg gagaaaaagc aggaagttta
      421 gctgccattg ccaattggaa aagaaaactg taacagccta cctgagacaa gcgagactgt
      481 gtctttctcc catgagacaa cagtgatgta tgcctccaca gaggagggga taatgcactt
      541 gaacactgct acattgcctc tcatggcttt ctggtcctcc acacggacag tatagggttc
      601 ccgtaaaact ggagagagaa gagatgtcat ggaacaagtg catctgatcc atttctctgg
      661 ctaaccttgc aaaattctcc ttagaaagtc actcagaagt tgaattctct tgtgtcagta
      721 tacgttattt tgcacagcaa ctagcaaatt tatatgaaaa caaacccaag cctttccact
      781 tcctcaaaat ctgtatttta ccatatgatt ctcttctaat tctgagggca agtagagaga
      841 cttcgtaaga atggcatatt tatatggata aatgttgtta cacctcctgg cactggtttc
      901 tcatgccgtg tttcccatca caacttgttt tctgctctgt caaagggtcc aaagtacata
      961 caagcactgt gtgtgaatta gacatccggg ggtagaagag aaggtcggtg tcatttagga
     1021 tttcaaaaaa gtgagaaccg aaggagaaaa tcaatgaagg tgacagcc
//
LOCUS       KCLA01001426            1070 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23208upu ultra-conserved element locus uce-5659,
            sequence.
ACCESSION   KCLA01001426
VERSION     KCLA01001426.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23208upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1070
                     /note="ultra-conserved element locus uce-5659"
BASE COUNT          345 a          204 c          197 g          324 t
ORIGIN      
        1 ttctgaggca gaacaaatgg aggcaaagtt tgccttttgc acagtgccac tgtaacgcac
       61 aatgttgcaa tggaagtgat ttctctttgt caaaatcaat caccatatca gttttaatca
      121 gataaagatt ttggcttttc ctatctaaat tgcccttccc acaagcatca gtactccatc
      181 gccaaataaa tatgttgata tttgatagct catttgaaca caacggtatt tacatcttag
      241 ttggttagat tttcatttaa cacaagttat gggttcacat tgaaaataaa aacaatactt
      301 ctctgttcct cttgccattc atgtctactt ttgtttcagc ctaaaataac acattgctgg
      361 agggtatttt cttaacgctg ccaaggctga atgcaagccc tgtggaaaat gtttgtgttg
      421 ggcttgccat ggtccaggct aatagcaatg tgatgatgta taggtgaatt cctgctcctc
      481 aagtcctctg tgacatacgg attaggcctg cccttatctt ctaagacatc tggatgagtg
      541 tctgggtttt aatttcacaa taaaatcact ggggactaga gttatgttat gtgcttatga
      601 acaaagtgga atatccctgg taagggcaag agtggattac cttagataac tttacttaaa
      661 ccagagaaca tttgagaatc ttgaagaaag gaaagaggtt ccaccaataa aaacaaacac
      721 aggcttaaat ttgtgttctg tgtactaaac attttaaagc tcctggaggt tgaaatatgg
      781 ccacatgtaa atggactgat aaagctaaga caactcttga aagaccagat cagacttccc
      841 aggacaacta ccagcactaa atcgtaatgg catgcataaa tcatttgaag acagatttat
      901 gcagaagatg ccactttaaa gtcaaaatac tctgctttaa tcaccagaaa cagtatgtgc
      961 atgctaacat ttgcagaaaa ggctccaggg caacatgaaa ttagcatcct aaaattccta
     1021 aatacatgct tttcctaaaa tgaagatttt tatctattta tgcccataaa
//
LOCUS       KCLA01001427             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23223upu ultra-conserved element locus uce-7981,
            sequence.
ACCESSION   KCLA01001427
VERSION     KCLA01001427.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23223upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-7981"
BASE COUNT          276 a          166 c          173 g          308 t
ORIGIN      
        1 aatgggacac tgaagggttg taaagtggga caaggctgct tctgagcaga tcatttacct
       61 ggaagaaaac tccagaagat ttatggcata ttagataatc ttcaacaaaa tatgagatag
      121 aaactctgtt tactgacttt gcatcatgct ggctgttttg gggggaaaag ctatgattat
      181 aaacaaaaag aagtgttgta acaaaacaaa caactccgtg attcttcttt taagttagat
      241 gctttcgtag taggcagccc taattgctgc aatagctttt aggtgttcta aagcactcaa
      301 gtgaattatg caccacactg cttgtgaatg acacagccat ttctgactcc attaatatgg
      361 aagattttag tcaaatgctt ttaaaagata gcttctcttt atttgtaatt tcagactcta
      421 ttgatttcct tctgttccct tcattatgat ttcaattgat taccttggca actgcaataa
      481 caatgattgc acttgacact gtctgagatt cctgtgatgg tatttgaata ggaatggtat
      541 aatttgggga aaaatgccta caaaaacctg ccattaacag tacacttaca ctttactttt
      601 attgacttag ccctctttca aacaggcctt tgtcaaggaa tctgttgcta gatatcagga
      661 tttcagtgac tcctcgcagt aaaaaattct tagtaacaaa cagagaagat tttatactgg
      721 tagtcttttt tcatcactgt gacacttcag ggaaacattt ctgtttcttt ggtagccagg
      781 ctcctaagac ttaggaaaca gtgttcatgg ccagggtgtt cttttactaa ctgtgttatg
      841 accttccaca cagaagagtt tgaagtactt gtaataaatg ttgagattac tttattcaat
      901 ttcactgcca gttctgtcca gta
//
LOCUS       KCLA01001428             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23239upu ultra-conserved element locus uce-654,
            sequence.
ACCESSION   KCLA01001428
VERSION     KCLA01001428.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23239upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-654"
BASE COUNT          212 a          149 c          103 g          221 t
ORIGIN      
        1 ttgttacctg tgagaagata cgaaccccca cctctctaca acctcctttc ggtagttgca
       61 gaagcagtaa ggtctctcct cagcctcctt ttctatgttg cctctttcaa taccttgtct
      121 ttccaaaagc ttctttaaaa agaaaaaaaa aaacacatca tagcattgta tcggtcataa
      181 gtgaaagaga ttctcttctg ggtgatatga aattcctgaa caaactttcc atgaagtaat
      241 ctttacctac aggaagtcaa ttaaaatgtg acaggagaga ttaagggctc tgtgacagat
      301 ttcactggtc tgtgctcagt atagacacag caatgctata acattgaagt tacaatgaat
      361 atttaacaat ccaatgacta actactctac aagagttttc aaaataatgt gatgtcccta
      421 tttgttagag caagttcact ctggcatcaa ttaaatcatg aactgtcatc ttgattgctc
      481 tctttgttga gggacagcac atttccatct aaggatcagc tcagctttat atctctgcaa
      541 gacaattcat aattctgagc agcagaatga atgcacaaat tacattcttc aaccttttac
      601 tcccactaaa tctttccttt tttccacttt gctgagcctg aatattttat tcctccatca
      661 aatatgcatc ccattaatta agtta
//
LOCUS       KCLA01001429             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23255upu ultra-conserved element locus uce-1888,
            sequence.
ACCESSION   KCLA01001429
VERSION     KCLA01001429.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23255upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-1888"
BASE COUNT          314 a          171 c          149 g          276 t
ORIGIN      
        1 tgcctttcct tgctataccc ttagcatact gaaatcacag cgctgaaact cttcacataa
       61 tcataggatt aattgtacca ctagtttaca gttattttgc aaactggaaa tgattcattt
      121 aaactgtttg acttgcaaaa caggctgcaa tcagagaata ttgggatgca cttgtgaatg
      181 ggttggcagc cagaaaagca tggctgcaat catcataaat gagtaggttc ctcaaagcta
      241 gctatttctg aacaaaaccc ccctcacaac tacagttcat gctacatttc ctttttaagg
      301 gatagtttta gatgcaaatt aatttacaga ggtagatgag atgaaatgtt cagcagacac
      361 acctgactaa ctcgcatttt gtatctctaa cactcaaaag tacaatgctt atggtaatga
      421 attttatcta ttacaaggga aaacaatcac ctttgatgac attatagaat aaacacattt
      481 aacagcatgc tgaattgctg aagtatcatt ttcaacgacc tcattagtgt cacttaatta
      541 aaacttcctg ctcttgactt tgatgctggt gcaggcaaaa acacagaggg aattgaacaa
      601 acaacaaaaa aaggaggggt atcttctagt gataaatagc agtagttgct aatgaaacca
      661 aattatgtac ctttttcctg caactccgat aaaataatat gaaacgcaca gcaagtttgc
      721 atcaaacaaa ttaatcagct gtcagcagat tcgcctgata ataatctcct acccttattg
      781 ataatttaag aaaaaaagtt gtttttttct gtacacaatc attaggttgg tgataattaa
      841 agcttcagct tcagaaatgc cataataacc cttaattagc aggatgctat tttcaacata
      901 atttgctaat
//
LOCUS       KCLA01001430            1034 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23271upu ultra-conserved element locus uce-2620,
            sequence.
ACCESSION   KCLA01001430
VERSION     KCLA01001430.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23271upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1034
                     /note="ultra-conserved element locus uce-2620"
BASE COUNT          349 a          226 c          187 g          272 t
ORIGIN      
        1 agccccttta gaagtatcag ctgtaacaga tttcacagta cactcattta aaaaaaaatc
       61 agccctgagc ttaaaaaaaa atcagcaaat acatttacaa ttcagttatc agtatctgtt
      121 agcaaaatac atgccgagag caaatcagac aaacacagaa tatgctcaga tgtgaactat
      181 tcatcccaat taattgtcac tgtcttctgt gcttttttaa gaaccttgat ttaatacaga
      241 ggaagagagt gtgagcgaga acttggtgca ggataaaagg agtttcacac taaattcaga
      301 attggatcct aataaaaaca ccctattaat gccaaaacta gcaggtgaag ctttgacaaa
      361 gctgcagact agctttccat ggctactgct ctttgccttt cacacccacc tcatctacca
      421 gctggctcta tctcaaagga aagaccttaa attcctgcaa gcacactgca aggcacatgc
      481 agtagcagca gtgtactgac atttgctaag caccagcatc cctcaagtga ctgggagtga
      541 agccattgac gtcactgaac aataggcaaa atatttcctc ctcctccata gtcctgaact
      601 gtaaacagcc agcttgcaca cagcaggctg aacatttggg gagaggcgga gaaggagaat
      661 gtgaaaaact ctcaagtgat gctgctgaaa acaagcagct gttcctgcat aaccagcctc
      721 cttattcctt ccattttgct gtgaagattg ctggtgtccc cttagtgtag gtataaaaga
      781 taaagctaaa ataatctata aataaaattg tgtctactga actcacatgg aatttttgga
      841 agtaaaatgc ctaatactca ttataagaaa aaattccact ctctccctct ttctgcctct
      901 gttatggaca gctacattat tctaaccatt atctgtgtat tctgggaaag gtgtggtgca
      961 ctgaaggtca ccctcctcca catgcaagag aaagagaaaa aaaaacccat tcagaaatat
     1021 aattacaaaa ttag
//
LOCUS       KCLA01001431            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23286upu ultra-conserved element locus uce-6100,
            sequence.
ACCESSION   KCLA01001431
VERSION     KCLA01001431.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23286upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-6100"
BASE COUNT          267 a          352 c          217 g          338 t
ORIGIN      
        1 cgctgttgtg acttctgcac catcgacttc cactccccct acaccgcctc taaggcactc
       61 tgcaacacgt tttgctacat ctttaggctc agctttccac cctgttcttc cccattatgc
      121 tacggttcct cgtccactga acaaaagttc tcggcctcct tctcctgtca atgccccggc
      181 aactttgcct ccaaatacaa agcctgccgc ctggtccgca cccagttttg cccctcttcc
      241 cccgtctcct ccagtaatga taagcagtcc accaggcaaa gctactggtc caagacctct
      301 cctaccagtg tcagcttcaa atccagtgac ccaaatgtcc acgtctccta cggctcctaa
      361 tgggcttcct gaaaacctgg cttatccagt tccttcacct tctacctcag gtccaactcc
      421 gcctccacca cctcctcccc ccccgctgcc ttcctttccg cctttgtcac tctctggacc
      481 tcaagcttct ccttctccca actccccgaa tgcctcaact ccctcatcca agcctagtgt
      541 tctcccttct ccctctgcag ctacccctgc ctctgttgag aactctctaa actctgtgct
      601 gggagactcc tctgcttctg agccagtctt gcaggcagcc tctcagccga ttgaacctac
      661 gacccagcag ggtaaggctt tctgttattg ctactaatgc actaatcagg aacgcagttg
      721 aaaccagtgg gtatcaaccc ccctaactgt cccaatgaat taatacaatg cttccaaagt
      781 tgcagtgatc ttaatgccac aaggaaatat gttgggaaaa ctcgagtaag ggaaatgtta
      841 aaggtctgtg gataaaagcc agtgtgctgt ggcctgtcag gagtaaaata gtgatttcct
      901 aagctttcac ctgttcagaa cagggcttgt acttgcttgg taaatcttgc actgttggtt
      961 atttagaacc tcgtcttatt aagcagtatc attagtttcc taatggcagc cgacatggaa
     1021 gaatgagtgt gtggttttgg atatgtgaat gaccttaaat gagaaataat ctgaaaaact
     1081 ttgatactcc tatgtgatct cagatttagg tagtaatgta acatctacgg ccttcctttc
     1141 tgtacagtgt ttgtatgttg atataaggct ctat
//
LOCUS       KCLA01001432             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23301upu ultra-conserved element locus uce-4090,
            sequence.
ACCESSION   KCLA01001432
VERSION     KCLA01001432.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23301upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-4090"
BASE COUNT           93 a           57 c           60 g           90 t
ORIGIN      
        1 attagcattg ctctcaagct tctggttatc aaatccgaaa tattaagaca taataagtat
       61 gaaggtgcag ataattggat attaaccaga acatacttga ctgggcagga ggtaggtcct
      121 tgcttaaact aatcctggaa tgtattaatc accaattaat gaatgggttt caaattcatt
      181 ttctattagc caacacctct gagtatctga gcttttccta ataaaatgac ttggaataac
      241 aggataggta gaggaaacgc tccacgctgc ggctggcctg cattgattcc ctctagcttg
//
LOCUS       KCLA01001433             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23317upu ultra-conserved element locus uce-4208,
            sequence.
ACCESSION   KCLA01001433
VERSION     KCLA01001433.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23317upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-4208"
BASE COUNT          183 a           93 c          122 g          151 t
ORIGIN      
        1 tttacaattg tagtttgtta aacaaatgaa gcttatgctg caaaaccaga ttgatctaaa
       61 tttatgaaat ttacagatta cctaaaatgc taggagttaa ttacagtctg ctttccctaa
      121 catgtcagct tgattaaatt tggagttcca agatgaattg gcccaaattc attagtgttc
      181 cccgggtgca tatgttggtc aaggtcaagc gaagcacatt gactgtagtg ttagtcagga
      241 gggggaaggg tttctaaaga aggtggactc ttaaaaggtc tggggttgca gcaagaaact
      301 ttgatacttt ttaacttaat aaatcttgac agcctaatca tggctaagcc tttacagagt
      361 tattggtaca gatggcaaag ctagacatat ttaaagagat cccagcagct agtggcagga
      421 gagcattgaa tccaaatgca ccgttgggct ctcagagaaa gtgcaagaag ggaggataaa
      481 aagctacaca gcatttccat ctcttgacat ctccaacaga ctcagataca aaatatgata
      541 agggaaaag
//
LOCUS       KCLA01001434             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23333upu ultra-conserved element locus uce-6682,
            sequence.
ACCESSION   KCLA01001434
VERSION     KCLA01001434.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23333upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-6682"
BASE COUNT          267 a          174 c          191 g          215 t
ORIGIN      
        1 aaaagctctc gcagccacag gaaagctgct ccaactgatt ttctcttaaa acctgtatta
       61 cccaaacaca accctgtaat ttaatgacaa ccaagactaa cgtccacaag actctggaga
      121 aggatgcaat agttctcaaa gggttacacc accaatgtaa taccggcatc gtgttggtct
      181 gtcgcacgac tgtggcttta gttcactgaa atccactctg gagctttaca ccatgctttg
      241 gaaagggtgc tcctgacaga cccggggaag gcctggggca gtcggcttgg tacagcttgg
      301 gaaaggctat gcaggaaacc caaccgaaaa ccaaacaaac caatagaaag gttctgcttg
      361 aatatagtaa tgaatagaaa tgagtttaaa acatggagga cgtagtccag agcagctgta
      421 aaaaacacaa aatgaatgta ttattaaggc tgttactata ttgcagatat tttggcccct
      481 tgtttgttgg aaaacggctg tccgaacagt ctgaagtcct gcgtgtcatc caagtctccc
      541 acctgacgca agaagtaggg atataggact ttatccgtag cagacagaaa gcaatcctct
      601 ttggagacaa agctgttttg ggtcttctca ctttcctgaa agttctgttg tgggttgtca
      661 tgtttttcta aaaaaattca ctttcagcaa aatatttttc aaaggggaac aggccttaag
      721 ggaaacatgt agaaacactg gagattttct tcttcttcct taggtaatcc tggtagttta
      781 cagggcattg agcgtgcaga ggaaaggcct agaatcaaat gacaaagaaa gacaaaggac
      841 tgaagaa
//
LOCUS       KCLA01001435             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23348upu ultra-conserved element locus uce-1259,
            sequence.
ACCESSION   KCLA01001435
VERSION     KCLA01001435.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23348upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-1259"
BASE COUNT          316 a          192 c          181 g          291 t
ORIGIN      
        1 tcattaaaat cccggggatg ccagatataa gacatttcct gggactctta aaggtcattt
       61 gttgaacagt ttcttctaaa catatatgac aaattattcc cttggcaagg taggcaggac
      121 tcaagccctt taattataat atagcactca atatctttag acatttcaac atttcctatg
      181 tatcctacac atttcattac aaggaaaggt tgaacagaat taaaagcatg atgttacccc
      241 aagattgata gtttacctgt ccaaaaagaa aaagtcacag gacatgcgag tataaaggaa
      301 agaagaatcc aaagcaagtt ttgattgcag aggagacttg gataagacag tttttattat
      361 cggcagcttt tagccttatt taccatcagg ctatcttgcc acaagcatgc tttttagttc
      421 tgacagctct gaattatgac cattgtggga tcctatctca ttaactgaaa tgggagaata
      481 aaacatcaaa caatcataaa aataatttgg cactgtgaaa ccacttagga ccagctgtca
      541 aacaggttgg aagataaagt tctaaataaa aagaatagag agagctgcaa tgtcctgcca
      601 tatgcttcct ctgcattata gactcctcaa taatatgaag tgcctgtgtt tatgcagaat
      661 aggccagaca ctccatatat gatattgatt atgccttaac cccaatttag taaagacata
      721 ctcctccttt tcctaatcag atattgcaga agcagttttc tgaaaatgtc cctaatgcca
      781 agacatattt tatctccgaa ggctgtggca ggagataggg ctttgtctag cctgttgtca
      841 tggcttggag cccagtttta ggacagcgag gcccctgtgg ggctcttctc tagcagtttt
      901 catccagcaa ttcaaaaaca tacatcttta tcaagctgtt gttgtcagac aacattagat
      961 aattaatagg ccatttgtca
//
LOCUS       KCLA01001436             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23364upu ultra-conserved element locus uce-3731,
            sequence.
ACCESSION   KCLA01001436
VERSION     KCLA01001436.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23364upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-3731"
BASE COUNT          211 a          110 c          135 g          220 t
ORIGIN      
        1 tttcaaagtg ggggagactg gctagaaggg ggaaaaagag catgatttgc tgttaaaata
       61 taatggtctc ctttagctga cacagcatgt agagtgtttt gtgcctttga ttgaaataac
      121 attttaaatg ctttgaacaa acatatctcc ccatacttct aagggattat tttacatatt
      181 tcttggtgga ataaagaaat tcattcttcc tgtcgcagta cagaaaggct aagaatatct
      241 ttcgtcacat ataaagtaaa aatactgtag gctgttgcat tattaccaaa aaaataaaaa
      301 aataaaggga gggggtggtg gggtgggaga aagctgcctt agagattaag tttccctttt
      361 atgaaatcgt atttagtctc tttttttaac aaatctaaca acaatgctct acagccgctc
      421 actgggaaat acctttaatg ttaaatgcag attctgattt tcttggctaa tgcagaaagc
      481 ctttctattg aaatataaat aaggggtttg gtatatccca ctaaagcctt tccagtgaat
      541 gacttctgtg ggtttttcat ggctaccctc catggctgta atgtgaggct tttatcctac
      601 tattgaaaac tatccacagc tattaaaaaa aatatggaag gacactgcac ctttttatct
      661 tggagctggg ctttta
//
LOCUS       KCLA01001437             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23380upu ultra-conserved element locus uce-4482,
            sequence.
ACCESSION   KCLA01001437
VERSION     KCLA01001437.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23380upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-4482"
BASE COUNT          194 a          141 c          121 g          154 t
ORIGIN      
        1 aggtgctcac aggccaggcc tgaacccgtg acagcggact gctctgagct cctgacagca
       61 actcaaccgg cgaagtcgcc tcagcttcca gcccaaaagt ttactcaagt taagaaaaca
      121 cagcctccga ttgaacagag tgccgcacca ctgtcaattt tcagacgtag ccatcaggaa
      181 aaaaaattac attccaggct gacgagcgac taatcaaggc aagtgaaacg gggccgcaat
      241 aaattactcc tcagcgaaat aaaccacaca aacagaccga tgataataaa tgtaaattat
      301 ttctctgaag aaattttctt ggtatatgag taatacgaac catcaggaag gagtcttcct
      361 taacattaat tacagaaaat gacaagtgag ctgatgactg cgaaggctca ttatctgaga
      421 acatattcac aactttgcaa tttgcgcgag atgtactcgg gctaaattaa tctcccttct
      481 ttgcatgagc ctcttctaat tttcatgtta ttaacaggtt tgcagtatca ctcagtgctt
      541 gtcactctaa tcaggtttcg gcatgttcgc aaaagcgaag tgtcatttat aaggataagc
      601 cctcataatg
//
LOCUS       KCLA01001438             277 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23395upu ultra-conserved element locus uce-5625,
            sequence.
ACCESSION   KCLA01001438
VERSION     KCLA01001438.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 277)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 277)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23395upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>277
                     /note="ultra-conserved element locus uce-5625"
BASE COUNT          100 a           33 c           58 g           86 t
ORIGIN      
        1 gggatggtgt gtctttaatt ttgtttagaa cagaaaataa ctgtgatatg aaaggtttaa
       61 tgaggttaga aatctaaaag gaaatggagt gggaatagat tatcaagaga aataaagcca
      121 accgttggag agtacactaa tattaaatat taggtttcta aaccaaatat atataatcca
      181 tttagggact taatggtggt tctcagaagc acatttatct acagcttatg gttcaacaac
      241 caatattata actccatttg tcattgttgg gcaaggg
//
LOCUS       KCLA01001439             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23410upu ultra-conserved element locus uce-4599,
            sequence.
ACCESSION   KCLA01001439
VERSION     KCLA01001439.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23410upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-4599"
BASE COUNT          287 a          167 c          143 g          297 t
ORIGIN      
        1 aataaaaact tgaataagac tccgattaag gaaatactca tgaaaaacct tcaaaaagta
       61 taaaagttct attaattgtc atttaaatat tgtcaatcaa atctgtttgc atctggtacc
      121 agtgccatgt gaaatttgtt taaactttca gtcacacatg gaaagttttg cagatggtgt
      181 ttcttctcat ctgttttttc caatttcccc cccaagctcc agttctgact ttctcgaccc
      241 cccaatttga ttcctcctcc ttctaagaaa atagatctaa tcagtagcat gttaaacaag
      301 aggggatctt ttatgtattc tgtgttagga caagaaaagc atcactgtag atcactagaa
      361 taaacaactc aggctgattc aattacaatg cctgggccag gcttttatct gctagtgaca
      421 tcatttcaat caaaatgtaa aataatacaa tccaatagat gcaagaggaa gagataggac
      481 acagactgct gcacttagtc atttaataaa aaaaagtgga agaaagctct ttctgacagg
      541 ctgcaaggac ttccatttcc aaacctctat taccttgtat aatagtattc aaaagaattg
      601 aatgcaggaa attgtctatt actttttatt agtagaagct gttatgtagg atacagccta
      661 ctgcactgtt tttcctttgt tctgttaatt aacaaaagca tgaaatcctt ctattggcaa
      721 gatcttattc caaggattct gctgccttct gtttttactg aaaagatgat ttttcccctt
      781 tcttttcact gaatgtcttt ttttatactc aaaaagtaat tttttcccaa gtcactgtaa
      841 tctaaagtct atcagtcact ctaatgggtt aggagagggt agaatgcaga taca
//
LOCUS       KCLA01001440            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23426upu ultra-conserved element locus uce-2980,
            sequence.
ACCESSION   KCLA01001440
VERSION     KCLA01001440.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23426upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-2980"
BASE COUNT          345 a          210 c          222 g          296 t
ORIGIN      
        1 gaagacatca gatggatcct gtgactacat gaaagaaaca tatctatata aatatagata
       61 tattctttaa cagaggcatt ctgttctcta atatgctcga tcaccacttg tgccaaagca
      121 acctgtcatc tgatggaaaa ctgctcgtat taggctagtg ggcacatggc tattgttttc
      181 agaagtggag ctgctcagag taggcatttt ccaacaatga catgtgatca ttgcagcatt
      241 aaaacacctc catcacaaac ttctgaaaac tgaaacaaaa cgagaaataa aaccagaaaa
      301 cacaaggcaa gctagaacct acagcttctc tacttcagtg gacattcagt acaatttgag
      361 ttgtgagtaa cacagctact aagacccagc taccttatgc tccaggctgg agtctttaaa
      421 catcagtgaa aaaggcttga tatgctctct tctcaattta tcgccactcc gtaagtcgat
      481 ggtgtgctct attcgcttgt taatttcctc aggcccagac tggacatgca aagcttgtgc
      541 aagatggttt ggaagcagat ttattgaatt tcttgttagg gcagccagag tctaggggaa
      601 agcacatgca aacagaataa acctgctgat cccctcgggt taaaaatgca atgttttaga
      661 tcatgttgca ttgcaaacca ttacagcatt ccatgcaatt cattcaatga aatctacaga
      721 agtgtaaaat aagaagtctg ttccactaaa cacatacagt acattaaggg gagtacttta
      781 atggactctt ttgtgcagac tgggaggtta actcctccac tgaatgttag gattctattt
      841 ccttttccaa atcctgctaa ttaaatagag catgcatgat gggagcacac accagggtgt
      901 ctaactcagt ggtgtgtttt agcaactaag aacagaagct acggaaaaca gaagtcagga
      961 aacagaagta atgatgtctt gatcttaaag ttactggatg tgtgtagtca aggaacagat
     1021 cagttaggca ggagtgaaga aagtgacgtt gctgaatact tcagcatgtt ttt
//
LOCUS       KCLA01001441             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23440upu ultra-conserved element locus uce-3083,
            sequence.
ACCESSION   KCLA01001441
VERSION     KCLA01001441.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23440upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-3083"
BASE COUNT          210 a          104 c          130 g          233 t
ORIGIN      
        1 acatagtctt ccttttacat tgtacatatt aagctgccga tgtttgtcta cagcaaaaga
       61 ctgcagttct cctgactgta atttgtaact gaacagttta caaataaagt tgaactacac
      121 aagaattttc ttcaggcttt gggggattat taaatgacat tgtcaactcc tggaggataa
      181 catgttttac agttaaagtg agaatttctc cctgttgaaa attgcctgtt gtttttatta
      241 ttgtaagaac tggtctgctg aacttagcac agcctttgag atctcagtga gaatcctgtg
      301 attaatgagg tagccattaa tgtcagtaga ttgaacaact gaaatctgat tatattaaag
      361 tgcttcccaa acattagggt cacattaaca gtttattgaa acaagctgat aaaatttaaa
      421 atggtcatct aattccctag ggttcctaat tgttgcatga taaatcactg tgtagagaaa
      481 tctattacaa tgttcaaatg agaaaatgta atttgctgta tcattagcgg ggcgtttgga
      541 gcacatcagt tgtttcttgg ggggttttgc cgaaataaga caaaactctg tatatgaagt
      601 ttttctttcc ttttagatga atacaatgct tatgctttga gctgcaaaat tatgtaggaa
      661 aaatgagtca tttcatg
//
LOCUS       KCLA01001442             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23469upu ultra-conserved element locus uce-6088,
            sequence.
ACCESSION   KCLA01001442
VERSION     KCLA01001442.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23469upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-6088"
BASE COUNT          133 a          123 c          141 g          207 t
ORIGIN      
        1 ccctcccctc tttcctttct ctctctctct ctgggtaaat agctaattcc tttgttcctt
       61 gctgcactat ttcatttctg ccatcattgt cctcattgtt atctgaaaca ggaggggtct
      121 gggccaggag cagccaaggt cttggctaat gacgggaagt ctttaaagtt tgcgctgcat
      181 ttcatcttct ctgtgggagt tttaggacgc atccagtgtt tgatccccac cgtgcaactt
      241 tgcttctagt taattaacag atccccatta cactctctca tctgcaagca catgggaggc
      301 ctatcaggag gtaattcaag gccaatctga gtgatggcag aaattagaga aaacggttgt
      361 tttagggttc taatgttcag gaataaagct ctccctttgc agaggtgccc tgtaaatttg
      421 tgcttgtttt gttgtataat tttaagtttt taagtgatct cctttgcaat cagctttggt
      481 ttgggggatt tttttaggaa gcgtagatgg gaaggcagtt tatttgctat gctggcagcc
      541 cgtgtgacgt acggttttga gggccagttg aaatgaaacc acagtgttat tagcaagatg
      601 tttt
//
LOCUS       KCLA01001443             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23483upu ultra-conserved element locus uce-4259,
            sequence.
ACCESSION   KCLA01001443
VERSION     KCLA01001443.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23483upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-4259"
BASE COUNT          171 a          129 c           98 g          158 t
ORIGIN      
        1 tatttttaat tttttttaca gtgtacaatt tagctaataa caggttcggg ccaatcttta
       61 acaagtcaaa tatttccatt gtcccttcac cccctgctta tgcttttacc acatcctaac
      121 aaaaacatga ccagaactgg tgaaaaacat acggttccaa ctaatgaatc acatactttc
      181 ccgcaagttc agtaagtact accagctgtg acagtcttgc tttggcaatg gaaccagtgc
      241 agaacaaggc caacacatct gaaaccagct gtactgaaaa accacaagca atttaagtcc
      301 atctgccttc tcaggggctt ctttgtctct gtctgtgtct cagctctgtc cctaaaactt
      361 gccagccatc ttgttttgac agagctcaga gtttcagaag tttcaagggg gaaaaaatct
      421 gctgattcag gaaactaggt ttcaagaaaa tgataaggac gtctttgtca acccagtttg
      481 agtcaggaaa tttgaagaga cagagcatgc atctacccat ctgctctgct catatgacag
      541 cttaaagcac taaaaa
//
LOCUS       KCLA01001444             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23499upu ultra-conserved element locus uce-3668,
            sequence.
ACCESSION   KCLA01001444
VERSION     KCLA01001444.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23499upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-3668"
BASE COUNT          232 a          117 c          162 g          246 t
ORIGIN      
        1 agaagggggt taaaaaaaga agcaagtctg ttactaaagg attttaagat acagtggaga
       61 tgtgaaaggc acagaagatt ttcatttcct gtgttatagg gtgcaaataa tatcagtatg
      121 aaaaacctgg caggaagatt taagatagca gtttttacat tgataagtat ttgttcattt
      181 cctgacaaca aaaaatataa atctcttcag aaattaaata ccctggcttg ttgaagcact
      241 tttgtgacgt tctgtggtag actggcttcc tttcattgga aatccacagc cagaataata
      301 atcacagcat cagttattat acttgtatca gttctgtgcg gcaagaggct aatacagtgt
      361 atggccgaat tctcctactt ttgtgtcact tattttctct gtgggccaga tttgcatttt
      421 aatggaagta gtttatagac ttctttgctg ccttcatagt gccacaagtg gcatcattaa
      481 gtgagttaag ccggattaat gctgatagta aagtcagata atacaataac agagggcttc
      541 atttccattt ggattaggtg aagagagcag gcctgtctgg tgcagggtga taatttgtaa
      601 gcgcgatatg ttgtacttga gaggataaga ttaaatttag tgggtttaac tgtcatccca
      661 gtaagtcaat tacttcatct tttcaggctt tgaatttatt ttataaataa aataaatgga
      721 atattgagct gctccgcagc caattcgagc ttccatg
//
LOCUS       KCLA01001445             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23514upu ultra-conserved element locus uce-7495,
            sequence.
ACCESSION   KCLA01001445
VERSION     KCLA01001445.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-7495"
BASE COUNT          247 a          142 c          151 g          267 t
ORIGIN      
        1 aaggacaatg aatttttgct tcagcagttt ccacccttag cctacgtttt ggcaggtctt
       61 tgttgtaagc acgtctctcc tatttatctc actctttcac taaatgcatt tacaattgtg
      121 acttggctta tggatgtttg ctctcggtgt tagcgtaatg tccatacatc taattgataa
      181 gttataatgc gttttttgta cctttaacca gccattgaga ataaataaga tcataattat
      241 cagtttccat ttacccattt attaaataac aatgttcaca ctgcgcagtt tgattttgtg
      301 ttacaataag gcagcctcta catgatgaca gatggtgttt cattttgccg gcgctgtgct
      361 aaagtgctgt gagttgtgat gtgtttgatt ttattagaga tcagatttaa cacatgcatg
      421 ctacataact gcaatagcat tcccatttct catctgtagg agaaaatgaa actgtgatga
      481 aatgtaatat actcaccctc aggcagaact agtgggattg ggaattgcga cataataaat
      541 ctaatggata ttgcactaca ggacactaga aatttactgt tattatgttc agggaaggaa
      601 cttggttttg taaaactcac ttttatttca ctggcatcgg tgcaatttca cattatttaa
      661 ccattatata ccaacagttt gctgcattga aaaagtaacc taggctcaga ggaatagagg
      721 agtaaaagaa cccaaaaggg aaaacatgaa tcctgaataa atgactgaaa ttgttaaatg
      781 ccgcctgagc aaaccgttta tagttaa
//
LOCUS       KCLA01001446             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23529upu ultra-conserved element locus uce-6699,
            sequence.
ACCESSION   KCLA01001446
VERSION     KCLA01001446.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23529upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-6699"
BASE COUNT          182 a          108 c          127 g          181 t
ORIGIN      
        1 agttgcttat gtaagtgtaa atcactgatt ttgtagcagt aaatcctccc attatttcat
       61 ggctatccag accttgtggc acagtatgtc ctgtgctgtt gtatgtgtga gaaggctttt
      121 tatggagagc aatcagactg gatcccaatc tccagtgtag tttttatcta attaaattgt
      181 cactggaagg gatatctgga acagcaatct tcattttcag tcaaggttgt atgtctttgt
      241 cacttgatta aaagttattt aaccttcaga ttgctacaga tgtaaagata gctctgagtt
      301 tccaatgtaa tcacctccaa attaaaataa ggaaaatctt ggtgtaatga aacccatatg
      361 tcatggcaaa aggatgcaaa acactggcag agagggatac tctagcagga gattctgcac
      421 ccaatcttgt taaacaggac tgctttaggt aatccctcat ctcctcactt ggaggaaatc
      481 aatctgtact actgaatctt tcaaaattta ctgcagagag gcaacttagg gacaactgta
      541 gtagaaaagg agccctaggc aacaaggcta aatgcaggat tgagggattg gtgttcta
//
LOCUS       KCLA01001447             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23558upu ultra-conserved element locus uce-6048,
            sequence.
ACCESSION   KCLA01001447
VERSION     KCLA01001447.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23558upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-6048"
BASE COUNT          230 a          105 c          134 g          266 t
ORIGIN      
        1 aaacaagtaa ggacatcata ctgagcagta aacatacaag attatgcatg agtttgaagt
       61 tagaaaatgt ctattagaag tctagttcag cttttgttgg gtcctgaaag aaagaaatat
      121 taagcataat gaaataacaa aggtgtctgt aataaggttg tgtcatagat ggttatgttt
      181 gttcattttt taatattgtt tggatgttcc taatgattcc attagacttt aaataacaaa
      241 attgagcaca aatgtatttg tattgagcag ctgaagcata atttctctgg aactggagct
      301 gctgtagttg aagattagcc tttactatcc cttagggaga ttactatctc cgccagctga
      361 cttagttttt atatagcaaa caatttgtta gattgctttg ctcttaagtg taataaaaag
      421 ccttatgctt aggaaggttt agagacatcc agtgcattaa catttatgac aatgacagat
      481 acattttgct tacctaacaa gaaaagccaa gttacacctg atgtgtattg gagattacat
      541 ttgactggta ggaattctgc caattatgtc tgtaattctt tgctattact tttatagttg
      601 tcatccaata acttacatat tcaaatagta ctttttttgt gacctaagca tttgtagaaa
      661 accttttctt tgtacctgtg ctactgagtg tctaggtatt ggcatatttt ctttggatat
      721 taaatcgtca atatt
//
LOCUS       KCLA01001448             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23574upu ultra-conserved element locus uce-4566,
            sequence.
ACCESSION   KCLA01001448
VERSION     KCLA01001448.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23574upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-4566"
BASE COUNT          235 a          149 c          200 g          245 t
ORIGIN      
        1 gcataatgac taaaaactca taaaggttct agaaatgaac caagagaaaa ggatttaacc
       61 tccttcaggg taatggagag gataaggtgc aataatacag aggcaatgca catggataac
      121 tgtacctaaa taaacagagg tacagataga ggatagctgg aagcttcagc ttgtagaagt
      181 agaaggactg acagagttgt cgttgcctgc ttttaccact tggcactgag ctcagctatt
      241 aaggcaaact ctgttgctgt atccattcgt ggtcttggtt tgatttacca ccattgcagc
      301 aatttcaagc tggtgaggag ttgtaatcaa gtgtttctgt tcttacttca caggccggac
      361 ctgatagaca tgaataccgt tgctgttcaa agcaaccttg caaatttaga gcatgctttt
      421 tttgtagcag aaaaacttgg cgttgctaga cttctggatc ctgaaggtaa ggtagctgtg
      481 aagggctttg ttgcctgaat attaaaacaa aatccaagct gcatgcaagt ggtagcatgt
      541 ttgtgggttt tcttgcaacc gtgtgatgaa gcactgttct gtttaccctt atagatgttg
      601 atgtttcctc acctgatgag aagtcagtaa taacttatgt gtcatcgctt tacgatgcat
      661 ttcccaaagt accagaaggt ggtgaaggca tcggtgcaaa tgtgagtagg agaaagacac
      721 ctgtgcagtg tgtggacttc attaatacag tcctaggatc ttctgtaggg ttcctgtcac
      781 acttagtctg acatgattct caagggtgag atttatttgc ttagcagct
//
LOCUS       KCLA01001449             527 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23588upu ultra-conserved element locus uce-4513,
            sequence.
ACCESSION   KCLA01001449
VERSION     KCLA01001449.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 527)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..527
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23588upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>527
                     /note="ultra-conserved element locus uce-4513"
BASE COUNT          172 a           88 c           98 g          169 t
ORIGIN      
        1 tatatgcatg tgtcaacaat taatatatgg caaactcaac caacagtttt aagagatcct
       61 aaaatataac aaaatcaata aatgatgttc tggcataaat gtttctgtag ctgagggtgg
      121 tcaggtccaa agggcaacgt ctgaccattt ctctttccca ccctgctgcg gagtaagacc
      181 ctcctctcaa cttcaaatca ctggggagag ggtaatttaa gctatacttg atgtacccta
      241 tacatcactg tcttcaggac caggtttaaa attaaactct gatgtacaaa gttaaacaaa
      301 aatgagataa aaattggcag gggttgaaga gggtcaaagt agtcaaaaca caaggtagac
      361 tattgcttct tttgatttat gttattctgg gcactaaaaa aataaaatta tagttctcat
      421 ggagactttt ttcattgaga acaatgcatt cctaatttgt tttctatgga ctttacaggg
      481 tatttgttct gggagataga agcatgcatt catttattta tttattt
//
LOCUS       KCLA01001450             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23604upu ultra-conserved element locus uce-777,
            sequence.
ACCESSION   KCLA01001450
VERSION     KCLA01001450.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-777"
BASE COUNT          235 a          115 c          142 g          179 t
ORIGIN      
        1 taaatggtga aaagttaaag acaaaaacaa cccggaatct tttaaaagat gagaaaccta
       61 tttgcagttt caaaaactag gtagaagaat gcttttgtca tagatttcat gcagcagttg
      121 gcattggcag tactgcaaaa agagatgtat tctgtcgtgc tctgtttgat caagtgctaa
      181 agccgtgtga tcaatagaga gacagatgtc gggtgcagat ggcgatgccg tgatacctgg
      241 ggcagagtgg gcctgccaga atgacagaat gggaacaagg aagagcagca atgcaacaga
      301 atgtgacaaa tgaaattagg gtttatacta gtcgataatt tacagctaat agaaagtgac
      361 agaatttttc agcatacagc acatttactc tcgtaacact atagtcaatg catttttcat
      421 gcaaaacaat aggagctgct atgaagaccg ggctccagct atatgtgttt tgttacagca
      481 caacttgtac aattgatttt taaacaaagc cagtaacatc aaatttcaag taagcaccaa
      541 gtatttgaaa caagattgta ttttcaacct tgaaacgcgt ccatctgata ctcggattgt
      601 gtagcagacc tctaacaaga gaacgaagac attattacct gtttatatga atataaacta
      661 gagattcacc a
//
LOCUS       KCLA01001451            1027 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23620upu ultra-conserved element locus uce-1904,
            sequence.
ACCESSION   KCLA01001451
VERSION     KCLA01001451.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23620upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1027
                     /note="ultra-conserved element locus uce-1904"
BASE COUNT          331 a          170 c          203 g          323 t
ORIGIN      
        1 atgtaaaaac acttacagta agttttgatc tcagacatta ttttaattca ttaaagaaac
       61 tgaagtaatt atgttttaaa agaaacgtgc ataagcacat tacaagttta agtacacata
      121 ctagattcac ttgcaatagc ttttcaagaa ggcaggtagg atttaactgg gtgttgtgtt
      181 cttttaaagc acttcatttc tgttcttatg atatgctcaa aattcttagt ggctcttctg
      241 tttgtgacag gagtttacgg cattagtttc accaggcaag gactggtgga gtaaaattag
      301 tcatgtatgt aaattataat catgctgaat agttgtatgt gctcatttag gcattttaac
      361 agtgtgtgat gttatcatct ctgcaggact aataagcatt agccataatg aggtcagtca
      421 gtcagtcagg cattatcatg ggatttaatt gggacactgg tctctgctga agtgaaaatt
      481 aataactttt gtcaatgttc tggcgaaatg ttctgtctta ttaaactatg agggtcaatt
      541 agaaagcatt atgtaataaa gtccccagca gcagaactca aattgagtta taccacagtc
      601 attattccag gacgattgca tttgaaaatg gaaaaccaga gtgccatatg gagggcgcag
      661 gttatattta caagcatcgc atgttaaagc ttcggcaaga aggaaacaat taaatgttat
      721 actaaaataa atcaaagcgc tgaaagtgcc atgttgttcc aggctcttaa tatagccagc
      781 atacccctag atacaactag acaaaatggc acctgtttat aagccttgtt tgagtcctgt
      841 cagacagtgt cctccctctg gattgctcca atgattcaaa atctggggca cacctggaag
      901 gctcagccag gcatgttgac tcatataaat aacagtttat tgtatggcta ttaagaccag
      961 aggttgcttt tattaaagtg cagttatcat gatacaacaa attaaagaac ttttaaagca
     1021 tgtttaa
//
LOCUS       KCLA01001452            1072 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23635upu ultra-conserved element locus uce-7576,
            sequence.
ACCESSION   KCLA01001452
VERSION     KCLA01001452.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23635upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1072
                     /note="ultra-conserved element locus uce-7576"
BASE COUNT          335 a          220 c          201 g          316 t
ORIGIN      
        1 aaaaaagcta gcaattgctt acaaaccact gctcacttct tttaagatgc acccattttc
       61 attgataaga tggaagcagg cagtatggtt taagttatca cccagtaatt tagtcacatt
      121 aaacccaatt ctctgccttt tgtttattaa tccgctatgc cagatatcac agtttcactc
      181 agcaagcctc acgtttcgga tgatattgaa aaatggctcg tgtttgtcaa agaaagtaaa
      241 aagaaaagaa aaaaaaagag agagagagag aggaaaaagt gttgtttata gaagccagct
      301 gctctggctt tggcgccagc agctcttcat cctgctattt tacgctcgca acccccactg
      361 cccccactgg cacaggtaca actaaatgtt gacttcaatg cttcagagag cactcaactg
      421 attctgtaca tgattaattg ccaaagacat ggctgaccat atggaacaaa gaaagcatca
      481 agtaattcat acttctgtat acgatcattt ggcccctgtt gttttaatgt acaggaaaga
      541 gctagtatag cacagacctg gtgtcttgcc cttgacagcc cattaagaaa tctcaaagca
      601 cctagttgaa gttacgctgt tggcttttca atagcagcct aataaaacag aagcaaagct
      661 ttccaactag tcttaaatct ttcacataca gtacattaac cactgctgct aaaacaactg
      721 gtttcttatg ataggaaatg ggatttgatt tctagcctct gcatagttac tgaaagcctt
      781 tttctgacct ttggagggtt tacaaaatca ttgttcgctt ttcctgtcat tttcccagtt
      841 tcttgccatg gtgatcctaa tagatttgtt taaggttcag tacattctaa tcttactagc
      901 tgttatatgc aaactgtacg gtgaaggtag gctcgtggga gctgagagga aagaaatgat
      961 tattaactgt tttcttcctg agagtcagag aaggcactgt aacatctttt aaagagccca
     1021 taaaacaaaa caaaaaattc ctgaaaagca gcaatatact tgcatgcgct tt
//
LOCUS       KCLA01001453             918 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23650upu ultra-conserved element locus uce-7370,
            sequence.
ACCESSION   KCLA01001453
VERSION     KCLA01001453.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23650upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>918
                     /note="ultra-conserved element locus uce-7370"
BASE COUNT          284 a          187 c          151 g          296 t
ORIGIN      
        1 gaggggaagg caggggaagt attcatcccc taaaaacagc ttaatcaagt tctgctgagc
       61 cagagagcct aagcacacag actgcttagc actcccaaat tgtgctggcc aagtacacag
      121 ttcagatgtg gatggaggtc tctttccaag agctgaaagc ttgcatttgt gtgtccagtt
      181 caagttttct cacaaatttg aacaaaaagc ttgtaaagtt cagcatcttc caaattgccc
      241 catataagtc cctactgaaa ccatatccaa atggcttccc tcccaccata ctttccacag
      301 aaatgaccta aactttgtca ggttcacatg tccctagaga tgatctcatt tcactgcttc
      361 aaaagagctt tggtctgcac agcctgtagc agcaaattta cacttcaaaa agcagacagc
      421 tttttccaca tcttattcac ttaatgggtg agaatgtaaa attagttccg ttgctgatga
      481 ggaccttgag ccaaatgaaa agtgttcatt tgtcagcaca gacttacagc ctgaaacatg
      541 attatatagc taatccaata atggggtttg atgctgagca tttatttata tacagtatgt
      601 cttgctatct gttgataatc aggctgttca atttactttt ttgtaccaat agacagagta
      661 acatcttcag acatattaca tttgtgtgtc aatatgcaaa cacacacaaa acctttctga
      721 ccaaaatact cttgcctatt tgccttgaat ttgagttttt tgtaatttaa aatattagta
      781 gcaaattaat aattttagac tacgatcttc tcgatacctt agaagtctta ataaattaac
      841 atttaaaaca gaaattttgt ttccttatct tcaacaccgt atgaataatt atcttttttt
      901 ttttcctgat gtgaatac
//
LOCUS       KCLA01001454             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23665upu ultra-conserved element locus uce-4609,
            sequence.
ACCESSION   KCLA01001454
VERSION     KCLA01001454.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23665upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-4609"
BASE COUNT           82 a           69 c           60 g           64 t
ORIGIN      
        1 ggtcatggga aaacaaaaca ccccgactgg agccattatt aattcaacga atccagctgc
       61 tcacagtgct ctgggcagaa ggcaaagtta aaagcagctg ctggctgacg acatgtgcga
      121 actgaccgga cgaaggtagc tgttttagca catcatccag cactttgaag gctgactgca
      181 ctcaatttct tagacaatct acacaccatt ttcagtcctg ttcctccata atttatcaca
      241 acaatacctc aagcatacag atggggttgg ggcag
//
LOCUS       KCLA01001455            1252 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23681upu ultra-conserved element locus uce-1278,
            sequence.
ACCESSION   KCLA01001455
VERSION     KCLA01001455.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1252)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1252)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1252
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23681upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1252
                     /note="ultra-conserved element locus uce-1278"
BASE COUNT          354 a          229 c          246 g          423 t
ORIGIN      
        1 atccagacaa gcctaatcat tgcaattaaa aggaacagaa aggatgcatg agaatatgcc
       61 atgtatgttc ccttgaatgc agctactcat ttgtttaata gacaaattta gcatatggga
      121 ggagggagga aattctaatt tagtctccca aggaccacac cttaccttac atatcctctg
      181 tgattatcag aatgcttctt caaaattatt aactgtgcag caagggttag aaatcacaga
      241 ggtatttctt tctgcatttg aattgaaaag tgctgaaaca gtgaatactg tcagataagt
      301 aaaaatcatt tgtgctttgt tgtttttcct tttgtgtctc cttaatgctt tattgtggtc
      361 ctaagtccct tttagcattt gcataaagtt cagatagatc cctctttaat gacgtgctga
      421 tcattagata cctgtgtgtc aataacatgc tctgatgcta tgttccattg acagtcacac
      481 cgtgcccctc catctgcttt tgttttgacc ctatctttga actttatctt ggttgctggc
      541 cagtagtttt ccctttaatt acaagaagga aactgtcaat aaaatctgtt aaatgggatg
      601 caatgagtgg cttgaatggg cggatggcta tttgttcaaa ttctgcagca ttcaaggtat
      661 tgacagtttg ttttctgggg ccatatgtga cgatcaatct caggctgggc tcagccgcgc
      721 tgaaaaatga aaaaccagat tgcttttgct tacttgtgga tgacgacttg tgatttggcg
      781 cggtcctagt gagatgagac cttctgccca aattgccccc ctgagagcca ggacgcgtga
      841 ctgtttttag aaataatttt ttaattgatt ttgtaattaa cagttcatct acaatattga
      901 tgcatgaatc ctcagattga taggagggaa attgttttca acaatgaagt tgtactttcc
      961 tatttatctt tgtaatgtga tttagcactc tgcattttta attggaaata taatttaaaa
     1021 acatgcaaag ccaaaatgct tattagttta tttgtaaaat attctccacc ccacaaagtc
     1081 tgcccttagt tttagagtat tctctgattt ccaggataag cgagctgctg aaatgcctcc
     1141 tgcagatcac aatgattggt aattgaagat ttatttataa tttttgactg gtgtaaacag
     1201 acacctgaag gagctctgca gccacaaagg atttttctca gaactggtca tg
//
LOCUS       KCLA01001456             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23697upu ultra-conserved element locus uce-362,
            sequence.
ACCESSION   KCLA01001456
VERSION     KCLA01001456.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-362"
BASE COUNT          148 a           71 c           78 g          153 t
ORIGIN      
        1 aaaaaaaaat cagcaaaatg aaacaaattg ctcataaatc acattaataa gtggagtttt
       61 aactatctgt agcatgtaga atattaacat ctgatgtgcc tatgaatagt cattcctact
      121 agtatacatt aaatgttgta attggtttaa atcagcatgg gccatctgtc tttaatactc
      181 ttattacaag gcagtaagca gagaactatt agagctgcag tataagctgt aagatcttta
      241 cccgttctta aatcatttaa aaataatgag agctttagcc tttatctaat taacgagtgc
      301 cttctttgaa ttagaaaaac tgtatcattt agcccacggt tgtttagtaa attggcttgg
      361 tggcatgtaa gctaatgcag ggtagcagtt gcagtgtctt gttcctggct tcttattact
      421 tgaattataa ttcaatgatc accttagatc
//
LOCUS       KCLA01001457             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23713upu ultra-conserved element locus uce-5296,
            sequence.
ACCESSION   KCLA01001457
VERSION     KCLA01001457.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23713upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-5296"
BASE COUNT          301 a          139 c          181 g          270 t
ORIGIN      
        1 acaatatgct taatgcagaa taaaccacat ttcatgaaaa gaggtcatct ttggggggag
       61 ggagagaaac aattgaaaag aaaaaatgta gcgcaggagg gaattaggag ggtttttttt
      121 ttcttatgga aagtatttac atgtttattt taagcctaac ataaatgtaa atattttaaa
      181 caaacaaaaa cacactaggg gtaacaatag agtattgttt tttttatgtt gaataaaaac
      241 tgccaggaca gtgcatgtat atttttaaac atgctgcttc aaaaagcagg atgcaaggga
      301 tgttgcatct ttaatttttc tgttaattat ggattgagca ttgttgtgag tcttgtcctc
      361 aaaacccagc tcagaaaata agagcagatg ctcgtaccca ggtttggctc atgtgggaat
      421 tgaacagaac atattggttt ataattaatg taatttgttg gattatcttt tgtgaaggag
      481 ctaaggtaaa caaccttgca gcgttgtagt gaaattcttc ggcactcgga gtctatgtac
      541 ttgatggagg atgacaaaaa agctaccctt cctcctggat tgcaggaaga tttggaaatg
      601 tctgtcacat tcaagcatat tttaattatc tcaaaggaaa gaattaggct acagacccta
      661 aagcaaatta caaatagtgt ttaaaaccag agctaatgat tccccaattg actattctga
      721 ttaacagaat tctcttttct agtttgctgt aattttgtta tggggcaaag acagaggaag
      781 aacaagcctt tctgccctgg aaaaagtagc tgttcttcag atcaaattta ccacttcaaa
      841 ctccactggc cacagagtac aaatacaagc atggcaataa gtggcaactt a
//
LOCUS       KCLA01001458            1110 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23727upu ultra-conserved element locus uce-783,
            sequence.
ACCESSION   KCLA01001458
VERSION     KCLA01001458.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23727upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1110
                     /note="ultra-conserved element locus uce-783"
BASE COUNT          331 a          210 c          232 g          337 t
ORIGIN      
        1 tgtaactcgg aaagactatt tggaaaggtt ttcatcaaag tgattttctg cagatagctc
       61 ataggtgatc aggataaaac cccacagctt cagcacttca aatatttatc atatacacgt
      121 ttgcttgaat cttgataagg gtgaggtttg ggacttatgg acactgagat aggatgtcac
      181 ctgagacatt catctgattc cgaatgcaga ctgaaaggaa gtgcctggga gaggccagaa
      241 gagagaggga gggagacagt aagggatagt aggaatggac agcccttgtt cccagctcta
      301 atatcccagt gcaattattt tgtggacatc cactccttgc ctgcacagga gatagggcta
      361 taagtgtatg ttatttttta attacaaggg ggtggaaaaa atcctgatga tgggctggaa
      421 ggtgccattg cattgttatt tttttctctc ccttcgtttg ctgattatgt gagctgggct
      481 cctttgctag ccgatgataa gcagaatttc catgttctct gcataattaa tccatctctg
      541 cctctcttca tgccaactcg cccgttatcg ccggcacatg cctgaattgc aaaagaatcc
      601 gctcttcaat tggaacttat tgatattcta agaaaaaaaa gagagaagga aaaaaactga
      661 aaatccttaa gtttaagccg cagattttta aatggattaa tttcgctgca atcgcagcca
      721 tctaaggcgg gaaggcaggc agagcaaatt gaaagcatct ccatgtttgc agaattgggt
      781 ccagaatgct gaaatgtact ggcacagttc tcttttaaag tcagaaaatt accattcatt
      841 tacatcacat gaaatacttt tttatgctag aaatattcaa gagacgttcc ttaaatgcct
      901 gctaatgcta gataacattt ctaactttca acattttgct agactttgat atgacatgat
      961 aggaatgcct gccagtgagg aatattatat gtaccagtaa tctcttttta tcacatattt
     1021 agattatatc atcctcttct taaaccgtcc tgaagtagtc tttaaacaat gtagtcagtg
     1081 ttgtaggctc ccattagtac agttacacga
//
LOCUS       KCLA01001459             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23741upu ultra-conserved element locus uce-1660,
            sequence.
ACCESSION   KCLA01001459
VERSION     KCLA01001459.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23741upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-1660"
BASE COUNT          271 a          166 c          152 g          311 t
ORIGIN      
        1 cagctgagtt ataaacccct gaaaaacggg atttataatg gaaatgctga cacaacctta
       61 accgtagcgg tgctatctgg tgctgctgta atatactgta cgaagaaatc agttcattag
      121 ttagttataa acaaaggaca gagctagtaa attacagtag gtatttcagc agttttgtgt
      181 atatttatga cacaaaaata tgcagctgca ttttatttct tgagacagta tttaaggatt
      241 tcagatttaa tacacattag tttggttcgg ctcatcttgc gtttccgtct tgctgttccc
      301 tcttgtagtt ttattcgtgg tattttcttc tttctctgtt gctcattaga aaaatgttaa
      361 aaatccattt tcatctgatt aataataaag ctgatcacat gtaacctaat tttcattcac
      421 tgctgcccct gtctgtggag tcatatacaa agtgaccttt gaatcaccac tgggcccata
      481 aagcacaata agcaccattg tcctgtcaaa aattgaagat gttttacatc attacaaaat
      541 ttaatgttcc atcttttcaa atgcactact tttcaaaggc cacattccaa ttgaagctca
      601 ttaaaatcag actcaagttt cctgtggtgg ggatgagaaa gagtttctca tgcatttgga
      661 gtaatatgaa tcactctttt aaaacagata tggttacata ttagttttga aaggtacagt
      721 aactgctgag cctccactgt ctgcaacagt gaggcttttg tacttataaa tctaataact
      781 gcctcctgat cccttgtact tcatccacac tgtatcctat ttacttatga ataaatcaac
      841 tttctaaata aaattgttgt tcaaaagttc aggggttgaa ttataggagt ctttggctca
//
LOCUS       KCLA01001460             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23757upu ultra-conserved element locus uce-5617,
            sequence.
ACCESSION   KCLA01001460
VERSION     KCLA01001460.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-5617"
BASE COUNT          227 a          142 c          200 g          180 t
ORIGIN      
        1 gatgtgacag aagggaaagg caatctctaa gctccttggg acagccagtg gcttcccggc
       61 tgtggctgca ctgtgttctg ggaaggtaat ttttgtggat gcatttaact ttgggtgggg
      121 tggtactgat cagcctgtag tatcattctg tcatcaacgc tgtcgcttgg ttcacgggac
      181 attttaaggt gatgcagagg caggaaacag gttctttttc taaatcaaat ctaacatctg
      241 ctgtgtctgt gggtaacaga ttccgaggtg aaccgctgag tatgtcactg tacgcccggc
      301 agagttaagt gtggaaagtc actctgagca catgcagtaa tggatttgac ctccgagagc
      361 actacaaaga gaaattgcag ataaccatct gaactgcctt cagaagcctg tagccctgac
      421 tccctggata cccagagaaa agaggagggc taaatagatg gagtgaacaa tcagaaatac
      481 aaggttgaat aaatgcttac tgtctcaagt gctggcagta ggcaaaagca gagaagagca
      541 gcacattccc cacttgattc caacaacttg ggaaaagaga attccttaga cagctttata
      601 aaagtgaggt atagattcga cagaagcgag atgtgaaaga atggaaagat aaagatacag
      661 agctgggaag atcttaaaca cctttccatg gcaagcaatt gctgatggag gatcctaaag
      721 ggaaaggagg aatgtgttcc tctcagcag
//
LOCUS       KCLA01001461             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23773upu ultra-conserved element locus uce-7886,
            sequence.
ACCESSION   KCLA01001461
VERSION     KCLA01001461.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-7886"
BASE COUNT          203 a          136 c          122 g          242 t
ORIGIN      
        1 attctttctt ctgaggctga ctgccatttt gagaggtaat gtctccctct ctgcagaact
       61 tccaagccac cagctgtagg atcttactgt agtttcagac tgtagtcttt gtgatggcac
      121 agaacatggc aggagtggaa gcggctcctt aaaggatgtg ctaataggag gcaaggaaag
      181 ttaggctgat gcttgggaac cgagagttgg ttcagtggtt tgctgcttct tttttttcct
      241 gcaatccagg ttctacttta ggttcttctt gacaacgctg tgtaaaacaa aggcatcgct
      301 tttaaaactg tctaactaat atgatgaatg tcaatcactt aaaaaactcc actgtagcat
      361 aaacacatac tgtatacagc ttttattctg aattagaata attgaatcaa tgacagtgat
      421 ttgctaggat gtcaaatcta tccatcatat cctgtcacta ccagtttatt ttttgtgatc
      481 aaaatcaaaa agactactat tttgtcatca gctatttcat tagtgctaac aatcaggttt
      541 tcccttccct attttttaga tatgcctgtt atatttttta tttctaaagc cacaaatcct
      601 tttcagatct tttcaaaata aagtttcaga accaaactgt cagtttaata aagcaaaaag
      661 acatctcctc tcctgtgcca gtagatttca aatattatta ttg
//
LOCUS       KCLA01001462             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23788upu ultra-conserved element locus uce-2534,
            sequence.
ACCESSION   KCLA01001462
VERSION     KCLA01001462.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-2534"
BASE COUNT          179 a          176 c          168 g          196 t
ORIGIN      
        1 tcattattgc tgtgtctcct ctcgggaaac ccctctttgg ggttatttga atggatacca
       61 cacgggtcct tgacccgtgt cgcctgagta catcccacca tctgaagctc tgctttagga
      121 aagagctttc caaatgcttt cctgattgtt ccttgttgtt tcctcctggt ctttagtgga
      181 ggaagtaagt gacactgatc agtgaaggtg gacagtaaga tttataatgt atttgtgctc
      241 gctgattgcc aacagaaccg gcctttccca gcggtgctgt acgcgtactg ggaaaatcaa
      301 tagggattag cctatgaccc cctgcacata cttatactgt ggtctgcatt gcttaccaat
      361 atttcatctg tttcacttaa atgctgttac ttactcaata atgtggggct gttcttccaa
      421 gctactaatt aatttttcaa atgcagtatc acttggagca gagataacgg cacaccttca
      481 gcatcggagg gagcgatggg cagcggctcg ctcggtgcct ctaattcaca accctacttg
      541 gaaagattca gggtatacat tcagatttct gaaagcacta gatcaagtgc agagatcatt
      601 tcacaacagc cccaagcaat gcaagctgcc cagcggaaca ggacctggag atgctggcag
      661 acagccggct tcataggagc cagcagggtg cccaggtgac accaagccaa tggcatcct
//
LOCUS       KCLA01001463             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23819upu ultra-conserved element locus uce-1650,
            sequence.
ACCESSION   KCLA01001463
VERSION     KCLA01001463.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-1650"
BASE COUNT          166 a          157 c          151 g          167 t
ORIGIN      
        1 gaagaaggga ggccggagag gggcattttc tccctggcgg cttggagagg tgggccggag
       61 ctttgagagg ctgacagatc tgaagtttgg gaggctgaat gaaaggaaca ctcagctaac
      121 aaaacagtgc gccacagaag aagtttcatc tggtctggcc aaatccctcc tttctttgca
      181 tcttttctct cctaataaca gctgccctct cattccctgt tactccgctg tgaagaacaa
      241 aacctccctc tgactatctg tttttctttt cttccccaga gtaggtctca ttactggtga
      301 ttagcagatg attaaaacca attcagcttc ccccagtaga tattttctcc ctgtttgtga
      361 ctaacgcgtc agtcttcaat gaacgtgctc ctaagcttat taacgggctc agaggattag
      421 ctgccaccga gcgccgccgc tccgatattg tgatgcagcg agtgacatgg aaccgtttgc
      481 tgagcacagc cagggccgct gggaccaaat atctaaatca caattttagt tttcgtgtag
      541 agcgaggcta atcctcacaa taattacaaa aatcaaacgt ttggcgaagt ctggaaacag
      601 ctttaaactt aagggcagga gctctgccat gcaggaacaa c
//
LOCUS       KCLA01001464            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23833upu ultra-conserved element locus uce-1063,
            sequence.
ACCESSION   KCLA01001464
VERSION     KCLA01001464.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-1063"
BASE COUNT          259 a          200 c          240 g          305 t
ORIGIN      
        1 tgctatcctg catgcccgtg ttaagtgttc cttgagcacc atgctgaagt ggaagtaatc
       61 atgttgtttg cttgtggttt agctttttca cgttttggaa ggcacttttg ctgaggtgtg
      121 gtggagcagt cttgggctat caggatggca ccaggcacgc tcaagctatc acaggtactc
      181 tcctcccttc tggaaagaga atctggtgcc catcaaatgc ctgttgcttg ttttgtacgt
      241 gcactcagtg gcaccctggt aggcgatttt cgtgataatt agttttggtg agctctgggt
      301 agagggtgca gcctgtgtca cacatggaag agctgagcat tgctcgcagt ccgacatcat
      361 gcctgacctt gcagctcagt attaatttga agtagtggaa ttaaaatttc ccattctttt
      421 gcattgtcat gcctcacgtt gataagcaca aagaaatgta aataaaagag acctatttca
      481 caaccctagc tacaaccttt ttgttttatg acaaaagaca gctaattagc atactagcag
      541 taagcagcct tcccaaactc gcactaatta tgtattctgt tgaccgtgac tccagtcata
      601 aggtaattgg cttgcagcaa catgacattt caaatcatct cttgaaatta catcaaaaag
      661 ccagcctgtt ttgttttgat aggggaacaa tcaatttgat aagtggtaac acagctcatt
      721 gtttcacatt aattagacta attgcagcat gttagcctct gaaatagaca gaacttggag
      781 aagacaaagg ctgtggcctt tagcatgcag tgcatgtggt ggttccactt gcttgcacat
      841 actgtaggca gaaaacagag ttgttaggat tcagccttgc gggaggctgg gtgttaacag
      901 tggtttgatg tgttatgctt aatccactgg ctttcaatta taacttccag gttcaaaatt
      961 ccatgagaga ggtggggggt gctgggttca gtattaatgg ggcc
//
LOCUS       KCLA01001465            1024 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23849upu ultra-conserved element locus uce-5438,
            sequence.
ACCESSION   KCLA01001465
VERSION     KCLA01001465.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23849upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1024
                     /note="ultra-conserved element locus uce-5438"
BASE COUNT          266 a          254 c          256 g          248 t
ORIGIN      
        1 atttcagaac aagagcttca agaagctcct gaagtgcagc acttcagggt ttgtgtgcct
       61 ggcagggttt gaggggaggg ggctgctgag aagataagca tctagggctc acccaccgtt
      121 tatggtggaa tgggagcttt gaaatcttct taaccagtag ccctctcccc tacaaaaccc
      181 caccagaaac aaaccctggc atcacattga actgctgtca ctccttgaag catctcgaaa
      241 gcagaggggc aagggctgct gcgtgccttt gtgcccagga aattgagtgt catgggttgc
      301 cctttagact tgtccggaca aaggacaaga gatcgccacc tcctctgaat acttcaaacg
      361 ctatagcacg gttacctggt ctgagcagcc tccaagaagc ctttgccgtc caccagaagc
      421 agctttgtcc ttccccacga gccaggctga gccgttgttt tgtaatgaac aacttccatc
      481 agagcacacg atttctcatc ctgtctgact gctgataatt cctgtaatta agtctccttt
      541 gattgtcttt ggcagcgcac catctgcaca agaaagcaca cctggaaagc tgctctcctc
      601 tgctttttcc atccttgatt aaactctgct ttaaagcaga ggcccttaat cagaagagcg
      661 gtctgactga gcgtagctgc ccggtctcac ttttgtggta gcttcccctg aacaccccag
      721 gatttgcata atgccttcca gaaaagagtc cgccttggaa gggtggcatt ggcagagggt
      781 ttcacttttc ggagagaaag tcaaatgaat gagaagggag ggtagggtac cgacgactct
      841 gcctgggttt caggagtaat gactgcaaaa cccacagaac tgaccagaaa aaacttctgc
      901 actgctctta aaaccaagaa tctctttgca gagagagttg aaggaatgta caaggaaacg
      961 gacactgctt aatgaagatc aggtttaagg tgctgctgcc cctgtaattg cagggagggg
     1021 aggc
//
LOCUS       KCLA01001466             975 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23865upu ultra-conserved element locus uce-7889,
            sequence.
ACCESSION   KCLA01001466
VERSION     KCLA01001466.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 975)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 975)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23865upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>975
                     /note="ultra-conserved element locus uce-7889"
BASE COUNT          292 a          207 c          171 g          305 t
ORIGIN      
        1 atagtacaca aaataaaact gtgatgttac acagccccac atttcacata acctatgaaa
       61 actatgtttt gattctccaa gggcctgtca cacaaagcca gttttggctc ttactgttcc
      121 aatttaaggt cagccacaag tttcagtaga caagataaaa tacagcacac agtttctagg
      181 acttgcagca ccaccaagca tttctactcc tcctcaccgc tgctctctga tgcgtctttg
      241 cacaataatg atggcactta gattagagag tgtccaaatg taaaatagga gtgaggcagt
      301 caacaaacaa tgttgtcagc tgtgcagata tgctgaaata atgattctgg caacatgata
      361 gcaaaacatt agaaattctt tggtaagcaa ataatttaat tatgttcttt tctcaggcag
      421 ttcatattgc atgactcctg accatttata ttgctaaact cacacttccc atttctgtca
      481 gagaatttct ccttcttgta ccatttaatg cagtgtgctc caggtgttct gtggtgaatt
      541 aatagctata ttaacacctg tcagacataa tcacagtcta ttcatcatct tctgatggct
      601 gcatgaagct ctgcttccag cagcttcctt ctctatttcc ttgttcaaat gtttgcagtg
      661 ctatcagccc atctgtcaag cctgccattt agagggaaaa cagtatcagt gctttaaata
      721 tatggagttc tccattgaaa aggtgctgtg attgaactgt cagcatcccc agtatcacag
      781 atagtaattc atgactggtt gctattatca tgctgaccta gccaggtcat gctgagagat
      841 ttttcacttg cagttaggtt tataaatagt gcaattaacc tctcagaaat tacaaaatgt
      901 tcttggctcc ttctctacaa attctattgc tgttttaagt attataacaa acaaggggga
      961 aaaacaacag gaaag
//
LOCUS       KCLA01001467             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23881upu ultra-conserved element locus uce-2752,
            sequence.
ACCESSION   KCLA01001467
VERSION     KCLA01001467.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23881upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-2752"
BASE COUNT           79 a          124 c          119 g           80 t
ORIGIN      
        1 catcgctcct tctcccctct cctgggctgc ttctccctca ttctccttcc tgtccctctc
       61 tcctggccag gctgatggat atgcagagta tgttaagaag caagcggttc tgtcaccaag
      121 ctgatggtgc tcagtgactc ctccagctcc tggctggtct gtactgcagg agcttgacac
      181 cctgaccact gaggcataaa aaacagagaa ttggaagcct cagcctgaca ggcaccggag
      241 catcccccag agagggtcca cgatgtgtgt ctgctgtggg gaggagggca gtgaggatgg
      301 tgggggacga gagcgtggaa caatgaactg tcagcccgtg cccacccgca gccctgccgc
      361 agcccagcgc agcatgggcg caggagctgg gaccgtgcca cc
//
LOCUS       KCLA01001468             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23896upu ultra-conserved element locus uce-55,
            sequence.
ACCESSION   KCLA01001468
VERSION     KCLA01001468.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23896upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-55"
BASE COUNT          271 a          253 c          191 g          197 t
ORIGIN      
        1 agagaaatgc ggtcccctaa gacagagaaa gctgctgcct aacgcaccac cagcttgaac
       61 caagcaagca attaggatct tcgaagagac cacggggctg gaagggccag tccccattag
      121 tggtgcctgc gcagatctcg cggaccctga tggaacacgg accctgcaat gtccatgacc
      181 ttgacgcgca gtatcgatag ctacaccttc agcctcttgc agataatgag atgcaatcgc
      241 ggagccctgt gcactgcacc aggcatccca ttaaaaaagc acattatggg ggggaaggac
      301 attgagctct ttagacagaa ggtagtgaat caaaaattgc aaaacctcag cgttcaaaaa
      361 tagcctcggt gacctcttac aatactctga ccactccatc acaagcagga ggcaacccct
      421 gtgaagagcg aattctggca aagttctctc ttcacagatg atgcacagct taggctataa
      481 tgagtttttg ggttacaaat gctgaacgca ttaatattcc ttgatgataa ttatcacagt
      541 ataagcacct ttcccaatgt gagtagcata aagcgactga agcagcattt ttactacagt
      601 cgaaacaagc tggaaaatgg gattttctac tcttgtaacc tgaggtcact gtacatcaag
      661 ctctgcatat taaatactcc tcccctacag aaaggaacag gccgttccac gcagtcacac
      721 acacgcagtt agcaccccaa ctcttccatc tacaaacacg ccgcacggac cgacagcgct
      781 cggcaactgc ccccaacccg acgtcctagt gaagacccca ataacccata aacaggctgc
      841 acagctgcct cctggatgtg aactatgcct ccacattcct cttcattagc tgctaatatc
      901 caagaacttg ca
//
LOCUS       KCLA01001469             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23912upu ultra-conserved element locus uce-462,
            sequence.
ACCESSION   KCLA01001469
VERSION     KCLA01001469.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23912upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-462"
BASE COUNT          286 a          175 c          177 g          320 t
ORIGIN      
        1 caacctgaaa cacaacaacc tgctgtgtgg attggtttat tgtttaattt ccagaaacaa
       61 tcttaaatga gcagtgttgc tttcaagtct tatttttcat tttggccacc aacattactc
      121 caatctcttc aaagttttaa gttttccagt gcaatggaca gtagttgtag ttgcagcttc
      181 acttcattaa tcgtagaatt gtattgtata gtaatttata tgttttgtgg aaagtatatg
      241 tagaattaat tcatacatcc ttcttgacca aaataatgtc aggtacagta ttaccaactt
      301 tcttgaaaga gagtgttctt ttccctttca taactatgtt cattaataaa tttaaataaa
      361 tttgcactag gttaaactgt gtgtccatat acacatacat tgtatatgtg atttctggtg
      421 aacaaatatt ttgtggctac ttaatttatg actacaaagt tgtgataata ttagattttg
      481 gcttgctgtg cataaagtgt gtcaaacttc agctacagac cagggggtga agttggtcaa
      541 tttaattccc caagatctaa agaaggtcgg tatcatttca tatagccctg gcagagcaga
      601 tcattaccag acacaaatct gttcgttaca tgccgagggt ttatagcaaa ataaatagac
      661 tgtcatcata agttcagaaa attgtgtgtt cgacccacga taatgtgtaa agggcgttta
      721 atagagttca gcatttattc gttatctata tgcggacaga gacggcggta gcgttatcag
      781 cttttttaaa aaagtcggta gttttctgta tcacgtgatg tgcctcacag acacacacac
      841 acgcatgcac acaccccatc tcgctctctg cggcgcagtt ttgattttag tcacagcaga
      901 aggcttagcc acaagagatt ccactggttc aaaccagcgt aaaccagatg tatttttt
//
LOCUS       KCLA01001470             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23927upu ultra-conserved element locus uce-2210,
            sequence.
ACCESSION   KCLA01001470
VERSION     KCLA01001470.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23927upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-2210"
BASE COUNT          256 a          188 c          210 g          289 t
ORIGIN      
        1 aaagagacgc taaaaatcca gctgctggct ctctccctga gctctcagag aagttcatat
       61 cgcagcctct gtcgtgtttt gaatgctagt ggaggagata gcagcagcag tagtagtttt
      121 gggagaccta aatagaaagg gtaggagaag cagttatcat caagcttttg ctttgaaatg
      181 taaacttagc aaagacttcc ctgatgaagc atacatatgg aactacaaaa cgccactttt
      241 tccccatttg ttttcctgac cataaccacg ttttcacact gtcagcattt tcattagaag
      301 ctctttttgt cagaggttta taacgagaat gtaaagattt gctatgggct aaatctcaat
      361 ccaagagcaa atgtttatac caattctgaa aacaatcagc ttgcccattt gtagttatgc
      421 atgtgttcat catctgttac tgcttgtcca atgctctgca acttctggaa ggaaaaagag
      481 acatctggag gaaaaaaaaa agtgctatcc tgcagatagc acgctgtatg ttctcttgag
      541 ttattgaata aggtactaca tgagcacagg cttttcgggg gatacagagt tgcttttgct
      601 taagcttgtc aaattcaaca cagagagtgt ttgaacgggc ggttcgagct cgtctccctt
      661 tgtgcattgc tcacgtggaa gctacattaa aaattccctg ggaagcgttc acctaatgaa
      721 ctgaaccgct tttctgatgc caggcacgat gagttctttg aaaatgtttt agcttatctt
      781 ctggacctgg gggttaacag ggttttcctg tctgtcactt ccactgtatc agtcattaag
      841 tcccactgtg ttctggggat gagctaaact taagggatga tttcagtctt tatcctcttc
      901 tggctacgtt gctttgaaca aaaaggtgga tagtgtgggc ttg
//
LOCUS       KCLA01001471             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23942upu ultra-conserved element locus uce-2366,
            sequence.
ACCESSION   KCLA01001471
VERSION     KCLA01001471.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23942upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-2366"
BASE COUNT          247 a          200 c          193 g          272 t
ORIGIN      
        1 ttctgaagcg caatgaggtc cgggttttct actcccatac ccccccagag caagtaggtt
       61 agcttggtgg gctacctgaa ctactgtatg ggaaggagaa tcctcacgtg gccaggtctc
      121 ccagacagcg acatacggac tagcactagc acttagcttt cactgtgatc tcaacacatc
      181 ccaggagctt aaccgctgga gatgtacttt tccctgggca acaatcctga aggaagcacc
      241 gtatcaaaca acacagcttg ggcaggcctt taaaagaact tacacatgac atcatcgctc
      301 gtaataccgt atgaacatga aaacatgtct tatttgtatg atgtttacat atacaacaac
      361 atgatcaact gcaaacttgt ctctcatgta gaagagtgtg cacctcctac catcatatcc
      421 tttgggggat atatctctgg attgcacctt gggagctatg gctctcttgc cataggcatg
      481 gttgtcataa ctgttatatt caaacgtagt cttagagtat ttctctagtt ccttggccaa
      541 gttggagcgg ggtgtggtgg tggggacatt gtttctgtag ccatactgag ggatctccaa
      601 ttgcttaaca aagcacatgg gcctagaaat taaagatatg taaagtttgt tagatgcagt
      661 tcagttcact gtgtctgtgc ataatttata gttcagatta gaaaatctta gttatttctc
      721 gtactcaaga gacagcaata tattattgca tttgcttagt ttggttattt tcagcagaca
      781 aacaatttat attttcttga acaaagccta ggcaaaatta atcctgacac cactgcttgg
      841 atcctggagc taaaaggggg ttaaaactct tctttccctt tccccgtgga attgcatcct
      901 tctctctcgg ga
//
LOCUS       KCLA01001472             959 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23956upu ultra-conserved element locus uce-6248,
            sequence.
ACCESSION   KCLA01001472
VERSION     KCLA01001472.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>959
                     /note="ultra-conserved element locus uce-6248"
BASE COUNT          293 a          196 c          175 g          295 t
ORIGIN      
        1 aactttgcag taccatctgt ctgtgaaatg caaccttcta aacacagcca aagtgtgtac
       61 ttcccttgtc tttgaactag taaacacaat ttaatagaca caaccaagaa gaactttttc
      121 cccacagctg ctttatgtgt aaatgagatg catttatttc tgtaaactgg attgtactgt
      181 atgaagataa cactcataag gccactcaga tgcttgcaga gtaaaaaatt cggcatgttt
      241 gtggcaaaaa ctgttttgaa gtggcttggg tgttcatcaa attgcttaaa acttcatttc
      301 attagcaaat gtcatatgta cagattgcca gaggacttaa tggtgaccat gctaatagac
      361 aacttccagc atgctgcagt gagagaccat ttgtaattct cattaacagt tctaccacat
      421 ttggttgcat gaaaagtgat aacacactga tctaacagtc attaagaact ttttcttact
      481 cctttaggat taatttgcac tgacccagaa ttctctattt gcttaacaca agcagtgggc
      541 cactttgatg ttatctgctt ctataaacaa tagcatacag ttctctcctg ggctaaacca
      601 gctcttattc tactgagaat tagctgtatt aatcattctg aagtccaaga gtgcatgatc
      661 gtaaactgtg cgcagggacc tcacttagca actcccaaga ctctcattta tcaacatttt
      721 ttccccttcc tggatattta gcgtgtaggg agtgatttat ttctgagcca gtccttggtg
      781 atgcttttca tgttgaagta cagttggaaa actttctgca caaatataat ttccttattg
      841 tacaaacgga gattatggtc cacagctaca gactgattcc ctcaagcggc cagaacagaa
      901 aacacaggcc aagaggacat taagttctgg atgaaccata aataaaagaa gtgagttgc
//
LOCUS       KCLA01001473             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23971upu ultra-conserved element locus uce-5606,
            sequence.
ACCESSION   KCLA01001473
VERSION     KCLA01001473.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23971upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-5606"
BASE COUNT          198 a          184 c          228 g          275 t
ORIGIN      
        1 agtctttcat ttattatgtt ttactcgaat tggctcaagt gttgaattgc attcttgtgt
       61 aaaatcccta gtgagtattt gctccttaac atccacattc cccctcctgt ctttggtaaa
      121 ttgtatttta attgatgtca gtccaggagc gttcaattta gttctagttg gctcccagcg
      181 ctctccgccc cgtggtatcg ctgtgtaaat gtctccgtgt tcagctgtgg tttctacgag
      241 ctggggatgt tgggatgttt gtggctaact tgtctcttct gggggatctt atattttatc
      301 ttgccttttc gtgtgtcttt ctgtagacat atctgaagag atggattaag aatgctttgg
      361 attaaaggat tgtggagcac atgtcaatca ttttaggatt gtcaaaagga ggattgagga
      421 ggatcagatc aataatggag gcaatggtat gactccaagt gctattgtca cagatgaact
      481 tggcagtatt gaccttatac cgagagacag gctcaccgag ctagcggccc cccgtgtcgc
      541 tcgggcacgg tgtagtcacc gcaggccgca agcgctctgt tctttaaaac cctctctggg
      601 gattcaattc tggccgagtc cttttgtaat tctctcccat tcgagccctc taaaggaaca
      661 aacggggcaa ggggtgggag cagcgggttt gctcgatccc gtagcggtta cgagtgttgc
      721 tgttgcgtag tgctcgtaca cttgtagtag acgaggggta tcatgcgatc agagtataat
      781 atcaatactg ctccaacctg catgtcctct gtgtgactgg tacagcgttg ctggtgcgtt
      841 gtatttgagt ctcagaatga aaaacaaaaa accatagcgg ggagg
//
LOCUS       KCLA01001474             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 23986upu ultra-conserved element locus uce-3862,
            sequence.
ACCESSION   KCLA01001474
VERSION     KCLA01001474.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="23986upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-3862"
BASE COUNT          313 a          196 c          165 g          266 t
ORIGIN      
        1 aggtatgttt aatgagctgc taccaaaaca actggttaaa ggaagctccg aaaaagctgc
       61 attgtgctta gaactgaaac accctcttgt ttgaaagagc ccagtcaaag tcaagcccca
      121 tcaaacaaat caagtctcct ctaaactttg taaccgtgtg cacccagaaa cacattaaaa
      181 caacggcgtc cctcttcaca tgagcttctt ttcagagcaa ctcaacttct ggtttggacc
      241 tggcaattct ggcatttttt acagacagaa tgaaatatct aaagtgtctc taaattaaca
      301 agtaccactt gccatagaca gcatcgcctc tagcagctcc ttaaaacttc agaaaaggat
      361 cttaaaacag gaagcttagt gagctcataa aactgttgtt ggagccagga acacatagca
      421 tatttaatct gcaaactgtg agagtctaca atgatttcag caagatctga ggcatgccct
      481 caaggtttgc tgggatctgg gattagggag ttgataagaa ctctctactg cccatggaca
      541 tgtttttctt ctgcagttaa acacaaatac atagagacat ttgactgctg cttggcgtta
      601 ctgctcaagt tatataaaag ctttgcagct ccttttgctg tcaatatatc aaagtttaaa
      661 aaaaatcatc aaagtgtgaa atttcattta aagtctttgc cagtctacag ctctatttca
      721 cagacctatc aaataaaagt aaagatgaaa aatgcactga aagaacttga aaagtttgca
      781 gcagcactcg tgccctgttt ttgtttattc tgtctcattt tatttaattt taaagtataa
      841 caaatcaatt cccttactga actgacaaag tctataggga ggacgcccat aaaacctacg
      901 attaaaagac aacctgaaat cattacgaaa gctgaagctt
//
LOCUS       KCLA01001475             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24001upu ultra-conserved element locus uce-3655,
            sequence.
ACCESSION   KCLA01001475
VERSION     KCLA01001475.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24001upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-3655"
BASE COUNT          237 a          166 c          182 g          209 t
ORIGIN      
        1 gggggaacaa tatatatcct aaacacttct ggacagcagc tgtggatgga aaatatatag
       61 gacagcaaag cttgtgaagt gtacaaaaaa aacagggcaa gtgaaacatg cctgaagatt
      121 gggaatccca gggcatccat gtgcttcagc tcagaaaaaa gagggatgct gcatttcaca
      181 gcagaaagcc ttaaaaaaaa taaaatacaa ataattgctt tggggacctg agttaaaatg
      241 caggtgtttt gaggggaaca taaacatttt ttcctaaatg aggcgttgag ggctgggaga
      301 agggcagtaa aattagtgga attactgcct gattttaacc agatgattgc tgcagttgga
      361 caccagtgcg gtttcattag ggactctaat ttacaagcca ttcgccgcat tccaggggaa
      421 cgaagcaact ccccctccac ccctctgctc ctaaagaatg ccagccccga gctttatggc
      481 agcaatgcct gactgcacac ttgctggctt tggggctttt ctggtcgttt ttgctattgt
      541 tggttttttt taaggccagc ttggcactgc agccaagcat tctggggaga gagacaaaga
      601 tttgcactgc cctaacccaa acaggtaatc ccaggagtct gtgtaaatct ccatcgccat
      661 gaagaacatg tggtccttct actgagagct gtcttgattt acacataaca tgcaatcaga
      721 tatatgacat catttcagtg ttagatacta gtatattcca gatataaaaa gacccttctc
      781 ttggccttcc atta
//
LOCUS       KCLA01001476             540 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24016upu ultra-conserved element locus uce-7988,
            sequence.
ACCESSION   KCLA01001476
VERSION     KCLA01001476.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 540)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..540
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24016upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>540
                     /note="ultra-conserved element locus uce-7988"
BASE COUNT          161 a          109 c           99 g          171 t
ORIGIN      
        1 ttctcttaga gaacttccca aacactgcag acacgtggaa ctttcgatcg tgaaatgctc
       61 gacccgataa agttgacatc caccagcgtt attcgctttc tctggtgggc agccccatga
      121 tctgttcttc aatctgctct gcccattttc ttagctctct ctgggaaatt aaataatcct
      181 gactgacaac tgacacatta attgcctttg agggagcaca cctttaaaaa gcagtaattt
      241 aaagtcttct gctttggtgg aagaaccaat ttgcagcatc atcagtcagg gttttgacac
      301 gtaactttgc acttgccatt tggttaataa agaatcacac ttgaatcctg agagagtgtt
      361 tccctaaaga gaaacttcga tgtctttgtg aaattaagat gacttttata gggacatgta
      421 atgaatgttt aaatgagtta ttaacctttc atgacttcgg cgagtgttaa tgcaagacaa
      481 ttcatcatta tattgtcata aaccacaaaa aggtgaatat cacagtaaga ttaatttctt
//
LOCUS       KCLA01001477            1068 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24032upu ultra-conserved element locus uce-3991,
            sequence.
ACCESSION   KCLA01001477
VERSION     KCLA01001477.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24032upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1068
                     /note="ultra-conserved element locus uce-3991"
BASE COUNT          336 a          238 c          192 g          302 t
ORIGIN      
        1 taaagaggct tcacacgatg aattttcgta cataatgaac aataaattac ttgctcttac
       61 gccaaatcag tcgagcgaag gctgaaaacc agagactgaa gcgcaacatc aggtctgtgt
      121 tccatgcaaa gatcaaaatg ctaagtacta caactttttg caagaaaggt tttagatggg
      181 agcaggtggg gagaagcaca ttagaagagt acacaggctg ttactccatg tgtgtttgca
      241 ggactataat aaatgttttt aatctatgaa acatctggga ctaaacatct aatccaaatc
      301 tttttttccc taaaagatat aatagtttta aagtgcctga caccagctct gcaatataaa
      361 tctgaaacta aaagcacaca tccatttttt ctaggagtat aaaatatgca gaatcctacc
      421 aggccatatt gccatgggct gtgttgtcaa ggtgacagag tagctccagg gtttgagtgt
      481 tgcttgatga atcatcaggg gattcatgac tgcctgattc caattccttt ggcatcctcc
      541 aaacagcagc gcatgtcatg actttactgt ctgaagctag gcaacaaaga atagtgtcaa
      601 cagatcactg tatgggagac atattttgtc tacagtgcat caacatttac acaaatctat
      661 aagcaaagca catctgttgt ttaaaaaatt taacaatact acaccaagaa taattccaag
      721 aacgcagaac gcgaatacag acacagccct caagttcccc atgaagttga ttctaacctc
      781 ccaattccta tgcatttagc acacgcctcc ctctttaaaa gtgaaattca accttggtga
      841 aagagtccct ctatgggagg caagtgttcc gagctttatc ccccacaccg atgttggtga
      901 taatgaccca cacgttacac tgctggattg ctttcctgta aggatttaaa catcacttta
      961 tccttctcct tccaaggact attctcagtt cagcctgcga cattaagttg cccttcatta
     1021 ccagcaacta cttattgcta aattacagtt tcctctcctc taatacta
//
LOCUS       KCLA01001478             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24047upu ultra-conserved element locus uce-4389,
            sequence.
ACCESSION   KCLA01001478
VERSION     KCLA01001478.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-4389"
BASE COUNT          196 a          166 c          118 g          179 t
ORIGIN      
        1 taaaggtgtc cattccactc acctggacat taggacactg aaaaaagttg ccattcccca
       61 tctttatgta gtactctttc agcctttttc ggagtgaata aacaccaaga cattagtctg
      121 ctccgtgcag attcagactt tcagctttaa caagaagcca gatttttgtc ttcacctctg
      181 tctttaattc tgctttggtt ttccaccacc agaacgtctc agccaggcaa tcccatgaca
      241 aacttcacta aggacttcac agttaacaaa acaatgaatg aaacatcatt cttgcacaca
      301 gaacagcttt ctgctgtctt ctgccgcctt cgctttctcc acccaaagtg gaaaagcaac
      361 ttcaaaaaca aggtgctgtc attctagcaa aggagaattg ggactgtgaa aggacgaagt
      421 gtccttgcac agaaaaactg cagctaaaat tgtatcaata ttcctgttat aaactgataa
      481 acacagagct cagtgaggtc aagttgtaca tgcttgagct gacatgccaa tctgccagca
      541 gtcatatggt tctcatatgg cgacacgcca cagatgccag gaaaatgtga gaagtttctg
      601 gctcatttca tttcactctc ctgaatgcca tgtttgcctg cacacacaca cacacacac
//
LOCUS       KCLA01001479             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24063upu ultra-conserved element locus uce-3159,
            sequence.
ACCESSION   KCLA01001479
VERSION     KCLA01001479.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-3159"
BASE COUNT          181 a          134 c          118 g          196 t
ORIGIN      
        1 agagggaaat tattaactca tactttggtt cggcaattat ctgcattaca aggtttatgc
       61 aattagctgt ttaagatgtc attatatttt gccatctggt acacaggagt ttatgcatat
      121 gaacaggcac gtgttgaagt gattttcact atatgactct tgatctcaac ccaaatcatc
      181 actataatga gtggaagaca cagtgtacag tacattagtg gcaggtgcat actatcaact
      241 tcattttaat agaagacttt catgtttcca tttttaaagt attccgcaca agtgctgcaa
      301 aattaattgc tcgtttgcaa tttagcaaaa acggaggaca tgttattgct aaatgctaag
      361 gaacatcagt tttcagcaac gcggccacta atttaagttc ttcccatctg taacttcagg
      421 ccaatttctg ctccagacca tgagaaagtc tcgctgaagt tcagcttaaa atgttctttc
      481 atttcacggt gaacacactg agctaccttt gatagtctcg cagcattgaa aacgcaggga
      541 tgtcttaaaa ccacctgtgc tacaacaacc tacagaccac tgttctctgc cactgtggcc
      601 agtgtccttg ggttacctca gcctgtctg
//
LOCUS       KCLA01001480             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24079upu ultra-conserved element locus uce-2563,
            sequence.
ACCESSION   KCLA01001480
VERSION     KCLA01001480.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24079upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-2563"
BASE COUNT          260 a          138 c          142 g          240 t
ORIGIN      
        1 acttctatag aaatcctttt cctaagacct atggactgaa ggcaaagaca cattttcttc
       61 cactgttact ccttaatagg tttaaatctc agtcaggaag aaaaaatata tgtctttcta
      121 actaatacca tgtcatctct ttaatcatgc tgattctgaa taatttgccc actgtggaag
      181 ttgcagggtg aggatctata gctcaatctc tcactgaggc gagtttatca ttactgagcc
      241 tgacagcaga aagccctggc aggttaattg ctgcagcaag actagctggg agtttgctgt
      301 tgatatatag tgactaaagg gagtgaaaga gattgactat gcctgttaca gcacaaatat
      361 cttcatgtgc ctcaggttcc tcagaaagat atgagaaata aatgttcact gttcattttc
      421 tgtctgcaaa atagaaatag cttcaggctg aatgtggcaa caacagcata cacaatatat
      481 atataaaaga ggaaatttgc aaattaacat tacagacatt cctgcctgaa aatgctgaaa
      541 tcactttcaa tacagtttgc attttaatga gctgccaaag agataactca gttatatctg
      601 aagaacactt ggctagcatt gaagttttca aatcatatca tgttttaact aatactagat
      661 taagtaaacc actgttaatt gaaggtgtgg gaaaacttac tttagttaat gaagtaaact
      721 gtttctggtt atatagagtc attaattgaa ctcagacagc catttcctag gaaaaacttc
//
LOCUS       KCLA01001481             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24094upu ultra-conserved element locus uce-4160,
            sequence.
ACCESSION   KCLA01001481
VERSION     KCLA01001481.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24094upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-4160"
BASE COUNT          229 a          149 c          142 g          207 t
ORIGIN      
        1 tcaaataaat aagagccatg gaaggaaaaa actgcagcta caaagtagtt ctaacccatt
       61 aaatgcagat ggcccacagg gggtttaatc ataagagaga gaacacacat catgctgaaa
      121 tatagagctg ttttctatca cttgttacca tttgaatgtc tgtcccagga aagtgaattc
      181 aatatatctt cctggccatc agttgccctt tgaatactcc ttctctctct gatgtagcta
      241 gattttcctt tagaacatac agagatgaat gagctcttac cacacgtaga agtgaaagaa
      301 aacatttctt tctgcaccag aacagatgag attcatcatt aagagaatgg atttgacctt
      361 gtcaagtgga ccaaagcaat ttataaacaa actcctacag gggaggctac ttttggccaa
      421 gtactatatt agcagtgttt tacttatgcc cgctgctacc ttacaataac ttcgcaaaca
      481 ggctgacttc ctgaaatata gagtgctgag agatatcaca gatgtaccta gaaacagtgt
      541 gatagcatag ggttacttcc ctccctcgag gctgtacaga aatacgtaca cctacctcgc
      601 tatctcgttc gtggcaagag ttgctgttta ctacccaaaa gaaaactcgt tttgatgttt
      661 agagtatgca tcagagacca tatttgcata atctggttgt ttgtgtaagc agcacctata
      721 tggatga
//
LOCUS       KCLA01001482             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24110upu ultra-conserved element locus uce-2923,
            sequence.
ACCESSION   KCLA01001482
VERSION     KCLA01001482.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24110upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-2923"
BASE COUNT          190 a          181 c          255 g          205 t
ORIGIN      
        1 aaatcagagt aagtgatttg atccacagca ccagagtgga agaggtgagg acagttctgc
       61 agagggggcc gatttcacgg tgtctacctt tagagctgct ggcatggatg agacctggtt
      121 tgctgggtgg gggtgggggc tggctttttt tagcagtact gttggcattg actggagatg
      181 actggaatga gttggaaaga aagaggccat ctgaaactgg gcgaggctgg cgggagggct
      241 gctgtggctt aagggtggca ggaggaaagt caccatacga ttttcttgtg ctggagtact
      301 tatcctgacc tgctagattg gaatcctcct cctcctcatc atcatcattg tatgcaacaa
      361 acttggcagt ataaatcgtg tcaggggaga ggacctgtgt tttgaggtaa gaggtgtttc
      421 gctgaggtgg gggaggagga gcgttagatg aaggggttgg ggatgggagt tcatattccc
      481 gtggaagtgg aggtctgtac agaccaggct cgtcaggttc cagcaatctt cgttctgctt
      541 catcgtgctg cctgcgccgc tcagcctcta agcgactgta atattcctct tcctgtcgcc
      601 tctgtaaggc cagaagaaaa caaacagtgg tcagaatggc attctggact cagctatcca
      661 tcagcaagct acaaacagct ggtctcctgt tctgacagca agcagagcat ctctaggggc
      721 cccgcaagga ctctctgctc ccacaaaagg aatggcagct actgtcactg ccagatctac
      781 tgctgtctgc ggtaactgca gcaactgcat gtgtgagctg agggcgatcc c
//
LOCUS       KCLA01001483            1071 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24141upu ultra-conserved element locus uce-2598,
            sequence.
ACCESSION   KCLA01001483
VERSION     KCLA01001483.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24141upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1071
                     /note="ultra-conserved element locus uce-2598"
BASE COUNT          330 a          240 c          222 g          279 t
ORIGIN      
        1 agctctaacc ccatgccagc gtcctcgcag ctcccccttt tcagcacatg tagctcatca
       61 cgcgcctgaa ccaccaacta gagagacgct ctgaggctga acttacttat gaacactact
      121 ataatcaagc taaatttatc gaggtcgata cttgggttgg cgaaagtatc gcagaaggtg
      181 gtgtagatga tcatgaggag cacgcagctg ctgatggtgc caaagggagg cttcttcctt
      241 tcgagccagt ccttgatgta ccttcggaca atctgaaaca cagaaaccaa caggttgcct
      301 cttttcaaag atgcagggcg ccaagttggg catcacaaag tgaatgtgac agcgggaaga
      361 cacaaagaga agagagtaat ttggatgacg gccacagcgg atttcaaagt ttccctgcca
      421 cacaactctt cttctgggga atttaacatt tgtagtgcaa cttccactgg gcgtccataa
      481 tgagagtata ttttcaagta cattcaaatc tatccttaat catgccaaat gttctttgct
      541 agctgtcacc gagacgtgcc cattaagcct ccccaaagtt tatctcctct gctgatacta
      601 atggatggat gtaattatca cagtcccctt tgcaccaaca gacaattcca agcgcaactt
      661 tgggaatctt aaaaatctga catcctcagg aatttcacgt cggtagataa tcgaaagtga
      721 tccatggaac agtttaatat ttaactagcc agcgatgcac cagaagtttt taattaaatt
      781 ataactcaag cttgaaaagc aaaagtgcat gtgttgtggg agcttaaatt attcaaactc
      841 tgaatatctg gagattttgg aaatccaaag acaaatgccg tttgcaggct cgtagaataa
      901 cagcattaac atatgaaaag aaggaaacct actgcaccca gcacaacttt tgcactttcg
      961 ggaagcagaa ctgcaagttg gttttcctga cttttttaga aataacaata tattttcaag
     1021 cgaattcaac tttcaagtga tgacaaacag gacgggacta aacctcagcg g
//
LOCUS       KCLA01001484             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24157upu ultra-conserved element locus uce-6256,
            sequence.
ACCESSION   KCLA01001484
VERSION     KCLA01001484.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24157upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-6256"
BASE COUNT          283 a          235 c          196 g          232 t
ORIGIN      
        1 agctgtagaa aatgctgatc cgagaaaaaa ggggggaagc ccctttaaca aggcatgagg
       61 gtaattcaaa gccaagtact tttaaacagc acttaacaag tccctagagc ccactcaaca
      121 gtgggccacc ccagaagtgc catcttctgc ccctcaacag cttgaaaaag tagtaattgc
      181 aactccattt gcattttcct tctcaacttc tccatgttca tcattcagca acacagaaaa
      241 aaaataaagc caaagcaaag cagcaaagga cagggaaccc ctccctggtg ccttgatatg
      301 gggagaaggc agtaccccag tccctctgcc tgcaccttcg ccatcgcttg ttttgtacat
      361 ttcgttccta attatgttgc atctattgcc atacacttaa ttagctgcat taatgtgatt
      421 tcttttcaca tagtcaagca attaagagct atgattgagt ttcattcaat tagcctcaac
      481 aaacatgcta attgatgtcc cagatgcaaa tgaggtgcaa tgagagaaac ctgctagcaa
      541 ttgagagttg tggcagggag acccacagct cgcagcttgc tgacagcagc acagcttaac
      601 gcagctccca ccttctgtag aactgctgtc agaggcagca ggggagatga gccattagtg
      661 cctcgatcgt cccaaagaga ttcctacagg aatagcgggc ggtgccaaat caagtcggtg
      721 tctccaattc taagaagcag aggagagcac agagttttcc tgtagcacca atgccaccat
      781 tgcttcagct gtggactata aaaagtctcc atctcatctc caaatttgaa atactacaca
      841 ggttatggcc tgcagttacc agtaactggc atcttcatct tagtcagctg tggggcaacg
      901 ttgcctctac aagttaaggc cagaacacat taatcaatca ataatc
//
LOCUS       KCLA01001485            1047 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24173upu ultra-conserved element locus uce-3166,
            sequence.
ACCESSION   KCLA01001485
VERSION     KCLA01001485.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24173upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1047
                     /note="ultra-conserved element locus uce-3166"
BASE COUNT          241 a          269 c          256 g          281 t
ORIGIN      
        1 cctgcaatca gttctagccc aagatcaggt ctcggttaaa agggtgcgtg tgggaggccc
       61 ctcgctcctc tctgccacct gcacagcact gccctgctca tgcaaactag cacgggatct
      121 gtcaaatatc aaataagaat tttgttgctg aagccctggg aaaattgaca ggcagcatgc
      181 aagcaaacat taaatcaata gcggctaatt tcccctggga aacctgtggt gttttctcat
      241 caaaatcttt aaatccttaa agaaaccata aaagctttac acacctcgcg ctggttaatc
      301 tggttagctc tgcatcgctc agcgcaggct gatcacccgg cagccagcgc aatacccagt
      361 gctgatcacc gcgcaggccg cgtgataccc agcgcccccg cgctgatgta ttgtagcttt
      421 gttagtcact gtggctcctt ggtaaattca tttggagtcc tccggggttt taaatctctc
      481 atttggccaa caacgaggtc tgaaaagatt gcagttcatt tcgacccaca gtggatggaa
      541 ggctcattta ctggctgcag gcaactcaat caggctggcc gctgatgagt gagtgacttg
      601 ttcagactgc tagtcaatat gtgtctgctg tgatagaatg tcagcatctg ctgctgctcc
      661 tgtctcccac cgctccggct tttttcattt ggcctgatca atgttattaa aaacacctag
      721 gagttcctta actgcgctgc cacttgaggc ttttctttct ttcttgtttt cagacgcgac
      781 tctgtattat ctgcaaacat gtgcagatga tgctcacgga tcgatgttca caccagctgc
      841 aggtgcgggg cggcacaggg gtacccgtgt gctcaggcag gtggcttctg tacaggagaa
      901 ggctttaaag tggcatcacc ctgctctgat tcttgtgtgc gcgatgccct gaagtagccc
      961 ggacgggagc ttttcagacc tgtggtgatt actctgggtg aagaaatcca aaaataaagc
     1021 ttctcccctg gaagcgatgc cagagtt
//
LOCUS       KCLA01001486             797 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24188upu ultra-conserved element locus uce-2353,
            sequence.
ACCESSION   KCLA01001486
VERSION     KCLA01001486.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 797)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..797
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>797
                     /note="ultra-conserved element locus uce-2353"
BASE COUNT          235 a          194 c          130 g          238 t
ORIGIN      
        1 cacaaccact tcgttttctc tctcccttgg ccacagtcca aagtgagcag aatggtagtc
       61 ataaaatgac aggcaaaatg gggtaatatt tgcaagcaaa agttctgttt ataagatggt
      121 ctgttctgaa actgcacggt aagatttgca tatccctcaa tgaaccatct tctgctttat
      181 ctgtcaccat caggtaagat cttaagcaaa actttatcaa agtaactcac cactttcctg
      241 catgctgatt ttacaaaacc ctgtctctga atgttgttct acatgatgtc atcacactgt
      301 aactcacttc atttacagta tctgtttccc ttctacttac aagttaatat aactaatttt
      361 tttaactgca cacaggctgc gagacacatg tgcacagcaa atggaatctg aacttagttt
      421 aacagcctca tttattcctg atggtttaaa ttatttcatc acaattaatg acaccccctc
      481 agcttcctgt gcagtgctgc cagatgttca gagaccacaa agccactctc ttctttgacg
      541 gctagtgaca agtcgtcctc tgaaggacgt tccctcagtg cacaggccgg atgacacctc
      601 cattgcttag cacctctcta cctcccccag taaccatggt gagagaaaaa agaagacacg
      661 agaagccagc cagtgtatta gtaaggacaa aataaatgaa gtattctgat cttgaaggat
      721 cttacctcct cctacaattg tttgccttgt ccttcaagtt tctctcaaaa ataacctgta
      781 ctttcttaaa caataaa
//
LOCUS       KCLA01001487             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24203upu ultra-conserved element locus uce-3636,
            sequence.
ACCESSION   KCLA01001487
VERSION     KCLA01001487.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24203upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-3636"
BASE COUNT          238 a          170 c          183 g          304 t
ORIGIN      
        1 agggtgtttc ttcctttctt ggaagttaaa tgaaggaata actgtttaag agaagaattt
       61 atagtgcagg taaagtgtag agtgcttaca gcaatttgtc aaatagttgg aggctcattt
      121 aatccctgtg taacttcagg taatgattca gcccatataa acaggagtcc acttgtgtct
      181 agtcacggta gacacacagt tagcgtgaat tccctctcct gagtgtgccc tgctgtgtga
      241 aggttctgag tttcctgggg ttacatactg aactgcaaac acattgtcag attagagcag
      301 agtcaggtgt ttgcccagta atgacatcag cgtaagctgt ttatcacatc cagttttgct
      361 aatatccttg aagaaaactg atccctgtta ctaggcttgt attccatgcc attactttca
      421 gttgctatag ctgtacttaa gactttagaa accattgctt tgcccatgcc tgctcctcac
      481 gtgtaccgat tgcttatatg ttctgcaacc tttcctcttt gttactgctt tcctttcact
      541 ggatgggatt ggttccctgt ggggtcatat tagaccacag gaaatgtctg ggtaacacat
      601 gaagaaatgg aaaatcttac agccacacag caaacggtta gtttatagcg ttgccacttc
      661 tgttccttag agtgcttttc ccactttttg aacatttgaa tcaaatgttt ggtttctttt
      721 ttcctcaaat taatgtttta aaactctgga tcattgcttc ttctaattat taatctgcat
      781 cttggtagtg gtttttggag gtgaaaaatc aacactaaga ttgcaaacaa aactctgatc
      841 tgtagaatgg agctctgatt tgaccattgt agataaatga gattatttgt ggaaa
//
LOCUS       KCLA01001488            1031 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24219upu ultra-conserved element locus uce-4615,
            sequence.
ACCESSION   KCLA01001488
VERSION     KCLA01001488.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24219upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1031
                     /note="ultra-conserved element locus uce-4615"
BASE COUNT          246 a          200 c          259 g          326 t
ORIGIN      
        1 gacagtggaa gtgcatgatt tgccttgcta ggttacttca ccaggcaagc tgtgttttaa
       61 aaaatgatac tgaaaagcat ttctgttggg gaaagatgag tctggatggg agctgggtat
      121 cgctgttaat tattctgctg atctcactca ggttttgagt cttctgatct cactagcaga
      181 ggggcagccc tgattttggc acgtatgtta cagttactta taaaactggg ctcacagatt
      241 gctctgaagc ttttactgct cctgcagaac atttccatag ttccagcagt ttgatcacaa
      301 atgtcacttc tctctcctta tgctgtgcag gttgataaaa cagttgccga gctggagtcc
      361 ctaaagaaat tattaattat ctggttaatg tgcatcaggc tgtgggagtg tgagattaat
      421 caccagtgct gggatgagtt gctgaagtgg attttggttt ttcgtctcct gtcactcggt
      481 aatggctttt ccttccttca ccatcaggtg aacaggtgcg gagatgctgt attttcattt
      541 tcctgtagtt gggaacagcc ggtgaccagg agatgccttt ttctcagtcc tgctgcatga
      601 gcagtttaca acatggagca ctacctgctt tggatgttcc agctgtggga gatgctctta
      661 cagcacagga ctgacctgag ccttcccaga taaacatatt tgaacacgtg cttggggagg
      721 ggtgccagca aggaatgttg ggctgagctg ggactagctc ttctgtgttc cccaggtgtc
      781 aaagaattga cttgtgtctg gatatggaat cacaacttga ctccaatctt gaacgtgttt
      841 atagcacaga gaatttttca gtaggtgaac tttcagcgtg cctctcattt tgtgtaacaa
      901 aggaaaaagt tctttattgg agtgatgtta aaggcggttc ttgtagctca gtctttagta
      961 gcattattct taaagccagt gggatgcata tatacttagc tatgggagca agagtcagac
     1021 tcctttctgg t
//
LOCUS       KCLA01001489             947 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24233upu ultra-conserved element locus uce-7379,
            sequence.
ACCESSION   KCLA01001489
VERSION     KCLA01001489.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 947)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 947)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..947
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>947
                     /note="ultra-conserved element locus uce-7379"
BASE COUNT          226 a          246 c          276 g          199 t
ORIGIN      
        1 tctggatcat cccctgagcc agaaccaccc accctgggag gcgccggggt gggagggaat
       61 ccctgaatct ctccgggacg tgggtgataa gacgctgtca gagctcagcg gctctgagct
      121 cactgcctaa gtgagacgtt gacagaaaca aaagaaagat ttctcccccc tggaggaggg
      181 cgagggggga gcgggaggtt tgcatacatt tcaagcctca gccgaaatac aaagtgcttt
      241 ttgtgaacgc gagagaaaag gacgtgaagc aggcagagga ggaggaggaa gagcagggga
      301 aggatgcctc aatacaaaaa agcttagcct gataaaatat ttaggacggg ctcacacatc
      361 agaatattaa tgctctgcat tccttgcgct tgcactctgt tgatcttcat tctccagtga
      421 ccttgtttac agtatctgaa tttgcagtct gcattttaat aaggccctga gagaaggtct
      481 gagacacagc gtctcactga accaacttca aaaccctcct ccggctggtt taaattctgg
      541 aggatgggat ctggcttcga ggtgcctagt gcccacccag gacagaccct ctggagagcc
      601 cggctgctgc ccaccctggt cagactggga aactggggca ccgtgtagga gcaactccat
      661 gcaattaatt aattttcctt cccaccttgc tccaaggctt ggaggaagcc cagcctcctc
      721 tgtggggtgc aggcagcctc tttttcccct gccagcacca gttgactccc gggagattga
      781 ctggctgctc ccaggggctc tgcccgtgca gaactgagca gcaggaggtg atggggagca
      841 cgatctcctc agcaggtaca ggagggttcc ggaggtggcc gctgcctcct gcagacattg
      901 ggagttcgaa cctgaattgc gaaggggtct cagcaggcag agcccag
//
LOCUS       KCLA01001490             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24247upu ultra-conserved element locus uce-1207,
            sequence.
ACCESSION   KCLA01001490
VERSION     KCLA01001490.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-1207"
BASE COUNT          281 a          205 c          178 g          252 t
ORIGIN      
        1 cagtgggtga atccagattg tatgtttctt aaggtaagaa gacacatgct aaagaagaag
       61 acaagctgtc tcctagaata ttgaggacga tctcagcaag gtttgggacc atctgaacct
      121 gcaagacatc ttcattctga aaaggttata gcactggtga ctgctctcta gacaaaagga
      181 aggggttcct cttcaatatc agaacacact gggcttctcc ttcccagact ccctgtgact
      241 ccaggctctg gcacagatct tctattgcct atccacagct gctgcatttc agctccaact
      301 gcttgcactg acactcgcgg ttaagtcgct gatctagaca gagccacctt aacaggaatt
      361 ttggatgggt cttagtgaag gggaggaaaa aagaggacat aatgtttaat tataagaaat
      421 gattgaaata ggcacagaca taccccgggt gcctctgcac tgcagcaagc tctaaacttg
      481 ttatcgttaa tggtttaaat ttcactgtgc taatcatttc aggacacaag cctttcttga
      541 taatctaatg aattattcca acatccttca gcaaaaaaaa tcctccatga cagcactaat
      601 tacaagacgt tttcccagtg cttatgtaaa atatgacaga gcagcagctt agggaattgc
      661 agaaaactgc ttctaatttc cactgagaac ctgacaaaca cctctttcat ctctcccagc
      721 tctcaagtaa gatttaactt tctcatttag ttaattaccg agtgagaatc atcattttcc
      781 cggatcggag cggcacagag cctttatcgt gttaacttgt gaacttgatc gatggctgct
      841 gctaaaactt aataacttca ccccctggca aattgtaaga taaatataat aggagaaact
      901 ctgacagtaa aaacct
//
LOCUS       KCLA01001491             193 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24262upu ultra-conserved element locus uce-7659,
            sequence.
ACCESSION   KCLA01001491
VERSION     KCLA01001491.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 193)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 193)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..193
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>193
                     /note="ultra-conserved element locus uce-7659"
BASE COUNT           63 a           43 c           25 g           62 t
ORIGIN      
        1 ttttcatttc gttctgcttt atctatcaaa aatatattaa cccaaaagcc tgctccatca
       61 aagtctcgat tccatgaaca tttaaagata agccttatct tattactagt gcattaacaa
      121 cataaatcta aagggctact gtcaatcatc ttttctcaaa atagctttgc agagagcaag
      181 actgggacct cgc
//
LOCUS       KCLA01001492             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24277upu ultra-conserved element locus uce-3314,
            sequence.
ACCESSION   KCLA01001492
VERSION     KCLA01001492.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24277upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-3314"
BASE COUNT          199 a          114 c          141 g          220 t
ORIGIN      
        1 ggtgtgactt tgggaacctt gacccttcag atctgagcta tggagttgat atttcagtgt
       61 ctgaagttaa tgtatcctta gggctagctt ggtcatatgt aggtgaggtt ctccttgcag
      121 ctattctgta ctttaatccc aatttgtgga attgaaacca ttgcaatctt aagtgtataa
      181 tttccttcct attacattat ttcttccagt atgggaggta cccagtgttt gtcatttaag
      241 agtgtcatat cattacattg catattgcag tgtaatgatg tgaaatgatt aaatgacaaa
      301 atgccagttt gctgccaaaa atcctaagta acacactttt atttgtggag gggaaagcta
      361 ttattaattt ctgcaagggc tttgccagag gaaataacat aagctcactg aaaggggagg
      421 tgagtttaat tttcttataa tttgaacctg agtgctagga gtgatgccca catctagccc
      481 tcactgcaga gcatttctcc aatgccaaca gtatactgcc atacattggc ttggtctgcc
      541 atcaaataat agaaggagat aacaaaaaga gaacaagctg acattgttac agagggaaat
      601 attcatctgt gaagaaagct gttaagctgt tctgttcaat attacttctt agtattagct
      661 tgctagatta aaga
//
LOCUS       KCLA01001493             874 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24293upu ultra-conserved element locus uce-4313,
            sequence.
ACCESSION   KCLA01001493
VERSION     KCLA01001493.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 874)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..874
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24293upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>874
                     /note="ultra-conserved element locus uce-4313"
BASE COUNT          258 a          192 c          142 g          282 t
ORIGIN      
        1 aataaacgtg ttctgacata gaaattaaaa gctctgaaga ttaaaaaaaa taatccatga
       61 attcaataat tcctgtatgt gactgcaaag tgagggtcaa atcctcagct ggctcatcct
      121 gactgatttc tgcctctcct gtaggtttcc tttccaagga tgatactata ccattaaatt
      181 cagcacccct tattaaaccc agtgagccat gattccaagt atcaaagtgt tcaaattaca
      241 gcatcctcct atttttccac atcttttcat actctagatt ttacacagca tcagctgaca
      301 caggaaatgt tgtcttactt gggcaacctt gttctcctag cctgccaact gctttgagct
      361 aaacaatcaa tgctgtcctt ctcaactttt tcctttccaa ttaattaatt taaattgacc
      421 attaagtcag cagagttttt gattgatatt ttcattaaca accctctcat gcagacctgt
      481 ccaacaccta agaaatgtat gataatgtcc aatctgcatg aaggggtctg aacatctccc
      541 ttcacctctc agtgctagtg agttattact cgaattgtgc ttgctgtttc attgagtgta
      601 atttgaatac agattagctg ccccagtgtt ccagagcttt ggcattatca ttactgggga
      661 cagtaatttg actgatgaac acacgggtta tcacaaggtc atcaccttca cagtattgga
      721 atggtccatc gtcccaattt tggagggaag gaggctaaac ctttcaatag caaaattaag
      781 tcttgtaaat taacttgtcc gataacttat tgaataaatc ctttactaat taaagaacca
      841 ataggcccct ttgttctcag atcttcaaag gctt
//
LOCUS       KCLA01001494             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24309upu ultra-conserved element locus uce-1136,
            sequence.
ACCESSION   KCLA01001494
VERSION     KCLA01001494.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24309upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-1136"
BASE COUNT          207 a          107 c          105 g          174 t
ORIGIN      
        1 aacatcaatg tgctaaatga tgatagaaaa ggcaaaactt cacagaaata cataggtgtc
       61 tgttgtacac aaaaggcaaa tagctatttt gaactgtaaa gactatttaa aggtttagtg
      121 tacaccttgg attcctgctg cctacataag tactgagacc taaatccact gcatactgag
      181 actaactgat caaagcagta gttaaatcta tccatggaaa atctaagtag tctttggagg
      241 gaactctttg aatgcagatt agtgatttca ttgaagtagt caatcaactg cttttttctg
      301 gttgttaaaa tgccactgag tgaacacagc agataaaaaa atgatgagca aaaataatat
      361 tttaactaga acaaacttgc tatttgtaga ctggatcaca tgaatctgct tcagtcaaga
      421 tcatttctga ggttgctaca ggaatgactc ccacaaaggg actaagttta atcatccaat
      481 cccagactgt attgattttg gaactacttt caatgactat ataaataagc catttctttg
      541 caactgtatt tggagtcggt catgaaccca aaaccttcac aacctggtcc aaa
//
LOCUS       KCLA01001495             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24323upu ultra-conserved element locus uce-5037,
            sequence.
ACCESSION   KCLA01001495
VERSION     KCLA01001495.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24323upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-5037"
BASE COUNT          185 a           83 c          100 g          192 t
ORIGIN      
        1 ataaatgaag tttatgataa agctgtagct gggagatatt tagttgcata cctggatact
       61 attaatctac taatattgag taactgttct atatgtccct agatttattg aatgtaatat
      121 ctatatgtta aacagttttc tatggtattt aaaaattgac atttcaaagg gtataatagc
      181 ataatgaaat gtaaactgaa agtaggaatg agttaattag actaatgatc ccttgactcc
      241 tttattagcc agctctttag aaattgggat tagctttgtt ttctctgctg aataaagaca
      301 ggaaggatga tgttgattct agcaaatgac agcaccaaaa gaaattagtg ttttcctgtt
      361 tgtaataggt ttcatcgttt aagataaaaa tttagcctac ctcacgcata cctaatttga
      421 ttgctctttg agttcagttc acactagaag agagaaatca ggaaaataac tgaagaatgc
      481 ctactgattt catactgtga ttttaaaggt ggtccacctc tgtgttatct ggacttaaga
      541 ctacacttct tcacgcaaac
//
LOCUS       KCLA01001496            1125 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24338upu ultra-conserved element locus uce-7079,
            sequence.
ACCESSION   KCLA01001496
VERSION     KCLA01001496.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24338upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1125
                     /note="ultra-conserved element locus uce-7079"
BASE COUNT          288 a          257 c          256 g          324 t
ORIGIN      
        1 cagtaacagc atcctcacga ggcaccccac gactctgacc tctgctttcc acttcccact
       61 gcctgtactg agcagtcttc ctcacgcaac tgcccaccct ctcccacatc agctcctcct
      121 ttttgtgagc cctccctttg cttttccctc ctcctcttta cttccacggt ctttttaatg
      181 gttctggttg gcatttcgta ggcagaggcg catatgtcgt tcagggtgca tggggtgggc
      241 tgcgtacctg tgagctgcat tcgtgtttgt gtgcctgtgc aggtatctgc acagcaggca
      301 gcagaggcag aggagcagaa gacagtctct tgtataagtg gcttgagaag ctgagcatga
      361 actctttatg gctgtgagct tgtctgtatg gagtgtgtgt agtcatgagc acttttgttg
      421 tgcagccaaa aaagtgctgc ctctgcagtg aggtaaagtg ggagataaca ataaattttt
      481 tactgctggc tggtggaggt gtttaggatg tgttttcttt atatcttcat ccgcccctaa
      541 ttgaagatgc tttaaaattg aatgactagc agtcaaaacg tgtttgcttc aagctgagaa
      601 gaaaaatgct ggtgtctctg cttccaaact gattgcgctt tgtacacaac tgacagccac
      661 agtcactttg agtgactgat aagtgggaag ctttgccact tatcaaggaa tgcacgctga
      721 aaagaaagga ctggagccgt tcagatgctt tggcatgttc aaaataacat ctcacatcag
      781 tcagactcag aggcactagg agacatttca aaataaactt tctatctatc tatctatctg
      841 gaggcaaaga ttcaatttaa cagacaaatc accgtgtggc atcacattgg ctctgaaaac
      901 gagaacatca ttataagggt caccagttgc aaaatgactc aactgcataa tttgagagca
      961 tttattgtag ggtctcacct cctagaaccg aactaaatct gagaattcac aactgcatat
     1021 cattctggtg ttttctctca attggggggt catccctttt ggacaaataa tacctggttt
     1081 ctatagcatg tgacatccag agggatccca aagagaaggc gactc
//
LOCUS       KCLA01001497             951 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24353upu ultra-conserved element locus uce-3560,
            sequence.
ACCESSION   KCLA01001497
VERSION     KCLA01001497.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24353upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>951
                     /note="ultra-conserved element locus uce-3560"
BASE COUNT          309 a          195 c          181 g          266 t
ORIGIN      
        1 gctcaaggct tgccttaacc acagcactcc tgttggcata aaagccctgg accagccatc
       61 cagatgacaa gtccctttct gcacaccttt gtggagttat ctgtttgcaa aaacctcctc
      121 tgtgtcaaat aggttgaaga aaacatgtgg catagaaagc ctctgaaaag cagggaggga
      181 gaggaaagca atggaataaa aacaagatcc ccacacatct tatatgctga agaaataatg
      241 tcttttctaa attacgtgca gacttgtttc cattttcgtt attctttcta gggttttttt
      301 ggaagcgaca gaaaatgagc ataagagaca aaaaagtact tcgccctgca ggaatacaaa
      361 aattgtaaaa gcacaggcag cactacagag gagcagtgcc attcactcac aaagaatttt
      421 gtgcatgtag atggctgatt aattgctggc ctgcctagac gaagctgcaa cgagccagat
      481 actgtcagca tgccatctgt taccatggaa atgcacaatg ttcctgtttc tgacaaaccc
      541 ttgaatactg gatagattgt gccatatgta aataaggcaa attagttttc ctatatcttc
      601 cagacaaggt tagactaaaa gaaaatatat ctgtttaaac atactgtaac ctccaagatg
      661 tgaactgggt aaaccccccc ataaaaatct cattcaattt gttgttagaa ctgaaacagt
      721 gtggactagc attaagaagc ataaaattaa ttcccgacca gcaatgttta caaaagcagt
      781 acttagaaac acgcatattc tggcagcacg ctacagtcat cattattatt gtatttttgt
      841 tttttttttc cctctctccc cagttgtggc actgctatcg aaacaataaa tagaaataaa
      901 gtgggaactt tctcatttgt atagtgcagt ttggatcatt tagccaaaac g
//
LOCUS       KCLA01001498             994 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24368upu ultra-conserved element locus uce-2887,
            sequence.
ACCESSION   KCLA01001498
VERSION     KCLA01001498.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24368upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>994
                     /note="ultra-conserved element locus uce-2887"
BASE COUNT          338 a          191 c          175 g          290 t
ORIGIN      
        1 atgttcagtt tgtctctaat gcgaagggaa aagtaggaac agttgcagac ttcgaacaat
       61 gagggaagac aaaatactat actacccaat gaaaccacgg tatttctaca tgaacagttt
      121 tggtaaaaca tcagttcttg aggctttaaa ttgcatagaa tctgaaaaat attaaccttt
      181 cattggaaga aaatccaaaa ggtaaaatac agttcagcac ctattaaaaa aagtaaaaaa
      241 acagtgctta ttaaatgcag gaaataaagg acaagcaagt tcttgcaaat taaagatgtg
      301 gagcccagtc atttcaatcc ctttcaatat gaaacaaatc actcacactg gtcacgaaga
      361 cagctccctc tacactcaaa ttattcactt gaagataagc tcccatcaaa ctctttaggg
      421 gtttaactaa tttactgcac agatacggca cgtctgttgt aataacaggt aggatgtatt
      481 ggggtcgacc atttatcaga attagacttc ttttttcaat tcgcagtgaa ttatgctgcc
      541 tacactgctc ctctttctca gagcttccca tccccttacg gcccctaatg tggcaggcaa
      601 acaaaattga cagtctcatc ttgtcaacaa ggggtgattc tcctgagaag ccatttaact
      661 ttgcagagga agcaatgtat taatgtgcct gtcccaggaa tgttaatcat cttcaagctc
      721 tctctaactt tgacataaac aaaatcacca aatttgttta ctaaatgaat tgtaatatgc
      781 taataagaga gcatgacata tatggtaaag ccaaacagat ggtttgttta ctccactttg
      841 caactatata aatgctgcaa ttctgaagat gttagtgaga attattggtt tgttggcagt
      901 ggcaaacatg ccttttgcat acttaatcca cagttacagt ccggaaacaa tttgtctttg
      961 ccatggaata cataaaaaat attaatgctg agat
//
LOCUS       KCLA01001499             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24384upu ultra-conserved element locus uce-2766,
            sequence.
ACCESSION   KCLA01001499
VERSION     KCLA01001499.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24384upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-2766"
BASE COUNT          251 a          176 c          161 g          279 t
ORIGIN      
        1 tactatctac aaattaggat tccaaagaaa acacgtgttt aattttgatt ttaattgcat
       61 ttttacttca aacatctatt tttctctctg gtgcaggcag acctgagcaa tcttgcagat
      121 atcaacaaaa ttttccccaa atgccaggca tttctctctt ggtggtgcct ggctctgcga
      181 gcatttaatc tgctaacttt gacagaaaaa gctgtataat ttctacagcc tgcttatgtt
      241 taaatcaaca aatatttact gcacactata ttttaaagga tgcaattatt agtgtacctc
      301 tgtttgatta ccagtgacac agtaataata ccagcagctg ctgaattgta agtgaaaata
      361 accctttgtt ctcaatctgt agactataac agcactcatg gggacaataa cctatgaaat
      421 agattaaaag cctgttaaat gctattttca gcttggcaga tcaccaaacc ctcgcttacc
      481 cttaagctct gtttcctttt aaatattcct tttagtatag ccatgtgaca acagtaatgt
      541 gcggttttac agtgattaag taactgcaca aacaagaggt tttaggttta taaactgact
      601 ggtgctgctc tcacaggtgg aaaggactct gttccagcac aggcactgag ggttctggga
      661 gaggctataa tggtctaatt tacagatttt cccctctgtc tagtgacttc agactgaaga
      721 aggtgacact attggtttcc tatttctggc tggcagtgtt gatccccccc tcctctctgc
      781 ttcacaacaa cagattcaga ttagcgggga aataatattt attcacggaa taattctgag
      841 gaagtttcca acatgatgag tgctggg
//
LOCUS       KCLA01001500             694 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24399upu ultra-conserved element locus uce-7552,
            sequence.
ACCESSION   KCLA01001500
VERSION     KCLA01001500.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 694)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..694
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24399upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>694
                     /note="ultra-conserved element locus uce-7552"
BASE COUNT          203 a          130 c          137 g          224 t
ORIGIN      
        1 aaaaataaca atgggactga tatattttta agttgttaga gggttttttg tgcttactgg
       61 gaccctgagt actttccgga acatacttgg tgaacgccag aggtgtgtag tctcactttt
      121 cttgccctca gttgctacat cgcaacagtc ttgatcacta gcaacggctc aagtgttctc
      181 agtctctttt tcatcctgta cttgaaaatt ttctttcatc ttttcagatg ttcctaaaca
      241 tggcaacaag catggctctg caacagatgc cattctttcc aggtctctag gtaacatttt
      301 aacctgtgta atgttcacag cacagcttcg tgagtaatat tccaagaaat acgctgccgc
      361 ttgttaaaaa ggatgggacc ccagagatgc ctttaaatat gcctgtaaag tgagaggtgc
      421 caagagaaag ataatatggc tgattatagt tatttacctt acattttcat tcgcccttaa
      481 ctgggtgtaa tttaggggca tgaaatctct tattggaagt gtatttgcat taaacagctc
      541 taagcaacca tgaaagtgca gaagctgaaa aattgacaga ctgggttcct agaatcccaa
      601 agtagcattt ttgtaatagg catacaaaca aatcaaataa acatgttttg cttcaacgat
      661 ttaaagaata tggtctttgg agtaatttgt cttt
//
LOCUS       KCLA01001501             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24415upu ultra-conserved element locus uce-4504,
            sequence.
ACCESSION   KCLA01001501
VERSION     KCLA01001501.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24415upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-4504"
BASE COUNT          281 a          147 c          131 g          266 t
ORIGIN      
        1 tcattattaa actttatttt aatgcaatgt gggatcttac atcagtcctg actaaacaag
       61 aagacatagc atattctgaa atagaaaata aaataatgtg aacgtctgaa tcaccttgga
      121 gatgaatcat attgctgtaa aacaaataat ttacatttaa ataacttacc tttttttcac
      181 ctaatttaaa agtaatcttt actctttctc aactaagccc caaatttatg agctagtttt
      241 atcatatttg tgcaataaaa ttgaaaattt tagatatggt aagtaatcaa ttttagtctc
      301 ctcatctgtg tttccaatct cattacagat tgcaattttc agtgcagatt acatgatgac
      361 ccatcagtgg ctttgttgtt tctgaattac cgattcctcg cctactgcca gataagaaca
      421 aagcctatgc atcagtctga cagcttgcaa acagaaaatg ggcttgtagg attggattta
      481 aatcccaggt gtaggggata attaccacat cagtcatgca gtaactgaaa aatggtattt
      541 caacaagaaa aattacattc cttttatagt gccaacagaa atcattattt gaggcttcac
      601 actgattcag tgtatcatta cacgtgcact gtactcatta aatgtaatgt ttgttaccac
      661 ctaaaaaact tattgtttca gatacttttg tggctgagtt agctcaaatc aagatttgtg
      721 aaacctcgac aacatggagg tcattcaaag gtataatgta cattatatga gcagaacagc
      781 agcagagctc aaagcattca aaacctcctt tgctcgaggg aaaaa
//
LOCUS       KCLA01001502             392 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24430upu ultra-conserved element locus uce-5855,
            sequence.
ACCESSION   KCLA01001502
VERSION     KCLA01001502.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 392)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..392
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24430upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>392
                     /note="ultra-conserved element locus uce-5855"
BASE COUNT          118 a           80 c           75 g          119 t
ORIGIN      
        1 ttcccctgca gaggaaacct cccacttctg gcactttgac acattgctga ctgttcgaga
       61 acatggggcc cctgtttact gctggttctt gagtcttaaa cagccctaca ctgcttttat
      121 tataccagta attacactta atgtaactgc atttctagta cgcttggcta agctctgaaa
      181 attaagtaga gggtactttg ttataaaatt caatgtaatg agctctggtg ggacagggtc
      241 tgttaagttt gaaattgcct caggccattt ccaaagaact tcttaaaata tttcacatct
      301 ataaaagttt gtaactagat aaatagccaa aggtatggtt gagaagtaaa ccacacagcc
      361 ccacaatatt cacgagatga aatgtggaca tt
//
LOCUS       KCLA01001503             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24446upu ultra-conserved element locus uce-1886,
            sequence.
ACCESSION   KCLA01001503
VERSION     KCLA01001503.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24446upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-1886"
BASE COUNT          268 a          164 c          163 g          291 t
ORIGIN      
        1 caatgcaata tgcgttctgc cctagccaac catttcccat tatagtcata gacaaagaaa
       61 tgtttaaaaa tcatacaaag ttcaaatatg ttcatagaat cagtagtctt tttgtgctat
      121 tggaaacatt tcaatagttg cttttattga acaaaaagtc tacaccatct agaaaaggaa
      181 atattgaaag aaaaatattt atggaatgcc tttatcagta aatagaatta gtctccttgc
      241 atttataaat cacataaatg gcaagtgtgt tgttatgaaa catgaccatg tcttatctga
      301 agaaggaaaa gatcacaatg gcattagaaa atgcttgact ttagttagag gagtgtaagg
      361 gcataagaac agatgatggt gccctaatag ccctttttaa gaatgacagg gccccgccat
      421 tagcatcctt ttatatcctt ggaaattgct catgcctcgc ttttctggtt cctatcttcc
      481 tgactctttt ttatttctct ttcaatttca tccgcgctcg gataagcgca tgctaacaca
      541 atatgattga gctgtaaaat ggaacgctgt cgcctctaat ctcttttatg tagatatgga
      601 ggtacttcca cactccactt cattctctct ccattgttgg cctttttaga atgtgttgcc
      661 gagtaatgga ggctcagtca aatattagag ctaggtttca cagggtgtga taagaagatt
      721 atcagcccag cagtcagatc tattgttgtt ctttgtgtca gattaaaata ttccgaggta
      781 ctgtaacttt gttagtaaaa tacttaggga gaggctgatg ctgcttcatc tcctgcccta
      841 ttaactagcc taaataaatt gtaaatgtat agcctttgca agacgt
//
LOCUS       KCLA01001504             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24462upu ultra-conserved element locus uce-655,
            sequence.
ACCESSION   KCLA01001504
VERSION     KCLA01001504.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-655"
BASE COUNT          207 a           90 c          142 g          253 t
ORIGIN      
        1 aatgcttatt ttattacaag cttcaaagag aggatttgag agcagagtaa aacgtgaggt
       61 ggtaattggt ggttgttggt gtgaacactg ccacaaaggg atggttgttt ataacaaaaa
      121 tggctggcgg tggacgttta attttttaat tgccttgtac aaattccaaa actgacttta
      181 aactgttttc acttgtattg attttatgtt atatggatcc caagctctcc cctgttaatt
      241 atataccttt gtaagacatt tgtatattgc ggaagtgttc attcgagcta tttaatacct
      301 ggcactgtta atacacagta ctttattgta cagatggttt tactgtttaa ttgtagttcc
      361 gtgtacttct tttgcctggg gaaatagggg ctggcatgtt ttttctttgt tttctggcaa
      421 tacaacatgt aagaattcaa agcattttgt ttgtagatgc tagagtgtca gaatccttta
      481 cattcgactt ttctaagaaa agcattttca gttttcgtag tgtgtgctta aggttgactg
      541 attttgttga aaatggtttc aaagtattca gaattgtaca ggactgtaaa aatttgttga
      601 caaacattga aggaaaagct tatagaaaaa agctataaaa tatatatcag gttctgcaga
      661 aaatggagaa ttatgtaata tattgtacaa at
//
LOCUS       KCLA01001505            1082 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24478upu ultra-conserved element locus uce-1419,
            sequence.
ACCESSION   KCLA01001505
VERSION     KCLA01001505.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1082
                     /note="ultra-conserved element locus uce-1419"
BASE COUNT          305 a          249 c          243 g          285 t
ORIGIN      
        1 tgatgccaat gggaaaatcc cttccaattc caaaaaaaaa gtccagctcc tgatgctctg
       61 caggaactgc tggcttggaa agattcttaa aatccaccaa aaataagata tatgtttatg
      121 ctggtttggg gttcagctct tcccagctca ccaaccactt tctagggact acttgacaag
      181 cagaaaagtg cagagtggtg ttttgtttcc tttccagatc agacgccatg aatttaaaat
      241 taatagagat gtttacttgc taatacaaac cccgcacata ttagcttata aaatatgaat
      301 atgctggttt cttgtaaaat acagccttgc catttccaaa actgcagaga ctttgggaga
      361 ataaaacaac actcaggctg cggaatacct cacatttcat ttcagttagc ctattatttg
      421 tagttttgaa actttattgg tccccgatct aatcttttct gagtatgaaa acattaacat
      481 atggtttaac acagcacagg gctggaaagt ccagatccca aatgcacatt gtatgcaggg
      541 tgacattcac actaaatatc atcccacagg gtctgtactc cattttacct gggattggag
      601 agccatgaaa gctctggaaa agttgttcat gagtctgaac caaatggcgt gcgcggtact
      661 gagatagcgg cactgtgtgc tgctgccaaa ggttgtggct caaatgtctc tctaagtaac
      721 attaaaaatc tgctgcttca tgcctatgaa tttcaatatt tatggcgttc aataaaacgc
      781 tccgctgtcg gagggagatg tgccgctgcg cgctctccga gcagatgggc tgcaatatgg
      841 cacatttaca tggaccagct gtggagtgca gaaatgaatg ctgggcagag gcaggctgca
      901 ggcagcacat ctggaatgca aacagaccca cctccgcagc cccggcacct ttcctgagca
      961 ccaccagctc tgatttaggg ccgctcacca gtgtccctta aactgcatca agaggcctca
     1021 ttaacacgag agactacagc ggggtttcgg gtctggagca tcgctgctgg gcagctggta
     1081 ga
//
LOCUS       KCLA01001506            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24492upu ultra-conserved element locus uce-1499,
            sequence.
ACCESSION   KCLA01001506
VERSION     KCLA01001506.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-1499"
BASE COUNT          297 a          210 c          200 g          297 t
ORIGIN      
        1 actgaagtac aatactgttt acataatgtc ctttagactc tattcaaaac agcaaatgct
       61 ggacgttgct gttatccacc gacaccagct aatacaggca gaaatgaaaa tgtaatgcaa
      121 agtggcatct ccttttaact tacctcgaag tctctgtgtt gtggctctga gcatcccctc
      181 tgaacttttc ccctcatggg tggtgggttt ttttttaaag atattgacat tctagccctt
      241 ggaacaaggt cttcactcct tttctcattt caagatcttg ttttgggaga gctctaacac
      301 ctgtccactg atcgcctgcc agtctgcatc tgtgcccagc tgacagggct gtctgctttg
      361 actaatgatg tgattgatgg acaaaataag gaagaacaca caaaaaaaca tttctgtctg
      421 gtctggtgtg tcagcaagcc ttcatcaagt ggctgctgaa ggtatatttt gctgcatgcc
      481 tcattacaca gtaatggcat tcccaggcaa agctgtttct tttcatgaca cgagacagca
      541 ggcagcttta tggactctgg gcctatcgag cctggaggag agaagcacta aagagtggtc
      601 atttccaaaa gtgcctcaag ttgctttttt gttgtcatga atttaatatg aatcaacaca
      661 atatgaaatg agcatgagga attttagtga ctagtcattt tttaagactg ctgtctaaac
      721 agccatcaag aaaaaaaaca ttttcttcta ccaaacctgt tgcaaaaaga agtcatctgt
      781 caattttatt acattaaaaa agtatacaga ggcgtatagt ccaaacaaat gtctgcttcg
      841 gtgctaaaca tgtggaaaat accacatatc caaagcaaaa ccaggcgagt aactggcaga
      901 ctgaatgcag tatttaacaa ctaagattta aatgactctt tccgtagatc tctctgaaga
      961 acactcttgt gcaatgcgtg tattacatta ggggactgcc tgct
//
LOCUS       KCLA01001507             345 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24506upu ultra-conserved element locus uce-5571,
            sequence.
ACCESSION   KCLA01001507
VERSION     KCLA01001507.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 345)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..345
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24506upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>345
                     /note="ultra-conserved element locus uce-5571"
BASE COUNT           83 a           87 c          120 g           55 t
ORIGIN      
        1 gcgaagggat aagccagtac cctttcccac ccacccccgt gcggtgccca gtgtccccag
       61 agctgaagga tcgcaaggag gatgcgaagg ccatggagga cgaagggcag acgaaaatca
      121 agcaaaggag gagccggacc aatttcaccc tggagcagct gaacgagctg gagcgtcttt
      181 tcgacgagac ccactacccg gacgccttca tgcgggagga gctgagccag aggctgggac
      241 tatcagaagc cagggtgcag gtagccaaga gtgtggtgtt ggttgtccct ggggtgggtg
      301 tatggggtgg gaggaaagag gcaattcaac acgcgtttgt gcccc
//
LOCUS       KCLA01001508            1064 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24521upu ultra-conserved element locus uce-906,
            sequence.
ACCESSION   KCLA01001508
VERSION     KCLA01001508.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1064)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1064)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1064
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24521upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1064
                     /note="ultra-conserved element locus uce-906"
BASE COUNT          308 a          239 c          239 g          278 t
ORIGIN      
        1 atctaggagc ggtagcaggc agtgtaattg agccgaggtt tgcaggacat agggcatttc
       61 tttgataata tatctatagc ttgtgctata ttccagccga atgcggaggg aggaggatac
      121 gacttgagga acacaaaacg agagctattt tcgcatcctg tatacaatct ccgagtggca
      181 aacagtgttt tttggagaac taccaaaaga aatgattcga gttaagcttt attttggata
      241 tattcctgat taagcctgag cacaatgaaa aaaacagtgt gaaggcacaa ttctgaatgg
      301 catctgtgct tagagcttca gaggactgct tactgtcata aaactctgtg tgtcaccagc
      361 tgggggccgg ggatttaaag atgtcagggg gacctggtct ctcagatggg ataaagatca
      421 gaaggaaagc tgtccaggtg atgcccaggc ccctgaacaa gcctatctgc actctcattc
      481 aaatgataat gagtgtgtaa atcacatctg ttccccctct gtgcctgtat ccttgtcacc
      541 tgaatagcat ccccaccagg tatcaaatga gctccaggaa atagggttcc tttttatcca
      601 acttcactct gaaatgagaa aatgagcacc ctggctccga gagccacaaa ccaaaaggga
      661 agaaggagcc ttaattgtgg tcagcgacgc caagagacta aaacaaacac tggctcagct
      721 ggatgctgga ctccctctca caacagccac atgaaagtag gttgataatt agtggccatt
      781 ggctttaatg aagtaacaca ctaataatgg cattgaaaat caccccttgt ggtctgcacc
      841 accaacctcc ttcttaccta gtggaaacat cgctgctccc acacccagga gtgcctggat
      901 atagagagac ggattgcttt acaattcaaa cacttgtcaa tgtttcattc cctgaaagtg
      961 cagtgaagac ccttatttaa tctttccaac gtaaggaaaa tttgggtgta agagtgtagc
     1021 tcacctctgg gttcatcttc cctgcacttc caccattttt ttct
//
LOCUS       KCLA01001509             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24537upu ultra-conserved element locus uce-215,
            sequence.
ACCESSION   KCLA01001509
VERSION     KCLA01001509.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24537upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-215"
BASE COUNT          181 a          115 c          148 g          198 t
ORIGIN      
        1 ggtagttttt ttgtgtgtga acaagtgcca tacaacagat tgaggctggt ataaaggcct
       61 gggactgtgc aagagcaccc cgctgagcct cagctgtgct tgcaattagc aataggcatg
      121 aaatgattat tgttgtggtg gctgatggca atctgaagtg acaagtttta tgggggaagt
      181 tgtagtgggg atgttcagca agtttctgca aaccattaat cgaaggctgc agcacagttt
      241 agtcaaagct attttatgtc attccaaagg tctcacaagg atgctgaaag aatatttttt
      301 tgctctcagt gccttggaat ggagtttttc taggtcaggg attctttact gccctattta
      361 gtgtcaaaaa tacccatttg cctcaaatta gcagaaagct tgtagttaag ggctagagat
      421 taggcacaca aaattactca gcaggtgact gctgggtaga tttgggggtt gagaagtctt
      481 taaaactgac tacaagacat tatatacttc tgacaaaaga acatagtaat cctacctgct
      541 tgctttaacc actgttgttt gtctattatt acgtgcttta atgctcataa gggcaaaact
      601 actggtgata ctactcaatt accatagtaa ctctccccta tg
//
LOCUS       KCLA01001510             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24552upu ultra-conserved element locus uce-5234,
            sequence.
ACCESSION   KCLA01001510
VERSION     KCLA01001510.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24552upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-5234"
BASE COUNT           87 a           31 c           55 g           91 t
ORIGIN      
        1 tgaatgcttc aggggtaact gtgatttaaa agtggcagta aaactaaaaa gaagacaagg
       61 aaggtagtgg ttaattgacc tttattgtgc cttctggttc atttagaaat ggaaattaaa
      121 ttaacatgat aattcagtcc tactgtgtta agactgctat aaacccatta aattttatgg
      181 ccattgattt aacatttttt ctattaacag ggtttaattt tcaatattgt catgcaggtt
      241 gtggaaagtg gtggcttgaa agaa
//
LOCUS       KCLA01001511            1038 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24567upu ultra-conserved element locus uce-5893,
            sequence.
ACCESSION   KCLA01001511
VERSION     KCLA01001511.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24567upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1038
                     /note="ultra-conserved element locus uce-5893"
BASE COUNT          292 a          170 c          177 g          399 t
ORIGIN      
        1 gatagagaag gttggctgct gaaattaggt tagttctaaa gacaattttg ctgctgtatg
       61 tttgttagca tgtttgcggc ttgtgtctgt cctttcttcc aaaggtaata ggattaattt
      121 tgtaatcaaa atatatgaaa cagtgtaagt aactccttta catctgaagg ttgttactta
      181 ttttacatat ccaaatttgt gatctcgttt aaaattccag agttttattt ttcatatgag
      241 aaataaaaac tcaaggacat aaaggaagag ccatatgtta tttaccatgt gctgtgactg
      301 ataaataaca aagtctccca taaggtcatt tcagaaaact ttgatatttg aactcagttt
      361 tctgtgtgca aaaaagaatt tctcttcaaa tagttatttt tgtatgtctt tatttttcca
      421 tattatttgt gagtttctct tggtttggtt ttggctataa tttcttaatg agtggtttaa
      481 atgtgccttc ttgttttcct tatggcctat gacctatcac ctttctgttc tgtgactggc
      541 tgtctctgct tattctgcat taggaggtac gtatctgatt gctttccagt cccctcttct
      601 tcagttgctc attcttttat tttcttcctc tttcctcttg ggttatttct ttttaaaaaa
      661 tcaaatttat tgtggcattt tgctttttta cttggtgtca ctaatatcat cattggtatt
      721 ctaagactga catgtgagtg tctagctcac atgcaaatgg ttctgcaaaa gaaagtgttt
      781 acgtataaag cagaagaatc tattcaacat gaaggacata acaaaaggaa taatttctac
      841 tgaggggaaa aaacatgtct tgctcttgta atgaagtcca atcatctttt ttacttgttt
      901 atcaatttta ctaggtattg aaacatggat tatattagca caacacacta gtaaaaactg
      961 aaccttaaat gagcaccaag ttagggtttg agaaacctct gctaacttgc cctgacactg
     1021 caaaatgccc ttgtatat
//
LOCUS       KCLA01001512            1126 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24582upu ultra-conserved element locus uce-62,
            sequence.
ACCESSION   KCLA01001512
VERSION     KCLA01001512.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24582upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1126
                     /note="ultra-conserved element locus uce-62"
BASE COUNT          386 a          244 c          214 g          282 t
ORIGIN      
        1 ggtcaaggga tgggaaccag ctgccaagcc atggtcccag cagcctggcc agctgactag
       61 atagcaacaa ccagatggta ttgctaggat tgtctctctg ctatgagttg gcaatgggat
      121 ggcacaacat ttttctgcct gactgcttcc aatcatgtct ttccccaatg gcaagcctgg
      181 gcaattacca gcactccagg aggtctacag acaagccttt accctgcaaa caaaatacag
      241 cttgtaggcc ataccagctg ccaaaccaca cacatagtga taggcttaaa gaggtctgaa
      301 gatctttcta actccatagt ataggcaata aaaatataac tgtacctgca ggaaggaaag
      361 ctgtaaatga cactgtataa tgcacacaat aatacaaact ccaacttaat caaaatgata
      421 atgacgtatg ccaatcctgc attacttgaa attgaacgat ttttacgttc tgacaagttt
      481 acagaactaa gataaatggc atgaatgatt tcaatatatg ctcatacttt tgaaccaaat
      541 ggtgaaggtt aaaatctttc ctttcaaggg cctcaatcag ccacaaagga aaacagtaat
      601 cactgtcttt tcagccagcc caaccgcatt tgtcagccct ttctccgtca atgcagccag
      661 agcaatcaac ctgccaaaca ttcagaatgg aaaaacaatc tgaaaataca gggtataatg
      721 cacctgccag tgaaaatggc catttcaaga aaagctagtg atctcagtga ccctgctgag
      781 gaggcggtgg tgcaaagggg aaagaacgcg taaaagaatt cttagtgatc tccactctct
      841 tgcacattga cacttcctta caaagcatac caattacagc ttttgtgcta cttaaaaaaa
      901 atgaaagctt ttttgggcaa aataatcacg cagagaaaca gaaagacact gctccttttt
      961 agatggattc acatgtacag cggaacagta atctgaaaac tgtatagctt atatcaattc
     1021 taaagaatgg aattcttaat gtcaaatcac taccggtgag aacactgatt aattaaaaaa
     1081 tgtaataaga gataacacgt ggttttgaga acaaatacag tatccc
//
LOCUS       KCLA01001513             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24598upu ultra-conserved element locus uce-2938,
            sequence.
ACCESSION   KCLA01001513
VERSION     KCLA01001513.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24598upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-2938"
BASE COUNT          131 a          125 c          116 g          116 t
ORIGIN      
        1 gaaccgtcag cccccagaac ctgccgggga cggtccccat cgagccagac aagagcagat
       61 ttcactcatt tgctttgtgt tccgtgcaga ggtgagagaa gagagaaaaa cagaccctcc
      121 agccttgcct ttggggaagc gggaggctac ttcagacaaa actattatcc attaacatcc
      181 aattatcact cggtccaagc cattaattat aaatcagcct cctaattggg ataattagct
      241 ctctgctact taatgtagta tgactgatgc atttggaaag aaggtaatca gtccatttgt
      301 ttagcgttag gcgaacaaat ctaactctcg tggtttaatt tcagacttag cctataggcc
      361 ccccatcagc attaaaagct ctttacagcc ccagtaattg tttgggaaac acggccggga
      421 tgggcacatg gagctccgcg gggctttcga gacagtgacc ctcaggccgg gaatgcgacc
      481 gggccccc
//
LOCUS       KCLA01001514             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24614upu ultra-conserved element locus uce-2823,
            sequence.
ACCESSION   KCLA01001514
VERSION     KCLA01001514.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-2823"
BASE COUNT          155 a          135 c          105 g          187 t
ORIGIN      
        1 tgttgttagt tttccactag cagcttgccc acaatccagc agcctacaac tctttatgta
       61 gatacgttga ataattatga agccctgagt atttatcacc ttttctgagc agtaagcaga
      121 aagaaataca atactattac ttccagctac tggctttccc aagataatta gataacacag
      181 tggactgaag ccttggttag cccaatgctg ttcaagttaa gtgattgaca tgcctctgtc
      241 tggctgctct attaaccgtt tcattttgtt gctatttgca gtttgcttgg ctaatacttc
      301 gaacaaatac agactgtttc tttagcccct tttttctctt tgaccttctc ctgcccattt
      361 tctttgagtc acttcaaact gccttgaaaa gacccgttga atgtgcacag tccatcagag
      421 tcccaggttc atcccattcc ttgccctgaa tgctttactt caaagatggg ccgcattctt
      481 taattgccct ttgaattaat atcaaagggt cacaatgcga gtgccagaag agaaagaggc
      541 tttaatgaag caaagagctg ccattcattt gcagataagc ac
//
LOCUS       KCLA01001515             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24630upu ultra-conserved element locus uce-1216,
            sequence.
ACCESSION   KCLA01001515
VERSION     KCLA01001515.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24630upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-1216"
BASE COUNT          270 a          259 c          230 g          227 t
ORIGIN      
        1 ctcgcagcca gctggctgca cccagcatgg atgtgaaagc acatctttac ccccaaagta
       61 gccctctggc tctctgaggc agccacctct ctgcaatccc acacttctgg gattggttct
      121 ctggtgtttg cagcaccttc catcagcctg tccttgagga ggccgtgatg actgatccat
      181 cagtccttac acaagagccc agaagagcat caccaggagc agactggtgc tgcctggagg
      241 gcaatgaaag gcgaagaaag atttcctctt acgtggctga aaaacaaatc caaaccacca
      301 aacctgaccc gacagaacaa aaacaacccc aacaagtacc tcgcactcag tacagccttt
      361 taaagcctca tgaatattta gcttgtcctc atgtaaaata tatgactttg tgtaaggatc
      421 aagcaaagga ggtgcatgat ttttttctga tttatgggcc cagcaacgga ttattcatag
      481 cagagcagct gtgtggaaag attcatccac tgcaaaatgt gattgtacat caggcagtgt
      541 gagggaacag agctatgact aatggctact ttacatataa atgagaaggt ttgcgctagg
      601 aactgtaaaa aaaaatacaa tcgttcagct gacaggctag gcctctttat cgcaagcgct
      661 gcacaggggc cagacagagg caggaacaag tctgcctgaa ggcgctgcct tccctcacgt
      721 cctctaacat gccataaata agacaacggc agttgaatct tccaaggacc aaatttgttg
      781 ctggtgtcaa cctgcaagct gcagtgaggg aaggcagatg tggctcctcc tggcttggat
      841 gcccctaggt gtcctttctg ggaagtctga aactcccttc gagcatcgtg ctcaaaagta
      901 gaggggtagc atgaaccagg gtgctctgca cagccccagt ataagccctt cacttctcct
      961 ccctgctgtg atcacagcct ccccca
//
LOCUS       KCLA01001516             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24646upu ultra-conserved element locus uce-1774,
            sequence.
ACCESSION   KCLA01001516
VERSION     KCLA01001516.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24646upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-1774"
BASE COUNT          180 a          105 c          119 g          197 t
ORIGIN      
        1 aaactcatct tccagggact ttgactttag aaaaagactc tgaagtgctt ttgcttaagt
       61 cattctgaag ttaaaaaaca atttgacttc aagggagata cggcccaatt ttttaaaaac
      121 ttaataggat tagtcacggg aactattttt agccaaagtt caactttatc catgtatttt
      181 aatgtgggaa aagtgtgtcc ttttccctct gctaatgttt gatgtattcc agccctcctg
      241 cgagcgtgtt tgagtatctt aggggctctg gagtggagga gaacttcctc tcggattctc
      301 tctgttttct ttcgtgaaaa tgacattcct aagctgtttc actttctgac aggaaatgga
      361 gccttgccaa aaatgattaa agtccaagaa agcataacag ttccaaagct gcagcagttc
      421 tttaggagtc ccgagtttga cgttgtgtca aacaaatgtg aaatattgtt taataaattt
      481 gaataataca gggaaaggga aaaatggttc ttggcttata ctgctgctgc tctttattaa
      541 gtctgtaaag gactgcctag ctctaataaa ttgaaatata tacataaata tactcgtgca
      601 t
//
LOCUS       KCLA01001517            1052 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24661upu ultra-conserved element locus uce-2748,
            sequence.
ACCESSION   KCLA01001517
VERSION     KCLA01001517.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24661upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1052
                     /note="ultra-conserved element locus uce-2748"
BASE COUNT          296 a          247 c          187 g          322 t
ORIGIN      
        1 tttttcagaa tcctaatgta acattccctg tgctatcact tgttaaagcc ccagatcctg
       61 aaccggtata tttggccagc aattaagaag gtccctgcct gagaaatgct cctcctcaca
      121 gaattcttag ccctcgttcc ctaatgttag ccgagccaaa tgtaatatct ttgtacacac
      181 agtgcaactg ccaagaaatc aattctgtgt gttttcctcc cttttatgct tttaaaggac
      241 cgtgataagt tttctgcctc tgttactttt acacatcctt ccctagcttt aaagcctttc
      301 ccactctcct gaaaaggaaa aaaaaagggc aaaacaaacc aggtagaatt cctctgttac
      361 tattaacacc taaaaatatg atcatgaaac aaaagctttc ctcctctgtc caatgtgatg
      421 tctttttcat gctgcctcta tgatggccaa ataattggtt gttcacttgt gtccttgtct
      481 cccccgacag ttccacagat gccctgaaca atgctccaaa gactgctttc agtaggggca
      541 aatcctcatt aatcattcct ggctgacagc acaagggaac acctgcatct ggtgcaggga
      601 ccgagcggtg gcttgtggga gcccgcatga aaaacacccc ccagttcacg ttgggggagc
      661 aggctcctaa tagccatgtg aaaaatctgt ctctcgctgg attttccttt cattaagtat
      721 ctaaaattag acctgtggct cgtgttgaga ttaaaagccc aatgtattct aagcaaatca
      781 ggaaatgaac agtactgtat gttatgataa atggctgcta aattctttat gtctagatca
      841 agcaatgtta gcattaaata ctgatgaact gtcacataat tttcatttag aaatgactgc
      901 actttgagct tcatgtcctg tggtgctcat aaatattttc ccctgctata tttcacaaat
      961 agactacact gactataccg atatttttac cagggagccc caagtgcata gtttatataa
     1021 actgtttttc tgtgcaagca agtcaacatt tc
//
LOCUS       KCLA01001518            1043 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24677upu ultra-conserved element locus uce-7534,
            sequence.
ACCESSION   KCLA01001518
VERSION     KCLA01001518.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1043)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1043
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24677upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1043
                     /note="ultra-conserved element locus uce-7534"
BASE COUNT          303 a          255 c          180 g          305 t
ORIGIN      
        1 tcttaaaata cactggcact gttggtgaaa tctttacaac aaaatactga aagaaaacat
       61 tcaatgtctt ttagtttctg ctaagtgatt cccttcaatg acgggtattt tcctctccta
      121 tgtcactatc ttttgctttt atattccccg tctgagtagt taactggctt tttcttaaag
      181 cccagagtct gatctggtat catgctgttg gatgcgtttc acacaaattc tgcctgtctg
      241 tgtgtgtgag agtgaggtac agcaagggtg cacacatcct cattaactgc tgagatatat
      301 aattaaacaa gaaggggata aagcctatgt tagcctattc tacttttcta ttacttttta
      361 aaaagctttc atatgtcttc ttccttgttt ctgaaagcta acagtccctt cttcctttca
      421 ggaaggctga catttgacag cttaacatag ctgacagggt tacccaacag cccaccctcc
      481 ctattctcaa tccaattaga cctctaatcc tccagatgaa aggcccaact actcacgttc
      541 ctcatgacaa cgacagctat tgattatttg tcactacagc taacaccttc tctgtcgagg
      601 ccactctgac agaagcaaac ctaccaaatt agacagcact ttatctgccc tggaggccaa
      661 atggcacaac aagtaaaggc taataaatgg tataaaaatg aacaaatcat aacattatga
      721 caggctgatc gttgccagta gcctcacagc tcaagcttga tgctctgtta gacccgttcc
      781 ttctcttgtc tcctccactc gtgctccaac tttgactgaa ttaaaggcca gaacaattaa
      841 ggcatttgac cagcaaagat aagctcggat agaagtatca tcaagggaca caaatgtcaa
      901 tagcagacta ccgtttgtca ataaaaacat tccagagatg caaatgctca tgactctgct
      961 ctccactagg ctgtactgac tccctttgta gagttcttct ccatcccagg cagaaactct
     1021 gggacaatta accccagaaa gcc
//
LOCUS       KCLA01001519             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24693upu ultra-conserved element locus uce-4573,
            sequence.
ACCESSION   KCLA01001519
VERSION     KCLA01001519.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24693upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4573"
BASE COUNT          176 a          139 c          117 g          177 t
ORIGIN      
        1 gggcttgctt gggattgcaa aatcaaagag ccaccttttc cctaccctgg ttactcattt
       61 gaaaagcctg tgctaagtgc cgatgatttc agtgcccaag gttctgccat gcaaatgacg
      121 gcaattaatg cctttgaaac aatttatgag ttcctgccta cttcaacacg cattagcata
      181 tacctggttt ctttaatata cactttgttt ttccaaaacc acaaacatag ttgctggaat
      241 tccatgtgga agtgcttaag gggttgaaag ttaacacctt tgtgagccga gcagcctcac
      301 agttgctgct aaacaaaagc ctctttgtag aagctttctc acaatgtttt cttaacatgt
      361 tccaagtagt tttaggcagg caactaaagt aaacaagatg ttaccatgat aaaaacactt
      421 gtgaaaacat tacagagtgc acttagtttc tttcacataa actccccttc ccttcaccca
      481 aggtgcagat ctctacccta ctgcaataca agggctgcaa gatccctcca aaggagctgg
      541 gtctctcttg aaaggataga ttgggctttt acaaggtaca gctgtggtta agtgcatccg
      601 aactacaat
//
LOCUS       KCLA01001520             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24709upu ultra-conserved element locus uce-3678,
            sequence.
ACCESSION   KCLA01001520
VERSION     KCLA01001520.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24709upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-3678"
BASE COUNT          156 a          222 c          135 g          199 t
ORIGIN      
        1 agcaatccgt ccataaatgt cacagaaaat ccccatctcc ttttattaaa cctgaaaaat
       61 gcgtataaat gtaaataaca aatgactgat acggggagag gaaccagagc gtctgctggc
      121 gtcaccctcc ctccctcgct ccctcccttg cgctctttcc tcctcgtgta atttgcatta
      181 ataaagaggc tgttccttgt cggaatgtgt ttcatccggt ttaaaatccc agggcgatcc
      241 accaggaaca gctctgggag aatccgactg tcagagccga caagacaaat gaatcccggt
      301 gtcaggagcg tgtggttcaa cgatgacaga ttgagaagaa ctgtccccct ctcgacaggc
      361 gggcttcatt ttcaaattaa taaatctgaa taaaatattt tccctttcat tacgagccga
      421 gcccagatga cagttcccgt gacaggaggg agtcgcagtg ttgatgagga gactttgcat
      481 gaattccacc tgggctgctt cagctttatt tttacctgca attccacccc tgtttacttc
      541 tctccctttc cctccccctt gccctctctc tttcatgctc ccccctctcc ttcctccttt
      601 ttcttcacct gctcccagcc cctctccagg ttcttctccg ctcctccctt ctccaccatc
      661 ccctcgtgat ttggaaggtg agccctgcgt gtcactgctg catcacaccc cc
//
LOCUS       KCLA01001521            1143 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24724upu ultra-conserved element locus uce-2698,
            sequence.
ACCESSION   KCLA01001521
VERSION     KCLA01001521.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24724upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1143
                     /note="ultra-conserved element locus uce-2698"
BASE COUNT          352 a          255 c          199 g          337 t
ORIGIN      
        1 aactactgtt ttcttcttag aaaaagctcc tgcttgtgcc aactggattt tattctattt
       61 gctcttctac atctgtggaa ggaagaaaag aagtgggctt gctagagaaa acactgttca
      121 gtcttcaggg gaagacagag catcaggaac tgttaggatg aaaatatgta cagaattctt
      181 ttcaaagctg ctcctcagtc catggtaatc acctacatgt agctcttccc tctcccaagc
      241 tggctccttg ttagtgactc tactaaaacg tatcacagta ctctactgcc taatccacat
      301 ttattttaca cattgcccta ataccaagag agtgtaagct attgttgaga taactggctt
      361 ccattagcaa ccatgtgatt ggcaggacga taaagtcttt ttccttgcag gtcagcagct
      421 ttttaagaag agggcaatcc tgctgatcca tcttttagct acagtctctc actaagtccc
      481 aaatctcctg ccttttagct ttgatacggt tcaagctttc ccccttgtat cagcccctac
      541 ctgtcatcag cttctctgta ccaaacagcc aatatcagga gtttgacctc agggcacagc
      601 ccgggtgggc aggtaaaacc tgaccactgg acctacttcc ttatctttca tatcctgcaa
      661 ttcatgaaga agtatcaaat tcaaactaaa aaacagaagc atgacctttt ataagatctt
      721 tctgaaaaag gctctgttgc ctttctgagt attcttgaaa agaactgtca tccaccctat
      781 taacatagaa atggatcaca aataaagaag atggagaaaa cactacagat ccttactaaa
      841 ttgtgaatgt ttctaatgtg tgcttgcaat actttttggt gcaaaaatgt agtgaaacac
      901 caaatacact agaattactc tacatcaaca agctccaaca gcaacccaat agagttgccc
      961 agacttctgc tgtttataat ggtaaggttc ccatggtata cagagtaccc tctgtaaagt
     1021 gtgacttgta tcaagagaat tctaaatttg ctaacacaaa ctgagagcta tcataagcgg
     1081 cataatccct attgatataa caaactcaac agttggtgct taaaacatac aaaaatgtta
     1141 ttt
//
LOCUS       KCLA01001522             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24739upu ultra-conserved element locus uce-7473,
            sequence.
ACCESSION   KCLA01001522
VERSION     KCLA01001522.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24739upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-7473"
BASE COUNT          273 a          131 c          145 g          256 t
ORIGIN      
        1 aagaatataa aaaagggatt ttttttgaaa ggaaaatttg tcctctaaaa accagcatat
       61 ttggatcagg ttcagaattt tcttgcctaa caattaaatg gaaattcttt acatttccag
      121 ttccacagca cattatttaa accttaagcc tctctaatta agaggaatca ttaaatttat
      181 tcctatagcc tgctttaaag tttatttgct aataagcaat tggacaaggg atgtgtgaaa
      241 agaatagttg aagaaaaaat ctggcagcaa aagagaggtc tggtgggtgc agttggttta
      301 ttaggcactg tttgtcatga atgggtctct tgcatgtaca aaagcaaatc ccactacctt
      361 agaagattaa ttctgaagga ggcactcgtg ggtcaaagta tacataagcg tgtgcctaat
      421 ctcagagaaa tcaggctatt ttctcacagc aattaagcaa aggtctaggg tttcacccac
      481 agtgtattta aacacaggat acaattaaac cccaaagtat taatatctgt gctgtgcaaa
      541 attgcccagg aaatagattt tgccctcttt caaacggaaa gcatggcaaa ttaaggagaa
      601 tgactttatt tgagtaaaaa ttatccaaaa ccaaatgtaa ggcattcatt tttaactgtt
      661 aattccttag gtacattttg ttttttttct ttgcctgctc acataattta cctcggaatg
      721 tacaatgttc agggatgtaa gtgatcaata ccaatttatt aaaatagctt tctttcatgg
      781 aaatataatt tctacagggt aacag
//
LOCUS       KCLA01001523            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24755upu ultra-conserved element locus uce-3995,
            sequence.
ACCESSION   KCLA01001523
VERSION     KCLA01001523.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24755upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-3995"
BASE COUNT          310 a          242 c          181 g          293 t
ORIGIN      
        1 acaatgcagt caagaacaac tgaaatgtat tcctaaaagt tccaccacac aactagcagc
       61 tgaggaaagt tttaaaaaag ggacttcccc cccaacctcg taacatcgcc tacaactcct
      121 ttcataacgg tcaggctggt agcactgact atttcatcac acctcaattt ttaaccaaca
      181 agccaaagag ccccaatggc cagtgcagtc acagaaactg tgagcgacga ggccagctaa
      241 aaggcaggcc tgaggtatgt tcttgccctt caccttcagc aagggatgat acgccactcc
      301 gtatcggcac tgcatgtgca tccaaccata cctgaccttt ccttcgtaga tctcttcttt
      361 agaagcaaac tagaagactg aattagcatg ctgtatttta ctctctccac tagaaatact
      421 gagggtgcta tttgtaattg tattctttta agaggtttgt tctctgcagc tgttttctgc
      481 ttgcagtgta ttttgtgtaa tcagcacatc atcataaata cattggctgt tcccctgagg
      541 gaagctgtca ctgtttaatt tacagaacaa cctggccaat gtgaattcta acactacagc
      601 actatggcaa gaagttacca cactgagaaa aacaggtttc tatgaatttt tatatcaaga
      661 gttggtccca ggacaattta ggttctagaa atagattgtt tttaaaagca ctttatatac
      721 tgtggaatgg attctttcgc acttacagct tcctaaggca gcaccaatct tactgccaca
      781 ttattttaaa ggtgataacc ccaacccccc aacgcaacca tcttcattct gacccctagc
      841 aaaagaaggc accccatgta ggtgtcttat gctacacaca aatttgtcaa tatttatttt
      901 gaaaatcagg aataacccaa aacatcagca ttttagttgc cttcatttca ggagaatgta
      961 ctctgtgcaa ggtcaaatgt tattacctac atgaaaggat tgctgcacac tttattactc
     1021 tgaaga
//
LOCUS       KCLA01001524             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24770upu ultra-conserved element locus uce-5457,
            sequence.
ACCESSION   KCLA01001524
VERSION     KCLA01001524.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24770upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-5457"
BASE COUNT          160 a          175 c          232 g          166 t
ORIGIN      
        1 ggcgggggcc gtggccgctg atccgttatt catgagcgcc tgcgtgccct gatgttgccg
       61 gggtcgcctt aattgcattg taaaaattgt ttgcacagga aagacgggag cagctgggcg
      121 cattatgaac gttggaagta ccagcagcag caaatcgcag actttcccag aggctatcct
      181 tgctctggcg cagcgtcggg aaagcagagc atatgttgga tgttagccgg ggtgtacaca
      241 gcgtgtccta tttattcaag gtttcctttg aagccacaac ttacaagttt gtttcttagg
      301 ggtacatgtc agaccgcatt tagcatcggc tgccacccgg atactcccgc atagcagaga
      361 ggcaacattt tgggggaaga acgtggctgc tatctgagca gcgggctgtc acttccactt
      421 aagcagcccg gggaagagcg cagaggaggc acagtggaga aactgggctg agacctccag
      481 atcgtaggct gaattatttt aaagcgcttg aaatgggagg atgaatctcc ctgtgggtga
      541 cagacagcgc gctacggggg gaaccgggcg ggatgctccg gcagagatcc ggctggccgc
      601 ggtgtttgtg ctggaaatcg cgagggccac ggttcctttc ctgcccgtag gtgctcgcgg
      661 gctttgccca ttcttgcctg gcaagagcgg cgtttaggtg cacaaaggaa acatcagcca
      721 tggatttcag att
//
LOCUS       KCLA01001525             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24786upu ultra-conserved element locus uce-6964,
            sequence.
ACCESSION   KCLA01001525
VERSION     KCLA01001525.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24786upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-6964"
BASE COUNT          214 a          145 c          181 g          202 t
ORIGIN      
        1 gaaagacaca tcaacttctc cagtgtggca cccagcctgc actgaaacta gggttgaggc
       61 aaaaacagtg gcacctctga tgattcacca gtgcaagacc ccttgaggag tatccacaac
      121 ttcagcaaaa gcattggtta tgttgctcct gtaatggatt aatcgtcttt ggtaaataaa
      181 gtttggtttg tttccctgga tttaaatggg taaattattt gaatttctcc acccccaggt
      241 gaatgattta gacggccttg accccagcct gactgcaggg attaatgtgg tataatgatt
      301 gctgaggcta tcattgcagc aggcatcatt aattatcctt attgattgga gctctcaaag
      361 ataaagcatt atgctgactg gaaaataccc tcttcctgca aggtcaaggc taaaatagga
      421 tggctaaata attgcattaa caaacaaaga aataaaaata accttcagag agcagtgtaa
      481 ttaagatcca attacagtgc tgggccctgc tggtggagcg gcactgcctg gaatgaggga
      541 tgtgtgatag aggatggggt agcccacttc ctggagggct gaaaattctc atgatgtgtc
      601 aaatcaaaca ggtcaggtgg aggaagtgat aattggccat aaattctgga gagtgtagtg
      661 gagtttaaag gtgtccctgg gatgctactg tggatgtctc tgccaccctt ttcattcctg
      721 ctatagtgag aacccaggta ct
//
LOCUS       KCLA01001526             905 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24817upu ultra-conserved element locus uce-7342,
            sequence.
ACCESSION   KCLA01001526
VERSION     KCLA01001526.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>905
                     /note="ultra-conserved element locus uce-7342"
BASE COUNT          266 a          197 c          172 g          270 t
ORIGIN      
        1 tatcacattt gtattcccat gcaagacaaa cacctaagta tataaattat aaatgctgtg
       61 aatagtttag tttatctgtt gccacagtgt ttgagtgctt ttatagccaa taatttaagc
      121 aaatcaaaat agatggagaa gcccttcaaa tcctgccaca agtcaaaggt aatacaaagg
      181 aatgccattt acacatcctg gaatgagctg tgtaagttgt ccttacatag aaaagaaaga
      241 ttcacctcct ctgctgctct tatactccac accctgcttc atttttactc ccactcaagc
      301 cttgcatttt attccattga gcactattta atatttatca cttctttccc ttcaaggtgg
      361 agatgcagat gctaatgtta gtcactttta gagctgggat tgtgttcttg tgtcagcatg
      421 ctggtagatg atgcctaaaa ctaaagttgc ctctcggagt ggttctgact caggcagtgt
      481 tgaagaaggt tctctcttcc aaggagcact ctgcataatg aaattcctgg gctgactgca
      541 caataagtgc ctttgcttca tcacagtcat gctttcttac atcattacag ttaaatttcc
      601 aggcaccaaa acctacattg accctgaaac ctacgaggac ccaaatagag ctgtccatca
      661 attcgccaag gagctagatg cctcttgtat taaaattgag cgtgtgattg gtgcaggtaa
      721 ggctgccatg gcttcctcat tcaactattc catttacccg cgatcgaaac tcatacatca
      781 taatgacagg caaataatta tacctcaagt acagaagaac ttttttcatt tgccagagtg
      841 gttaagagca atgaagctgc actcgcttct aaaatgtaaa aaacaaaccg gggggctggg
      901 ggtgg
//
LOCUS       KCLA01001527             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24832upu ultra-conserved element locus uce-6117,
            sequence.
ACCESSION   KCLA01001527
VERSION     KCLA01001527.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24832upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-6117"
BASE COUNT          320 a          204 c          156 g          300 t
ORIGIN      
        1 agcatggctg aagactaatc ttaattgttt gttggttcca ctggaggcag gtttccctca
       61 caaaagaagt ggcatcttgt agtttcaagc taagacacat tggtgtgagt agctgctccc
      121 cccgttaaat gaacaaggca gcctgagttt gtggctgcct catccagcca ggcagcaaat
      181 ccctctgtta ctcttgtggc aaccaaataa agactttaaa attattttaa gtaatgataa
      241 ggtatctaaa ccatatactg catataaaaa taaggaacgt atccacattt aaaatgcata
      301 tgctgctgag catttttact gtcatttctt taagaaaagc agatctaatt agctgtacct
      361 ctaaagtgcg cacctagcat ttttattatg tattataaca ttttgcctag agttggcatt
      421 tttattctga caagcactgt ctggagagct ctcaataaat aatacattta caattttcag
      481 taaataagca ctggacacaa atcgttatcc atacttacag ctgcccctct ctaatagagc
      541 ttttacaagt aaggtgacta ttcaggctaa tgcagtacct cagcagtgga aaggtatttt
      601 cattcattac ccctgtcaca agcacttaaa gcgcttttag gccctgttgc aaagcagcaa
      661 agcaaataag agcaactaaa actaaagttc atcaccaaag aaatctaagt taattcaccc
      721 tgcaaaactt ggaaaatatg ttgacataca aattagacca cattcaagtt ctgtatttcc
      781 ctcatatttt tacacttcca ttagcaattt taggaaggga agtattgcat tctagttcca
      841 aatgtcaacc tgaaaatgta tttcaattcc cattttatag cattgtcaaa tcctatcttg
      901 ttcatgacac tgcacatcag aaaccaaaac caaccaaata aacttgaagc cacctttttt
      961 gtgctaatgt tcttaaaaac
//
LOCUS       KCLA01001528             543 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24847upu ultra-conserved element locus uce-7364,
            sequence.
ACCESSION   KCLA01001528
VERSION     KCLA01001528.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 543)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..543
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>543
                     /note="ultra-conserved element locus uce-7364"
BASE COUNT          204 a           89 c           94 g          156 t
ORIGIN      
        1 tacagaaagg aaagcatgct cattttaagg gataaccgag aatgcccctt cttgaaatta
       61 aaaatggatg tctaggctat agatggtaga agtgcaacat ccagccccag aaaacacttt
      121 cattttcata taaatatgta gccatcattt gtttacctca cacacagcta tcaaattttg
      181 tggtgggcta taaacttgtt gagtcattag cctggctgct taatggagga aaactaaatt
      241 cctgttcctg cataatgaca cttattcact gtagacattt gcatcactag aaaacgataa
      301 aacctcatcc ttcataatga agttctgagc tgacaaagag gaaaatatag tgttgtggga
      361 cagctatgaa tataaaacaa gcttaataaa gaagtagtga caaattatat tatgcaaaat
      421 gcaatgcaat aaaaaaaatg ttactaactc gttggaaatg tcataaataa tctaaatagt
      481 ttttaactgt caaagccttg gaaaatatat tcctttaaaa aatgaggtac agaatagatg
      541 cca
//
LOCUS       KCLA01001529             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24863upu ultra-conserved element locus uce-2955,
            sequence.
ACCESSION   KCLA01001529
VERSION     KCLA01001529.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2955"
BASE COUNT          224 a          156 c          188 g          180 t
ORIGIN      
        1 tcttgctatt aattttaatt gccatacaat gattttatct gtatccatat caaacacttc
       61 gcaaatgaca gcttttaaaa cctgatggtt gagctactga tatgatagtg cctgaaccct
      121 agaagcacta catagctgag gaggagcata tgggggcatc tgtgccagcc tccccttgtt
      181 tcaattcttg attgtttact cagctgccag aagatggtct aaagccctgg ggagagcaaa
      241 acctgtttgg gccattgaca ttgagtatcc ttggtgcagg aagtcaggac cttagaggta
      301 tccatcatta cggctgcctg aaggcaggct ggagccaagg aacttgcctg agaagctagt
      361 aaaattttaa tgcactctgt agtgtggtca tgtcatactc agttatggca aataatccca
      421 gatgcctgca gaggtaaaat ggagctgtaa tgtgcttgcc tcctaacccg agctgacagc
      481 aatgatgtac gactaccatt agcggaaaat atcacttcaa ctaacccatg atccagctcc
      541 gctaagggtc acattatcca tgaggaacaa attacactcc caaagtaaat acaaattttc
      601 tgcacgaaat gggtacaaaa agaaggaaag gggagccggg cgggggcagg gggagagggc
      661 agggggagca gggagtgata cgttacctat cacaacatgc tgccgagtga caaagatgat
      721 gaaggacagg acaaatcagg ggctgaat
//
LOCUS       KCLA01001530             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24877upu ultra-conserved element locus uce-7609,
            sequence.
ACCESSION   KCLA01001530
VERSION     KCLA01001530.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-7609"
BASE COUNT          261 a          179 c          182 g          278 t
ORIGIN      
        1 ggcaagatgt tttaccctgc aatgttaagt cattttgaca tactgccatg aaatggaaac
       61 aactgctagt ttaaactcca tgtctttatt agaaggtgtg tctcatgcat cttaattccc
      121 catgtacatt ttgtccttct ctctgctccc tctcccccat tacactattt tctttacctc
      181 ggtaaagaag ggagcgtatt aagatttcct tgctgttctg catcagtggt taatgaggtt
      241 ctagatagca taatgaatat gcagtgctat tgattctgtg tgtgtgtgtt tgtgtgtgca
      301 tgtctttaat cacagctgga atgcaaaatc aggctccacc tttcaactct atctccatca
      361 tgctgagaga gtgagagaga gcgagactga gactgctaga caactcaaaa gagattgcag
      421 ctcagatgtc ctggaaaaca gcaaatccct cagacctgga agattccgtt accatgagaa
      481 ctgcagatat ttctattgtg atggcttgct ctagcagcca tctgttacac ccatttgatt
      541 aggaagtaca gttcagcttg tatgggattt tcactgcacc ttatcccatg ccaatgtgca
      601 gaaactctct ctctttatat gctaaacaaa atgtttttaa agtgctgtaa tttactgaga
      661 ctggaggcat ttaatgaaac cctaggaaga ggtcactgag gtagagaatc tctgaaaaga
      721 agcacatgag acatatgaag ggaatttgtg tccagtgtat aaataagatc aagccagaaa
      781 ttaacagtat ttagcaattc ctcatccttg ccatggagag gagcttgata tacagacctc
      841 agggagtgat gataaaatta gtaattgcct cctgttagtt aatccaacta tatatatact
//
LOCUS       KCLA01001531             350 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24891upu ultra-conserved element locus uce-2129,
            sequence.
ACCESSION   KCLA01001531
VERSION     KCLA01001531.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 350)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..350
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24891upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>350
                     /note="ultra-conserved element locus uce-2129"
BASE COUNT          123 a           57 c           65 g          105 t
ORIGIN      
        1 gttaattatt agagactaac taagtcactg aagtgagtcg tttggctggt gtctcaaatg
       61 ctgtcattta ctactacaca aatcagccta gtgatagagt gtctttaaat taggttacaa
      121 ccatgcagtt attggacagg gagtaattga taaaaccatt agtaacactt gtagagataa
      181 cagctagcaa aatcatgcaa ccataattat tcctaatgga tacatgctat aaattgtggc
      241 aagaaaaaaa atcttgcatt atctttcaat caaatgtgac agtcctggta gattactgta
      301 gactaaatgc tcgtgtatga aaaagaaatg acctaccgga atatctttgc
//
LOCUS       KCLA01001532             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24906upu ultra-conserved element locus uce-4792,
            sequence.
ACCESSION   KCLA01001532
VERSION     KCLA01001532.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24906upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-4792"
BASE COUNT          256 a          164 c          161 g          297 t
ORIGIN      
        1 taaaatacag gagtattagc aaataattat gtttattttg ttggcagagc tactccaaag
       61 gatagctcag aaagtacagt gtaatgatca tgaaagatat ttttgaacaa atgctgttgg
      121 attttggata caagccttct atttttctcc actgctgcct ttgtaaacta ctacaaatac
      181 tcagagtaag aagtgaaata tgtcatggat gactgaagta agcatgcttt tgttttgtga
      241 aaaggtgggt gtttcatccc caagcctaat tcagtagatt tatctgctac aattacactg
      301 ctttgatctc tccagaatag gtggtgtaga gcagggtgta gctgtccttt tccaattcac
      361 tcccattatc aggatacatg tctgttgatt tgtgggaagc tggctgtttt tcgttcctga
      421 caaagtccag tgattaaaat gtagtggctt gctcttgttc ccctgataaa ggtgacagct
      481 gcagagtttc cagtgttagt ggatgtggtc catgcagatt gctttttaat gaaagcaata
      541 tattatctta cctagagacc ctgcagcctt accttgttaa tgtattctgg cttggcacca
      601 cattcatcta taaattagtt ggattaaaca tgcttcttac tatttatcca gtctctaaag
      661 agttggtttc ttttattttg tttttaactt ctcttcgtac ctcctccagc agcagcacca
      721 cacacacact gaacagtgat gcagattttt cataaaaata aatagaatta aataacagag
      781 acacctccat actctactta gtaactcttc acatttagcc attaaaatat gcactaaagt
      841 atatggaacc agtatattat ccaagttatc tgcaaagg
//
LOCUS       KCLA01001533            1062 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24922upu ultra-conserved element locus uce-940,
            sequence.
ACCESSION   KCLA01001533
VERSION     KCLA01001533.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1062)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1062)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24922upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1062
                     /note="ultra-conserved element locus uce-940"
BASE COUNT          316 a          202 c          171 g          373 t
ORIGIN      
        1 tatttgcaga tgccctgcat ccttcgaaag tctaactatc cgatttcatc aaggtttgtc
       61 tatgcacagt tgcaggtgtc aatgacatat gagcacaaag ctgcaagtct agcttgatag
      121 atatgtgcag cccatgtatt atcaaaaatg gattacagaa attcaaatat gtttttaatg
      181 tcacttcaaa ttcattttta acttttcttc cctgtttaat ataatccagt atgatccaca
      241 ttactgtatt ttaaaatgat ggataggtta ccatccaaat tatttgtaag acataaatga
      301 ccattgtatg tctctttgaa gtcagaggat gtattctgta tgactcaatc attaaatcat
      361 cttacacatg tctaacaaag cacctgcatt taaccatact ttctatattt acatttttgg
      421 cctctttcta agatcaggca taaatccatc aggccacttt agaactttag aacttccttc
      481 ttttacatat ctactgctca ttatccagaa gttattctgt cccctgtgtt aaattacttt
      541 atgctgcagc ttaaacgaac atgtcttgct ttcatctagc atttcaaata gggcaaagac
      601 tgctgtacaa tttccaaaca caactgtgct aacagagatg aattactaca gtttatataa
      661 tttatattag gaattcatag acctagcaaa agggattagt acattttatt tcagggtagg
      721 agatgatcct gtcattaatg gtcgatactt tcatcatctt ttaaacctga ggaatttcct
      781 gggtgacaag actgtaagga catatcaggg attcacagct gtgagcttta tctggccgtg
      841 tactgcttta ctctcagtat gtggactacg ttccatcaaa actggattag actgtcaatc
      901 atgtcctgca atgtatattg tattatgatt ttttgaaaat gtcactgaga tcagagtaat
      961 ttcttagcta attgcatctc gtctcttctt aatactgtgc atttaatggt ttcattacct
     1021 tacatgacaa tcacgaagtc tagtccagca ttaagggcag tt
//
LOCUS       KCLA01001534             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24938upu ultra-conserved element locus uce-6347,
            sequence.
ACCESSION   KCLA01001534
VERSION     KCLA01001534.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24938upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-6347"
BASE COUNT          244 a          193 c          239 g          197 t
ORIGIN      
        1 tatagggctg ttagcctgaa atgggtccca gcttctattt caggtgaatt accatcattt
       61 gcaaaggctg tctctagcct ctcaaactga tgttgttaaa cacagccaat tctgcctctt
      121 gcccattttc tcactgctgc tccccataca tagctatctg aggaagatca tgtgtcctct
      181 gaccgcggga gccctgaaga agaaagatgc tcctcatctt acctgagaag aactggctga
      241 tggagtgagg cagaagagtg aagaaggcca gtgggtttgc aaaggacatg gagagagcaa
      301 cagaaatgta agccatgcct gccaccagag agtcaaggca agccaaggag gtgtagaggc
      361 agaacatgat gaagtttcgc atatttctgt ttccaatgca gttcccagtg aagaaacaat
      421 gatggtcatg cctctgggtg actctggcac acagtctaca gaagtgagtg ctgggcaaag
      481 ctgagtcagg ggacttgctt ccatccagcc actctgccat cactttggat cctttgccca
      541 agtttaagcc tttgctcaag tcttcggggg aactctggat cacaaggatg tagttgccca
      601 gaacattagc tgagaggaag aggaagaggg ccccatgcag cagagcagga gagaaaagtg
      661 gagcggcaga agggtctctg aacatgctgg ggatgaagag aaagatctgt aggacgaagg
      721 tcactaggga aatgcacaag aagtaggctg gagcgacaac attgagtaac ctgagaacta
      781 gcattgcgga ttacgttcct gcaggggaaa aggagagaag gaacatcacc actctggctg
      841 cacacttcat tcttccattt tctgttgggt ccc
//
LOCUS       KCLA01001535             914 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24954upu ultra-conserved element locus uce-4586,
            sequence.
ACCESSION   KCLA01001535
VERSION     KCLA01001535.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 914)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..914
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24954upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>914
                     /note="ultra-conserved element locus uce-4586"
BASE COUNT          226 a          202 c          264 g          222 t
ORIGIN      
        1 ggagactgcg ggggtttcca tccccgcgcc gtggcagccg cagagctggg tttgtcgctg
       61 ccgcagacct ccatccgcgg ccgcgtgcgg ggcgggagag cggcgcccgc agccagccct
      121 cctctgagaa acgctcgtcc taaaccgagc gccatcgaat aaaaatggaa acataaaaat
      181 agcagttgga aagataaacc agcatttata gtactaataa aaccgttgtg gcttccacag
      241 gaaaacatgc tctgtaacct aatgctcacc tggaaggact gtcgagtttc cgagagttat
      301 ggctgttttc gtaagagaag cgccgagatt tgcttcgggg ctgagtgata gattctcctg
      361 cctggagcat cccagtgtgt ttatacatgg cttgtatggc agctttcata agacatttac
      421 cccatgattt gcgatgagct tatgtgtgaa taattaatgg caattaatcc ttaattacag
      481 taattaggca agtcacagga aattaagctg cagctggaga agaccatgcc tgggaagaga
      541 ggattggggg ctgtgtgaat gtgccattca ctgacaacat tacgaggatg agcggcattc
      601 agcagccttg gcatttctat tggcagcctt gggtaggaca agagcgcccg acaggagcgg
      661 caatcgatag ttgtctacaa gagtttggag cccgagtgcc aaactgttgt gttgcatatg
      721 gtgattatcg aagtttattg gttgccataa ttcaaagggc tgtaattgtt tttggcttgc
      781 tagtggcatt agaagctgaa gcttttatgc gtgcggaggt tgtgctggca ccagccgtgg
      841 ttcaactcca ggaaacaatt catccgggct cgcaattagg aggacgggtc ccgcaggccg
      901 ccggggactg aggg
//
LOCUS       KCLA01001536             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24970upu ultra-conserved element locus uce-6909,
            sequence.
ACCESSION   KCLA01001536
VERSION     KCLA01001536.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-6909"
BASE COUNT          238 a          139 c          174 g          270 t
ORIGIN      
        1 aaatcttaca tgtgcttaaa tgttgcttat gttgcttcaa tgccatggta tttgatgcag
       61 tgcttacagt aacactgttg aattaactat gtaaataatt aatgcctgtt ggtattaatt
      121 atttgtcact catttctttc tctccttttt tttgtcagga aaagaagaat atattgcaac
      181 attcaaggga tcagaatact tctgctatga tttgtctcag aatcccatac agagtagcag
      241 tgatgaaata actctgtcat ttaaaacact tcagaggaac ggactgatgc ttcacacagg
      301 aaaatcagct gattatgtca atcttgcact gaaaaatgga gctgtctcct tggtcattaa
      361 tttgggctca ggggcctttg aagcgctggt ggaacctgtg aatgggaaat ttaatgacaa
      421 tgcctggcat gatgtgaaag taaccaggaa tctgcgtcag gtaacagtac aatggataca
      481 agaataactg tcttcgttat gagtaaatgc tcaatgatgt gaaacttgca tagtgtgaca
      541 ttggatgttt agcaggcatt tgattagctt ttttatttgc acaaggaggg atattcctgc
      601 tatacttgag caggggcata tctagaaagt tgtagggcaa gcagctgtct gacagtatca
      661 gttagatgtt tcaaagactg tagggatcac ttaggtgttt ctatagtaca actgtctgcc
      721 ctcgcagcct tgctgtaatc aaggctgaca actttgcatt ggatatgagc tactgtgaat
      781 tacaactctt tcattcaaag aaatgttcta tctatttttc t
//
LOCUS       KCLA01001537             351 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 24985upu ultra-conserved element locus uce-5581,
            sequence.
ACCESSION   KCLA01001537
VERSION     KCLA01001537.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 351)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..351
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="24985upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>351
                     /note="ultra-conserved element locus uce-5581"
BASE COUNT          114 a           76 c           62 g           99 t
ORIGIN      
        1 ctaggaaaat ctaataatac cctccttttt tccctaagat tcagcaggta aaagctctga
       61 ttgaatttca tcttgatttc attaaatatt cataaaggcc aattagaagg gcagctaagt
      121 aggccacaag gctcccttcc atcattctgt caaaggcagt ccatcagaca ggcctgtttg
      181 cattagagcc tgctagtcaa tatcttcatt caatctttat gtagtatccc tctaaatcac
      241 tgctccatcc cactttacgg cttttatgga cagacaaggg gggaaaaaat ctaataattc
      301 tgaaggcaag atgcttactc ggtagaaagc aaaatgcaaa tgagagaaaa c
//
LOCUS       KCLA01001538             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25000upu ultra-conserved element locus uce-3345,
            sequence.
ACCESSION   KCLA01001538
VERSION     KCLA01001538.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25000upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-3345"
BASE COUNT          228 a          154 c          131 g          234 t
ORIGIN      
        1 ttctcataag acaagatcct gaatccagcc tggatgccag cactataaag ggaaagatcc
       61 agattttcga attcaatcca taaactacat ataatgaagt aacaagagga aatggagttt
      121 tatgttctcg tgctattcag ctctttaaag ggatagcaaa taatctattg gttaacattt
      181 aacccaaact aataggtcca atctcgcata ctcaaataaa tcataatgtc ttttcaattg
      241 gtttgcactt tcacttgctg ctgtcctgaa taattaggaa aacaattcac atttcactgg
      301 gagatgatat gaagtcttat tcctgtgata attaccaagc tgcagttcag tttccccggc
      361 tcccaccagg tcatcagggc acaaaagagg acaccatgag agcattaatg agctctcatt
      421 gaagatgtta aaaagcttgt attgatctgt ttgtccaaga aggagatatt taagcctttc
      481 tgctgagggc aggagagaca gagattcata tcacaaagcc ttttatccaa ccccttctgt
      541 ttctggcttc aatattgccc agtctcagca tgtctggttc tggaggtcat acttttaaac
      601 tttcacaaca tttttttttc ttttcccttt cttctttaaa taaggaaaag agagaaaaga
      661 taatatacag tgtacactta acctttgcta cagggatccc tttccacagc tagctttttc
      721 ttagagcagt cttcagtgca gtaacct
//
LOCUS       KCLA01001539            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25015upu ultra-conserved element locus uce-4998,
            sequence.
ACCESSION   KCLA01001539
VERSION     KCLA01001539.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25015upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-4998"
BASE COUNT          333 a          172 c          171 g          359 t
ORIGIN      
        1 acggagatta cttcagaagt gtgatgcttg aattgaactt tactttctga tgttttcctt
       61 tttgaattaa attgttggac aagattaatt gcacacagta agagattcaa atgaacagct
      121 ttataaagca ttaaagttct aagtatgtca catgggaaaa aagctgtaag gtttaaatga
      181 ataaatgtat ttaatgcaca aaatgtctag gctaattttt taattccttt actaacatct
      241 tttattgaaa aaccatactt tattcatcca tcttagttat actgttgtgg ctatggtaat
      301 ttaatattcc tgctcttcgc taatcttctg gttcaacaga agtaaacaat agctttcata
      361 aattaaaaat acgctcttca gaacatgctt ctaaagataa aaaacaaggc tgtaaacatt
      421 tatgactgaa acaaactaga ttgttcaaat actgccatga tgtatcatgt atatcaatat
      481 ggcactgata tcagttagaa tgcaaacaag gttttaaatg atgtgcccct tcatttcagc
      541 tggagaatcc gctttacacc atctgcctat cagatggtta ggaaccagga ctgcgtatta
      601 atgccacatg ttcgattttc tttcctcttg taatggttag attcatattg ctaatagctg
      661 tgcatgagca ctgtcgatga aatttgtgtg acgatggagt gatgagatat ttataaagct
      721 gcctgtctca ctgcataatc agcaggaaga atgccagaca taaacaactt atcaatttca
      781 gaatattaat gacaactacc attgacttta atccatcgaa tattttgccc tggatacttc
      841 ttaacagtta aaataaatat ttgtgaagat taaaaaatat ccaagtggct ctttgtcttg
      901 ttccttattt tattcattta gttgcctttg gagatgactt cttgttattt tacatttgaa
      961 gccaaaattt tgtagcagca gtgattgtag tttagctgtt ctgcaaccca cagtgaaaca
     1021 gatacatcct atgtc
//
LOCUS       KCLA01001540             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25030upu ultra-conserved element locus uce-6320,
            sequence.
ACCESSION   KCLA01001540
VERSION     KCLA01001540.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25030upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-6320"
BASE COUNT          170 a           90 c          121 g          135 t
ORIGIN      
        1 ggggggggga agcttttaaa gtgaagcagc atgtatcatt tctccttcca ttggctgttt
       61 atccaacatc aatacaacac tttaggagcc aaattactaa acaagctgcc aattaggctt
      121 gcagtcagct ggatagatta gtggctaaga gcagcagaca caagattttc atctcttgag
      181 ccaattacac aagtgaatta ccatccacaa tgctccttgg aagatttggg gtagaaagac
      241 tgactctgct gtgatagaca taagtgagat ccagggtagg gggtaagggt tagcaggcca
      301 tgtattgcaa aaattaccca agcaaaaaga gatccttcta ggaaaggatt taaaggattt
      361 aaggctgctg ggagcgatag aagaggaaat aatagttgtg gtacgctctg caaaggcatt
      421 gctgttctgc tcacaagtct taatcatata aaagaaagat gaaaggccaa gactatattt
      481 atgtacagtg tcattttctc agaactgttt aaaaac
//
LOCUS       KCLA01001541             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25045upu ultra-conserved element locus uce-4869,
            sequence.
ACCESSION   KCLA01001541
VERSION     KCLA01001541.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25045upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-4869"
BASE COUNT           80 a           71 c           83 g          107 t
ORIGIN      
        1 gggatgcggt ggctctcccc aggcctgcgg gaagcagaga ttgcatctgc ctttaattac
       61 tccttctctg catatcagat gctcgtgcac cttctgcaca tgaatgctga ttaattgcag
      121 ggttaggctc cgaggcaggc cggaccacat tatttctgat gtttgctctt ttcacgagga
      181 gaataaatgc catgaatcca cagtaatcag tggcttttag cttgtcactc ttatgacact
      241 ctttacttag accaggaaat ggcaaatgtg gtggaaataa gaactttatt atctcttttt
      301 attttttttt gttcccaaaa gggaggtgtg cggtgaggag g
//
LOCUS       KCLA01001542             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25061upu ultra-conserved element locus uce-367,
            sequence.
ACCESSION   KCLA01001542
VERSION     KCLA01001542.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25061upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-367"
BASE COUNT          318 a          163 c          156 g          319 t
ORIGIN      
        1 actttagtct gctcctgtat gctccagttt ccaactggaa tatttattgt ctagtaatca
       61 ggtttttgtt cataagaaat atgacacgct atacttctgc atacatgctt tcagaaagag
      121 gaatcctctt tttttaaaaa gacaccaaga catatgttca cactgtgcac aaacactgtc
      181 atgttttctt ttgtctacaa ttagctcaag taattagtgt gtgaaacaat agaaccctca
      241 atatatgaga cctttggtaa attaacaaga tttcgtcaag gccatatttt gtggaagata
      301 ggaattcaaa acagaatact agaaaaacat agagacactc ttcagaaaca ttgtgcttta
      361 atttataatg tataatctat acatactgta taaactatat aaagaatcaa gcaatcatgt
      421 ctcagtgtta tctattgcca tcattcccca tgcattgagg ctctcactat agctattact
      481 ataaaacgtt ccctaagtac ataaaggctc taatcgttaa gatttttatt accagccaca
      541 catacagcgc tgcaaattgc cttgtttcag atttattatg tattactcta gaaattctat
      601 aaagatcaaa agaactgatt acaatgttga cctttgcatt aactcatctg aatttaaatt
      661 caagtgtttg atttgggaaa ataagtccat ttatcatagg tctgctactg aggggattgt
      721 acagccctga ttgggagtgc tgagaccaaa tttatttatt gagcatgggc ttgaaaattg
      781 tttgtaggac aagaagaaca aaagtttgac ctgctgttgt gttacaccca gggaacaatg
      841 tgacagctgc ccttttcaaa tatctagcag tctactctta ctgaagggcc aaaagatatt
      901 tatagttaaa tataaatata tatatatttg gatgtatttg taactatttg aaagta
//
LOCUS       KCLA01001543             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25076upu ultra-conserved element locus uce-2574,
            sequence.
ACCESSION   KCLA01001543
VERSION     KCLA01001543.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25076upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2574"
BASE COUNT          259 a          156 c          189 g          294 t
ORIGIN      
        1 ttgattgtta ggccttgtgg taagatcaaa accaaggggt cttaattcta aagtattata
       61 aagtgtttgt attttgattt gtttgtataa gcccccagca gctggtgctt tgctttttct
      121 gtggtttttc tatgtgtaaa atgcccctcc gcctcttcag ccaaagtctg aggaatgaga
      181 tttttttcag aacaagagaa aattagtaaa tcaccataaa actcaagaca ggaccaaatc
      241 taggaatttt attggtattt ccaagtgcct taaaatacaa atctgccaaa gtggtgaagg
      301 gactgttttt tttatttcct ctggtaactg aaggttaaat gagtagcaag cagaatgcct
      361 taaacaagat tggtatattg attaaaacgc tgatttaaca gctcgctttc tccctttgga
      421 aacctggaaa agataagcca gctgctgtct aagagtgctg agtgtccact gagagtaccc
      481 tatctatcat cacaatatgg tgatgagagg tgttttatgt ttgtgttaat ttcccccact
      541 aaatcagtaa ttattacaat cctgtccctg ctgtttaccc tgcagctgtt tttccatttg
      601 tcgagagagc gggtgttctc agaggaccgt acgcgcttct acggtgcaga aattgtctct
      661 gccctggact atctgcattc ggggaagatt gtgtaccgtg atctcaaggt aaaaaaaaat
      721 aatgacattt ttgtttttgc agatactttt gggacaaaca caaagtaatt ataaagttgc
      781 ggtattcaga cttaaatggg ggaaaaaaat gcctgtttgg tttgaagtta tgtgtgtgat
      841 tgagaaatga tacacggctt tccttgaact tcattaaaaa aaggttcaaa cctctgat
//
LOCUS       KCLA01001544             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25092upu ultra-conserved element locus uce-288,
            sequence.
ACCESSION   KCLA01001544
VERSION     KCLA01001544.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25092upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-288"
BASE COUNT          163 a          165 c           96 g          206 t
ORIGIN      
        1 gccacagcag catcacccag accatctcca gttgggatac aaatgcctcc agcaaactgt
       61 gttgacctgt cgccttctcc ccctctcctc ctcgaaggtt ccccgtgtgg gtggcccttc
      121 agtcttttgt gccgttgtcg tttcctccta ggtggtacct gacaagtcct ttcttaccct
      181 tagaatttgt tgttggggat ccattcactc caaactatca ttaccattgc aaacgggaaa
      241 atgtgtttat caggaactgc aaactccttt agggcctcat aggattaatc acggttataa
      301 agttttatta aacacaattt ttgtttaatg acaagctcca ccagtcctcc ccattccaaa
      361 ccaatcctgt cctaagggtg tatctagcac agcagattgt tttcaacaga ctctcaagac
      421 aatccctatt actttgtcat gcacagagat atttttcttc ctagataatt tgaacttcct
      481 taaaaatcac atctgtttca tactttattt atttgtaatt taaatcctta aattgaatct
      541 ttcattacta acatctgggc ttgaaatgca gcccacttga aaaaatacaa atttgatttt
      601 atttggagtt acccccctcc ctctcacccc
//
LOCUS       KCLA01001545             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25108upu ultra-conserved element locus uce-222,
            sequence.
ACCESSION   KCLA01001545
VERSION     KCLA01001545.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-222"
BASE COUNT          261 a          189 c          225 g          236 t
ORIGIN      
        1 gtccctgggc acgtgtgccg cggggacgga caacacgggt gattctcaac caaaatcaag
       61 ccagataacc gcatccagaa aaagccacga tagccgcggc tgggaccgag cgtcgtctga
      121 tccgcaagct gttgggttgt atgtcctatt gatttaatat gctcctaatc agtacataaa
      181 gctataggcc cgcagtgtta atttttcata cgcttacaaa gtaccctttg attttctgtc
      241 acgcgttaat tacagcggtt tgccattaaa taggaagctt tgtgtaaact aattactagg
      301 taatcattgt ctaccgccag cgtgctgttt gtacctttta ttttattcta aaaacgcaca
      361 gatctcgcag tctggaacca ctctaccttc cagccattag ctctcactaa ttcatagcat
      421 tattgtgtta agattgtagg agttgtaatt gttgtggtat cagtgctgtt aattaccgga
      481 gtaaacagtt gaaatggtgc caaggtctat tgtacaaggc agaggaaagg aggtttaaat
      541 gttacttcca ccatctgggg actggagtag aggcaaatgc taggaaacag cagtgaggca
      601 atatcagaac tccagctccg gggtttgagg ccatatggat ccagaagatt tggaatcaat
      661 tgaatttaag tgccagtttg tagcgataac agcgcagaag gagaggagaa agcaagagcg
      721 ctcgagacgt cggaaatcct ttaatggcac cgcagccggt gaaacggctg cttggattat
      781 tggaaaaatg tttattgggc taaaaatccc taaaaaaacc ccagtgagca cgatggcaag
      841 aaagcactga actctgttaa atccccgttg gcatcgcagc tcagcggtgt agagaaaagc
      901 cctgggatgt g
//
LOCUS       KCLA01001546             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25124upu ultra-conserved element locus uce-4359,
            sequence.
ACCESSION   KCLA01001546
VERSION     KCLA01001546.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-4359"
BASE COUNT          117 a           59 c           92 g          131 t
ORIGIN      
        1 aacaccatgc gagtttttgt ttaaaagcca aactcttgat ggatgctggg tttgtaggag
       61 ctgtaaatgt aaattgtttt tcctctggcc acttgtgttt tatttgaaac gtacaaagcc
      121 tgagtgtgta gttcctgaga gctggcctag agaacagcag cactcccaag tagtttgtct
      181 cctatcaaat agcattaata atttagtctc taattaaaag tgaggtcaaa caatgaaaaa
      241 tgactgagct aaatggttac gctgtgatgt attaaagtga ctggtgggtt ttaatggatg
      301 gaaggagcgt tgttgtttgt ttatgtacaa aacactttca gtcaaagact gtaggagtcc
      361 tgaggaaatg tgtttaacta gaatctttta caggttact
//
LOCUS       KCLA01001547             849 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25140upu ultra-conserved element locus uce-1329,
            sequence.
ACCESSION   KCLA01001547
VERSION     KCLA01001547.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 849)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..849
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>849
                     /note="ultra-conserved element locus uce-1329"
BASE COUNT          287 a          160 c          131 g          271 t
ORIGIN      
        1 aattacctct atgagtaagt tgggatattt tgtcataagc tcactgagtc tgctgtattt
       61 gtagtgttcc aaaaagtgaa ccccactgct aatgttttta ttttaataaa ttattaccca
      121 acacaaccac cgccaacatt ttacagagca agaacactga tttctgtaat ttctccagcc
      181 ctaatgccag tcactattgg gagcatttag gtataaattg tctttcaata aaagtaaaag
      241 ctcccaaaac aacaaaatga aaagacacag cagcttaaat caaggaagtc aatttccaca
      301 tgctgatcct aaatatttca tagccctatt ttattctgac atttgtagat gactaaagtg
      361 ttacaaagga aataaaatgc tgattaaaga gttcactgtc ataaaggtta ctgaattgta
      421 aatggccctt tccatcttcc tgttaatagg tacccagctg taaacatcat gaaggatgtg
      481 acgggaggct tgtgctgctc ctttaggagt catatataca ttaatcactg aatcaccaag
      541 ccatgcttaa ttgcaagttg tatatcacac aaatccatgg taagtagaag gaaactcatt
      601 attgctgctt cataactact gggtacttct cattttaacc ttctcacacc tgggacactg
      661 ttgttttaca atgtgaatgc agaaaaggca ttaagtcact aattacagca acactgtatg
      721 ttatcctgct gtttcaacat ttttcaaaat aatactaagt cctaatcata ataaagaaat
      781 atatattttt tagattagtt aagtgacttt tatagtattt ttaacagcgt atagcattaa
      841 aaaacccca
//
LOCUS       KCLA01001548             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25154upu ultra-conserved element locus uce-2331,
            sequence.
ACCESSION   KCLA01001548
VERSION     KCLA01001548.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25154upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-2331"
BASE COUNT          191 a           98 c           80 g          157 t
ORIGIN      
        1 tccatattca gtagatgttc tgttttttcc ttagttgtag agataattct atgtttattt
       61 aacagatata caagtacaat aacttactat tcatatataa gcacacactt actgtttggc
      121 tcctttgaga agccataaat tccatctatt ggacattagc taaaaaatta catgtgttta
      181 tcatctggat tattctcaga ttaatagaga taaatgacaa aacataatca gcaccaactc
      241 tgcaacttaa tcattgcatc tgagctatag gaaacactta attactctca tttactaggt
      301 gcaatctaat gagaagacat tagccaaatg aaaagaatgc agtacaaaca aacaaaatag
      361 ttataccatc attaaaaaga aactctgaca gtgcaggtga cagcatatgc aggataaatt
      421 accataatgt cctaaatgct gagctgtcag catgctaatg cagtgatcag ataccctggg
      481 aatctcagca ctatagctgt cagaagcagg tatcataaat cacctc
//
LOCUS       KCLA01001549             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25170upu ultra-conserved element locus uce-6812,
            sequence.
ACCESSION   KCLA01001549
VERSION     KCLA01001549.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-6812"
BASE COUNT          189 a          104 c          100 g          202 t
ORIGIN      
        1 cctttaggga gagctcagtc tgagtgtcac catctgtgct atgagaggat atttcaagat
       61 gacattcctt ctgcaaggag aaaaacctct tttgaagtca taaagtgtta actttttgaa
      121 atctttttcc agtagacttt catatatctt acttatttaa actcactttg atggtattgg
      181 aaacacattt gcaggtaaat tacatacata gtccttttat tggatattga ttatactgcc
      241 ttgcattcca aggcagactt aattcaacaa ttccctaatt agttaaagtc ataacctatg
      301 tcttgtattc atttaccatt aattaaacct tagctgttta ttacactgca gtccaaatcc
      361 aatagtagac tcatagagcc atggaaaagg gaatgggagg tcaatattga aaatatatgg
      421 tgcaaagtcc cactgatggc tgcgttgttc acaatcaata tggccaatgc aacacaactt
      481 tcttagttgc tatgtcagca agacaaaaag tcaattctaa tgttatgcta gtaaaaaaat
      541 ggtgattatt gaagaacttt gactctcgct atgaaacagt ttttttgtta acttt
//
LOCUS       KCLA01001550            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25186upu ultra-conserved element locus uce-3340,
            sequence.
ACCESSION   KCLA01001550
VERSION     KCLA01001550.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25186upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-3340"
BASE COUNT          367 a          250 c          182 g          274 t
ORIGIN      
        1 cagcatgagt agccatcccc accagaacac gatgcatttg ggctgccact gtccactaca
       61 caggaaacag catttaaaaa aaaacagaac caaaaaaact gagacgttac caaaaagaaa
      121 tcaccaacca aaacattcta gacagcagaa ctaaaagtat ttatgaagca agagtcttct
      181 tccagaacaa gaactgtatt ttaacaataa acagtaatgt gatcatcagt atggaaggtg
      241 cagtcctgct cccagctggt taatgacatt ggctgaagtt ctatgcaagc tcatcataat
      301 tctttagaat gcagtttgcc actccacacc agttaacctt acattacatc actaaataaa
      361 atgctattcc tcaacccatg cttacttatt tctggtacac aaaacacacc tcatcttctt
      421 catcagtgct ctttcctgat ggcacattag aagtattttt tgtgtcctcc cctaaagcag
      481 aagcatcacc attagaagcc agggttcctt gttccgcttc ccattcctgc aatacctcct
      541 ctaagttaaa ccgacgcctg tagtttacaa agaagttctt cacttggcca acagtcttgt
      601 tgccaattac atctgcaata gcttgaaaat ctttaccata ttttcggaca cctggaaggc
      661 aaagtaaata acatagctgt gaagaatcag tcagacacag ctacgtgtgt tgtatttata
      721 gaaagaacct atgggacctg caaaccaagg acttgctaat taggaggact tctcaattag
      781 gaggagcctc tatttccgtt aaagcaaaat aacttttaat tgcaaagcta tcaacataca
      841 aaccaagaac tttattaaaa agtcattacc cactcttctt agagatcctg gcttactcat
      901 caagcctccc aagctaaaac cacagaaatc cagcctctga caagtaaaat aaatccttca
      961 gggtacttgc agcaagggca gaagcccaag acaagttcaa catgggagag ggagagtgac
     1021 caagtgtgtg gtatagctgt aaacaggaca tatctctaga aataaagtga caa
//
LOCUS       KCLA01001551             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25202upu ultra-conserved element locus uce-2742,
            sequence.
ACCESSION   KCLA01001551
VERSION     KCLA01001551.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-2742"
BASE COUNT          253 a          178 c          161 g          206 t
ORIGIN      
        1 gggggtgggg gggttcatgc atcaccagcc actccctgca tggctctccc tgatttaccg
       61 tgcaagacaa ggccattcac gtgctgtcat caaatatatg agatttttca agcaatccga
      121 gatcttaaac tgttcacgga taaccggcat tagcacgcta aacaggaaca caaaagcctc
      181 tcatattcca taacgtacgt cataaccaac aaaagccttg caaaaagaga aaaaaggaaa
      241 gaaaacggtt ttcactgtgc taaagtaaca atctagactt gttgtaagtg tgttattctt
      301 acaagtagtt cgcagttatt cttgaaggca agtcttggag tttccttagc atagtgctgc
      361 tggggaaaat tttcagcatg tccatcttca tctctagcct gaagggaaat ataatggcct
      421 atttagggac ttacaaataa tggaaggaaa agaaatagct aaaagcataa cagctcagat
      481 cattacaaca gacgggaatc cccaaacaca acattacttc aacgtttctt taaatacacg
      541 gtacacgctt tccacatgag aactcggggt gccgttttct tacacagctt aggttgaaca
      601 tgcaaattca gtgcggtgta atcattagaa caacaaaaga caaacccaga atgaaacgtt
      661 ccagctggaa accgtgagcg gagctcaggc tttttcactt tttcaggatg acattacaaa
      721 cgtactcgtt tcagcttttg acatgctcca gcaacccctg agggtcgtac ttgcattttc
      781 actttaacag caaggcca
//
LOCUS       KCLA01001552             548 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25218upu ultra-conserved element locus uce-7442,
            sequence.
ACCESSION   KCLA01001552
VERSION     KCLA01001552.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 548)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..548
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25218upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>548
                     /note="ultra-conserved element locus uce-7442"
BASE COUNT          146 a          135 c          148 g          119 t
ORIGIN      
        1 gtttcgggag caggttacgt taagcaaagg tacgtcaatt gatactaaac ctgctccaca
       61 ctgtcatttg tgcgtgattt gaagaaaacc agaccatgta atcaggtcta aggggtccct
      121 aataccagag acgctggtgc tgtcagctat agaaaataat tagaacgtta tccctgtggc
      181 aaggagaatg taaatacatc taaaatacga cataatgaca ttctcctctg taagccaggg
      241 gatctgcttc aaataaaagg gccattaaca caacaattaa agccgagggg gccggtgaag
      301 tagggagccg gcctggtgca gggcgaggcg agcaagcgct ctgcgtaaat ctttcgccat
      361 cccagccagg aatgtgacta ttagccctct catgacccga gggcttccca ataatgcatc
      421 tgctctctgt cagggccagg atttcataac gtcctccagt aggagccaag ggccggctcc
      481 acggtgcggc gccaaagagg gagttggccg gagcagggtg gctccacgct ggaccttggc
      541 ccctgttc
//
LOCUS       KCLA01001553             272 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25234upu ultra-conserved element locus uce-7689,
            sequence.
ACCESSION   KCLA01001553
VERSION     KCLA01001553.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 272)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 272)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..272
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>272
                     /note="ultra-conserved element locus uce-7689"
BASE COUNT          102 a           37 c           64 g           69 t
ORIGIN      
        1 aattattagt acagtggcat gaaaagctgt tgagcccctt agaaacgtac atggtcaatt
       61 atcaaaaaat ataagagacg tagaaagaaa ggtttgtcta ataagtatga atcgcagggc
      121 catttagaac atcagtgtta aagcattaga gttaaatgga aaagtaaaaa gggcctgatg
      181 gttttaacta tttcacagga ggacaagagg ttgatactga taagacaagc agtatagtga
      241 agttaattat ctgcggccct cggtgcacaa ag
//
LOCUS       KCLA01001554             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25250upu ultra-conserved element locus uce-5951,
            sequence.
ACCESSION   KCLA01001554
VERSION     KCLA01001554.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25250upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-5951"
BASE COUNT          319 a          175 c          156 g          253 t
ORIGIN      
        1 tatgtaacac taatgtaaat cagaagcaat ctccttgaag ttaatagaga tcagattcca
       61 ggctcataag cttttgcaca ctgaatttag ctatctgtca tgcctccgag gttacagccc
      121 agacctaaaa gaaggcacag tgtaagatca atgttaagga aagagtttca tttaaaagac
      181 catcttttcc catcagacat gataggagat ttattattcc aatattattg ttgaaactag
      241 aagagagaga aaaaataaac aggaacatat attttcattt tatgactgcg aacaacattt
      301 catactgtaa acatatcttg gtctataaca tttacccagt ataatttcaa tacagtcctt
      361 attgctagct cggcagagcc tccccagaac attgtgttaa tgattaatat gaagtcagtg
      421 gaattccaca gttgctgaga gtcttgtgcc caagaatgaa ctgcattgct aaatcagcaa
      481 agacagttgt caaggtaacc tctatgtaat ctatttaact ggctcccaaa acaccaatca
      541 aggtcagata acgcactcaa gcaccatatg aacacactca tacggcataa agctttgtat
      601 caagacagca gggaggaaaa aacctcatta ggaagtaggg ggaaaaaaat aaattcagtt
      661 tagagaagtg ttaattggga ttgcagttag ctttgcgggg aaagcatgcc gctcatctga
      721 atatgtttta tctatagcag aagtaatttc cccccagttc agtttggatg gaaatatcct
      781 tctactagca tttaaaaaaa tccccaacac aacaacccac ccaaaaagca aaactggcta
      841 cagataaatt attaatttca tttattgttt tattaataca agactggctt ctacaccctg
      901 ata
//
LOCUS       KCLA01001555             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25266upu ultra-conserved element locus uce-6538,
            sequence.
ACCESSION   KCLA01001555
VERSION     KCLA01001555.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25266upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6538"
BASE COUNT          230 a          103 c          118 g          195 t
ORIGIN      
        1 gctttatgct gatcgagtga atttcaccct acataatttc atctatccta gctcaagtca
       61 cttaggaagc ctttatgtag attttgcact taattaacat aacctcatca gacttggtat
      121 tttctggaat ttacatgaac tggatgtttt aagaaacctt gactggagac cgagatgtaa
      181 agtttgctgt ttttgagaga acggaagtaa atactgtata cagcaataaa gcaaagacaa
      241 atttggatta gaagatggat ttagtgggtt aagaagtcac agaactttga caaagcacaa
      301 ctttactact acaaataaga accctgagct gcatttgaat tcacatcaca ccacacctgg
      361 taagaattag tctagcacag catcatcaat catagtgtgg ttgtcagttt tgacatcctt
      421 taagtctacg ttgtgtgctt aatgactaca ttacagaaaa tgtaaacaga cactaaacat
      481 acaggtatgt cctatatttt taaaaagttt ctgtgtattt taaactaaca ataaagaagc
      541 gctaagagtg ttttgataga gagtgaataa atgagctgta agtgaagctg ttctaaaatg
      601 acaattttca aaatttctca aaatggaaca gagagaagac aagaaa
//
LOCUS       KCLA01001556             706 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25280upu ultra-conserved element locus uce-7706,
            sequence.
ACCESSION   KCLA01001556
VERSION     KCLA01001556.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 706)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..706
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>706
                     /note="ultra-conserved element locus uce-7706"
BASE COUNT          214 a          121 c          117 g          254 t
ORIGIN      
        1 tggaaactgt agataaatac aatatttata agtccatgac aagtaaacat tagctgttta
       61 attcacacgg gattagccta agaacagatt agaaatcact gtggttctga aattttggtg
      121 catcttttat acttgattta aaagttcaag gcttattttc cttctcaggt gaaacaacat
      181 ttttccacgt tgttttttct aatgcttttt tctcatagac aaaaatataa attctaaaat
      241 tgttctatgc tttatatttt ttatgtggct gtaaaattaa aattcatgaa gaatctaatg
      301 tatacatatt tttatgcttt tgaatagaag tggggtcctc tctactgaga catccatctc
      361 ctgaactttc tcggttaatc tccgcccaca gctctctttc caaaggagag agaaatttcc
      421 aatggccagt attggcattt gtcatccagc atcatgatct ggaaggactt gaaatagcaa
      481 tgaaacaagc cttacggaag tctgcttgcc gtgtctttgc tatggaggta ttaatgtact
      541 aatggtcatg tatgattaca ataagaaatt ctaaatcttt gaataaactc tgttagaaaa
      601 gcatcaggac tccttacaaa attgcttaag aaatgttttt attccccggg ttacataact
      661 ccctgtgtgt attttatttc aggctttcaa ctggcttctt tgtaat
//
LOCUS       KCLA01001557            1057 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25295upu ultra-conserved element locus uce-1169,
            sequence.
ACCESSION   KCLA01001557
VERSION     KCLA01001557.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25295upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1057
                     /note="ultra-conserved element locus uce-1169"
BASE COUNT          314 a          217 c          203 g          323 t
ORIGIN      
        1 cggagaatct ggcagcactg acaaaaatct ggcaattggg gaaggcctgg aactgaacag
       61 cccttataca gcacaactaa ggcctgtaac gacagcttta ctccagtggt gccaggattg
      121 ctactccttc ccgtactgta aagctgtttc catgctgata tgctgtgact tctcatgttg
      181 tgacttgtgt gttaaccccg gcacagagag caggcttttt gaggacagtc tgttactcac
      241 agcgaacttc ttgtatcgtt aaatcacttt ttgggttttc ggggaacttt catttctgct
      301 caattccaaa tctttctgcc aagttaatat aagccttttt aatgtagtcc gccttgggaa
      361 aatagggagt ggttgtgttg aggagtctgc tgtttttttt taacgtgaaa agtccgttaa
      421 gtgatctaga tttgactgga tactcactct gtcacacagc tcttcaaacg tgaagtctgc
      481 aatggttcca cacgctttat tcagcctcag ctctctgcct tgcactttta gaatccttgg
      541 tctagttact atgggaacat gaacaaagac tcaatcttct ctggataatt actataaaat
      601 tcatctctta cagataggaa atgcatagct tgatgaataa tagcacatga ttcaacacat
      661 aaattagaca aaatgctgat acaatgactg ccacttgagt gtggcatcaa cccatataca
      721 gcaatggaac ttattaattg gtcagtggag attgggcatt gtgttctaaa tgtattctct
      781 ttcacgagaa attaacttac gtacaatcat tttgtttctg agccagctca tcaaacaact
      841 tatccatgac agcctccaca tcagcttcac ttgtgctaca gtgaaaagaa taatagaata
      901 tgaaattaat aacacttgaa gccaacatca aacagctgcc tgagcctgct tagctttttg
      961 cccataaaaa agagaacagg atgttatgct ctaaatacaa acatttgatt tagaatacac
     1021 ttaaaagtag agaatattaa ctctcaggta gatgatt
//
LOCUS       KCLA01001558             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25310upu ultra-conserved element locus uce-5295,
            sequence.
ACCESSION   KCLA01001558
VERSION     KCLA01001558.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-5295"
BASE COUNT          143 a           69 c          106 g          123 t
ORIGIN      
        1 ctggagaagc aggaacgtgg caaaacctct aatctcaagg ttttgtttta agcagaagta
       61 tcagcgatct gcaattcaaa gcgagacgtt gagggtgggg agcttatgct tcccattttg
      121 cttttaaggt cacagtgaaa gcttgtgatt gaatattttg catggagccg cctatgacaa
      181 agacaggggt ttgtcagagc gctatgaaaa gggagaggga gaaagatccg tgttagattt
      241 tttaggtata tttgaaagaa tgaaataaaa gaaaatgctt tcaaatcctc ggggactttc
      301 caatttatca agaaagacac attcttccta atgaaaggtt actgaccttc atgaatgtga
      361 cagttcaatt acagcccatt catatgcaga gcagtcgttg ataaaggatt taggaaatgt
      421 gacttgcata gcaagaatta a
//
LOCUS       KCLA01001559             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25324upu ultra-conserved element locus uce-3746,
            sequence.
ACCESSION   KCLA01001559
VERSION     KCLA01001559.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25324upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-3746"
BASE COUNT          217 a          139 c          144 g          260 t
ORIGIN      
        1 taataacaaa cttgaggcac taacaaaagg aaaagaccgt acttctgaga tagccttttt
       61 ccccctcact tttctagagc tatagactct tctgtagtga atttaaggat gataacagat
      121 ctgcatatta tttacaatgt gtatttttta ttgtaggttc tatccttagg agctgatgtt
      181 ctaccagaat ataaactcca gacacctcgc atcaacaagt ttactatatt gcactatagt
      241 cctttcaaag ctgtctggga ctggctcatt ttgttgctag taatatacac tgccatattc
      301 actccttact ctgctgcctt ccttctgaat gatagtgagg aacggaagag gagagagtgt
      361 ggatattcgt gcagcccact gaatgttgta gacttaattg tggatattat gtttatcatt
      421 gacattctaa taaacttcag aacaacatat gtaaaccaga acgaagaagt ggtaagtgac
      481 ccagcaaaaa tagcaattca ctacttcaaa ggctggttcc taattgacat ggttgctgca
      541 ataccttttg acctgctgat ttttggctct ggctctgaag aggtgagtga atgagtaaga
      601 aatcttaaat cgagttcttg cttttttatt tatataaata ttggttttgc ttttcagtta
      661 atagtatgtt tagtggttct gccccatctt ttaagttaaa ctgttccatt gacttgctac
      721 tcactttgta aaagctcata atgcaggcgt gctatgttgg
//
LOCUS       KCLA01001560             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25338upu ultra-conserved element locus uce-4570,
            sequence.
ACCESSION   KCLA01001560
VERSION     KCLA01001560.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25338upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-4570"
BASE COUNT          200 a          196 c          197 g          189 t
ORIGIN      
        1 ctaccagact tctctcactg cagggagcag ggcttgtagg aggtaaacag aaagtcatcg
       61 gctgacagag cattctcaca gctgctgagc ttcctgagct gcaacacctt cctgaaaggg
      121 ctgcaaggcg agctagcaag cagcgaggtc agtgtcagca gccccgtcac gagtgtctca
      181 ccatttccta tgagaggcgg caaggtcggc gctttggaag gtggaacggg gttcagtctt
      241 ggaagcattc cattaacttg tttcaacctc tctaatttca cttgctccat ccatttggtc
      301 cctgtcatat tcctcctggc ctgtaagcca agtgctgtgg tggctgtgga gatggtagag
      361 tccatgattg gggtttcatc aatgacactg aggtctccta cactaccacc actggtcaga
      421 gtaagctcga tcccattgtt ggaatagttg ctgatggggg actgttcgct gctgcatgta
      481 gactgaccac cagggcttgg ctgagatgtc tgttgaggca agaaacacac gtgagaatta
      541 agcaaacaaa ctgcagcaag ggtgggtctc aagagagccc aagaaaacca gacacaagga
      601 ttggcattac acacccacaa gtcactcctc aggaggcttt ctcagcattg attgtaactg
      661 cactgaatgc tactgcaaaa ttcaggctct tgccatacac gaggcatttc tctgttactc
      721 cacaactgct tcacagtctc acagtactat gaggctggaa aagaccttaa agatcatcca
      781 gt
//
LOCUS       KCLA01001561             244 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25354upu ultra-conserved element locus uce-3504,
            sequence.
ACCESSION   KCLA01001561
VERSION     KCLA01001561.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 244)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 244)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..244
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25354upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>244
                     /note="ultra-conserved element locus uce-3504"
BASE COUNT           85 a           37 c           47 g           75 t
ORIGIN      
        1 gaaaaggaag atgaattctt ctactaaagc agggtaaccc taaaagtgtg ttaacatgaa
       61 atactaaata aaatgctact catcgttaat aaatcttatt acacgttttg gcgattgggc
      121 tcccaacaca gcggagattt cgagccatgt ttgaaaatag aaatcttaaa ttgaatcatc
      181 gttgcatgaa tatatgcaaa atattcattt ctagcactgt gagggttgag tgcttttaaa
      241 ttgg
//
LOCUS       KCLA01001562             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25368upu ultra-conserved element locus uce-5445,
            sequence.
ACCESSION   KCLA01001562
VERSION     KCLA01001562.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25368upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-5445"
BASE COUNT          308 a          155 c          112 g          221 t
ORIGIN      
        1 tttaacttac atcttaggta tacttggatt gttttaagtt gtgaaagaca caacatctct
       61 atctcaatta cattcttctt aataactagc atacttcagc ttccagcatg acagccttca
      121 tcaaccaaat atgaaaacaa ggtccagaaa tcctaatcca tggtgcaact aactacagca
      181 attacaattc accccatgat ttttatcact gtaaatgcag cagcgtaaat ttaaaacacc
      241 aaaatccaaa taaatgtaaa aattaactca ccattaccgc tttggaacta ataagtctaa
      301 tttttaagca tattgaagca aatggatact tttatactga tgtgagtaat taaagtacaa
      361 gagcttcaca gactcagaga tgtaatgcag cccttttatc aaaagcagtc actctatctc
      421 agcctgacac ttaacagcat atgatctagt aaacaaatac tttcacacag tacaaaagtg
      481 ccattaaagg ccagaactgt caacacaaat tccattctta caagagaaaa aaatatataa
      541 actgttgatc acctctggtt gccttaacta gcatggaggt tgtcatggaa acatttctgc
      601 gaagttcaca gtgatgaaac acaaacactt ccagtttaat tgctattagg tttagcatac
      661 cagagtttat ttatactcaa agagcattat gataaaacgc agtagaaagt aaagctagta
      721 atgatctagc ttaacaaagc caaaggatta acaaaaaaca aaaacacaaa ggaaaatcaa
      781 gccaaaagat gatttt
//
LOCUS       KCLA01001563            1036 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25384upu ultra-conserved element locus uce-8009,
            sequence.
ACCESSION   KCLA01001563
VERSION     KCLA01001563.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25384upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1036
                     /note="ultra-conserved element locus uce-8009"
BASE COUNT          280 a          240 c          212 g          304 t
ORIGIN      
        1 ccctggcact gtgcagtttc actttgtgct gtactggacc aatcctgttt cctcatatcc
       61 ttagaagggt acgagagatg gagatctcag ctttgctcct tttctccctc tctcacaaac
      121 tcatatccag gcagagtaaa gggttaagca tgaagatctg gatgaggctg cgctgtcctg
      181 tcacagtgct gcccttttgc ctcttcctca cacatccaca ctgttcacat agcctgcatt
      241 cctctccagt taacaccatt aagctttgac ctgaaccaga gatagagcta aatatgtgtg
      301 cacctgtcct cttataatga cctgctatta tcattttcca cccctctttt ttgattgatg
      361 gatattatat gcataatgac cctccggatt ctttcccttc tttttgttag gctttgctaa
      421 agcaacctgc aaattaattt aatatcctct tttggttggg agctatgaaa cgagggctcg
      481 aggctgatga tgcgtaaacc atttgtggca tgtatttaat ctccggacaa tggatagaga
      541 tgttagtgca tgctacacta agttctattt acgctggcta ttaagtgcag tcaagctgaa
      601 ggcaatcgga gcacattaca gggcctaatg ggagaggatg ctacacaaca gtacattaaa
      661 gactgaaaat gaattaagaa ggaagcgtgg tagagaaagc agacaagaaa aggggtctgt
      721 atacagataa ctcttattga cagcacaaat attcatgtac tctgagttcc caaatccaat
      781 tttggtattg gataccactc tagagggaag gttttgaact ccattttcat gcagatacga
      841 gatgacttgc aggcagtcta ctccttccca ccactatctc agcagcctgc ataatccgat
      901 gctgggaaat gcgtcctgcc agctcccttg caaagctaag gcagattgct cttgactatc
      961 taaatcagga caaacttttt tagcctgctc cctgaaatgc atctggccct aggaatcatg
     1021 aatcgtagaa tcatta
//
LOCUS       KCLA01001564             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25399upu ultra-conserved element locus uce-390,
            sequence.
ACCESSION   KCLA01001564
VERSION     KCLA01001564.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25399upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-390"
BASE COUNT          301 a          180 c          165 g          281 t
ORIGIN      
        1 aaaaaaaaaa aaaaaaaatc aaccatggtt ttacttcttc aaaagaaaca actggagaga
       61 atatgatcaa gaagtaggaa actggagtaa tcaaggggtt aaagatactg ttatatgctc
      121 ctccttcttt agcaatgctg ccaaaaagca tctgacagga aacataagat taagtttgtc
      181 ctacctaagt gaacaaagag tgctcagaac aggcaatcag ttcactgcag agtgggaact
      241 tttctaatcc tgctggaatc tgaaccgctg ctcagaaaat attactgaag ttgttttctt
      301 taatttaaca tcttgcttct ggatcatctc attcattttt gtcacactgc agatctcact
      361 ccttctccca taaaggttaa cttaaagcgc caaatataat catgtggaaa atggacatta
      421 ttgattcccg tggtccattg ttcccccatt tgaagtccct gaagttcaag ttcaatctgg
      481 aattacatca tgtctggttt ctcctggtta ccagacagct tgagacgtga ccacagctac
      541 agaaaaaaca aacagccttc ttcacgcttc agctccccta tcgattcaaa cataaacttt
      601 tttcattctc ccaagtatgc ttcaagtatg gaccatggtt aatttagaga ttaagttcca
      661 aattagatta tctaatggca tcttaatgga ttgctgaccc atttcctgtg ggatggcaac
      721 atgcaagtct ggcttgaata catttaattt cttaggaagt gttctgaaga tgtttgccta
      781 gatggagagg aaacaatgtt ctgcacatct ttctgcatta cagagacagg gaaaactatt
      841 aaagatagca atttaaagtg ataaagacca gaagttatga ggttttcctt ctatgaatac
      901 ttttacaatc aggaaacttc aatgttt
//
LOCUS       KCLA01001565             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25414upu ultra-conserved element locus uce-3178,
            sequence.
ACCESSION   KCLA01001565
VERSION     KCLA01001565.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25414upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-3178"
BASE COUNT          251 a          214 c          150 g          231 t
ORIGIN      
        1 gcagatcttt tatctcgatc tgccaaaaat ttgcaagttt gttaggtcat caaagaaatc
       61 taatccacct attgtcttct gatctttctc gtaagatcct tccatatgaa tagaaatgct
      121 tttaaaagaa ccctggctcc ccaccccacc ccccagcatt tcctgtcctc tcaccttaaa
      181 aaacaactct gagaactttt cgaccaaagc agccatgtgg agccagaatt gtttcagttt
      241 tatacagggc ctttgctcac atcctgtcgg gtgttaaaaa tccctcagct gctttgctag
      301 gaccacccgg ctagttctga accacatctg acaaaatgat actgttcact tccagaaccc
      361 atcacacagt tattcttgga taaaaggtaa agcaaatagc agccaactgc tcactgctgc
      421 agaaacaaag accatctagc catttatcaa agcttcagac aaccagcttg ctttaagctc
      481 agccacctct cccattacag ctttaaacga taacacgcta taatatcaga aatgacaaat
      541 ggaaccgggg gcctaaccta tacacaatca atacctgctc tgaaataaga accatcttta
      601 aagtattgac aaagggagca ggagtacgta taaaacggca ctttttcctt gaattgtttg
      661 gtatggccac tgtcaacatt catttgtcca tgacatcctt tttttttttc aggagagcag
      721 caaaacccca gggtgtgcaa ctattgtcaa accattagag tcgccctgtg tctactgttt
      781 atcggagggt aagtggaaag ggccgattgc aagtgacttc agcagagcct tccgctgcag
      841 attaca
//
LOCUS       KCLA01001566             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25430upu ultra-conserved element locus uce-5861,
            sequence.
ACCESSION   KCLA01001566
VERSION     KCLA01001566.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25430upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-5861"
BASE COUNT          127 a           84 c          110 g           84 t
ORIGIN      
        1 cccttcctcc cagctttgaa tggcaattag gaaaaggtta agcgagtgcc tttctcccag
       61 gaatcctctt ccctctttca aaataacagc gttagcaaaa gaaaatccca gattaggcta
      121 acaggtagag gcacggtgca gccctgggag atgctgctgg aagtggggag actgggagaa
      181 tcatcccagc aggagactaa tactcatcat tgggagctgc agctgaggcc catttgagtg
      241 acaggcagcc gggagctgaa agagccgctc atatcccaca actgctggca tgcagacttg
      301 aaagagattt atttcaggat aattagctgg gagtattaaa ggtggcagga aagatctgca
      361 attactgttt agcaaacaga aaggaggcaa aggaaagagg aaaaa
//
LOCUS       KCLA01001567             529 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25445upu ultra-conserved element locus uce-6769,
            sequence.
ACCESSION   KCLA01001567
VERSION     KCLA01001567.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 529)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..529
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25445upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>529
                     /note="ultra-conserved element locus uce-6769"
BASE COUNT          150 a          108 c          111 g          160 t
ORIGIN      
        1 aagttgttgc ctctgcctgc agccattacc agccagcttg acaaggcatc catcatccga
       61 cttacaatta gctatctgaa aatgagggac tttgctaatc aaggcgatcc tccgtggaac
      121 ttgagaatgg aaggacctcc acctaataca tcagtaaaag gtatggagtg tacagtatcg
      181 agtatggcag cctttagtaa cctctaaatt gaaatgttta ccatcgccct ttcttctttc
      241 cctgcatatc aaatccttta aagggataca aatgtggaaa tcagaggtct gcatgagaaa
      301 gacaccatgt gaaggtgaaa taaacctctt attttattat gttttattta acagcgaact
      361 tactgatgca actgttagag ctgtgagtct cctaggtgac gtagacaaag ctggttcacg
      421 ttatgtagca gtgattgcat tgctttgttc tagtgtctca tgtaaagatc cgtttgaggc
      481 gtggcattat tccttcatga ggacacaagc ttttaattct ctggctaaa
//
LOCUS       KCLA01001568            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25460upu ultra-conserved element locus uce-2063,
            sequence.
ACCESSION   KCLA01001568
VERSION     KCLA01001568.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25460upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-2063"
BASE COUNT          289 a          233 c          182 g          299 t
ORIGIN      
        1 agtttataaa ttaacggaga tgtcattttc tgtacaaaaa agaatcaatg catatttata
       61 ggttgttttt tcaaatagat tttacataca tagaatctag agacacaaca aaaaaatctg
      121 tataagttag gcaacgcagc acaggagtga ccaaaagctc aacgcattta ccttggcaaa
      181 atgacagaac cgctggctga aaaaattagc ctttaatttg tttcttaatt tcactgaacg
      241 cactggagat gttttccttt agtggaattc attattcctc tttgtgtttt agagttactc
      301 ttatttattt ttgccatttt gtttttacac caaggagact gcagtcaaat aacactcagc
      361 aactcatttc ctctctttgg gctgaaaaat taaacagata ctaaattatg acagtgaatt
      421 tagaaaggag ggctccaagg gcttgaaaga acatgtctga gataatatga tgcttctaag
      481 aatattgcaa tcacatccaa gcaatcaccg aagcgtgcca tgtaactacc tcctcagcta
      541 atatgctttt ttctccgtga tgactaatca tgttctatta aacagcggta atgctggaag
      601 aactcaacta tacaagtgta atgaagccag tattctcccc ggacagatta gctacaactg
      661 atttgacaca taccatcata ggagcttcaa acctgacaaa ctctgtgctt gcttctgatt
      721 tatgccgtca agctcttcag agaagagaat gaaatccagg cgttgtgttc ggtagaggtg
      781 aaatgtactg atgtgcttaa ctggcagtta cagaaagtca ccagctctcc ttccttctcc
      841 tctcacttgc ctctccctcc acccctttcc tccatgctca gggagcctgc gttgctccac
      901 ccacggacaa ctgctctccc atcgtcctgg tgccaggcgc ggcgtgtcct gctcaaccca
      961 cttcttctca cccgcttgtt gccatcagtc aagagctgtc act
//
LOCUS       KCLA01001569             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25476upu ultra-conserved element locus uce-4842,
            sequence.
ACCESSION   KCLA01001569
VERSION     KCLA01001569.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25476upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-4842"
BASE COUNT          271 a          215 c          194 g          247 t
ORIGIN      
        1 aggagcactg taagactgat ggacagagat aactctgcac ccagaggaac aagccaacca
       61 gagcccaaac tcgtgatgca gccatccaag cccttctcct tgtctgtcac tgctcccatc
      121 tctatcctgt cccatggtgc tccaagaccc ccacagacca tcctacatca acactccccc
      181 ttcccagtca ccccaggctg gcatcaccct cccccagatc catccagcag ccagggtgct
      241 gccggtccca gcaacactca gagatgagga agcagttgat tttgcagcca cttgaccaga
      301 cacactggtt gaagcaggac tgcgactggg aggggaaaga gctgaggatc cttttgagat
      361 gccacctggg actggcggca cttctactaa tgcacagtga acagctaaat catacattat
      421 tgatttgtca gacgtatttg catataaata agcatgatca ttcatacaaa ccttaatgtt
      481 gttgttctcc ctttagtgtt gtgatcacag atgaatgact ctagttagac acaattcagg
      541 aaagcttgta ccactgcagc gaagtaagct gctgatttaa aactacattt attggagcat
      601 gtaagtgtga cagtctattg gtgaatttgg ggataattag tctaaaagac aagataaatg
      661 aatcctgaaa gtggtattgt gatgaagaaa tgatccctcc atgctagtaa agctttgatg
      721 ctagaaatat tgtaaatgat aattaactgg gaaacacaga ggaattatat ttcaattgtg
      781 ttttcaaaag gacttagaat gttacagaca aattgattgg gttttccccc tcccccagcc
      841 ctgtgattat gaaagattgt ctaatttaca gcatgaacta tgaagcctat gacaaatcgc
      901 tggcttgctt ttatgcatct tgtttgt
//
LOCUS       KCLA01001570             835 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25492upu ultra-conserved element locus uce-7727,
            sequence.
ACCESSION   KCLA01001570
VERSION     KCLA01001570.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 835)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..835
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>835
                     /note="ultra-conserved element locus uce-7727"
BASE COUNT          223 a          187 c          222 g          203 t
ORIGIN      
        1 tggaggattt ctgtgtgtct gcgctatctg cgacgagaga ctaagaaaca gatcgagttg
       61 ggctagcaaa gaagcgtcgt tgccacctca gacttcctgt tcaggattca gtcgagtaga
      121 tcttgtttat gggtcagaac acctcaccac tgcgaggatg ctcaggcact ggcagcaccg
      181 agttccacgg tgccgcacat taacaagaga aaagtgtgat aatactcctc ggagaacagt
      241 aaagcagagc tctgcaatgg ttaactggaa ttttataagc acattcggtg aggaactgtt
      301 ttgcattaca tgagttgaat accttagaga tgacacacat ctgcaggcac tttattaaat
      361 ccttagtcag cacttttcga cctgatgaga ttacttcttc atttgactgg agaaagggaa
      421 gcgaagatct cgtactggcc tgcagaattc tttctgatgt ttcaccttga gagcaggaga
      481 aggacggtaa gatgctcggc aggacgatac ggacccggag aggcgccggc agtcattttc
      541 ctgagtagga cctttagttg tgagggattc gtttagccta aactcgctga aagaatagcg
      601 atgcaaagta aatagcaggg aaacaaaata ccagctcgga gataccatca tcccgaccaa
      661 gttgtgatag gttgcagtgg agattttcaa tgaggaaagg caatacgcgt tctgcacctg
      721 ggtgcagtcg ggtggcttac gggacgtctt ggggtacgag cactcaaagc acttgagcca
      781 tccccaccta ggggcacagg gcttctttct tcccctccga ggcccctaat cgtgc
//
LOCUS       KCLA01001571             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25508upu ultra-conserved element locus uce-7876,
            sequence.
ACCESSION   KCLA01001571
VERSION     KCLA01001571.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-7876"
BASE COUNT          350 a          212 c          196 g          198 t
ORIGIN      
        1 gagacaggag tctagaatat tcactaataa acgggataaa ttccactggg atcctgtccc
       61 aggcatggga actgctacac tgctaaagag aaaatacaag cagaagatgc gagtactctg
      121 catcagtcag gactcagccc atgctgcaca actgatccaa tttataggaa aagtcctgga
      181 tcacccttcg tttaaacact tcacaatgtt tctaaaaata cataaaaaca taataaataa
      241 aattcaaaac aaaaagccac atcgaacaaa aagaaagctc cacagcagca agaagcacat
      301 gccaggtgct ggctgatgca cgagatggca aatgttaaca tggtgtacaa caagactatg
      361 tataagaagc agattcatgc agttagcact tgttcacctg actgcccaac agaatcagca
      421 gtggagagag cactagtgga cctggaatga cgtcgagaag ctgcaagtag aaggaatggc
      481 aacacccaca ggattaacac acatttaacc tgagacacaa aatgccacaa tccaaaggga
      541 atgcgtgtga ctgctaccag taaatgtgtt tcatagtgac agggaaatga cgctgcgtat
      601 gaatgcataa cagatatagt gcaagcccca cagtgatgcc tgtctgtcct tcccacatga
      661 ccataaacac aaggcacaac aaaattcgtt tgcaacagtc ccaaactcag tgcagttcag
      721 caaaataatc ccagtgcaca tcagtcatgt tccagaccca tcatgagaac atggaacaca
      781 ttgctacata acagggttta gatgtatctg atctaaaccc caaagtgaag ccagaatgaa
      841 tggttaggaa ttgtgcttgc aggtggtttt ccacaacatt ctagcctacg cataaaaaac
      901 caacattaac aaagagaatg agtaaccaca ttagcagaaa gagtcataca gggagg
//
LOCUS       KCLA01001572             104 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25523upu ultra-conserved element locus uce-4398,
            sequence.
ACCESSION   KCLA01001572
VERSION     KCLA01001572.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..104
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25523upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>104
                     /note="ultra-conserved element locus uce-4398"
BASE COUNT           45 a           14 c           26 g           19 t
ORIGIN      
        1 aaaaaaaaaa agaaaaaaaa taacaacgta gagtctagac agaagagatt gggttgaaat
       61 ctggaagcta ttcagtgagg ctacggcaca tggcagcttg actg
//
LOCUS       KCLA01001573             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25539upu ultra-conserved element locus uce-4680,
            sequence.
ACCESSION   KCLA01001573
VERSION     KCLA01001573.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25539upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-4680"
BASE COUNT          272 a          189 c          199 g          251 t
ORIGIN      
        1 attagcacag aatcctgaat ttgttaataa aagctgacaa ccattttgtg catttccaga
       61 gagtctgaat catcagtcta ctgaaaatgg aaaataaagc tgaaatcaag gcgactcttt
      121 ggatgtccag gcacaacgtt ttacaaaaga ttggttgtga tgcatttctg ttcctcttac
      181 agcttgcaca tttgtcccgt tttcttttca gattttaaga gaggtttagg aaatgcaggg
      241 gaatctctcg gtggctttag cacaaaatta taatagtaac tggcttcctc ccccttccca
      301 tcccccccaa aatagagcat actactgaaa ttatttaaat tgactgagcc ttttaagcaa
      361 gtaaacacat tttaactagt tttttttccc aatccttcca ttcatgccta ctatagaaat
      421 tagccttcac tcttccttca cttacacatg gatacacaca cttgcatgga cacaagaaaa
      481 atttcttttc tcctgtcagc attcctaccc aacaatagtt agattagtgg aaatgagggc
      541 ctccgcagag aaaggacatt cagccacaga aggctccctg caggaacagc tggtaggggt
      601 taatggctgc tgaacctcac agccagggcc tattctctat tgtgtgttca actcctggga
      661 aggagggaga cttgtgacag cttctggggt gcatgggatc agaggtatag cagttaggtc
      721 agagaggtag tgttcggggg gaaaaggcta gccgggaatt gcaataaaaa tgaactctgt
      781 ggcggggacg gcagaggctt gaaatctgca aaaattgggc acaaattgcc acggggaaac
      841 agtaaaggat tattcggtaa cgtggcttct aaccttttaa caactacgat atgaattaaa
      901 agaacaatcg g
//
LOCUS       KCLA01001574             320 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25554upu ultra-conserved element locus uce-4161,
            sequence.
ACCESSION   KCLA01001574
VERSION     KCLA01001574.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25554upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>320
                     /note="ultra-conserved element locus uce-4161"
BASE COUNT          101 a           64 c           54 g          101 t
ORIGIN      
        1 gaataatcag tcatttgaaa aacactacat aaacattttt ccggatgcaa ttttcagtcc
       61 aaggatacat ttcccagtag aaatcagcag ctaaaaagga aatcatttag tctccataag
      121 tgccaaattg tatcctgatt tttcctggtc tggctcgact ttcaaaacta gtggttcaac
      181 ttctgcaatc tttcacccaa cgactatata aacacatcct tgtaagacag acataatcct
      241 tgggtgggcc aatttatgtt ggattatgaa aatacttaaa gtacagaatc gtgtaatgac
      301 tgttgtcctt tggtttgcgc
//
LOCUS       KCLA01001575             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25568upu ultra-conserved element locus uce-4766,
            sequence.
ACCESSION   KCLA01001575
VERSION     KCLA01001575.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25568upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-4766"
BASE COUNT          229 a          247 c          218 g          295 t
ORIGIN      
        1 agtaagaacg tgcctgcaga tagatgggtc atcaagtcac ttgcccaaac tggctaccgt
       61 aagtcaaaag ttatgctgtt ttaatgagag ctttgtaatt aggttgttca tttgctgggt
      121 gaaattgtca ttagtagagg aaggtttcat taattcacct tcttatataa agcccctaat
      181 gaatcgctaa cgttcttctc gataccggcc acgattattt ctgcttcttg ccctgcaaac
      241 atcttgttcc cgatgaggtt tgtctgccgt ccgaaacgca atacaaggga tcgccgtata
      301 ataacgtctt ctaattgtct tagcatatgt tgcttttatt aggggagaat aattgcattc
      361 ccgccatcac ctacaaagtc ctctagaata tcagatggaa atggcttcac actgagtgca
      421 caagtccttc ggagccgtgc cattttcccc ttggctgcct cttgtccccc ttccgctgta
      481 aagttcacat tgaagtgtga caagagacac ttgacaactg acacatgctg gatcttatca
      541 gcggcgagtg cagtcacggg ccctgactga agagcgattg tcatttctac accatttatt
      601 cctctcccag cctcattgct cgctccctgg ctgaggaaat tttccctggg aagggactgc
      661 actcgctgta ttttgctgtg tggctcccag attttttttt tagccctttg tcccccctac
      721 gagaggggtt tgctacccac aggcacactt gtaacgcgct tcctccgacc tgttcgtgtc
      781 aggacagctc tgagctgatc caagctcata aaagcaaccc aacagagcgt tggtggtgct
      841 gtaacatctt ccttaaatcc tctgccttgc taacagccag tgattccacg acctcgaatc
      901 aatttatcag ctgttgtatt ggaaagggag agaaatcagt ccggtgttag ctggtgatgg
      961 tggttctgcc gtggcttcaa ctgactctt
//
LOCUS       KCLA01001576            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25583upu ultra-conserved element locus uce-7700,
            sequence.
ACCESSION   KCLA01001576
VERSION     KCLA01001576.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25583upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-7700"
BASE COUNT          287 a          221 c          210 g          297 t
ORIGIN      
        1 aggaatgccc atcccttcct tacttcttcc aacaaaacag gtgacaaaag atttttgcgc
       61 tcgtcacaga gctctggagc cagatctgtc tgtctgtgaa gatcctgagc tgcttggtgc
      121 tgccaaggtg ttggccgtcg cctcacccat gctccaggaa ctgacagcag tgctggattt
      181 ctgtgtgacg gctggccaga atgacataaa atacaaggca ctttgtctag tggtgtcatt
      241 ccaaattttt ctgtgacaac aggtcaattg gctggcctag tgccattggg aaactatgtt
      301 tggatgaaag caatactatt tcttgtttgg agccttatta caaatgtctg ggtttaagaa
      361 acttgtgcta ctcccacatt agcgctctag acaaatcttg aaccaccttt gtggcgaagc
      421 ctaacaaacg ctgtcacttt gacctaatcc acttttctgc acagctgtgc taaagtcacc
      481 tttagtttta tcacatttta atgcaaacaa ggccggaagg gtgcttgttt ggattgaaga
      541 agctgtgaca attcatctga atgggaactt tagtaactgg gaagaaaaat gtgacaggga
      601 gctttatcac tgcattgtac acaacaatct gaaaattatt gcttctttag ggctctattc
      661 tcttcttgag gcctagcaca gtctatgcta agcagctaga cagaactctg aatggtttgc
      721 cagccctaaa gacagatttt aattctattg tttgtgggta tccctgactt tcctaagagg
      781 attcaaagac agactgcaaa acaaggcgac tgacataaga cttcggccag tctttaaaat
      841 tcaaacagca aaagcagctt tctccagtgc tctgaaactg gtcaaactcc agtgctgttt
      901 gctttcaaaa tttgtcaagt tcactcaaaa ctaaacaaac ttgcagaaca tgctttgtta
      961 agcctttaag aagtttactt aaccactaat ttcctgtaac agtgggaata aagca
//
LOCUS       KCLA01001577             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25598upu ultra-conserved element locus uce-7536,
            sequence.
ACCESSION   KCLA01001577
VERSION     KCLA01001577.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25598upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-7536"
BASE COUNT          265 a          192 c          220 g          208 t
ORIGIN      
        1 aaacaaggag aggaggaggc ttggcatcag aacagtaatt tatgatttta ctggcatatt
       61 atcattgggt aataaagcaa cttgaaactg ccaattatct cataagaggg gtatcacctt
      121 ttctattttg aatgactcca tcgataaatg caggttctgc ttgctaacac tccatcacat
      181 aatcagcact cttactgcag gagagatgag tgcaagaaaa aagagagaaa aacaaatgca
      241 caagcccaca aacacttgat gtgagctaag cccttggctt ggcaacagag agagaagagg
      301 gggctgaggg ggctgggagg aattgcctgg agcagtcagc aggtcataca cgcaccgagt
      361 gcaacagcaa actcagttta caaagagaca tctgttctgt tactccaatg cattgtggct
      421 aattacatcc tggcccatct gtgaaatgac agccacttat tctccagtga accataaaat
      481 ctgtacatgt tccatgtggg caatggggag taagaggagt gcaggggagc aaggaagggg
      541 gaggatggag agggtagaat gggagactgg cactggcaaa gcatcaggaa aatgtgccac
      601 aagcctggaa agggcaaggg gaagcaggca acaaagcact gccatcttga tgcagggctg
      661 caatgcctgc tctaacccaa acctcctcac tcctcttctt tgcaggggaa gagaggcagt
      721 gacagcagca gaaacaacac cacacctgtg tctctgtgct tcacttgtag attttcacag
      781 cacttttgcc attgctgttt acacctttct ttgtctctgg tcccacagtt ttgttagagg
      841 ctattctcca tgacactaat ttcattttag acccaaggac atgtc
//
LOCUS       KCLA01001578             983 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25614upu ultra-conserved element locus uce-1873,
            sequence.
ACCESSION   KCLA01001578
VERSION     KCLA01001578.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>983
                     /note="ultra-conserved element locus uce-1873"
BASE COUNT          347 a          153 c          182 g          301 t
ORIGIN      
        1 gaaaaatgca aagaataaca ctgagtaaaa ataataagtg ctattcaaat gcaatagaag
       61 cccgtagaaa gcgggtcctc gcgtttaaaa agttattgta ttcatggctt catttatttt
      121 ggtggtggta gaatgtaagg aacaaaataa attagaacca aaaatggaaa agatggaatt
      181 aatatacagc agggctgtga atgatttgtt tctcttccca caatgcccct ctccagctta
      241 tctgaacact tagctacatt tatttccata aagaatgcat tttattctga aggaagatag
      301 gatgtgcttt ttaaaataaa gcagaaactt tattaaaatt caaaagaaaa gtaaacagag
      361 atgatttgag aagctttatt catttatttg ggcaaacact gctaaaaaca tttaggtgca
      421 ctgtgtgttt aaaaagtaat aaatagctat tgtgcttact tcataaactt gtcagagtgt
      481 cttcatttta ttttcctgaa caaactgaat ttctgtactg ctcatcccca gccagttaat
      541 aaatacatca ccctaaaaag tgctgtggta ttaaatttac agcagataaa atatggatga
      601 agttgctgtg cttcaggtac gtcaactgtg atttaatatc tctgactacc cttatgagga
      661 gtaaaagatt actcggctgc tccaacagca agatactgac ctttgctccc aagtaacagc
      721 cactcagcaa atagtaccaa atgaagaagt agaataacat atagatttgc cataacaaaa
      781 aattgatcta aatccatata tcaaatctgc tgatcagagc tcttcagaaa aagtacctca
      841 taatctttag tgtggaattg caaaaacttt tggtgaaaaa gaaactgggg ggtgtatttg
      901 aagatgcaca atttcttggg gcagaagtgt tagttgagtt ttatatctgt ttatgtgggg
      961 tggatatgta tgtatacaca tat
//
LOCUS       KCLA01001579            1067 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25628upu ultra-conserved element locus uce-7304,
            sequence.
ACCESSION   KCLA01001579
VERSION     KCLA01001579.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25628upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1067
                     /note="ultra-conserved element locus uce-7304"
BASE COUNT          317 a          198 c          250 g          302 t
ORIGIN      
        1 tggtagctgt gtcaatgaaa gaaccattcc aatgaataaa acattaggat gtacctagtc
       61 tgtccgctgt gccagaaaag gacatacagg ctgcttttgc tgaatgcaac agaagaaatt
      121 aattttaact ggatgtctga aatgtcttca gctgctcata ttggtaagtg tttctatagt
      181 gagcctttgt aatgactgaa aggtgctcag tatagcaaag atccggtagg aacaaaatct
      241 ggcattttag aatttatccc catcaccttg ttttggaaag ccttaaacaa ccatgaagga
      301 tgggttttat ttagattccc cccttttcat caggttttag gcctctggct attggtatcc
      361 aagtagttaa aactacatca gcactaatag ctatgagctc atcttgtata agcacatttt
      421 tagttaaaca ccgcaatctt ggaaaaaaat gttagtgtgc ttaaacaacc tggctcagaa
      481 tagctcacaa tatgacgcat accacaggaa ataaagtggt atgaggcacc tacaaaatat
      541 ttttcaaaca agtcattgaa gctgtaagcc ccatgcctca gctttaggaa gtcacttatt
      601 aagaatcaac accagccgtg ccaagctaag ctcttgctct tggtgatttt ccaattgaat
      661 attcagggcc ctgtctcgga cttgttttca gggaagtaca tgcctggaat gttagcaagc
      721 tatttgctag aaaaaatgcc cacaacaggc ccaatgttga tcacattaat gcgtttgagt
      781 gggtatagag tgcaaatgat tgaaagtgct tccagatctt ggttgctggg gacaaagcag
      841 gctctgttct ctgatctgat ggtcattttt ttcagcggag gatgtggtgc aggaagaggg
      901 aacagtgcca atctctgtct aatggctcca aacagggcct gggtctggct ctttggatgc
      961 tgatgagtgg gaaatgaaac acagatgggt cagatgggta aggagagcgg ggattacagg
     1021 tcaggccaag gagttggaat aaattaagtg cttatgaggt acagaat
//
LOCUS       KCLA01001580             359 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25643upu ultra-conserved element locus uce-5148,
            sequence.
ACCESSION   KCLA01001580
VERSION     KCLA01001580.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 359)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..359
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25643upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>359
                     /note="ultra-conserved element locus uce-5148"
BASE COUNT           84 a          105 c           88 g           82 t
ORIGIN      
        1 gcatttaacg cagccagagc cccgggaccg agggggctgc catccctccc ggctcctttc
       61 ttctgctccg ctcgagctct tcccagcctg cctccctcct ctctgcagag gagcctttca
      121 tgctccctcg gcagactgac ggcttgacaa gttgccacga gtgacatctg atttgtacga
      181 atttcaagac taataaatct acctgtcaaa gcggagccgc tcaaaggagc cgagcccagc
      241 gggtacagtt taacagagct cgggttgatg aaactggagg atggaggaat tatatctgtc
      301 acaatccacc cacattagtt ctggggagat gttggcaact gaaacaaacg tctttcaca
//
LOCUS       KCLA01001581             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25658upu ultra-conserved element locus uce-884,
            sequence.
ACCESSION   KCLA01001581
VERSION     KCLA01001581.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25658upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-884"
BASE COUNT          260 a          167 c          143 g          249 t
ORIGIN      
        1 gcaaaaccac attgctactg cagcgccatc acggccagtt tttagtgcta aaaaatccct
       61 gaacactatt tgcgacccgg ctaattaatt tcacagcgtc tccctacgtt ctgactgagc
      121 tcgcagaact gcaccccgaa actgttgcag aatctgaaaa ggaagaaagc aaaaggcaac
      181 tttacaagca cctgattaac ctttcccagt cagtagcaaa gataaatata ccccggatac
      241 accgagggga aatgaattac ttttttctga tacagttgaa aaagttgacc cagacttgct
      301 tgctttttgg ttgtgtacct tcttctcaac ataaggattc ttctagtcag tcaaggggca
      361 actcacatgc caccatcttt tattcaaagg caggcacaga tgttccttct gcaggggagg
      421 ttttaattta tgaaaatgat attgtttatg catgaatgca ctctgcataa cacacagtac
      481 ttccatctga tgagagaaat accacagaac cagtgccaat gtcaggaaca tattctgcaa
      541 atttagttgc ttaaatgttt aatgaatatt tggaaggcat ttccaaagca caagaaacct
      601 ttccaattac cttttctttt tccacagtta ataacaaaac ttctctagct aatacaattt
      661 acttaaaaga tatacctagg ctatctgaat gcttgctaat gtgacatttt agataatatt
      721 ttaatgttat gagcaattta ataaggaaaa ttaattaggc accttggtga agagaggctc
      781 cattttacaa attgcttgtg agttttgtta tttcagtta
//
LOCUS       KCLA01001582             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25673upu ultra-conserved element locus uce-3784,
            sequence.
ACCESSION   KCLA01001582
VERSION     KCLA01001582.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25673upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-3784"
BASE COUNT          194 a          159 c          215 g          212 t
ORIGIN      
        1 tttctccctc cctgcgagtg cttggaaagt ttctggagtc tttgaggaga aggaatggct
       61 atcaagtgct tgatgtggag tgtagcagta ttgatgctgg gtggggtggg ggagcagggc
      121 tgctgtatct cttccagagg attggctagt ggtgtgtctc actcccaggt gaagtaggaa
      181 atgctgccaa gatgatgctg attgtgaaca tggtccaagg cagcttcatg gcaacaatag
      241 cagaaggact gactctggct caagtgactg gccagtccca acagaccctt ctggatatcc
      301 tgaatcaggg acaacttgcc agcatcttcc tggaccagaa gtgccaaagt aaagttctct
      361 tacgttgttt tattataaga catttaccac aacctagcag tgtttcatat aatggcagaa
      421 gggagaacat aactgtcctg tcttcatcag gttgggatcc tgggtatttt aaacattttg
      481 caaatgaaga actgagtttg attccttccc attcacagac agggcatcct gaatccccct
      541 caaggtttgc cttgtccaca gtctgcttac gacttgagtt cacagtgagg gtttcaccag
      601 agcagggtag taagtgtaga ggaagctgct tagaaatctg cactcattgt gtctgtgggc
      661 agcaacatcg tctgttgtgg ccaaacaaag gtagtgagca gcagaagata agagtgattg
      721 ccatggggaa gggaatgtta gtgttgcatc acttgtcctg gtagtggggg ctccacttgc
//
LOCUS       KCLA01001583             895 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25689upu ultra-conserved element locus uce-5090,
            sequence.
ACCESSION   KCLA01001583
VERSION     KCLA01001583.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 895)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..895
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25689upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>895
                     /note="ultra-conserved element locus uce-5090"
BASE COUNT          246 a          190 c          190 g          269 t
ORIGIN      
        1 cttagtgtaa aaaaacatac agttgtgcac tctgtctgtt caggggtgca gaagttgcgt
       61 tgttctagaa aagttttggt tacttctgtc cccgcgtagt ccctaagtgc acatggcaca
      121 ctcgtgactt tcttggtatt tcctttctcc tgctgaattc tgtattgttt tcttgtttat
      181 agggtgctac tagacagagc acattcggac tacgataata catttcatca gctggatttg
      241 gaaacgtttt cctcatcgca acactcttca atcagtcaac ttgccaatac ctcagaaaca
      301 aatacctcgg acaaatcttt ctcgaaagac ctcagtcaga tactagtcaa tatcaaatca
      361 tgtagatggc ggcattttag gcctcggaca ccttccctac atgacagtga caatgacgaa
      421 atctcctgta ggaaactaca caggggtata aatcgaacag gcacagcaca acccgggacc
      481 cagacatgca gtacctctat acaaagtaaa agtagcagtg gttcagcaca tcttggtatg
      541 ttcattttga caaactcgct tttagaaatc ttaaccttgg ctcagaaaat ccagggtatc
      601 actaggtcat ccacagttta cgtcatggtg tggtttaatg gtaacagcct gtcttcgttt
      661 tcctctgttt gccacgcaga atgttaattt gttgctaaca gtagcgtact gcatctcaag
      721 tttacccaaa tactgcctgg tgtgtaattg tggcttgaga aacacgaagg ttgaagttgg
      781 ttctgaacac gcagctatgt gaacttgttt ggtacgaata ctgcattgca aatgtatagg
      841 tgcagtggtg gggagaagtg tttggttaaa actggtgttt aaaataccaa catgt
//
LOCUS       KCLA01001584             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25703upu ultra-conserved element locus uce-1756,
            sequence.
ACCESSION   KCLA01001584
VERSION     KCLA01001584.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25703upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-1756"
BASE COUNT          211 a          139 c          130 g          205 t
ORIGIN      
        1 tactgatact aggaaatggg atgaaatatt ttacggaaaa gataaatgta caatcctgag
       61 taaacatatt atactttcat ttgttatgtt tgtgcattca tacagagagt agctctagta
      121 cacagtgaaa tcccttctgt ccaaaacaga gattccattc cagcacattc tagctatgag
      181 tgtgttctta caagaagaaa aggtgaacta gctggggttt tacaagttat cgcatgcatc
      241 tcagtgtttt actctgggag tcaacaagac tactgctgct ttaaggaaag atggtctcca
      301 aacagtttat gaagtgatag atcatatata aataggttgt ttgctctcag tacagatgcc
      361 atcattacta actactttca ggctctttga gagctaaata atttcgtaat gcatcattga
      421 acatttagat gcttcgatag cagatggttt caggggtcca tctgctcaca gcaatgtttt
      481 caacaagccc ccttcacctt caccaaaagg ttcagaaaca ttagaatatt cattcctcac
      541 cacaggtgcc tttccttgag cctccccaca cacaagcata gtgggtcgca cacccggaaa
      601 gacagaggtg ctttctgaaa tatgtgactt aatctattgc ttgtagatta cttctgtcag
      661 cacatgaaga cagcagcaat attag
//
LOCUS       KCLA01001585             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25719upu ultra-conserved element locus uce-1453,
            sequence.
ACCESSION   KCLA01001585
VERSION     KCLA01001585.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25719upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-1453"
BASE COUNT          210 a          182 c          139 g          199 t
ORIGIN      
        1 gccgtccctg ccccccgacg gaggtgccat gaggctacgc agcccccgtc acgcctcgcg
       61 ccctctcggt ccaaggccgt gggcagctct ggcattctca ccattttttc aagaaacaca
      121 ggggtttcag acctcatttt ggggggaaga gaagccatcc ttccaaaatt atgaattgtt
      181 tataaatcaa gctctatgac ttccacattt atggtaccat tcctgtaaat aatgaggccc
      241 atgacttgca cacaatacag ccagaaacca cagcacagct cagttttaaa atgattaact
      301 gctgcataca gctatgactt tatttgtaag gagcagttag gagaggcaaa atgagtatgc
      361 agctttccat tatatacagg catattttca atagccgtgt gagtcttttt atggctccat
      421 ttatgtcaat gtcctagtgt catctgtaat aaactggcag caattagagc cacaataaac
      481 cccataatgc aacacaaaca acaggaagtc tcccagtacc ccaacgctct aaatttacat
      541 ctccccttcg aaagtctatt tatcaccaga gtttgcaagc ccgtctgcta aagagcgctc
      601 taattaagat gtatctggtg aacaagtgtc tgcttttcac cctactcttt taacatatca
      661 tgtatgcact gagcaatctt cgtcgggtct cataatgaga aaactgtgat atgcaaaaac
      721 tctgtgaaat
//
LOCUS       KCLA01001586             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25734upu ultra-conserved element locus uce-6143,
            sequence.
ACCESSION   KCLA01001586
VERSION     KCLA01001586.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25734upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-6143"
BASE COUNT          183 a          140 c          173 g          211 t
ORIGIN      
        1 cggtggagtc atcatccctg gaacagggaa atggttgact aggcatggtg gggttcagca
       61 gttggactgg attatctagg aggactcttc caacctttat gattctccta acagtgtttt
      121 atatgttctt gtctctgcag actgaagaag tcctgaagat tgatggaggg ccatgctatt
      181 caaacagcag gcgttgctga gacagaagct ctttgtgcta ggcagccttg ctattggaag
      241 tctcctatat ctagttgcca gagttgggag cttggatagg tgagtcatta ggaagttact
      301 ctcttaatta taaatgggct gggatcatct gagcttttgc ttgatgtgat ttttttttag
      361 tgtctactca tacacagaaa gacagacaga cggtagtagt tttcattgct ctttcctcct
      421 ctctggagaa gacagtagga aaaaggagtc acagatcatc ctgtcagagt atttctgcct
      481 gtccgtttgt attctcgtca cactgacact tgtgttcaga gaagaagtcc aacagcatcc
      541 agaaaaatcg ccactgcggg agctggtttg tgcctgcgtg catctgtgca ctgaccccca
      601 gcttcagcga aacagcaagg atgtatttat acatcatctc ttctaaattt atgagcaagc
      661 aattaatgtg ctacagaggt agttaaaatt aagtatgagc ctgcaga
//
LOCUS       KCLA01001587            1254 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25750upu ultra-conserved element locus uce-127,
            sequence.
ACCESSION   KCLA01001587
VERSION     KCLA01001587.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1254)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1254)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1254
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25750upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1254
                     /note="ultra-conserved element locus uce-127"
BASE COUNT          359 a          243 c          232 g          420 t
ORIGIN      
        1 aaaaatggga caatatagca tcctcgtaca actcatctgt ttatacatca cacttgcctc
       61 acgggccctg attagcttgt tagcagggag acaggaagaa gtgcaatcag gtttttatga
      121 ttcatcattt ctgttccctg ttcgggagac aatgtcactg ctctttgcca atcatagacg
      181 gtggctttcg agtgccttag ggagatgcct ttttaaaaga tgcgctctgg gtttctgaag
      241 gctgagccac atttctaaat aacagggaag tcctggagtt tgttttgatt gtttttgctt
      301 gttttgtaat tgtatcttaa caatgctttt atgtttgctg cacgtatgcg aaaagaaaac
      361 acatctccag tttgtctgca atcctgtttt cagtctgaag tgcagaaata aattagccat
      421 ggtacctgga atattttctg cactacaaaa ggcaaatgta agttttatta agttgaaaag
      481 gatacattcg cttctcctga ccttgatttt ttagctatat tctctatacc cctgctttag
      541 aagtattatt cttcatccca tccaattacc atttctatca gctcctctga aagattatgc
      601 tttttgggtg ttcttctgta gatgtctttc cagtggcttc acttgatgaa tgtgacaagt
      661 tttgtgtttt ctccctcccc tcattgaatt gaaaagtttt ttgataaata caggccaata
      721 agtgcccaaa ggcagtgttt caatggctgc taaatctttc aaggttagga cttaacctcc
      781 gttctcccta attcaactgc aaccttcagt ctggagccaa tcaagaatat cagatgatac
      841 ttaaacaatg aaggatttct gatattcagg tacagcctct gttcaatagg attgcaaatt
      901 ctttgtgtga agaaagtcgg ttttgctcta aagtactgtc acaaaaagtg aaattaccat
      961 ttgcttggaa tgatgccatt catcattgtc agaatactaa gcattgtaag tagctaggcc
     1021 tctccaaatt aatgccttgt tttgcatcgg ctaaatttcc caaatcctcg aggatgggtc
     1081 atacaaaact catctcaccg ttttaattta tcaatccaat atgagtgcag tgaaagggag
     1141 cttcattcag tcttagctct tttatttaca gtctaattct aaaagaaaag gaaataagat
     1201 atgaaaataa gttggaaaat aagataaatc tctctgcgaa atcacaagat ctac
//
LOCUS       KCLA01001588             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25766upu ultra-conserved element locus uce-1008,
            sequence.
ACCESSION   KCLA01001588
VERSION     KCLA01001588.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25766upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-1008"
BASE COUNT          231 a          180 c          150 g          200 t
ORIGIN      
        1 tactgtgata cctttgatct ttttaacaga ccttagaaaa aggagaaggg tcctgtgtac
       61 tgtgccgcgg catcgctccg tgcctgagcg gctataaaag gtgccctttg tttcctcagg
      121 caggtagtaa ctgatgagaa gtgagctgcg tctcggagaa agacaactct aacacagtga
      181 tatccatttc cattaggcaa ataaacaact acaaatcatt cagatgatgt aaacgctcaa
      241 ggatatttgc ctccccatag ctgagctcta ggaccatccc gagttttaag gatgcatttt
      301 cacgggagga cctgccggcg ccccgacgca ctgggttttc acgtttttct aatgacaaat
      361 ccccctcttg gaagcaaaaa ggcaaataac tgattataag tgcaatgaaa gtctcttgaa
      421 tttacatata catttacttg taccctgtca cgttttctta acctctaaac ctccgcacaa
      481 cggataaatg aacttgtctg ggattgcttt ttccccaaat tgcagcctat attttctgca
      541 gcgccgatgc aattatgcca cctcgattgc ctcacggtgg agcacaatgc aaaactttgt
      601 gtatcgagaa aataaagccc agaaaattgc ctgtgacacc cagcagcaca aagacagcca
      661 cgcttcccca gaaagtggac ggaataaaag tagacagttt ctattaacaa taacaagaca
      721 aaatacagag gccctttatc tcttaaaatg taaatttata c
//
LOCUS       KCLA01001589             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25782upu ultra-conserved element locus uce-4648,
            sequence.
ACCESSION   KCLA01001589
VERSION     KCLA01001589.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25782upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-4648"
BASE COUNT          212 a          170 c          214 g          216 t
ORIGIN      
        1 tttgtaaggt tggatttgag gaggggacag ggaatcctcc gtacacagcc agccctgcaa
       61 tccagtatcc ggatttgaag ctggtattta aagagggctc ttgctttact taggagatga
      121 aaggcaaatg ctctctttta aaaatgaagc catgctgtgt tttgcacctt ttgacactta
      181 ttaactcagg tcattaaaaa gaggctaatt aaaaaagaat gtaaaacaaa agagtcattt
      241 gtctatcgcc gagctcggtt cttcatgtcc gctggctgga ggcatcctcc gtttaaacct
      301 tgggtacaga aagcaccgag agccactggg gcatgcttgg agcttgtcat ggcttttggc
      361 gagactgtgg tccggctcat tatgcacctc ataaagaggg gaagtcgttg tcatcaaaat
      421 tagctgaagc tggaatttac attcatggaa atgtcgggtt cgccgctgtc ctacggggct
      481 gggtgagaaa ggaaaccttt gagcagctgc agggaggcta agtgaagttc agtaagtgct
      541 tagggctcca tttccaaacg caccctgcca ggtgcaggta gtattttaaa gagattgaag
      601 cagcagtggg gttcagcagt tcctggtgcg tgagatgggc atggcacagc gtgtacccac
      661 tcatccccag aggggttgct gttcttccaa agagactcct tgctagcagg caccctctct
      721 cttgtaaggt aagaaaagtg gcttttaatg ggattaaact ttcattatgg ttgggaaaga
      781 cctcttccaa ttatcaacca tccagtacag cc
//
LOCUS       KCLA01001590            1063 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25797upu ultra-conserved element locus uce-327,
            sequence.
ACCESSION   KCLA01001590
VERSION     KCLA01001590.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25797upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1063
                     /note="ultra-conserved element locus uce-327"
BASE COUNT          314 a          220 c          208 g          321 t
ORIGIN      
        1 cgaacaagga aaacacaaga aagcatcaca atgttgttcg tactcccgtt ctatattagc
       61 ttgaaaaaaa ttacagcagt gccattttca attcagtgtt atgctggaaa ggttgcaaat
      121 taattagaat tatgccttct ttgtgccaag tgataattta ctgcaattaa ttatcaaaag
      181 atctactgct gtcaattacg gtacttgctc tttgcagggg gagaagctat ttacgtatag
      241 ctaaattctg ttacaaagtt ccattctact tttattgttt tcaattaaac tatcatcatt
      301 tgctttccct ctgccaaaca caataaagac tcgttaagaa ctaatcatgc tactgtgacc
      361 tttgtttgta atccaaacac cagccagacc tgcactgagt caacgctgct attgttacac
      421 ctgcaaatgg tagggggaga ggagcgcact tcagaattaa tgagcacatc tgtggtctct
      481 cttacattca acacttgtaa aatagacctc tttaaagtgc cattatcaca atattgatag
      541 agttatttat agtactgcaa acgttccccg tcataacaga gtccttgtta tcccccacag
      601 cagttcacgt cgttgccatc tcctggactc attccacagt ctgcgataag gcaccaggtg
      661 gacaattctt tgcaaatcaa ctctaaaaga gatgagggaa acttctacat gagcaagttt
      721 tgtagctggg aataggtcaa actggcaaga cccaggctgt gtaagacttg ccacgttctt
      781 ctgccatttc ctgtgttttc tgggtgtgat gtaaaataaa atgacaggca gtacaagctg
      841 ggaatgatct ggatgctatt gtccaaatta gagccgcttt ttgcagttac taatactgtt
      901 ttaccataat tcagtaaaac agatgcgagt tcaatctctt ggtgtcagtc gctgaaaaca
      961 aatatcacag gtgccaactt tggttgctaa gggaatacga gcttcttggg cttcacagta
     1021 tgtgtgcaaa cagctaaaga ttgtccaagg cagaggttct gct
//
LOCUS       KCLA01001591             361 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25811upu ultra-conserved element locus uce-6570,
            sequence.
ACCESSION   KCLA01001591
VERSION     KCLA01001591.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 361)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 361)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..361
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25811upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>361
                     /note="ultra-conserved element locus uce-6570"
BASE COUNT          105 a           75 c           62 g          119 t
ORIGIN      
        1 cagtagtgtg aaatgtatct actccattta ctcttatccg ttgcacctac tttcattttc
       61 cctttaattt ttatatatgg taaaaatttc attgaagaga gattttagat gacaggactg
      121 taattttaaa cccaatagaa gaggtgtaag caatttgagc ttagctgaag cataatctta
      181 ggttgtcaag aagaaaccca ttctccctat gctaatcaat cagtatatca accgaccaat
      241 catctcctca gcttagcata tatcctaagg tttgatatat ctattaactg cccatcatgc
      301 agctggtctc cggttgatga gattccccct atcttggcat ttggaggcag acgactgagc
      361 t
//
LOCUS       KCLA01001592             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25826upu ultra-conserved element locus uce-2456,
            sequence.
ACCESSION   KCLA01001592
VERSION     KCLA01001592.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25826upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-2456"
BASE COUNT          281 a          183 c          195 g          216 t
ORIGIN      
        1 ggtgctttct tcctccccgc attactttaa gacacaaatt atgatgatac agagctgcct
       61 gtgcacgtga agagcagagc tcctgagcga tgcacccagg caataaaagc aggacagtcc
      121 ccgcagcgga ggatccccaa gcaggcattt atttcatctg aacgggtcgt aagtgggggc
      181 ttgggtggtt tatttttcgg agagcaccta acgattcgga gcacatctgc ccaaacgtct
      241 gtctcaaacc acacactgta tttattttga aaacacttgt acgagtttgc gttttccagc
      301 caccctctgg ataaaggttt gtaaaaataa agagcacttt cttccttcgg atgaagaatc
      361 cttgaataag cagaaagagg ccaagatgca ggtgatttat ttaagtctgt gtcaatgata
      421 atgatgtcat ggtttccagc acactgtgtc caccccattg tgggacgaaa gaatgtcaag
      481 gacaattcca aacacaaaac tttgattgtg ctggaaccgg aaaggcacag taagaactcc
      541 actgcgctct tcagttcaaa acctgcatcc tgcagacaaa ctacagaaag catgggagaa
      601 agagcaaagg agagggggct tatctcagag taaagctatg tgctgaggta ctagggtaga
      661 cagtcaggca ccagggataa aacaccaccg agtaaaacag cacccgaatt agaattattg
      721 tctatattgt gtgttttgaa caataaataa gaaaaatatt ttatcagaag aaaaatgtgt
      781 tatctaagag tcaggataaa caatgagcag ctttttaaga ccaatcgctt ttcattagac
      841 atcaaggcac cacatcagag cacttttaga acaat
//
LOCUS       KCLA01001593            1081 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25840upu ultra-conserved element locus uce-4308,
            sequence.
ACCESSION   KCLA01001593
VERSION     KCLA01001593.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25840upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1081
                     /note="ultra-conserved element locus uce-4308"
BASE COUNT          302 a          223 c          216 g          340 t
ORIGIN      
        1 cacatttgtt aagctgcttc tatcaatttt ttgaaaatag tacatgtatg catgttttgt
       61 caccaaagga atggtacacc tagctgtgga tctggtgtag acaatacctt ttataatgtt
      121 ctgatgctgc actattgaag gtttgtcatt aaaaaaaagt attgtatcaa gtgggaaagc
      181 agacgtatat tgcaattatt ttcctattag ctgctgccca ttgctcctga caggtataaa
      241 ttagatctcg ccaggttgcc tacagattaa tgagttccaa aattggcatt taattgtttg
      301 ggagtaagag gcagaaaagg aaggtatctg caaaaaatct atccacctgt gattagaaga
      361 tactctcctt tctttctgct tttcctttct cccttggcat tgctcgggtg ataactgaca
      421 cttctatcag aggattcctt tcgacacagc agaaacttgc agctgaggca aggccagaat
      481 taataatctg cgtgagcaaa cacacagctg ctgtttgtgg agagagattc tattaacgaa
      541 cagtgaattc tcataattag ctgagcggtt tctgcagctg cctgcctgac cccagactac
      601 acaaattgtg ggtggtgttc ggcctctaaa tcaatcttac ctaattacta taagcatgtt
      661 cctccagtcc taatgacggg ggaagtatgg gggggaatag acatttcctt acccattcaa
      721 atgttcctct tattagagtc tcctttgtgc ctaaattcat attttttcta ttagcatttg
      781 taagggtata caggtgtggt tacaaatcac aagcacagaa gtataattca tgtcctacaa
      841 ccatgtgcca gagtgtgtct gctttgcaaa cagtagcaaa atgtgtgctt gttggaagca
      901 tctgccttgc ttcaattcac aaaacataat ttaaagcaca catgtctgtc tggattcaaa
      961 gccttttctc tgccccactt cccctccccc acaaattaat gtgacaagaa ccggaaaatc
     1021 atgaatggtt ctgcgtttgt ctggtctgaa gcacagatac ttagtactgt ctcatcatgt
     1081 g
//
LOCUS       KCLA01001594             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25856upu ultra-conserved element locus uce-2014,
            sequence.
ACCESSION   KCLA01001594
VERSION     KCLA01001594.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25856upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-2014"
BASE COUNT          270 a          136 c          118 g          299 t
ORIGIN      
        1 aagggaggct caaagttggc cactatattt gaattacaaa gtagcaatca attagtttat
       61 cattaatcag ataattttgg ggatcgtgaa taatatgaaa tgaaaagaag aaataactag
      121 caggataatt ttcaggaatc atctctcagc tttataaact aatcctcctc taatggccct
      181 ttttaatgta atttataggt tcatcattac cctttttgta ttagtaatta tttctaaaat
      241 accaaagaac catctttttt tcaaggtcct tctatgttcc tgatttacag ctaagctcgt
      301 gttggactct gtctttctga ggtttgacat ttcaaaatat ttatagctct tttacattaa
      361 tgcctttctc atgaatctga aggtgaccgt tatttctttc atcttgttgt aattaaatgg
      421 atcaactatg gctttattat gtctactatt tatctgtgca gtgtgttaaa acattcagat
      481 tagcaagtga tattgagcat tatgtgaatt ataacaaaca aatatttcct aaaacatagg
      541 ttacacttga tgcattggct aagaaactgt tccaagtgaa agcacaaaat ctttaatatt
      601 ttattgatca gatcgaaacc ttctgcccaa agtggcaatt aaatttcaat taaactgact
      661 gaaagcatca tattaaattt cagcacttta cgagctatca gataatgctg caggacaaat
      721 ctttagtatg atcacactct tttcaaatta tattatcctg ttcattcaca ataaaagtga
      781 cagttttagg tatactttca atatttcttg aatataaacc ctc
//
LOCUS       KCLA01001595             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25872upu ultra-conserved element locus uce-7957,
            sequence.
ACCESSION   KCLA01001595
VERSION     KCLA01001595.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25872upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-7957"
BASE COUNT          230 a          140 c          126 g          218 t
ORIGIN      
        1 tttcttctag gagacttcgt tctgaaaggc aaaaagcact gcgttgcccc tgctgaaatc
       61 tcttaaaata aaaagaatga actgcagctt acctgtactg gaatgtcata tttgtaattt
      121 ttatctttat ttcctctccg tggcgaattt ctccagtcat ttcaaagagt ttgttagcca
      181 ttttctcata aactttggca ttccttttag tttgtttcag ctcatcaaaa aattcttccc
      241 aaaccagcat taaacctctc atctctgcat cagtccagtt tctggccctc ctgtgtttct
      301 cagtctgaga agagacaatg taactgggaa tttctgctgc agccattgct gactgaccta
      361 aaagggtttt aaaagaggac acttaatata gatggagttt ttagcttagg ttttttgtag
      421 tgcaagacat gcatacgtgg ataaagaatt tgaatgacaa cagaacatat gaaacctttt
      481 tgcaacagct tgaagcttga gtgcacaaaa tggggcctac atctgacagg caggaattta
      541 gttaaaagct tttaaacaga gaaacgtcat tttgatgtca cgtttccata gcaacagagc
      601 aactgcataa gctacaacaa caaaaacctt ttaactgaaa gccaaagaat caggacaaag
      661 ttgacaggcc atcaatatta aagcttttaa acactttagg tttaacaaaa aaaa
//
LOCUS       KCLA01001596             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25886upu ultra-conserved element locus uce-7877,
            sequence.
ACCESSION   KCLA01001596
VERSION     KCLA01001596.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25886upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-7877"
BASE COUNT          263 a          145 c          155 g          270 t
ORIGIN      
        1 aaaaagggaa attccaatga actcaataca gttactctat tttacataat taaaatgaga
       61 acagaatctg gcctagtgtt tatttcattt tatcacattg ggtaatgctg tcctggtggc
      121 attaaataca gctgatctct cccctcccct tctgtgcaca catgtttttg ttaaaattta
      181 actgtttaca gctatgtctc ttagtattgc ctacaaatca gtcaaagaag agtaggtcat
      241 ctctcctgcc ctactgttta tatattaatc atctggcaaa taaactgctc agtatcctac
      301 ccacctcagt aatatttgtg atgtaatttg tttggatgcc caaatgtcac cagcgttgat
      361 tgtaagagat gaaaaaaatg tacttgctca gcacaccaag ctctgggcta aaatgtaagc
      421 atgaaatctc tggtttattt ttgtaataat gtttacagct gtttaatgac cctgaaaggg
      481 ttcagtagtc tggtgttctg tatttcttaa caggagtgta taatgcttat aacagcccta
      541 gttaaactgt tcgagctaaa acaataagaa cgatatttaa taaaaattca atatatgttc
      601 tgtagtttct gagcaatacc tgtttatgag ttgctaagaa ctggagcagt cagaatgttt
      661 agaatttgtc aaaggaacac aagataatgt agatatatgt gatttttcaa gctggaaaga
      721 taaataccag gtctgtattc tgaaagcata cgtaacagcg tgtgtaacta actgctcaga
      781 ggatcagggc cagagcaagc ttgtcattta agcacgtgag cttgtaaagc att
//
LOCUS       KCLA01001597             907 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25902upu ultra-conserved element locus uce-7623,
            sequence.
ACCESSION   KCLA01001597
VERSION     KCLA01001597.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25902upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>907
                     /note="ultra-conserved element locus uce-7623"
BASE COUNT          305 a          196 c          188 g          218 t
ORIGIN      
        1 cctgttattc gcctttttgt cttccctccc ccaagccaaa cactctacat gctcattcct
       61 cctgccatca cgcaaagcat ccctcagatg atggcattcc cgttccttag cttgggagag
      121 tcggtgcgtg tgcgggccac aatttgtgtg atttccaggt gaaacccgtg ttgtgactca
      181 cacgtgtgcg tttctgctta ttggctttct caggcagcag cgggggacca cactgctttt
      241 ccgtagttgt aagcacatgg ctcgtggcaa cccggctatc acacaaggta cgagcgaggt
      301 tataacgtgt ccacttagga ctcaggggac gcagggtgct cagaatgaat tgctgtacat
      361 ataaaatata gcgaagcaga aagcaatgtg agggaattag gccacagcac aaaaacacct
      421 aatattgatt ttagctacaa accgtagttt gattatggcc cataaggtag aagcaagact
      481 ccccgagctt gtcatttctc atacatgcag cgatattagg aggtatcatc gctgaggaag
      541 gaagagccca gcaccaagaa aagtaagaga aagagaaaga gaaaagtaga aaatttagat
      601 tccctataat aaagatgaaa gaaagaaaaa tcttcatatt ttatcttaga ataaagaaag
      661 tttatttttc cagtcagatt gtctaggctt cacccaaata taaggctgca aagacagcag
      721 ttgttattat cgtgacatag agacatctaa gaggtgtttc aataacccag acaacgaaag
      781 cattcattct aaaagacagc tggaacagcg acacagaatg tcatagaaaa aacattaaca
      841 atcaaacaac aacaaaaaat aaagtccacc agagaccaca acattaaaaa taagtacaaa
      901 actcatt
//
LOCUS       KCLA01001598             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25918upu ultra-conserved element locus uce-1965,
            sequence.
ACCESSION   KCLA01001598
VERSION     KCLA01001598.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25918upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-1965"
BASE COUNT          206 a          208 c          149 g          209 t
ORIGIN      
        1 cggcggctgc ctgcgcctgc cgctccgcac tcggctcctc attaactggg cggcgatcca
       61 agttcatctg ggccccagag aaaggcaatg cttgtgttta gaccgcacaa tactgacata
      121 acattaacag atttacatat gcaaaactgt gaagcaacag gcattccccc tcaattgacc
      181 cacagcttgt agtggctgcc gagttattcc ctgcttaggc tctgtaacta agtgggcgtc
      241 atgcgactac catctgggta ccacttattt aaagctggca gtctctctgt aataggcaag
      301 ctggcaataa gcaggaaggg aataaattgc atcatttagt taacatccac ttgctttgcg
      361 gctgttaaaa acccatgact gaataataat ttggttattt cttttgccag acaatgctgt
      421 cagccaaatc ggactacgca tgctgcaaaa cgtcagcttg caaaatttcc acttttaaaa
      481 ataaaagaaa ttcgcagtat aacgcgagag aagactttct tctaatgctg gcgactcaga
      541 tgcgatcgag ttctaaaaat aaacttgcac gactgtagtc gccagatcct gcttcccccc
      601 acccctgtta aatttgccaa acaccactga cctggcctct aaggaaccgg gttccacttg
      661 tagaatcact cattagatcc aaacacatct ccacttcacg ctccgcgctg cccttctctt
      721 cctttacctt aatttgtagg ttttatcatt tccttctgac acaactgctc gc
//
LOCUS       KCLA01001599             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25949upu ultra-conserved element locus uce-6831,
            sequence.
ACCESSION   KCLA01001599
VERSION     KCLA01001599.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25949upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-6831"
BASE COUNT          181 a          176 c          152 g          174 t
ORIGIN      
        1 ggagcgaggg tcttgctttc attcaagtca tctgggggag actcgtggtg agaggctgca
       61 gaacaaactt gtatgaggag aggggaacgg gcaggcgttc atctgatggt caccactacc
      121 tccctcacac agtttcctgg catctctctg cagccgttca aatgattcag agtcacagca
      181 gaaccctttg ctcctgaaga ggcacttcta ggtttaacaa ggggtaaaaa gcagccccaa
      241 gaatgctcgt ggccacacct cagatcctgg ggaaacccag ctccatccct cacctctgac
      301 acgggaggga ggggatagct tgggataccc ctccttctcg ctgtgccgag tgccaacacc
      361 gtatgggctg cgctcctccg cgctctccct gcctttgcta gtattacaga taatttgcta
      421 gtttcagagt gtacttatta caggactgtc agaggagttt ttgtttcaac aacacgttaa
      481 ctttactgca cttataaaaa acattatgtg tcccctgtga ttccctgtgt ttaagagcag
      541 cgaaatgtta ttgatcccag tgtgacaaat caagagttag gtaatgtcta caaaactcaa
      601 ttttctgcaa gacataaaac cctttttatg aaacccttcc ttaagaaatt caggagcaac
      661 acacacacac acactcacac act
//
LOCUS       KCLA01001600            1070 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25965upu ultra-conserved element locus uce-6019,
            sequence.
ACCESSION   KCLA01001600
VERSION     KCLA01001600.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25965upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1070
                     /note="ultra-conserved element locus uce-6019"
BASE COUNT          298 a          228 c          310 g          234 t
ORIGIN      
        1 gctccagtct agaggctgca cgagaaggga agcagacagt gcagggtaca ctgccccgca
       61 tcccaaggct gcgggaggca gcaagcaggg accatatgga aggtgctggc aaatgaggcc
      121 attgaagtga aggctgcaaa tgagtttagt agacagccag atatttcgaa gaggggggag
      181 acacagaggg gaatgaagaa gagcaggagt aagggagagc cccacgctga atgaagcccg
      241 ctggagtgca caggcacagt ggacagcgct ccctttctct ccaccctaca ctttctccca
      301 gtgccctaac tttaaaatgc cccgaagaga agaagggacc aaggtgtcat ggccccttct
      361 ttgtttttaa ttacttccca tgttaatctt gatttgcacg tcgatctctc agaactgggc
      421 cagggactct acaaagccct cgtcagcaac tcccccaata ataaacagga aaaggcttaa
      481 ggagcaaatc acttgcatgt taatgagact gtttgctgga gtcaagagag aaaacagcaa
      541 acaaacaaat ggactgaatt ccggtggcag ctgtttgcct cttaatctca gctcgtcaga
      601 gctgcccttt gatgggactc tatctacaca aacgattgtg ctaaatcttc taatctacgt
      661 cctcattatt acatcccttc ttacgcatgt aaatcaggga caaactaatt ttaatatgta
      721 gatagattat ggaagggaag gggaggggat tggaggggaa aggagctgct gctggtgtct
      781 gtgtctgctg ccctaagggg tgttaatgag gagtgcaggg agggagctgt ctgcacagac
      841 ctccagcata ccagggggtt gaggaagagt aggacctgtt ttcagggtaa agtgggggtt
      901 ataaaggggc atgaagatgg gtgctgagat ggtagagaag agaagggcat ggggcagcac
      961 tggcaaagcg atcagaggaa ctcagcctag cattccccca aatcccatgc actcagaccc
     1021 cagctttgtt gaagtgggct ttgttgatgt agaggagggc ttgatgatgg
//
LOCUS       KCLA01001601             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 25994upu ultra-conserved element locus uce-4102,
            sequence.
ACCESSION   KCLA01001601
VERSION     KCLA01001601.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="25994upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-4102"
BASE COUNT          175 a          102 c          131 g          220 t
ORIGIN      
        1 ctttctcctc tctaatcaaa aggggttctg agttcttcct tgatggctag aacagtaaca
       61 aacgatgctc ctgtatctgt aacataagta ctgctgtctg tcagtaatga actttgcaac
      121 tttgttttcc aaagtacatt ttatttcgat ctgtccagtc tattgcacta attcttttag
      181 ttattttcat tatatgaaat ctatcaagtg tgtcagagaa gatgaattag tctatttaaa
      241 tattgaactg atagcagaag cttacttgtg cagattctac atttgcagta atctgggttt
      301 agcaaggaaa acgacagttc accagtgttt agttttatat tgaggtgctc aggtttgaat
      361 aaagtggttt aaaaaaattt tgcttgctgc tgtttactga gactttcaga aggctttatt
      421 gtgtttgcac tgttccaggc gaggtgtttg atttcctaca cgggtcagct cttcagatgg
      481 ttatcagtag acatggagaa atacaagctt ggactatagg acagtggtgc tgtagttatc
      541 ctatgagaga tgtttaaatg cagaggtaag agggtatctt atcacatccg ttcagaagtg
      601 caatcaaaac agtgatattc tctcttga
//
LOCUS       KCLA01001602             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26010upu ultra-conserved element locus uce-149,
            sequence.
ACCESSION   KCLA01001602
VERSION     KCLA01001602.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26010upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-149"
BASE COUNT          248 a          134 c          145 g          223 t
ORIGIN      
        1 aaccaaatta ttttgttact attggtattg agaactaatg caaagtgttt gattaagttt
       61 ttaaatcaat attataatca tttagggcgt aatcaggcat gcttaacagt ccatttaact
      121 cacctggtat ctcacacaac caccacaata tgcaagaaac aactgctggg aattgtttca
      181 gatgctctaa agtatgttaa ttccaaagca aaatgacttg tgccgtgaat tttaacacac
      241 ttgaaagcct gtactttctc tcgttctgga gcacaaattt tgcatgtctg aagagctgtg
      301 attcatctta agaaaaccca tcttgtgtta aatggaatgg aaactggact aagtggtcaa
      361 atgacaagta cattcatatt caagctgtat tataaatgca tgtacagtaa tttacgtctc
      421 tcagctacca caaaaggctc ttgataagca ggtaatttgc taaatggact cctttatcca
      481 agtattcgaa gggcgttaca agaaaaatct gcagaggcat taatgtgacg taaaggtcaa
      541 gcattgtgac atacctttca aataatcccg cctaacttgc gatatgatga ggaggctgct
      601 ggcagcactg ttcagtgtga agcccttgat gtgggtctca gcgctaaaag aagcagacat
      661 ttagaaagga attactgaca tgcttctgat acgataataa atggttgagc accaaggtga
      721 aattataaaa actactgttc gtatgttaaa
//
LOCUS       KCLA01001603             651 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26026upu ultra-conserved element locus uce-4223,
            sequence.
ACCESSION   KCLA01001603
VERSION     KCLA01001603.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 651)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..651
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26026upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>651
                     /note="ultra-conserved element locus uce-4223"
BASE COUNT          246 a          114 c          114 g          177 t
ORIGIN      
        1 aaaagataat taacacttaa ggactagtgc tataagccat gaagctttta ttcaagttaa
       61 aactaatgta ttgcaaactt gtggaaaaaa tattaaaaaa aatcctgtcc tttatcaaaa
      121 ccattaaaat aatcttacaa gagtccccaa gtttaaaaag aggcacagac tatatttaac
      181 acagtaatat aaatacagaa aaccttaaac atttgaaact ggaggctgaa gtgtgtaaag
      241 tgcttactta gatgatatga ataggatact ggcaaacaaa agcagcagtg tgctcctaga
      301 atgctgtgct tcaaggagtt tccttggcaa cagaaatgca gttccaaaag tagacagaac
      361 tttcctcaga aaacatacta ttaataacaa ccttccggaa caacttggaa caatttgact
      421 acttggcaat aataatgcca agtgttctgc aaattaatct aacacataac acttatatgt
      481 ttctcttgcc cataattctc ctgaagggga ggaatgagct ctctgctgct agaggataca
      541 aatgggcaaa gcagttccaa atgctgtgca aacagagaga gagctcgaat agctgcagcc
      601 tataaggatc aattaatgtg ctttgtatca ttttaacttg taaaacagat t
//
LOCUS       KCLA01001604             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26042upu ultra-conserved element locus uce-3138,
            sequence.
ACCESSION   KCLA01001604
VERSION     KCLA01001604.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26042upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-3138"
BASE COUNT          233 a          177 c          143 g          257 t
ORIGIN      
        1 aaatgagaat ccaaacagag gtcggggtgt ccgtgttgaa atataacgac tcctgctaga
       61 actggacgac acgagtgagg gtttccagtc aaaggcattg actgtcccgt tacgaccaga
      121 taaatcactc ttatcctccc catcttccaa agtaatctgt tgtggtttac ataaaacgga
      181 gctcagcgtt acgtctcgcc gttaccgtat ctccaatgtc agacttatat taatcagctt
      241 attagacatg gcttagagag tactccaaat ttattcacta ttttccttga ctttatgtgg
      301 aagacttggt ccaatccata ttacgtctta ccttttagct gttagcgttg atagcatctc
      361 tttttattag actcttgatg cccgctgatg ttttatgcat aatgatgctc aagtttaatt
      421 gagctgtaag cttcggttta attatgagcc ttcatgatac cttcagcact ttttcttctc
      481 tgattactgt aactggttct cgctaaccct tttaaaatcc ttaacctatt aaagcactgg
      541 tagacaagtc atttttagga gaaagtctaa ttagatgatt gcaattatct taatgcatcc
      601 ttagtattta ggaaaaaaac accaacctaa gccaagtgca ctttgtggag cattccaagc
      661 attcaatccg tttctctcta cacgtgaatt ctcctagaca tgaattaaca gggagaaaca
      721 gaaccggcac ccaaagaaat catctctttg gggacatttc tcttcattaa atatcacaga
      781 atcacaagat aatcctggta aggagctccc
//
LOCUS       KCLA01001605             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26058upu ultra-conserved element locus uce-7859,
            sequence.
ACCESSION   KCLA01001605
VERSION     KCLA01001605.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26058upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-7859"
BASE COUNT          223 a          117 c          113 g          214 t
ORIGIN      
        1 acaatagtgt agtttctttg tgggcatgga agttaatttt aatgccattt tttgtacctg
       61 agatactgca aattagtgtc ttcaacttat attgcccatc ataaactttt ttaacctgtg
      121 agtcattttc aaaataataa acgtaactat tccataaaaa tatctcaaca cagaagagcc
      181 agaaaagtga aggacatgaa cagatggcac atcaatcttc tgcatttata caatttgttt
      241 tttaatgcaa atagtgtggg ttgcctgctc ttgccttgga tattgttcca aagaagagca
      301 cattttctta tctttctgga tcaatgtgac atttgcagtt atcataaagt gggagcccat
      361 ttaatgatgt taatgcttcc ttaatgtaaa aataaaatca cctcctttat aaaagcaaac
      421 agattaaaag tcccaaagag accattgaaa tctgtgacat ttgcagttac tggtagctag
      481 atggcttgat tatacacagg taaaaaatat cttaaaagca ttgtttacgc tcattaatca
      541 gaacattaaa taggaaggct ggagtctcct cagctagaat cactggtaaa aacgctttaa
      601 taatggaggc attgtttcat tcagcctgtt tagacggttc cccaaactgc aaacaaccaa
      661 acttatg
//
LOCUS       KCLA01001606             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26088upu ultra-conserved element locus uce-8026,
            sequence.
ACCESSION   KCLA01001606
VERSION     KCLA01001606.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26088upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-8026"
BASE COUNT          120 a           49 c           73 g          134 t
ORIGIN      
        1 atgctctaaa tgcttataat tttttttcta ctagtcacat ttagctaggc agaaatttaa
       61 aaattctgct ggcatgtttg ttggaaataa aaaagcctgt aggtcaagtc tttctgagag
      121 aatgccaaat gtctttgtgt ccagttattt atggtttcag ataattgtac agaaaatatc
      181 aaatttgcat agtgtgatta ttgctgatta tttatctagc agtcaaaatg tttcagtggt
      241 tcctaggatg acagattgac aagtacttaa aactcattca ttttatgaaa tttgcatgta
      301 attaggcaat aatgaagggg atgtttgtgg acagcggatt atactacaat atgctggaag
      361 caattcaaat gcttga
//
LOCUS       KCLA01001607             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26103upu ultra-conserved element locus uce-4732,
            sequence.
ACCESSION   KCLA01001607
VERSION     KCLA01001607.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26103upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-4732"
BASE COUNT          268 a          186 c          157 g          234 t
ORIGIN      
        1 caaatcatct ataaaaccag tgtttaatgg ccagccgatg aataatcaat gtctcacttt
       61 tcatctgagt gtgaaagtga gaataatcta atacactgtc cccctggtac aacatgaggc
      121 cttgggttcc gtttctattc agggctgatt tataacccaa tggaaacctg atgtaaacat
      181 atgatcaatg agtcccatca ttgctgataa taacccccaa ccggcccact ccctcatctc
      241 aaaagccatc ccttcaggct attagtttcg tccagctaat cctctctact atttctgcct
      301 gctgctttta ccttggccat ccgttcagtc cggcagactc agaagtaatt ttatacgcag
      361 cagagagcgg gtggaattga tttttcactc agtgctcagt tcccatctga ataattatca
      421 attttactgc ctcataaagg gaagagtcaa aatttcaaat caattcaaaa gagcttctga
      481 gactacagaa actgtgcaag agaataaagg tcaaagttgt cagtgacctc gggagatgat
      541 gtcaggtatt agtacaccga gtagttgaca tcagaggcac tcaatatgat atgactagtg
      601 ctaatgcaaa tcatatttat gctgactact ggagaccatc cattaatatt taaaagagta
      661 tgtgaaagcc tgcattcaaa ataaatataa catattctgc agaatctgaa gttaatgaag
      721 acggatcacc acccagttat gtgctgtgaa gtgaaagatt actgtgtatt aacagacaaa
      781 gtattacatc aagattgcca cagacgcagg agggtcaaga gcccttctta catccaaacc
      841 acctc
//
LOCUS       KCLA01001608             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26119upu ultra-conserved element locus uce-819,
            sequence.
ACCESSION   KCLA01001608
VERSION     KCLA01001608.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26119upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-819"
BASE COUNT          177 a          114 c          112 g          178 t
ORIGIN      
        1 ttttttattt ttatcaaacc tctccaaagg gactcatcat atgcgggact ctatgaagag
       61 aaaaagaaga gcattgtcct tatcacctcc ttccagaaag tggcagagta ataggacttt
      121 gtaaggcgaa atgaagccca gtctgatggc tgctgattaa aaattgactc tgccacatca
      181 aagaagagtt gaaggtgaaa atgatgatca cttccctctc ccagggaccc tgcaccattt
      241 cttttattca accttgaaag gttctttctg aataagataa tatccctcga gtccattctg
      301 gctaggcggc atgggaaaat gtagatcagt atgcctattc tttatgaaaa aatgggattt
      361 tgttaatgac atagcactgt aaagtgatgg gttgtatgtg gtaaatgatg agaaattaat
      421 tataaaatgc ctcttagaca acagatcaaa ttaattgcta gtatacatct actaaaaaga
      481 gctctgcaaa cccaaactgc atttcctgcc tcattgctgg ggatttctgt acttgaatca
      541 aaccgtagct tgcaccgtct tttctgcttc tgcatctttt a
//
LOCUS       KCLA01001609             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26135upu ultra-conserved element locus uce-4,
            sequence.
ACCESSION   KCLA01001609
VERSION     KCLA01001609.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26135upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-4"
BASE COUNT          229 a          111 c          118 g          199 t
ORIGIN      
        1 ttattttaac aattacctca aatttagaag gctattccac cttcatcaga gaatagtcac
       61 ccacccttca taaagagagt atctgttaca agatttggaa gtgactagta ggagtgaaag
      121 ctaagtttca tttcttagag attctttaga atggaacaaa ctatatctaa aaagtgcaga
      181 tatgcttttt atttcttttg cagttcaggg gaggggggag ggaaaagcat ctctgatttg
      241 tatattaaag cacaagcatc tgtcctactg atgatattct agggaagcac attagcataa
      301 aatttaacga tgtcaaataa gtggatgtga aatagggact gcgtaaagac actatttcca
      361 agcctgacag aaacatcact gtttagaaat gcaaatgaaa ccattatgtt caataattat
      421 atgaaaatat gaacagttca gcatgttttc cagccctgat ggcggttaat gggatgtacg
      481 cttatgtaaa taactactat taaagctaat gctgaaaaaa actaataaat tcatactaaa
      541 gcaactgatt tagtacgctt ttaaacccca gcagtgctca cttattagaa aggagtgcat
      601 tcttatgttt agaactcatt actgttacaa gtcactgcaa ctccatcaat taccatg
//
LOCUS       KCLA01001610             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26149upu ultra-conserved element locus uce-3910,
            sequence.
ACCESSION   KCLA01001610
VERSION     KCLA01001610.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26149upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-3910"
BASE COUNT          258 a          171 c          183 g          248 t
ORIGIN      
        1 tgtaacaggc tctggtcttc cagcaggaat ccctggacgc aactgggaga gcgtgagaca
       61 gcagaggaat gtactgtata ttcaaatagc tgtacagtgg aaaccgtatg ctccaacagc
      121 cgccgcactg ctgtactgca gtccaaattc caagtactca gggatgttaa gacgtgaaac
      181 aatgcctcta tttgtgcaga gcattcttat gaggggcatc tgtgtgcttt taatcagttt
      241 cacgctgagt gaaagaaaat cgtaaactac acattaaaag aagatttagt gaaagttatt
      301 tttcctctat ctgctgcatc ctaattcaat gctttccctt gctttcagtg ataatacaag
      361 taatctgcta gcaacattca tgaggaaagt ttgatgtgga tttacaccag tggagctaca
      421 ttacaatggg tagatttaag gtattagaaa acgaggtttt ggatttgtta cagaggtatg
      481 aaacccctaa gacacaggca gatagtactt ccagcgtaca gcaaccactc ttattataaa
      541 acaaaccagt gttaagtcaa agtacctgat tacaattcgc tagtgctatg cagctctgat
      601 agcaggctta tatttaatgc cacagaaaca atatcattta ttttgctgcc ttcccttatc
      661 ccttcattat tgggtctgca gtctgtgaaa ccttaagcaa aagcacaaga tatgaattat
      721 aggaaacatc aaagtgtagt gcaatcaaat ggcattccct gtgatccttg cagagatagc
      781 gaactcattt cttatgtgca gtttggccga actgctatcc ctgcagagct gcagtggttg
      841 taattagaga tctttgggag
//
LOCUS       KCLA01001611             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26165upu ultra-conserved element locus uce-7840,
            sequence.
ACCESSION   KCLA01001611
VERSION     KCLA01001611.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-7840"
BASE COUNT          293 a          190 c          205 g          305 t
ORIGIN      
        1 gaagagggca tcttgtgacc ttgtgttgtt cacagactct tccttttctg aattcttagt
       61 gcagaggagg gggaaaatct tgcagaggca ctcagttcaa gtagaaaaag gaaggattag
      121 tgccaggggc cacggagcca cagagatcag ttgcctctgc cggatcgatg gagctaagaa
      181 caggccagct cagcacacct ttccttacac gcaccggtct tttatttcac gctcctctct
      241 atctagatgt atgttccaga aagaaggaaa aagtagttga ggtttaaact cttatcacta
      301 aagtgagtct ccctctacat taaaaaacta tccagacatt gtaacgggaa tgggttcagt
      361 tcttatgtca taaatttgtg tgtgtagaaa aaagacttat tggtgaattt agcagtattt
      421 ttcgttgaac tggcagttgc taaccattac accagtattt atttgattct taaagagcac
      481 aaaagcatgg actacaaata aagaagatgg agtaatagct tttgactgga ccactagctt
      541 taaacttgaa atgaagtgtc cagttttgag ttactgtgtc caaatgccat ttgtacagtt
      601 tgaaaagtgg gggcattttt ccagcttgtc actgctagct gtagttcatt ccagtgaatg
      661 atatcactga aggagcagtt gttctgctat aagtacttca ctcatgactg gaatgtatta
      721 aatgtattaa tctgtgcctc agagtgtaat ttagggaagc cctacatttg acacattctt
      781 gtacatcctt tttttattgc cttatcctgc aggtaaccat gtctcaacag caaagagacg
      841 ggatgaagtt aaaattacat gtcaccagat attacattct tttcccgctg ctcattttgc
      901 tgtcagaatt acaaattttc aacaacatta gtttaaatat gtttatgact tgatttacgc
      961 ccccgacgcc aaaataaaat gccaggcagg aat
//
LOCUS       KCLA01001612             764 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26180upu ultra-conserved element locus uce-1253,
            sequence.
ACCESSION   KCLA01001612
VERSION     KCLA01001612.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 764)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..764
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26180upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>764
                     /note="ultra-conserved element locus uce-1253"
BASE COUNT          203 a          146 c          145 g          270 t
ORIGIN      
        1 ctattttgat tcatataaac cctcagatgg gatgggcatt gagtatcatt gtttttaaac
       61 ttaccagtca tcatgtaaag tcctatcatt ctaaatattt tatgaggatc taaggtttcc
      121 ccagggcacc tttgataaca aactttctgc agaaaattta ggaagtatta tgtttcaagg
      181 aggagctggc tgcttgaagt taattctctt gttgagtcat ttattccctt aataggaatt
      241 ttctgatctg ctgtcattct tgttcacaca ctgggtgtca ctgcctctaa aacacttgtc
      301 attctttaat ggaaacaaaa tagtcattgc agtcagagcc gcaatgtcat tccactaccc
      361 cttgctgcgt cggcaatagt gaaaatgaca gagcagctct cagtaggggt aattaaaatg
      421 taaatattga tattttatta tttgaaatta ctttccagtg cggcatttaa tatctctcca
      481 tctgtgcggc tctgtttagc ggtcacttta gtgcagctct gggatgccaa gcggcggctt
      541 gatccccgtt atgtcaaaat gcttgttgct gcttaatttt gatatctaat taagtggaaa
      601 agtacagtcc acactgtaat ccatggcatc ttaaccagct gcttgggtat atttagaatt
      661 aatctccact atggaatcat cctaatgtat gcaattaaga gtctgccgat ggctaattag
      721 gtgtattaga atcaggcagc ttcttttttt ttcctttctt tttt
//
LOCUS       KCLA01001613             362 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26210upu ultra-conserved element locus uce-7190,
            sequence.
ACCESSION   KCLA01001613
VERSION     KCLA01001613.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 362)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..362
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26210upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>362
                     /note="ultra-conserved element locus uce-7190"
BASE COUNT          132 a           58 c           83 g           89 t
ORIGIN      
        1 ttgcagcaaa cagtggatga tattggcgtt caatagctat ctcatcaaaa ggtaccaaat
       61 gcacgagacc ttttgcgctt ttcaatttga aagaaaatga tttcattaga aaaaaaagaa
      121 ccatcactct ggatgttgga gaatgccaga gcctgatgaa accagctgaa gagacaaact
      181 gagtgtacgg atgcagatta gccttcagaa gatgagggtg taaaagggat ttaatggtag
      241 gatggattat agaaatcctt gtaacaatgt taaataatta tagttccagc cgagatcaaa
      301 gcagtgctga ttgaaccccc tcaagctgtt aacacggagt atcttgaaga aaaaaaaagg
      361 ga
//
LOCUS       KCLA01001614             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26226upu ultra-conserved element locus uce-4747,
            sequence.
ACCESSION   KCLA01001614
VERSION     KCLA01001614.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26226upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-4747"
BASE COUNT          190 a          235 c          232 g          216 t
ORIGIN      
        1 ccaaaacaac ccctcccaca cacacacccc cccctcccaa cctacgtgat cgggccggaa
       61 gcaagggcac ggcaacttct ttgcccccta cttaacgtca gctgagagcg aggggcagcc
      121 tcagtctgag cgcgttacag ccgccccatc aaggtgagtt cctagctacg ttatggcagg
      181 ttatcgaccg gtgggtactg ggtggcccca gccgcgggaa ctcagagcct gtgtcgtgac
      241 tcatggctgt atcctccagg ggatcctcgg gtcctgtggg gtttgtaagc gtcctggtat
      301 gagtcagagt attcttcttc cactagagga tagtgatctc ggctgtgttg ggaactggaa
      361 gacaagcggt tcctgctctt ccgagccctt tcattgtgat aattttcatc tgaggtcatt
      421 agacttcgtc gctcgatggg agagttctct gccgagtggc tgccgtgcct cccgcgctgg
      481 ctctgcgagt gccaaagaac gcaagagtta atgcacgccc cgagcacgcc gccgccctca
      541 gctcgttctc agccttactc tgaggccttt cagagtccat ccacttttga gtgactcagt
      601 ttacattacg ctagcggaag gggttagagg aatagcctgg ttcctcgagc tgaaagcaga
      661 ccaaaggcag aattacagcg ggaattcact tgggtaactg ctacaggcca gttagcatga
      721 aaagtgagct gatgtattca gcatttatca cttttctctg atcaggaatg gaacagtcac
      781 gcttctcctc cgcttagaaa actctgagcg ttggtttaga aaacatcgga agatgttttg
      841 tggctttggt ttatacaggg agctctactt aga
//
LOCUS       KCLA01001615             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26242upu ultra-conserved element locus uce-7611,
            sequence.
ACCESSION   KCLA01001615
VERSION     KCLA01001615.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26242upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-7611"
BASE COUNT          289 a          187 c          173 g          278 t
ORIGIN      
        1 taataggcac aaaaccgaca ggatcttcct ctaacatctt caggaaacag ggaattgctt
       61 agaaagtgga aaaactaaaa atgggaaaga agccgtcctg gggttatctt cttggcaact
      121 gtatttacct cctcccatct aacaagaagt tgttccccac cacacaacca ccagtgtgct
      181 ttctcacagt tggacaatat tttgatatag gtcaaacatt gtcagtctga ataggtttga
      241 gttcaggagt tcaaacagat gaggtagctt tggagagcgt attttggctc atgaaaccct
      301 aaaacaccgg caacatttgg agctccgtag ctgactgaag gaaaaggtaa gagctgtctg
      361 ctatttaagg caacattcag tggctgccat gctaaataat gtgtttaaag cacaatctcc
      421 atcagcagca agcattatgt agctaatttc ttacatcatt gttcttttca ttaattaaca
      481 tttctcaacc gttagtgcaa tgattgcggt gcctctgtgc tgtatgtctc ttttcgtgat
      541 taataaggag tcattatatt tccctttcct gaagcagtca attaacacgg aatactttcc
      601 attaattact gaatgtttaa aaccagcatg ctgtacctgg agagcaatct gctctaggaa
      661 cctgtgacac caattgcttt aaaaagttct ctttaaattt tattccaaaa acacaagcaa
      721 tttagctagc tatattaatt tgcctccgaa gcagggctgt gaatgagaaa catcttttaa
      781 tctcatgcaa gaaaaggcag ccatctggct gctgaggatt tcagagtcag actctccctg
      841 tctctctctg taaatgcagg tcattaaagt aatgtgttca tctacataaa actcaaatgg
      901 aatataaaag gtaatattta tatacaa
//
LOCUS       KCLA01001616             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26256upu ultra-conserved element locus uce-6200,
            sequence.
ACCESSION   KCLA01001616
VERSION     KCLA01001616.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26256upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-6200"
BASE COUNT          186 a          147 c          140 g          248 t
ORIGIN      
        1 ccagttaaat gtgcttatgt atgtacttcc atctcccacc gtcacaacct gtggagccca
       61 tgcctggcag atacccactg ttgtttaact ctgtctttta cccacacact tctgaatgat
      121 gaattttatc aatccttaaa tctttgtttg ttttagggat gattttgttt tttttttcct
      181 cttggcatcc catctctgcc ctagcaagtg cgaacagttt gagctgcatt taaggaaata
      241 ttgttgtaag gcttttatgt gctgtacttc aatcagctag tgccagcagt atcccaatag
      301 aaagaccctc aacagaccat tttcagcatt ttactgcaat taaactcctc tggttttagc
      361 cctcaggcaa tttagtacct ttttacatat gcacattatg aacttttgac cagggcctgg
      421 tagtcatata ttagatagca gcttttgaaa gcagccttaa caagttcctc agagtattac
      481 agtcggagtt ggttgtggaa aaggtaattt aaccaacttg cagtgaggcc attcagaatc
      541 ttactgatga tcctaaatat gtcttttttt ccttgtttcc tctggaagct ggtagcaaga
      601 gctctcaaag aatgtgattg atcttttatt cagtagctaa cgagggctgt gattctatta
      661 gtgctctaca aggcaaggga acagtgattt aatgaagtgt ctagtgagct ggtcatagat
      721 t
//
LOCUS       KCLA01001617            1182 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26272upu ultra-conserved element locus uce-3154,
            sequence.
ACCESSION   KCLA01001617
VERSION     KCLA01001617.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1182
                     /note="ultra-conserved element locus uce-3154"
BASE COUNT          317 a          257 c          203 g          405 t
ORIGIN      
        1 agaagtgaat taccatgatt gatggggtat caaaacctga ttctttcatc tttataaatt
       61 ccatgattat gaagcagtct aatttaagcc ttgtgtagtc tgtctagcct gctcgttgtg
      121 acggttgcac tgctttttat tatgaaacct ctcactttaa ttgcaaaaga taatttttca
      181 ttactggtat gtgcaactga aaagggcact tctgtctttg gaggtaataa gatattttta
      241 aatgaatgca ttatgcatta aataacctat ttaacaaact ccattttagt ttgaataaat
      301 tggctttaat ttagcaaggc tgaatctaga gttagtatct ttatccttta ttgcttcgct
      361 tattttcttc ccttttcgtc tctggtacat agatgtagga tgttagataa gtgccttctg
      421 aaagtgaaaa cagtaaatat gcactaaata aggaacagct tgctctggag tctgcattct
      481 ttagcctaat gtcgatccac tgagttgccc cgtttctctc tgctcagctg gaccacgggt
      541 ttaccatcaa gagatcaggg tctttggact actaccaaca accaggaatg tattggataa
      601 ggtatgagat ggtgcagcgc caacagtcag tgtttccatg gcaacgtgct ggcagtctcc
      661 attaaccagt tccttcagtg gataaacatg ctttttgatt tgttatccag tccatatgct
      721 gctttatcag ttttgtttta atcttgattg agatgccaca cccacacatt ccttttcttc
      781 actcatcttt cacacctaca ttgccagctt cctctccatc gcacatgctc agtatcaatc
      841 tcctctatag ttaaaaggac agtgtatata gaaaatctac cagatatgct gaggtaccca
      901 ccccctccct ccctattgct tgttaaggca tctgctttcc ctgtgcttct gttctgaaac
      961 acacagagca ccaacaggct ctcagcatat attttcctct tttccatgtg agatgtggag
     1021 ctatatactg tcattttaaa cccactgagc acaatcctta ccttagattg aacaatgcat
     1081 ttacataaca ttagccgtag aaactctccc aagttcaatg aaatataatg cattgtatgt
     1141 gctgataagc ttgtgtttct aacaatgcat tcctcctctt tt
//
LOCUS       KCLA01001618             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26287upu ultra-conserved element locus uce-3238,
            sequence.
ACCESSION   KCLA01001618
VERSION     KCLA01001618.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26287upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-3238"
BASE COUNT          268 a          143 c          160 g          286 t
ORIGIN      
        1 ttctggcatg aacatccttg ggcttttagg aaaaaataaa aggttttcca accctgtgag
       61 gttaaagctt tgtcatttgt atccaaaata ccacagaagt tttttttaaa ggatggtgac
      121 acagtagtag caaaaattaa atcagcaaca aacttcttat attttgcatt tgatttgaac
      181 gtctaagttg accgtttctg gtgcgtgcat cagttcatta atacaggaaa attgcaatca
      241 aacagacaat caaatttcat gtaaaataag ctccagcatt aaaactgttc ccagtatttt
      301 atgtgtaact ctgtgggtag atatatttct tgctactaga gcaaaactga tttgtgtgat
      361 ggttccccat catgaaatca cttggaaggt tgtgagataa aatgtcgctt aggataatgt
      421 aattggcctt aaggtacagg agttgaatta ttttcagtga tttataatct ggaaattaaa
      481 gactcactca ttttctaatt taattccatc ttcaatggaa aaatgttcac tctgaactaa
      541 attggcgagt aatgttgcta attcaaatgc agatgcaatt tcgattctgg tagcagtttg
      601 ctgtgattga cgagtcccca atggatcata atgattctta tctcccaatc tcacaaattc
      661 tctagcagtt gtgataataa cttcagctaa ggagaaaagg gaaaaaataa attctctgct
      721 gcgctgtcaa ttcaggcttt gctttttctg acacggaatg gggtttattt caaatctatt
      781 gcgtgtcgga gacaaatacg aagcctcatt actaaattct gtgtcatcgt aaaaccgcgg
      841 tttaattgtt tactgat
//
LOCUS       KCLA01001619             897 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26303upu ultra-conserved element locus uce-1983,
            sequence.
ACCESSION   KCLA01001619
VERSION     KCLA01001619.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26303upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>897
                     /note="ultra-conserved element locus uce-1983"
BASE COUNT          266 a          152 c          182 g          297 t
ORIGIN      
        1 tgactatgca gggggattaa atgatctttg aggtccccta gctattttat gattctaact
       61 aaactggaaa aatatgggtc ttggcaattt gtggtacttt ctaatgttca gctttgggtg
      121 tataggtgtt ggttttgtca gacatatgct gactgatttc tgttattcac ctgcatcaag
      181 attaagaaac cactttttat taaataagct tggaaacaag ataaatgtat tttgcttttg
      241 tgtagcatgt attggatatg tttttctgat gagtgtttaa aatggtttct agtaccattg
      301 agatgaatgc attatttcct ataaaagcag tgcagagctg aaacagtctt ccttaatttt
      361 gatcagaatg aacaaaagtg tctgtgttta ttcctgccta atgcatcaca aatctgctga
      421 catgctaacc ttggagtctt ggctggcggt aatcaggcct gtgcaccggc aggaaagatg
      481 tacctaatgc actccatcag tgcagtttgc atatggaagt tctcacaggg gagctgccct
      541 gtgccagctg agggttacct gcccactgca gttattgtat gtaattatcg aaccaatctg
      601 ttcagcccag cagggtttag atagtaatca tgaagcaaca ctttggaaag gaaagatgta
      661 atgcactctc cccttctcac ataaactgtg tgaagttgta gtcactttga aagctgtatt
      721 agtaaagctc tagtctcaca ttaaaaaaaa tattaaaaaa gggaaaggtg gcttccatta
      781 tttattaaag ttatctatac aggtcaaatc atcatttgca aaaatcatgt ggcctaaaat
      841 gtcatctctt catatccatc ttaagaaaac tttgtaatag tgtgattaat tgtaata
//
LOCUS       KCLA01001620             267 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26319upu ultra-conserved element locus uce-2176,
            sequence.
ACCESSION   KCLA01001620
VERSION     KCLA01001620.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 267)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 267)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..267
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26319upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>267
                     /note="ultra-conserved element locus uce-2176"
BASE COUNT           67 a           58 c           53 g           89 t
ORIGIN      
        1 cttaagtctt ctttttcctg atacagtctg aatttgaaac atctaattta aaccattgaa
       61 gggccccgtc ttccttttat ttcctgtctg tactggagca gtcgcctgtt tcaattatga
      121 ctttctccag ctcctacatt ttttgtgctc cagctggctc caagtgcact tccttggaag
      181 gtaaaatgca ctaactgtgc tgatcagaga ctgatagctg caaagtcaca atatttaata
      241 gctgagctga taaaggaggg gggttaa
//
LOCUS       KCLA01001621             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26334upu ultra-conserved element locus uce-1636,
            sequence.
ACCESSION   KCLA01001621
VERSION     KCLA01001621.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26334upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-1636"
BASE COUNT          147 a          179 c          167 g          106 t
ORIGIN      
        1 ggagagagga ggaacgtgtc agcgcgacac gacatcgtcc tccggtccta acgcaatcaa
       61 taaccgggca atgaacgggc agaagcgggg ctgctgaaca catgaaagcg agaggcagca
      121 caaaacacaa ccgctttcgc caataaacgc gggatcgctc aagggaagtc cctccagagt
      181 tcctgcttcc tgattgatgt catctcaacc gcagcctgtg gtccaaagat cgccgatcga
      241 tcccggatac ggcagaggat aaaagagagc gggttatagg aacaccggtg cgtgggtaac
      301 gctcggtgtg ctggcacgca ggcccccgcg aaggagaggg ccccgccggt gtaccgcgcg
      361 tttgttttca cctcgccgtt gggttatgat gtataggcaa cgagcctccc gcggccttcc
      421 tcagctgaca gcgagccaag agcaagaacg tgctcccaag tgttgaaaga aaggcccatt
      481 ctctgcctgg ggaactgcag ctaatacagg aaatgaacac aagttttctg taagccgtcc
      541 agcttctgaa tcagctgttc ctcgcccaaa aatctcccgt cccccccgcc gccgccccc
//
LOCUS       KCLA01001622            1172 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26348upu ultra-conserved element locus uce-1120,
            sequence.
ACCESSION   KCLA01001622
VERSION     KCLA01001622.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26348upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1172
                     /note="ultra-conserved element locus uce-1120"
BASE COUNT          352 a          203 c          221 g          396 t
ORIGIN      
        1 tgctttctgt cttccagtgg aaaagattca ttacattatt ctaactacta gttttcagaa
       61 agagaatata tttcaaatct gttccgctca cctctgaggg tgagaacctg gctaaaatct
      121 gtctcacaac aggtttgtta aatccttctc ctctcagggt gaaggactat gttagcttac
      181 acttacttag tgtgtgtatg catgtctacc aaaaatactt gtaactacaa ctgatgaagc
      241 aataataaga aattttatct taaacatatt aaatcattca gtgccaaaat atctgtagct
      301 taattccaac tgatttatca tttgcttaag gaagcaagca aatgtaaaca atacaaggtg
      361 tagataatag attttttctt ttgtatatga tagtcttaat atttactata tgcagtcata
      421 taagatgctg atttttaata cttctttagc tataagaatg tgtgtttgct ttctcctgat
      481 tcacacagaa cagatggatg cttgactgcc tgctaatcca cagctggaat ggtttcagcg
      541 gtttccacgt tgctgggtta gagtggcttt tctagtggac tgagagggca gcaagagggg
      601 gatatcatta ttcatcagta tcccagtggg attgctgcca gcagagatta attttttctg
      661 ttatgcttgt aaaacaagct caggtggagt ctctaatcct cagggcacgg gtggcagatc
      721 aaggaagatg ctacaaagct agttaatttt cagattctag gggaaacaga agctctgtta
      781 gatgtataaa tacatgattg caaatttaag tagctcaaat ccaaatggga tcttcctaga
      841 catctggtac tgaaaatctc tgttttcttt gtttcctcaa agaagttctt aaaacttaaa
      901 cagaggcaat atatctggaa ctctcttaat catcagttat cttttcattg gatttttttt
      961 agtatagctc ttaacagtgc cattagttta atacctttat ttacaggcag aaaagacatg
     1021 gtacaagtct gtgtaggagc actgatttac agtattctca cacatttctt tgtagtgaac
     1081 attactaaga aaaattatgt cttgccactc agaacaggtt agagccatcc tagtaatgct
     1141 tgacatgttc cattcaggta atgagtgttc tg
//
LOCUS       KCLA01001623             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26364upu ultra-conserved element locus uce-1719,
            sequence.
ACCESSION   KCLA01001623
VERSION     KCLA01001623.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26364upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-1719"
BASE COUNT          262 a          136 c          125 g          214 t
ORIGIN      
        1 ttttctctta caaatatgca tgcaaaataa aaagcaaaaa ataaaaggta tatttccaca
       61 ggatttaatt gaaagacact ttacccaata tatttgccaa ccagaaaata ccacatgaaa
      121 aaacacaaaa cagtaaaact tagggcacag ccacagcgtg tagccacact atatgttata
      181 gacatgttaa aaattgcaaa taatctgtac ggataccaac tactatgttt acaatgttac
      241 ggtaacttat tctactagcc agcaataata agcataacat gtttgtaggc atgcaatcat
      301 gacctgataa aatagaattt attattaact aaagaaaagc atgtaaaacc taggatgagc
      361 acttagccac ctcagctcat ctgaatatat tcaaggttgg gtgaaactca ttattcagga
      421 ctcgcagcct tgataacttt gattttcatc catccatagc atggccaaaa ggtaccattt
      481 aatgaagtac cattcagaga gtaaatgggg tcatataata gacagtgcgg ttgcaccttg
      541 tgttcatgta ctgatagctg ttaagggtgc agtgatgaac caacagagct catttctcct
      601 tggtaataaa ttcatgctat taatatttat caaatgtgtg ggccgtctca actgagccac
      661 tgcacatgag accataaatc tctactatca tatcaatttt gaagcttctt ttgtacagtg
      721 tataaatttt agggggg
//
LOCUS       KCLA01001624            1027 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26378upu ultra-conserved element locus uce-7291,
            sequence.
ACCESSION   KCLA01001624
VERSION     KCLA01001624.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26378upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1027
                     /note="ultra-conserved element locus uce-7291"
BASE COUNT          257 a          214 c          229 g          327 t
ORIGIN      
        1 ttttctgtat ttctgtgctc tgattcagtg gtttaaagcc tgaattttcc agtggagtta
       61 atctgtaaat gcagccagaa cagttcagac aaaatttacc caaggaagaa gcactttatg
      121 agtgaagagt taagactgcc agtgtactgt ggtttgttct cagcaagatg ttcagtaggt
      181 ccacaagttc cagtttggga gcttagaatg gtcctgattt ggtttcagta tctgggattc
      241 tgtactgttt ggctcatgcc tctgtgggtg aagcagcaac cggaactggt tcagctctga
      301 gcctgggatt catgcaggtt tgtcaaggat ggcttctact cactgattgt ggtgtataat
      361 gctgtcatgt gaaaagaaat ggcagggcag aactcaaccc tcagaggctg ccatgaccat
      421 gcattcagtt aatacatctg tcattgtgtt gatttcccat atccattaac atgttttgtt
      481 cctttgcaat ttacagcgca gaactctgca agtgcaggtt ttgcaaactt tgatgcattt
      541 ggacagtcta gtggcttgag taattttgga ggtttccccc cagcaagtca gtcttttcag
      601 ccccaaaata caggtagaac tcctagcact tttgattaat actgaactga gataatcctg
      661 acctctgtgt tggaagatac ttgattgagt tcatttcttg catctgcccg ctttaatgaa
      721 gccaagccgt ctgaagctct ggggaaactc aaaatgaatt cctctgtttg gtgttgattt
      781 ttttccctcc ctgttgctac tcagaagtct gatttatggc actgcctgtc tgttagctct
      841 acacctgaaa taaatgactg agtaaagaga ctgctttgga taaacactca agtgaatctc
      901 ttgtaagaga agcacttcag cagagcctgg agcacatgcc agaaccaacc tagtgtgtgc
      961 ctctaacagc acacccattt gacttcacgt gtagagtcta ctgtgaagat ttcttttgct
     1021 ttccttt
//
LOCUS       KCLA01001625             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26393upu ultra-conserved element locus uce-2338,
            sequence.
ACCESSION   KCLA01001625
VERSION     KCLA01001625.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26393upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-2338"
BASE COUNT          301 a          172 c          202 g          297 t
ORIGIN      
        1 tggcatcata cagggagtta ccacatagtt taagtggaat tctgattcac cctcgttatt
       61 gcttgcaaca agaagaaaac atcttaaaac cacaaaataa cccatccaca gagataactt
      121 ggcaggcccc acggcttagg tataatttgc taggtgtaat tctatagggc caacacaaaa
      181 atgaatgagt gatgttttaa ctggtaacta ctcaactatg aggaaaaagt gaacgctgaa
      241 atctacagat gaacaattac acacatggca gattagcagg tgtgttaact attgagatgc
      301 agccattaaa agaagtgtga taacatttac ctgtatccaa gcgctttaca ggggactcat
      361 catcaacctc agaatctcca catgcactcc ttgatctttt ccttgggtgc agaagtgtct
      421 ccaaccttgg aaggactaca gacaaaaagg ttttggtccc tagctgtgga gaagttggct
      481 gggtttcagt gttctttgca gacttttggg ggcttatact tttcgatttg cagaagagaa
      541 tggatgtacg tctgtttaca tcagttgatg actcagctac agcagaaaca gtcgactcat
      601 tgagattact gtcaagtaag tgttctggag tgtgtccatt tatttctttc tgaatggaag
      661 tgctatataa ttcattatca aattttactc ttttgtaaag cttactctgc tctggattga
      721 gttctactgg tttgagggtt ggtggttctg aattagtctc caagtttgaa ggaagaggta
      781 atgcatctga tggttcaagt ttagggggag atttatctcc tgaaaaaatt ataaatagag
      841 tgtgattttt gaaaacctgt agttataaag tctattataa aactcactat aaatgtgcag
      901 cccaccaaat aaattgttgt ttggaaacaa agcataacat tttaaaaaca aaccttgtct
      961 agcaacactc tg
//
LOCUS       KCLA01001626            1013 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26422upu ultra-conserved element locus uce-7246,
            sequence.
ACCESSION   KCLA01001626
VERSION     KCLA01001626.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26422upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1013
                     /note="ultra-conserved element locus uce-7246"
BASE COUNT          299 a          206 c          218 g          290 t
ORIGIN      
        1 tttgagcagc tgaacaccag attcttctgc ctattatcag tatggaattc caggcagcct
       61 tgtaggaaaa cagcaaaaga caaagcccag tatgtgaaga tgcagtaaac agtgttcatg
      121 cacacagtgg cttgctctta gcatgtgcat ggctttcatc tcctcttaga ggcagctcca
      181 gttaatgttg atataaaact gtctgttaat tggcgtacat ggagataatg gtacgaataa
      241 tctctaagta aactcttaaa agctctggaa aaagggtatt taaaaaaaac cctctctccc
      301 ccaaaacctg agtttgcact ctgctttgaa gatagactca tcagtgtgcg aagcagactt
      361 ctgccttgag gccatttata gtgccgaagc ttgtgaagct aaaacagttt gatgtgtaat
      421 tgcaggagga aatggaaaac ctgctgagca tggcaggatg tagtgcttta tcacccttta
      481 tgtgcatcca gtgcttgctg aaattgccag cggatccgca acatcgacag aacggtgaca
      541 tttttcatgg gccgccgtgt tctgaatcaa cactgcaaca gtgcgattag agtaggtaaa
      601 gtagggggaa caatcaaaga gttgcatgtg acagatcagg ttttagtcat tccctgctcc
      661 ttattgcctg ctgtcttgtg tgatatgcaa aacagcttct ccagacgcat tacaccttca
      721 cattacctga aaattgaatt ttatttggtg gcctgcatat aatttatagc actctaccag
      781 tgcacttcag ttctcattta gctaaaagtg tgttctttat ttcctactgg cagggaaaca
      841 gagaaataaa actgaatatt cagcaccact tacagtatat aagaaaccag gctattgaag
      901 gttttagctg ctcggatgcg ttattgacaa gagctgtcta ttctggagtt aagcacacga
      961 tgtatctgat tcccagagga atcatctctc catagtaatt aatcaaggaa atg
//
LOCUS       KCLA01001627            1126 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26436upu ultra-conserved element locus uce-5490,
            sequence.
ACCESSION   KCLA01001627
VERSION     KCLA01001627.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26436upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1126
                     /note="ultra-conserved element locus uce-5490"
BASE COUNT          343 a          230 c          236 g          317 t
ORIGIN      
        1 atgatgctgt atatgcgaat gaaaaggata tttcctgtca gctgaagaca aagctgtttc
       61 accttcctgc tagaagcatt gccgtgcaac ctgcctcaca gagaagaaaa agagctgcta
      121 tgttcttttt ctccttgcac ccaattagaa agagagagaa gtccttacca ccactctttt
      181 ccttatgtaa gagcattgca aagacttgca tacaaaagca ctcgagtatt tgcagtgtag
      241 tacagctgac gattatctta caagagaaag cattcatttt agccaattgc cacaggcttg
      301 tcattaccga agagagcact gaacatacag aagaaaaggg gtattccagc cttctaccag
      361 ctaccttgaa catacttcac gtttaatttc accctgttgc cacaggcaca gtgttgttat
      421 gacagctgat ctgccattga atagctgtaa aggaaaatca acaaaggatc gcttcagcga
      481 ttttcagtgc aatttattgg agcttgtatc tcgtggctgc tgccgcctgt tggggtaatg
      541 acacatgatg ggtgattaaa gtgcaagtcc ctaaatcaaa gctgtgccaa cggtctgaag
      601 aagcagaaag catcattcag accctgttca tttctcgtag tgggagaatc tcattaggaa
      661 aaaaagagtc tgttttacta acgaaagtat cttgtgtcca ggggtgtcta ccgtgtctga
      721 aagatagacc atagctttct tacagaatct ttaagacatt gcatttaatg aaaataatta
      781 aaacagagta attaaaagtc accagcaagg acattacatt taaaccgagc tgtactgtag
      841 attgttgaca tccttatatt tagtgccatt tttgcctttg tttgtcaaga aataggtggg
      901 gaaagacaga gctgcccacc atgaaggtaa gggcaaagct aagcagctgg tcagctcatg
      961 agaaagaacc ctttgggata gagcaattca ctgaaatgat ttttctttcc ctttcccttg
     1021 cttttccgtt ccgaggagat atgtgagtaa cactgccaga gatttttaac tattttcacc
     1081 caatttctcc atgggacaaa agcactttag ctgagagagc tgcaaa
//
LOCUS       KCLA01001628            1211 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26451upu ultra-conserved element locus uce-818,
            sequence.
ACCESSION   KCLA01001628
VERSION     KCLA01001628.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1211)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1211)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1211
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26451upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1211
                     /note="ultra-conserved element locus uce-818"
BASE COUNT          388 a          248 c          204 g          371 t
ORIGIN      
        1 agtaaaacaa gttaaatatt tttagaagca gttttgaggt atgattgaga agaaggggca
       61 aagttaaaga tgcctttgcc tcaaagttca ggtttcacat aaggtgaatt caacttaaac
      121 ttgaatgaat actaatcacc tactcaattt tgagccacat aatagatctt aataaaaaca
      181 ttatatactt aaaagaaagt cacgctctaa aacattcata taacaactta acatataacg
      241 cctacgtcgt tctaatttca aacagaaatc tgttttaaaa atagaaaata gatttacatt
      301 atcatctttt tttttttttc tcctttaagc atccactcaa tttccaagct ttttcatttt
      361 ctcagcaaaa taataaccct tggaccatgt aggcagccaa atatcaggcc ttaaccatct
      421 gtcaactggc ttagattcag caagcatact cccgtagttt tagttctaat tgtgtttaat
      481 gctgcactaa ttatttcaat ggggaataat tttgtacagt caaagttgac tcattttata
      541 aactggaagc tcctcagcta taaattggca ggtctcatcc ttcatttctc ctaagcgttg
      601 tgccaaaggg gaataagtat atggttgctc tgtgaccaaa tgtcatgtgc tgggcagaaa
      661 cattgatcct ggctattaat cactctgcaa gccctcccag taatcaaagg gcacagctgc
      721 aatgatatat gaccagtgtc agagcagaaa gccctttaca agactgcatg cctaccagct
      781 gatggccagt atgtagtaca gcatgcacac tagccaaccc aaaatgccca ggccaattaa
      841 tcatcacctc taactgttca tactatcatt aaacaccttt attggctgaa ttatctgagg
      901 attcttaccc cataattact taggtctgga agctaggaac cttctcacct ggatacaaaa
      961 agctgcctat taactgctct agaccagctt gccctttcat tctcgccttc gtaagagttt
     1021 gctgacccag cagtgaacct gtgactagga gaaaattgga tactgttgtg actgatcttg
     1081 gtgtggttca tatcaatttg ttgaaagaac taaataatac tagaactgtc aaaatcatta
     1141 ggttagcctt aaaagtctca ggttgggatt tacaccccag aattgtgata gcaagtaaca
     1201 aatctgatat t
//
LOCUS       KCLA01001629             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26466upu ultra-conserved element locus uce-762,
            sequence.
ACCESSION   KCLA01001629
VERSION     KCLA01001629.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26466upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-762"
BASE COUNT          275 a          176 c          149 g          293 t
ORIGIN      
        1 tgatataaac aagaacagac tttacaggca gtgataagat actcgggcag ctgctgaaaa
       61 aaggctacag ctaaactaca aacagtatta gggttgtgtc taacttaata acttatttga
      121 aatgtcgcat gcatcgatgt tcaaagttct ccaaacaaac tggccttctt tttctattct
      181 cactcagcaa tgggtacact gaactcctga gacggctctc ctaacattaa gagtcactag
      241 catttcacaa ggagatcacc atgtgaaaaa ttatctttta aaacggagtt taatttgcat
      301 ataagaaaca ggagatttat gatgagcaac acagcgcagc actgcatctg cctagtatca
      361 gtcgtaattt agattgtttg tgaccgatct taaattctaa agcatagaga agatgaagtg
      421 ctctgttgct gtgttattgt caggagtcta agacttacca gagatttatt agtaatctta
      481 tcacaaacat gtctcaagtt tttgctttta atatgtgcca agctcctctg aggaattttc
      541 ctcactgcaa ttatatttct caatgcatgc attctgaagc ttagttgatt tccttcccaa
      601 aataaagcga cctatcatta cactacagta gctccactac atttttcctc tgctacttaa
      661 taatcaatgt attcatcatt aaaatctgag ccctgaagca atggttttta gcatattcta
      721 atgactagcg acttgcaaat tacattgacc tttcatgtac attctgtaag caccttgttc
      781 taatgtgtac tgtatttata gtttgccaat acaaactagc caaagattgg ataattactg
      841 taatctatta gctcgattgc tttccctgct catttgtagt atgtgccata tag
//
LOCUS       KCLA01001630            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26481upu ultra-conserved element locus uce-5805,
            sequence.
ACCESSION   KCLA01001630
VERSION     KCLA01001630.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26481upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-5805"
BASE COUNT          281 a          183 c          225 g          337 t
ORIGIN      
        1 aagccaaaac atcctcttgt atttaaaagt gctctcaagc tcattgagaa acacaaacca
       61 tggataaatt tcattctaaa tgtgtgcttg gtgccttgtc cttagtttgt cctgtggctg
      121 ggttcagcag ttgttcagca cagcattcca tgccttatgt tccatggtac ataggcacta
      181 gggatgagtt aagagtagtc tcactcctta acaccaaatg cccttggttt tgctggttta
      241 tatcacaact ttaaccttgc tttaattgta gagtgttaat ttaatttggc tgctttgtat
      301 gtgagacatc ttgcctgagt gactttaatt gcaccatcga gtaaagccat gaaacactga
      361 tgcactaaaa tcctggcaga ggtgtaaggt ttagttttat atggctcctt gtttggagtt
      421 attaactata tagaggaata aacccctttt aaaacttttt tttaaaacat tacaaactcc
      481 acaatgtaaa gttgccacaa gccagccaaa aataatacat atggcgttcg ggagtgcagt
      541 cgctaattgg ctgctgcctg agaaaatggt acacttggct tctacttaac actgtgggtt
      601 tggctgaaag ccagggttgg ggtgaggttg tgaatgaagc tgcatgtggt tagggaggag
      661 ttggagtgat tcatgtcttg aaagttgtag taagcagtgc agtatgtact tggggaagct
      721 actggaggaa actcctcacc cgtgttcctc ccccacagtt gcttccctgt acctgcactt
      781 atctctttag tggagggatt ttggttagtt tgaatcatta actaaattgg gctgtttagt
      841 gcttaattca cattccaata cttcttttct tgcagatgga gaacggagag gaggtagaaa
      901 tagaggagtt ctatgtaaag tataaaaact tgtaagtaaa ggactacatt tattttctac
      961 ctttatgctc atgtcagttt caaataggtt ttaaacactg gttttgtaaa tgatgtaacc
     1021 attact
//
LOCUS       KCLA01001631            1039 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26497upu ultra-conserved element locus uce-7354,
            sequence.
ACCESSION   KCLA01001631
VERSION     KCLA01001631.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26497upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1039
                     /note="ultra-conserved element locus uce-7354"
BASE COUNT          264 a          246 c          254 g          275 t
ORIGIN      
        1 aatggaaaga gaactgggat gcaatggttc cagcggaagg gcatcaccac aggatggtgg
       61 gtttgaagtt aacaatcttc tctctctctc tcggatctcc ccgcaactct gaaagaaaat
      121 ggccccactc gtgtatcacg gtcagattga cgtttgggca tgtcgcatcc agtctgcatc
      181 acctgagtac caggaattca acggttttcc ccctcccccc ccaattttgc tggcactcgc
      241 agacagacaa ggcatttggg gtagttcagt accagcccat ctctagttat caacagaagt
      301 ttgtgaggca aaacagctat tcttatctgt ccagcagctg cttcaaagct ctttctatgt
      361 tcattctgtg cccaactcta gtcactccaa ggtctatcag gtcttccttt tgtagatttg
      421 gtaaatgagt gccatctatt tcattgtcca taaaggtttc tttatgttca cctaagttta
      481 gactctccaa ccaatctgcc acgtctggtt tagtccacag gtggacaggc ttagttgtaa
      541 aaggcttatt tgagattggc tgttgtaata ttgagggaga aggagacctg ctgcgccctg
      601 tggtcaagcc aaacaagtcc ccggaagggg gctggctggg gaggctaaat acatcggaca
      661 aagttggaga aggagatgaa gctgaagcag aagcagtcag aggagcaggc atgatgtctt
      721 tattaatctc tgttggtgaa accacagggc ttggagcatg tcttgctcct gaggtcctac
      781 tgtcatagtc tggggacctg ctctgcagtg tgatcggctg gctggttcca ggtcggacag
      841 tgaaagtgat tgttgtactt cgtgtacctg agacagtact catgacttcc gtgctcctgc
      901 aatggtaaac agacacggca agttagatag agcggccccc agtcaaacct gctaaacatg
      961 gctttggaaa gcatgcacca gcagcatcaa agtactaaac tccttacccc ttgctcatga
     1021 atcataaacc atagatgaa
//
LOCUS       KCLA01001632            1112 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26512upu ultra-conserved element locus uce-3890,
            sequence.
ACCESSION   KCLA01001632
VERSION     KCLA01001632.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26512upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1112
                     /note="ultra-conserved element locus uce-3890"
BASE COUNT          346 a          201 c          197 g          368 t
ORIGIN      
        1 tcttgttttc caaatcaatt aactaattta aatactgtat ttgtttgatt ttctctctta
       61 ttttattcct ttccgtcttc tcactaaaag tagtaaggga tatgtaaaag gacagaaaaa
      121 agatccttgc taatcctgat gtgtaaatta aatccacttg ttttggtggg tttttctttt
      181 tcactttatt catagcaaat actatatagt ttaatgaatt aatattgggc ttaacaacca
      241 ttctctgagc agaacaaaat ttacagcttt cataccaatt ttttcagaaa tcacataaag
      301 ttccctttgt ttcagcaaag tgcatactaa acttcttacc ctaaaaagct ctatgtgttt
      361 cattggttgc aaaacattcg taactaagag gaaaaaaatg tgagtaatgg tgtttttaaa
      421 gaaaatatca gactctttgc taaccaagga cgtgctcaag tggcatgaat acttcagttc
      481 cagatgggtc agctttaggg gtcaagttgt gaagagaaag ccatcacaca cacttcatca
      541 acaccgtgga atgagagacc agtgcattta ctgagcaatg gatttccagt gagcgtataa
      601 actaattggt ggatgaacat gccccaggag caatgatttt aaggtcatag caggctcagt
      661 gaattgtgct gacttacact gtgtctcact gatagctgat cttaccaatg agcagtttag
      721 aggcattcaa gcctgaactc tcttccatgt gccttgaatg gcatgtcagc ggtcactgtt
      781 cctgacatcc tttatatttg tccagtcagc tttaaatctt taggttgagc gtcagcgtgc
      841 tcaggaaaga aaggagagaa gcaattattt tcagtcattg agttctgaag atcttagtgt
      901 taattatgcc aaacacggct ggttcatcaa caaactagaa atggtaaaga gaaaagagag
      961 agtgaaccaa tatttttggt gatccaaact atcccaatta taactttcta tttcttagct
     1021 tttactttaa tttctctcca tcaatttaac gctctatttt caaacttcaa ttgagtaaat
     1081 accgattttt atatgacatg ggaaattcac aa
//
LOCUS       KCLA01001633            1078 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26528upu ultra-conserved element locus uce-624,
            sequence.
ACCESSION   KCLA01001633
VERSION     KCLA01001633.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26528upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1078
                     /note="ultra-conserved element locus uce-624"
BASE COUNT          334 a          224 c          197 g          323 t
ORIGIN      
        1 ctagccaaaa cctgctcaca gcttttaaaa acccactcat gagcttttga tgttctagta
       61 tttccatcaa cttttccaca ggctagaaaa cccatgtcct acaccaacca cttttaattg
      121 aaggagcggg cattcaaaac caaactcacc ttcccacgtg ggtctgaatt aaaaaggcgc
      181 tgcacaaagc actggaggcc cgcttatata ggtcaaggtt gctcgggttc attgctttgt
      241 atattacagt ttaaagaacg ctctaaattc aaggttttta actttttaat ctatggggga
      301 aacttgctct aaactcagat taacaactgc taatgcactg aagaaagaaa cccggaaacc
      361 ttcttcctac tataaaaaca aaatagtgtg gcctctgttt cttttctgat aagagtctta
      421 aataccaaac atttaactgc ataataacat ttgctggcag ccaggcagcc tgcttagcag
      481 atatataaag caggtaaaag gagagaaagt taatttcttg gctgaatgat tccatcggta
      541 gctatagggc aaactagaaa gtcttttagt aaagtagcag ttgattcttc tatcaatctg
      601 cagcacacat actcttccaa ggaatgcatt aaatatgaaa atcatatccc gttatcatct
      661 gttcccagct ttcagcccag taagctttcc ttaatgaatg ctgtagccta agggacaagc
      721 atgctgttgg ctcctctgaa taatggagtg atgctcccat ccctgcttat tacaatatcc
      781 actagctgag ggggtttcac acatagtcac aagtgactac tcttgccagc atgctccaag
      841 ttattacaag atgtttttag acatttcatc taaaagagct ttactgcttt tagtgaagaa
      901 aacagctatg gtcttgaact gtatcattta tatggagata ggaggaggga ttagaagcct
      961 gcattactgc agatatatag cagaatatat tgaagtattc cttgtcagtc tttttgtctg
     1021 ttatttagat aagcaatctc ctttgcttct tctgagaaaa ggtcaaaaca cacgaaat
//
LOCUS       KCLA01001634             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26543upu ultra-conserved element locus uce-3692,
            sequence.
ACCESSION   KCLA01001634
VERSION     KCLA01001634.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26543upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-3692"
BASE COUNT          114 a           80 c           67 g          106 t
ORIGIN      
        1 atttgctgca aaactgtgtc acttcatgtt ctacacaacc gagcagagat gacaggactg
       61 aaatgagcta ttactacttc catcaggaag atctgaggga ccagtctgtg tctttgaggt
      121 aaaaatatat attcatcaac cgaggaagct ttaaaaagca gcactatcta agatatcagc
      181 atcccgtctc ccttggagac agctaaaccc tacatttatc taaattatct tggtaatatg
      241 acagagtgat tgctcactaa tggtcagtaa cagttttctt tgtcattttc ctagtcatta
      301 cctcttcaga atgaactcca gaataaactg ctgctgcatc gtgaccggaa tagaaaccac
      361 tcggtta
//
LOCUS       KCLA01001635             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26559upu ultra-conserved element locus uce-1170,
            sequence.
ACCESSION   KCLA01001635
VERSION     KCLA01001635.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26559upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-1170"
BASE COUNT          254 a          162 c          168 g          263 t
ORIGIN      
        1 aaaaaaagca ttttatcctg ctccaagtaa tatatttctc caagactaat atatgatgaa
       61 aaaataaatt tcccttctgg caagttaatt tgtagataac tgcggttggt tgaagatagg
      121 atttttacat taaacttgga atctgcacga ctgtttaaca tcattaaggg aatattatat
      181 tgactgcaag taactggttt ccgtgtggtt atatcaatct atttctgtaa gactgtacac
      241 tattgttccc ctagagtact ccttgtaatg ctgagaaagt gtcagaaata atgactgtct
      301 acctatatct gcaataaaac gtagagcatg gatattatag ctgtaagtat caaagattta
      361 tttcatgact gcaggtaatg atgaatcttt tagcacaact aatgtctaga ggaaacctct
      421 cttcttctct gagctgtcac atggagacta tttatagggc ccttagtgct gtggggcttt
      481 agcataaaga ggcaatgtgt ctgaggtgcc actggatgga aatgttagca agggctccct
      541 ctcattgaag atcttttagt agatggcatt agattccctc tttgtgtgct tacgttcccc
      601 caaagacagg ggacagatgt ttaacatcag accattaatc ccttagccca ggttcctgtg
      661 acagcacaaa cccaacagaa tgagcccttt gcctttgctc agtgtaaatg ccgcaattta
      721 ctgctgattt acagagtagg gtcaggccat tagaaacttg gcaatcttct gtacagctgg
      781 aaaacaatat gcatgataag ctaaaattca ataccttctt gcactaatta agtgggttcc
      841 caccagg
//
LOCUS       KCLA01001636             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26574upu ultra-conserved element locus uce-3310,
            sequence.
ACCESSION   KCLA01001636
VERSION     KCLA01001636.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26574upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-3310"
BASE COUNT          206 a          125 c          127 g          181 t
ORIGIN      
        1 atattttttt atagagtcaa tggacagatg gaagggatct gagaaagaca aagacagaaa
       61 catagaaact tcagccaaat acaaagagaa actgcctggg aaaacataac agagtaactt
      121 ggtgtggctt ggtactggga gctgaacttg cagctttgac aagactgact ttaaggcgac
      181 cttcagtgga gctccttaac agtgtatgct gggcaatcgc tggtaaatct ttattaattt
      241 taattggcgg cacccattta taagaaccat tacaaaggat aaattgagcc catccagcgt
      301 aatgtctttt gttaattagt ttgtcagcac tgttttaata tcccctaatg acttcatatt
      361 tcaggcctga cattaaagga gacgctgtga gaaaggaaat ggtcttatca ccatgtacat
      421 ttttttcttt ttttgaacaa aaagtgtcct tccaggcctg accaaggtta ggtgtcattt
      481 aactcaaaca gacaggtacc gtaagacttg gaagggctct atcatcctat ccaaacttca
      541 cattgctacc ggccagcatg tttgctgaga tttctttgta cagatccaca aaactacaga
      601 aaaaattcaa aagtcaccaa ctgatgacac tcaatagct
//
LOCUS       KCLA01001637             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26589upu ultra-conserved element locus uce-5866,
            sequence.
ACCESSION   KCLA01001637
VERSION     KCLA01001637.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26589upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-5866"
BASE COUNT          204 a          118 c          113 g          224 t
ORIGIN      
        1 ccacgtaaga atgctaaata ttctcagcaa ttggtattca gcaatgattt ataaatgaac
       61 atatcccata aacttaaata catattcctt cagaccttta aatctttctt tcagcataaa
      121 gacagatagt tggtgtagta aattaaagac gccttactgc agctattttg tccagcgttc
      181 tatcacagaa ccatattaat tttttatcct ttttaatatt attacacgat gcaggcttta
      241 tttaaatgga cttgacgggc tcttggttgg cttgacaacc agagggaaaa actaatgttc
      301 tgcatttaat ctcagctcaa ggcactaaat tattttggag gttgaagctg tcatgcatat
      361 catactaaat tattgaataa ctattagcat gatgtctatt tatagatatg tcttttaatt
      421 gttgtttact tcatgcatct tcagctaatt tgctaggaaa tatctcttat gctttcctca
      481 tccagtacag cagtactgta tcttgtagag gcacagcact ggaggttatt taaccagcaa
      541 cagaaaagga gatgatagag tcagcagtct ttaaagctgt gaaaataaaa tctctctcat
      601 gctgatgaat tgcatggtgt acacagcctg cgtagcacgt gtggttttaa ctacttcaa
//
LOCUS       KCLA01001638             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26604upu ultra-conserved element locus uce-1948,
            sequence.
ACCESSION   KCLA01001638
VERSION     KCLA01001638.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-1948"
BASE COUNT          236 a          147 c          192 g          264 t
ORIGIN      
        1 ttgaggctag gtataaaaag ggtgaagcct gggaaatggt ctgttaaata gaagtgcttg
       61 catttgagtt gtgtatgaag tgatctctgt gtacagttta tatgcatcaa tttaagtttg
      121 gatggcaatt agggttattt caggatgaaa ggtatgatat acatgaagct gcttttatgg
      181 ttatattatt aaataataaa tttctctcac ataatgtaaa acatccactg ctttatttac
      241 agtgcttcac tgcaaccata ttttactatc atgagacatt ccttgaccaa aaatgttgtt
      301 tctaatcaca gagtaaatta ataagattga gtgactgcag tctaaatctt ttttaaacta
      361 atctagtcga atatgtgctt ccataactag gccatagcag tgtgtgctgc cgtgcaagag
      421 actagggttt aattcttgga ttctgcttct cactccatga gcaggagcta ggagcactcc
      481 agagctgcag cctcaaccct gggagggatg gagccttgtg tcattcaaca gcagtgaccc
      541 ccactggcca atttaaggag aagcattgag gggctctaaa aggagtcact tccagtcctc
      601 ctcagaggtt ggtggtcatt gcacgggaac tagtgagtgg aggttcaatg ggatgcactc
      661 ggtggggtct tcagctttca gtctgaggag cagaatcctc tttggggagg aaccagcatg
      721 tatgcttcct gagacactat ttttgcctga cataactata aatggcagga ttgtcaagaa
      781 tatatatatt tttttgtaat gtcctgtaac taatgctgtg atatctatcc tttaaatag
//
LOCUS       KCLA01001639             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26620upu ultra-conserved element locus uce-868,
            sequence.
ACCESSION   KCLA01001639
VERSION     KCLA01001639.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26620upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-868"
BASE COUNT          173 a           95 c          105 g          163 t
ORIGIN      
        1 aaatgactgt ccataatgca ctatgaggtt tttaatagga tctgcaaaag aaatctatta
       61 actcgtgttt cctccgcaaa acatctaata cagtaaatga aatgttaata aatcaccagc
      121 agtttaggct gacgataaca tggattgact gcattgatta aattgattaa gtttcatata
      181 tttacaatat gtagacacaa gcccaattta tttcccgaag agttcaaggt aggtatcact
      241 ggtttggaaa aaaggcaaac caaaacaatg gagtaatgtt gtggttgcta tctgcaataa
      301 tctaatgctg acagagagca gtattttatt tagtaattaa cagtgtaaag gggagagaag
      361 ctgtcatgtt ggttcttaag ctggggagtg tgatgaaaga tgatatctgc gatctcatcc
      421 tttccacttg tttaggattg tcaggatgag aaatgtcagc attatgaaag ctcagctctg
      481 ctcttgatat gataaaaccc ttcaaaagcc agtctttctc tcccacttcc cccccc
//
LOCUS       KCLA01001640             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26634upu ultra-conserved element locus uce-1390,
            sequence.
ACCESSION   KCLA01001640
VERSION     KCLA01001640.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26634upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-1390"
BASE COUNT          228 a          145 c          131 g          196 t
ORIGIN      
        1 ttgttaaaac acctcgcgtc tgtatcctta cagctcgctt cttcccactg ccctcgagga
       61 agaaaccctg aagtttctaa aacactattt tctcgtggcg tgtgaaaagc ttacagtgca
      121 aatcctgaat atttcataga aaataaaatt atatttattt ttaagagcat tctaccttca
      181 atcctactgc atcctcacaa caaatctatt gcgttgtcct gacatagtta ctgcaaaggt
      241 ttttcctttg ctgtcccaag ggcccaattg atttatctgc caaaagccta aagccccaaa
      301 ataagatagc tttgagttta cagaggtcat ttttcattgt ctaaataaaa ttttctaaac
      361 aaaaatctct catcctgtta accgcagggt ccttatctcc ccagaggcta cagaaacctg
      421 agagaagcca tttcaattct tttatgaaga aagataaaag caagttttcg attagaaagc
      481 caaggaaagc tttcttatta aatggtggta acaggaacta gtcgaaaagg caaaaccatt
      541 cgaaggagga gggggaaagg gaaatcatta tgcataaagc aaacactata catgaggctg
      601 ccgagacaat ccaaagcaga ggcattctgg aagagaaggg aactccacga gcatttggaa
      661 ctactttgag ctcattcatg tatgtttatg aagcctgggt
//
LOCUS       KCLA01001641             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26649upu ultra-conserved element locus uce-5759,
            sequence.
ACCESSION   KCLA01001641
VERSION     KCLA01001641.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-5759"
BASE COUNT          235 a          199 c          170 g          260 t
ORIGIN      
        1 tttggccttc ctgtgtagtt ctgctccaca tcacttgacc ctgcaatcag ttccttatgt
       61 ggagtagtct gcaatattgc agtgattgcc ctctcaacct ggcaatcctg ctggggcctg
      121 ccatcatctc tggcctgact gagcagctga gatgctttct gttttgagac tttagagaaa
      181 gcatttccag agtgaaagga caacaagaat cgactccata ttaatgccaa actttaaatg
      241 ttttgactat aaaactgaaa ctccattacc tattccctgc agaactccac tctttctctc
      301 tctcctttcc ttctcctctc cacactgtag ccttttgtat gtctcaggca ttaatccctc
      361 gctgccgggg tgtgtaaatt aaagaataat agagctgcag aggcataagc ttgcaatgat
      421 ggggaatgtg tttgtatgct aagaagcaat ttcagcgaaa attaactcaa tttcatctga
      481 aatagtgaag accagcataa gctggcagat ccccgaggac ggtaaaatta cttcgtcaaa
      541 gctctgcttg cttaaattaa ccaagcaagc actccaggtt attggagaga tgcagccagt
      601 aactaggttt taacaaacaa aaatagcttt ttggatttat aagggaaggg catagcatct
      661 tatgtattct gctgatgttt taatctgtgt gtcctcaaca gcaagaccgt gacattcctt
      721 cagaatcttt cttccagtct ccatgtccag ctggtctctt ttcagagcct ttgcaaacaa
      781 gtacgatcca gaaggtggtt ttggagatga ttttggacaa acttttcccc aacaaccagc
      841 agactcaatg gttcagttta caca
//
LOCUS       KCLA01001642             971 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26664upu ultra-conserved element locus uce-53,
            sequence.
ACCESSION   KCLA01001642
VERSION     KCLA01001642.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>971
                     /note="ultra-conserved element locus uce-53"
BASE COUNT          286 a          210 c          151 g          324 t
ORIGIN      
        1 gaaggctcaa aaggtactag ctactcattt tggaagatca ctctgtgatt taatacccat
       61 cgctttccaa accatcttta aacctgtaac acaatgcaaa tattcctgtt cttgatttta
      121 ttgcccaaac agggctctct tttccattta ccttaaagat gatgctctga aagtaccttt
      181 tctgagctga aaaaagccaa gcctctcctg aggtcaggaa atccacattt tgatacacaa
      241 cttcaagtac cagagagatt gttgttgttg ttgtcatccc cctacaactc cattttagat
      301 agctgccttt taattgcaag tatcagcaag ccttgaataa tgattttatc tatattctaa
      361 atttagagcg gttaaatgca aagcaaaatg cagacacttt cttgtgtctt aattgaatga
      421 aggtcacagc tataacaaca tttaattgag ctatttttca ttatcatatt ttaatgactt
      481 tgcactgaca gtttgcctgc ttctgaggaa agagcatgat gaagtcgttt atttccctat
      541 ttagttattg tttgacaaca tcatcttcga ttaagactct gctttatagc acattaatca
      601 tatttgaatg agcaaggggt ataaatgtaa acgtatctcc catcctctgt ggttccccgt
      661 gtccctgcat gaaaacagcc taaacaaacg cttgcatcta ttgtctgttt gcataatagc
      721 cgacaacaag gctaaacacc cgtccttggc aatctaattg tcaccacccc tatctcaccc
      781 ttgcaccttt caggaagaag ttatgatctt ccacttctga atgctcaata attgtcccat
      841 ttatctcaat ttgcagttca gtctttaggc accagtagcc aaaatggcat cttttattat
      901 ttttttaagc cagtacctac aatgcagtgg caaaaggaga ttttcatttc caaataataa
      961 tcagtttaat t
//
LOCUS       KCLA01001643             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26680upu ultra-conserved element locus uce-7806,
            sequence.
ACCESSION   KCLA01001643
VERSION     KCLA01001643.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-7806"
BASE COUNT          162 a          155 c          124 g          215 t
ORIGIN      
        1 ttttctaaaa aatttctgta ctccacacag aaatacctgc ttcctctcat catgggaggc
       61 aaagaagaca ggaaacaact tcagaggatc gagtcgaaca tctcggagat gagtggcagt
      121 gtgacacaga caggtaaaga ttaatgactc catcaattca cccctcaaag ctttctccct
      181 ctatcctcca ttctgccaag actcccaccc ttttctttcc ctccatctcc actttatgtg
      241 gtgacttcat ttatctgctc tgagaatctg ttcacatttg caaatgaagc cgccgtcatt
      301 tcggtttaat ttgaaattgc ttgtttactg tcggcacggc ctcaattaat tatgttttta
      361 cggaaaggct cccaacctca gaatattaat aaggggaata aaatgacagc cttttggagg
      421 gctgtaaagt tcatttttaa tttctgcttc tctgatgttt tcaggggctt ttttttggtg
      481 ttttcccccc atcttccatc tgaaaatcca aagaagggtc aggagagtct ataattactg
      541 tgcctccctg accttaggca ccttctctgt tattgactct atagggtgtc tgttcattac
      601 ctgatgctct agtgatggtc tggactagct gttacctgtc atacccgtag aggttt
//
LOCUS       KCLA01001644             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26710upu ultra-conserved element locus uce-3440,
            sequence.
ACCESSION   KCLA01001644
VERSION     KCLA01001644.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-3440"
BASE COUNT          217 a          138 c          165 g          280 t
ORIGIN      
        1 ctcttatgta gacactaaaa ctgcaactaa ccctgttaat ctggttactc tttttccttc
       61 ttttggagat acatcaaact attgcgaatg ttcctataat agctgttgtt gtaacatgtt
      121 gttgtgatac tctagttttg agtgtgtttt ttatttttcc tgattgatta tctactgcat
      181 gacagaactg gtggcaaagc tgttaattta atgtaaaaac tttggatcca gcttctctga
      241 agtggctggt tacattctaa tttctgtgtt gtgttctagc ttatagacca attaaaacct
      301 ggaggaagat tgatattacc agttggtcct gcagggggaa accagatgct cgaacaatat
      361 gacaaactag aagatggcag tgtcaaaatg aagcctctga tgggagtgat atatgtgcct
      421 ttaacagata aagagaagca gtggtccagg tggaagtgat tttctgttcc acttcacaca
      481 cacgcaaggt gaaagggtgt gaattttaag cggatagact gcaaggcctg cctttgctgc
      541 tgtcattgct ttctgctcct ccatgccgtg aaaagtgact cagtttgcat tactacatca
      601 caaaaggagg ttatgctaag tttgagttat tttaaaagca gaagaaaaat attgcatggg
      661 ttgcactttg tctctttcgg acatagtttc tttagtcttt gtgtgttgaa gttccttatt
      721 tgttgttttg aacacagtat tttctgaatt taaaattccc ctccaataaa tgttctataa
      781 ctatctttcc cagtagttag
//
LOCUS       KCLA01001645             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26725upu ultra-conserved element locus uce-1128,
            sequence.
ACCESSION   KCLA01001645
VERSION     KCLA01001645.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26725upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-1128"
BASE COUNT          198 a          168 c          208 g          185 t
ORIGIN      
        1 acatgggtga agatctgaag tgtccaaatg ccagatgact tatgaataag gctgctgtct
       61 gcagcctgca tgggactctg cttttggcca aagaggctgt tcccattctg ctgaagaggc
      121 tgaaggagga ctacactggt cccaggccct ggggagggga cacagagcaa atatctgggt
      181 ttgacaccct cagtcatcac taattatgtg aactgcagag ttatgaaccc cttgtgtttg
      241 aggtgacaca acacagcaca gcgaggcgcg attgaaaagg ctggagatga aatcaaacgc
      301 gagggaaggc cgagagcgcg ccctttcttc tagccacaac tgttttgttg tggctgttat
      361 ctaaccccgt aattaggacg gcattcagca aaggcgaaca gagttggtat tcttttcata
      421 acccccaaat ctttgcgttg ctgcatgaaa cttttggctc cggctttccc ctgttcatta
      481 accatgccaa catttttaat ctaacaccac tgttaaagag tggcaggctt ccagggaaat
      541 atatcagcca ggcttattaa tttcatgcca agtgctggag gcgtgaatgt agagaacgct
      601 gtttgagttt ggataatggg aatcaggcag cttaaaggca ggggataaag atcaggagcc
      661 ccgtgtctca ggaggaggag caggtgcggg ctgcgagcaa ggccttcagg cccagagggg
      721 cagccagtgc ttaaaacaat ctgcggagct tttttattc
//
LOCUS       KCLA01001646             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26740upu ultra-conserved element locus uce-3826,
            sequence.
ACCESSION   KCLA01001646
VERSION     KCLA01001646.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-3826"
BASE COUNT          240 a          165 c          160 g          278 t
ORIGIN      
        1 ttttgttggt ttaatttgct actggctgaa aacagctaat aaaggctcag ttcaaagctg
       61 tctatttctt agtggggggg aaaagatgtt attctgacat cattgctctg aatgagcagc
      121 ctgtggttca tacagtatac gctcccctgg aatgacaaat tttctgcctt tttcttgggt
      181 ggaacgttca agcaaaaggg aagaatgcat aagagaagca aagcaaattc atttgtataa
      241 gctggccccc ctactgtgga attttcaatt atatatatct aattatggct gtcagttgat
      301 gaattgagaa aagacatttt ttgtcccccc tccttttttt tgtctcttcg tcatctcttc
      361 tgttagaatg attatagcac acttacacaa ctaattgcct tactgcttat tagtgataca
      421 attatgcagg ccagactcct tgtgtgaaca accatctgca gaggaaaaaa aagtgacact
      481 attcaaaact atccataatt taaccaatgt tattccaatg cactgagctc agacaattgt
      541 tgggccttca tatttcatac ccaccctgga aaaagaaggt tgtgagtttc ctcttttttt
      601 cccccccttt ctttcttttt ctctgtgcac tgattcacct ctttagactc actgtgaatt
      661 ggaaagaaag gaagagaaaa aagtgcttca tatgtcaaca aaaaggaggg aagtgaagca
      721 tggctaatgc ccattcctcc tgtgggcaat ttttcttcaa attttatact aataggcatt
      781 ttttcctgct ttagaaacag ttgagaaagt gcagatgtcc tgaccacagt gatgtgtgta
      841 tgt
//
LOCUS       KCLA01001647             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26755upu ultra-conserved element locus uce-1500,
            sequence.
ACCESSION   KCLA01001647
VERSION     KCLA01001647.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26755upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-1500"
BASE COUNT          160 a           77 c           82 g          158 t
ORIGIN      
        1 attagctgct ttattttctt tttaataaga ctaaattacc agataatatc tgttggcatc
       61 aacttggcta ataaaaatct gtttaatagg atttgccatt tttccagttg ctatcatgac
      121 cagctttgca ttttgattat ctttaaactt tgcctcaatt ttctcataga aagctctcag
      181 tagtaattgc tttaacattt attccaggtc aagtggttaa gtatgaataa tgatgtgtca
      241 aaaatgtaca gtagtgctgt caatagagca attacaattt agctagagat tattatggca
      301 caagagcata ttaactgggc acagtaaaca caacaacaaa gaaagaaggg gcaaagggac
      361 caaactgttt tttaaacctg acagtgttat acagtgtcta ctactgacag atattagctg
      421 ttacataaga gcaattaact ttgcaatcag cttcaatcgg cagcattgga ttagaat
//
LOCUS       KCLA01001648             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26770upu ultra-conserved element locus uce-1012,
            sequence.
ACCESSION   KCLA01001648
VERSION     KCLA01001648.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26770upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-1012"
BASE COUNT          229 a          197 c          195 g          357 t
ORIGIN      
        1 tccgctcgga tgccgtttag gctcttgaca ctcgcttggt ttagtttttg gtcctaacgt
       61 tgttcctaac agcattgttt gtaggtcact tgtggtttta agtgctaatt gaaggatcat
      121 atttctctgg gtgtaattgt tttgcagttt gttttaacat tagaaggctt ttaggcataa
      181 ctacaggaaa aatatagaaa taatattaat ttccccattt acttctctaa ctgtttttgc
      241 agaatgaatg tggattaaca ttgttatcct ttcctaacaa ttatctttcg ctactctagc
      301 tagtttagtt ctaaaagaca gagccattga caagggaaaa aagagaacct tctcagattt
      361 ttcagctcag cggtggtaat gttgcactga acactaatga gggaaccccc actgatttgc
      421 ctgctttgtg acttttctat ttcataatta tttttaaaac gcaaaacgac atgaggtagc
      481 ctagtcatgt ctctgcaact tcctggtagc tcagctctta ccgcagatgg caatttgttc
      541 ttgtaacata tatgtctctc tgaccatttt catctaattt gtatgggttc taccatttcc
      601 tttctctctt tcagggacct tgctgtgtgt gagctagggg gtggcatgac atgcttggct
      661 gggctcatgg taggtctttt ctcaattcca atcccattca gaggaagaaa caaaaggaaa
      721 aatgttccag tgcctccaac tgctgggtca gaggactgtc aacagcctca gctgcggtca
      781 agctgcagag ccttgagaga ccttctagat tgacttgctt tcgtatcata ttgattttat
      841 ggttgcctcg atgagcagaa acattttacc tccatgtagt cgatatttct tgttgtgaca
      901 ttccaggctg tgtatgctct gtctctcact gctgtagtcg aagctttttt tccccttttt
      961 tttttttttt tttttttt
//
LOCUS       KCLA01001649             962 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26785upu ultra-conserved element locus uce-5479,
            sequence.
ACCESSION   KCLA01001649
VERSION     KCLA01001649.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 962)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 962)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26785upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>962
                     /note="ultra-conserved element locus uce-5479"
BASE COUNT          221 a          189 c          207 g          345 t
ORIGIN      
        1 ccaaccactc tctcaataaa gaacttcttc ctgtttcatt gtttgttata atgttaacct
       61 cactgtaaac attttaaacc ccaaagcttc attgttttat tgccttcatt ttatttttcc
      121 tacagcagtt tttggaaact ggcaaaagct tccatactgc tgaatgaaaa tgccacccag
      181 tgattttgtc tcttaggtgt catgttttcc atgttaaatg tctttgggtt cggcttaatt
      241 tttgtttcct ttggtttttg gaggtgttag agctggaaat atctctatat tcaacattgc
      301 tttgttccag ttcaatgtgc agtcaagact tattgggagg tgcaaaactg gttttgttct
      361 ttttctgttt tgaagtttta tttcatttgt atttgatgtg attacgtgcc tttaaaatgt
      421 tctcccttcc attctgccct tgtatctttg cagtcattgt atacagcaga ttctagaaag
      481 tgttaatcat tgtcatctaa atggcatagt tcacagagac ctgaaggtca gtatctggtg
      541 cccatcaatt ggatataaga gttttggggg gttttttcca ctgggcaggg gcagagggtg
      601 ggttgtttgc aatgttctct tgcctatcct actcgccctc aaaacaatga gatgaacaaa
      661 caatgcatga agtctctttc cagtttgcaa gtctccaggc ctaatacaca tcatggcaaa
      721 agtgggaatg gttgtcaagc ctgtctcctt ccaaggggtt ggattgcccc tgtgctgttg
      781 aacgtgtctg gtgttatatt aaggctgtcc atgtcttgct atgggaggtg atctttggct
      841 gtggtgtatg tcagcttgca gatgtgaatg ccacttctgt tctaagaccc ttagttacag
      901 tagcagaaca gctggtcaca cgctgctgtt tagagtatga caacccctca ggcaagtggt
      961 gc
//
LOCUS       KCLA01001650             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26799upu ultra-conserved element locus uce-3557,
            sequence.
ACCESSION   KCLA01001650
VERSION     KCLA01001650.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26799upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-3557"
BASE COUNT          121 a           83 c           64 g           98 t
ORIGIN      
        1 gtaaacattt ccccctttcc tagatgagca aaatgcgttg ttgatcccct ccccagtaac
       61 aacccctgag gcgccatcac ccaaaagcct ggatttttcc taccatccca agtctataaa
      121 aatacagtcg tacatctctg tgatagataa gaaatactca aggagcaata gtaattaatt
      181 gccctccaag atgaaactgc agttgctcag acggctgtct ccacataatc tgtattttat
      241 acaaaaggag aaagaactca atggaatttc agctgtgacc ggataaaaac tgccaacaag
      301 aagtgataag gaaagtctaa tgtgcgtatt aatcatgttt atagcgcctc atttgctgat
      361 atatta
//
LOCUS       KCLA01001651             446 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26814upu ultra-conserved element locus uce-6770,
            sequence.
ACCESSION   KCLA01001651
VERSION     KCLA01001651.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 446)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..446
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26814upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>446
                     /note="ultra-conserved element locus uce-6770"
BASE COUNT          145 a           86 c           80 g          135 t
ORIGIN      
        1 tgtccataaa ttttgccgct gagtgggaaa ccatccagtt agcataaaca ctatcatttg
       61 catatcttga aaacatagag ttagtgccat cgaatcttgt gagtggaacg gggctctcct
      121 caggccagtt cgggtatgac atgcctaaaa atgaaaacag ataatttgtt ctgcactgaa
      181 gaaccataag ttcatgtgca gacagtaaag cccttggcaa aactcccttc aatattttta
      241 tccagtccac tggattttgt cccaaatcaa ttcataaaaa tgatgtttag aaatccctga
      301 agcactattt cagatgtaga taaaaaactg gaaaaaatga agtgcttact tgctaaaaaa
      361 ttgcatgtgc tcacatacat gtctgtaaca aaaagctaag cagttttctt ctgatgagcc
      421 tctagctttc tggaatattt ttttta
//
LOCUS       KCLA01001652             937 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26828upu ultra-conserved element locus uce-2169,
            sequence.
ACCESSION   KCLA01001652
VERSION     KCLA01001652.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26828upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>937
                     /note="ultra-conserved element locus uce-2169"
BASE COUNT          258 a          181 c          273 g          225 t
ORIGIN      
        1 gaggaggaag gaaagaatag ggtgagttgt gagggcttct taaaataagt gtaaggctgt
       61 gtcagcctca ggatttgagt cctgtgtctg aaaaagattg tgcagctgcc accttcactt
      121 tctgatctcc tctagtgttt tgtggagcta tgagcaacct gctattcttt ttatttggca
      181 tcttctgctg cattactgag tgtgcataaa attcccagca aaagatggag ggcaggaagg
      241 aaagagaaac cttaaggcct cacttgtggt gttaaacagc aacaccctcg agtgcagtga
      301 agcacggcct gttttacagg taagtgggga gtatggaggt agcttgtctg tgtgtgaggc
      361 catgtagcac ttcttcccct tttcctgaca tcaggttaca agacagatcc atgagcatga
      421 gcaggagaac gagttgcggg aacagatgtc aggatataag cggatgcggc gccagcacca
      481 gaagcagctg atcgccctgg aaaataagtt gaaggccgag atggacgagc accgcctcaa
      541 gctgcagaag gaggtggaga cacatgccaa caactcgtcc attgagctgg agaagctggc
      601 caagaagcaa gtggctgtga tagagaaaga ggtgagaaca gtcacaggct tcttagctgt
      661 gcgtgaagga tggaggggtg tgtggcaggt ctctgagaca gcagtgaaag tactgcccaa
      721 aaccgtgatc actgtctggt tactacaagt gaaacgccat ggacactgac caatgttaag
      781 agactgacaa agttcctcct gcctgagtag gttaccaagc ttgatgctgt tactcagggt
      841 gtttaaaatc aataccttaa tccagctggt aaatcagtgg gactggggtg gttttggtgg
      901 tgatgtaaga taactaggaa acttccatgt atgaggg
//
LOCUS       KCLA01001653             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26844upu ultra-conserved element locus uce-2697,
            sequence.
ACCESSION   KCLA01001653
VERSION     KCLA01001653.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26844upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-2697"
BASE COUNT          257 a          180 c          182 g          214 t
ORIGIN      
        1 ctataaaata cgtggcagca agcaaatgga aagcacagga aaacacaggc gaaaacagga
       61 caataactct aaatctgaaa gctgagaccc gatagagtca gtccagttgt gcaatcattt
      121 ataagatgag tgacagttta acagccacta gacagtcccg ggggacctgc ggtttgaaag
      181 taaaatgggt attgtctgta cctctttagg ctgttttcca gcatgttgtt gctgtaaaag
      241 ttgaagctgc aactgttcct gttgtttctt ataaaactct tgaagctgct gctacaaaga
      301 aaaggggaga tggtaagtaa caaagtggag agccaattca ctgtcccttt tggactaaca
      361 cacaaactgt gatttgaaaa atagcatcct tttatctgta atggcctgac ctttagtttg
      421 aaactcaaca ataaattcag tgcacactga ctattcttgg cattatcgtt tgaaaagtaa
      481 tctccaaaat gaactgatga aaaacatacc attttctaca caaactaatt aaaataaggc
      541 aaggaatgac ctttgattgg aacaacaaag ccaaaatgcc cttgctgaga gagcctgccg
      601 aatctctgtt gtgaaacaca tacgctttct aaatgatggg gtttgactgc attaagtgtt
      661 ggccaatacg cgcatggaca tcctgggaaa taccctcctc ctcctcactc cccagacgtg
      721 tcctgtgcca gcaggtggga gcatgtgagg ctgtgctgga tgctgaaccc acccaggatc
      781 cttgaccccc taagataaca gagcctcagg gtctgtcggt ggccaacttt cag
//
LOCUS       KCLA01001654             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26858upu ultra-conserved element locus uce-1408,
            sequence.
ACCESSION   KCLA01001654
VERSION     KCLA01001654.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26858upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-1408"
BASE COUNT          255 a          160 c          223 g          284 t
ORIGIN      
        1 gtgtgtgtgt gtgtgtgtgt gtgtgcgcgc ggtgtgcgtg tgtgtcattt acaaatgcaa
       61 agataacagc aagttcttag ttggcaccaa atgggggacc gttaagtatg agaaatgatg
      121 tcgatttatc attatattat gcctctgaca gcgaaacaca cctgtacttt ttatgtaatt
      181 tattgactgg ttatagatgc tgtgcgagag aggaaaaaat tagcgcagct ttaattactc
      241 atgctgctgg ttaaaatatt aatggggcac agagtgttgc atgctcattt ctgttgattt
      301 ttaattagca gtaattcatt ttgcacaaag catgttgatg cctttgccgg agacattagc
      361 gaagtagctg aataaagatg tttttgagag agctactgtg catacagaat aaagagtgcc
      421 tgctttctgt cttgtctgat aaaagttggg caaagaggga gacagatgat gaaaccaaac
      481 aataccagag catcatggta tagctttaca ttcctgactt caacaaattc ggagttttcc
      541 aggtgcctgg gtgtctaaaa tatcagggta ccttgttttg gttattggct tcgtttttgt
      601 tgatgccaaa agcaaccaag atgggtgaag gtagaaaagc ccgcagtcat tttggccatt
      661 catgtcctaa aaacattttc ctatggaaaa attccttcta gcaaatggga cttgaaacag
      721 atccgctggt tgggatgggg ggaactctcc cctcttgctc ctatccttct caataaggat
      781 acctctacct tgtggtggaa attatgggga gtagtctcca gtgctggtgt ttccaatcct
      841 ttcaaagaga gagataaggc agtacctcct gaagatgaag cttctgggtt ctgagcattt
      901 atttgtccaa aacagaagca ta
//
LOCUS       KCLA01001655             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26874upu ultra-conserved element locus uce-6381,
            sequence.
ACCESSION   KCLA01001655
VERSION     KCLA01001655.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26874upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-6381"
BASE COUNT          113 a           78 c          106 g          144 t
ORIGIN      
        1 agtagttctt tggatggttc ctctttttaa atttttttct gtcccaaaga tggcatctga
       61 gttttatcta aaccagacga tttcttggcc ctcatttttc cctaaaccct gcgatgacaa
      121 agagcaatgg ctgcataaat tggatgtgag aagaacactt agggtttatc acagaagaat
      181 caaagatttc atatcttctg acagattgtt tgtactctta gggggtctta agaggggtca
      241 aatggcttct aagagttcct tagctagatg gttaagggat tgtattaggg aggcgtatgt
      301 agttaagggt aaagaggctc ccagggtttg taaagctcat tacactagga ctatagctgc
      361 ttcttgggcg gagaggtcga aggcttccac attggaaatt tgcaaggtgg ccacctgggc
      421 ttctcttcat actttttcat t
//
LOCUS       KCLA01001656             555 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26890upu ultra-conserved element locus uce-7491,
            sequence.
ACCESSION   KCLA01001656
VERSION     KCLA01001656.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 555)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..555
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26890upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>555
                     /note="ultra-conserved element locus uce-7491"
BASE COUNT          115 a          152 c          152 g          136 t
ORIGIN      
        1 ggctggctgc ggcgcgctgc ctttgctggc tcggctagct cggctagctc tgctagctta
       61 ccagctgttc ctgctgctcc cgacaatgtc cagcgtgttc ggatcaccgg gttcctgcac
      121 tcgctgccgc gcgcagacag cctttccgct ggggatgccc acgtggggcg cataaagtag
      181 caggccctcg catggcatat ggtgtctgga ttcatacaag atgcaaaact attctgcgcc
      241 taatgcacaa tgactcatag cattgctaat ttctctaaca aaagcccact tccacaccca
      301 cactttcaag cccccggggc tagaggcctc ttctttaaag gcttggaaat ggaaggaggt
      361 ggcttctgga tcaatatttt agttatttaa agcatatgcg agtcgcaacg ctcctggaac
      421 ggcagggaaa cgcagttttc cgacgcctgt gctagcgtgc ggtcttttta cccagattct
      481 ttgtgcgacg tcaggggggg ttcgaatcgc aaaagtcggg ggagtcacag aaccccagtg
      541 aattcttgag gctgg
//
LOCUS       KCLA01001657             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26905upu ultra-conserved element locus uce-319,
            sequence.
ACCESSION   KCLA01001657
VERSION     KCLA01001657.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26905upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-319"
BASE COUNT          243 a          196 c          176 g          231 t
ORIGIN      
        1 gggggataga tgagaatctc agataagtgc cagtaaacca agtttgctct acagctggca
       61 agcgctgtgt acacgttaac ggtgccttat ggcactattc aatccaacga ttctataaac
      121 taaaaataat caccctaata ctaataccta ttattcttca ttgttaccgg tcgctatggt
      181 gctgcatctg actatgaaga attcaccgcc attattaccc tccgtgtctc tctctctctg
      241 aaatgtgatc taattgcaga atccacacct gttcgacagt tcaatagaag cctgcttttg
      301 atggaagcag actttcaagc acacgctcat acacaggcac acgctcacgc agaggcacac
      361 actggcacac aaatgcgtgc acgcgcgggc acacgccaat tcaccgaaga cttcagctgg
      421 agggagaagc gagtgtgagg cgatcagaaa ataatattgc gaggagtaaa aagaggaaaa
      481 aatgcttgtg ttttgtggtc attggaagat tgctgatggg tgcataaata aagcatgctg
      541 gaacatctgt tctttgttgt gcattcagct ttttaatgtc ttcaaagagc agcactgacg
      601 catcactgac taccactccc cattcaagca acattttacc agaaaataat aaaccttcct
      661 ggtggggtgc aaggagccaa agcatttggg caacgccatt aatttggaaa tatctctttt
      721 tctgggattt ttaaatatct ctccctttga acattgttca aattttggga tccagcctgg
      781 agtccctatc agccggagca gtaaatcagc ctgaatattc cactcaagcc ttttctttct
      841 gtaccg
//
LOCUS       KCLA01001658            1002 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26921upu ultra-conserved element locus uce-1027,
            sequence.
ACCESSION   KCLA01001658
VERSION     KCLA01001658.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26921upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1002
                     /note="ultra-conserved element locus uce-1027"
BASE COUNT          278 a          224 c          192 g          308 t
ORIGIN      
        1 tctttctggg ccatgaaagc aaagctgtca aagggtcaaa ccaagggagt ctaggcagca
       61 gtactccgtg cgtcctgaga gatgcatttc cacccaaaag aacgcccgag atgtgaggag
      121 gttagaatct gacacgagtt gtccctttat gcaaaggctg cagagaaacg atcagaaata
      181 aacttcattc ttcagccaac ttgctcagca gcaggaggag cacgcagcta cccacgtgag
      241 agttctgcgc tccactgcga tcagatggta aagctgagtg ctcagtgagg caggcgtaag
      301 ccgtttcctg ttccagctac accacgggac agagccattc aacaaaactt gtagaagttt
      361 ctccacaaac aggtactcgg ggtggatgca gacttgattt tacaagtaca tctgttctgt
      421 ttatttttgc ttctttgcag tattatcaac ttctgctcca tatggatgat ccatattgtg
      481 ccgtggtgaa atgataccac attatgcttt tatgctttta tcatcaaaca ctactcagga
      541 aaaaatcacc aggtttgcct aggttcatct gttcaattta ttttcccaaa actttatttt
      601 gaataaaaca cctacggtaa atgtgattta tgtaaatgaa taaaacaaaa cagttatata
      661 agctttttga atcattcaga tcctttctgt tgctcttaaa ccgtatgaaa ttaccaacat
      721 attttctttg ggctattcca tctctcaagt actgcagcta aatatgtgga ataataggat
      781 acgtacagag gctttcattt cgctgttatt ccccctctct atgccaatct tttcagacaa
      841 agcagctcta ggatttcaaa gagagtttta cttacgagct tttccagtct ctttccaaat
      901 gtctgttgca agattttcct tccagcttgg aagtggactt gcatttaatc tcttcttttt
      961 cttctctgtt ttctccctcc agacctcaag tcagaggaaa ca
//
LOCUS       KCLA01001659             430 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26936upu ultra-conserved element locus uce-5038,
            sequence.
ACCESSION   KCLA01001659
VERSION     KCLA01001659.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 430)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..430
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26936upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>430
                     /note="ultra-conserved element locus uce-5038"
BASE COUNT          130 a           69 c           85 g          146 t
ORIGIN      
        1 taaaccatac caccaaccag agtatgaata tattgctctt cttaaaaatg cttgttggtt
       61 tttcatacta cagtattgac taactgtccg tgtttgatgt atggtttacc agcctgatgt
      121 agacttatgg ttagagctta acttgttagt tctgcttttg cagccaattc agaataacta
      181 cagatgcccc aagatattaa aattgactgc tcaaatggac tcagtgtggg agtttcattg
      241 gttttaaatt gataacagct gaaagagtga atgattaaag ctgtatatgg gcatagtatg
      301 cagctccttt gtacaagctc ttgtgaacag aatccgctgt atgggaattg cctttgttct
      361 aataaaagat atttctgagc aattgttagt ttaaattttt aaatgatgaa acaagagcat
      421 ttcaggagcc
//
LOCUS       KCLA01001660            1222 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26951upu ultra-conserved element locus uce-7558,
            sequence.
ACCESSION   KCLA01001660
VERSION     KCLA01001660.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1222)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1222)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1222
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26951upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1222
                     /note="ultra-conserved element locus uce-7558"
BASE COUNT          334 a          255 c          257 g          376 t
ORIGIN      
        1 atcaataaat aggcaattca gcataaacta gaggggaagt taaatcttct gtgatctttc
       61 agctgaacgg ttgagtcgta cagactctct ttatacctgg aaatcatagt ggctcggtgt
      121 cctgcaccat ctacgtggct tgggaagatc agtaactgca tgtcaagatg gtctggggaa
      181 aggattatgc acatgcagtg caactagcta ctaaaatcag cctctcaagt atttgtcaga
      241 accagatcta aatccattga tgtcaagtgt gctgattttc tttggatcgg gatctattgc
      301 ttgaagttta tattcaatat aaacatcata tgcaataata aatcttggga gcacaagctc
      361 ggattgttta tttgatttat tatttcattt aatgtagcgc cgttccattt cattgcagtc
      421 ttgtatttct ggttcctctg taacaacctt gtaaaagtga cagggaggct cagatctttg
      481 cccagcaaac aatatatatt atttgctaca tgaaagtggt gcacaactct cttaaatgtt
      541 ccctagcaga ctcctattgc attccacaat gtgcctgcac ttgaaccacc tccattcata
      601 tcagactctt tttatcccag cacacattga gcaagctgct ctgaagctta attctcctga
      661 cccttcagtg cagtcggata ttgtcaccta atcccctttt tttccttctg tcccatgtgt
      721 ggttttgact tctttctctt ctcaattcct ttttcctctt ccctttttct ttctttctta
      781 ttctataagc ctctctccag gctccacatt ccagaattca tccttgcatt agggctgcaa
      841 tacaatgctc tcccagtgtt aaaggattag acattaagga gactgtgaca actccagcct
      901 tactatatgc gcagggggaa cataagggga cggaggagtg cttgctaaag agtaaggaga
      961 ctgggaatca aggggggaaa atggcatctg agcaaaccca gagtggacga caaagagatt
     1021 tgtgtaagga atagtagttt ctgctcagct ttaagttgtc tctggaagac agtaaaccag
     1081 ttggaaagca aagcaacaca ttgcacaggg attgggacat taaatgcagt ttagtttcaa
     1141 cactgagctc tgaaaaatgg ccagtttgaa gcaggggtgt ggtgacgtgc cgatatacat
     1201 catgagagtg ttatctgaag gg
//
LOCUS       KCLA01001661             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26965upu ultra-conserved element locus uce-2233,
            sequence.
ACCESSION   KCLA01001661
VERSION     KCLA01001661.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26965upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-2233"
BASE COUNT          147 a          112 c          104 g          145 t
ORIGIN      
        1 tttttttttg aagtgcagcc ttctgatcaa tgtgcgcttt ttttttccat ttccctaaat
       61 acatcatgaa aaaggatgag gtttccgcct taattgcttg tgccttttat tcacattcct
      121 ctctcagcca gaattgtgaa aagagtgtta gtaaaaggct gcacaataga gcttttcatt
      181 aggcctcaac aaggcacaca aaagaaggct tttggaaaga gtgaatgcag gactttaatt
      241 tgcaggtgga gagtagataa aaggtgctga cgcctctatt attctcttac ttaggtgacc
      301 cttaccccgt tcagctgatc ccaactacca tggcagctgc tgccgcagca acaccaggct
      361 taggtccact ccaactgcag gtaagtctga aaacaatgca gaagaggcaa aggttaagta
      421 aatatgaaaa ccagctttct cgcccattgg aacacaatgc aattaacagg ggtctgctct
      481 gctctcttca caagatttgc aagataat
//
LOCUS       KCLA01001662             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26981upu ultra-conserved element locus uce-6,
            sequence.
ACCESSION   KCLA01001662
VERSION     KCLA01001662.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26981upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-6"
BASE COUNT          273 a          154 c          143 g          272 t
ORIGIN      
        1 ggtcatagac tggacatcac agttttacag gaacaaagaa agatgaggtg ttcccttcac
       61 acatgctcat attaaaaatt tactagggaa gtttcgacat ctctaaattg ataggcagat
      121 tttaagtccc atgtaagtag tagagtagta ataaatgcca gctgttattt tacataaata
      181 ttcgaaataa aagcatcctg caaggagggg cagaacctcc agaagcatat cttcgttttt
      241 ggtagtttag tccacagtaa caaaacccac attgtaccaa tcagatattt aatgagcctc
      301 taactccatt tctaccttat cccaaaggta tagcaaatag cgctgctttt ttaaaatatc
      361 aagaaaacat catttgctct aaaatgtccc taaaagcagg tctaaattgc caataaaggc
      421 caggtaattg tatcagcatg gatcagaaag catttctcag aactgatgaa atagtttgca
      481 gtattgcaga acctgaatga tgctctctgt acattacact ggaaatatca gagactggtc
      541 tcagtttaat ttgctcacaa ctgtgtattt tagattctca ggaaatattt cttgctaatg
      601 tcattctggt tttcgttaaa tgtaatttat ttggagaaag tcagatgatt tctgcaatct
      661 cgagttcgct tagaattttt gttttgcttg tcaatcacag aatactcttt ttccaagaaa
      721 aaagcacatt tgaagattct caacccccgc gttcttgttg tattcaagat tttaaacatt
      781 tcaaatttaa aaaataattc acaggtctgt tgcctagctt atcagttcag cctcagtagt
      841 ta
//
LOCUS       KCLA01001663             360 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 26997upu ultra-conserved element locus uce-2593,
            sequence.
ACCESSION   KCLA01001663
VERSION     KCLA01001663.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="26997upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>360
                     /note="ultra-conserved element locus uce-2593"
BASE COUNT           84 a           77 c           89 g          110 t
ORIGIN      
        1 tccttgcgct cttctttggt gcagattgtc ggctaatggg gtggagctcg tgcgagcgct
       61 ctctattaat ggagcagaat ataaacagaa taaagccttc atttcccggg ctgtgatttc
      121 attattaata tactttacag ttcacaggtt gttcatttgc ttccatgttt tctcagctgg
      181 tgtaatctgc ggcacagagt gagaagagtc ataaaatttc catttccagt tgaatgtgcg
      241 tccaattcgc cgtgaaatgt ttctctctgt cgtgaatatt aagtgcccga ggagtcagta
      301 gccgaaggat tagacagggc aggttgccag cccctctccg tgtctccaag gtgcaagaga
//
LOCUS       KCLA01001664             658 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27012upu ultra-conserved element locus uce-4839,
            sequence.
ACCESSION   KCLA01001664
VERSION     KCLA01001664.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 658)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..658
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27012upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>658
                     /note="ultra-conserved element locus uce-4839"
BASE COUNT          204 a           98 c          133 g          223 t
ORIGIN      
        1 ttgcttttgc ctacagaaaa atacaagtgt tttctttgtc tgtgtttact ttgatgccaa
       61 agcattcatg actttatttt taaactaatc ctaggttatt gtgcaatgag gtgcaatttg
      121 ttcgtttata tgaaccttgt gtggattgaa aaaaatcaag ataaatcttc atgcacagcc
      181 tacaatcaga ttacccctgg actatatatt tacgttggat ctgatagcaa tcaatggttt
      241 agcttcattg catttcaaga tgtatttgca cccagtgtcc agtgatagtg tcttcaccct
      301 ggaaataatt tagttgcaaa ttgactggaa gatggtgaaa attgaaagtt aaaattagaa
      361 atactcataa taaacagcag aaaaaaggtc agatgatgct gcactatgat gagattggaa
      421 tggttggtaa atgaggtttt gtgtttgtcg tgagatgtat gtgacatgcc tacccaatgc
      481 ttttgtaata tccagcctag cagaagagat tatctggcaa attgacgctg gaaagaattt
      541 tctgatggac tgggaaatta gaattgcact cttttctttg atgtgtgcat gactgggcca
      601 cattacacag ctagttcagg cataatatta aatatagtat ttaattctta atagtaga
//
LOCUS       KCLA01001665             686 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27028upu ultra-conserved element locus uce-5142,
            sequence.
ACCESSION   KCLA01001665
VERSION     KCLA01001665.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 686)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..686
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27028upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>686
                     /note="ultra-conserved element locus uce-5142"
BASE COUNT          218 a          128 c          121 g          219 t
ORIGIN      
        1 gctacgaata aattaaattg catgaaaaaa ggattaatat tctttttaca ggttaagagc
       61 ctttctcttg caataattat tcttttcttg ccacagattt gttttatttt gctacagcaa
      121 tacactatca caacttaaaa ttcgcattca cctaaagaag ctgtgacata cctaccaaaa
      181 gagacagact gcttaaccta aattgaccct tttttccttc tattctaata gatctttttt
      241 ctttttgtca ctcaaaatga gtgtctgatg tatgagcata aattgttaaa agcagtttta
      301 agtaaaggaa gagagagtga agtggagttt tctcacaaaa gccaacctca atttatgtca
      361 aagagggtta aaagaccttg ggattaaagc aataaacttg ctgctgtcaa agctaaaacc
      421 cgctaacaat ttagtgccaa acgcatgttg ttcaatatca tttcatatta tattatgtca
      481 caagtaggtg acagttccac atcagactga caaggctgat ttactctgaa gaattcatcg
      541 acgttttgca gagtcaaagc tgacttcatt ttgtttggat gcagggtggg aaatctctct
      601 tggcgcaact tggaatattt ggctgaataa tacagtcctt cttggactgc agaccataag
      661 cttttgaagc actcccagca cagcgg
//
LOCUS       KCLA01001666            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27043upu ultra-conserved element locus uce-497,
            sequence.
ACCESSION   KCLA01001666
VERSION     KCLA01001666.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27043upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-497"
BASE COUNT          338 a          199 c          196 g          272 t
ORIGIN      
        1 caggctctga ccctttccat gaggaaggac caacctaacc ctgcgcagca gcttcaggcc
       61 ctgcctcttc ctgctgctgg tagacaggga ggaggatgat gtgttagtgt ggccaatggc
      121 actgtcccat cccctgttgg ccgtcattcc ttctctgtca gtcacatagc tggaaaacga
      181 gagccccctt tgttttaccc caagctgcta acgaaaagaa gtgacaaaaa agacatgcgg
      241 tattttatac taaaagaata aagattttta ttaagcactg taagttgcat tcaatagcct
      301 tcaaatacac cacaccacaa tccatctaca accaaccaaa cccaacagta gttcattctt
      361 gcacaatcca tgagttgggg cagaactccc ttcaacttac attaagatac ctacttagct
      421 cttgcgggca gggaatgggg aagaacacct catttctgat cactaatgtg tgatgaagag
      481 catcaggaga attatatgaa aacgaatata aagaaatgat tctgattttg aagtacatta
      541 agtttggaaa cactaacaaa aacatcaaaa tgatacaggt agagttgctt atactaaatc
      601 cttgatggga aagttctgaa gaacaagcca tttggttcct gctacagaag gggggttatt
      661 ttctttttct gaagatcaaa gctttttttt ttctccacag aatttcatat ctgctaatat
      721 gaaggcataa aacagcaaca gagaacaaga atgcatacag caatgagtac accagggtaa
      781 cgttgatatt caaaacggct agataatctt ttttcttcaa gagtttgaga ataaatgcaa
      841 cagaggtcaa taatcacaaa attttaaggt tagagcaaga tcagtcaatg actaaacata
      901 gttaacatct tttataggac tagtactgat tattagcttt ctgttttgca aatgggcaca
      961 gtacttgtaa gaatggaaga aagaggacaa gaacatgcat aatat
//
LOCUS       KCLA01001667             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27058upu ultra-conserved element locus uce-3330,
            sequence.
ACCESSION   KCLA01001667
VERSION     KCLA01001667.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27058upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-3330"
BASE COUNT          210 a          130 c          117 g          192 t
ORIGIN      
        1 aatatttccc agtaagctgt cctgtacctg tgagactgct ttagctacta agaaatggat
       61 gctgacgcta gaggactcag cattcacagt gcatgttttt gtactgtctg cctaattctc
      121 agctacttta tttatggact ttaactggtg aaaaaaaaat aaatgattca aaaaaagtat
      181 cagcttagaa aactgacaaa tatgcagcaa aagatcatgg aaacatgcag tggttttgct
      241 aaaattaacg acagtaaata gaaaaatgta actgatgtat taccagtttg tgccataaat
      301 ttagcagcat cagcttgttc ctgagggacc cttttctcat gaacagatcg aggtcgctga
      361 cttttaattg tatgatctcc catcattcca aattctaaag acagaataaa ggtttatgaa
      421 agcttgtgtg tagacatttc tcaaaagtca catactgtct catgcaatat gttcctccac
      481 acacccggaa atagctgtta gctcaggcaa gtgatcacgg cagttcacat caacttaact
      541 tcactacact cagctgttaa taaatacttg catttgtgtc tgcacgtttg caaacaccgt
      601 tatgaaccaa cattcagtgt agcgacacac agtgtaaatc agctgtatg
//
LOCUS       KCLA01001668            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27074upu ultra-conserved element locus uce-3436,
            sequence.
ACCESSION   KCLA01001668
VERSION     KCLA01001668.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27074upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-3436"
BASE COUNT          310 a          187 c          187 g          319 t
ORIGIN      
        1 gttgaattgt ctaatattat gttaaactac agatcgtgct gagggacaga tgaaagatgc
       61 caaagcaagt acttcagtgc tcagaatttc ataggtcctc gtttcatacc atttcttcag
      121 cttatgcggg ttattaagag cagctcgtct acttagatct gctagaaaaa gaccataaga
      181 gttgcagcaa tgagataaag atggattggc cacttttaag tcatatttcc tttcttgtgt
      241 aaatttagca gagactttta tcattacttt tggagagtct ttggggagac tggagttttt
      301 tcttgttttt ttgtttccat tgataccaat ataccggccc tgggatactt tgggaatatc
      361 atgtcaccat atttgagcat gggcactgga caatagcaag taccaataac tgccctgttt
      421 gatcttctgc agttctcagt ctttctaaca gcaataatca ggcagaagga tgaaaagact
      481 gattttcagg gaattagcat gataagcaag aacacaaaat caatcccaat ccttgtgagg
      541 ccgcctctga ttgctttgaa ctgtcaaaaa atggcagaat caaatcgaaa gtgcttgagg
      601 ttacgggagt gatttgttca agaagagatc gctagagcaa ttgacacagc tcttgagaca
      661 ataattgggt tatcaaagag aaaacagttc aagtaccaca ggggtgaagg cttatttgca
      721 ttggattttc atacagccag gcacacctcg atttgaaagc ctccattttt atatacttga
      781 agattaaaag gactcaaaat tgcatcatta tcatttggaa ctttggttct tagcacatta
      841 ctttttattt aaccagcaaa actttgaaac catgcttttt atgaagtaca ttcgaattaa
      901 aaattcagga cactgttaaa atcagattct cccaattttt atttaatcat cccatttttc
      961 atcaccctct aaagaagtct ctctacatca cttcttaaaa cct
//
LOCUS       KCLA01001669            1039 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27090upu ultra-conserved element locus uce-2991,
            sequence.
ACCESSION   KCLA01001669
VERSION     KCLA01001669.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27090upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1039
                     /note="ultra-conserved element locus uce-2991"
BASE COUNT          291 a          191 c          201 g          356 t
ORIGIN      
        1 tagtggaaaa gttagagaat tgctattcta atgtagagaa agattattaa atggcttagt
       61 gatttcttct cagctggatt ggctctgtct ttttcatcat aagaagagtg ttgaacaaca
      121 ctggagataa ctcatgtgca catttactcc aagatattga ttttagatca gcatttacac
      181 aattagtaag gagcaaaatg tggccatgga ggcaactcac tttgtttcca tgactcttgc
      241 aggtgtatta gtgagttcca tgtgatattg aactgccttt tctactcaac ttttaactgc
      301 atttctgact agcactgagc tttcagactg gaatcctcct gacactttca aagtggtttt
      361 gaccgtgttc aactcctttc cctgtagggg gttaatctca taaagatttc agccacacaa
      421 gtactagtgt caggggtata atgatcactt tgaagtttgt ttgctttcca gtgcatttaa
      481 acactttaag tgttccagaa ataggattag atgccccagt gaattcattt catttacccc
      541 cagcagtggt tttccaatac tatatggtgt ttacatggta tcaatttagt ggcatgctga
      601 tttccaagat tcttcccctc ccctatcaat tttctacctc ttgatcctac ctgaaaattg
      661 ctgtgatatt gggcaaatga taccagaaaa aggaatattt ggattctggc atcttcttgt
      721 ttaataccgc tctgggattt tcttctgtgg agttcttggt aaaataaaat ttagtgacaa
      781 agtcaaccat tagaataaac aggtgtttga attctgagaa aggtggtatg tttaaatgtg
      841 aaaagcttat tccttcctta agcagacgtg ctttgcttaa gtaatgattc acactttttc
      901 gtcctttctg aattacaggc tttgcatatt agaatgttat atgggccttt ggctaagaaa
      961 ccattaccac tgggcacaca gaattggctt gcttttccct aacagcgtaa gtgtgttaca
     1021 caggaaaaga gaaatactt
//
LOCUS       KCLA01001670             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27106upu ultra-conserved element locus uce-3547,
            sequence.
ACCESSION   KCLA01001670
VERSION     KCLA01001670.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27106upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-3547"
BASE COUNT          236 a          180 c          154 g          213 t
ORIGIN      
        1 gggtttcagt aggcggtttt aagatgggcc acatccccag tctgttgggt ttgatcatct
       61 ctacgtttca tcaaggtagc cttgggcaac agtccaataa ttgctagggc tttctaaatg
      121 ccagcatgaa aacaaactcc catcaaaatt gagtggctcc accaagttca aaaggtgaaa
      181 taaatgaatc tttacacatt ataagaacaa aatcaacatt cttctgtggc ataaagtgcc
      241 tgaaaaacta gcaagtaaaa gcaggtgtga tgtgctccct gtcagctaac gacactgata
      301 agcttgccat gcctggttct gcttcatttc aaacagactg ctggaaaaaa ggaggaaaag
      361 ccagagcaga aataattgct ggagcttcga gttagctgag agagcctgca ggctaagatc
      421 aacgcgactg atttcatcct cttcctttta tttctataac cttaaacgtt ctgctattat
      481 aaaagtcatc atgtcagctt tcccccaagc cttagcagcg gcctatttta aaattgtatc
      541 aattggtaaa gctctggctg gagtattttc atcttgattt atgggttttc agctttaaag
      601 atgaagaaaa ctccactgac ctgatctaag catgtgtgtt ccctgcatat gtttataatc
      661 agaccctaca gaaacaaggc acgctcgggg aagctttaca attacaggga gagcagcaaa
      721 ttgcaagtga acgctcttta tcctgaattc atctccaaca acaccacacc cccccacccc
      781 acc
//
LOCUS       KCLA01001671             881 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27122upu ultra-conserved element locus uce-5287,
            sequence.
ACCESSION   KCLA01001671
VERSION     KCLA01001671.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>881
                     /note="ultra-conserved element locus uce-5287"
BASE COUNT          254 a          157 c          155 g          315 t
ORIGIN      
        1 aacagcttct tagtgtttac ttataacatt tctacattta tttcaagttt tctcccccaa
       61 attacactgc ttttcctcta aaaattgcca ttattctttg gctattcttt tattgcaaca
      121 ttattcactc gttttctggt tagaaaaaat ttgctggaat gaaatgatct ttcagaacag
      181 tgtacctttt tatgtttcca atattactaa ccactcaggg tgtgatcttg atgaaatcgg
      241 aggattttct attataaagg agtggaaata cttagcttct ctctcccttc tcagaaaaca
      301 aaccacatcc tggaaaaaga aatgttttac acagaattta tacatgataa gaaattcatt
      361 ccacaagtgg agtaagacct ttaaaagacc tttatctacc tcacagaata aatttgatat
      421 gccttacaaa ccattttgtg aactcttcct ctcagtgaat gcagatgaac ctctctttcc
      481 gaagtgctag taccacagtt tccattccaa tgatgaaatt gggtatggag ggggacaatt
      541 ttattgtcat gcatttgtat atgattacac actagattgt aaaactttaa catttattta
      601 gcttcttcta ataagctttt caacatctaa taaatctggg tacctagaaa cgtctgtttg
      661 ctctggaaga ttattaatca ggattgggca tcctgctggt gggtctgctg agactgttta
      721 aagactgtgg ttagtacttg cagcgcctgt tacaagaggg ttattcttta gggaactttt
      781 gggttgcata gtttgcaagc actggatatc aagaggctga gctttatgta tgtaagctgt
      841 ttcactagtt tttctggaag ttttgttagc aaagtgtatc a
//
LOCUS       KCLA01001672             419 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27136upu ultra-conserved element locus uce-1234,
            sequence.
ACCESSION   KCLA01001672
VERSION     KCLA01001672.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 419)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..419
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27136upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>419
                     /note="ultra-conserved element locus uce-1234"
BASE COUNT          146 a           66 c           69 g          138 t
ORIGIN      
        1 aatgagatac cataaccaag cagtagaaga tgcatgtcag atggttctcc aataacatta
       61 gaaaaaaagc agctgatgta tgggatattg aaggcagatt aagttgttaa tgtatattag
      121 tatattctta atttcctttt aattgaaaaa gacatattga ctttaattag aaccatttca
      181 caggaactgt caattagcac atgtcaaact agttaattca gaacagaatt cttttaatta
      241 gggtctgctt tcctttaact gtggggccaa tgaaatcagc ctttccttat caagatttta
      301 aatgtctcta agacatacaa tacaaatgta gtctcttatc tattattaga agcccatatg
      361 gataacatta aaatgatgat gctggcattg ttcatgcagc acaaatcaga gtttccttt
//
LOCUS       KCLA01001673             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27151upu ultra-conserved element locus uce-5116,
            sequence.
ACCESSION   KCLA01001673
VERSION     KCLA01001673.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27151upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-5116"
BASE COUNT          198 a          111 c          138 g          174 t
ORIGIN      
        1 aataaatggt atagcaaaac aatggatata ttttctagca atgtgcagat gaagtaataa
       61 ggcatgtgtg tgtgtgttta aatataagtt ttcctaagga ctcaaacact ttcttggaga
      121 ttgtagggaa aggaataaaa aatgtgagct ctcctgaagt ctctacatct ttgagtagca
      181 gtagaagcag caaataacat agctgcacag ctaggcagca agcagaaggt gagttttgta
      241 tgtagaaatc agttagagga ccatgaattt caggcaaaag ttagtgataa cttgctagtg
      301 aaatagcaag tgagcagtga aaatctttgg acataaatgt ggttccaaag tgagtctcag
      361 ccttcagtag ccaaaaataa accagttctt ggctgaaaga cataagtgct attgtgaaat
      421 tgatatccct ccttggctta ttcccagaca atatgttgcc tttctggggg ctgatcaatg
      481 tgattgatgt gatgtgtgaa atccaggagg gagctcccct ttaatcaaac ccactgtcct
      541 ccactgatag gcagctgtgg actaacatgt tcttccgcct cactccctct gattcccctt
      601 agaaactggt aaatacaaaa g
//
LOCUS       KCLA01001674             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27167upu ultra-conserved element locus uce-4970,
            sequence.
ACCESSION   KCLA01001674
VERSION     KCLA01001674.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27167upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-4970"
BASE COUNT          205 a          117 c          133 g          212 t
ORIGIN      
        1 gagcaaaggg tagaaaactg ggcagccttg ctgttacttg ttgttagtgg tgattcagtc
       61 tcaggtattt ttatgcattc tgaaaaaagc catctcagag gaaaaaagca gcaaggtgta
      121 acaagaacgc gaaggttaga atcaaggctc gtgttttatg agccatttat acaatggtca
      181 ccatctcttt tacccagcaa gactgcttag ataagggaat attgtttggc actagctcca
      241 gtgttatttg tgataatgaa cacaaacccc atctgtaatg acaacatgat gtttctttct
      301 gtagaatttc tttcctacat ttgaatcaaa cattgatgaa agctctgctg ccagcagctg
      361 ttcagagaca atttaattcc agctgtgata attcaccgtg tcagacattg gctgttatat
      421 gttgatacaa cagttctcca gatttgcatt tttatcaaaa ggaacaaatg ttttgaacat
      481 ttcagtgcag atggcattta aacatgcaca cagttgtttt ttgaaatgtg taagatataa
      541 atatttgaaa agctaataac ttgaaagaat gtgattggtg aaataaatcc caccaatatt
      601 ataccagctt ttggtcagat cagcaccttt ctgcaatcat gagttatgtg ctgcccaggc
      661 tgtttgt
//
LOCUS       KCLA01001675             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27183upu ultra-conserved element locus uce-4500,
            sequence.
ACCESSION   KCLA01001675
VERSION     KCLA01001675.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27183upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-4500"
BASE COUNT          153 a           79 c           90 g          162 t
ORIGIN      
        1 tattaaattc tgatatcacc gtccatcaca gtaaaacacg ctaatacttg ctgcagagtt
       61 agtaatcctg gtgcttatgc agtgttatgt ggtaaggctc ctgaccagca tcagcgtgga
      121 gattcggtta ttatgtggaa gagttataat aagaaatatg actgcaaaag caaagcagtc
      181 agttgaaatt ggtctataat taaatgctta gaaaattctg tgcttagctc attttaaaat
      241 caagtgcttc tttgtagcaa tttcctttct ttaattacaa tttcctgtct agtttgacat
      301 ttacaatgca atcttggggg acatgtttgt gatttattat tcttgctcct atcaggatat
      361 cactcggcag aaatgagttt ataaaataag agctcaaatg attatggcct ttgaccaata
      421 aagctggctc ataatttcag gcctgagaaa agattaacat ttttgacaat caaatgcaga
      481 atta
//
LOCUS       KCLA01001676            1006 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27199upu ultra-conserved element locus uce-1110,
            sequence.
ACCESSION   KCLA01001676
VERSION     KCLA01001676.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1006
                     /note="ultra-conserved element locus uce-1110"
BASE COUNT          340 a          172 c          178 g          316 t
ORIGIN      
        1 atctaatttg tatgctactt acacagtcca agagatggaa agttgtatgt gtgagcattt
       61 aacagcgaag gagtgcttaa accagaagcc ctttattttt ccatactgga cagatgtaag
      121 gtgatgtgat ggcagttgct caacaatatc taacaaataa ttctgagtcc ttttgacata
      181 aagtagtata tttaaagtaa ggtgtcttag tgaggttttc actttaaata gaataagggt
      241 taaatgataa cttgacttat cttctaaatg acaaaaaata aagaaattgc aagacctttt
      301 cacacattag atatgtattg tcatttatca tctagatatc aggctagcag tgcgaagtaa
      361 taaaacatat catcgaaaaa tgtgctatag gtctgaatca ctctttcatt ccacctccca
      421 gctaactgta gtattaaatc aaacaagcag aacatttcct taggcagcca ttgcctttta
      481 atttcctgaa gaaccttaaa atatcattca ttacaagtac tacacatatt tggtttttaa
      541 aagtctcata aatcaatagc aggctgactg taataattat tacaagttag tgcataattt
      601 tcgtgctgaa ggctgcatgc agaactttag catatgcaaa cgaggcaatt caaactgtgt
      661 atagatatta atatgaagaa gcaggtaacg aggtgcaggc tatgaattat gcatcaagag
      721 tggctgatct tcaatgagga aaatgaattc agcatgtaat ctaattagtg atggaagtct
      781 attacatcta actgcaaaag caaccgtcct tgaaacaaat ttatttacag tccatgttac
      841 cacttgaaac aactttgaaa tgatgtgtaa gacaacagct taattgtaaa attttttttg
      901 tttgtttgtt tcagttctag acctggaagg cctcctaaga ggactcaaag tgtcacctct
      961 ccggagaatt ctcatatcat gccacattct gtcccaggcc taatgt
//
LOCUS       KCLA01001677             341 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27214upu ultra-conserved element locus uce-3596,
            sequence.
ACCESSION   KCLA01001677
VERSION     KCLA01001677.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 341)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..341
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>341
                     /note="ultra-conserved element locus uce-3596"
BASE COUNT          103 a           87 c           76 g           75 t
ORIGIN      
        1 gcctgagcgc tcacattttc tgctgtaaaa tcacacagcg tgtaccccga tgccaccacc
       61 agcagcatcc acggaaaagc cctgggacca gcagcagatg catctctggg gctgaaagac
      121 acctcaggac cccgggatcc tgcttcccgc agtcccaggt cgcattccct agttaagcac
      181 catcaatatc aatacttaat ggtattctct gagctcaggc agggaagaaa atagggttgt
      241 tatctatcaa agcacatttt agtttttgac aagtaaaaag cagcgtgggg aatgcagtga
      301 gtctgaaatg aaagcctaaa agaaaactca tataacatct g
//
LOCUS       KCLA01001678             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27230upu ultra-conserved element locus uce-1040,
            sequence.
ACCESSION   KCLA01001678
VERSION     KCLA01001678.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-1040"
BASE COUNT          160 a          121 c          156 g          141 t
ORIGIN      
        1 gaggaagatg ttgtcgcttt aaatactaac agttggcaga agttcctcct caccgcgcgg
       61 cgaaggaaaa tcaagggaaa gaaggaggag cagacggggt tggaattcga ttcggccgag
      121 aaggagcttc gccccccgaa gcgtaagaag cgaaggcgcg ctcgtctcgc accggacttt
      181 gttactggac cggtgaaata tgtaatgaaa tccaaggagg aaactggaaa accagccaaa
      241 ttggagcagc aaagtggtta ataggatcat tagcctcctc gctgcatttt tttggacatt
      301 gtgtgcctgt tccgtagtcc tcgagagcag attgcgggaa caggctgaca gttacccgct
      361 aactcagcag tgctgggtgc aaactgccat cttcctgtgg atttacagct gccacttctg
      421 ctacttcaat tagttctata gcacacagat gttgcttaaa tgttgctgct aatgatactg
      481 caataagcgt aagattcatg ccatattttg aggcacgtaa atttctcaag tggcacaatt
      541 aaagtggaaa tattaggtgg ggagaacttg gcagtggc
//
LOCUS       KCLA01001679             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27246upu ultra-conserved element locus uce-300,
            sequence.
ACCESSION   KCLA01001679
VERSION     KCLA01001679.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27246upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-300"
BASE COUNT          205 a          125 c          128 g          177 t
ORIGIN      
        1 ctaatgatct agaagctagc tggaattctg agacaaatac taaacataat caatatatat
       61 gtgtatataa aaagaagaga ttattttttt ccttaaaaaa aggaaaaaaa aaggcaatga
      121 aaatttatga ccttaacatt ccttcagggt caagcaattt atcaaattct ctcactttct
      181 ggtttcaatt acacagctat tgtggaagga acttatttta gcaggttcat ttgcctcagt
      241 agggaataca ggactttggc ctaatgcttc acctttagtg caggccattt gggccttaga
      301 acaaatacca atcatcactc tttgggaaaa cccctaaaat ctgcatcgcc gtggcctatt
      361 ggaatggggt ttctgtcaag gtaaacggtt gtcggcaatg actgtggtag agtggcgata
      421 aatcccattt tattgctgaa aaattccagc ttctctccat gcctgacagc tctccacatt
      481 ctcgtaccca tttgggcaat ttctgtacta tgtccatctg gttacctctc aacctgccag
      541 tgtctgatcc agaaaaagtg caggtcaaaa caggggaaaa gaaaccaagg tgatggacaa
      601 aacagagaga gggtgattga gagacagagc caaaa
//
LOCUS       KCLA01001680             966 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27261upu ultra-conserved element locus uce-2248,
            sequence.
ACCESSION   KCLA01001680
VERSION     KCLA01001680.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27261upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>966
                     /note="ultra-conserved element locus uce-2248"
BASE COUNT          318 a          155 c          176 g          317 t
ORIGIN      
        1 taagtgctag tcaaaggtac agttccaact cagtctgatt aatattctcc tataaaataa
       61 agaccagaga ataaagcatt aattttatga ctattttttc ccactgcttg gtttttcatg
      121 agttggactt ccttccaggc taattaacca cagaacattt tacaagtaat ccatgtgcgg
      181 aaacagtaaa agatgaattg cacttatgaa gtaatcgaca aagggtatat tgggcctttt
      241 aagcgttgat attgtgcatc ttaatacagg aagaaaggat cctttgtact gcagtttgat
      301 aggtcattag ttaattctca gaactctgca caatataata atgactcaag gctaaaataa
      361 acccttctgg attggggtgg ggaaccctgc ctcaaaacat ctccagagaa aacacttaat
      421 gtttgtgtct tggcattatc aaaatacacc ctgtgttatc ttagattaat tccctggcta
      481 ttttcttttc ttttgacagc aaagtcagag ctgacaaacc aaggcagttc tcaaggaaat
      541 tcaattactg aaatgtctga cagcttgctt tgctgcttct aactaaagtt ttgaaagtta
      601 catgctgcat gtataatatg gttttcacta caaaggaata gatttgcatt ttctaggggg
      661 aaaatgattt taaagctgta ggagtctaat gataaaagat aaaaaatgaa atgctgaagt
      721 tcctattttg caaagaagtg aagtaagttg agtggctgcc acatgaaact aggaaaacac
      781 tgtgttttct taaaagcaga atttatttgt ctttcctcat aaataaggga atgccagtca
      841 ttctgaatac taactgcata tatcattttc taattagtct atataatgca agatacaaag
      901 gtttataaag cttcatttga gctctgtgtt tgtcacttaa ttatttttag agatgtgaaa
      961 atgatg
//
LOCUS       KCLA01001681             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27277upu ultra-conserved element locus uce-7950,
            sequence.
ACCESSION   KCLA01001681
VERSION     KCLA01001681.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27277upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-7950"
BASE COUNT           89 a           98 c          135 g          156 t
ORIGIN      
        1 tctgggccga ttggatgccg aggggtcgct ggcattgtcg ataaatgatt gcgctttcgg
       61 gggagagccg atgtagctgg agctcgactg gtgctactgc actcgagtta ctcctgcggg
      121 agtgtaaagc ctggcggggc ggttgagtcc tctgttgtgg cgtgctgctc tgacttgtct
      181 gcttgctttt gaaatgctgt gttttctctc cagagcctct tgtaaccatg ttgtgtattc
      241 tgttttataa caagtggata gactttacag ttatgtgctg tgcggcctgt caatcagttc
      301 agtctgacag ctgtcaatca ctgacacgca aatgttatgg gattccctag tgaggaaaga
      361 attggtatct ctgtgtggtg actttagcct cccgcagctc cggtacttta cgtttttata
      421 gtttttttcc ttgtcaagtg atgagagttg tagctgccat gtgttaactg ccaaagga
//
LOCUS       KCLA01001682            1036 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27293upu ultra-conserved element locus uce-4600,
            sequence.
ACCESSION   KCLA01001682
VERSION     KCLA01001682.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27293upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1036
                     /note="ultra-conserved element locus uce-4600"
BASE COUNT          277 a          224 c          225 g          310 t
ORIGIN      
        1 ctggtaagta aagagatggt attcatgcag gttcagatat tagctttgat ggcagcacct
       61 caaataaaac tagagtgggg aaaattgtgt actacaagaa tgtctccaga tacgctccaa
      121 acatgctttt tcttaagtat gggaaagtaa aaagtatatt tagaaaggct gaatggcact
      181 tacctctcaa gaagtgctgg taagaaggaa gtgactcaaa tatgctgttt gaagccattg
      241 tttcctcttt aaaagtcact ctctctttcc agtgcaggaa tatattcttc taccttaggg
      301 agtgaaaaat gaagaccggt cattgctgct accctcctcc cagccatcac tctctgtttt
      361 atcctgatgc ctcaggagca gcagaaaatg gactataagt ttcttttgct aaaaggactc
      421 tgaaattgct tcttaaaaag aaaaaaaaat agcggatcgg ttgtggttga tgatgcttac
      481 cactctacga aactctgtgg tttgcagtca aaacgattcg ccctgcctgc tgaccaatat
      541 cccggacccg ctcttgtgtg actgcctctg tacccaactt gtggttctgt ggttgtttat
      601 gaggcccaaa gaagtgtttc acacaaccaa aattacaaat ttaactgttc ccctttccag
      661 aggctgcctc cattggtccc tgtgcatcac atggcatcag tgatgtcgac tttctttttc
      721 tatttacttt tctgaagtca tgccctaccc actccacctg ccctccccgg ggctgcgcga
      781 ggcagcgata gagtctgctg agggagggaa aagaggaatg actcaccatc cccaatgcta
      841 caaatggtct tgctgagtta gtttgactct gcttgttttg gtggttgtgg tttttggaac
      901 tactgattat tttgatagag atttcattgc tgcttattca atagtaattc aaactgggta
      961 tttatctgct gctgaggcag gatgtgtaac tcatcctgta aaacactagg aatcagctgt
     1021 agggaagacc accagc
//
LOCUS       KCLA01001683             240 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27323upu ultra-conserved element locus uce-6734,
            sequence.
ACCESSION   KCLA01001683
VERSION     KCLA01001683.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 240)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 240)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27323upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>240
                     /note="ultra-conserved element locus uce-6734"
BASE COUNT           44 a           60 c           72 g           64 t
ORIGIN      
        1 cgggctcgcc cgccctgcgc gggagcgggg tccctgccgg gagccgccgc gcctggcgca
       61 ccgagggaag cgttgatgca tcgctgtgga aattcattgt gtgactttct gggtatttac
      121 tgagtttcag accgagatgc agctcttgaa agctctatgg gcactagcgg gagcagcgat
      181 ctgctgtttt cttgtatttg tcatccactc acagtttctt aaagaaggta attatatctg
//
LOCUS       KCLA01001684            1027 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27369upu ultra-conserved element locus uce-2270,
            sequence.
ACCESSION   KCLA01001684
VERSION     KCLA01001684.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1027
                     /note="ultra-conserved element locus uce-2270"
BASE COUNT          308 a          227 c          255 g          237 t
ORIGIN      
        1 aagctggaac actgcagtat tttacaaaat cctgtgcaga gtgccagaca ggaagaaaaa
       61 aggagctccc agtgcaaacc tgacctgtga gcagtcccag ggagaaagtg caatcctcac
      121 cttcaggaag caaagctgaa gacccagctc tgaattttat gtaaagtgaa gtctcagtgt
      181 ggcactgctg gcaggaaaag gcagagctct ttgctctgaa aggcatcatc agaacaaagc
      241 gtttaaatga cctctccctt ctagaaacct gggaagtaga gggaactgct cccctgttca
      301 caaggtatta ggtgattttt ggttaagcgg cttctagtac tgttgctgtt cccatgggta
      361 gaagagatac aaatggcagc agagaaataa tatattaaaa ttgaagctaa aggagaatac
      421 ttacatggca cagacaggca tgtacatggg acacacacac tgtgcattta cctaatgatc
      481 catgagaagc tgatgtcccc aggaatgtgt tttctgattg gcttaagtgt ccctggggct
      541 gatggaggaa atgcgatgag aggctgaccg gtggagaagg agaggcagag tgaaaggagg
      601 cagagcttcc aagggacccg gggatattta caggagcaga actttgcagc aaactcccac
      661 ctggacaaag aacacacaga gaggatggct atgtatgacc atgaagcatg ggccagagca
      721 cagtgcagga gctcagagca gaaggtgtca gcttccctct ctccttccta agcccttcac
      781 gatttcctct gcttctcacc acgttccctc tcagccttcc agaggagcac tgaagctggt
      841 gtccgatgaa ctatgagggt taagactctc cagagttcaa aggactactc ttttattggc
      901 caaagcaaca aaaggttttg agcagagctc acttcctatc agactggagg atgaatttgg
      961 tacctgctaa aatactttgt aaagaaaaaa tcacttctaa accacatgcc tctgccttta
     1021 atacttc
//
LOCUS       KCLA01001685             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27385upu ultra-conserved element locus uce-1782,
            sequence.
ACCESSION   KCLA01001685
VERSION     KCLA01001685.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27385upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-1782"
BASE COUNT          152 a          103 c           69 g          130 t
ORIGIN      
        1 taaggcaaag gatgtgcgtc cttctcttta ccagcctttc acaggttcca gttagcctca
       61 aacaaaaaaa caagttgaaa attactccaa agctaaagca gtgacaattg tattcccatt
      121 gtatttcact taaatgcata tgtttaccgt atgttttaat aataattatt attaaacata
      181 gtaaaatact cccaaacttg gctcatggca tcattgtagt tctagtgaaa attatccgat
      241 gcctcatcaa tatgccactt cctcctcccc catcttttaa cagaagcagc ctccagtgaa
      301 ataatccaag ctgtgttcaa gaagttggca agtgggtcca attaaatgtg gttttagtgt
      361 attctggcat ttgcatatcg agtttgccaa gaagtaatgt tctaggaaaa aaaaagaaaa
      421 aaaaacccca caacccccct ccccaaaccc aacc
//
LOCUS       KCLA01001686             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27401upu ultra-conserved element locus uce-6485,
            sequence.
ACCESSION   KCLA01001686
VERSION     KCLA01001686.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27401upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-6485"
BASE COUNT          247 a          155 c          122 g          282 t
ORIGIN      
        1 aagaaaatta tcaagaggta tattcttgtg attgctgaaa ctgaaactgc aaagttcttt
       61 taaaacgaat tatgattcac tggatgagag ttacagaaag atttccccag aaccacctgt
      121 aaaactgcat tggtttttat caagtagctc ctgctgagcc cacctagttg atgaacattc
      181 ttatcaacta gcaaatataa atgacttatg gggataatat ttcagtatct aatgacattg
      241 atatatctcg gattctttta agatctgggt tattaaatat taaatatcaa agctgtaaat
      301 tattgtagta gctttataca actaaattaa attcaaacaa aacctcattt ccttaatcat
      361 taactgtaat cctccaggaa catatgctat taacttagct acaaatggca cagaaattgt
      421 atgacttcag ttacgttatt ttatataaaa ttctaatcca gggcagagtc ctccataaat
      481 ctcccacagg gattttaata cttctacaat catattagct ctttagagga gagctaatct
      541 ttttctactg ttttttcatt ctgatatgca tttccttcat acccttactg agctagagct
      601 agtaacttct atcacatgcc atgttttgaa agttatggct ttcctctctt gcacttgatt
      661 agcaagagcc aggctttcac ttatgccaga ttttttgttt gacatattga actgaaccct
      721 ttccatccat ttcagcatgc gtgctagctg ccacttgtga tctttctaag gctgtcagaa
      781 ttatccattg tttgcagcca agcatt
//
LOCUS       KCLA01001687             693 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27417upu ultra-conserved element locus uce-7682,
            sequence.
ACCESSION   KCLA01001687
VERSION     KCLA01001687.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 693)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..693
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27417upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>693
                     /note="ultra-conserved element locus uce-7682"
BASE COUNT          229 a          114 c          130 g          220 t
ORIGIN      
        1 ttttcccaca tggatccatt gtagttcaca aacttttccc atctatgagt aacttttacc
       61 gttaatttgt gttaaataat taatcctgga caactaagaa catttttgaa ccagtgataa
      121 tgacaaaaat aaatacttta agcaatgttt tcactggaat taaacagcag tctcaggaag
      181 aagggtgggt tctttctgct gtgggcccat ttgtcaaact gctattaaga attttcagtt
      241 attaaaaaaa aaatggagcg aacctttatt ttctccctct aatttattac gcttgattac
      301 gcagctggaa tgggaaggta gctgctgttt gtagttaaat aactcctcac aatttcttaa
      361 agaaatgatc ttcaaagctt taatgggtca gtggctcaag tacaaaggaa agattgattt
      421 tcatactccc actctttgtt cccaaagttt aaaacagaca cgttctggta aattagtttg
      481 tctatgttat taatggaaga acttattaaa ctcccataaa tacacggtgg tatctggctt
      541 aaaacacaga atgcatttgc tttgaaaaaa tacacggcta aaagtaaaca ggggcgcaat
      601 atttttattt gatttgagaa atgcctccaa aggcagaaag caagagaact ggggggttgc
      661 aaaatatatt aggtatgcgt aatgatggat ggc
//
LOCUS       KCLA01001688             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27433upu ultra-conserved element locus uce-3354,
            sequence.
ACCESSION   KCLA01001688
VERSION     KCLA01001688.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27433upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-3354"
BASE COUNT          225 a          202 c          233 g          134 t
ORIGIN      
        1 ccacaggcaa cgtccgctgc agaggtgttt agcggccccc tggcaacact gaacagcatg
       61 gagctctgcc cgcctgctcc tcacctccct gcgccagcag cctccccgga gctgcaagct
      121 aagccaggta cggagcgatc tcggctccct gaaggggaat ttagcgacgg caattatttt
      181 aagccctttt gtaatcgaat acaaaacttg ccaacgacat gaacacagcc cgcgagaacc
      241 aaggagcgaa gggtacccga gaagagcgag gggtgccgga cgagcaggcg cttctcgttt
      301 gattgagaga gagagaggaa aagaaaagca aaagaaagag aaagaaacta tttcggttac
      361 ctttctcaca tttctttttg gaagctgacg aaggaggagg aatcataggt aatttcatca
      421 actcagcacg atttgactca ttcagtaggt agtgggactt ataggcatag gaactgaaca
      481 gggggtctga atggtcctgc actaccagcc ctatacggaa caaacagaaa gaggtgagtt
      541 gcactgaaag tacccatgat tccgaaaagg agagaaagca ccccaccaaa ccacagctcc
      601 aacgcacgcc tgcgtcagcg ggaggaccga agggggggga gcgaggctga cagagagatc
      661 cctcgctaag gaagagctga agaccggagg gagaacccgt gagggaggag cggaattccc
      721 ctcctgctct ccccctccgc tcgtgcggtt ctgagaagca caagaaaggc aacgggtgtt
      781 gaggcgggga ggcc
//
LOCUS       KCLA01001689             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27449upu ultra-conserved element locus uce-6254,
            sequence.
ACCESSION   KCLA01001689
VERSION     KCLA01001689.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-6254"
BASE COUNT          238 a          158 c          138 g          237 t
ORIGIN      
        1 aaaatacctt caactctagc agattcattc agaattctaa aatgcatact gctgaaatta
       61 ctctccatgc tatgggaaaa caataacaac gttaagcaac atcgtcttat atgttcagat
      121 gataaaaaga tgcaggactt catccacaga gaatataaaa acagcttttt gatgaatcaa
      181 aatatgtcaa ttgtctatta gaaagaaaca attaaaacta gataatggtt atgaacagct
      241 ctgacctgct gagaacctga aggctttgct tcactcagga ctccacttct tctgactgcg
      301 ggtcagccct acgcaaacaa agccttaaca gaaatgttac agaggaaata atagccattt
      361 ccaatgataa tacacaattt tagcacccac gcttggctga tttaggtggt cggctaacat
      421 gtcaaacagc ctgccttagt taggtgagcc tttaatgggt aactggcaga ctctggcagc
      481 cttatttctg ttttagattt ggtttgtcat tggatatcca ttacctgcca ttcatctttg
      541 atctctttgg acaggcctga tcaaaagatg tcatttgacc tactccactt ggcagaaact
      601 tgtatgactc tcataaaggg ggcaccccag ctataaataa aatgacatta ttatttttct
      661 gtcctatcat gtagaagaga caattatgat aatgcagtgt ctgtcacttg gagcccagca
      721 aattgctagc tctcatgcaa ctgtttagct ttcttatttg ttttttgtct g
//
LOCUS       KCLA01001690             518 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27463upu ultra-conserved element locus uce-2856,
            sequence.
ACCESSION   KCLA01001690
VERSION     KCLA01001690.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 518)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..518
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>518
                     /note="ultra-conserved element locus uce-2856"
BASE COUNT          173 a           95 c           79 g          171 t
ORIGIN      
        1 gactacataa ctattcattt acacttaatg agtttattcc accaggtata ggacaaattc
       61 taaacaaata atgccactga atcataccca tcaataaatt tgagttctaa accgattctg
      121 ggtaacaaag gtaatgataa ggagagagaa agaaagactc cctccaatta atgaaaatgc
      181 cctttgtatt ttctaatagc tccaacatta atttaaaaat ggctttctct gcaataattt
      241 acagacaagc acttcataat ggagaaacaa ttcaaattta tgtgcactca tatgctgatg
      301 atctgattaa cttattaaat tcttgttgat tctacattcc agatgaagta taccattttt
      361 catgggtttc atacactgta gtctgaagtt ctcacattat caggcttcag ttgctagtga
      421 aggtcttttc tctgggtcgt cctctgatgc aaagtagaca gaaccaagat cccaaggatt
      481 gatttaattt gtctcttccc attaattttg aagatata
//
LOCUS       KCLA01001691             804 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27477upu ultra-conserved element locus uce-1614,
            sequence.
ACCESSION   KCLA01001691
VERSION     KCLA01001691.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 804)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..804
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>804
                     /note="ultra-conserved element locus uce-1614"
BASE COUNT          216 a          206 c          165 g          217 t
ORIGIN      
        1 gctgtggcag ggggattgga ctggctgatc tttccaggtc cctaatgatt ctatgatttt
       61 attatttatt cttttcagta aatattccct ggggcaaaga accccccaga acgtctcctg
      121 gtactaaacc ttgaagctct ccgataccac agcattatca aggcgttcgt acaactctga
      181 attatttatc caccaatctt cacacaactt ccccatcgcc gacgattttg cctgtttgat
      241 gttccatctc ctcaagtggc taaagaggct ataaagcagc ccagcactga cgcctgccac
      301 cgccgttcca ttagcagtaa agacctctct attcaaactg ctcactaaat cctccgagag
      361 cccggggact gtttcatgct tgaaagcaac tgttaagaat ttgacaacaa ccaaactgtt
      421 cctatttaat ccttctccca aggtaaaaag aattataggt aaacatatgc cttcattatt
      481 tgctttgctg cgtttcaata ctcaatccca cacaaaattg ccagccaagg gtttaaagca
      541 atctctgctg tatttcagag cctttgcagc atggaaagag cttaataagg gctacagagt
      601 cggggagcaa gcaacctgct ttctacgagg cacccaagag gttctgcaaa gggagctgcg
      661 ctcacgcgag ggatggggat ctctttccca ggttgttctt cggggtgagc caggacagct
      721 gttgacccgc tcaacctgcc cccaagaatc tgtgttttta attacaagac acaaaagcag
      781 aggttaacaa cggtagtctt gcta
//
LOCUS       KCLA01001692            1100 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27493upu ultra-conserved element locus uce-3882,
            sequence.
ACCESSION   KCLA01001692
VERSION     KCLA01001692.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1100)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1100)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1100
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1100
                     /note="ultra-conserved element locus uce-3882"
BASE COUNT          306 a          211 c          284 g          299 t
ORIGIN      
        1 ctgctcttta acaatcccaa gtgtgagtga ggtacgtggt ccgggacctc cgagtacaag
       61 cctcacagtc aggattgatc cgtcttatct tgagaaaggg ggaaaggact tcatagagat
      121 cttattgtga aggccagagg tatgcaggag ccaaaggcat gatgacttta ggatatgagg
      181 cgtttctttt tgtcatttaa aacgctgtgt gtctctgtca agaggaaata ttacactagg
      241 gtttaaacca ggaaaggtca taggttatgt gttttcagtg agctgtaact gatggtctga
      301 tctgcttaga ggtaggatta acctccctct ctctcagaaa ggacttgcag agaattgttt
      361 gcttgggttt ctaatcttat tttaccccaa atgccatgtg cccttattgg tggcagagga
      421 gattcttgtg gtagtggaat cagtgaaaag ctggtagatc acacaagaag cctctgaatg
      481 aaggcagaat tgaaactggg aaataaagaa aacagcaggc aggtcaccct ctcaggaaaa
      541 caacattcat tctcagtcat gcacatccta acacttttga cggcaattta tcatggaaga
      601 ctgggttcac cgcaagggct aacgcatgtc ataggttaaa tcagaaaagg caatgctgaa
      661 agggaacttc aaagtcctta atacacagag ttaaatatgt tgggaaaagc ttacgatgtt
      721 tgttataaag ctaggagtaa acagcgcgct ggaggagttt gggcaaaacc tctgtggttg
      781 gttggcttct ttaaggaaca attagtgtct ttgctggctc tggaggacac taccctgact
      841 tgcagaaagt tgtggagggt gagctaacag gccgtctcta attgtgattg ctgtgggttg
      901 ataaacagaa ttggatctgt ctaagttccc tttttccaca ggagacgtga tcccgcttgg
      961 tgcttgatgc ttttagttca cacctaagtc tgagcaagcg gtgagatcca tgcactctcc
     1021 tgaaccccca gtaagactgt gtgtgccttc agggctggga aaattctgaa gcaagggaaa
     1081 ggcaactcac cctgactgag
//
LOCUS       KCLA01001693             639 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27508upu ultra-conserved element locus uce-2457,
            sequence.
ACCESSION   KCLA01001693
VERSION     KCLA01001693.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 639)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..639
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>639
                     /note="ultra-conserved element locus uce-2457"
BASE COUNT          214 a          133 c          120 g          172 t
ORIGIN      
        1 atgcaagcag taccaaaaag cacattaaat gataaaccat ggaagtggat ttccattact
       61 ctgtaaaagc taaggaggcc aggagttaac tgaagcaagc agatttaaaa aaaaacaaaa
      121 atgaagcaag gaaggtacca tagctacttt cttgaaaaca aaaccaatct tttcattcct
      181 gccatttgtt agaattcttc ctccaggcaa gctggacagc tgcactagta ggttttttag
      241 tcatgggttg taagccccac ctggctagat ttgtttagca gacagctggc agaatgaaat
      301 aaaaagaaca gggacataca aactgcttcc aaaacaaaaa gctgaaagaa tactttctgg
      361 atgtgttagc ttgtgctgag tttatgtggt gtatgtttgg gggagactct tcccttcatt
      421 tttatcatcc cccatctctc tgcaccccaa aagtattaca aatgcaaagt gagacggcag
      481 gctgcattaa acagatcaaa aaggaaggga aaagccccat ctcagcctat cattttgcac
      541 acgtgcacac atatatgaat gacacacaca gtctccctca attatggttt acaattcccc
      601 aagactgaca ttggttttaa attaacttct cttcttatt
//
LOCUS       KCLA01001694            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27523upu ultra-conserved element locus uce-6196,
            sequence.
ACCESSION   KCLA01001694
VERSION     KCLA01001694.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27523upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-6196"
BASE COUNT          337 a          187 c          171 g          320 t
ORIGIN      
        1 ggccttgcga caaaagtgag aagtgacaaa ttagaggagt tttacagtac taatgcttgt
       61 tattgcttct cacaaaatgt taccaagctt acaataatct ttacactttc agcaaaaatg
      121 tgaacagtat atttgaatat attaaaaaga attaaaaaaa catttcacaa aaaccatttg
      181 ttgccatatg aaagtcagtc agcaataaat gcccacacca gtatttaaca ttgttaaaag
      241 tataatgatt tgtactaata aattatgcaa caagagaggt aaacaaaata aaattacagt
      301 atagctctcc atgttcctcc agtgagcgtc cgcagctctc ggaagctccg tcttaggtga
      361 ctaattaaga aaccgctatt ttcagagcaa caaaaataaa agcttttatt tgttcatttg
      421 aatataaaac aggcgttatc acagatgtac aaagcgtact ggtggtttaa catacaagaa
      481 ggttgctgtc ctttgcacat aaaaatttct gtttgaaact gtgattggct gagttacatg
      541 actttctcta accagtcacc acactctatg aaataacgct gctaacattc aactgataaa
      601 agggacagtc ttcccttggg taaagtgtca agcaggatta aatatatata ataaacaagc
      661 accatgagga atctgctcct gtttgattag ttttgtgttt aaatgttctt tgtgtaccct
      721 ctctttttgt gcatgtgcat caagttgatt acatggtttt gtctgactcc aaaagcacaa
      781 ggtcacaaga caaacatttt atacattctc atgaatggtt tatctacagt acagtttcta
      841 atacagaaca atccttcttt attgctcagt ctgatggtgc ttaaatgttt ccttcctttt
      901 gcttgcacaa caaaaccaga aactgggctt attgtttctc ttaactcagg atttcacaac
      961 cacagatgac aggttgcaga agagagctgt tattaactgc gtttcatgac tgcat
//
LOCUS       KCLA01001695             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27539upu ultra-conserved element locus uce-106,
            sequence.
ACCESSION   KCLA01001695
VERSION     KCLA01001695.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27539upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-106"
BASE COUNT          274 a          198 c          204 g          212 t
ORIGIN      
        1 ggatggctcc gaaattttca tgtaccacac cagcagtatc tgacatgaaa acctgctaac
       61 ctatgacttt agcaataagc caatacatgt ttctgaatcc aagcaaaaac taagaagcag
      121 atttgcagac atgcacagag cacaaaatgg aaattcctag ccctgtatga aaccccacac
      181 caccactggc agaccttgtg tgaaatgagt actgtctctt taagcttgag gacctgctac
      241 acttaagcag tctgcagcca aagaaaagtt ctgaagttaa actctcagga gcaaacattt
      301 tctacttgtg aagtaaactc tgttgaaaga cagcagacta tggtcccacc agtaaaaaca
      361 ggaaagtttt cagccagtga cagctctgcc tacagacaaa aaaaaagtgt cacagactca
      421 ctttattaaa ccatatgctc attgccctgt gaagaaagca gggtcactaa ttagttcatt
      481 ctgtgaaaga agcccctcct gatcccgttg acttttgtcc ccctggttag ctcaagctat
      541 ttctgtcatg caacttgaaa atcactggag ggaagaagat cgccataaca accgctgaaa
      601 tgatcttgtg gaatgtgtct agtggcactg gaataacctg aatatgtgct ccagatgtgt
      661 cggctgtcac ggaaaaagta aacacatctg atggacaacg tatgactgga tggcctcatg
      721 gttgtctcca gagagttgag atggagggga gggaaaagaa agaaggcagg gaaatggagt
      781 caagggccag gcaagagtca ccctgtggac ctttgcagcc tgacaggctg agaggggcaa
      841 ggactgagtt tgattgtacc atttctgtcc ctcctctgag tggcctct
//
LOCUS       KCLA01001696             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27555upu ultra-conserved element locus uce-3835,
            sequence.
ACCESSION   KCLA01001696
VERSION     KCLA01001696.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-3835"
BASE COUNT          304 a          187 c          159 g          234 t
ORIGIN      
        1 taaaactcac taaaagaaag aatgaaaata aagggaagaa aaagcccatc aaacctaaga
       61 atttctgcct ctaaagagcg tagtcaatgc atttcattcc gaaatagaaa ggtagaagcc
      121 atcagctctc cacagctttc catttttgaa ttcttaacca tcaagacaca agctacagcc
      181 atctctcatc tcccagagtc acaccttcca cagcctctcg gtttcagagg gaacctcggg
      241 atgtcaccat cccccaaaag caaacagcgt gtatttcgat ttgcacaatc aactacggaa
      301 ctgaaatgat gagatctaaa aaacaattac tttattactt cttacaactt tttcactgta
      361 aaattcaact ccaaggtagt aattggcagg gacaaaatta tgtagcaatt agggcatgac
      421 agcaaaagca aacaagaact gaaaatgggt tcgacacttc tggtaacaag caggtaatta
      481 tcacagcagc ttgaaagggg cataatcaac caaactgaca tcatccctcc cacataataa
      541 aatgtgaaat ccctttacgt gcagtgtagc tcttacacac agctggtaaa cgctgctggt
      601 ctagtctcaa tgtctgtgtc tgcagagcag ctgaggttac atttgggacg gtttgatggt
      661 gggtaatttt atttatttat ttagaatgat aagaactgtt acgttttcca tccattctgg
      721 actgcaggca ctatctctgg gaaatggtat cagataaaaa tgccctctct tctctgaata
      781 tcagaaggca aagttctcag aatatataaa aaatctctaa aagggagtga ctgccattgt
      841 ctgcaagatg aaataggttt aatatcttca tataaacaca caaa
//
LOCUS       KCLA01001697             931 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27569upu ultra-conserved element locus uce-5405,
            sequence.
ACCESSION   KCLA01001697
VERSION     KCLA01001697.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 931)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27569upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>931
                     /note="ultra-conserved element locus uce-5405"
BASE COUNT          260 a          169 c          210 g          292 t
ORIGIN      
        1 atgcagacac ggtttatggt ttagcttgct gggagaacat gactggagtg ttgttacagc
       61 agtgcttatc gcttgttcct ctagtgatga cgtattacat gatgaagaac tagataagga
      121 gctactttgg aatcttcagc tttcaaagaa cgttcccatg catgaatatc attaaatcct
      181 gctcagtatc cccaaaagag gaagaaaact ggtacaggat cggttgagca gagtatgtct
      241 cgctgtagta ctccagaaca atatcagtca cgtttacctt tgaaatgttt gtttttccta
      301 ttagatcact cgagtggatg gaaagaagtt gctgccgtac agggagcagc ttgggaagat
      361 actgcagcga accctacact taacctgtaa gcagggttac attctgtctt gtaacctact
      421 gcaccacctt cttcgttctg ctacacttat ctaccccaca gagtactgca gtgtgccagg
      481 tggctttgac aagcctcttt ctgaatactt tcctatcaag gcaaggattt tcatttattt
      541 aggattagag gatttgactt tttttttaaa aagcaatcat gcgctatatt atttgttttt
      601 atttggaatt agcagcaatg gaaagtgtaa ttgaaagatg ctttgggctt ggaaacgtag
      661 agcaagttac taaaatgacg tggttagcaa acagtgaata ctgactgttg ttgtagtgtt
      721 ttgtgacatt tatgttatgg ttgcatgact acaatgtgaa aatacaaagc aagagtgctg
      781 cttcctcacc ttgtcctgtg tgatgctttt acttgagacc cagctgtcct gaagtgcagt
      841 ggtatgaaaa gttgaatttg tatttcagca gcaggggaaa tgctttaact caaaacagtc
      901 ataggaagca ttgttgcact aggacagact t
//
LOCUS       KCLA01001698             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27584upu ultra-conserved element locus uce-3188,
            sequence.
ACCESSION   KCLA01001698
VERSION     KCLA01001698.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27584upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-3188"
BASE COUNT          289 a          209 c          207 g          284 t
ORIGIN      
        1 aatgttttgt ctcactgaaa gtaaattgag aattggattg ctcttccctg acagtctctc
       61 ctcggcactg tttggacagt gatgggcaca gcgctggatg tgggtttaca cataaaaaga
      121 gacaaacaca agtgcactgt ggccctctcc tcaggctttt cccgctgttt gcagaggcaa
      181 cgactgtatc cattagcaag gtcagtggtt tggagaaacc tggaaaatag cagctaccag
      241 aaacccacta gaataatatc tccagcaggt gatagattag ttggaacaaa ttggaaccat
      301 tgcacttgag caatgctggt ttctttcaag ctgttttaaa aatgtcgtca ttttcataca
      361 caatatcagc cccgcggaac agtccacagc aggttaattt gaatcatatg atgtatcact
      421 gccctcagct gacatgagct ccgttccatg tgtgaagcca taataaatcc attcccaacc
      481 gaggcaaatt ccctctgaga aggtgaacta atccaggcct cacactggca tgttagccct
      541 ccgtaattga aagcagggcc acctgttccc agcacagtta gcctatagag agaaaattag
      601 cattagatca gatacttaat atattgaaaa atcattcata cgacttgcaa gttcagctgt
      661 gggctgctta gcatgacatc atacataaac ctaggaatgc gtccacttga tcccagttta
      721 acagttttgt taaccatggt gtttgttaac tttgaaatga gaattttttg atttaatgag
      781 agctgacacg tgagaagggg aactagccag ggtgcagact tttctaatta actctgggtc
      841 atttgcaaaa cttctgagct ttctagtggg tttttttccc tttgctcttt tgcaaacaag
      901 tttttaaagc actgacactg tagccatgaa attatattta tttgattaag agagcaagga
      961 gaaatattcc aaacaggtgt accagcctg
//
LOCUS       KCLA01001699            1074 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27599upu ultra-conserved element locus uce-1805,
            sequence.
ACCESSION   KCLA01001699
VERSION     KCLA01001699.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27599upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1074
                     /note="ultra-conserved element locus uce-1805"
BASE COUNT          330 a          226 c          206 g          312 t
ORIGIN      
        1 tttgactcct agccaaaatc aatggcttct catcctggta tcagaggttc tggatactca
       61 cactgggaat aaggacattt cattcctcat agtggtttca tattgtgcca caaaggaagc
      121 acttggttaa ataatcccta cctctacact ttcacttgct tctttagctg aacagtttgc
      181 acagagtgca aatattagat gcccagcttg acccacaacc ttccctgaag taaggacacc
      241 acattatgtg ctagctgtag ctttgatttt ctcctagtag gctttcccaa aacgcatgta
      301 ctataattat tcagtccaga ggctgcacat ctccctgtgc tgtctgtttt ctccagcagt
      361 gcttgaaaat gtgctattat tgaaagagtt aaaaaaatcc ccttggaaaa gctaattatt
      421 gcatgcagat acttctttgt gtgatcaagg aggggacaat ttaataggct ctgtaataca
      481 accaagaaca aaattgcttt aaaggaagtc tcttgttgag tgacaactct gttgcctgag
      541 ccaattaggt cccaataaag agtgttgaat tggctcctgc tttctcatta attatgttct
      601 gtcacagaca tggggcttga tttagcaatt ttgtattaca ttaagatact gaaaggaatg
      661 gaacaaatgg ctcactctga taataggcat tctatacacg gtgtgacatt tactatccag
      721 ctgtccataa ggcagcctag cacttcagtt caggggttta tttgtcattg cttcaaaggg
      781 acactcagct tttcacaaaa aagaaacaga gaggctaata gataggacaa aatgtactgc
      841 tgatatgctt tattagagat aggatgctag ggttttgcta acaagctcat ccgttgggac
      901 taagccgagt ttgctgtcaa tcatcccaca cacaaaagca cactagttaa caaggagaaa
      961 tgaattacag acacttattc ctgcctgtgg gatcacaaat acaccaatct gtgaaagagg
     1021 cacaaactca gaagacaaac tacatatttg tcaataacct cctagaaaga accc
//
LOCUS       KCLA01001700             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27614upu ultra-conserved element locus uce-6829,
            sequence.
ACCESSION   KCLA01001700
VERSION     KCLA01001700.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-6829"
BASE COUNT          175 a          145 c          114 g          219 t
ORIGIN      
        1 atcatgtggc ttggaccacg tgctcttcag catccctttg gcaattttat gtgaccacag
       61 taggcaacag ggagggctgc tttgaaaata ccttttaaat tgactgagca cctttaatct
      121 tctgtttcaa attctataac atcccagaaa gacatcccat tgtcatctgt gtcacttaac
      181 tggcttcctt atggtacgaa tgcatttaca gtttgttacc gcagtcctag tttctccgta
      241 acaatcattg aaataagtca ggcattcaat cctggcaagc cacacactat tccacgcttt
      301 gaaattcata gatttagcag cgcagtgtca gatcattttt cataaccctt gtttccttgt
      361 cagagtgtca tagccagtaa agagctgcta gattagtaca aatatataaa tcttttctca
      421 gcttcacctc actgctgttt aatactgctt tactccacca ctgtgcttac tggcttaaaa
      481 taccttctgt ttggagaacc gcgtatttat tattattata ggggagtttt tgtgcaattt
      541 ccctgagcac gggctgacag ctgcatagca ctttgtcatt tatcattgta cacgagctct
      601 gtcaacttgg gaaacaattt ctataaaaaa attctgcatg aaattacttt gtg
//
LOCUS       KCLA01001701             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27628upu ultra-conserved element locus uce-7715,
            sequence.
ACCESSION   KCLA01001701
VERSION     KCLA01001701.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27628upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-7715"
BASE COUNT          262 a          154 c          122 g          243 t
ORIGIN      
        1 ttgcagcact cactcaggag aatcagccca cctgtttcca taatggcaac tacattataa
       61 ctgttttgcg aacaatagct tccagcccct cctggctttt tgcctatact gcattcagca
      121 tcattaggct caaagttcaa agccatttca atcagcacag cgctcagagg caaggattct
      181 tttccctttt atatttactc ttatagaagt aagctgctga aattcatttc tatttttttc
      241 tttttggaat ctcaaacatg aagtatatac tgtaccttgt tttacctgta aggaacacac
      301 acctgacaaa aggcaatctt cacatctaga gtaggttcac cacaataata caacaaatga
      361 cggctcataa atacctgtaa ttaaagaaaa catattgtat aaaattgtat gttgatgtgc
      421 aaacacaatg cagctgtatc tacattcaga ttaaaaagca aattctgctg ttcctggtga
      481 acgtcagtta gaatattgaa ctgtaaatag actttaaatt ctttctgatg ctcaacagtg
      541 ttatggcctg aaatgtgact tgactacatc cgcaaaattt tacagtagct gatgccatta
      601 gctcaaagtt tattgtgcca tttgtatatt ccttaaaaat aaaaatcagg tcaataacat
      661 tataaactat cagggaatgt gagagaatta tagaaaccaa gttctgagtt gacaattatt
      721 aggaaagtta cagaaattaa aacactgtgt cactgtataa attcatggca caaccactcc
      781 a
//
LOCUS       KCLA01001702             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27643upu ultra-conserved element locus uce-7699,
            sequence.
ACCESSION   KCLA01001702
VERSION     KCLA01001702.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27643upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-7699"
BASE COUNT           97 a          134 c          155 g          104 t
ORIGIN      
        1 cccccccccc ccaccgctcc ggttccccgg ctgctaattt cacgcaggca cttaaacatg
       61 atggataatt gtgttctgct tatcaatgtt taatgtgagg gctgctccgt ctgacccggg
      121 tgccctccgc gggagccgcg gctcattatt gatttcacgg tcacacctgt gacattacct
      181 gcttcctggg aagtagactt tgacgcccct gagaggcttc ggcagccgga gctaattgtc
      241 agaagaataa tcgagtcagc aaaatcatta caggtgatct gtgtggtacc actggtttag
      301 ctgcctctaa ttaggtgcgg gagaggtaac gcatggcggc gagccgcgcc gggctggatg
      361 tcggcaaaca gagcgcagga ggggactcgt tcattagcgg cagcgtcgca gcccgagggg
      421 gtgctctcgc ggtgtaacgg ggcaggatgc gggccctggg catcggcagg aggagcagtc
      481 gggccagaac
//
LOCUS       KCLA01001703            1122 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27659upu ultra-conserved element locus uce-6414,
            sequence.
ACCESSION   KCLA01001703
VERSION     KCLA01001703.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1122)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1122)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1122
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27659upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1122
                     /note="ultra-conserved element locus uce-6414"
BASE COUNT          313 a          204 c          218 g          387 t
ORIGIN      
        1 tattgcactg aaaacagttc tgagctgtgc ctgcatgagg gagcctctgc accctgaggg
       61 ctgggggatg ttgtgagcac acactgattt gcttgtgtag ccgatattct gtttcaagag
      121 atgctacccc aacagcaagc actgacccga gtactgcata tgttatagca cattgcagca
      181 tcagtaccat ttcttggctt gtgtttcacc aaatagatct ttaataattc actagtgaat
      241 ctgagataat ttatccgtat ttgtatcagt tatatagaat tcttgcaaga atttacagac
      301 ttgtttgaat tagaaacatc tttgggtctc tatctttcac acatgacaag tagcagagaa
      361 gaagataatg ggaatatggt gaccttcttg caattaaaat gccaccagag tctgtgtggc
      421 ttcctgtgac agttctgtta atctctcttt tagtctcttc ctccacctct tacaggcttc
      481 tgtcttcaat ctcctttcct tccttgctag ttcatactgt aactgacgat gggttttctt
      541 ctcgactggc ttcatttttg ctgttcttcc aggagaaaaa tctattacct gcatcgccga
      601 tacaagttca tgaacaggtg agtacaattc ttatgtcagt ccagtttatg ttttcttaga
      661 ccaaataaca gcaataatca ctaaggtcaa gcttatttgt agacagtgta gaaagaatga
      721 ctacacacta ggacatctgc aaaaacaaat acagaagtta tggttttaaa gcatctgcat
      781 cataaaagag gcaattcatt ttactagtgt tgcctttttt ggaataagaa aatatttttc
      841 agtggatggg ttcttttaaa gaagatgtta gtggaaatat tatctttctt ttcatgtaga
      901 tcactaagga gttatttggg attgaattac cacagttata gatatcattt gcatatatct
      961 tgcttatgtg taatagcaat ggctttattt atttattact tcctctgggg ggttgcttag
     1021 tgttctgtta gtagatagaa aaacaatgag ccaaggtcat gtctggtgta atgctattga
     1081 gcttgaaagt agttttcaag aatctttgaa ctgccttact ca
//
LOCUS       KCLA01001704             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27674upu ultra-conserved element locus uce-747,
            sequence.
ACCESSION   KCLA01001704
VERSION     KCLA01001704.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27674upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-747"
BASE COUNT          202 a           99 c           83 g          177 t
ORIGIN      
        1 tcaattttat tcttcattca actccagctg ttaaaaacct gttataagga aaccagaaat
       61 gcagatagtt tatatgcttc cacagctgta aactggtttt atttgtatgc attcctttaa
      121 tagtataatc caaatgcatt ttgcttgata agtttttatg tagatcttac aatacatttt
      181 tctaccacat gttggaacat ttgtgcgaaa aaaaaaccca tctttatgtt tcaaatttat
      241 gggaacacaa ttaaaatgag aggggtccaa aggtatcaag ataattacat ttttctaatc
      301 ttactaaaca agataaatta cctgcaggcc ctcttataaa agatgaaatc ttcataataa
      361 gtgaattaat caagcagcag cttgctactg cacatgcatt tataacagga atgattcaaa
      421 gacttatttt atggggaaat taatggaaac aggcttttca ttcttctgca ccaattgaaa
      481 acctcagcaa ccagctgccc acttgtcaag aaaacagaaa gaagctggaa acaaagataa
      541 ataaaaacac ctttttcctg g
//
LOCUS       KCLA01001705             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27690upu ultra-conserved element locus uce-2509,
            sequence.
ACCESSION   KCLA01001705
VERSION     KCLA01001705.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27690upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-2509"
BASE COUNT          142 a          113 c          132 g          225 t
ORIGIN      
        1 tttattgtga aacgtcttgt ccagctatgg ctggacaact gtttagtttg tttcttgatc
       61 cctccaatat gatgttaccc taaaatactg ccttaggtgc agttttgggt tacattagcg
      121 ttttatctgt tcagtcgtat tagcaggaat aaagcgactt gtttctgttg tacttgagtc
      181 ttacgaaaga gtgcccttag tttagcgagt ttccaaaggc tttagtacca cctgtattac
      241 aaaatggggg acccaaactc ccggaagaaa caagctctga acagacttcg tgctcagctt
      301 agaaagaaaa aagaatcttt agctgaccag tttgacttca agatgtacat tgcctttgtg
      361 ttcaaagaca aggtaacttg ttgatgttcg tctcttgctg tgttgcaatg cgtgttatct
      421 agtgttgctg cctgattgtg ttgtgtggct aatccatcat agattccgtt gactcttact
      481 gctaattgct gtcatgttta ttcatgcttg tcactttggc ttttgatata gtcagtgctt
      541 tattacatga ttacttggta acttctgtgt taaccgtgtg tcttttaagc ctgattgggg
      601 tctgaatttc gt
//
LOCUS       KCLA01001706            1076 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27706upu ultra-conserved element locus uce-3638,
            sequence.
ACCESSION   KCLA01001706
VERSION     KCLA01001706.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27706upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1076
                     /note="ultra-conserved element locus uce-3638"
BASE COUNT          300 a          223 c          208 g          345 t
ORIGIN      
        1 attagcattg aaaactgtgg gtgcagcaaa ttctttgtaa aaccacagtg atgctgcaac
       61 taaaaacatt agaagaattt tctttcagtt ctgtgattct tcctgtacaa aaccattttc
      121 tggtctggtg tgtggctgct agcagcaatg ggctgttgct gtttcctttc cccatagtga
      181 ccctatgagc ttttcctaat ggggacccaa tagctctgtg gtcccttgtt caaaattaac
      241 tcacttccat gagcctctga agatttttgg catccctttt acataggctg cacattaggg
      301 tcaagttttt gagtttccta atcactctgt tctggcatag tcttgttgcc actaaagcct
      361 cttttcatgc ttatttagtg cctcagaagt gctttcaagt ggtctttgat aaatcatagt
      421 aagtgttatt ccagttgttc aatagcagta cctgctcaag tcctttttag ctcccaatgc
      481 agctgttctc tcttgccttg ttctaccaat gacagtaatt cattccactt gggctgacta
      541 acttatttca catttatttg cacattatga gcagtgtcat tctacttacc cttcagacag
      601 taaatggttt gaaaaattca actgtaagaa atattaagca tggggagggg gacaggaaaa
      661 tggaaccttt gcaattgggc cccaaacaaa accgtaatga ataaataata ctgtgaaatt
      721 atctcaatta ctgagtgtat gcaaaatcag aggtgctgca taaacgtgaa ttactccttt
      781 gagaaaacat ttctctttcc ctccagctag tttagcttcc atagcgtaga gctagataaa
      841 atattaccca tcaggtcagg aaaataatta gtcattattg cttccttcct aagcaatcaa
      901 acgacccata tgaattatgc gtgtttgcag cctgcacgtc tggtgagagg gatctatata
      961 aacagatgat tttgggctat gtgtttgcat accgagacag tacttccact cccctctaca
     1021 gagaagacaa gttgaaaaat gagcagaaca aaagcaaggt ggtgttttgg cgtcct
//
LOCUS       KCLA01001707             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27722upu ultra-conserved element locus uce-1629,
            sequence.
ACCESSION   KCLA01001707
VERSION     KCLA01001707.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27722upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-1629"
BASE COUNT          122 a           74 c           53 g          114 t
ORIGIN      
        1 tcaattttta acgctttatt cattgattaa aagaatatac atttaacata aaccgtacaa
       61 catcagtcat cgattcaaac actcagctgg tttccttacg ttttctgtca ggagttcttt
      121 tttcatctgg tcacgtagat aagataaaat ctcaccacat ctggcattta cacacactgt
      181 gccagcggat ccactctact gatgtacata taaaatcagc atggtatgtg ctcactggag
      241 acaaaacagc gcacacctgt caaaaggtca tttgaatata agatggtaaa accatttgta
      301 aaacacatat aaactttttc cataaataga atcatatctg gacatctgtt gcataaattg
      361 tgt
//
LOCUS       KCLA01001708             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27737upu ultra-conserved element locus uce-3828,
            sequence.
ACCESSION   KCLA01001708
VERSION     KCLA01001708.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27737upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-3828"
BASE COUNT          291 a          175 c          145 g          195 t
ORIGIN      
        1 tgcgatgaag cagcaccaag atactgcaca aataaggcca aaaacccttc actacaatta
       61 atgtgtaaaa tgtaatattt aacaattaac agcaccagtc tccccaactt ggctagtatc
      121 tcttaagcag aatagaattt taagacttct cttcctttca attgctagag gccttgaaca
      181 gcagaatgat tacattcgta acaaaattgc ttctatcctg atcaacctct ggcaccagtg
      241 tatcagaaac ccaaagacaa gggagagaaa gagattaagt gagtctcctc agcagtagaa
      301 ttaagccagt gaaccccaaa tacctacagg ctttaaaatt gtttacgttt tttctcatag
      361 aaagtggtac gtaatagaaa acttaacttc tgttctgctt gggtgagcca ggaagccttc
      421 ttgcctcatg taaatggaat ggcagctagg cacttctgaa agaagacaac actagtcaaa
      481 ggactggaat taaaagtgtg caagttatca gcaagacagg cagaagagca acaaaacaga
      541 tgcagcttac agtgaggagg aacctatcaa cacacagtca gcacttcaga ccagaatgta
      601 caaggtacag cagagaagaa aatcgtagag taaggattac ataccccatc caacattcgc
      661 acttaagttc aattccttac tgtaatcaac tttgctgaaa gctgagtccc atgataatct
      721 aaaccattca gaaaccaaaa ccacagaagg cagtacaaat gcttgaaacc ctgtatccat
      781 ctatgtaact aattcaacct aacatt
//
LOCUS       KCLA01001709             452 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27753upu ultra-conserved element locus uce-5113,
            sequence.
ACCESSION   KCLA01001709
VERSION     KCLA01001709.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 452)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..452
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27753upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>452
                     /note="ultra-conserved element locus uce-5113"
BASE COUNT          115 a          125 c          105 g          107 t
ORIGIN      
        1 ctttctcatc tctcacaacc cagggagctt ttaaagaaag ttttcttaaa tcgttggaag
       61 gcgtttattt tcttgcaaat taattctttt taactcttta ggatagcttg gaatcccata
      121 aagaaagatg aattatcaca tactgagccc aagctgtgaa acaggaggag acaaatagag
      181 acccctgctg tgtttaacaa tgtagaagaa attccagact caatagcaaa attccctgtc
      241 ctgtttctca gcccgcagag gctgtcagga aggctgcgaa cagcggaggg cactcttgct
      301 atgcagaacc cgcagctgcc ccggcaccct cgggctgagc gattcactag cccgcacctc
      361 gcagcgcgtt aagcggcagc cacctgtggc acaggcagcc tgcactcgca gctcctcgcc
      421 tgggcgatgg agcactctgc tcccttcagc gc
//
LOCUS       KCLA01001710             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27767upu ultra-conserved element locus uce-6467,
            sequence.
ACCESSION   KCLA01001710
VERSION     KCLA01001710.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27767upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-6467"
BASE COUNT          219 a          144 c          136 g          205 t
ORIGIN      
        1 tgagaagtgt gggaatggaa caatttgtaa ggcacaaaaa taacctgcag gcctttcaaa
       61 cacctagaaa aaagagaata ttcaaggtct ggtaaataaa cagggagagt gttgctatga
      121 cccttcccag cctcttttgg tccgagtccc ccattaagca gtagataaat agctacctgt
      181 tataagggct ttttgtttaa taaaaccact ttgacatgtt ttgcttttcc ttaattaaaa
      241 acacatcaag ccatggataa agcactgtgg aatggcttgt tgtggcattg ccttttacag
      301 ctggcaagca aatttctaat aaaatgggtt ttgaaaggaa tattgccttc attcaaatct
      361 cctataaaaa ctacccatcc attaattcca attaatgaca ctacagcatt tccacgaaca
      421 ctggtagtaa ttcttggcta atggatgatt ttcaacaaaa tcagaatcaa tgtaagtttg
      481 gacaggacct ttgcagaatg aatttactgc ccagatggta gctgaaccag agcacagtgg
      541 ttttctcaag cacataaatt acagtggttt gatctggttt ctcagtgcca ttgacagatc
      601 ccatgctacg agtttcctgg ggacttcaca gagataataa actgcctcct gctctactgc
      661 tcaatcctgc aagtctgtcc aatgggagtt gaccttatgc acaa
//
LOCUS       KCLA01001711             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27783upu ultra-conserved element locus uce-5101,
            sequence.
ACCESSION   KCLA01001711
VERSION     KCLA01001711.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27783upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-5101"
BASE COUNT          302 a          181 c          169 g          274 t
ORIGIN      
        1 tttccccaag ttccaaacca gccccactcc tatctcttta aatctgcttc ctcctaagca
       61 caaacatgta tgtttttcat aaagttctgg aaattgtact ggacccgagg gaaggtactg
      121 agtggaaacc ctgatacctt gagattagaa ctctactagt cctgcggtac aatgtgctgt
      181 ttgtaacaat tacaataata cacctgtact accattgtca gtgtggagta gccacatggg
      241 gtctcattag tattgtatta ggactgcatg gggaaacgga taatggccca taatgaaaaa
      301 tgccaaattt tctatataat aaaaatgaac ttgattaatg aaaatcactt tcagggaaag
      361 agttacagcg ttgttagaaa taaaaaatga tgtattaatc cgacactctt acagatggtc
      421 ccaacctcct gacaactgct attcatttga gatgctatta gcatgcataa ttatgctaat
      481 taagttgtaa ttaagcacca attcttcaga gggctttttt tgtctatcat ttaatacaac
      541 tcagcttcaa agagtgctta aagctttaca cagtgtttca tgagaaaggg gttcccaagt
      601 ttcttcggaa agattcacca gctgagccat ggaatagggc ctataatctt tgttttggtt
      661 aaagggaaac cagcaaattg aagcagggtc tgccaattgt tgataaaata attaacactt
      721 tctgctaaaa tagcacagtt catactagga caattatgaa aaggagaaaa atggtataat
      781 tatcaatgga gccaacacca gtggcctatt atggctgcta ccccctaatt tgcaaaaaat
      841 aattcattga aaagtagatt cccgtaaata ataataacgg tcctgattca gatcctcata
      901 ttgtgtgcag cccctcattc cacgac
//
LOCUS       KCLA01001712             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27799upu ultra-conserved element locus uce-3633,
            sequence.
ACCESSION   KCLA01001712
VERSION     KCLA01001712.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27799upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-3633"
BASE COUNT          277 a          188 c          217 g          274 t
ORIGIN      
        1 ccattagaaa tctgatttgt caaagatgtg taagctacag tcacttcttg actgggtgat
       61 cagtgctaaa gaccttgaaa aattggcaga agtgttcacc ctgtgaaaac attaggatca
      121 ataaagcaaa ttgataaata ccatttcaca gaatataggc tcggggatga aatgctctag
      181 cacgcagcag taactgatca ttccaggtac gcaacaccat actttgaaag ccgtgcagtt
      241 aatgctgtaa caggaaggac tgtgcaaaat gtgattgatt cttgttcctt atgccataaa
      301 aagcagctgc agttacgtgg ggttcttgag taactgaagt gagaggttac cagaaaaagt
      361 caagccttac aatgcagaca aagagcttcc acttccagca gtagtacggc atcagagtgt
      421 ttcacagaca ctcaggagta agctgtactt ctgtgtatca gtgaagcagc aaattgaatt
      481 ctcataatat gttttgaaaa ttagtcttgt taggtttgat gaggtggaaa aggtactgag
      541 atcactggtt tgttccaata cgttcagtcc gctttccttg gatgtttgcc acggctaatc
      601 tttctaatgg cagtgtagct tgtaaaccca tttggtagaa agctgtgcat ctcggtgtca
      661 gggtatcgca cctatacggg tggtaaagaa gtttctttcc gagcacgcag acccttttgt
      721 ggcaacacca gaaactgtat tttcccgcat gtcagcaaag tctcggtatt gcctttatga
      781 attcggtggt gagcagggtg caccgcaact gtcattttaa atacacccac acatactcat
      841 gtaggtaata ttaaccggct gcgtcatttg tgtctgaaga aatttgtcga tacagacttc
      901 agttcattca gacaagttat tcaaggaatt taggctgtca cacagcacct gggttt
//
LOCUS       KCLA01001713             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27829upu ultra-conserved element locus uce-6125,
            sequence.
ACCESSION   KCLA01001713
VERSION     KCLA01001713.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27829upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-6125"
BASE COUNT          186 a          133 c          134 g          222 t
ORIGIN      
        1 tgctgaggaa atacgtgctg cttgcaagtt gctccttttg gcatagacgg gacagccctt
       61 ttcagtgtgg atcccgctcc atatgtgatc gctccctttt tgccaaactt ccttagatgt
      121 gcaccaaatt gcagaaagat gaatcccaac tttgcataat ttgaacaaga aagcctcgca
      181 gtgctacttt tccgtttaat ttacgggggg gggaggcatt ctgagatacg taggacataa
      241 gtaagggcag aatagagccc ttaatcttaa ttatgcattc tgcagtatta taaatgacta
      301 cagattactt ccaatgtttg gtataatctt acagtgtgca gatgtggttc tctttggtat
      361 atgccatctt tactgaactc acaatttcca taatgctgtc acattctgca tgggaagcag
      421 atttacagat aggtaatcca tgtaaggtat tttaaagaca gcttattaaa ggattgaggc
      481 ccgctgttaa attacatatg ctttcaattg ctctaaggag caaacagtat caagaagtac
      541 aataatttag ctacagctgg agaaaggcct atttaaagtt tggatgacag atcctttaaa
      601 cttttccttt aagttctttt ctgctctcta tcttctcctg cgtagcacgg tattttcctt
      661 tctacactgt aattt
//
LOCUS       KCLA01001714             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27845upu ultra-conserved element locus uce-279,
            sequence.
ACCESSION   KCLA01001714
VERSION     KCLA01001714.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27845upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-279"
BASE COUNT          232 a          131 c          147 g          235 t
ORIGIN      
        1 tctgagctta gatttttgat gtgaatggga cttaacaatc agaaaacagt agttcattat
       61 tctaattcta cttttaagca atttaagata ctgcttggaa aggtaggaaa cctcaagaaa
      121 ttttcaaaga caaagaacta atagctctta atatccccgt gttcgtgtta agagcaaatt
      181 aaaagagtga aagaatggtg caaataattg tttcgtatgt tctttgcttg tgactgctgt
      241 aatcatccag gctgatttac aaatgtagac ttgaaggttt ctcagcttcc tgcagcgtag
      301 aagactgtta ctttggcact cacactcatg cccttgtaat caccactcaa aactgtgccc
      361 tggtacttcc aattcccagt ctcttgattg aacatctcat tctgtgctaa caaggtgtcc
      421 aaggtatttg aacatgagct gcagtcagaa aattgttaat ggtttcactc attaagagtt
      481 gcagcactag ttttggtaat ttggtaactg tcgaaattgc aagttgattt ttcccttcgc
      541 tttaaggagc gatgctaaaa ttcgagaccg ggaaaactaa cagccacaaa accccacaag
      601 ggtgcttaaa tccctgtatt tgtcttgaag cagagggttt tcgtagcaaa aagattctta
      661 ttttggtttt aaggttacgt tttcaggtcg agtattaaat caagtattaa attcaaacct
      721 ggagaggaaa aatgtataaa aagga
//
LOCUS       KCLA01001715             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27861upu ultra-conserved element locus uce-1107,
            sequence.
ACCESSION   KCLA01001715
VERSION     KCLA01001715.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27861upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-1107"
BASE COUNT          209 a          169 c          157 g          204 t
ORIGIN      
        1 gttcgattac ccgagcttca tcagggaaat gcttcctctt cgggtgccag cgcttagaga
       61 gagtgacaga gaacatatac ggcagggcaa atatttgttg tacaagataa acacacaatt
      121 atctaaaatg taatcttaat atgacttatt aaaatagatt aggttctaat gcgcgctgca
      181 atttgcacat tacacggcac acgccgcaca ggcagcctcc gccaccgggc tcccctgaca
      241 gcctgcacaa ctgaagatat atggagcggt gggaaaaacg ccgctatctg tctctaaatg
      301 gatgtatttg gtgttgatag tcagataggg ccctcacctt tatcccagcc tgtttctgac
      361 ccactgagtt ggtgttaatc acccctgtgg gcaccaataa tttccccata tgtggaattt
      421 gataagttag agcacccact tcatttcaag aagattccag ctgactatcc agttatcgct
      481 atggacagct tcaagcactt ccatgccggt ccttgtattc tgagctttat caagtgcttt
      541 gcactttttg tcttttatct cttaattgag acctgactgg aagaaatgcc tatctcttag
      601 agtgcgctgc attaagcatt aacttgaacg gcttcggcga ctcgagctac agaaaacctt
      661 aagaagctgg ggaaaaggtg aaaaaatctc cccaaatctc tatttagaag aactgtgtaa
      721 atgctgcaga gtaatagaa
//
LOCUS       KCLA01001716             477 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27877upu ultra-conserved element locus uce-2356,
            sequence.
ACCESSION   KCLA01001716
VERSION     KCLA01001716.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 477)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..477
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>477
                     /note="ultra-conserved element locus uce-2356"
BASE COUNT          168 a           99 c           83 g          127 t
ORIGIN      
        1 agaaagagaa aaaagaagaa agtgacaaca ccaaaaaatt ccaagaaaaa aaattatcca
       61 cttcctcctg ttttcctctc ctccctgtaa agcgagtgtc ttatcctcag agaaattcac
      121 ttcattgtta gaaatagcca aaattggctt gcaactagta aagatgccaa gaatttgcac
      181 cttgctctgt gacctaaagc aaaaatgaca tgaacattga caaatttgac aaggaaattt
      241 gtgcaaaaaa caacttctat ttggctagcc aagcagcaaa tatgtcggat gatatgcttt
      301 attaagcaat ccatttttca gcaatagctg caccatctgc aaaggttagt gtgcatcagg
      361 ctttccacag aatttcatct gcgtctgcag ctaggtgcaa cacacgacca catttttcat
      421 gtacatacaa ttttggatgc aaatagaata cttgatgaaa gaggtgacct tccggac
//
LOCUS       KCLA01001717            1102 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27893upu ultra-conserved element locus uce-6787,
            sequence.
ACCESSION   KCLA01001717
VERSION     KCLA01001717.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1102
                     /note="ultra-conserved element locus uce-6787"
BASE COUNT          301 a          189 c          215 g          397 t
ORIGIN      
        1 gaggtaatga agagtgatgc tttctgttct taaccctgcc ttgggcctgg tgggtgactg
       61 tgggcaaatc actccctcct cagttcctgt ctctataaaa attattataa ttatgtgaat
      121 tattttgcgt ttcattttga gagctatagg gaatacacag aaatgacgga gttggaatat
      181 gataataagt ctacagtggt aaaataagca tctgtattca agacggcttt gtactggcag
      241 ctgattgcaa aattattgat tctactgttc tttcctgttg agggtgttac tatgtacttg
      301 ttcacagaat tgtagaacaa aaaattagct acttcttgtg atagcttctt attcagaatt
      361 taccatcagg ttattgtgct tttattcttg cccattacca tccccatgag gaacagttaa
      421 agctgtagtt aatggaggat aaggacagca aaggtctgtc tgtctttctt ttctctatct
      481 cctccctttc tgtctctctg tctctctttg gccattgaaa atgtaggtca tattgcatca
      541 ccataaaatg gtacagtcag aaaggtgttt gaaaaatgct gacatcctta gcccagagtg
      601 catgccagtg tcctttgttt acattgagaa tagagttgta cctgtgtaag aaccagcgtc
      661 tctgttaagg ttagtggtat ggaacctaaa ttatgagcta gattataaga tgactttcat
      721 ctgcctgcag tagtttaaaa ttagacagat aaaatccggc cactcacaat aatgatatac
      781 atgaagagct aatttgaaat ctttaatctg ctgtaactgt gatggtgtag tttgaataat
      841 actaccttta acagaaaagc tcagtaataa attttgcaag tcaattatgt actctgcatt
      901 gtcttgatta actgtgcatt tctgtcttga aaaatatatt tgttatgtgt ttatatattc
      961 tttttaatgt tactgtttta tgttgtgcat ccttttacac gagccattcg agcgtttttt
     1021 tggtaaatgg aaaatcctga tgcccagtgt ctcactgctt gctaccagtc ttttgttgtt
     1081 tgtgtttctg atgcaataca ag
//
LOCUS       KCLA01001718            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27938upu ultra-conserved element locus uce-7024,
            sequence.
ACCESSION   KCLA01001718
VERSION     KCLA01001718.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27938upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-7024"
BASE COUNT          302 a          208 c          179 g          332 t
ORIGIN      
        1 aaatatttct gaacacagaa gtgctaagac taaacgaatc cttacagatt aagtagtgcg
       61 gggctggaaa atttttatag gtaacattcc ccacacattg ccttttcttc aaatgggatg
      121 gtttcctctc cacttaatta ttgtgctctt ataatgtgtt tatcttcaga caaaggaggg
      181 tatgttgagc cactcttgtg aagtcttata gactgtatat tgtttatatt ctgctgtaca
      241 ccacattcct caaaaaacaa aaagggccaa caaaaacccc tccagtgtag cattcagcct
      301 ctcaatgtat ttcatttgtt acggtcagag caattttaac aatgcctttc attttcttat
      361 agcctaaaat gattttcttt ctgtgaggct gttctccaaa acttctcttc ccctttcagg
      421 gtatcatttg caatttaaag ctaacctggt gagtgtactc acaatgggct tgcccataaa
      481 atggttcaag gcctgcctgc atgcctaatg aggttgatgt tgagctattt agctctttgt
      541 ccttccataa tatctactta atgcagttca atgggagtgg attgttagaa gcattaaaga
      601 ttctattaag tctttactaa agccactcta ttctagtcca gctgtatagt ggcaagagca
      661 ttaaatttga gaatgtagtg ggaacaaggg ccctgaaaaa gcacctataa aaaaaggaca
      721 aatttcctaa cgaagtaaga ccacactcaa tttaagacct gctacttttg tatctagatc
      781 taaagagttt ctccatgtgc atctcccagt gttctgaatc agctctagtt tcccttaacc
      841 gctgaacagg gcaaatttca aatcttcatt tgtttccaga gcacgtgagt aggtttttgc
      901 tttgccccac tgttgaaaac aaatcaggtt ataattttaa acagagagca gctagcaaat
      961 tcttgcaaat gcctccttgc agataacatt taaatgcact gtatttaacc atttgcttaa
     1021 a
//
LOCUS       KCLA01001719            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27954upu ultra-conserved element locus uce-4027,
            sequence.
ACCESSION   KCLA01001719
VERSION     KCLA01001719.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27954upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-4027"
BASE COUNT          277 a          275 c          266 g          226 t
ORIGIN      
        1 catgagactt gcctgagcta aagaaggtgc ccgggcttct gcaaagagat ctactgctgt
       61 gttcatgctc tggaggattt tgtccccgag ataaaaaatg tggattaaaa tctccccaga
      121 gcagggacac gttgctcgca ctcacacacc tcacaagcac tcggcaactg ccctgacccc
      181 cgtgccatct gccctccctt cctccagcct cgctgccaag cccctcccag ccctggccag
      241 attttcagac ccccctgcct gcacacgggt acggctgcac gcaggggctt ccaataacat
      301 cttcccatgc ggggacaggg aggtagacag gtgcacacag agccggcacg ccaggactca
      361 cacctcacag ggacacacac aggaacccat gcacagagct cacacacacc agagagctgc
      421 agctcccatg actttcggga cacacacaga agccaagaga cattatggca ggcactcact
      481 tggatttgtt ctcctcatag tgagcactgg tcttaatgta tctggccagt tctatctgca
      541 tatcgccgaa taaaggaacc acctgcagct gctggaaaag aaaacaagag atggttgaaa
      601 cacgacgtgt tgaagcacaa cacagggact atggagttga atcctgtgcc tctgaagctg
      661 tggaaagtgt caatctgttt aaggcaaggt gcaaacctga accctgggtc atttcacatc
      721 taggaagcga tgatagtgat cacaaggctc tttgtgtgag tgccctggag ccttggactt
      781 gctgataagg ggctggttat ggacaggaca gtttagtgct gtaactggcc aaaggaaaag
      841 ctctttacaa gaaaaagaga gaagtgtatt tttgagcaga gataataatc cataatcctc
      901 caagaaaaca gagggttgaa gagccagtgt gttggtattt tggcagcaga ggagctatag
      961 gctgctctgc tatctggatg ccccaagacg tggcatcttc ccccagggac tcagactgtg
     1021 ctttggtact gcagctgctt gtga
//
LOCUS       KCLA01001720            1027 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 27984upu ultra-conserved element locus uce-2306,
            sequence.
ACCESSION   KCLA01001720
VERSION     KCLA01001720.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="27984upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1027
                     /note="ultra-conserved element locus uce-2306"
BASE COUNT          297 a          223 c          241 g          266 t
ORIGIN      
        1 aagaaatact ttaggttagg tttctccttt gtgagcatct gacgtttgaa aacgacaatt
       61 acaaaagcaa accgcgcagg gggaactgcc tcgccccttc acgcagcaca cagtcagcgc
      121 ctgcgacttt tcccttgaca actagataaa tgcatagttt ctcttaatta gcctttttaa
      181 ttaaaaacac cagaggtatt tgtgattata atgaactctt ctgacagaat ggtcacttgt
      241 tcttctggat gccactccag caacacaaga tgtttttaac ggagggctaa ggaagaaata
      301 aacggtgccc gcgaaagcgc cgtcccctta gttgggtctg aatgagatgg atgtgtatct
      361 ggcggttttt agaatggtgt ggggcaatat tggccatcat tagtacccca gtatggatcc
      421 aattcactaa ttacttatgc tgtcttggtt cactgagatt taagtaccaa gtcaatccca
      481 ttatctgcag tctcccaagc ttgccagagt catctgtctt ttatggaaaa aaagcacaag
      541 ggttatcaat aggaccctga aatacttggg atttcccgct tcaggaagga gcaagattag
      601 tcttgactaa agtcgcatct tctctaagct gctactctga atgtgataaa agcaaatgct
      661 gacaattagc cataactata taaagagaga atggggtaga cgagagcagc gaggagagaa
      721 gtctgccaca catgcctgca tctgtcctac ggttgcaggc agcttttcat atcacctcag
      781 agctacaaat tacaattcgt ctgttacaaa cactcgataa tatagtcaga aatcagaaat
      841 taaaatattc caagggcctc gggcctcctc agagagaaag agagagggag cgaggctgag
      901 agagagagag gagggaggga gagggagaga gagaagtacg cggagcccct gcgctgcctg
      961 tgttgtttgt gccctccctc ctccatccta catgtttaat gtctgcagca gtaccaaggc
     1021 cttgtct
//
LOCUS       KCLA01001721             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28000upu ultra-conserved element locus uce-5044,
            sequence.
ACCESSION   KCLA01001721
VERSION     KCLA01001721.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28000upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-5044"
BASE COUNT          214 a          234 c          216 g          314 t
ORIGIN      
        1 cctctattca aggaaacgtt tctgaccctt caaagaaaac ctacatgata cagtggctgt
       61 caagacccga tccagactac cccatccaga aaatatcttc aagtaaaaga cccatttata
      121 actctgcctt tgcccttaaa tgcatgccac atcgaatgtg gactttgcct tttgctctct
      181 tcttctctct atgcggaaag ttcccttgac tttgccaagt ttaaatcttg ggctgaatct
      241 ttttttcaca ccaggcactc ggtgctcggt gtctttcttc tctggagctt gcgtagcgct
      301 ggtggtggag gtcttgaagt gttggatgtg tgaagttgga tctccacggt atgttgcagt
      361 cctctgaaag ggagctggga acggtttgtt tgttgcttgg tggtggtgaa aaaaggctct
      421 tactggttca tgatgttcag tttgatagca aaactgagaa cttattgtga atgtgatcac
      481 atcacaataa tgacaccttg tagtgctaaa gttctccttt atctaaaccc cctaaatctc
      541 ataactctag tttcagtttg ctgacagggt agtccgatga gtgaaagaat cttctcattc
      601 cattctcctt tgctatggtt tactcacccc ttctgctcat tctgtatccc tcaccctctc
      661 atttacccct ctaacccgtg gagaactcac tgagaagcag cagctcggtt tctgtcggta
      721 cttgccatgc tgctatgacg ctgtctgctc tctccaaact cccggtggtg gtttgaaata
      781 ctgttccttg aggaaagctg cattccttct ttccgctgca cagtttttgc cagttttgca
      841 tactttgact ttaggaacaa acctgaagca ggacaggcgt ggtccacggt gaaggttgcg
      901 tggttgtgtt tttcttaacc tggcggaggc aatacgatgg tttcatcgat tctgatgtct
      961 ccagctgctc ggcgtgga
//
LOCUS       KCLA01001722             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28015upu ultra-conserved element locus uce-4610,
            sequence.
ACCESSION   KCLA01001722
VERSION     KCLA01001722.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28015upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-4610"
BASE COUNT          263 a          212 c          201 g          282 t
ORIGIN      
        1 ggctaccttt tccccagcaa cagaaaaggg aaggcacagt ttgacaaatc tcagtgcctc
       61 ccatttagtg gtccccatct ctgcctacaa agtctccaga ggcagaaacg gactagatac
      121 agttcgttct gatggctgga agtactttgt agagaactga gtgctagaaa acatctgttg
      181 acactgtccc ctccttggca caggcctatg cagtggtcag tccctgccaa ggcaaagcca
      241 gaacatttca gaacctaacc aaaatttatt gccactctcc tgcctgactg gctgcagact
      301 atgcaagtgt gaggagacaa gccctctgac aagccatgtg tgttagatgt acccaagagg
      361 caagtcggtc agttggagca tgagtggact gggtcagaag aaaaagtctt tatcccattt
      421 tctctcttct tctctttccc aggaacgagt ggaatatctc tttctcataa tttttacagt
      481 ggaagcattt ttaaaagtaa tagcgtatgg acttctcttt caccccaacg cttacctccg
      541 caatggctgg aatttactag attttataat tgtggtagta gggtgagtac tgaacttctg
      601 tctttgaatt cactgcacgc acggagatac tggtgggagg aacaggaagg tgggtgaatg
      661 tttaggatgt cacatatgga tgatagaggt tgctgtccat tttgttcctc ctacagctac
      721 aatttattcc tcctgtatta gccctacaac tccacatatt ttaccaagtt ttatggtgta
      781 agcttaacat tttaaccttc ttaaagacta actctactct tgtagatcaa atcgtcacat
      841 tgattcccct ctgagttttt ttaagcttgg cttttaattg gaataaaagt gaagtacaac
      901 accaccttct tctacctaag gcaaagcaat aagcaagggg ttggaattaa caagtatt
//
LOCUS       KCLA01001723             241 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28029upu ultra-conserved element locus uce-2136,
            sequence.
ACCESSION   KCLA01001723
VERSION     KCLA01001723.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 241)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 241)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..241
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28029upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>241
                     /note="ultra-conserved element locus uce-2136"
BASE COUNT           58 a           58 c           65 g           60 t
ORIGIN      
        1 gctgctgctg ctgctgctgc tgcaggtccc tgccgtctac cagcagctcc gatggctccc
       61 ggactctcca gcacgtccag tcaagccagc ctggcccagt aatgatttag gtgagattaa
      121 caaatatgtc aatgtctatt ttctgcttaa tttaaaagca gcgtctataa agatttttga
      181 cttctgaacc ctgttctcct ggaagaaaga aggtaacaac gaggaggggg gaggaggggg
      241 g
//
LOCUS       KCLA01001724             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28045upu ultra-conserved element locus uce-4094,
            sequence.
ACCESSION   KCLA01001724
VERSION     KCLA01001724.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28045upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-4094"
BASE COUNT          128 a           76 c           65 g          152 t
ORIGIN      
        1 atttgagaaa atatccctat ctgtccgcat taggaagaac ctgctgtatt tctgagctat
       61 aagaagggga tttttgtaaa gtgttcctca cactagaact tgttttatgt aagaaacata
      121 cttaaaaagc taatttcttt tctcctttct gcactgcaat ccacaaagtg tgattaataa
      181 tagatttaaa tttgctaagt gcatttactc ctttgtgcca tcataaagag aatctattac
      241 tgtaaaattg aggcttagtt ccaaattgtg ccattatgaa gttttcttcc agcaatgttt
      301 tgtctctaat acacttccct cattgtaatt ctattgcaaa cctgatgtct agcatcaagt
      361 ctcacaataa ttattttaaa ttgctactag gaacagtagt cctggtggga tatattacta
      421 c
//
LOCUS       KCLA01001725             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28059upu ultra-conserved element locus uce-5028,
            sequence.
ACCESSION   KCLA01001725
VERSION     KCLA01001725.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28059upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-5028"
BASE COUNT          146 a          147 c           88 g          135 t
ORIGIN      
        1 tttttttttt cctttgtaat agtagattcc agctgcagga ctcctcaact tttcctttcc
       61 cccttcctcc ttctccactg ttcccccttc tccctcccgt ctctccccct tcttcccatc
      121 cggcgtctac tcacgcacac atactctcta actttttgtt tttagtagtg gctgccccat
      181 aagaaatgct gtccaacaga cctggtgcct gtcaccgctt cccatcacat gcctggtaat
      241 taaactctga ctgatttatt gactgacagc caacaaatcc caacccagtt tttatgatat
      301 acatgcttcc ccaggctaaa ttcactcaaa caacagccca gctgaaaagg aggaggaaaa
      361 ggggggggaa atagtgatag agaaaaagcg ctacacacac gcacacacac acacaccaaa
      421 aaatctggta ttggtagatg aaggggagac attttgcaaa gaaaaaaaac ctcagcacaa
      481 catctctttc aaatccagac ttggaaggag aaaggg
//
LOCUS       KCLA01001726             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28075upu ultra-conserved element locus uce-5933,
            sequence.
ACCESSION   KCLA01001726
VERSION     KCLA01001726.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28075upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-5933"
BASE COUNT           96 a           90 c           76 g          126 t
ORIGIN      
        1 aaaggctagg cccttggcta cctccccggc tggccctgca ggaggggctg gcaaatcccc
       61 ccccagctgc ccctgctccc caggagcgtt ccacacaacg gctgtggaag tgtacaaagt
      121 gtcaacctca gcgtagtttt taacctggag tgatagcttt actgatttgc cactttacta
      181 ctcttgttaa tgaattttta atcttcttaa tgacattaaa cacggaaagt aattaaggaa
      241 aacaagtttg aaactgctga cttaaaccct ttattcagaa ctatttaatg tagaattaat
      301 ttgattttgc ccattattca aatgaacaca ttaccttcct gtgcattggc ctcttttcct
      361 tttttattct gtgtgtgtgt gtgtgtgt
//
LOCUS       KCLA01001727             460 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28091upu ultra-conserved element locus uce-573,
            sequence.
ACCESSION   KCLA01001727
VERSION     KCLA01001727.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 460)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..460
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28091upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>460
                     /note="ultra-conserved element locus uce-573"
BASE COUNT          103 a          121 c          126 g          110 t
ORIGIN      
        1 ggagggagcg gcgccacgag aaagcacccg ccttttcctt taagggggat gatcgttggg
       61 cgcgcggccc tcggagcaga tttgctgcgc ggcactacgt aagcgtgagt gatgtagagg
      121 tacttgttta ttatagagca catttcgatg cagtaatcat aaatattgct aaggttgtgc
      181 tccgttgaaa tacgacctac acgctcgtga ttgtttgtgt gccgtgattt gtctggcacc
      241 cattacgttg cgggtaatgg cagccgtttg tcgccgcgca cagcaggctc ttttgacaaa
      301 agaaaatagg cagcaataaa aaagccatcg cccgaatgcc attctgcgcg gcgcggcgct
      361 gccgaggcct cgtgcgagcg tgttaacaac gctctgaact gcctcttgtc agccctcagc
      421 ccctaacggc catctggctt cccataaatc tgtcaaaacc
//
LOCUS       KCLA01001728             932 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28107upu ultra-conserved element locus uce-917,
            sequence.
ACCESSION   KCLA01001728
VERSION     KCLA01001728.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28107upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>932
                     /note="ultra-conserved element locus uce-917"
BASE COUNT          292 a          167 c          153 g          320 t
ORIGIN      
        1 aaatgtgcat gccttgtggc ctagaggaca aaacagtagg atcaatgttc tttttgtact
       61 ctatgaagct tgagattaaa gtccccactg ataaactgaa cattctttaa aagtgaccag
      121 aagcaaacag tgtctgtttg ctcctacttt attagaaaga taccaccgag aatagctaag
      181 aatactattt gatcttaaac aggttgacca aattattgca gttggctcca gtacatgaga
      241 tgctttctgc aaattattgt ttctggttat aaacctttat aatatctcag aatgaattat
      301 gtatgtattt catgttttct tttcttttat cagccttgat gttctcattt caagtttcac
      361 cctagcctcc taataatgca atattgaggc cattcagaca ctaattatgc ctccatggct
      421 ttcttgaaat gactaaatca gcatcagttc tataattatc attagcaagt ttgtatctgt
      481 gcctcgcatc acatgaaaag cacaacttta aatgatttat gaatatatgc atctataata
      541 tcgaatgtgt actttctaat agtatacgta caaaaggcat agagttactt cagacgtatg
      601 cacactcata tatatattct cattttcact gaactttgct gtgtatctta cacagacaga
      661 acccagttgc ataaatgcta atacaatatc gttttcttaa tagagagatg gatgagatat
      721 gtgtgtgatt cagtttgctg gccatttaaa tagtacagaa ggtaagcgag tactcatcaa
      781 gaccagcttt ctgacttgat gatttcctca ttttctttat gattatataa aactctagca
      841 agaataaccg gcaagacaaa taggagtata caaatgcaag tcctctatac tttcatggat
      901 tctacctttg aattattggt gttgtcaatg gt
//
LOCUS       KCLA01001729             983 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28122upu ultra-conserved element locus uce-2729,
            sequence.
ACCESSION   KCLA01001729
VERSION     KCLA01001729.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>983
                     /note="ultra-conserved element locus uce-2729"
BASE COUNT          170 a          226 c          238 g          349 t
ORIGIN      
        1 tgacagcctt acagcctctg tcagcaggga gagcgatgat ctcttcctta aatttgtatt
       61 tccttccaaa attggggggg gtcattattc tatttaattt gggtttggaa gccttgcagc
      121 tgatgtcttc ctccctcacc ctgtcgattt cggctcatta aatagctgcg atgtccttat
      181 ggcaagcagt ggtgatgctc acgggttgat cagtgagtta acgcagttgc ctccggggtt
      241 gcccaaccag ttgtttaatg gcaatggcac gcagcttgtt ctcgctctct cctcctcctg
      301 gttagacctc ctcctcacct tttcgttgag tgctcttgtt gctctgttgg atttctgttt
      361 ctcagtcatt cggtttggtt ttgttgagaa cctttctgta attattttgc tgctgagttt
      421 cttctgcctc tctcttcacc tcctcatttt ttgtcttgca gtcctgttac tctgatcaac
      481 ttctggccag tagattctgc gtgagtactt ttgctgaagt gtgctgctgc tgctgctgct
      541 gctgcatccc ctcacctttt tttgttggtt tctttgttta gctttacata agttcattga
      601 cttctttcct tgttttcgtt ggtgccctct ctgaaggaat gttctgatcc caaatgaatc
      661 cgggaattcc tagcggtgtt taccctgtac tctctctgga gtaggtactt gcattgaatt
      721 aacaggaggt tcggtgcagc cctatcagtg cttcgaagag tttgtcattg aagagcctct
      781 gtttctgaag acgtgtcaat ccctctgttt ttaggcagag agaacttggc gggtgtgtgt
      841 tacgtccagg agtgatgctg ctttgtacct caagttatcc ctgggtttga tgtgcagctg
      901 gctgcacgct cacgtagccc agagctcact ggggatctct ttttagatgg aggaagatga
      961 gtgaaggcag cttggaatgg gaa
//
LOCUS       KCLA01001730             990 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28138upu ultra-conserved element locus uce-7967,
            sequence.
ACCESSION   KCLA01001730
VERSION     KCLA01001730.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 990)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 990)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..990
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>990
                     /note="ultra-conserved element locus uce-7967"
BASE COUNT          310 a          215 c          201 g          264 t
ORIGIN      
        1 tgccatcacc gcgggacaca aaggtacatg acagcaaggg ataacgcaag gcagcctgga
       61 ggaaatcagc aactgtcagc acccacatat gagctataga gatatatatt tttaagcatg
      121 tatttacaca atctcagata tcagagtttg gagctggtca cttcacgctg gcttcacagg
      181 cactgcatga agaaaaaata caaaatgttc tttcctacag agaaaagaca gaggtacaaa
      241 gcacatgcag ccttttacta gctgaatcat ccttcctgta gctggccatc ccctgaccta
      301 gggagttttg tacctaatgt tttcagggag ataattttca cagcatacct cagcttctta
      361 gaatgctctc tgagagcaaa gtcaatccta ggtcactctt ccagtgtagt ttcctttgta
      421 ctaaatccta ctttcaagaa aattcttgcc atggttcagt ggtatttaac ctatcatata
      481 atatccaggt ttactgtgtt agaagaagca gaacagtatt aagcttttcc cacaagcctg
      541 tgattgcatt tgacccagta acctgtatta gattaacatt tattctacaa ctccacagca
      601 agccttggac ctggctgagc agcagtttat agaggacact aaccattttt acaagtggag
      661 caggaaaagg gaattgaatc tgagagagta attccaagca agtatgttgc tgcagtggtt
      721 aaattgttta tacgaggagt tggggaatta catctgactg acctctcttt ttatctgctt
      781 aaaagacaaa gtgcaggtct ccatggcgag tgctaactcc tggggaaggc tgaataaaaa
      841 tgcatcacag caatagagcc tcaataccca aggaggaggg agcccttcaa aggaatgtaa
      901 gcaagttaaa atcaccagga ttagaaaggt tttcaaaaac acattcataa gcatttctgc
      961 ccacaaacca acctctctcc tacgcttgcc
//
LOCUS       KCLA01001731             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28169upu ultra-conserved element locus uce-2350,
            sequence.
ACCESSION   KCLA01001731
VERSION     KCLA01001731.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28169upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-2350"
BASE COUNT          185 a          129 c          115 g          197 t
ORIGIN      
        1 ggcgtatttg ctcagttgta cgcttatgcc tgatttcaat ggtttgatca aggttagatg
       61 ctgagattaa aatagatctt catgcatctg cctgtctttc atcacagctt gcgcgcgtgc
      121 tagttgctcg gctagcgggt tgcaaaaata tagaagtgaa taattaagca ttattccttt
      181 actggcatgt aacagctata atggtatatc taaacaaaca tccccctttc gtgacaattt
      241 aaacaattat agcataatta ggcctatttc aaagttttct taagtaattt gacatgccaa
      301 ccattcgcat ttcaggtttt tattggctga aaagccagtt gtgaaacgca aacacacctg
      361 tcagcaatta aaagggaaga aatagagaac tgttcaggaa ataatatctg tgctaattaa
      421 aaacactagt taaaagcttc ctgtttgttc ctccagttgc cccaaggagt gaccttcccc
      481 ccaacccatt ttttcatacg tcgctaacat ggtttctcca tctccagctt acaatgcctg
      541 taactaaggc tcaaggccag acaatcattt tggcagttag agaagagtta ggtacttatg
      601 cttctatttt tgataacata ctcgga
//
LOCUS       KCLA01001732            1159 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28183upu ultra-conserved element locus uce-553,
            sequence.
ACCESSION   KCLA01001732
VERSION     KCLA01001732.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1159)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28183upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1159
                     /note="ultra-conserved element locus uce-553"
BASE COUNT          343 a          233 c          229 g          354 t
ORIGIN      
        1 aagtttgatt taatccaaac tgttgactgt cactctgtcc atagcatagt aattcctttt
       61 agttttcaaa tgtgaatttg atctaaaaat tcattcccat ttggatctgg acaaacctag
      121 cagatgctgc tgtcactata gaaaagtgca ggctggtcgg aatgtaaaca agaggatcat
      181 aaccattaaa cattgaatgt ttctaggaat ccatgaatgt ttgtacacag ttttgaggtg
      241 atggattcta ttaaaattca ttatagcttc gctggaatta aaaaaatcat aatctttttc
      301 ttagctatta gctctttttc ttttgccagt gctgagcctg acccagtctg tgaagctgca
      361 agttggcagc tgtgattgca gtacagattt cacacagtgt aattactgca gtgacactag
      421 gactgagagg tacaaagaaa aaaagaggcc ctacaggtta ttagcactaa acactgggag
      481 aaatcaaatg gagagtcaat gcgtaatttc gaggcctatc aagcctcatc aggaacagcg
      541 gggaggaaag tgcttcactt catcatctca ctctctgact tttgttgaaa attacagtaa
      601 ttaaaaaaga gctaagtact tctcaggcaa ggggtctttt ctttacccat caccttttag
      661 ttggctgctg attttgtgtg acctttttcc tggctctgtc tatcgcagtc aacacagatc
      721 tttgttgaat agctctctaa aacctaatta ctatctgctg ggtgattcag tattgatcag
      781 aaaaggtggc acagcaaaat aagagtacca gcaccgtggc cccagcaatc gaaaagtaat
      841 tctagcccca tagaagcgtc ccttccatcc cacttattag aagcagctgt gatgttgcca
      901 aatcgataga caacattgaa ttgcttcttt gactaaaaag ctcttttttt tcctcccaaa
      961 gtcgggcaca atcagtggcc tctgacttca aagaactgtg ccctaatgct gtatctgagt
     1021 gaataaatac cctgttggca aatagttctc agaacagagg ggtaagatta aaaatcacta
     1081 tttttatgta gacatcataa tttcactgct ctgcagcatg agatattgct ccaagttttt
     1141 ggctgggcac actgtgtct
//
LOCUS       KCLA01001733             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28198upu ultra-conserved element locus uce-6158,
            sequence.
ACCESSION   KCLA01001733
VERSION     KCLA01001733.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28198upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-6158"
BASE COUNT          116 a          146 c          203 g          129 t
ORIGIN      
        1 ggccccgaca gggagagaag ccgcagcggt gtcccccgcg ctcggtccca agtccgcggg
       61 ggcaggcagg caggcaggcg ggcgggagcc gcattcctgc gctcaggctg ctgcgggagg
      121 tgctttgctt tttccatggg aggagaggag gtttgcgggc gagttgggag agagggagaa
      181 ataccagccg agcaggagct gtgttatgtt tccactttcc tctaatgaag gccccatgga
      241 ggtgcagttg aaaacacagg gtctcctatg cctcggagga gggtgagaac actgcgctgc
      301 ctgctttcag ggccatatgc agcatatggt ggccaatgaa acggggcctg gctccttctc
      361 ttgcttgtct tggcagcctg ctccatggct tgtgttacca gccctggaac acaacctctg
      421 ccaagctgtg tgtgtgtggg ctgctgggac tccgagctca gcagtaacaa atgctcctgc
      481 agctcggact ggggttttta aacgagtttt gtgaaaattt gcacgaaaaa tatcaggagg
      541 ctgttgctgg agcctgcacc agcgagtgct tgcgtgagga cttgggagag tagg
//
LOCUS       KCLA01001734             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28214upu ultra-conserved element locus uce-7643,
            sequence.
ACCESSION   KCLA01001734
VERSION     KCLA01001734.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-7643"
BASE COUNT          313 a          180 c          214 g          278 t
ORIGIN      
        1 tcggagacaa gggctgaatc ctacttgctt tacttgacca agtagtcctg ttgcatctca
       61 ttcagatgtg cagcaccaac gtaaacccag aaactgtctc agatgaagtc accactgtag
      121 ctgcgattag aatctaatca agactgaatt ttgcaggtgt atgtactagg aagaagagat
      181 tgtccaaaac attcatttaa tttgaatatg tataggaagt gaatgaaagt gttgggacag
      241 atcctgctct catttacatt aatgcaaccc cacacagtct gctgagggga gaatgtgatc
      301 tgactttagc acaaactaac ttttacattt gccagattct tacttgctca cagcatgtgg
      361 ccagccagaa atataaatat atcaaatctg tttctaggaa gaatccagca attccttgaa
      421 actttaattc tttgcattac aagaaaagaa ggggtagaaa aaaggggaga ggatgggggt
      481 ttacataaaa gagagcaggt gcggtcgtgc agaagtaact attcagcata tgtaagtgca
      541 gttggaaaat cattgtcttg cagagaatac ttgaaattgg tccctaatgg ccttggtttt
      601 gtcatatggt cttgattatc aggctaaaat tgcattgctg atgcctttag tgtgaacgag
      661 atggatgaat aattattacg tgcgctgaat acctttctgc aaggaggaac caggacatcc
      721 cttggtcacc acagctacca tttcaccttg ctgtcaagaa aactgcaagt gggcaattca
      781 tcacttcctt attgttctta aaatatatgt ttatagtaat aaatgctcag atctgcatgg
      841 aaggcgggca atgcaaaacc tcagtgccat gaggaataat tatgacaccc agatttttct
      901 ggagctaaga caatgcaagc cctgagtgac ctgtttctaa agagcaaaat gaggttttag
      961 tgaataaaac aagcacatat gagtt
//
LOCUS       KCLA01001735            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28230upu ultra-conserved element locus uce-1314,
            sequence.
ACCESSION   KCLA01001735
VERSION     KCLA01001735.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-1314"
BASE COUNT          259 a          254 c          219 g          303 t
ORIGIN      
        1 agcacctgca tggctcagcc aaggccaaca cactgcactg agggttccta ctgaagcaaa
       61 atgcccaagt gtgacagagc actgggaacg tcacctgctg gatgctacga taagccaaat
      121 attttttcca gagcatccaa aagcttgggg aaaggagcag ggttgcagac attctcccaa
      181 gcagcatttt gctgcagtgc ttgtgcttgt gggctcttgc cgcaagaccc accttgtgca
      241 actttgctta ataactctga actgggctgt gcaatttagc ggcttctgag gagctcgatg
      301 ctaatgcatt gattttgctt taatagaatt ttgttgtcaa tggccggtgc tcagcacggt
      361 gcaggcttca atcttaaccc atctgaaggc tctgctcgtt tccagttgag ctccgttcat
      421 ttccagttga ataggttaag caaagacaga cctcactgtt ctcaattcac tttatgatcc
      481 tcccatcata aaaaataata tcagcacctt gcttttcatg tcagaactac atttgagctg
      541 ctattcccta tgcccatgag taaatcccat aaaagccgcc ccgttgtact gtcgctattt
      601 ttccttgtgg atgattgatt gatggatgag tgctgacact tcaatgaagc tatttcgact
      661 gccatctcaa tccgatgatg tgaggggtat attttctgtc catgcctcat tacttcagaa
      721 tgacattcct ggaacttcat ttactttttc cctccttccc tcaagcgcca tattttttcc
      781 catctaggtt atgcatgcca taaaaaaagc aatttgctat tatatgtggc ataagggcaa
      841 cactttccct aggaggtaaa taagaagggc ctttttttct ctcctccatg ttgagtttag
      901 ggatcatgtc aaaatttccc aagcaatgcc acaacaggcc ctgctgcaca ggccgcgggg
      961 aacgctgtga acgggttggt ctgattttgt gagtgctgcc cttcaatccc atcctcgaac
     1021 atcgaaacca gaaga
//
LOCUS       KCLA01001736             238 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28245upu ultra-conserved element locus uce-3976,
            sequence.
ACCESSION   KCLA01001736
VERSION     KCLA01001736.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 238)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..238
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28245upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>238
                     /note="ultra-conserved element locus uce-3976"
BASE COUNT           82 a           47 c           40 g           69 t
ORIGIN      
        1 gctcgctaat ataccgtatc attgataaac ttcttcgtta aaagaaacca ggacaaaaaa
       61 tggtgctggc tctttaaaag tttatcccta tggcaccgtc atgtaagcgt acatatggga
      121 cagtaaaaat ggaagacgac acattaaatg acattattat aaaatgcaat actcttggaa
      181 tgatccctta ttaaattagg ctctatgatc tgagatgaat ttccccgatc cctaatcc
//
LOCUS       KCLA01001737             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28260upu ultra-conserved element locus uce-2769,
            sequence.
ACCESSION   KCLA01001737
VERSION     KCLA01001737.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28260upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-2769"
BASE COUNT          106 a           80 c           44 g          112 t
ORIGIN      
        1 tgtatcattt ctcattcctc agaaaaatgg caataaaagg ctccctcctc agaaatcaga
       61 ctggccacag ccacactcat ctccataata gcacaatttc caattcacgc ttcattttca
      121 ttactgtttc tagccataaa tttttaagca tatgataaaa aatttctgaa gcggcataaa
      181 actaacatga agagggagtt cattagtatg tgaccctaat tagaaattcc atattaactt
      241 cccatttcta cttatgcata tccaagagca aggcctaata cgctggctat cagtccagca
      301 tttgttttaa gagctcttcc tccatttact cctttttatt tt
//
LOCUS       KCLA01001738             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28276upu ultra-conserved element locus uce-4507,
            sequence.
ACCESSION   KCLA01001738
VERSION     KCLA01001738.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-4507"
BASE COUNT          243 a          139 c          158 g          210 t
ORIGIN      
        1 atctgctgta accttacatt tattcaattt aatttcagtt tgagaaggat agcagagaga
       61 tctttttata agcttgtaag gtcaccaaat ttaaattgaa gtgacctctt ttaaggcgca
      121 ttaataaaag tactatgtgg agggaaattt aataccaacg cttaaaatgc atggaattca
      181 gattttactg tcaaacagct caattaaaca aattgaattt ttaagcaaca aaagggaatt
      241 gaatcaaatt agaaacagag cgggatgtga aacgtggacg tttatgagtg atagtcaccg
      301 ggccctccag cactgagtgt tctttatttg ttgcctcagc agttagaggg gttggcaggc
      361 tgcagcacaa aaggataaaa acgttcacca ccgaaacaca gtttttggct cccaataaat
      421 catctgtcac ttcatcacag cccagtagat aatgagcaat aaagttttca cactcaggcg
      481 atgaggaagc agacacaaga aatacagcta aagctgctgc ctctcttctg gggaagagca
      541 aggtgctttg tttaataaat gacctctgga ttcctggaaa tgagtaattc cagcctctgt
      601 acgacaaacc agatgatggt ttaaatagca ggatctgata accttgttta gctcctttaa
      661 tgcaagacgt aatcgcatta tatacatgag cttaaggcat ctctaacagg aagagattcc
      721 agggtattac cttggggttg ggtccctact
//
LOCUS       KCLA01001739            1152 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28291upu ultra-conserved element locus uce-736,
            sequence.
ACCESSION   KCLA01001739
VERSION     KCLA01001739.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1152)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1152
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1152
                     /note="ultra-conserved element locus uce-736"
BASE COUNT          360 a          231 c          200 g          361 t
ORIGIN      
        1 gtttaatgca acagtaaagt tcagttttcc actgactctt cactaccata attttttgtg
       61 ttcaattttt tcctccaaaa gaataaagca ttactctcca tgagtgatag taatctgttt
      121 ctctgtccta gcagggttac attaaccagg aagctctcca cacacgttta tatttcctag
      181 catagaaaag acaactagat gttcaccatt aaaatatatc aatgataaat aacatcttcc
      241 tttaaattaa ctaatatcta cgtttaatga agctcagttt atagtgattt tctggatgaa
      301 gtgctcttct ttcagcctaa ttatgtgcac agctttcaga caacaaggag tgtctttaac
      361 attagataag aacccaggct tttatttcaa tcaatagtct ttagcctttg aactcatgtc
      421 agaggaagac cagtccgtca cattcagttc tacctgacct ctttcttctt aatgcaagct
      481 gccatttaca gaaggaaaac acacagatat tcagcacata agcaagtaaa ctagttaggg
      541 cattttgtat agggcggggg atgggatcct ttatggctgt aaaaatgtgt gactataatg
      601 atgatgttaa aattttcttg tttcctttca ctgggctttg tgtatctcaa aggagcccca
      661 tatggtgctc tttgtccgtg tcattacctc gttacagccg ctgtctgcca gccaaaggta
      721 gaacgctgca gctgtagaca gcgatacaac tggaattgtc taaggtcaac agtgccgtaa
      781 ttactttaaa atgtcagcgt acaataaaat acaacagttc atctggcaga aagcaaatta
      841 gctttgacca tagcgtaatt acccttttct cagcaccatt agaagagatc aaatctccac
      901 attcagtgtt tgaggaaagg ccatcagagt acactctacc tgacaaggat gcacatttgc
      961 cattttgaga tgtaattaat tgtccctata atagaaattt ttatatttga ctctggaatt
     1021 gaaatgtgta ataacctggc ttcttcatat ttaaccattt ccactctgaa tggatatgca
     1081 ttgcaaagtg aaaccaggca gtatcaacac aatgaaacgt ggtaacccct caatcagttg
     1141 gtaaaaaaaa aa
//
LOCUS       KCLA01001740             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28306upu ultra-conserved element locus uce-3455,
            sequence.
ACCESSION   KCLA01001740
VERSION     KCLA01001740.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28306upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-3455"
BASE COUNT          288 a          207 c          178 g          282 t
ORIGIN      
        1 tgcacacatt ttgaagcaat aaataactgt ctgaatcttt atgtgcctta cgttcaaatc
       61 accattggga cactggggac ttaaactggt gaaaatactg tgctctgcag atggttccac
      121 aggttctcag agagaagctt taagttacag ttcgggcttc atgggagccc tactagtggg
      181 agttccccaa gaacacactg aattcccatc actgtaacac gcgtgtgcat gtgcaggagc
      241 ccacaccagg cacaggtaag agaaacaaat caaacagtag catcccccca tcagcttttc
      301 tattatctgc cccactttgt gccaatttcc tccagcttcc ccaacacctc ttgctttgct
      361 cttcttcctt aagacatggg atagggattt gtcaaagtca atgagcactt tattacagtg
      421 agagtgcttc ataatgaaca attcagcaat ttaatgagat tctgtagatc tgtctccaac
      481 ctgtccatca agtttcactt ctataaagca ccctgacact aatcctccgg catacccaat
      541 cttcaccctg ggctgaatat tagattcttc catggtatat tgcattacca ctataacctt
      601 agcaaaaatg atgaacttaa ctacacttga ggcaatatag ctggtctgat ttgatttact
      661 tccactgagc agactatgag ggaattactt atttactaag ataaagcaac aaaacagttt
      721 ctcattgcct tgtgaatgcc taaaccagtg aatatttgtg tgtcttttaa ttctttctgg
      781 ggacccagaa tatttataaa tagatattta gtcctggttg tatagactga attaaaaaac
      841 acacacaggt tttgcctgca ggggaaaact agtttaaaaa aatttggaac agcattagta
      901 acctttagag aggcaattat gataacactt aaatggacag caagggggtt gttgt
//
LOCUS       KCLA01001741            1076 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28321upu ultra-conserved element locus uce-6020,
            sequence.
ACCESSION   KCLA01001741
VERSION     KCLA01001741.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28321upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1076
                     /note="ultra-conserved element locus uce-6020"
BASE COUNT          332 a          211 c          209 g          324 t
ORIGIN      
        1 tgaaagttat tattgttaat gagaattata aaacaatgcc tctgggcacc agaacgagag
       61 atacaccgca aaatgcttat ctgaatccct acatagctat ttgagtttca cgatactttt
      121 gagagggtaa atacttaatc tagcatgtta tttccagtta agtcttgaaa tatctaactg
      181 ctgcaggtgc ctcatagata attaagtagc ttagcgcgat acactaaaaa ataatgaaat
      241 ttttaaaaag gcaataggaa cagatttccc acaacaccaa cagtgtattt tgcacttacc
      301 cacaggagac atctcgggaa ctccagcagt gtaaggacca tccagaaatt ttggctcatt
      361 gtcattgatg tcctgaatct taatgacgaa ctcagactct ggttccacgg gtttgttagt
      421 cagcctatct agtgcttgtg ctcggagtgt gtagtaggcc tgttcttctc gatccagcct
      481 ctttgtagca tgaatatccc ccgtgttctc atcaataatg aaaatggaac ttgccccttc
      541 gcctgacaag atgtatttga tggaaccatc tcctttatca acatcagagt gaagctggtg
      601 aaaaattgat gagagatgag attaacttac agcagagtca gtggcgtgga gatatgtaaa
      661 aataatcctt atgtcaagca gtagtacatg aagttttatt attcttgcaa agataagcca
      721 aatgtttatc atgcacagca tgcaagggac cattagaatc tgtcagctca ctcttttgag
      781 caagataatt tcattctttc ctgcacacaa tctcatttcc aaatgctttt gatatcaact
      841 tagagtcttc tcgtaccaga gttttacata gccacacaca tacacatgta caaccacgac
      901 tttacacctg cttgaaatta actacagtcc gcttcagttt attaccacat ggaaaggtga
      961 tacttaaaca aagtagtgac agtgtgtgtt tgctgcagtg tgtgtatgag agagaacttg
     1021 gatttcctca gagtttactg tgtagagcag gaaattaatc gaattgagtg attgac
//
LOCUS       KCLA01001742             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28336upu ultra-conserved element locus uce-2591,
            sequence.
ACCESSION   KCLA01001742
VERSION     KCLA01001742.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-2591"
BASE COUNT          210 a          183 c          168 g          208 t
ORIGIN      
        1 ctcagcagga ccttcttccc aggaggttcc ttctgatccc taatgcatct atgattttga
       61 tccacttctt ggaaacacca cagtttatga cttgcaggca ctgccagcac cgcacaagtc
      121 gagttatgaa caagcagaag gtagagataa gaacaaactg tgtccccacc agaatctttc
      181 caccggtccc agagcaaaga aggggcttaa tggttaatcc attgtttatt caaaaccacc
      241 accagaagtt aatagacagt tataaactaa ttgagtgcgt ctgtagtgcc atctcctcat
      301 tcatctcgct tattcaattt agctctgtta gcgttccata tggtacagtg cccctgctgc
      361 taggaacagc cattcatcgc aagaaaagcc ctggaacaac agggagctaa tagtttaact
      421 gctcctctaa atttgtttga caaaagtgac atttagcgct ccacgtcacg ttgtcagtaa
      481 tctgcaattt acccttcggc aggcagcgga tgctcatttt atttacctct cccagttaaa
      541 agcgtaatta atattccgct ccggagcgga gattagggat ttgacaaaca gcacaatttc
      601 agttccccag tagagcaaac aaaacatctc tctctctgtc catcggagaa aggacacggg
      661 gagttgggat gacactttgt agggtttaac gctgctaacg tgttcctgct cctggtttaa
      721 tgaggtggga aacacaagtg gtggtgttct ctgggtgtac aggctggga
//
LOCUS       KCLA01001743             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28351upu ultra-conserved element locus uce-3597,
            sequence.
ACCESSION   KCLA01001743
VERSION     KCLA01001743.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28351upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-3597"
BASE COUNT          176 a          123 c           96 g          205 t
ORIGIN      
        1 acacggtgct attgccctag caaaaatcca actgcacata gggttcagtc agaccaacat
       61 cgtgctccca aatctggatc catttccaac gcaaaatgtc agcatgcaca ccttgactga
      121 ctcaaagaac taaaggaacg ctgttctttc ctgtaccttt gctctgagca aatctgcaac
      181 tcttctcctg ccctatttaa cacacaaaca cactatatta tatatacaac acttcctgca
      241 atacatctca gtgagtccac ctagtttaca gctcagaatt tgtttgtgaa acatttgtct
      301 gtacacattt tatattttgt acatttttga tgtaacatat catgtaaata gacagaaaca
      361 gtgaaataaa tcatctgaaa agttttgtag tctttgtaaa gccctaataa taagtatttg
      421 gtgtcatcag acttaactgg atgatgtatt ttctattggt ttattgtttc tctagcttgt
      481 aaaccagctt gcgtatattt ttttgcaggt gtgcacactg tatctgtcta aattattact
      541 ttgccattaa agtggaatta tttattgaat tcacagtctg gtgtttttgc agtgaggacc
//
LOCUS       KCLA01001744             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28367upu ultra-conserved element locus uce-7695,
            sequence.
ACCESSION   KCLA01001744
VERSION     KCLA01001744.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28367upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-7695"
BASE COUNT          195 a          117 c          138 g          180 t
ORIGIN      
        1 atgaaaagaa agacaggtga gtgctcttaa tccagttttt gacattgcct tcctcttccc
       61 aagcccaaaa gtgtatccag aattgtcccc aaactgcaag cacatgcaat aaaaaaacct
      121 ttgccatggc taaggaatgt ggctttttgg aagacactta gctagctggt caacatgtta
      181 aaagaagtct ctctacaggg ggttttgtta agcggtattg gtaagtaata ctagtgtgaa
      241 cacgtttaat agtatgtagt ctgttgcatg gttaccttta aacatcagtt caaattgagt
      301 gaaatgtagc aagttaaggg agcttggttc cttgccatgg caaaataaca agcagatccc
      361 agcagttgac gtcgaatatg taaagctgct ttgtcatgaa gtaatgaagc agttggagag
      421 agattcgcct gttttaaagg aactgactaa cacaagtatc ccgtctatat ctgaatgctg
      481 tctctaggtg taagccgtgg tttcgccttc gtggagtttt atcactttca agatgctacc
      541 agctggatgg aagccaatca ggttgcttca ctcaccaagt ctagatattc ctgaaaatgg
      601 aacaagtctg tacagtttaa aaaaaaaaaa
//
LOCUS       KCLA01001745            1041 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28383upu ultra-conserved element locus uce-3903,
            sequence.
ACCESSION   KCLA01001745
VERSION     KCLA01001745.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28383upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1041
                     /note="ultra-conserved element locus uce-3903"
BASE COUNT          286 a          247 c          212 g          296 t
ORIGIN      
        1 agagaacaca acccttttga gccatctgcc cgttaataaa gtcactgaac tgggttatct
       61 aactcagaac aggggtattc tcataacaga tctggtaggt ttttcccctt tagcaataga
      121 gggagaacca ctgtgccctt aattgattct cttaactgaa aaaattgggg aaatatgaat
      181 tgggagagga gttaaatctc tctcccactc ccttatgctt ggcttaaaac ctgccatccc
      241 cttggattaa ttcatcaatc atgcaaacat tgaccctagc tttttggtca ggagaatatt
      301 aaatgcttag cttaaaaagt aaaagcaaaa tcccataccc caccaaagaa ggacatctgt
      361 ttctaacttc agctttttat ttttttatct ttcatttttt tttgttggta aatctcccag
      421 acaacagcag ttctgtagag agtttaaata tgaaggaatg gcaggacggg ctaagggcac
      481 ttctaccgaa cattaacatc aactttggtg gactgcccaa tgcttcttcc ccttccaacg
      541 ccaaccacag tgtaccaacg tccaacactg ccaccaccga cagcctgaat tgggacagcc
      601 ctggcagctg gatggacccc gcaatcatca caggtaacag tttctcactc cttcagctcc
      661 gctggcaaat catcaaatgg gtatttggca caaactgatt gacatctgga ggaaaaagtc
      721 agtatgcggt ggtctcttcc agcttccatc cacaaaacat cacaggccca ggaatttttc
      781 tggaactgct aggtataaca gtgtcaccta ggcctttgca atgcatgccc atgaccttta
      841 caggcagaaa ggtggatcag tgcttatccc cagggtcaat gtaggtgtcc cttctgctgg
      901 atggcatgtc cggtatgtgt gccgctggtc ctgaggcact gaaggcattc actggacttt
      961 gttatttaaa aagggacata ctccacttgt ttataaagct ctcttttata aggctgtttg
     1021 gttgtgtttc cctagtagaa a
//
LOCUS       KCLA01001746            1132 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28398upu ultra-conserved element locus uce-2975,
            sequence.
ACCESSION   KCLA01001746
VERSION     KCLA01001746.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1132)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1132)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1132
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28398upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1132
                     /note="ultra-conserved element locus uce-2975"
BASE COUNT          283 a          251 c          283 g          315 t
ORIGIN      
        1 gtgcaaggag tcagagagga tgggtgcaga agtctgtact ggcctgggat ggtgtgaact
       61 gggggaaaat atggtttcct gtctccttgt ttgacagtaa aaattgcatg catcgatagg
      121 tctgtataaa gtctggttgg atatagtttg tacacatcag atatgtggag cgtacccctg
      181 tactagagtg taaagagtgg cttgtatcaa caacataaat aaaatacatg tccacagagt
      241 gcgttctgtg ccatacagga tatgctttct gccagtggat gaaaatgcaa atcccctctg
      301 ttgtctgtcc ccttctttct ttggccaaga gcaagggcgc tgggtctgcc gtaacggtcc
      361 atgtcctcgc agggctttct gggttttact cctgtgcact cctcgcttgg ctgctgttcc
      421 atctgactcc aaaagcaggg agtacaaatt aaagaaagaa tgcagctcca acgcctacac
      481 ccagaagctt tcaaaacaga aggctgctac acctgtgggg atagaacaag tgtatcagtg
      541 tcctgggctc tgccccagct cgtccgcctt tgttagctgg aatgtgccga tgaaacaatc
      601 aggtgcagca ggcgcgtggc agcctgtttg aaaactgatt ctttggagac agggagtggg
      661 ctgtgaatca tgcatccaca taatctgatg ataacaattt taaatgtggt gattagtgga
      721 taatggaaag tattgtgtta tttggtatga tttgtctgcc actgcactac ccagcgttta
      781 aaaggtccca tctgctatgc aaatccggat tcattctaag agcagatgca taatgtaact
      841 tcaggagtgt tgaggtgttc ctgtctttct ccctcccacc acacatgcat gcatgtctgt
      901 atacatgttt tcattaccta tcgggtcact gtacctgcct aaaatcacgg ctgtgctgct
      961 gggctgccca acctcactgt ggagcttacg gtgttgattg tgagcactat gggcaaaccc
     1021 agcctcctag cactatgaga gcatctagca gtgcaggagt gccattggga atgtccagat
     1081 ccatctagct gaatatatag ggacaacgaa atgcatcttc atgactgttc ct
//
LOCUS       KCLA01001747             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28413upu ultra-conserved element locus uce-2012,
            sequence.
ACCESSION   KCLA01001747
VERSION     KCLA01001747.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28413upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-2012"
BASE COUNT          292 a          151 c          165 g          315 t
ORIGIN      
        1 taaataaata aataaataaa tattcctctc atgtcataag cattagagtt cttccatttg
       61 acaatatgga acatttaatg taggcccttt catgctttcc tgagtagcat aatttttttt
      121 cagtaaaatt agggagtggg gagacaaatt gcagtaataa gggtctgaaa ggtgtgtaaa
      181 acatatggca aataaagtca ttttccagct accctgtgat attgccgttt cccttagaag
      241 tgttgagtct ccttcataat agaagttgct gagggcttag agtactagaa aatataaaat
      301 acccatggga catattccag tactgtacat taaatttgag gattttacat gtgataaagt
      361 atgtcagtgt tgcttacagg gaattctagt gatacctcag ctttcttgga cttattataa
      421 atcctttgtt ggaattattg cggctggttc aataattcag attagccctc atgtttatta
      481 atgcactaca tctgtgcaaa caacatgtca agcagagagt ttattgtaat tgcctgagca
      541 aacagaacct gaaagaagca atttccagtt acaatgtgct atgacaagta atgaggtaat
      601 tggcattctg tcctgattac ttccaccttc cttttcatca ggtctatatt gtgtgtgata
      661 gatagtttta taagaaatga aggtgtttga taatatggtc tgctgctgct taaggttagt
      721 gattaaagac aatcataatt ttctctctga gatcttatta gctttaacat tatttattca
      781 tatgtgtaag atgtgggccc agaatctctc tttcactact atacatacac ttaagaagta
      841 aactcaacta caatcctatt gaatgcaaaa tatctttgag gtttccaaac tcagacaaca
      901 tgtcaacttt tcctgatgaa ata
//
LOCUS       KCLA01001748             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28429upu ultra-conserved element locus uce-7740,
            sequence.
ACCESSION   KCLA01001748
VERSION     KCLA01001748.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28429upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-7740"
BASE COUNT          254 a          206 c          216 g          309 t
ORIGIN      
        1 tgtttgtgtt ggatatcaga ggttcaatct gtacatgcag atttgttcaa attaagcagg
       61 aggcaccgaa gcaatctgat cagctggaac tccagtcttt atgaaaacaa caccattctt
      121 catggcacaa tatgctggtt aggaaatctg actgaaagct aaactggtgc tttgtctctg
      181 gaagctttgc tgagagagca gtatctaaaa atcctcattt ttagtgccta gctaatgaaa
      241 aaatgaattc atgagcagaa tactcacagg aaatctgggc tggaaaaagc tgtggagtca
      301 atcaatggtt tgtgattagc gtgtacagtg atgcacagtt tctgtcgggc agaagcaccg
      361 gtttacatca tttagctgtt ataattctaa tgaatatgtc tttatttctt tctcgggcct
      421 tctgatgtct attcttcaat tctctcatct ctgaccttca acctttgacc tcacctgcct
      481 gatcagatgg tgtttcctaa aatcaatcat gggtttctct ctgctgatca gcagctcatt
      541 aaacgccgcc tcattaaggt agtgcttcat ctcactggag tctaagtctt ctttgcattc
      601 gatttaccct tttgtcagat gccttctcac agcaggctgt tcatttgaaa atgtttgggg
      661 tgatggctct gttaatgata ctaacagtgc aaaggttgtg ggcatcctcg ctatgagatc
      721 cccgcgtaag atgccatcag tttgctccag cggcttacag tcccgtgctg ggaagtaact
      781 tacgcaccag ttctggtgtc tttgtttaaa gaggaaggta atacgttttg gccactctct
      841 tgaaaatttg tttttacaaa tgaatgggtt caaatcctta agagacttgg ctaacagtcg
      901 ctatagagca gctcccagaa gcagaggcag cactacatcc agctgggtgg aaaagcagtt
      961 acttgcccag ttcgttttgg atatc
//
LOCUS       KCLA01001749             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28445upu ultra-conserved element locus uce-6956,
            sequence.
ACCESSION   KCLA01001749
VERSION     KCLA01001749.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28445upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-6956"
BASE COUNT          216 a          220 c          216 g          250 t
ORIGIN      
        1 agaccgtgca gtgagaggcg ccacgtcctc ttcataaggc ttttgtgtct tcataaagaa
       61 acccccaagt aacttgcggt atcagttgca tgagagttgc tgttgaactt tttggcctcg
      121 aggagatgct gctttgactc tgcgctcccc ctgcccggct aatgaaatta tcacatggca
      181 caggccgggt aaataacaac cacaataact ctcctttgcc cgttgtgtgc tctcactatt
      241 cataattctt aggagcccag atcttagctg cccttacgta agacttaacg aacagtaatt
      301 atcttgtggc caaagagaaa gcccgagcgc acgctaagct gcattatcgc ttggcttctg
      361 acatgagctg ataatcagat tttcttgctt aaatccgtgg cgcttgaaca atgctcccca
      421 ctgtctgtcc tccccgatat tacccttaat gagagagagc agaaacacaa atctgaatta
      481 tttcaaaatc tggtttccac gggcagtgct tggaagggct taactttatt acaaataaac
      541 ctggctttat ttactaatga aatctgaaag gctgggccgg tcggagtggg gagcctctga
      601 gcgcggtgtc gacatgctgg aaactctggt gtgggcaaag tattttgtca taaatcgtga
      661 agtaatggaa ttatggttct ttaagggaat taatacggca gaagggagcc ccggaggaag
      721 ccctgagctg cattcggggg aagaaaccac gcgctgggct ctcgccccgc tcctcgtaat
      781 gaagacttat gcgttgctga gcgccggcct ctgcctctcc gtccgtttga gagtttagtt
      841 tgtcttcccc tctagtcctt tctctttgct agcaacttgt tcctgagcac tcgatgctgt
      901 aa
//
LOCUS       KCLA01001750             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28461upu ultra-conserved element locus uce-4384,
            sequence.
ACCESSION   KCLA01001750
VERSION     KCLA01001750.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28461upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-4384"
BASE COUNT          266 a          105 c          136 g          259 t
ORIGIN      
        1 acaggatccg tgtacttaac ctttagatta taaaatggtc aattttgcat tgagcaacaa
       61 tataaataag tttctgcagc agaagagcag agagctggat aaactttcac ttatacaaaa
      121 cacccagtat ttgtaagtga aaaagcatcc aataagcttg aattttaggg caaaagcgct
      181 aaatatttga gccattccat tgtaacatgg acaattgatg aagtcagttt tctgattttc
      241 tttgctagtt atttggttct gaatctgcca ttatttgtct aagcacagct gaccaagcaa
      301 aactgtgttt taaagtggct ttatgttttg ataaatgtga tctggttgaa aagtattttc
      361 cactgaatgc agagcttaat agaacatgct gacataatag ttttaatgca ttttgttgaa
      421 aatgtgtgaa caaccagaat agcttttgtt ccttcataat tggctgtaaa agtagatgga
      481 aacataacca ttacatatgg aaatgtgtga agagaaagaa ataacatttc tgttgaatat
      541 attaggaatt gcatttccta gtttaaaata agcatctgaa atggatgcat cttttgaaat
      601 tggttgtcaa aataaaaagc tttaagtgga atgtttgtca tattattttt atccggagtt
      661 aaacaacaca attgctaagg gaaagcgtgc aactttaata aatttcattt taatattttt
      721 ttttttgctc actaagcaga gaaatacttc taaaagcact taaaag
//
LOCUS       KCLA01001751             342 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28476upu ultra-conserved element locus uce-6397,
            sequence.
ACCESSION   KCLA01001751
VERSION     KCLA01001751.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 342)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..342
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28476upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>342
                     /note="ultra-conserved element locus uce-6397"
BASE COUNT          106 a           70 c           76 g           90 t
ORIGIN      
        1 taaaagcgac caaggcggtc accacaaaag tctctcgttt gccgctcttc cggtctacac
       61 gtgtgcacac acagccacac agagaaaaat ctcagcctgt tgtcttgcaa gtgttactta
      121 tcatattaat taaaatctgg tgacacgata acatgagcag ctgtgtggga aagcgaggga
      181 aattaacaac cgtttgattt gttgtgttgc taatgtgaca cttattatac aggtcagagt
      241 aaaacaatac ctcagccaaa atatgctaat actgcggggg aactgttgca gttgtaaaaa
      301 cactggtgtt gattataacg gagccaaaga gtgcgttacc tt
//
LOCUS       KCLA01001752             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28492upu ultra-conserved element locus uce-2575,
            sequence.
ACCESSION   KCLA01001752
VERSION     KCLA01001752.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-2575"
BASE COUNT          137 a          112 c          108 g          178 t
ORIGIN      
        1 tcttgcaagt tcccttccaa tccctaatgg ttctatgcag agagagggag gataagcaac
       61 acaaaccacc cccccaaaat aaaaagctca gtgtgggttg ttttgagtct cagatctgtt
      121 tgcaaatgag ccggggggct cccggggtgg gcatggttgg taaatcgtat ttcacttcac
      181 caatgagctg agaaactctt ggataatggg ttatgagttg tagatctgtt tgattgcttt
      241 gtggcaaagt gggaattgtt ttgcaacata gattcttaat cactgaggca tctgtgattg
      301 aatgcgtcga aaattggttg aaattgaaag ttaactatac tgcagacagc ttattcttgt
      361 gtataattga aaataaattt taataactct tcttgaaaag ggctgccagc aggaaatttc
      421 caaccttgtc ctctcctcag cccccttctc caaacccaca gcttcttccc ctgtcccttc
      481 cgatcctttt tcttctctgt cctcattgtt attattatta ttgttattta ttatt
//
LOCUS       KCLA01001753             930 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28506upu ultra-conserved element locus uce-4110,
            sequence.
ACCESSION   KCLA01001753
VERSION     KCLA01001753.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28506upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>930
                     /note="ultra-conserved element locus uce-4110"
BASE COUNT          307 a          201 c          174 g          248 t
ORIGIN      
        1 ttctgcataa aagcattagg aaagcttagt aagtgataaa atcgagtaag agcaagttgg
       61 tcttgtctat gacttcaaca ctagcttcac tgcagtcctc caaaccatag gatgaatgcg
      121 gttttcacac cttagaaaca gctgctagtc cacagacaaa agcaaaccag cctttcaggg
      181 tacgctgaca ctcacacaga cacatcacct ctcatcccgt ttctcaatgg ttcaatcgag
      241 cacgcctatg tcaatacatt tccatataga tcatcagttg tgtctatttc atacatgcca
      301 ggaaaaagaa gcttaaaaac agggggaagg ggtgactgag gaaagtaatt ctcgttccaa
      361 cttgaggaaa ctttagacaa atttgccttt gataatcgac tgaacaagct gcactgcaag
      421 catcaaggga tggtgcaggg atatctagca ggtgctgcag tttatcacaa aaccgtctaa
      481 aataattgga agtgacaacc agcactacca caaatgattt attagtcttt cactcagctt
      541 ttcagcttcc tcagggccag aataaataat ttaccaactc tgtatcttcc aatcattaat
      601 tcttccctgt gcatccaaac tacatttaac tctgctgggt tcagtggaat taaaaacaca
      661 atatgaagac tccccccgcc ccaagtacag tattatctga ctatctagaa gtaaaattgc
      721 caatcagaat ttgtagcggt gatagaatat tagagctaac aactaccatc gagttacgaa
      781 atatccgcgg aataaaatga aagtcaaatt gaagagagat ccacaatgaa atgttctcag
      841 ggggtcaggc atgttctcga ggtataaagt actgatcccg tctgaagata ctgattagca
      901 ttgtttttct gatccataaa ctaacattag
//
LOCUS       KCLA01001754             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28521upu ultra-conserved element locus uce-8030,
            sequence.
ACCESSION   KCLA01001754
VERSION     KCLA01001754.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28521upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-8030"
BASE COUNT          265 a          190 c          209 g          316 t
ORIGIN      
        1 accccagagc agagcaccat atgaatgagg ctgagttgtg tcctccaggc cagagctgtg
       61 acctcccctg tatcagcatg cgtgaggaag tctggccgtg tggctgaagg aaaaatttaa
      121 atgagtcact ctttcaaagg cagcgatgtt tacgaagatg ggtttctcat cttgtaataa
      181 aaattaaata caaattcttc taaatgctgt ctggctttaa caaggcccag aatgcacctt
      241 tccctctcca ccccaccctc tgcatgacac aaacaccgag cttcctaatt gatggtgttt
      301 atgtttgaaa catttttctg atgtctggct ctgtcaagac taattttagc atttctaaag
      361 ctgggtaaaa atatagcctc attactttga tgtcagagca tagtttacta ttagtatatt
      421 ctggggttta tcattttagt catgtttaac acggctgcag caggcatgca ctattaaatc
      481 tggcttattt tacattcctg tccgagatta tttatttgga acaatttcct ctctatcaaa
      541 agacacagct aatgctgagt tttaatgtgt tatttacaca caaaataacc tatttacaac
      601 tcagtatctg ccgcagggag aatgaatggg gcagtgctct cttcatcctg ttgtatctga
      661 gtttaacaat ctggattgct aatagaacca tttatcacag ggtggtaatt tattttatgt
      721 tagctgcaca ggtctccttg cctctgatct atggaaatac tttgtatata atgaagttca
      781 acaagtcatt tggtgtaaac atggggaaac caagctacag aatcagtgag tctggctata
      841 ctttttttcc aggaggtaat ggcttaaggc ttcagttgat gaaatacagc tctttgccct
      901 gcgtgtgctg taagggcaga gtgtagggtt ttctgcagcg gatcagagat tgggatggag
      961 tttggtcact tgatttatgg
//
LOCUS       KCLA01001755             865 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28537upu ultra-conserved element locus uce-2276,
            sequence.
ACCESSION   KCLA01001755
VERSION     KCLA01001755.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28537upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>865
                     /note="ultra-conserved element locus uce-2276"
BASE COUNT          220 a          194 c          235 g          216 t
ORIGIN      
        1 cttgttccag cccagaacac tagtctttgg ggtgtgatct tccttgatgc tttgtgccgg
       61 tgttcaaggg ctccagggaa gccacaaccc atcttgatgg cagcaatggc atctgaagct
      121 tacaaacagg gccaggagca gagcacagct cttgagctaa ggagaggtgc ccctctgctc
      181 ttgagcacag gatgtcagag gggagggacg aaccactcag caaagccaca ataaatggct
      241 gcttaggaca ttactgtgct ccttaagtta atgagaagca agtgctgcca gaagaaaaca
      301 tctcttatct gctttagtgc cacagtgcat cagcttcagc ataaaattta cagagcttga
      361 aaatggggca taaacattat gggtaaattt ggcagaaaat gtgactgact cttatctggt
      421 catgaataaa taattttcaa ttaccagcct gggcgctgct attatcccac acagggaact
      481 cctctggagt ttgttttgtg ctcgagcaca cacatccctg tagtgtgtgg gtggcaggat
      541 gggacttgtt cctgaggtgt gggctcagcc gtggggacat gctgtgttgc tcccttgcag
      601 accacaccga gcgtaacgta gctagaggct gtccccagca tttgcaggaa accgtttggc
      661 cctcacatcc tatacagagg ggttacgttg tcctcaagct agacaaggca aactcgagca
      721 ggcagggttg cagctgctgc ctgcttgtgg ggatagggtc agtttagcaa tgaaaaaagg
      781 tttgtgagct cccatttgtt cactctgcca tgagtcagtg taaaataatg ggctgctgtg
      841 tgctgagcaa ggaaaagaag tctgg
//
LOCUS       KCLA01001756             429 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28553upu ultra-conserved element locus uce-8006,
            sequence.
ACCESSION   KCLA01001756
VERSION     KCLA01001756.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 429)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..429
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28553upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>429
                     /note="ultra-conserved element locus uce-8006"
BASE COUNT          138 a           91 c           64 g          136 t
ORIGIN      
        1 tttcggttga gattaaatat catttacatt gcatcctttt tttttatttc atcagagaca
       61 taaggtcaga attgattgaa tatgtactac ctgcatataa tgatttccag ttttttacaa
      121 tcatgtgcta atgctgcaca gtaatggcct atggatgaag agacagatgt actaccagtc
      181 attcgctaca catttgcatt aacaaatcat catttaattg aagcccatcc aacaagttta
      241 tgctacttaa ataaagttcc tttcaataaa aggtgccacg atgacacacg gttgctaacc
      301 gcaaggtaaa taaaaagtag cattcatttc ctcgtccccg gttagagcgt taacacgtac
      361 ccttattaat ttgtattttg ctcaaaataa accacctgac gtctaccaca gcaatccaag
      421 ccactacta
//
LOCUS       KCLA01001757             996 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28569upu ultra-conserved element locus uce-15,
            sequence.
ACCESSION   KCLA01001757
VERSION     KCLA01001757.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28569upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>996
                     /note="ultra-conserved element locus uce-15"
BASE COUNT          306 a          201 c          187 g          302 t
ORIGIN      
        1 caccccgcta cactatattt tattattctg gatttaaagg aagataacac aattatggtt
       61 aatttgctct tcttctttat atatatagtg tcatgaccca ccatggcttt gtcccatgga
      121 tatttttaac caaaaagaaa tccacaagaa actctcccta aaaattccat taataacctc
      181 ttgtagcgtg tataggttgc agggtctgga actaagaatg ttttaatctc ttcagcaaaa
      241 caatgtctca taatgatgta caggactatt gctgcactga tgaagaatca tacataattc
      301 agcacctttc acttggcacc actgtgatat cctcattagc agtggctcac agtggctgtc
      361 agatggtgtc catgcgaatg caggcattat attgtctttg agatgtgcag ctgcttccat
      421 gacactgcca gtatataaaa acatgacgcc agtttgtttt atttagtgct aaaccttcca
      481 gtttgtaaaa acaaggctga cacagagcct gacatgaggc agtgaaaata attagctctc
      541 attttctcag cctcctattt ccttctcccc gctgtgttct ctttccacta aaccaccaca
      601 tgtcagtcga aatgggaggc aattagtggg ctcatttcag tccccacaac tgtgctgaaa
      661 agaaagtatt tatgatggca caatgaacag ctgaaagatt aaataacatt tgccttttga
      721 aaagaaaatg acttctagct aaatgggcaa tttttgatta ttctcaaaca agcttagagt
      781 agttggtttt taaaatacaa gaaaggaaaa tgagtcattt ttaggtgaaa gaatcaaata
      841 aaacttgaca cagtaatgca aataactgat gttttattgc aaaatatgta aatgtgttac
      901 acccttaaca atggctggtg tctcaggtca gggcaggctg ttgccagcca ggctccagca
      961 agagaaggtg gctccaccgc tggttttgtc tcagct
//
LOCUS       KCLA01001758             950 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28585upu ultra-conserved element locus uce-6183,
            sequence.
ACCESSION   KCLA01001758
VERSION     KCLA01001758.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28585upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>950
                     /note="ultra-conserved element locus uce-6183"
BASE COUNT          263 a          180 c          163 g          344 t
ORIGIN      
        1 gcactgtttg tactgcacgt ggggacaacc acagtgacag atctttggaa atgtctgaac
       61 ttggtttctc aatgactcaa gaactacaaa gaattctcta tggaaactac aatcagagtt
      121 tatcagtaca atgtttcttg ttttccacta ataaacccac ataatccgat tttctgcaca
      181 taccataaat atgcgggagt tttctttctg atggctgaat tatttattga gaggtttctt
      241 gtgcgtggta acactttccc caatgatcac tagccttgcc tctttccttt aaactaacat
      301 ttgtgcatat ttgcatgcat gctggtgcct gtcatgtttt ctgactctac aatgtttgtt
      361 atactttaga caaattcccc agggagatta tgtaaaaaag cctggagagg ccgactcatt
      421 ttatagcgac atgcctcctg gagtcagcac aaactctgcg tctagttcta agaagaggtc
      481 tgcttttctg tcgcattttc agatttctac ctgttccatc acccattatt ccattagtca
      541 gaacatttca ttgttttgca gcaggtttga ttctttcttc tttctttgtg gaatgtctga
      601 aatagcatcc tttgtgcttt gattactgac tttttttgca tgccctgagc tactgattat
      661 tacaaatgat aaacaagtgt ttcagttaat tgaattttca gttagtcaaa ttttcatcat
      721 ctccctgctt gagaattgtt ttcaaataga ctgtaggaat aaatactggc tgaaaaaagg
      781 aaaaaaaacc tcactgtttc ttaatcatgg tcatgtaatc aaagaaaagg aacattgtct
      841 tcttcaataa tagttataaa cataaactgt tagatataag tgttatgtct ttatttgtca
      901 gtgtcattat ttcagagtta acctagactt ttgtatgtgt cgttactatc
//
LOCUS       KCLA01001759             968 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28601upu ultra-conserved element locus uce-5221,
            sequence.
ACCESSION   KCLA01001759
VERSION     KCLA01001759.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 968)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 968)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..968
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28601upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>968
                     /note="ultra-conserved element locus uce-5221"
BASE COUNT          288 a          202 c          141 g          337 t
ORIGIN      
        1 tatttacgtc attatcattc ctctactgag caatgtctgt caaatacatg atgtatttac
       61 ttcatgagct gggtaatgga tgtaccctct tagaagacta gcatgccaca gttataaatt
      121 ccattacaga tcagaagtgc aacaattttt aatacactca tataatacaa ggcttccaag
      181 aatagcattc taaaaatgct agtgttgaaa ggaaaagaga aagtcttctg tatgttgtca
      241 ctacaaacga gcagagatct ttgaccttaa cttatttaac cactgtcatc ctctgataac
      301 aataaaacac agttttgggt ttagtgaaaa tgaaataaag aattgcggct ttttattaaa
      361 gcatctttat gctgagtttg caaaagtaaa acctgttatc ttgaagcata ttaactaatg
      421 aaatattatc ctaaatgaat aaaagaacct tatttcttat gcgctccttt ttggatgcca
      481 tgtcatcaca cttgtcctct ttacccagtt tgtctactgc ctccacagtg aagctgtagt
      541 tgtagttccc tttctttcct ctgtcttggt tgtatccttt cccccatttc agatcttctt
      601 cattccttct cacaaacttg tcaaactcat agtgagctct atgctttcgg ccatcatcca
      661 atcgatgcct ttgtctttca gattcttttt ctcgaaatcg tctctccaaa tctctttgct
      721 ctttgtcact atcattttgt gacctacaga aaaagaaaga aaatccacac aattaacaat
      781 acctgctgaa ggatacaatg caatgtcttc ctttgatttc aacagtattt agaacaatta
      841 tatggcaaga ctgttatctt ttcagtaaaa aggggttcag tgccattttg ctcaatgtca
      901 cattcattta tctggccctt gtctctcctt ctgtttaaaa ttgcagataa agctttccaa
      961 acaaaatt
//
LOCUS       KCLA01001760             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28617upu ultra-conserved element locus uce-2834,
            sequence.
ACCESSION   KCLA01001760
VERSION     KCLA01001760.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28617upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-2834"
BASE COUNT          171 a           73 c           98 g           80 t
ORIGIN      
        1 catgccgcta aagagagagt cagaattaaa aacccgttga aggatgcaca tgcatcacac
       61 tcccaaaagc agttaatctg tataaacgac acttcactgc tgtgagatac aaggggaata
      121 gcatgcaaag cgatagtgat tcgataacac agttgtgaga ctaaacacac acaattcaag
      181 ggtgccaaac gcaatccaca gcagagtgca gaaaagggaa agtatagtac taactctctg
      241 agaggattca attttcatca agtacctttg aatgtcaagc tctgaatgaa gagagatcaa
      301 catgcactgc aaaacctgtg gatcagagaa agaaaagaag ggaaggggag agataattgt
      361 taacagggaa aggaaaagga gaactataga acttaaaaga aaacaagtac atagtggaag
      421 ca
//
LOCUS       KCLA01001761             352 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28631upu ultra-conserved element locus uce-785,
            sequence.
ACCESSION   KCLA01001761
VERSION     KCLA01001761.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28631upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>352
                     /note="ultra-conserved element locus uce-785"
BASE COUNT          114 a           67 c           41 g          130 t
ORIGIN      
        1 ttattttaag aatatttcta aacttttttt caaagggtct aaccttgttt ataattgctt
       61 aaacatttta gccttaaaat ttgccttaag ccttcttttt ttaaaaaaga aagtagtaat
      121 aatctcccta tttgcagtct cttgcctttc cccaagatgt aaataaacca gcgtataagt
      181 gcacttttaa cactgtagaa ataaaaagta actcctctgt actattgttc cagtacctag
      241 tattggcttt ccgattataa aatctatatt ttattaaaaa attattcagt aatcctataa
      301 gaaacactgt cagtgcaatt ctgttgatgc aagccaatct gctcaactcc cc
//
LOCUS       KCLA01001762             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28646upu ultra-conserved element locus uce-2349,
            sequence.
ACCESSION   KCLA01001762
VERSION     KCLA01001762.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28646upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-2349"
BASE COUNT          266 a          154 c          165 g          326 t
ORIGIN      
        1 agattgctgc taatgttctt gttatttcca aaggtaatgc atttactccc gtgtttcact
       61 gtcttttgac cctatggctg cagtagtcac ttccagagtt aatctgaatg taaatacagg
      121 caaaaatcca gtatttatga tgaatttgag aaggaagaag gaactgcttc agcactgcct
      181 ccttttcata cttcatgtct ctgaaagtag ccagttaatt gcattccatg gttactgcta
      241 ttgtaatatg tgcttatttg aagtgcaaag ataatcatca attgtatgct cttgactacg
      301 ctattaatgg tttcaatacc cacattgtgt ttacattttg cttcataact gacacttagc
      361 cattgtggtt ttaacatgta gtaattcagt gagtatagtc tccatgtaat gcccttgcca
      421 tttcattccg tggcattaaa tgttgttttt ctaggaaggt cttgaaatgt ggggcattat
      481 gtatgagtta tgctaatttg ttagggcaat gaatgcattg atttcattag taaatggcct
      541 caaagcaata attatcagtg taggtgtgtc agaagtgatt atgttcagtt ttgccagtta
      601 attactaaga ttttgttcta agggacccat atttgacatc tagattcaat ttagccataa
      661 ataaaagtct gaaatatatt ggtctgaaga aatctagcca agaactctta gaaatttctg
      721 cattttgtct aattgtgact gccaataaga tactaaaata attagtgtca gtgatatgaa
      781 gtttatacta tacctcccaa aaaggcactt cgtaatgaaa atagcaatcg cacttcctca
      841 tttctcttgt ctcaccttat gttacagaat gctgaattat tcaatggcag tattacttgc
      901 tagtgcagta t
//
LOCUS       KCLA01001763             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28662upu ultra-conserved element locus uce-5091,
            sequence.
ACCESSION   KCLA01001763
VERSION     KCLA01001763.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28662upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-5091"
BASE COUNT          162 a          134 c          118 g          188 t
ORIGIN      
        1 tttagtttgt ctatcggtga caaccctttt tatgcattta attcattctc catttctcat
       61 aatcaggaga aaggtgtccc ctaaggttag gagagagctt gtcaaaaagg cagtgtaaat
      121 ttgcagaggt aatcaccagt ctatctcctc tccccactgc ccgtggaact attaactaat
      181 atcactgtct aatctttttt gtacttattt attttgcagc gagaaactag tgttataaac
      241 acccctactg tcaaaacttg tcatcctcat tacctcaagg cgggctccat ctcagttatt
      301 ctaatttcat agtttctcga atttacagcc gctggaaatt gagtacaaaa tccattatca
      361 tttgtatatt ttaattatgc aaatgaggca gctcagctgc tctggccgag acctgcaggg
      421 atgcctaact tcagtctggg tgattacaat ttatccagtc gagtcacttt aattgtaaca
      481 agctaattac attgttccat ttggctttaa caaaagaaaa ggagacggaa ggcgcttaat
      541 ggcaacggcc tcagtgtttc accgtggcga gcgtgacggg agcttgcggt cccacgcacc
      601 tg
//
LOCUS       KCLA01001764            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28678upu ultra-conserved element locus uce-921,
            sequence.
ACCESSION   KCLA01001764
VERSION     KCLA01001764.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28678upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-921"
BASE COUNT          290 a          197 c          183 g          340 t
ORIGIN      
        1 gacttttctt tataagtggg tcagcattta ctcagcaaat gattagagca gatggtgtaa
       61 tttagaatct atgacaaaac ttttaataga taggggttaa cacgatgaca aggagctctg
      121 tgccgttctc tgttcctgat ttctgctttg ccctggggta aaagtcatgc ctgggattgg
      181 attttctagt ctgcacattc catctgagtc acccgaacca cttgtttgaa catcctgtat
      241 gagggatccc cacatttctc tgttcctgta cccttattgt ttttaaatgc aacaattaac
      301 tgagagtggc aggaagacac caaacaggta aatgcagtca ttctgagcag agcttttaga
      361 ggagaattcc tcagtttgaa gaaagtaaca aaggctgcat ttgtgtattt tgctccatgg
      421 agctgaaaat atctagtaaa ttgatcccat gggagtaata aatacacatt actttatctt
      481 gtacttcatg tcctataccc ctgagccttg atagaacaac accacttaat agacttaaaa
      541 aaagagtaat tacagtcatt ggttgtgtga tatttcagcc cttccagccc tgcctgacct
      601 tctaatttag ctcaccgtgt ctaactaatg catttatatt catcttttat gaagcatgtg
      661 tagtacaaaa ttgactttgc agcctttagc aagctgtctt accaggttta ggacctggtg
      721 agaacagcgt actgtatagc acgtgtacat tcacagcaga atcctgcatg catgtggttc
      781 tgatgaacta ttacttttta tccttttgaa aattaaataa gaaatatttt ttccatttcg
      841 ttttcccctc tcttttctaa agcttttact cattgcggaa ttatttacag ctaaacatgc
      901 agacagaaag atgaaagtgt ttttaaaatg attactgcta atgtttctac tgtcagaagt
      961 gcttaaattt tcctgcactt tgtctaaaaa ctgagcactt ttacctttaa
//
LOCUS       KCLA01001765             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28694upu ultra-conserved element locus uce-6444,
            sequence.
ACCESSION   KCLA01001765
VERSION     KCLA01001765.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28694upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-6444"
BASE COUNT          240 a          148 c          148 g          207 t
ORIGIN      
        1 aggtccatag cacctggagt ctgtagaatt cctgagatta tcaccttcta accaaacatg
       61 tcctttaggc acctatgatt aagaaggttg aaaggtaaaa agcaaagagc acagaacagc
      121 attaagcaca gtttgtctta ggctgggttt tctctgtgat gactctgtga ttttgtgttg
      181 aatctagtaa gacacagcgc cagctctgga gggatgagga gcgctctcaa gtatctgttc
      241 tgtcgtgctc aaaaaccaat ggtttgcaac aaaaaatcca aaatgaagat gtaagaggtt
      301 agaccaatgt gacagggtca ttaatttaat agacttcaaa agaggtcatt aggatgttga
      361 ctgaaaatct gccctcctgt cgcagtaaca gcatgaacag ggcagccaca cactcatcaa
      421 catcctgggg ccagcaccaa ggctagacct gttagtagat tcatgatgaa ctaactggta
      481 attgattgtg acatcaatta cgaataatct catcatttta tcagagtagg cttgtcaaag
      541 ttctaattaa gatcacagtt cattcgatgt gcaggcagaa tccacaacac gttatattgc
      601 aataatgatg atcacaaaac agcaaatccc tttttataat ttgaaaatta atgatggtga
      661 ccttatccta tacgacaaag acctctcctt gcctatatat attcagcatt aactgtatta
      721 cataccagag attcatggcg ttc
//
LOCUS       KCLA01001766             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28710upu ultra-conserved element locus uce-98,
            sequence.
ACCESSION   KCLA01001766
VERSION     KCLA01001766.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-98"
BASE COUNT          274 a          162 c          168 g          262 t
ORIGIN      
        1 agttaggtgg tagtagggag aagggaaaaa tgggagggaa aggcaagaaa acacttgaaa
       61 cacatccaga gcattttaat agctgaaaat aaaggcttta gagagataca tgttgggggc
      121 tgaaaggaga attgatacag aaagctaacc tggcatgatt ttaggggata tatctaaaaa
      181 gcctaatcat tgataattca caatttgtga gcctggtggg atttcatgca gagcactagc
      241 ctcactaagg taattggtgc tattgaaaca acactggctc agcagcatgc tgctttcttc
      301 cttgcctctg ggcacaggaa ggatcaatat ttgttaggat tgcttcttgt tccaacaatg
      361 taagatttac aatacttgct aggattctca ctttgtcttc acacaactca tcagtggaac
      421 ccaattacta acctcagaca aacaacatta acatgagcct ctatgcttct ttattgccct
      481 tcatccaagt ctcatttcag ggtcttcagg cagtgccact ataacagata ctacacttta
      541 aagtgtgctc caaggaataa attttcagtc tttcattact cgtaccttga tttacttcat
      601 atcatcttgc cgctatagac aaagataaca cactgtaaat tacagccatc ctgtcttgtc
      661 gtttcaaagg tagggggaag gcagggagtg atgcttttgc actacaatta gcactgagca
      721 ccagagcttc attgctatca tcactagtga ccgaaacttg ttttatcaaa gatgtataat
      781 cattatttta tataaactaa tttcttaaat tgcttcatat ttattttgca ttctgataaa
      841 tgaggaattc tatagtaaga gaaata
//
LOCUS       KCLA01001767             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28726upu ultra-conserved element locus uce-3919,
            sequence.
ACCESSION   KCLA01001767
VERSION     KCLA01001767.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-3919"
BASE COUNT          186 a          111 c           99 g          177 t
ORIGIN      
        1 ccttgaagaa catttcttct tcttcttcta ataaagaaaa aaattcaagt cacatctgta
       61 atgttgtatt tctgaacaag gtgtgcttgt tctaccaagg atatgccaat aattcaagat
      121 aatcaacaga gtacattaca gaggagactc tgaaccgaca ggctgtacaa acaaaatagc
      181 aatctgagga tttaatgcat ttctgatgta catttaaggc attgacactg ggccacagat
      241 gtacatgtgt tgcgttttat cttgttgaga tatggcctgt gagaacctat tatagcacat
      301 tgtcacccac agctactgga cccagcaaag gaagaattcc atcacacatt actccttcag
      361 atacattaga gaaacaaatt gtacttggaa ttgaaaagtc acaggcttat tctgtcttaa
      421 taaattcctg ccaaaaggct aagtgtaaaa ccagaaatac ttcccaaatg ttgttactgt
      481 attatcatct ctgacatctc aagggctgtt caggggatca tctagatatc atttcagagt
      541 tctcacaata aatctttctt tttttaagct gtg
//
LOCUS       KCLA01001768             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28740upu ultra-conserved element locus uce-7223,
            sequence.
ACCESSION   KCLA01001768
VERSION     KCLA01001768.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-7223"
BASE COUNT          259 a          138 c          113 g          256 t
ORIGIN      
        1 tctgaaaaat tttctttaaa tgtaaaaggt aataggcaga aaatgtagtt tgcttacaag
       61 tttcctttat ggttgtttca ctgtcacttt tctgcagatt tacgataatc attcttgcaa
      121 caaaaacatt tacttcattg tctaaataat aaggtaattt gttacagcta attactcaag
      181 tgcttcctta atctcaatta aaagaatcag gctgattttc tacgtttctg cagcagtatg
      241 ttccagaata tttcgttaat gtattcccaa tcacatattt gttaaggaat gcatggtcca
      301 tgcaaaacta aaatgctaaa atacatagct gcaatcttca acaatgattt attgtgacat
      361 gggatgtggg acatttccac agcttttgtg attgcagtaa tgaagctgta aaccaaatag
      421 catgaaatga agcaaggcct tacaatttaa taagctcgta aacagatcta ctgcatcaag
      481 caaatgacat tattatccat ccgaagtaaa tcatgctaat ctcaggagat aaaatcaaca
      541 tcattaatgg tcacatgtca tattcatcaa cactaaacca tcccttttga cagattaatc
      601 ctaactacag ctcccacgat gtatggtaat agggcttgta gcatacattt cattcagcag
      661 taaggctaac cagcactctt agtctgctat tacaaataat ttttttattg atttacatat
      721 tttaaaattc atttaaggtg aggtaccatt aaaatcctgt cactat
//
LOCUS       KCLA01001769             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28755upu ultra-conserved element locus uce-3407,
            sequence.
ACCESSION   KCLA01001769
VERSION     KCLA01001769.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28755upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-3407"
BASE COUNT          258 a          157 c          157 g          284 t
ORIGIN      
        1 ttttggtact agcatgatct acaggctcta cagccactgg tatccatggt agtatttgga
       61 tctgtgagca ggaagctaag caccaatttg gagagcacat atactcttag aaaatacagg
      121 agatttattg tgttgtctga tacatggcct ttaacatgga aatacttaat ctctgcacag
      181 ctctgtattt ttcccacagt gatggcaaaa gctttgcagc tgtgcaggtt aatgtgttcc
      241 tgtttgtcca ctggcattta agctggagga tacacagcat tcttcaaagc ttgattggca
      301 aacggaacta aaatgtgttc agcactaatc ttctagtcta ttactacttt cagaatctac
      361 acatatttta caaaattctt tagaaagaaa tgctgtcaga gcaaatgatg catcaaattc
      421 aaacaggcca tcaagattgc taatggattt taatagcagc tattacagca taatggtatt
      481 ttcccaacag ctgtttgttt atgaaatttt cagtttacaa gacctttatg tccaatccca
      541 ggagacatta ctcaattcat ttataatcat ttggttcaac ctacacataa atgctgtcct
      601 attcgcattg ggtgtgtttg catgtaagac gtgagcaatg aaaatgatga agagccttac
      661 aagatgaact aattagtaca tatcctttga cattagcagc agataagtgt ttaatatgtt
      721 tcttattctc atttctgaat agctcattgc cactgaaaac agctgcctgg gttatagcct
      781 atttatgttt caatctgaca taggaggtct tttcttaact acacctgttt gagactttga
      841 aacaaagtat tagttg
//
LOCUS       KCLA01001770             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28769upu ultra-conserved element locus uce-2576,
            sequence.
ACCESSION   KCLA01001770
VERSION     KCLA01001770.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28769upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-2576"
BASE COUNT          170 a           99 c          132 g          141 t
ORIGIN      
        1 ttttaaggct tttcttgctg cctaatccct ttaaatgtac tgtatatcac atttatgaaa
       61 tgtattggta ccagaaagga gcagacgact ttgtttttaa acaaagaccc caggataagg
      121 ggcaatgttt ttcccctcac aggtgatgga gtacgtacaa agaatgcggc ggataatggc
      181 agtcctgtcc tctgaacaga tggtgatggt cctgttgcta ggataaggcc tgaagaattt
      241 agtttttaat tccacattat ttgcctcagt gccatgaata tccctaggtt tcctcaggca
      301 aaaatacaac aaatacacag aaagagaaag agaagtgaca tgcggataga aaaggagaca
      361 gagcacggga aaggactgga gccaggtcaa tagaagcttt tgggaaaatg tctgctcagc
      421 tgtctacgat cacctgggtt tgaaaagcag gcaggaagga agattggttt ggcatgagaa
      481 cgaggccttt gatgctttag ataccacaga gaaaaatacg cagttcttcc cattagaagt
      541 ct
//
LOCUS       KCLA01001771             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28785upu ultra-conserved element locus uce-6185,
            sequence.
ACCESSION   KCLA01001771
VERSION     KCLA01001771.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28785upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-6185"
BASE COUNT          271 a          138 c          201 g          183 t
ORIGIN      
        1 gtcggagtaa ggagcccatg tggggtgata acattttttt acttttattt ttttatgtta
       61 ttattcactc tttcgtggtt ccccctgctc ctggaaagaa cagagggttt tattgctggg
      121 gttaaaaaac acgaatttgc attacatcct ggctcccgct gtaatacttc agtcttgttt
      181 ctttctcgtc ccctctccag aacaactgat gctatcacag cctgatttaa tttcaaagac
      241 ggattgtgat ttggcagtcg gggggaaaaa aaaaaaggca agctaatcaa aagtcaccat
      301 ctgctgcgtt gccatgggga tattcctccc caataaatgt gctctttgcc aaaatcacag
      361 ataacagcac tataaagggt gggaggtgga ggggggaatc aaagaaagaa gttccgacac
      421 taggggggaa aaactgaaga gagaaatgag agagaaacaa gagacacaga agaagtgaga
      481 gagaaaggag catggactac tgaggcaaaa tgatgaatgg accaactggg gagaaggagg
      541 aggaaatcag agactaacaa gcagctgaag gtgacaaagt gatggaagga gacagacaag
      601 tggaaaagag gaaagaagag agacatctct agacactctg ccacataaga tatcaaaaca
      661 aaacaagcag agataagaga attgtcctca aagccttgtt tcagaggaag gggagaaaat
      721 tgaagcatca gtgagatctc ccaaagaagt tgattgcagc ttaagagatc ttacctctat
      781 ttgcattgca gtt
//
LOCUS       KCLA01001772             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28801upu ultra-conserved element locus uce-937,
            sequence.
ACCESSION   KCLA01001772
VERSION     KCLA01001772.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28801upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-937"
BASE COUNT          248 a          199 c          220 g          254 t
ORIGIN      
        1 ccaaaagtcg ggtagcgata gtccctcatc atctttagga ccgaattccc tgtgttccta
       61 tcgtgttgat agttagggga ttttcccttg ttttgaattg tttgtctctc caaaaatgac
      121 ctagaaaaga atctgttgtt catcacatat caacgaggga gggatgatta gttaatgcaa
      181 accatgcctc gtttctgtgg accaactggc taactctggt tctcagtgcg tacggagtct
      241 ctcggaagac cgttcccatc cttcagtgat gtagctgcag ctctccctga ggaatgagaa
      301 gttcactatt cactctgtgc ttgcatcacc ctttccaaca tgttcccact gatacattaa
      361 aggaattaat tgctcataat gatctcacca tctgttaaca gaggttcata cctacaggct
      421 ggtggcatgt ggtggtccta ttcaggaatc aataggcaat gctgggggaa cgctttccca
      481 cattgccttc cattgcgctc tgaaaagggg aggagagctc agtgttggcc atctgctcct
      541 tgtctttctg tgcgagagac cttgatgcag tccagcctgg ctctgatctg actccagtct
      601 gattggaatg tggctgatct gagaggctct caaagctgtg aaagtgagtc aaaaggagat
      661 ccccattgtc cggcagggct gaaagaaaat gatcacttta aaattcataa ctcccaggtg
      721 cccgccatct attcatggga aaaactctct gaacttctct tcattaaaaa gagagcgagt
      781 ccagctaaaa agagagaaaa ggaagtagtt tgtgggaaat gtgcaaggga tttcaggcta
      841 aacaaatgag gaatttggaa ttttcactcg tattaaagga accgtggaag gaaagggaag
      901 catttgtaaa agcagggcct c
//
LOCUS       KCLA01001773             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28817upu ultra-conserved element locus uce-3884,
            sequence.
ACCESSION   KCLA01001773
VERSION     KCLA01001773.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-3884"
BASE COUNT          254 a          237 c          196 g          235 t
ORIGIN      
        1 tccctcatgg tgacctgagc agaagacagt cctaacagaa atgaagcccc atgatgagct
       61 cttaccatct gatgtggtcc ttaccattca cgttgacact tgtacagaca caagtgagag
      121 caaaataaca gtgatgcttg gcagagcctc ctctgcctgg gcttcagctg caggtaactg
      181 cacagctcat gcctccatgt agcaaagaac tagccccttc ccagtgtttt attcacagag
      241 agggaataac gggaatggga agtctgctac caattgctac tcagatcata aattcatcat
      301 aaattcatac gaacagacaa aacagacagg aagaaacaca tacatgttct gatgtgaagg
      361 caaccagcct gggaatagct gccattcctt tttctttcac ttctgggaac atcttgaaac
      421 gtgcaatcaa catagcatac atgttagata tggcaccacc tggagtccac agtaatacac
      481 tgttattttt tctaggcatt gtcagagcat tgcagaacaa acgacactct tgatagactt
      541 ctctaatgct aacggctctg ccttaaggca caatggattc ctcttcctga tgctcctcac
      601 tgctggactg tgtaataacg ggatctacta cacccaggta acagatagtg ctgctaccaa
      661 aaagggctgg ggcttccttt ctgcttcggt tttgctccta tttctccctc agtcgtgtct
      721 ttctgtatgc caccagcatg taatccccac caccctaaca cgtgccaaca caaggcaact
      781 tcctaaggtg cttctgggtg caatggcacc ctctcccaaa tcagggtggt gtttcactgc
      841 ccagccctga gggaacctat tctctggata cctggagtag ggaaggggag agaaaaggga
      901 aagggtcatt ctaacattca ct
//
LOCUS       KCLA01001774             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28833upu ultra-conserved element locus uce-7972,
            sequence.
ACCESSION   KCLA01001774
VERSION     KCLA01001774.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-7972"
BASE COUNT          207 a          239 c          174 g          242 t
ORIGIN      
        1 ggtggaggag cgggaggggg tgggaggaga ggtctggcag tttataggag aaggcaactc
       61 agctccctcc acatgcattc cttcctccct atctcccaac gtctttgcgt gtgtcttgtc
      121 atattttctt cagctgttaa ctgcctggat tgcgagattt taaacacccg cagtttagga
      181 aaagtgaaac ctgtctaagt gactatcgca gcctgtcagc ttcacactgc tgggtaaaat
      241 tttccagggg aagtgctctt gtgatagttc ccgagtctct aagtcaccct ccctccctct
      301 ttccccacca cacacactcc ccttgaggcc tgaatgcact tgtggcaata aaacattcat
      361 gcaacttgga attttaacac aatgccattt ccctagctta acctgaaagg aatgcactag
      421 tcacaacaga ctacatcatc ctgccattaa gctctgccaa ggaaccactt ttttggctgt
      481 gctggaccag ctctgacggg aaaggagtac acagacccac acacagagca cagaggggcc
      541 acctctgctt cctcaggctt atccagcaac accctgctct taaccatgac ccctggtctg
      601 tttcagcact gtgacagccc tgtgatgcat gtgtcacttc aggacttctg cagagtcaca
      661 acactgagca ggcaactcca gcatttcact gacttgctgc tctgtctcaa caggcacttg
      721 atcatctgcc agagggtggt tggttttatt tttttttaca ttttccagct ttttttttta
      781 aacatacaca ctattgttac ttctgaatgt tttctgttga aatccacaga cttccccctc
      841 acctatacaa cctcccatga aa
//
LOCUS       KCLA01001775             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28848upu ultra-conserved element locus uce-4314,
            sequence.
ACCESSION   KCLA01001775
VERSION     KCLA01001775.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-4314"
BASE COUNT          199 a          151 c          127 g          211 t
ORIGIN      
        1 tttttccccc cctttgtctc cttttcttct ctgccttgta caacttagaa tccttaccta
       61 ggaggcaatc tgaaacacca ttttcccttt cctaacaaaa atggagactg ttctagtgat
      121 tatctgccat ctgttgattt cagtacttca attgcttcag aatcctctgg aaaacaactc
      181 tttctcaata gagggttgaa tgtacattca aaggtaactt cagctgagca agtgcccagc
      241 taatcccctt agcacacagg gacaaggctg ccaccagctc taattgattc tgaaatgaat
      301 ctgtatagga aattagaagg tttggattcc catgtgagct tcaatagaga gccaggatgt
      361 aagcctgaca gctgaatgga ttcagaaatt aaaatctgat aagcagctta aaattgtact
      421 taagtccaga aattatttga atgctcttgt taatgacaca ttgtgtattg tcacctagtt
      481 aattatcgct gaagaagagt tcttgcagag gggaagatat gccagccttt cacagccttt
      541 tctcatcaca tatttattaa attccaccct cctctccagt agctggaagg caaaaagaaa
      601 ggattaggcg actgcagttc ctctgtggct gtcagttcac tgtaccaaac ttcaaatatg
      661 aactgttgca tgtactgtca cagacatt
//
LOCUS       KCLA01001776            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28863upu ultra-conserved element locus uce-2054,
            sequence.
ACCESSION   KCLA01001776
VERSION     KCLA01001776.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-2054"
BASE COUNT          402 a          240 c          185 g          347 t
ORIGIN      
        1 caattatcct cctttacaaa tactaccggt ctcaactcct gatttcacac agtcctgcag
       61 actgcaactg atttcataca tcctgtggta aatccagcac cagatactgt gcagggacag
      121 aagtttagac catacctgtt ccctataaag acaaacactt ccttcctttt gtttaataag
      181 ccacacacga aaacaccttt ctactatatg gcattacttg gaagacacag tctccatgga
      241 atactgttca aaaaatatct gccttaattt tctctcattt tagaataaag cttgcatctt
      301 taactccatt tttgacaccc atgtgtgtaa cagacatgaa gcgtggaagg catcatgaat
      361 agatcgtaaa acaaatactt tgaccaaaac cacagggcat tctacgcctt caatcaaacc
      421 atagcaatta atatgaaatt ctaaatacag aatataatgc cacataaata gcataccagc
      481 caagtcctgt ctaagaagcc atatgttttt tcccattgtt caaaaaaagg agatgacttc
      541 ccgtcactta tgtttctgat tagcaaggtg atttatgcca caatcactaa aaatgccagc
      601 aagtgaatga gaaaatgcat agtgactgca ccagatgtgc acaataaaca ggaatcccat
      661 tgtaatctct ggtacttagt ttatatgaag gtaatgtaag aaacactctt ggatatggca
      721 aagtcactct ttttttacat ttgactataa atgatatgaa ataaattgtg tgttttatac
      781 tttatggcat gcatacattg ataaattagg tacagttttg tatcccgact tatctacaag
      841 acaaacctgg ctaagatcat ggggattaat tgcttcagaa gtgtgaaatg cagcttttcc
      901 attcttttct gcacactcag tgaagaaaca atgattaatc actgtttaac tattctcttg
      961 aggatctaca agattgccaa agcaggactt atcctcataa atccaaaaaa cacaggttta
     1021 gatttgttgc caacaactga aagaacatga acttaaagcc atttgttatc agattaaaac
     1081 aatgtcaagg ctttagaacc ccctaccagt gcaaaattcg ttttaatctg cacctaacaa
     1141 agggaattgg attatcaaat cagattggag aaga
//
LOCUS       KCLA01001777            1194 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28891upu ultra-conserved element locus uce-1469,
            sequence.
ACCESSION   KCLA01001777
VERSION     KCLA01001777.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1194)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28891upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1194
                     /note="ultra-conserved element locus uce-1469"
BASE COUNT          364 a          217 c          230 g          383 t
ORIGIN      
        1 acttgttatt atgagagggt acagagcaat agggtttgtt attccttaca ccaaagtgct
       61 gcttcaggaa gttaaattat tttattctac tgcatgtgac atgtactgtt ataacaaagt
      121 gccttgctac gggaggaatg gagtactgta cacagctcca gcaaagagaa tgaataattg
      181 aaatccagtg cttttatgct tcactgaaaa aaaacaatct ttcagggcac agaaagttat
      241 tcagcttatt tgcattaagg ttgagcgatc accactgacc aaaacagaag cagtgatggt
      301 actttgatgt aagtggcaaa gaacattcat aaatattctt aggaagcaag atgtacctgc
      361 atttaatcag tacttattaa aattttattc cctatagtta ttcaacagga tccgtggtat
      421 aaaaacataa ttacaaaaat cagatttgag ctcatttgac aacagaagga ttttatggtg
      481 acctatctcc aaatgttcct atttgtaatt aaatgcagtg atcagcagta aggattttga
      541 agctgtttta gtagttccgc tattctgctt aacatgtggc acccgtaata attaaaatga
      601 tactaacaca tgcacaattt tatggccctt atggtgcaac ccattatgcc aaataagggc
      661 ctctgttttc acagcatact gcacatggtc tcattacacc cacttttctt ttcctgtctt
      721 cacactaaca actgttaaag tgaatcaaca cacgaaacgt actataacag cttagtgttt
      781 atgatatgtg tgctgttagt cagtgaacag gaaaatctaa acatttactg tttatgtaaa
      841 gaatagcgtt agtgttagcg aatcacttgg gtctgcttac tttattatct ggatcacaaa
      901 cgtgacggcg ggtgtcggtg gtacctatat cctccctttg ttttgatctc ctacgtggat
      961 gtgcctaaga agtagagaaa tggcacattt gtggttggaa agttttgcct tacgtagatt
     1021 tctttctgtg ttagagtggg agaaaagtat tcctattgta atctcccacc ttgaaaaaat
     1081 aaatccatat agtttctcct caacacgttg tgcttggatg agtttggttc atccaagtca
     1141 ttagaaagtt acaccatttg cctgcggcac ctcaggatat tctataagaa gctg
//
LOCUS       KCLA01001778             879 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28906upu ultra-conserved element locus uce-5719,
            sequence.
ACCESSION   KCLA01001778
VERSION     KCLA01001778.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28906upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>879
                     /note="ultra-conserved element locus uce-5719"
BASE COUNT          298 a          146 c          196 g          239 t
ORIGIN      
        1 aaattaatac tttatctttt tatagatgtg acctttctaa cagaagagaa gatatatgaa
       61 attcttgaat tttgtcgaga gaaagaggat tattctcctt taatcagagt gattgggaga
      121 gtattttcta gtgctgaagc actggtacag agtttccgaa aagccaagca gcacactaag
      181 gaggagctca agtctcttca aggaaaggat gaagacaaag atgaagatga aaaggaaaaa
      241 gctgcctgtt cagctgctgc tatggaagaa gattcaggtg catcatcatc ttcatcatca
      301 agaataggag ataacacaca gggagataat aacctccaaa aattaggccc agatgaagtg
      361 tctgtagaca ttgaagcagt cagacgagtc tatgatagat tactttctaa tgaaaaaata
      421 gaaactgcct ttttaaatgc acttgtgtac ttgtcaccta atgtggaatg tgacttgact
      481 taccataatg tgtactctcg ggatccaaac tatctgaatt tgtttattat tgttatggag
      541 aatggcaatc ttcatagccc agaatatctg gaaatggctc taccgttgtt ttgcaaggca
      601 atgagcaagc tgccccttgc agctcaagca aaactggtca gattgtggtc gaagtacaga
      661 gcagaccaaa ttcggagaat gatggaaaca tttcagcagc ttattactta caaagtcata
      721 agcaacgagt tcaatagtcg taacctagtg aacgatgatg atgctgttgt tgctgcttca
      781 aagtgcttga aaatggttta ctatgcaaat gtagtaggag gggatgtgga cacaaatcat
      841 aatgaggaag aagatgaaga acccatccca gaatcaagt
//
LOCUS       KCLA01001779             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28922upu ultra-conserved element locus uce-5025,
            sequence.
ACCESSION   KCLA01001779
VERSION     KCLA01001779.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28922upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-5025"
BASE COUNT          234 a          122 c          120 g          268 t
ORIGIN      
        1 tttcttggga atatggtctc tagaggataa gggaggagaa gtggctttta gttaatgatt
       61 ttccctcttc taacaaagag aaaacatctg caatgttctt ttgacccatg tgaatttctt
      121 caaggggagt gtttgactcg tcaagcttcc tctttcaaat atatttttta aagttgctgc
      181 aggttcgtaa taatttagta ggataaagaa gtcattacta ctgcagtcct ttttgcttca
      241 attagtattt ctaatcacat tagacatgtt ttcagtatcc agagaggatg cctagtccct
      301 acagctatcg tgaaccatta actttaatta aaatttacaa gtctaatgtt gttacatctg
      361 ctaaaagcat taactgccat gttaattacc aaaatgttaa tgttgcgtta aaatatgaat
      421 gttccctttt gacagttcat ctatggttta attatttatt tttggcagaa tatttcctaa
      481 aaaaagaaaa aggcgtaaaa gcataaatgc tgactgaaat aacgagacat catgagaaag
      541 aaatagaaac cttaatacat tatcagttgt tagtggaaac gcatttgtat tccttgcacc
      601 taaaataaat acatgacatt tgtgttatgc ctaatatgtt attgcacatt ctttttctat
      661 tactttgtag gcatatctca tagttctaaa atctctgtag ctcatcattg tcattgtttt
      721 ggccctacaa taaaatactt tccc
//
LOCUS       KCLA01001780            1025 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28937upu ultra-conserved element locus uce-6555,
            sequence.
ACCESSION   KCLA01001780
VERSION     KCLA01001780.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28937upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1025
                     /note="ultra-conserved element locus uce-6555"
BASE COUNT          310 a          175 c          221 g          319 t
ORIGIN      
        1 gcacggcaag aggcacatga gggaaaggaa tccaatatat ttcatgtctg ctcctaagaa
       61 cttgtttctc tctgaggaaa gccagttctc gaggagtttg ggagagctgg gggctgtgct
      121 tggggaaaat aaataaaccg cctgcagtcc tgaactggga tgtttgattt tttttatgtt
      181 gccagagctt aagcgagctg catcgctccg tgatcctgaa ccgctccagt gtttattgac
      241 ggttccaata aaaaataaac ccgatgttta aatcctgtct gattagtgaa aacagaaatg
      301 ttcagggaaa agtctgaatt agttccactt tgtaacagag taaatagcag atttcagcct
      361 tgtttaaaac aaaaggtaaa tctcataccc agaatccagt gtgtctcgga aaatgatttc
      421 cttggaagta taaattggga tgccggtgaa gtttcagaac aaaacgggta tttttctact
      481 ttgttcattt catatttatc actagcttgt ttgctaattt tcatttgcaa gaggcaattc
      541 ttccagctaa ctggctgcct caatgggcca ctgatttctt tgaagtgaca gtctgtaaat
      601 atgcataaaa aagagatgca attagcgtgt gtgtggttca gtgcagcctg atttcattgg
      661 caagtttacc cacagtgttg ataagctaca ttatctagaa aattggccgc tgaaaaacag
      721 cacctctgat tgccagcaaa ggttccagat aacagggtgc tgaagagaaa tataattgag
      781 gttgaatatg ttaaccaagg tgtcacatgc tccttagaag cgctaattta tcagcatgtt
      841 ggaattttta ttaacatttg gaatgcattt ctaccacact aatgaagtgg aattggcagt
      901 tcaggtttta gttattgtca tttctgagaa gttaaatgta atttctcgtt agacacagtt
      961 atgtaaatat atttgttcag gggctgaaaa aattatacat ttcacaaaat acaaatatgt
     1021 cgtta
//
LOCUS       KCLA01001781            1041 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28966upu ultra-conserved element locus uce-7237,
            sequence.
ACCESSION   KCLA01001781
VERSION     KCLA01001781.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28966upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1041
                     /note="ultra-conserved element locus uce-7237"
BASE COUNT          304 a          225 c          211 g          301 t
ORIGIN      
        1 gaccaggtaa ttttgctttc ctgtcatctg tatgatggcc acgatgtgtc aaaccccgca
       61 ccagtacagg agggcatttt attagctgat aagctggacc actattcact gaggaagaag
      121 attatcaaac aaattacagc gagacccaat agaaggggaa aggttaatga tatctgtaag
      181 ccacctaact cctccgcccc ggtagtttac taagaaaatt agggtttctt cgtgctgagc
      241 ttgtgggaac actctaccca tatttcaacc cttctgtcca tcgagatctt tgacaccact
      301 gctttcttgc tggaggattt acattaagga caattataaa cccccccatt caggcaaata
      361 tacaactcct tatcagaggg atggggatgt tcttcttgcc agtctacaga cgtggagatt
      421 aaatttcaga gagagattta ttttgtgcta ttgtcctgcg attcaccaga ggattgtgca
      481 aagcaagtaa tctgatcaga ataatgcata gggacatatt tcagaaaacc aataattgtg
      541 ggaacgcgga gccctgcgag gtgccaacat aaagtccaac ctcgctcttg ctcctttcca
      601 caattcctta atcatggcat cagcatgtgc tgctctgctg gccattaaag gcacaaggct
      661 ggagtaatca atgccggaca tcgggagatt tatagggaat ttagatctac agcacttttg
      721 caggctgaaa agcaaaatta tattttatag gggtgccata tcttaggttt tacagctttt
      781 acctcttgaa gctgcctttt gttgtaggct tgaggggttt tctaatctgt aacctgactg
      841 ctgcagcttt tttatgatgt taggaagcag ttaaggagaa caacagaaaa aattactcaa
      901 aggcattgta tttaaattgt gtttactccc ttcacctttg gacttcccct agacaaaatc
      961 tttcacaaag aagtcccaaa caaaatcatc ccttatttta ctctccttaa accctcatgg
     1021 aataagcaga aatcgtaacg a
//
LOCUS       KCLA01001782             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28980upu ultra-conserved element locus uce-2369,
            sequence.
ACCESSION   KCLA01001782
VERSION     KCLA01001782.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28980upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-2369"
BASE COUNT          218 a          216 c          203 g          241 t
ORIGIN      
        1 tgtttgaata tttgtcatat cccacctaat gcagtacccc agagcctacg atcccagtgc
       61 aggcttggtg cctgctcttt gacaagtggt agcctgcaaa aatcacctcc taaatttaat
      121 acatttttgt ttcacaaagg ggctctagag gcatctttca ggaggctcca gctccagtcg
      181 taattattgg cgatgctaca tgacaaagca gcgcttgcac caacccaaca tggcagctgg
      241 cactggggtt tcagggacgc aaaacagccc gaatgccaaa aagatgaagg gaaataaaaa
      301 tcgatttaag caatttttcc ctctctatag gaacttagtc tgtcagcaac ataaacactt
      361 gcaatcatgc acttcctagg atgcatgtgc tatcgaaaag ggaggtgtta attgctgtgc
      421 taattacaac atgattgctt tgcacttgtt ttgcacttgc aggtgattaa atttttaacg
      481 aagcatatta cttggcactg ttagcacagt taacacattt ctctctctct ctctccccct
      541 ccaccccttt tctctgtttt ggtttttttt tgctttggga gaagtccctt cgctgactgt
      601 gatgtgctgt tgtgctggaa caagcccctg ctcaggctgc ggctccctgc ttgcacagag
      661 cagccgcctg ccatcagcca cctcagcatg acggcactgg ccagatgtga atgcaaaacc
      721 caccgaggta tcagctaaaa atgaagcgag gctgtagtgc cagtctccag gatcccattt
      781 aaagctgcgc cagctcgagc cagtcgagtg gcagcagtgg agggtgtgtg ggaaggtggg
      841 aagtgacagt gagttcccaa tgatttattt ctgctctg
//
LOCUS       KCLA01001783             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 28996upu ultra-conserved element locus uce-5379,
            sequence.
ACCESSION   KCLA01001783
VERSION     KCLA01001783.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="28996upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-5379"
BASE COUNT          217 a          249 c          277 g          250 t
ORIGIN      
        1 tgcagggagg aaagcggttg tgaagtaaga cacccgcggg gtggctcctt ttgaatagcc
       61 ctgctcgtgc ggtcggaagg gtcgctgtgg ttcatagtgc cgctgcgtgc tttgtgcatg
      121 tgcccgcgtc catgtctgtg ttctgaatga ctcgctgaag aacgcgtttg tttgcaggat
      181 cacagctcag cgccgttgcc gcgtcccgga taaaaacacc ctcctgcgtg ttgctgtgtg
      241 ataggctgcc gccgctgctg ccgccgcgca ggaaccagct acacgggggt gtcccgcgat
      301 aaaggccgct ttgtggtgga agccaccggc ctggagctgt gaaagaaaag gcgtcttgtt
      361 tggaatcacg tttaattaac cagcactctc aatctctagt aatataactg ctttaaattt
      421 tcagacagtg ggagtagctc accgttgccc aagtatgcct catctcccaa accaaacaac
      481 agctacatgt tcaaacgaga gcccccagag ggatgtgagc gagtgaaggt ctttgaggag
      541 ctgtcgtaag taacgccttt tatatcagct ggtatctgca aagcagtaac cctgtttact
      601 gagcctctcc gactgcagat gaataaactc ttccagctga tgagtgttgc aggagcagtc
      661 tgctcttctt gtacgcaaga gaaggtgaag tgttcacgtt gggttgaaga ggaaacggag
      721 tcttttgtgc ttgaactctt tttgtgcatt tctaaaggca gcaaaatccc aagcagaaaa
      781 ggtacctttc gttgcccagc ctttagaacc ctctgcagtg gcagtttgtc gttaacatct
      841 tcaatctctg cggcctagga acggagctct ccttgccgca gttctccctc agttccgagc
      901 gcgggttgtg ttctgatgcc ttaaaccacc taaacaggaa cagaacgcgg ggcagcgttg
      961 ggcagcagcg cgggctgtgc tcggtggttc tgc
//
LOCUS       KCLA01001784             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29011upu ultra-conserved element locus uce-2187,
            sequence.
ACCESSION   KCLA01001784
VERSION     KCLA01001784.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29011upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-2187"
BASE COUNT          232 a          191 c          204 g          261 t
ORIGIN      
        1 tttttctgct tttagaacaa aaataataac tgagcctttg gcattctgta ttcattccca
       61 gtcggctcca ctttactttc tcatctctca gcatttgcaa ccacaaaaaa agtacgtgct
      121 tacaattagt tctagaaaac ctttcctttg tctctagcat gttgcgtgtt tgcaggggat
      181 agtgtgcata tactatgtac atttctatct gtggtaggag gacacagatc taccttgtgg
      241 agtgcaatag atataagagg ggagccgtgt ctagtgcaga ttaagggagt tctcgttacc
      301 aaaacgataa cttccatctg acacaataaa ggtgtcactc tttctcacct tgcagagaga
      361 gttgcctgtt tctgatcatg acacaaaata ctcactggag tctgggtgtc cccgcagtgc
      421 tgagctcctt gctgtgtgtg ctgtagatgt cactggtgtc tgattgtgct tgaattaaca
      481 cactgttttg acttctggaa aatgcctaaa ggacaatgca aaaagctttt gtgaatttgt
      541 ttttaaagaa agaaatccgg tttcttcgtg tttccattta gaaggcagag agtgtgtgaa
      601 ctgtggagca actgctaccc ctctctggag aagagacggc actgggcatt acctgtgtaa
      661 cgcctgcggg ctctaccaca aaatgaacgg tcaaaaccga cctctcatta aacctaaacg
      721 aaggctggta agtgtctctt ttctttctgg atttggggat aaattaggca aggggaccac
      781 acgcaggcac aagtgaaaca tatctccgct cagcccttgc acgagccaag ctgtactgta
      841 catgggggtc agtcacgtta aggtcactgt tgtgcttcag ggcagatc
//
LOCUS       KCLA01001785             316 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29025upu ultra-conserved element locus uce-4762,
            sequence.
ACCESSION   KCLA01001785
VERSION     KCLA01001785.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 316)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 316)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..316
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29025upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>316
                     /note="ultra-conserved element locus uce-4762"
BASE COUNT          109 a           46 c           57 g          104 t
ORIGIN      
        1 atgttacgac ttcatttttc atttgggttt tcaagtcggc cttggaaatc tgagattgca
       61 ctaaaggaaa agagacaata tgatatcaaa agagaaaaga aattacgagc gtgacttatc
      121 tttaatgttt tacatcaaaa tgaaatttct ctgatatgtg tcatgtgcat aaacaacaca
      181 ggcagctttt gtctttgttg aatttaaatg aaaagtccct ctagatatta atatgtggac
      241 ttcatttgtt agcctgctaa gtcagggact tataacaaaa gctttgtaaa caaaagatta
      301 aactgaatcg agcttt
//
LOCUS       KCLA01001786            1008 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29041upu ultra-conserved element locus uce-432,
            sequence.
ACCESSION   KCLA01001786
VERSION     KCLA01001786.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29041upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1008
                     /note="ultra-conserved element locus uce-432"
BASE COUNT          282 a          215 c          228 g          283 t
ORIGIN      
        1 caagccaaag ctcctgagct agagggatgg cagagttcag acctctgctg atcagccaca
       61 gcacagctct gattttcagc agtttttaat tttgataatt gtttaagtgc agtagggatc
      121 aagccacgcg ttttccatct ggtacaaaaa acagtaggaa tcaagcggag gagacagccc
      181 tttaacgtct tgtgtgggag gtaaatcagg gtcagattaa atcacgatgc ttttttcctg
      241 gaaagtggat ctccttaccc atggcgttac gctggagaca cagagccacg atatcatgaa
      301 gcaaattaga aatacctttt cattaaacgt gattgcagaa agtcctggga aggaatgtgt
      361 taatgactgg tgattgaatg cagtggtttg caagctctaa gcagctttag tgtctcctac
      421 cacagccctg atttaaaatt cataaatgct aatcctccat aatttacggt ttaaaaagca
      481 gccccactca caggccctgt ggctacagct ctgtcagagt aattatgccg ccaagctgaa
      541 attggactac taactgagat attaaacagg gtaggaaatc ctcttccctg gcagcctacc
      601 caattattcc aaataagcaa acagattagt gagtaatttt ccagttaaat ctggtgattg
      661 gtgccagaat tgtatgttaa atattcagaa gtaaatagat taaagatgaa atgtcccctt
      721 ttctcaagct taatttagtg tgtatattaa aactttttag ggggaaaaaa atcttcattg
      781 aagtgcaatg cactcgcttt gaaaacagaa ccttccctgg cttgtttgca cttggggcag
      841 tgccattcat tagccggggc gtgttgtgcc gagggaacct tgtgccgcat tagacacagt
      901 atcagtcctg ctgttccttt atccctcacc ttagaggagc cctcctgggt ggcggcactg
      961 acagtctgca tgaagctcag cttgggacct ttggggacgt cttctcac
//
LOCUS       KCLA01001787             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29056upu ultra-conserved element locus uce-6806,
            sequence.
ACCESSION   KCLA01001787
VERSION     KCLA01001787.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29056upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-6806"
BASE COUNT          247 a          153 c          169 g          241 t
ORIGIN      
        1 tctaggtcag agagcttcag ttttaacacc cttcatctgg aatctttcac ttgttctaaa
       61 tgcacttgaa aacatgaaaa aagctttatt agtagtacgc tccctcagag ctggggagtg
      121 tattttgtaa gaatcagttc tagtgcctgc agacagcagt acacgcaagt tttacattgg
      181 ctttgcagaa aacgtccaat atcaatgcac agaaatatgt tgtttatttt tagcaacctc
      241 tctagaaagt tttgcatatt ctgttgtatc acaaaggatt tcttctgttt acagttgctt
      301 agaactaaga agatagatat ttacccaagt tttcttggct tcctcttgct cccttgatat
      361 tctagagttc cctgtggaga gggccaagaa cacacagtca aagcaaagca gcaagtcgtt
      421 aatttttaat tcaaagtgat tttgtgttga atgcaagcag atgctgataa tatcagaagt
      481 cacagcataa tttttttgat caaagggctc aagtgagcct gatgaagcat gcatcttgct
      541 cgtctttgat aaaccacatc aattattcac cgtgaaggca gacatcctga catgaaagca
      601 acagataaag agcataagca catgttcaag acgagagcag aagaacgtgg gggtggggct
      661 ggaggggctg aaacaggtat taataacaga attattaact ggaaacaaag ccagtaaaac
      721 agctttattg ccactttgaa ctcacgttta actggttata gtacatgttg tcctcagggc
      781 tattcagcat tttgggctgc tgacatcgtc
//
LOCUS       KCLA01001788             402 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29071upu ultra-conserved element locus uce-5087,
            sequence.
ACCESSION   KCLA01001788
VERSION     KCLA01001788.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 402)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..402
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29071upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>402
                     /note="ultra-conserved element locus uce-5087"
BASE COUNT           95 a           89 c          108 g          110 t
ORIGIN      
        1 gccccctgcg ccgaaatagc aagggtggtc ccagcagctt ttcatcagtt gctcatcagc
       61 atgctaattg ccgtatgact aattatgccc tgaattccag ttgattttct taatgagaca
      121 gctgggttaa ttatgtaatc gtatgattac attagcccag agtgccccgg cgaaggggaa
      181 cgcgggcgag gcctgatgcg gtacgagggg ggatatttat tctgctaatg acagaggagg
      241 gcagcagtac ccaccgtact cgctgagtaa acacttagat tgaattatta ggatcggtgt
      301 cccggagaga cggatgtaca gcttttaaac agaactcggt ttggtaattt ggctgcttgt
      361 ccgtagtcct gcgtctcctg cgttgatttg gcaatatcca tc
//
LOCUS       KCLA01001789             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29087upu ultra-conserved element locus uce-3540,
            sequence.
ACCESSION   KCLA01001789
VERSION     KCLA01001789.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29087upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-3540"
BASE COUNT          217 a          175 c          177 g          220 t
ORIGIN      
        1 ccacagaacc acacatcaca gttgaatcat gggttaaaca tgcagagcag agcatcacag
       61 gtcccagcat gactttgtgc ctggtgctgg tgcgtgatgc tgacagagcc cactcacatg
      121 aataacagct gaaccctcac ctgagcaagc actcaccatg cctttgcggg cttggaggga
      181 tttggaagtt cttttccctt tgagagctga ttaaaattga aaaattaggc agcccattgg
      241 gtggtttttt ctcagaggct ttcctgtgag gagactgggc catgctcagt gccacgcagc
      301 gctcaggagt ggcacttagg ctgtatatat tatatgctgc tgtaagaaca tttgaatggt
      361 aatactcaag caattacttt cctttcaaga tcattaaaca caaatctgac ttgtgtttta
      421 ataggactgc caatgtattt aatggggggc agtaaagggt agtttttttc taatggatgg
      481 atgtttatat tattatccac tctgagagac cacattagaa ggaggctcta caacactcat
      541 gtgttttgcc tcaatccttt tcacacagtg cttggtattc tcctccattc agcgtcttac
      601 cgtgtgatag cgaacctcca aattacctat taaaataacc acattttaaa gaaatcacgt
      661 ttccatcaca tctcttaaaa ttgtagagaa agtcaatgct gggcaagttg acaggtttga
      721 gcagtgacac ctgctataca gccatgggac aggcagagtg gggcagagca gcaccagctt
      781 ctgcacgcc
//
LOCUS       KCLA01001790             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29103upu ultra-conserved element locus uce-5688,
            sequence.
ACCESSION   KCLA01001790
VERSION     KCLA01001790.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29103upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-5688"
BASE COUNT          216 a          118 c          143 g          173 t
ORIGIN      
        1 gatgcaggag ggctaagtta ttttacccca gatgagaatc tctttattgt gtctcaccga
       61 aaaagccttt attgaaccaa gcccaagggg aagaaggaag agaagcatga ttaaaagaag
      121 gagaccaaga ggtacgcagg aaagaagtac aaaaaaccct cttcccctat cactgattac
      181 aaattattat acaagctgag ccccatattg tatacttcat ttacagtaat tgtacaacag
      241 ctgtataata ggtgtagttt aaggtatgag tgttgctcag agtgtagctt aaatgtccac
      301 ggtgagatgt gaatatgaat atgaatggtc ctgactgcat agtaatgggt ggtattatgg
      361 gattgaatgg aaaagctaca tatggatgaa tgggtggggc tagcgaaggg tgcagcacaa
      421 gagactaatg gtagatttta ttttctcaca tagatgcctt tttccttaaa taattagcca
      481 gcggcggtag aagcaaatga aaagaaagag aaggagacca gtttggcacg ctcaagatct
      541 atactcatta tattaaatca ttccaatttc cctctcttca ccccacctac ctacctattg
      601 atccagtcgc attaaactta gcacatgaac aatggaaaag ttccagcctg
//
LOCUS       KCLA01001791             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29117upu ultra-conserved element locus uce-638,
            sequence.
ACCESSION   KCLA01001791
VERSION     KCLA01001791.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29117upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-638"
BASE COUNT          332 a          160 c          137 g          282 t
ORIGIN      
        1 aagaaaaatc attatatcaa ttcataatac atcatgcaag tattttaatg aacttctttg
       61 tagaccacag ctcaaatcct gacatttatt atttcaatga aaatgctctt tccagggttt
      121 ctgtgaaaaa aggaagccat tttcaaacct tgaaacaaat tggctcccat atgtaagttt
      181 aaattatcca tcaccctgca ggaggattca agcaaaattg aaggccatct tgatgaataa
      241 tcaaggtaaa tttgtcacat ttttaccatg ctgcatactt tcagagtttc ataaaaagat
      301 ccacataatt agtttagctt accaggaaaa aaaaagttga atgacaaggt cagactcttg
      361 ccctttcagt aaattagaga agattgccat aaattgcata atataatgaa acaccaattt
      421 gcatattttc tgctatatta aaagggatca gttttagctc gcaaagcaga acaaataaaa
      481 acatgcattt taataactca aattactccc aggaagtgac cctcagcaga aagcctgatt
      541 atcactactt aattagaagc cttggaaatc taaatcctcc tttaaatcct attctgtgta
      601 cagtgaaaga tgaagccatg agttttgtct tagattcaat atttactctt tactaatatg
      661 tttgcagggg agactttcca agcgttatga agacatgcaa aaaaaattaa tattcaaaga
      721 aagagtgcat aaaacctgtg ttggcttgca ggtgcaaagc aattaacaag ctggcatttg
      781 cagtacttta aattaattaa ttaaaaattc aaagctgact ttcatttctt taaatgtttg
      841 aacattttat ccatcaataa tgaaccacta cttactgctg tgctacaaca gctggtaaat
      901 gaaaacctta g
//
LOCUS       KCLA01001792             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29131upu ultra-conserved element locus uce-2694,
            sequence.
ACCESSION   KCLA01001792
VERSION     KCLA01001792.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29131upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2694"
BASE COUNT          166 a           78 c           66 g          147 t
ORIGIN      
        1 aatgagacaa ccttaaagta gattatgtct gcaattttct ctaattcaag tctaaattag
       61 agaagacatt ttatgaatgt atgctatgct caaagctaat tgaaagcaat tatcaaagtg
      121 gcattttgtc tgtgacttta agatacattg taagataata aatgattctc attatgtaat
      181 aaaaaggtca catcttgcct ttgggctagt gatgctaaga gtttttcaaa agcaatcgga
      241 gacattttct ttagtgaact acaactaata caagaaccat cacttattaa atatcagttg
      301 tcacctgcat agtaccccca tcagagatgg gtatttcttt caaaaagaaa caccacctca
      361 ttaaaaactg caaaaatata tctcttgaag tgcatacctg acattttcaa gttaaaatga
      421 atatccttca cttgtcattc actaatagta atgaaac
//
LOCUS       KCLA01001793             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29146upu ultra-conserved element locus uce-4086,
            sequence.
ACCESSION   KCLA01001793
VERSION     KCLA01001793.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29146upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-4086"
BASE COUNT          278 a          172 c          168 g          257 t
ORIGIN      
        1 gtaaaataag gagatgaagt aggcataatt gctgaatttt cttaacttta agaacatctt
       61 agaaaaagaa ttttttgttt cagccttaca cagaacgcat gttgttctct ccaactgaaa
      121 ctcaacactt ccaattactt taccagcaat ttacctccaa tagctggatt ttaagttaat
      181 cccctttgag ttctctgaac atctacaatg gcaatcactt tgcctattag ctgaacagcc
      241 ttttgggaga tttttctgct tttctcacaa acactttttt ctttgttata aaatattatt
      301 aacttaaaaa gccaaatgcc gcaaagatag ttagggatac acagtctgtt ctgaagcagc
      361 aacaaggggc ctagcaatga gggcagacta attttattaa cttcagggaa acttcaaaaa
      421 gctttagggc tttaatgcca gacagagacg accccaaaag tcagtttaag tgctgcataa
      481 acaaaggatt agggcaagaa aaagctgaag gctccttgca cttcttgttt atattgtcat
      541 atgacctact aggagtggga gagggctgcc tctctgactt taatccccca cggtgtacag
      601 tggcgtttca gttcactgac ctacattacg ataatatttt tttaaattta tgggcagagg
      661 tgcagcatca aactcactta aggacttaaa tgaaagaagc agggagggag aaatacccag
      721 aagagaaaaa ttttctggct agtatagtct ccctctcaca ctcaggttag atcagcagct
      781 tagaaaggga tttcaagttc aaagggaacg tctctgttac tcctgtttta tggcttagac
      841 cagaggacac aacagcactg actttatgaa atatc
//
LOCUS       KCLA01001794             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29162upu ultra-conserved element locus uce-5878,
            sequence.
ACCESSION   KCLA01001794
VERSION     KCLA01001794.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29162upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-5878"
BASE COUNT          190 a          286 c          215 g          142 t
ORIGIN      
        1 ccctgtatca cccagcagcc tcagggctgc atcagggaca cattcaccct cccagcacac
       61 ggtttgtctc cacagacact gagtacatca gtactgagga gctggcaaag gtggagaaga
      121 tgctgaccca cttgagcgag gagtccaagc aggcagctgc caccacacta gtgagcccca
      181 gccaagtccc tatgctcagc acctggcatt gacacagggg tgggttgcca gcactgttca
      241 ttgtccttgt cctccacaca gcccaccagc gaggaagacc tgtgccctat ctgctacgca
      301 caccccatct cagccatctt cagaccctgt tcccacaaat cgtgcaagtg agtagctcct
      361 gggtgcaccc ccagcagggg ctcagcccct ggcccaggac gctcacactt ttcttctgta
      421 tcccagagcc tgcatcaacc agcacctgat gaacaacaaa gactgcttct tctgcaaggc
      481 caccatcaag ggagtggatg acttcaccaa gccagccagc tcgtagtgcc cagcgccgca
      541 tcacaggctc ccccagccca acagggtagc cccctgacag ccaattggct tctccccaaa
      601 cacttgccct gcctgaggca gtgtggggcg gggctgcagg gaggggaggc ccaacaccag
      661 gccagcatcc cctcaccacg catcgctgtg ccctgcaggc agttctcaga gaggggagcc
      721 caaagcagca ctggcaacac acagcagccc cagcggcagg gcagggggcc aggctgggcg
      781 tttgggctgt taacttgccc ctagctgggc ctgacacaat taaacgcaac att
//
LOCUS       KCLA01001795             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29178upu ultra-conserved element locus uce-7703,
            sequence.
ACCESSION   KCLA01001795
VERSION     KCLA01001795.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29178upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-7703"
BASE COUNT          339 a          187 c          193 g          250 t
ORIGIN      
        1 tactgcaaaa agtatctgaa ataatattga tcttttgtct gtcatggcca gaactgcaga
       61 catccaagtc agggctagaa gtggcaacac aacacaggaa ctccaaaggg atgccctgtt
      121 ggaagaaaga gaaaagcagc attgtaatat tgtacaagcc ccattaaaga tcactattaa
      181 aataaaacac acttaaggat gacactttat caagttaact tgagcatcac agataagaag
      241 atagcagtgt catgatttat attctaaaga atatcctgta ttcagttaat aaacagggtt
      301 gcaagttttg ttaaagagta tttaaaggtg ctcagggcac tatacggtgt tagcaaacac
      361 agttgtcatc atcaaactac tgtctcacat gcactgtcta agtcgtaaca agaagatgta
      421 aatgatcagg actaacatgg cattactggc ggtggtggct gacaaagctg ttgtagaaac
      481 tactccacac ttggcacatt tgagcgtcaa accgctatga ggctcagtca tctgactgca
      541 aacaaacaga acacccacaa aaagaacaaa atattgaatt gtcaccaaaa aacattgcta
      601 ctgaaaatta gcttttaaat atgacgtcat gcaggggaaa ggactcgaaa aacttggtac
      661 tttacattat tattagcttt agttatcaag gctctggggc tttgtttcat gcagactcta
      721 tttctttcat ttacactagg aaagcccaca gacgaccagt gatccaaact gttcagtaca
      781 ctgaggcaaa cgtgctaagg tagacacaca gagtgaaatc cctctattca gaccagttca
      841 aagactgttg cagccaactt catttgacaa agaggacact taaaggaggg gtatttgtag
      901 ggcatttata gggaaagaaa cctgcaaaat tgttcaagaa ccaaatccat gtgtcagctc
      961 tatagtcag
//
LOCUS       KCLA01001796             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29194upu ultra-conserved element locus uce-3648,
            sequence.
ACCESSION   KCLA01001796
VERSION     KCLA01001796.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29194upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-3648"
BASE COUNT          272 a          209 c          206 g          298 t
ORIGIN      
        1 gctttaactg ctgttgggga ggtgcgttac ggcctcgagt tgtgcatttg cagagaaaat
       61 atcacaccgt ccagatgctc aagtctgctc tttcagtgca gaaaacccca cacaaggctg
      121 taacagcaca tgaaatacca ggaaaaatct cggtgttttc tttcacctta agaatcgcac
      181 tcatttcaac cgggatcaga ctatccatta gctatcaaag tcctaagtct aattaacccc
      241 caaaatggac tgacaaagat cattcctctt ttatggagcc taaccggttc tatgtacgct
      301 gggcatgcgg tacctaagtc agatgctgct ttgttataat tagggcagca aattttgttt
      361 tctgtttggt acttgctgtt acatattgca tgtaatgtat ggcactgtta agggaaaaaa
      421 attggagtca aagtgcctgg aaagttaggt ctgctctgta gcactgtgag attgttgaca
      481 tctgccgagg ttggagagct cagtaagcag gaaatggggt gtcactctga gtggtagttt
      541 accattatcc tggcatccta atgaagtgtc tgcagtgcac agagcttctg gatggcatct
      601 taacgcacgg ctaagcaaaa gcacttctct ccttgtcact gtcatccatc tgcctgcacc
      661 ctactgtagc caatgggatg gaaccatgct acaatgtgct ataagccatt tagagttgca
      721 cattgcataa tcagtcccat caaatatgta aaaaatgact attattggtt atttccctca
      781 aactccgaca cctggagttt gatacattaa agtttaactt ttgtaagtgc tgcccattaa
      841 ttccctatat atttttatta aatgggactg agttgcacgc tcgttgtctt gggtcttgct
      901 aatggatcac aaaagttgta tgaatattca ttccaaactc cactttgtat cacagagatg
      961 aacttatcaa ttgcccatat agaga
//
LOCUS       KCLA01001797             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29209upu ultra-conserved element locus uce-7224,
            sequence.
ACCESSION   KCLA01001797
VERSION     KCLA01001797.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29209upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-7224"
BASE COUNT          241 a          142 c          130 g          235 t
ORIGIN      
        1 tcatttattc ccaatataaa tgttcagaga gtagcagaac aagtggaatt gttaagtgct
       61 tcccaaggtt ctgttgtctg ctactgcaat gttagaccaa ggcaaaaaaa tagtatcagt
      121 atagttttct actgagtgca ccaacaccac atttgggacg catgctattg atccactggg
      181 ttagggacag aaaatatttg aaattgttct ttagaaaaat aaaatagccc tcactttttt
      241 tgaattactg tggtctttca aagtccatat aaagtattac gcaaggagac aaagctattt
      301 taccaggcag gcagatattc caaattactg gttcttaaca agcatggtaa tacatcagtc
      361 aaaagcaata aatttaaact taatgaaatc tcaatttgcc tacagtgcat ttcactttga
      421 cattttctac attgccacgg tgctttgata aagtttttta aaatgcaaag aaagtgtctg
      481 taaggctaaa gagcagactt ggtgccattg tgcccaatgg aacattacag tacttaagtt
      541 ccatcactat atgccctgtg gcagactaag cctgagcgct aacataggtt cagttttcat
      601 tatcatcatg tgattatcca ttttactgca tttaactgat aatacaacta ccagctcacc
      661 ttaaaagaat tagcttggag gtttcattgc tttccaaatg gaattcattt gacaaacaaa
      721 tgacaattag cccagtctcc ctgttctg
//
LOCUS       KCLA01001798             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29225upu ultra-conserved element locus uce-2772,
            sequence.
ACCESSION   KCLA01001798
VERSION     KCLA01001798.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29225upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-2772"
BASE COUNT          246 a          236 c          219 g          254 t
ORIGIN      
        1 aaaagggagc cacataaacg tgttcctttc caataccttt gaagtcaagg gaggaaggag
       61 aggcagggtt tgaactcctt cctttgctag ttgtgcctgg cgtcgtgcag cacatttcaa
      121 agatcccttt gcaatcatct cccaaaccag cgagtgaaag acagaactca tcagaagcct
      181 gtacaaatcc aaatgctcca gctattacag cttgctaaaa ataaagcaga gtaggtttcg
      241 gtagcaataa taagctgcat cttatccata tttcagatgg aaaagaaaaa tatggctgcc
      301 ttttagtact cgttgctcag agcaaacagt agtcgcttct gcctccagca caaatacaag
      361 tgagctctcg gcttgctgtt gtgttccatt tcgtttgtcc tttaagttta tctagctgct
      421 tctgcaccca ctttcacaat gcataggctg tcgttccatg acctagcatt attaaattgc
      481 acttatcaat cattcttgcc aggaatgcca tcgccaacta cattaaagaa gtcagagaag
      541 tctggtttca gcagtccctc gccttcgcag acctcctccc ttggaacggc tttcacacag
      601 caccatcgac ctgtcattac aggacccaga ggtgaggctt aacccaagag cccccaggca
      661 gcttaaacgt tagccacggc accctgtgtc catcccatgg aaagacttcg ccacgtgtga
      721 cccgcccagt gaggggcagt gattcagaag cttcagaact tttagttgtc gagacctgcg
      781 tttggttttg ctaggctggg ctggttggtg aaaatcctgc tgagcgttca agagcatcta
      841 aggtggaact ctcactttct gggggcttgt atttgaagag ggtggggaaa ggaacagagt
      901 gtgttacaga gagtgtcttc tgcttgtatc catccgtagg gacccatcac tctct
//
LOCUS       KCLA01001799            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29239upu ultra-conserved element locus uce-662,
            sequence.
ACCESSION   KCLA01001799
VERSION     KCLA01001799.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29239upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-662"
BASE COUNT          324 a          179 c          209 g          347 t
ORIGIN      
        1 gtgtattctt tcattaaaaa tggacagtgt ggaatgtttt cctgcatggt atttgctcag
       61 ttattgccat ctgaattaca ctcacatgca tgattataat ttactataat gtttacaacc
      121 agggttttca tgtggtttta atttacattg caattaaatg aggagagctt cagacatcag
      181 gggttaagag gtaccttatc tacaaatcat aaaaattagt tagcatttgg aaacatcaaa
      241 tttattttaa agcctgttta tttaaataaa gatgggggga aaagatagaa ggtgggaatg
      301 ttgatactcg ctcatctttc attgtacagc tctactgttt cgcagaaagt ttttacccca
      361 agtaaatttc tcatttgttt ttttagtgtt tgtgttcaat aattcatcga ttcccagcag
      421 cagggaagag tgagagattt atggtgtatg attgtgtcat gtcttgtttt atcatgtcga
      481 tagatagaaa attgaccaca actacaaaag cctatttata attctatttg atcaccatgg
      541 gaactcatca aaacagaggg cagcaccgaa gtttcattaa cagatcatct cggatctcct
      601 gctgtgtcct gtcttcattt tcttttcaca tcatcctttt gcttagagcc ccagcatcag
      661 agaggaggtc agagcaacag taatggcaca tttaccattc cccaccatcc cccagattaa
      721 tattaaactg ttaaaagaaa atgagagttt attgattgtt ttaagccagg catgttctag
      781 cagcaagccg ttattcagat tcagtgagtg gcaatagata actgatttca ataagaagac
      841 agagaagaat gcggtccagg gatcagaaca gagggagaac aatggcagag gaatgtttaa
      901 tctttcttat ggcactaatc gttacttttg caatttgtga ttgtttatag atcatttctt
      961 ttaagtctag gtacaagatt gaaaaatctc aatctagcca cttagatttc tgcaggggca
     1021 atgcacagag taggatccta tttaatactg ccgggtaga
//
LOCUS       KCLA01001800             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29255upu ultra-conserved element locus uce-4662,
            sequence.
ACCESSION   KCLA01001800
VERSION     KCLA01001800.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29255upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-4662"
BASE COUNT          134 a          122 c           68 g          120 t
ORIGIN      
        1 tattcttgct tgttctgctc ccacgaacaa tattttgggg gatttcaggc tgacgttatt
       61 tatatgattt cacattttcc tcactcttcc ttctgccaca agtattcctc taagagacag
      121 aaagcgaaag gctcggttaa gaaaaacaca gccacctcca aagtgctaaa actgcaataa
      181 acccatcatc tctaacaaca gcggagcatg aaaagataaa aaacagcctg ccaagaatgt
      241 agtaaccacc cattcacttt taaatgctct ccacacttca atgcacagac ctaattactt
      301 ttctgcattc ccaaatccac tttgcagcgc tgcaatcaga aacctggcgt taaaatattt
      361 tagactctaa ggatcaagac taattatggg cctaagctgc accttttggt ttcctcacga
      421 accagcctgg ccccccattc cccc
//
LOCUS       KCLA01001801             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29271upu ultra-conserved element locus uce-411,
            sequence.
ACCESSION   KCLA01001801
VERSION     KCLA01001801.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29271upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-411"
BASE COUNT          217 a          130 c          128 g          228 t
ORIGIN      
        1 aatgatgcac tctcagatct gttgcacatc ttcaatatta aacacaacag acgatataat
       61 tgcagacaca atatcagtaa cctccaaggt gtaaaactac actccatttt cttcacgttt
      121 tactgctaga aagggcaacg attgtgctgc aaaaatgtat tttaagtctt tctgctggat
      181 ttttaacagc aagagtgcag agtgctccac acaatccaga gatctgcttt ttaggaatca
      241 acatggtgca caccgtgtga actgtcacat taataaccct atgctgatat tcaaattttc
      301 tgtctcaagc taaagaaaga ttgaataccc tgctgttgtg tggccaagat tgaagaggtg
      361 tctcactgac attgttcaaa gtttatgaaa atatatgaat gctcaaatgt cattggcttt
      421 gcgcttccaa cagactgtgg ttttatgaga aatcagtctt ttaatcaaaa tgattgaata
      481 ccttaaggtc gaatccaaag atatcagtta atatctacaa acgtgctatt tctgcaaatt
      541 ttgccaagcc gtacatattg tggcgcattt taaagtgtta atttgtgcat tccatattga
      601 aaattgatct tgagttttag ctttttgtca agcaaaaaca tatggttgca agctctatgc
      661 attttatgtg acggctgttg aagctgtcac atgtgcaaac ttg
//
LOCUS       KCLA01001802             620 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29287upu ultra-conserved element locus uce-5022,
            sequence.
ACCESSION   KCLA01001802
VERSION     KCLA01001802.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 620)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..620
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29287upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>620
                     /note="ultra-conserved element locus uce-5022"
BASE COUNT          200 a          128 c          101 g          191 t
ORIGIN      
        1 aaaaacctcc ttacaaaaca aaaccagtat tttcagaatt ccactctact gctttcagac
       61 tatttccatc aaccctctta ttcattttga tttatttcca tccataagca gactaacgct
      121 tttctatgct tttattgttc ttcaagaata ggccttctat tggagaaaaa taatgtctct
      181 acgaccacca ctttgctcaa tgcagatctt cattaatctg cagccacagt acaggctttt
      241 agcagcaagc acttttgatg ggaattgaat ttgatactgc attatggttg tagggcttct
      301 cacaatagac tgtgttcttt tctgtgtctg tgcacaatca gagagaccca attaaataat
      361 ttggtgcaat aatggagaac aaaagagtat gagggcttaa agtgagggct tcagcatttg
      421 tattctccct tttctgtatc atgttaatta atttgcctga aaaccaaaag aaagaacata
      481 atgtgaaaag catagctcat ctacaacatg gaggcacttt aaatgcagat accataccga
      541 atcaacgccc aacaaaggga cattctttgc atttccataa gaaaaacata aaatgaagtt
      601 gccagctacc ctagagttgt
//
LOCUS       KCLA01001803             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29303upu ultra-conserved element locus uce-365,
            sequence.
ACCESSION   KCLA01001803
VERSION     KCLA01001803.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29303upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-365"
BASE COUNT          205 a          122 c          124 g          195 t
ORIGIN      
        1 tggcattttt gctctcactt tttgaatggt cagcaatgca aaatcatatt tccccttttc
       61 tgctcagcac tgactataca gatttcacaa gctgcaatca tgacaacagt ttgattgaaa
      121 gcacagcaca cagtcaccaa gcccaggatt gaaaagcact agactaaagc ctgcctctga
      181 catttgataa tattattatt atagagtgct ttgcagacct cataagaccc ctctcagatt
      241 tctgcatagt taatttgtca gtttataaat taccacatta tgttaatgct gaacacttca
      301 aaacacaaat atatgtacag agggcttgaa tatttgaagt gttttagtac tatagggaaa
      361 taattttgat gtcaagctgt gtcagatata gaagtgctag gggatacatg accattttat
      421 caggatggtg tcaatgatgg cctatgaacg ttcaaggggg gaaataatct tttatctcta
      481 ttgtgcatca tgcaggtcca gatggaggat aaaacatgca tgagttgcct gcagctctga
      541 aaataattat agtcatttgc cagaaatgtg gaaagtgcat ccaaccaagt taccacccat
      601 catagtgaca ctctgtttgc atactgatga agtttaaagc cagaga
//
LOCUS       KCLA01001804             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29319upu ultra-conserved element locus uce-1539,
            sequence.
ACCESSION   KCLA01001804
VERSION     KCLA01001804.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29319upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-1539"
BASE COUNT          232 a          155 c          167 g          270 t
ORIGIN      
        1 ttaaatggct tgggatttgg tgcaaacaaa catgattgat agctggacag acatgctcgt
       61 catgaaaaag aaccatttct gaagcccagt tggggccaaa catttaccac cttgcttcat
      121 agtaaccagt tgagatgaag cacgtcgtta gaacgttgtt ggacaccgtg ttgaaattac
      181 cccccccatc ggttgtgaag aactgtgcta cattcaggct aaccattgaa ctcagtatat
      241 atatttttcc ctcctgcctt tttgtctggc aggctactgt tcttgttgct cttctgtgta
      301 atgaaactta aatgcttgtt tggaatactt tatttaacag tttagaaggc ttgatagaaa
      361 gagtgcttta gtctgaagag tatacattgg ataggaaagt atttccttct cttgtttctc
      421 aagtctctct ccgccttact tagcttgaga tctttgcagc ttggttcatg gattctagcc
      481 ttgcccgttg cgcagtatat atcaattgag atgataaacc aatgaactat gtcaaaagca
      541 ctctcagtat cacatttgac aaaaagtttt gtacttttca catagctcgt tgccctgcaa
      601 aggggttaac agcacaattt tttaaaaata aattatttat aggattaaaa tgacttcatt
      661 tgtatacatt tggaattaaa acaatgcaag aagtgttgtg aaacacggta tcactgatgc
      721 ttttctggag tgtcttgaga cccagtcaaa agcagtgtct ggagggattt tcacatagtc
      781 agtggagctt gtgttaggag aaactcactg tccatcttta ctga
//
LOCUS       KCLA01001805            1050 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29333upu ultra-conserved element locus uce-2970,
            sequence.
ACCESSION   KCLA01001805
VERSION     KCLA01001805.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29333upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1050
                     /note="ultra-conserved element locus uce-2970"
BASE COUNT          298 a          185 c          217 g          350 t
ORIGIN      
        1 gactcctgtg taggtgtatt tagtagaaag gaccatgtga tgtcactgtt gcttcaggag
       61 aagctgctga atgagattta tcagctaatc atgtaactat tggaggaaat tatactctgt
      121 ctttcctttg cccctcatga atagtgtttt actcatatta atcagggcca tcatgggatg
      181 atccctgacc ttactatgtt aattgctgta caaacatttg attttcttct ttaaagctgg
      241 aagtttctta agaattgtgt ttcaaagaaa tttcattaac ttttctagac tttgcagtaa
      301 gaagggctgc tgactatctt aaaaaatgct gcctacgtgt ttgtatttac taatcagttc
      361 accaaactaa attgccttta gttctgtgag aaagggttaa agaacactct ggcttgaaaa
      421 gtataatgtt gataaatcac tttttgattg gagactgaaa aattcaaggc ataataattt
      481 ttcctatatt atgtaggttt ttggagcaag ggatctgcag gtacggtgca cagtgtactt
      541 cagcgcattc ccaggaagag ctaacagaat ggcaaaaacg atatgcttcc cgcttgatca
      601 gattaaaaca gcagaaggaa aacaaacagt gttcgggcag ttatatggaa accttgattg
      661 agaaatggat gaattcgcta tctcctgaga aagtggtaag gaaaatatac tactttccta
      721 tgtgcttgta tttaacacta acagatgagc ctggttttgg cccttaccat cagagctggt
      781 cagcttactt cttaccaagg aattgtccaa ccaatttgct cccctttcta ttctgccctc
      841 tgtcttcttg caaagatacc agagatttta gctcattcct ttttcaggag tgcagtagag
      901 attgtgactt aatgcttgtt ggttcatcac agcttgttca ttttgcatat atagtgtact
      961 cagtgtagga tgggttagcc aagtctcatg gtattgttcc tgttccttga ctaggtggca
     1021 gatgttttta gagtgcagaa caataaatga
//
LOCUS       KCLA01001806             282 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29349upu ultra-conserved element locus uce-886,
            sequence.
ACCESSION   KCLA01001806
VERSION     KCLA01001806.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 282)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..282
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29349upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>282
                     /note="ultra-conserved element locus uce-886"
BASE COUNT           87 a           50 c           49 g           96 t
ORIGIN      
        1 taaaataaaa aatgtaactt acaagcgtct ccttttttaa agcagaacta cataatgtat
       61 taattggttg ctattagcat gcagttttat tgagcatagc acacagaagt ctgattgtga
      121 ccgaggagtg ttttcaatga aagtggagtt attttagctg cagacatgtt tacatttctg
      181 tggtttagtc tataactttc tctttttctt gcttcagaat tctgctccat gaagcaaagc
      241 ccttagctcc cagacattcc aaaaagtctg ccaaaataat ag
//
LOCUS       KCLA01001807             998 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29363upu ultra-conserved element locus uce-2361,
            sequence.
ACCESSION   KCLA01001807
VERSION     KCLA01001807.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 998)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29363upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>998
                     /note="ultra-conserved element locus uce-2361"
BASE COUNT          270 a          249 c          283 g          196 t
ORIGIN      
        1 cgtgtgaggc agctcctcac agggtaccag gtgggtccac caagaacaca accgagggaa
       61 cctggagggg aacgatgcag ggaagcagga gcatcctcag gtagtggatg gatgctggtg
      121 ggaacagagg ccgagcacag cagcccgctg ctgccctgcc ttattaatta ttgccgagtg
      181 gctccgaatc gctttcattt cacgagcggc aagactccgg gagagagaaa ggctggccac
      241 gacaaaggag gccgctgctg cggatctgac acccactgaa gtctatcttg tcagcgcaag
      301 gccaacaaca attagcagcc taatcccctc tgagctggga agccattact caccacgcga
      361 tagcgttaac aatcaatacc atcacaatga gcccggcaat taatgaagct aaagtcttac
      421 ttcagaacct taattctcgc tgtgtggctt taaacgggag ggtttgtgat cgttataatt
      481 aactggtggt attcagccag gagttagtca atgaaactaa tctggattgg agatgacaag
      541 aggcacagtg tgatggtgtc acctttgttt tctgacctcc cgctttccgc tcggcgatag
      601 cagattagca gcccaggctg acaggcaaat gtaattaaca gctgagaccc tgaaggagga
      661 ggggggggaa agaaaggaag gtgggcaggg gagtaaaacc caccctgcag acagccccgg
      721 gcagaacagg aggcaggagc atcacctggt gatttcttgg ggctttgctg cattggggag
      781 caggatatcc ctaaggatac tccagcacag ttgctggtcc acacagccag taaaaaagct
      841 gcagatcctg ggtggatccc atcagcatca gcccttcggc tgcatcagcc acagtggagc
      901 atctcacagt gtgggaaggg gtttaggggc aaagtgattc atatcccagg tctacaaacc
      961 acagagtgag agaaaccccc ttccccacac acagccaa
//
LOCUS       KCLA01001808             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29393upu ultra-conserved element locus uce-2858,
            sequence.
ACCESSION   KCLA01001808
VERSION     KCLA01001808.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29393upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-2858"
BASE COUNT          219 a          202 c          187 g          232 t
ORIGIN      
        1 aagttttaag accttatgtc tttgaccttg ttctttagct gaacacataa aagcagaatg
       61 gcttgctgcc ttaatctcac tccgtgccat tgccctctga tgagagaatc ctcttggtac
      121 ctctgatttg tcattgaagt gaagggaagg gctacgtgca ctgcttgctc ctaccttctg
      181 caatgaggca aagtttctct tgctatcttt agtcttgtcc ctggagcacc tagcacatga
      241 gggcaagagg gactcagccc cacagcttca tttggacctg ttaactctaa ctactgatgt
      301 cgtttacaag gataaaccct taaagccagg ccaaggtaga caaagagcga actctggagt
      361 aattcccttt ggacagcaga gattggtgtt cgagttattg aaaatctgtg taactcattt
      421 tctcttttgt catacttaaa aaatccatga agtttggctg agtgcaaaca ataggctttt
      481 attgttgctg acctccttca taaatgtgga atcttctggg accatcagaa aagcgttggt
      541 acaacaaatt aaaagtctct aaactttccc gggtctcctc ggacgttttg tagacctgca
      601 aatatcaagc agtaatcaat agaatgctgc tctaatactt taaggcaaac tggcagctcc
      661 cgagccagag aacgcgatgc agctgtctcg tggctagaca cgattcctga cggggtcaca
      721 gagtctctca gctgccacca ggaaaaccac gcaactgagc tgcaactgca gggccctttg
      781 gaggcagcta tgtgcggcag acgcgctttc tgcccatcac cagctctttt aggcagcagt
//
LOCUS       KCLA01001809             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29409upu ultra-conserved element locus uce-350,
            sequence.
ACCESSION   KCLA01001809
VERSION     KCLA01001809.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29409upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-350"
BASE COUNT          223 a          136 c          124 g          219 t
ORIGIN      
        1 tcaccaaacc cccagcctgg ttctgttcac atattttact tctatgaaag ttacaactga
       61 aagttcaaaa agtaggtgtt gtgaaacaga taacggggat gcggaggaca tctgtcctgc
      121 tcagtgaaca ggccttggaa cagatgtctc agatttcttc aaatccagaa catgctgtcc
      181 atctttcagt aatttttccc tctttgtcac tgagcaccaa agtattatct ttaatgcata
      241 aaatatgcaa attcttaaag catcattttg ctctttagtg agtttagata ttacaaaatg
      301 gtttaattat aaaaacagac agacctagtc ctgggacctg tgcagctcga aataaatgtg
      361 caatcaaaac tgcaattacc tgcagaattt agtgtaaaca gatcagcaat cacataacaa
      421 acacaggcta gtttgcattc tgatatgaat acagttagat ccaaagcaat tttcctttat
      481 ttatcttagc tgctcagcat aaataaagca agggcattga agcaattagc ataattagag
      541 tatcgtggtc aggccctgtg tgatttctag agacgtttca ctttagaatt ctttttcccg
      601 tacaagagtt tccctgagcc actaaaatat cgctttgggc atttttgtat ttcaaatttg
      661 caagttgtca atttgaaaaa cccttgacac atggatgtga aa
//
LOCUS       KCLA01001810            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29423upu ultra-conserved element locus uce-3981,
            sequence.
ACCESSION   KCLA01001810
VERSION     KCLA01001810.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29423upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-3981"
BASE COUNT          293 a          224 c          199 g          357 t
ORIGIN      
        1 aagggagggg ttatgtgtgt acttactttt gcataattat ggaaaaataa gtcttctttg
       61 tcaacagctc ttgagttgtc tgcataaggc aatgtttttt tcacttcagc aaattgatgg
      121 aaaggtatcc aagccttata tatttgtgca gtaacttcta attctaagca cagtgatgaa
      181 ctgtaagtaa atttcaccat agagctatgt tttccttagc ctctccatct gctcattttt
      241 gacacccctg tcattaactg tcattttcct ttaaatatac agtgaagctg aaaggccagc
      301 tctacatcac atcatttcag attaggggca gtttctttga gctgagcact atttaggtgt
      361 cagaaagaag tctctgacct ctctcgtacc acactgccgc agggccttaa ttagtactga
      421 ctccagccat tactgcaaag aggacaaagg cgaccacatc atttttctac ttaggaagtt
      481 agcgtctgac ctaataactt gtccaggctt gcaggacact gtaatgccac acaatggcag
      541 tggggattat ttgtcagatt ctttcctctt ccaaatgtag gataatcgtg gaagttaact
      601 attgcatcct tcagtcttgc aagagttaat ttagggtttc actctcttga tctgatgtgg
      661 ggacagtgac agagaaggag tcagatgcta agaaaaataa gtgggtgata acaaaacata
      721 gtggtttttt aatcctggtt agaagcatct gactatttaa aatatcgctt ttctaagatc
      781 ttatctgctg ctattaagtt ctgtgtaatt ttatcactca tttaatgaag agcaaagtca
      841 agtccacaat caaatgagtt tgatctcctt ccttccttca tcccaccctt cttcatccca
      901 tcccccaatt tcctaggaga aattcactct tgcatgagaa atgtcttgca atgcttttgg
      961 cacagcattt ttggtttatt gcgctagaaa ttggacttac tgcctcagct gtcagcatta
     1021 cgcagctcca caaaatctcc ttaattttcc tattttgttg gtaacgtttc act
//
LOCUS       KCLA01001811             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29439upu ultra-conserved element locus uce-1092,
            sequence.
ACCESSION   KCLA01001811
VERSION     KCLA01001811.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29439upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-1092"
BASE COUNT          196 a          134 c          107 g          207 t
ORIGIN      
        1 agatattata agatatttaa agctccaacc ataaaataat caaaacaaaa gtgaagctac
       61 tttggggtgc tctggagaat agcaaatgtg gagacctgga tgattttaac tgcccgtgcc
      121 ttcctttcta cctgagtcct ttccactttc tcttcataat tccttgttgg agtacatcct
      181 gcttagcctc caatcaacat ttcaagcact gggatcatgt ttgatattgt cagatggcct
      241 ggaaaattaa aaacccaatt aaaggctcag cacgcgggtc agctcttctg catatcaaaa
      301 ggcctcctct ggctattctg ctcaaattgt atctgttaac agctcacttt gcagagagtg
      361 aaatagcgca gcgtttatga gtaataagta ccttccagct gatacatttc aaacacaaac
      421 cactttcatg gccccggcaa aaagtacaag tcataatcaa attgtcaatt ttttcctgcg
      481 agatgcatag atccattgta actgtgattg ttaaagaagg aaatgcattt tattcacacg
      541 ttggaaaaaa agatgcacat tttccctaca attaaagatt ttttgtcact tttttacatt
      601 gcctttcctt tacatttcta aatagttact ataattgatt ttcg
//
LOCUS       KCLA01001812             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29455upu ultra-conserved element locus uce-6410,
            sequence.
ACCESSION   KCLA01001812
VERSION     KCLA01001812.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29455upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-6410"
BASE COUNT          258 a          179 c          169 g          239 t
ORIGIN      
        1 agagagagac ttgggaactc cagcagtgga caactctgat gttctgccaa caggccttcg
       61 gggcacagag caatatttag gaaaacacac tgtaaattcc atatgaatat attagaaaag
      121 accatgtgga tacaacaagt tttaaagaac attagatgaa acagcttcgg tttgtagtcg
      181 atgagccatg taaaatggat gccttttaac aatttcagta tcgttacaag gctgtgccga
      241 agaatattcc tgttgggttc ccctgccccc ccacctcccc aaacattgct ttcacataaa
      301 aatcttttgt cagtctcttt gttggtgcaa aattggcagt ggttcaaatt caaagtactt
      361 ctattcattt actgaccatt aaaccagtgt cattctggtt cacatcagcc agagagctaa
      421 gctctcataa aaggttagcc tcaccactga cgaataatgt gtacgttttt acagagctta
      481 aaccttaatg ctttgcctga gaccaacaat acagtatatc ttatcattcc tttctcacga
      541 gcaggcagct gctgcaacgc ttgccacttc aaaatatcaa ttgcttgcca gagttgtcct
      601 cagcacaccc tgtcaaactt gtgtacattg tgcaacgaaa atggtgtggg gctgaaagct
      661 ggaaattgtg tcaaattctg ctgtaagggg atgatgtgca aagaacagcg tgtgacaacc
      721 gtagagatga caaacaatag cggcagagcc agacactaca tatatcacaa ctgtgcctgt
      781 atgtatttta ttgcacatat tatatattta aagcatgaca aatgttttgc tgaagctatg
      841 tgcta
//
LOCUS       KCLA01001813             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29470upu ultra-conserved element locus uce-5294,
            sequence.
ACCESSION   KCLA01001813
VERSION     KCLA01001813.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29470upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-5294"
BASE COUNT          165 a           91 c          112 g          139 t
ORIGIN      
        1 gaaggaagga aggcaggaag gaagaaagga aagagtggaa aagagtaatc actgtaaatg
       61 gtatttattt gatcatatta aaggtgtggg acttgctctg caggctcctc agctgcctca
      121 attgtttaaa gaaagcaaaa gagagaaaag ttgaagaggc acagatttcc tcctggtacc
      181 tcggcaactt gcagttgact aactccatgg cttgacagtg gtcatagttg ctttggagca
      241 tcacgtctca gctcttttct tcacacacac cccctccaaa agcaaggaaa tggatgtgca
      301 ttgatgtaat ttagtacctt ggagacgcgg acaaattagt gtagaacatt atcactagtt
      361 aattatgaat gaccgattaa tcaacctaat ctaatattcc acattatgtt gatgttatta
      421 aagtgcatca tgaaaatgac agatcgtctt catttgcgtt ctttggccaa atgtgcactc
      481 tgcagtcatg atgtcaaaga gaaaaaa
//
LOCUS       KCLA01001814             911 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29486upu ultra-conserved element locus uce-7466,
            sequence.
ACCESSION   KCLA01001814
VERSION     KCLA01001814.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 911)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..911
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29486upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>911
                     /note="ultra-conserved element locus uce-7466"
BASE COUNT          177 a          332 c          193 g          209 t
ORIGIN      
        1 cagtagggtg tgcctgagct gtgtcccctg tgctttgggg ttggggaaaa gcaactgggg
       61 atatctgagg tcggtaagtc cagaggtccc acattcctaa gctacccttg tgccgcacca
      121 ccagggccca tcagcctgca gcaccttggc tttcccttcg cccatggcca ggcagcctac
      181 tgccccagca gcacctgctc gtggggattc ctccgcatcc caccttcccc aggagatgtg
      241 ggaaatctcc tcccgctcta tcacacgcct ggatcatggc ccagcacatg tccctgacac
      301 cccaccacat gggtcacccc tcgctcttct aacacagctg catttaacac ccattttctt
      361 ctgcctcttg ttctctctcc gtcacttacg gctgcttctg ctcggcacaa cataggcact
      421 gagagcgggc gcagctcccc ctactatagc cagttagatg tgaggtcctc cactccaacc
      481 tcataccaag cacccaagca tttccacatc ccaggtaggc tcgggagcac cccagtgcct
      541 ggggaagtgc cgtgtctgtg gcatgtccgc atgtgccgtc tcccctgtgt tgcatgccta
      601 gctccgccac ctgcctagag ccagctgaca gcaggatcta cccctggtag aggccatcca
      661 taaacaagac ctgcagcttg aaccctcctc cttccccatc accactcgga cattccagag
      721 ctgcccagag tctgcctgat ccttgaaatg cccctcttct tcctctccct aacctctctc
      781 caccctgcac atgaaaatga gtcccctttg gagaatctgc cccatcccca ccagtgtccc
      841 cagtcaaagc gtgtctgccg gaggcccttc ctcacccatc tactacagat gactatttta
      901 tactccccat a
//
LOCUS       KCLA01001815            1088 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29500upu ultra-conserved element locus uce-2088,
            sequence.
ACCESSION   KCLA01001815
VERSION     KCLA01001815.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29500upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1088
                     /note="ultra-conserved element locus uce-2088"
BASE COUNT          296 a          246 c          271 g          275 t
ORIGIN      
        1 gctcagggca aggggtaagc atactctggt agaaccttcg cagcattaag aatccttgta
       61 actccaagac tttagctcct gcatcacaca cagagtggga ctgttgaatc gtgccttcat
      121 ttcccacctg cagaagggct catcccgtgg ttctcaggac catgcaacgt tttacggaca
      181 gcagagtgtg ggacatgcac cggaaagcaa cgagatgttt gaggtagatc aaaccttctg
      241 gagaggactg ccaacgccaa agcccagcag gcacctcagg tcccagggaa gctgtaggaa
      301 ctcttttaac atccatcccg gtggttgtaa cgccagtcac tacagctcac gagagacaac
      361 taatcaataa ccgtgggacc aagtagtcaa ataaaactac aatccattaa gacggcggag
      421 gtatttactt gttgtattta caccacggag agctgcactg tcagtcagtg cttccccttc
      481 gcaagataga agcaatttgt gcagactgat cccagttttc tcattaatat gtaaatgagg
      541 catgccagtt gttaggttag aagaaagctg tcatgtttat tgtgacagat ttaatggatg
      601 tgtttggatt gtgcattcaa tgtgttttca agagcatgtc ttatctttgt ttaggcagta
      661 aatcaaacat gtaaacaaca attcattagc atctgtcaga agctcagagc tacattgtta
      721 gagtggaaaa tctccccaga ggtgaaaaaa agtatatctg acttattcca gattagctgg
      781 aatcttttcc tgctgtttac cgacttgtaa gtaatgatgg agccacagaa tccgtgcctt
      841 tgggtagcac taggggtcag acagaaacca accaaacgtc tgggatccag agctgctcca
      901 gagatgggat tggggctacc taactctgcc accactgggg accaggccag tgccatgccc
      961 aggtttggag tgggggctgt aggatgtgcc taattctttg gaaggagaaa tctccacctg
     1021 ggctgctgca gctctacccc atgggtcacc actggtagga tctgtttgag acagtccggc
     1081 agagggct
//
LOCUS       KCLA01001816             346 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29516upu ultra-conserved element locus uce-3114,
            sequence.
ACCESSION   KCLA01001816
VERSION     KCLA01001816.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 346)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..346
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29516upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>346
                     /note="ultra-conserved element locus uce-3114"
BASE COUNT           95 a           59 c           72 g          120 t
ORIGIN      
        1 gaggtagtgg cggttgctgc tcagatatgc agccctgcct ggggaaatga gacattcttc
       61 agcaaattgc ttcgtttttt gattgctgat tgtacgcgtg tcaccaagct gactcaaggt
      121 tcatcgatgc atgctcagta aattagaaag aacataacta tggatcaacc aagagaatga
      181 attttgtgcc tacaatgacc cagggccatt taattttctg cttaattttg ttgcagtcag
      241 tttgcatttt cggttattat gcagtaggaa attaacaata aataacaaat ttggtcctcc
      301 tgtgcttgta atgatatttt tataaatctt tgtaatgctg ttttta
//
LOCUS       KCLA01001817             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29532upu ultra-conserved element locus uce-7108,
            sequence.
ACCESSION   KCLA01001817
VERSION     KCLA01001817.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29532upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-7108"
BASE COUNT          192 a          122 c          113 g          234 t
ORIGIN      
        1 gattttgtct ttctgaaata aacgtttgct tatggatttt tttttattgt cacatccatg
       61 gcatttttaa agtaaatagg agtacaaggt ttatattatt ttaaatgtat attgtatttg
      121 tcttcccaac actgtggttt ttagtactgt gaataacgta gtatggagcc agcctattaa
      181 acagcctgtt tttgtaagga aactgttagt ccacctacaa tattctattg cttactgtgt
      241 tcttccaata tgcttagcat tccacaacct aaatgatcat ttgttgaaca aattcatgct
      301 tttattagtc aaaatacaga gaaaacagag cccccctgtt tcaagatatt tgctaatgca
      361 cggttaatta tcacatatag cttactataa ttcattttac agggagacct cctgcaggta
      421 acatactagc agtttatgaa gcaaaataac ctcactatag attagaactg tttcactact
      481 ggtcagacag ttgctgcttc taggccttct cacttcacat tgctaatttg aacaaggctt
      541 tatttttata tttgtcagca gcaagactgt agcatggttg ttaaacctct cccaggccta
      601 attagagtag caatgctagc attcataatg aatctcgtgt cctgagttgg aggaggtagc
      661 c
//
LOCUS       KCLA01001818             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29547upu ultra-conserved element locus uce-3051,
            sequence.
ACCESSION   KCLA01001818
VERSION     KCLA01001818.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29547upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-3051"
BASE COUNT          155 a          100 c           85 g          176 t
ORIGIN      
        1 ttgtcttttt gctgtttgat gatgtttctc attttcagca attgtttatt cttatcggaa
       61 gtccatttga gaccaggcag taaggaactc ttaatgttcc tttctgatgg actctcgttt
      121 gggtcctaaa gatgaatact tcattttatt actttatcta cctatctaca gtatgttcct
      181 gagctagtta aaattaaact tagctatcaa aatgctaaac ttgatagctc atttatcttt
      241 ctgtcttcca actctgcatt acaatacaac agtgattgat cttgcatctt caaggtacta
      301 tagtataaaa actaagagaa gattaattaa aagccgttgc atccagacag gtttttaaat
      361 aagttttaga tttagacaat atatcagctg aagcagaaag attctgagac tgtaagcctg
      421 ctattccaag tgagtttcgc tttccttcag gacacagaaa acccaatcac accgcatact
      481 aacatcaaag tctaatttgg ccaggcaggc ccatgg
//
LOCUS       KCLA01001819             983 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29563upu ultra-conserved element locus uce-883,
            sequence.
ACCESSION   KCLA01001819
VERSION     KCLA01001819.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29563upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>983
                     /note="ultra-conserved element locus uce-883"
BASE COUNT          225 a          251 c          253 g          254 t
ORIGIN      
        1 gtacagcacc ctggtgcggt tccttagtga cagaaagaac ccggtgtgtc gagagatggc
       61 cgtggtacta ctggccaact tggcacaggg ggacagcctg gcagcgagag ccatcgctgt
      121 gcagaagggc agcattggca acttgctggg ctttttggag gacagcctgg cagccacgca
      181 gttccagcag agccaggccg gcttgatgca catgcagaac ccgccctttg agtcaacgag
      241 cgtggacatg atgcgccgag ctgcccgggc gctgctcgcc ctggccaagg tggacgagaa
      301 ccactcggag ttcacgttat acgagtcgcg gctgttggac atctccgtgt cgcctttgat
      361 gaactcgttg gtttcacaag tgatttgtga cgtactgttt ttaattggcc agtcatgaca
      421 gctgtgggat ccgacccccg tgtgcgtgtg cgtgagtgga gaaactgact gttgcccttt
      481 atttatgcaa aaccacctca gaatccactg tctgccctgc gctgtcctgc ttctccctgg
      541 gggaaagata tccccgttcc ctctcccttt cccctgccct tcaaatttgt cctgaatccc
      601 ttattaaagg agacaaagtt ctgtctacat agaagacttt tttttatttt aaccaaagtt
      661 actgtcgttt acagtgagtt tggggaaaaa cgacttgccg cgttatcaca ttgacaggca
      721 ccgctttcct aactgttttt aatgctaaac tctgaaggac aaaagcgact gctgaactct
      781 ttatcgttgt acattcacaa tcttgcagga accaagaagt taccggttgt gaacagccct
      841 tgtccgaggg aggcccgtgc agtagcgtgt agaccttcat gtactgtaca ccttacgctg
      901 taaacttact gtaataacgt ctcacctgga aaacgagcaa aaggcgctgg atcagcagcg
      961 agctgtagtt tttaaaaatg ttt
//
LOCUS       KCLA01001820            1050 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29579upu ultra-conserved element locus uce-2040,
            sequence.
ACCESSION   KCLA01001820
VERSION     KCLA01001820.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29579upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1050
                     /note="ultra-conserved element locus uce-2040"
BASE COUNT          312 a          257 c          212 g          269 t
ORIGIN      
        1 accaccacct ctgaacttca ctgcctgttg tctctggatg cctaaacaca cctgggcgcc
       61 tgtctgtctt ctccagcaga gcatgactgc cctgtaccac ccaggaatgt cacaccttgt
      121 aagctgtacc cacttgttcc tgggagccca gggaaggcag agcagcactt accacgctgc
      181 taaagttctg aattaacagc tgacggcttt gacctggctc ccattagctc ccattaccac
      241 ctggtaacag gctgccttcc acatgctgta cttcacagat atcagccatt atccccagcc
      301 cggatcagtc cccaggcagt atgctaacag cctcttctac aagccaattt acaaggatct
      361 ggtcatgttt acattagcct tctcccaatg catgaaaaga gaagagagcg cttcagaata
      421 gaaatgagca aatatgaata attcaatttt ccttgtggct attaacacat tttccttgaa
      481 taaagtgata ataggttatc atctgtgaaa tggaaattgc ataacagaga gtttctggtt
      541 acaccagagg aaattaattt cacagcacat ctgctgggac ctgacttgtg aatgctaagt
      601 atgagaaaat gcagccgttc agctccgcta cctttataat tagattagca tgcctgcacc
      661 catgctggaa tcctcagtct agtcaaaaga attactgttc cttccttcag atacctaata
      721 tttgtaataa tgaaatgact gaggcaatta gggaaagtta aaaatgaatt atgggaccat
      781 attctattaa ccagatgccg ctgtaaagtg actgactttg tgttatctgt ctagttaaat
      841 acagtactta gccctgctat caatacatgt aatgcatcaa attagcacac acacacaaac
      901 cccactgtaa gtaatggtga ggtggtgaca caagccaaca gtagctgggg aatccccact
      961 gaagagcact ggctctcact gagcttatcc aacagagcac gtagggcaag gaaacccacc
     1021 caggagtcag gagagctggc aaatatagag
//
LOCUS       KCLA01001821            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29594upu ultra-conserved element locus uce-5886,
            sequence.
ACCESSION   KCLA01001821
VERSION     KCLA01001821.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29594upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-5886"
BASE COUNT          292 a          235 c          281 g          202 t
ORIGIN      
        1 ctgcacatgg tgtagagggt gcagaatcca tccctgcctg ccttggatct tctttgcagt
       61 ggagttgaag atggagaagg aagtgttaga tagagaaagc gagacatccc accatgggtg
      121 caggctgaga tctcccaaat taagcaccca cagcattagg ctgggacctg catcccccac
      181 gcatcacaca gcaagatgga gaaggggagg ggggctcagg gaacaggcag cccatttatc
      241 ccccatgaca cccactcccc ttggaagcat aatttatgat gtaatttggg ctgcatccaa
      301 cttaataaag ggacactgca aattagtgaa caggtttaaa tgaacagaag caattagtgc
      361 ttggagaagc ccatcaaaga agttgggcca atatcagagt gaaactgaaa ccatgagcca
      421 ggagcagagg ctggctggcg cgaggcggtg atgggaaggt ggcgtttaat gggaaaggaa
      481 aggaaaccct aaatcataaa gcatgacaag ggccattgtg ggccagctga caaatgaaaa
      541 agaatggcat tattccttta aataacagca gcagttagag agaagacagc tctccatggc
      601 ttgccctcgc ttccctggcc cgctctgctc ggccacgcag gcagcgaaga agaatcagag
      661 gtctttatta attattaaat aatgactccc tctgtactgt gatagataac gctcaatcta
      721 gtcgatggat acaggcgatg gaggctcatc tgtaatgcag cagccctgtg cagggtcagt
      781 gtctcctcgt cccagaggaa agcaatgcca gccagcagca ccaggcaggg tggacaggat
      841 gagcaggatg caaggatggg cagtgatgat gggcagcagg acaacatcag gctgagctcc
      901 atgtgatgct gactccatta ggacagcttt gtctagcggg tggcctcaac tcccattccc
      961 catcctttcc tgcctggagg agccaggagc aagaacacat caacaagagg
//
LOCUS       KCLA01001822             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29608upu ultra-conserved element locus uce-7068,
            sequence.
ACCESSION   KCLA01001822
VERSION     KCLA01001822.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29608upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-7068"
BASE COUNT          159 a          266 c          269 g          261 t
ORIGIN      
        1 agccagcggc tctgttactg cagcgtggct gcacagacag ctggggtttg gggtttccct
       61 gcggcgcgga gcatctcccc ccagagcaag cgcatcggct tcctcctctg aactagcagt
      121 gcgtggaaag taagaggcag ccgcacgggt tagctcggct gaggctccag acctggcagg
      181 ctgctctgcc tgcagccagg aactcgcagg gtggaggtga aggccgtgca agacacttga
      241 ctcacgaatt ctgttctgag ttgtagttac tggtgacttt tgaagcggtg cctgcctctg
      301 gtgctttgtg tcctcggact gaggctgcgg ggagggagac ttgttgctgt cagatgtgtg
      361 tgtactgctc tcggtgtgag aagctgttca ccaggtttaa acctgtcctc ccctccttca
      421 gtaagcgact ctcccagcca gctggaggcc ttctggactc tatcactaat atctttgggt
      481 aggttagaac cgtttcgcct ctgttttgtg catgatctcg ccgtcggtgg tgcagggaat
      541 atgaaccgat gattccagcc tctcttctag cttctgcctt tcttttgttc ttctttttcg
      601 ttctcctcaa cttcctgtct cttccatctt gccgtgtgcc gacctctgac ctttccctcc
      661 agtctgtctg agtctcccct ttcgggacat cagtcttccg atgctgccag gtgaaagcat
      721 gatccgctcg tagcccagca tgggagtgtg ttccatggca gtaacgtgga agctgcctca
      781 gcctccttag acctcgggtg ctgggagcag agcctgcagc tagagagtca gcgagcccct
      841 ctttacggag ggagcgcacg gggtttgctc ttactttcca ctgcactttg ctcctctcgt
      901 agggctactg aaaacaagtc cttgggtcct gtgcttagta gctggagtga agcca
//
LOCUS       KCLA01001823             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29624upu ultra-conserved element locus uce-4200,
            sequence.
ACCESSION   KCLA01001823
VERSION     KCLA01001823.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29624upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-4200"
BASE COUNT          189 a          125 c          108 g          164 t
ORIGIN      
        1 cccatatcct cctgttaaag gagtgactaa ggaatttaca agcccagatg atctatttct
       61 ttgtgtaatt tatgcatcta tttcactttg gggggaaggg ggggagaagc attttttgat
      121 agataagtaa tacaaaagct caagttttta acacatattg cagttctgaa ccacagaaca
      181 atacagcaag cgaaggctta gaccagccca atattcctcc tcacaccagc tcctcagata
      241 gcccaggaca tctcaacaaa cacttgaaat gctaccaaac cctagccgcc acttcacatg
      301 atttatgatg tcattaatgt caagctatca gtggacaaga gtaaaagaga caacagcaaa
      361 gctgactaaa aacaaatagt tttgattaaa ctcaaggacg ttcggtacag ctttcagcaa
      421 aaaggcattc atcatttccg aagctgacct tgtttttttc atcccaaatg caaacataat
      481 atgtggaggg attcctacaa aatccttgaa gtattctgta gctaaattcc cctttttagg
      541 gaaaagtgat taagagcagc cacctttctt ctctgggttt gggttt
//
LOCUS       KCLA01001824            1098 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29640upu ultra-conserved element locus uce-6290,
            sequence.
ACCESSION   KCLA01001824
VERSION     KCLA01001824.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1098)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1098)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1098
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29640upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1098
                     /note="ultra-conserved element locus uce-6290"
BASE COUNT          261 a          273 c          270 g          294 t
ORIGIN      
        1 gcgtactgga tgctaacgcg ggtgtaatgt ctgtgctggc agtgtccttg tctcctatta
       61 gacaatcaat tagtctcaca acattaaaac ccaaaatgct gcaacaggat tttccaccaa
      121 attatttgct aaaggatttc agtgctcccg tccatttcca tctgagcgcc gaggccgccg
      181 ccgctccgcg taacgccgcc gttttggcac caggacagct ttgcaacctc agccctggag
      241 gacatctgga gtcttctggg tggcggcggt tcctccttgc agaaattcgc tcgcctgaag
      301 taatgaatga gcccattttc gctttgactg tggcctgcag actacgagag acattaggag
      361 caatttgtag tcaacgtgcg ggtctgttcc atctaaaata ttatcaatga gcttgtcaac
      421 ccgagcctta accttctttg ttattttcat ctgctcctct ctcagatgtc tctcctcgta
      481 cccataacct ctgaagacta gcaacaggat gtcatacacc tgttttgctc aaggctggga
      541 cttggagccc tgcgcgatat tgtgtaggca ttggctcgct tgctgctttg ctcaacgtat
      601 atgtcagaat gtcagatgat agttgttgta tctgcagctg ttgcatgagc agagtgccag
      661 gggcacaact ttcctgcagt gagctttaat ttgctctccc ctccctgaag agctcccgcg
      721 cttcaccttg ctgctgcgca gctggaggag agctcagccc acgtgcagct gaggccgcga
      781 gacccggggt aggacgtcga gcaggctgaa ggtgccgttt gcatccttgc tcaatgaggc
      841 attttactaa ttgtttgcag gaaggtatcg taaacacgga gggattcaga tcaatctgcg
      901 gtagatttgg atgccgttcc aagagagcta ctggtagcct aaataagcca taacctgcca
      961 agatattcat gagagatctg actaggtttt tgactgctct cagaattagg ttgacaatca
     1021 aaacagatgt agaacgaggc tgcaactgga ttgccaaagg caagaaaaac tcctgtcaaa
     1081 ttctttaaag gagcaagc
//
LOCUS       KCLA01001825            1078 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29656upu ultra-conserved element locus uce-7011,
            sequence.
ACCESSION   KCLA01001825
VERSION     KCLA01001825.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1078)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1078)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1078
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29656upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1078
                     /note="ultra-conserved element locus uce-7011"
BASE COUNT          365 a          189 c          215 g          309 t
ORIGIN      
        1 aatgtgcact aagctacttg atttgcaaac gtaagagtgg atgtacagcc tgaggaaaat
       61 taaaaagaaa gcacatttgt aattttttta aaaaaaaata ttaacaaata ttaacccaac
      121 ttaaggtcta ttttaaaggt tacatttgca tttacaaaga actttgaagc aatttaacta
      181 caatgaattt taacaaggca gcttcctgtc ctcactgtta cctattttta agttttatga
      241 gacttttctg gcagagtttt gtagccgtta agatgatagc ctggatgctt acatacttta
      301 aaagtggagg aggaggaaaa agaataataa aaagaagaaa ggaaaataat caatttggta
      361 tcaaatttat tccaaagccg aaaagtgcat ttttttctga ttgtgaaaga agacatgcag
      421 ggaggtcaaa ggtcaagcaa agaggagaca gtattgtgta ggaactgtca cgcatcacca
      481 cctattttga catgcacagg gccgtttgtt gtctgtcgaa catgcaaatt aagtgcctgc
      541 tgtcatagct agccgatatc tgaaagtgga aaatgagacc acctgtaacc agtgaatgga
      601 gtgatggaca agcattcaga gctcgtcatt tccaacgcca ttcacaccac ctccgaattg
      661 catatgacat gtaaaaatct tttcttaata ttcacaaccg ggaagtttgg ggaattatgg
      721 aggcttcaac tgctgcatct aatgggttct ccaagcagac agctgtgact gtgagctggc
      781 ttgataatta ggtgtccagg aagattttat gctatgaatc agttaaaagg aaaaaaagaa
      841 aaagaaaata atggcaagca aaactcgctg gaatggaaat catattaacc cttgcatgtc
      901 ttcctcagca cttgactttt accattcctg tgaagcaaga tctgcagaaa tcagacacat
      961 aataatttgt cttctgtcgc tgagccacac tgtcttccta ctcagaaaat tgcactccaa
     1021 ccttgtttga tgctttgttt tcctgaggag aatttggaag cattaaatca aaatatgc
//
LOCUS       KCLA01001826             363 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29672upu ultra-conserved element locus uce-4080,
            sequence.
ACCESSION   KCLA01001826
VERSION     KCLA01001826.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 363)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..363
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29672upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>363
                     /note="ultra-conserved element locus uce-4080"
BASE COUNT          126 a           68 c           81 g           88 t
ORIGIN      
        1 gcaaaattct tacctttttc tgggaagtag aagatgggag agaggagggg aaaaagaaga
       61 aaaaaaacta agcgactgtc agatcagctc aggatctcca ttagaatgca gagtgctcca
      121 gagtaattac aaaacagctg taatggaaaa ttggtagtca aacccatttt ccaccaacta
      181 gaacggtgaa tgggctccat tatgttccta attctcatta acttaatttg cataggaaac
      241 aatgaaggaa tacctaatga gttagactca gctagcagca gatcgatacc cctgtgaaca
      301 ggggttcgac ccataattac aggacatgtg gcaaagccag aatgtttctc cttttacata
      361 ggg
//
LOCUS       KCLA01001827            1182 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29687upu ultra-conserved element locus uce-6210,
            sequence.
ACCESSION   KCLA01001827
VERSION     KCLA01001827.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1182)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1182)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1182
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29687upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1182
                     /note="ultra-conserved element locus uce-6210"
BASE COUNT          297 a          307 c          222 g          356 t
ORIGIN      
        1 ggtcactgtg caagttggta gtcagtgccc tctgtcctgg acttatcctt gttcctccta
       61 aaatctgctc atcttctagt cacactctcc ctctcttccc catacttcaa tgtaggctgt
      121 tcctttcctt tatttcataa tggcaaaaca tgacatacag cagcttagca tttccataca
      181 gatgtttctc cgctttgttt gcacaattta aatactctga gtaggcagct gttcagtaag
      241 agagctctaa acatctagaa tcttgacact ttagtgctag ttcagaatta accagtgagt
      301 cactcgaggt ttgcaatcca gctccaaaat tagcaggatt tttgggaacg gacaggttct
      361 cggacccaga ctagacttta agtccgcaac gtggtttttg caggactgag tttacctgtt
      421 gcaggtgagt gaagtcctcc cgagtcaggg gttcgagctt ccctttcgct gttgaaaaat
      481 aacacgttag gagtatttgt tagctaatag atggttgtac tgatggcttg tttttcattt
      541 tttttatgct ttttttggtc catctattaa taaaaatgaa cccgttacag agtcaccatc
      601 atgtctcttc tcaccaccct ctgagtctgc attagccagt caactagccc tttcagcgtc
      661 atgtgaccag cgcgccccat tcagcttggc tggtgtcgtt tcacatgacc caggcatggc
      721 cagtcgtcag gttgcaccgc cctttggttc ccgagcatgc tgttttctct cagccttctc
      781 tccaacctta accaaatcgg cagcagccac ctcgaccgcc cacacattcc cggccaatca
      841 gctcagctgt ttatttacca aatgtcttca caacaactac agcagcagcc ttcggctaac
      901 aaaaaagcag gaaaaatcca caacaccccc ttcgccaacc aactaaatac aacgcaacat
      961 ctggcaaaac cttttcagca aattcttctt ggcagtcagt ccggcagcct cacctcacca
     1021 tttctagctt gttgaaacca aaaactagta agtttttcct gcttatacag tttactgctg
     1081 gttaaaataa ggagtaagcg gcttattagt aattactttt ctcaatcaaa ggctggctgt
     1141 gcataattga gtggtaacgt acctatgttg cttgagaaaa ct
//
LOCUS       KCLA01001828             506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29703upu ultra-conserved element locus uce-5986,
            sequence.
ACCESSION   KCLA01001828
VERSION     KCLA01001828.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 506)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..506
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29703upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>506
                     /note="ultra-conserved element locus uce-5986"
BASE COUNT          156 a           94 c          102 g          154 t
ORIGIN      
        1 actcatcctg tctgtttata ttccgttgcg ttttgctgga gcaacgagct ttaaaaatcg
       61 ttggtattta ggaaaatcca aagctggggt gatgcatgct caggtgctaa tttatttaca
      121 tcaattaatt tcaggcccct gatgtaaacc aattagtatt caacacttaa tggagtcatt
      181 atctgtcaga ttagctttta gaaatgcttg tcactgctac aggaccaggc agcagaactt
      241 tgctaataaa actagcagaa ttaatggagt gaacagcata gataatgact taatgtggaa
      301 cgtacagtac agaaaagaga ctgagcaact gtcttcaatg aatgaagata tcactgagct
      361 tgctatttta gtccaaatat gagctcagat ggaggtcttc agaaacatca gaggtgttga
      421 gctcagcctt cgcaaaatta tgtgttgtaa taaaggattt tcaacctttg tgccctcaca
      481 aactcacgat ctacctttct agcttg
//
LOCUS       KCLA01001829             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29719upu ultra-conserved element locus uce-74,
            sequence.
ACCESSION   KCLA01001829
VERSION     KCLA01001829.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29719upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-74"
BASE COUNT          229 a          162 c          155 g          238 t
ORIGIN      
        1 atcatttggg ggattagagt gtgactgaag ataaatagcg acgctctttt gtttcctctt
       61 actcagttct ggagaccaaa ggagcctcgg gaattaattg cagtcctcta ataagcacaa
      121 tgatgcaagg acgtagttaa cgttactggg ttttgtttgg ttccaaataa atggcagagc
      181 tgtgatacta aaacaattac cgtttgggaa caggataatt aatccccaat tttttcacat
      241 tagatcagat atctctaaag agtgcccaca gatttgatgg tcttcagctg ctggggattt
      301 atttttccct ttccccagcc atgtaccgcc ccatcagtgc tgacatttaa atgagtgagt
      361 attcaacaca aatgtgatca tttgtggagc atccaacgcg gcaccatact gagatgattg
      421 cttctgggag ccatccacgg cttctcgaac aggggggaaa agccaggcaa aattttatca
      481 atttacattt ttctgtgatt aatttttatg caaataaggg cccgaccgtg ctcccatctc
      541 acctgaatca tgcggatcat caaagacaaa ttgagcatca cttatttaaa aaataggctt
      601 taaaatactc tacagctgtg ttggaaaatg ctaagagcag ggcatgaact tttctaatgt
      661 aacaggaata gctaagaaaa tgcttctttt tgcattttgc cagcactgcc atcaccatga
      721 atcttaacaa aatcctaaga attgtctttg ttttctatcc cttatgccct tgtaaacatc
      781 tggc
//
LOCUS       KCLA01001830             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29735upu ultra-conserved element locus uce-5812,
            sequence.
ACCESSION   KCLA01001830
VERSION     KCLA01001830.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29735upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-5812"
BASE COUNT          184 a          119 c          107 g          177 t
ORIGIN      
        1 agctgtgggg ttttgctgtt tggagctgca cactccctgt aaagctagct ccagagctac
       61 aggtagaatg ttcaggaact ggaggtttcc caagccctac taatgagccc attatttcca
      121 tttcctaagc agactactgt agatcttact ctgcctggga gcgggataaa aacagccagt
      181 taatgtacta aaggtcaaaa tttcagcagc tctctacaaa tgcattacaa ccaactatta
      241 ataactctct ccttttttta aggggtctgc tcatgtccaa gggaatgcca gctacatttt
      301 tcttaatgta tgagcacaag ttacacataa caacctaaca acacaatact gcctctttaa
      361 tgctaatcta ttccttgcaa tctactagat acatgtagag tcattggtgt gtatcaagag
      421 agcaaaatca gattctgaaa atatctgaaa ggatgcacta gagtgtacat aataatgtat
      481 tttaatctgc caggccttaa aattaatcat gaattcccac agagatttta ataattttga
      541 gatgaagttc atacagtgat gttcttggac agagttctca aaatgct
//
LOCUS       KCLA01001831             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29751upu ultra-conserved element locus uce-2765,
            sequence.
ACCESSION   KCLA01001831
VERSION     KCLA01001831.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29751upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2765"
BASE COUNT          148 a          159 c          153 g          192 t
ORIGIN      
        1 ctctccttgt tccacaacaa caaaatccat ttatagcaat aacagttagc agcgatccag
       61 cagcctcaga cagctttagg cagcgtctct ccacgaccac ttttgcactg aatgcctctg
      121 tgaaaacaaa acaacaagag caaaagcaaa acccaaagaa agattttttt attgctatgt
      181 tttactttgc tggcagacca gagcaaaggt tttctgaaca tttaaaagat gaaaaaggtg
      241 aagaatccca gaagcgattt atcttgaagc gagataactc tagtattgat aaagaagaca
      301 atcaggttgg ttctcggttc gagagttgct gaaatttgtt cttcgaaggt gggctgactg
      361 atgttattgt tggtcttttg ttgttgctct cctcctccct caccctcctc cccgcctcct
      421 ttggcgtttg tagcatcgag ccctggtgtg gctgcttcag ccctggcagc gttgggtttg
      481 catgggtggt ttgcttggcg caggacttgc tgcatgccca cgggaggggg atgctggtgg
      541 ctctgggcaa ggctgtgtca ctcacgtttc tcaatgtctc gcctgatcgt ggcagtcgtt
      601 ccgctccctt atagcttcct ctttcctcct gtactccttc agagctggat tt
//
LOCUS       KCLA01001832             405 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29765upu ultra-conserved element locus uce-4761,
            sequence.
ACCESSION   KCLA01001832
VERSION     KCLA01001832.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 405)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..405
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29765upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>405
                     /note="ultra-conserved element locus uce-4761"
BASE COUNT           99 a           76 c           82 g          148 t
ORIGIN      
        1 acaagcagat ttgattatgc aaaagttaat ctgtcctgcg aaaaccgacg ctgcagtcaa
       61 tgagtatcag cctggcgagc agttacttgc tggcttctcc ttttttgagc tgttctgcat
      121 agaaattgga ttgtaagcag tgtaataata aggtgttttt tgaattactt gtcttctgtt
      181 ttgtccttgt agatgacagt ttgatttaca tggatcctca ttactgccaa tcttttgtag
      241 atgtcagcat aaaggatttc cctcttgagg tactgtggat atagacctgg cgctgttttc
      301 ttcccatatg aatcaaacac taattattta gagacgtcgc agcttgctgc gtctttatgg
      361 ctttacagtt acatgttatt tatcaaagtg ctgcccttct ttata
//
LOCUS       KCLA01001833             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29781upu ultra-conserved element locus uce-3772,
            sequence.
ACCESSION   KCLA01001833
VERSION     KCLA01001833.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29781upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-3772"
BASE COUNT          292 a          217 c          190 g          266 t
ORIGIN      
        1 tatatatata tatatataca cacacaccta tattcacagg attggattct tccacttcca
       61 cataaaatat accatgtgtt gtcagttact cagattagca agttgatcac aacaatgctg
      121 gcgtagatca catcagcaac atgccactga tgcagggggg gtttcctgca aattaattct
      181 tcatgccctc tttcaaattc aacaaacccc agctcctaag actgtgttta ctaatgctgt
      241 gtattcctaa accgctggaa aaccttgaca aagctgatgt tctgaacaaa gaccacactt
      301 cctgctctcg gcggaatctg gaacaccatc aatgttttgt tcagcttgca taagtcacaa
      361 ctgattggcc acagtccctg tgggcatgcc atttcatcca gactggacgg ttcattagtc
      421 ataattacta taactgtaca gcagagactg cagttttatc tcatcataca tctttgataa
      481 agctgcttct atttctgctt catcagcatg tgaagttaca ttattggagc ttttattttc
      541 caatctgtga ttaccatgag ttgttctgcc tgtggaacct gcatcaaaat tcaagataac
      601 agagagagtg aggccgtggc gtgaccacta cctgaactct gtggtaacac tcatgcagca
      661 gttactgctg tgcaggagga atcattctga agtgactgag ttgctaagaa aatgtaagaa
      721 aacatcaaca ttgcgggttt taagggaaca agactgtttc taatgcaaac tgtgacacgt
      781 tagacaaatc cgtcagctgg gtatgaaggt gagacagggg aaattcctga caactgctgg
      841 gtcaaccaac atttttcaca tacaactgca gaaaagctga gcctgcaatg taaagaaccc
      901 tggtgaaaag tgacagctag cgcactgcac tccagctact aaatggaaac taaaccactg
      961 acatc
//
LOCUS       KCLA01001834             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29797upu ultra-conserved element locus uce-1319,
            sequence.
ACCESSION   KCLA01001834
VERSION     KCLA01001834.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29797upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-1319"
BASE COUNT          276 a          133 c          202 g          253 t
ORIGIN      
        1 ttgcacacgt aatcttagca cttgatcttt ttaattacaa ggcacatctt taattaaata
       61 ctcaattagg cataagcaca tgcaagactg tggatattga taatccagat gttagtatca
      121 aaaaagaaca atatgcttat tcatatttgc agtaataaaa cttgccttcc actttatggg
      181 acagcgacag aagatcgact ggcaatggag cagcatgtgg taactatagg gagactttct
      241 gccatgacaa ttaccttgag gcataatgtt ccttgaattg tgacatgcag aaattgcatc
      301 tccgtcgttg taattgagga agattgctga aggttttata ttcatgtggt gatagatggc
      361 tctttccttt gcagccaaac gggcaaaaag ttaatggcga agtgtcgaat gcttatccag
      421 gagaatcaag agcttggaag gcagctgtcc caaggacgta ttgcacagct tgaggcagag
      481 ttggctttgc agaagaaata tagtgaggaa cttaaaagca gtcaggatgg taaggggttt
      541 ttttaagaaa atagaagttg ccttgtactt gggatagttt aattttttta tcataaagat
      601 actgaaaaac cagaacaaaa gggcaatact gggtaaaata agacatgtgt aagttttcac
      661 ttgtagtctt aagaaattct taaggcaaac ataacttggt gggacaggtg ggatttgcag
      721 cctcagtatt gcagtgtttg gagttaccag attttgtgct gtaggcctcg ctaattaata
      781 gggaatactg agactgaact cgttattggt ggattgataa gaggaaagct gttaccattg
      841 catgaaacta agcatgcact gaaa
//
LOCUS       KCLA01001835             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29813upu ultra-conserved element locus uce-7589,
            sequence.
ACCESSION   KCLA01001835
VERSION     KCLA01001835.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29813upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-7589"
BASE COUNT          258 a          177 c          228 g          282 t
ORIGIN      
        1 tctttttact ttctaggatg tttagaccta tgaatccact tgcctgaatc tagtgttctc
       61 tcaggcattg acacaacttt ttctgctctt cgctagccat atattgggtt ttgaagcatt
      121 tgggtttaca agagtagttt tcttatagtc ccgcactcta gtatggaatc attgtcgctg
      181 tcaaagctgg agatccagca gcctctgatc actgtataca gagtagctgg tagaacccag
      241 aaagaaattg tcctttctgg tctgccatgt gttctgtctc ttccattgct ctgatgtaat
      301 atccactaga ggaccatggg gaaagcttgt ttggggatag cagtaatgtt atatttaagt
      361 atgctttaaa aaaaagaaaa agggcaggaa gtttctttag tttggcatgc tctgtcagag
      421 gcaagataat agaatttcta aacccattga ttttatggca ttaagaatct gcttgataag
      481 tcagtctctg tacactggtg atcactatct ccagctgtat aagcagtact gtccccattt
      541 cattttcaat aagaaattga gggagactga gcgttgctgg aaaatatggg gaaaataagc
      601 agcataaaat ctctattggg gtatggcata actatgtatt atttaatact gtaggggtca
      661 gagagaaaca aagttggaag aagcactagc aaagaattgt taatttgagt gcaaggctcc
      721 ctggtaggca gtgctgggag gtgcatgcag aagctctgct tggctttact ccagcaccac
      781 ctttgcaacg ggcagtttca gatcagggga gcttcaggta ggagatactt atggctactc
      841 tgagatttgt gtgaccaacc caggagcagc tgctctcagc gggagtcatt gcagggaagg
      901 aggaaggagt tcctggttcc ttgcagccca gtgtacaaag cacat
//
LOCUS       KCLA01001836             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29828upu ultra-conserved element locus uce-2066,
            sequence.
ACCESSION   KCLA01001836
VERSION     KCLA01001836.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29828upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-2066"
BASE COUNT          126 a           67 c           48 g          123 t
ORIGIN      
        1 aagtattaaa tattaacatg ttttatttta ctaaaaattc cactcatgtg tatgctcact
       61 tactgctata cattctagat aaacagatat taatttcata attaaaagta atcttgtgta
      121 aataccccgc aggcctcaat gaatcaaaca catactgtgt gtcaggcctc ccactgtctt
      181 caagtggaat gtactggctg gataattaga tagtacatat tttttaacct tatttgcatg
      241 catattatat cttttgcaca ttgacaagca gcagtaacaa caaaagtcag attaccacag
      301 ggaattccca caaagaagtc ttcatttctt ataatttgca gcctaaatta aaataatttg
      361 atct
//
LOCUS       KCLA01001837             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29842upu ultra-conserved element locus uce-2166,
            sequence.
ACCESSION   KCLA01001837
VERSION     KCLA01001837.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29842upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-2166"
BASE COUNT          221 a          166 c          164 g          244 t
ORIGIN      
        1 tatataggtg ggtgctgagg tgctgcagtg tgcctgaaag ctcaggaatc ccagctcttc
       61 ccttgaaagt ttgttctttc aagtagccat taatttgttt ggctgcatag agagtttaag
      121 ttggtttgtc attttctttt tgcttctcac accttatcca gtttccacgt tcttcccact
      181 tgggtagtca aagtgattga aagctgaaaa ctgagcagat atgtccccgc agcaactttc
      241 ctcatatttc tcatttaccg tttcatcaaa cgggctcttt gtctctgcag ttccctgatg
      301 ttgcctctgt tacacagaga tattcttcag gtcatggggg ttaaaagggg gctaaaaagg
      361 agatcatatt ggacttgctt tacacagaca tgtagcatta cacccaacgc ccaatagagg
      421 aaagatatac tactcctatt tgatgagcag caggccaata aattcattaa tcatcatttt
      481 atgcctcatc aaacacttcc caagttcctc catgggagtt atacaaatta gccactgaaa
      541 aggcagtaat tttagtttag ctaggtaagt gctttttgat tgccttcctg aacaatgctt
      601 cccttgacaa gctaataaat cagccctttc tgaatcagaa gtgcagcaag tgcgaacaat
      661 aactccacat agtttctgca ctgatttcag ctggaaggcc taagaggatg atctgggatc
      721 aaagtctctt agtttattgc agagcaaaag ctttctttat gaagaagagc cacagagaaa
      781 taagggaagt ggatg
//
LOCUS       KCLA01001838             204 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29856upu ultra-conserved element locus uce-2193,
            sequence.
ACCESSION   KCLA01001838
VERSION     KCLA01001838.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 204)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 204)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29856upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>204
                     /note="ultra-conserved element locus uce-2193"
BASE COUNT           77 a           27 c           47 g           53 t
ORIGIN      
        1 acaaaaccag aaaaggagtt aaaaaaaggg taaaaagcaa gagtgaaagc catctgcctg
       61 gaagcattgt gtaaaacata cacacagtgt tggggaaata agccaattat gtgtgcttca
      121 caggaggtgg gggactgacc tttgtgtata attagttctt ttatttaaag caaagatttt
      181 gaatagaata actaattagc tgtc
//
LOCUS       KCLA01001839             229 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29871upu ultra-conserved element locus uce-6188,
            sequence.
ACCESSION   KCLA01001839
VERSION     KCLA01001839.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 229)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 229)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..229
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29871upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>229
                     /note="ultra-conserved element locus uce-6188"
BASE COUNT           55 a           67 c           40 g           67 t
ORIGIN      
        1 ttcttccccc cccccgttat aaattttgca tttccagcct gcttgtcata tttcctaccg
       61 gattgggtgt ttaattaaaa tcataattaa aattgatctc ctcattagca tgcacctgct
      121 ctgctgctcg cgtcctggca tttaattatg cgctgaagat gtcaactctg acaggcgaga
      181 acgagacctc ggccagcaac ccctgacagg acttccctgc aacaacatc
//
LOCUS       KCLA01001840             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29887upu ultra-conserved element locus uce-4884,
            sequence.
ACCESSION   KCLA01001840
VERSION     KCLA01001840.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29887upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-4884"
BASE COUNT          300 a          200 c          181 g          262 t
ORIGIN      
        1 aggagagaag ctttggagac atgagggatt gtccagcata acttaacccc attctgatct
       61 acgtgattca tcccagcact gtgagacagg ctgcaacttc taaaactcct ttgtgatcaa
      121 aagagaaact tataaaccag ctttattttt caagaccaca tcagtctggg ttatttttgg
      181 tgaccaaaat ggaaacccta tagcacaact gggaacaaca tcacaaatgt taacgctaat
      241 gcacgaggac ttctatttac ttaagtactg ggaacgtaca acccaggttc catcagacgc
      301 taaagaataa actgcagatt ttatccagtg ggtctttgag caccaatgag gagtaaatga
      361 tttgattttg tgagctctga ggatttgtca gctgcctcat aagtataatt ctgactcttc
      421 attttcctgc tgcttctaat ttagcaggac aggctcataa ttgaagcaaa ttaactattt
      481 acacttgcca cttctaccag gggaagagga cacatcagca ggaaagaatg agtaggaaat
      541 taaattcttc ccacttgtgt cagatctgcc cttatataaa cacattaaca gtaatttcat
      601 gaggcgtcaa acataggaat aaatacagag ggataaaata atgaggtgtt gctattgaga
      661 tgaactgttg tagctaatat tactgtgtat gaattatgca gtctgaaaga aagcatatgc
      721 tacagcactc caacagttgg ttcgccagct tcttctaagc gttaactttt gggcgaatcc
      781 acccttcttc cgctacaaga ccagtataac acttcagtaa acacacacac acacgtacat
      841 ccacacacaa ggctcttcat aggaggccaa actcattcct actagaattc cagtaaagtt
      901 gctgatgtcg caccagagat tcattttgtt gcctgtcgaa tag
//
LOCUS       KCLA01001841             964 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29903upu ultra-conserved element locus uce-6695,
            sequence.
ACCESSION   KCLA01001841
VERSION     KCLA01001841.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29903upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>964
                     /note="ultra-conserved element locus uce-6695"
BASE COUNT          267 a          161 c          198 g          338 t
ORIGIN      
        1 aagctttcta agcagctctc tagaacgtac tcgcttaagg tactaatatc ctttatctcc
       61 ttaaaaatta aaaataaagg ggtttttcat gcttctgctt agagtcagtg aacaggatcg
      121 tgcgtttcca ttgtttgctt tcttaacagt gcactttttc tatgacctaa taaaattgta
      181 ttagtaacat tagctgagac ccattagagg gaaataagag tttacttttg tgtgtaattt
      241 agaatacttt taaacttctg atataaatgg gaataagctg taaataattg ggggtgtggg
      301 ggtttttttg ttgtcttttc tgtttttttt gttgtctttt tgttatttaa gtagttggta
      361 ttacattttc actgctgctt gattttgtgt ttgtagagcc agaatgaaga ctggggaggt
      421 ttgtctgagg atatcttatg attaagagca atctaaggca ttagcccttt tgacccccat
      481 ctaaatgatt ggtaactacc aaatttacca ttttggtggc atggattaaa tgggtgctat
      541 gcaaagactg ctgcacgtgt aatcaagtcc ttgcaagggt aaacagaata tgggtgacgg
      601 gcttaacttc ctgcaacact tgcatgacca tctctggaga gtgctttgag tgttcctttt
      661 tgttttcctt ttttatacta accgcatcaa cttgaagtgt cttactcctc ctagctttct
      721 gcggtgtcga taattaagtg gcatactgca agttagaaat ggataccaaa actaataact
      781 aaacagatgt ttggctttgt ttacttacaa tctacccaca taaacatgta tttactggaa
      841 aacgagctgt ttacatctgc tgtgcaaaga aaatgggccc aaaaaagact gggtgctgct
      901 gcaattgact atatcaagtg ccggatgctg catgacagaa caaagcttat ttgcatatat
      961 agtg
//
LOCUS       KCLA01001842             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29918upu ultra-conserved element locus uce-2941,
            sequence.
ACCESSION   KCLA01001842
VERSION     KCLA01001842.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29918upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-2941"
BASE COUNT          202 a          107 c          135 g          223 t
ORIGIN      
        1 aagttttggg gacagatttc attgtaaata aaaatagaaa agaacagata ttaatgtttg
       61 tggtcagtcc ccagcaacta cactccctaa tgcaaaccaa ttgcattttt acctgaaaag
      121 tatgacagat agctaaggca ctaatgtttt tctctgttaa taagctcgat atggaacaga
      181 gctcctttag aatatgtacg gtaaagtgga aatgcatgct ttgttgactg ttataaagca
      241 ggccaaagat atgtcaagtc caattaatgt caataaggaa catctgtatt taggcaccca
      301 agttacttaa tgcaaacatt tcataattat atactatagc acacatggag cattatgaga
      361 tgtggtgtcc cagtgtgaat aatattcaca tttttcagat cagtcagcag tcttggtctg
      421 gctttggctc agcttgccgt cgccccataa gagcatttct ttataatatt gaattaagta
      481 caatccacat tttttctctt atctgtgaaa tcttgtggtt gtggcttgac tgtttttata
      541 aaatgaaaga tccaagtgca tgtaaagcta ggggtttggg ggcttttttt ttttttgaga
      601 catctgggtt ttttcttgta tgccttgaga ctgagaagga aaggttcaag tggatgaagc
      661 atatcat
//
LOCUS       KCLA01001843             679 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29932upu ultra-conserved element locus uce-5505,
            sequence.
ACCESSION   KCLA01001843
VERSION     KCLA01001843.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 679)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..679
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29932upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>679
                     /note="ultra-conserved element locus uce-5505"
BASE COUNT          193 a          126 c          121 g          239 t
ORIGIN      
        1 gtttaattaa ggaaaaaatg actgcactga tatttagcag caagactgtg aagcagcttt
       61 caactttttc ttctgtgtct ttctgatgca gtttttcttt tcctttcctt tcctctcttt
      121 tcctttctgt tgttcctttc cttttttcct tttctctttt ttctttgctg ctgaactttt
      181 taaaagaggt ctctaattga agagagatgg aagccaggcc tgccaaagga tggaaatcca
      241 taatatggat gccagtgaac ttattatgaa ccataatgtc cccaatgaca aaggaatcaa
      301 agagagaacc accgtaccta gcagtacagt acaacacgat gaactgactg aatgcagtat
      361 taggtttcat aggagcagtc tctaattaga cgactaagcg acgatgcatc ggctgcttct
      421 tatcattgca ttttccatct agatcagtta cagccatttg attccttaat tgttttttca
      481 agtcttccag atatttctta ggttagctac aaggtaactt tttcagggaa tagtttaagc
      541 tttattcatt catgcaatac taaagagaaa gaaatactgc atttttgtgc tggcttgaac
      601 aatgatgaac aataatgaag gacaaatgaa tcctgaagga agattttttt aaatgtttcg
      661 tttcttctta ctaacggag
//
LOCUS       KCLA01001844             252 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29946upu ultra-conserved element locus uce-5240,
            sequence.
ACCESSION   KCLA01001844
VERSION     KCLA01001844.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 252)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 252)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..252
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29946upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>252
                     /note="ultra-conserved element locus uce-5240"
BASE COUNT           95 a           38 c           35 g           84 t
ORIGIN      
        1 atgatattac agtaaacatt taactatttc tagaatgtga acctaacatt ttaaacatct
       61 gttagttact tatatgttga aatatatgca aaaatattta gccaaattga agtcttaggc
      121 ccatgacaat catctcaaca cagtgggtag ttctgaaaat taatgagaat gataatactg
      181 taaagactgt tccagagttt gcccaaattc attatctaag actcttgtta agaacatctc
      241 aaagaatttt aa
//
LOCUS       KCLA01001845            1040 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29962upu ultra-conserved element locus uce-4117,
            sequence.
ACCESSION   KCLA01001845
VERSION     KCLA01001845.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1040)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1040
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29962upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1040
                     /note="ultra-conserved element locus uce-4117"
BASE COUNT          334 a          192 c          192 g          322 t
ORIGIN      
        1 taaatacagt gccaatgtgt catgttgtag aagagcatac aaagaagaca aacaatgata
       61 acttaatcat ataaaatgac acagctgaaa tacagtgcac ttaaatacct atgcgacaaa
      121 gaatgttaca ttttgtactt agtatttagg ttgttttaaa cataaaatct gaaaagtctt
      181 tgtgcttaac ctttttttcc tgttaaacag aattagttgc ttacttccaa tactgccact
      241 gtaactgata ttacaacaga tcacgatttt cacagacaca tcaacattaa aacatttacc
      301 tatgagaaaa taagtcactt ctcattagtt cacagtgtga aaaagtggtg tacgctctgt
      361 cttgagaaag gctttcagtt attcatcaag ccagttgcag aaagtcctga taccagacgc
      421 agtgctagat ttaaagaatg gaaagcaaca catcacatgt tgggaggaaa aaaaataaat
      481 gtctcgtttc ttcatggata tcgtctaagt gaccttcgtc ttctgttgta gaaatgcctg
      541 agcccatgtt gccgtgaaaa attcatcata taattttgtt tgcgagtgct gttaaaatca
      601 aaggatggag aaagagaaga gtgtcagttc cttttataca tacttcagat tcttctggaa
      661 cagtgagcta gtgggacaga tcattctttg tccttgcatg accttcaaga ctctggaaag
      721 tagtttgaaa cacactttgt ggagcagcaa ggtacaaggc aatcgagaat ctgtcccact
      781 ttgctcttat ttacaaatca ttatcttagg aaaaagttaa gaaatttcag ctaatgaaaa
      841 cttgggctgc ctagggccag attcactaaa gctgtatgca cttcattccc ctcaatgcag
      901 ggcatttatc tgcaccggtt ttatactgta gttatctttc tgtcttcact gctttatctt
      961 aagcacagaa ggaatgctat cttccacctt tatcacgtag gaagtgaagt acaagatatt
     1021 tatgcagggc taatgtttcc
//
LOCUS       KCLA01001846             275 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29978upu ultra-conserved element locus uce-5106,
            sequence.
ACCESSION   KCLA01001846
VERSION     KCLA01001846.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 275)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..275
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29978upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>275
                     /note="ultra-conserved element locus uce-5106"
BASE COUNT           59 a           91 c           62 g           63 t
ORIGIN      
        1 ctcccgccgc actccgatcc gatccgcgcc tccgctccat ccctcccgat ggctctgccc
       61 ggcgctcgcc tcccctctga cgcactttaa agagtctccc ccttcaacct caaggcgagt
      121 aatagcgacc aatcatcaag ccatttacca ggcttcagag gaagctgttt atgtgatccc
      181 agcactaatt aggctcatga actaacaaat cgtttgcaca acttgtgaag gggccgatca
      241 catccatgga ttgtctttgg acttaggggg ggcgg
//
LOCUS       KCLA01001847             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 29993upu ultra-conserved element locus uce-3815,
            sequence.
ACCESSION   KCLA01001847
VERSION     KCLA01001847.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="29993upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-3815"
BASE COUNT          247 a          163 c          198 g          217 t
ORIGIN      
        1 aattaaatag cagcagcttt gtcaggtctc acagcctcca ccaacccact tttcttcagg
       61 tgaccagtct catcacaaag ccttgtggct tcctgagcag gttatcagca tctgaccttc
      121 tgtgacagaa cagatggcaa gtggttttga ataagcatcc ccagatatac agtgagaagc
      181 acaatttccc aaaagtcaca gtgaagggag aggaaagggc tgatctaaca tgttttttaa
      241 agctcctaat tgagggaagg agaaaagcaa ggaaagataa ctgtccaggt gggggaggaa
      301 gaaaaaactg agtcttattg cctgggatac ggtacgcctc tgaaactgct gagagggatg
      361 tagtcgtctc tgcaaatcaa gatgagctgg ctggccaatg aagcatgccc agcattttat
      421 ttctcatatt gtttggagat agggattcag ctgagtgcat tcagcaaata aagatcaaat
      481 aacctgctgt gaataatgtt ttaaacccgg gttcctatca ggatctagtt ataagcccat
      541 atactccatt ggataaaaaa taagttacac atggctggag gcagtattac tttctatgga
      601 agatgaaatc tgttttgaaa tagaaaatgt ttagtgattc ccccctcttc ttttattttt
      661 tttggaaagg ctaaaccaca taaagctgcc tgacagagag ggtggaggaa gatccaccaa
      721 tatttcaccc atcgcctctg ggtccagagc taaggattta ttctaaaagt ggtgagcccc
      781 aggaggacag atgaggtgga gcccaggtcg ctagctggtt tggct
//
LOCUS       KCLA01001848             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30008upu ultra-conserved element locus uce-1834,
            sequence.
ACCESSION   KCLA01001848
VERSION     KCLA01001848.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30008upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-1834"
BASE COUNT          257 a          137 c          146 g          315 t
ORIGIN      
        1 agtgaaaagt tctctttgaa tttacaaaaa tccatttaac agatatgact agtacacatt
       61 agcaagcaag tggaatggat gcactcagat tttattttac aagtacttgt gcttgacaaa
      121 tgtgattttt ttttaagaaa ttttttcttc aaatgtgggc tgggtagatt gctgccaggt
      181 tgctctggtt ttgtacatag tttctctaaa tttgttttaa ataccacaca atttgttgaa
      241 gccttcagtt ctgtcaatta gataccataa aatagcatat tctgttaaca ttcaggaaat
      301 gacatcaagt cttttatttt tatttttggc tcaataaatt tttaaatgta tgtttatcat
      361 aacctaatat tgtctttgtc ttcactgcag tggatttccg atcaaacttt tccccttctt
      421 ttaatacttt agggaatttt caaacgtcgg gatgtttggc tgtaatgccc catgatttgt
      481 tctccctgaa agaaatcata gtgacaattt attaaactac agagcaacct ggcttttcgg
      541 ggtctgcaat tctattttgt gttcaatata cctagcatta agtcttgaat catttaattg
      601 gttatatttg tcatgcaatt ccctcagctg ctatttttct ggctttttta gaagtctaag
      661 atagggtttc aatatcaaat cagtggggca ttactttgca tgttcaaaaa ggaggttaaa
      721 aggctaagat ctaaatcgca caagcagtag catatacatt gaatatggag aaattgaaaa
      781 cctaagaggg aaccatattt caaaatatgt aaaaggtcac gtttccatgt ttaatagcaa
      841 ttgttctcag gtacc
//
LOCUS       KCLA01001849             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30024upu ultra-conserved element locus uce-6790,
            sequence.
ACCESSION   KCLA01001849
VERSION     KCLA01001849.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30024upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-6790"
BASE COUNT          219 a          152 c          204 g          266 t
ORIGIN      
        1 atggatctga ctctgcagcg caattcatag ttactggtac ggttatggtg ttctggatgg
       61 gaggttcatg gctgcagcat ccccttttta gtactttcat ggagggattt ccttagttag
      121 tagtccagtt tgaacagtgt ttgagatgaa aagcaggcaa attgctcttc cctgtgggtg
      181 ttaggcagca aattagtgat acgtaaataa actggaagga aaagttagct gtgcattgcc
      241 atccactaac atgcatttca cactttttct gtatagtttc agcagagcgt gagtgattgc
      301 ctcctttcct tacagataga tcttgccagt ttgtacatca agtctggtgc caagaacatg
      361 cccagagtgt ttttgttgac agatgcccgg gttccagatg atcgcttcct tgttctgatt
      421 aatgactcgt tggcatcagg tgattagacc tacacatttc ttgaaagatc ttttccagtg
      481 acaaatgatc tgtgctttca ctgaacttta ctttttcttt ctgttatttg aaggggagat
      541 tttagagagg tcaacccatc caacttgagc gtaacttaag aaagcattga ccgttgggga
      601 gactaattgc tgaggcttat tgtgcaaaag tggattgatc tggagagaga taggaatctg
      661 tctctgacct aatgccatgt ttgctttggt attatttcag taacttcaca cagtgtcttt
      721 gtgacggcac aagtgtaacc gtcagcaatt aaacaatctg gattctgaat gtggggatct
      781 ggaaacagag tggaagaaaa atggggctaa tgacatgctg tgtagtggaa gagcatctca
      841 a
//
LOCUS       KCLA01001850             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30040upu ultra-conserved element locus uce-1466,
            sequence.
ACCESSION   KCLA01001850
VERSION     KCLA01001850.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30040upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-1466"
BASE COUNT          216 a          105 c          145 g          187 t
ORIGIN      
        1 aaatagtagc ctgggttact cctgaattaa cacccttctc atttaagttt ccaaacagtg
       61 tatctgccag aatatttttg caaagaatat agactgtgtt caactttcta attactggta
      121 atgagaagat tgaaagttat ttgaaagaga cagcaaggga ccgctttcta gatttgcctt
      181 tgctcatgtt atctaccaaa cctgttaatt ccatgatgac ctgtggggag gggggaaggc
      241 acagtttact tatacagatg ttaaaatggt gcatgttcag aaggcagttg cagaaatcca
      301 ttctactcat tctctgtgtc aggatctttg ctttgtttca ttgcagtaaa ctgtgatcct
      361 aaagtccatc aatatgaccg aaagaagttt tggagttgag aaggaatcct tgagtgctgt
      421 aaaaaaaacc caaaaccaaa accaaacaaa accttaaaaa aaaaacaata aaaaaaaaag
      481 atataaaaaa tgagtaggag ggggtgtgat tcatagtaat ttgccggggt aacagttgtg
      541 ggtatagggc aagcagtggt cagctgatga gctttaggca ttttgatccc tttagtcatc
      601 ttgaatgtct gtcagatgca ttaagtgaaa ggaggatgaa gggaacattg ccg
//
LOCUS       KCLA01001851             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30056upu ultra-conserved element locus uce-7516,
            sequence.
ACCESSION   KCLA01001851
VERSION     KCLA01001851.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30056upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-7516"
BASE COUNT          148 a           97 c          100 g          179 t
ORIGIN      
        1 aataaacaga aatgtgtctg tatatttgct gttttttttt tcctttggtc atcataatca
       61 agggctatta cagcaataga tcttatctct ggaaaggcag tccccttgca ccttcagttc
      121 agatttttgt ttatgcttgg ttgcaattgt ggctgtttct gatagtttta ggtcagccct
      181 gacagactat gggtgacact aaataaacaa gctgggagtc tgggacaagg aaggaatgat
      241 accggtgctt ataagttgat tttctctcat taatcaacat ttttattcaa aataaaccac
      301 tgtgtaaagt cactgttcgt ctgactatac atataaagct gtaaggttta aaaaaaaggt
      361 taaccccccc tcacttcaca caggcaagca gaaagaacaa attatgttct gtcttgcttt
      421 gggttatagc aggctacaga ggtttgtttg gttaatttat gttcaactat ttcttcctgc
      481 ctccatctct cagttaaatt ccatcagagt aagatgatct gagc
//
LOCUS       KCLA01001852             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30072upu ultra-conserved element locus uce-3689,
            sequence.
ACCESSION   KCLA01001852
VERSION     KCLA01001852.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30072upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-3689"
BASE COUNT          210 a          133 c          135 g          241 t
ORIGIN      
        1 atttacagtg tatttacagt tgccatttat aggccaccag tttttttctt gcaaacttta
       61 atttaataac tcttaatatc ctcagctgct ttcacgcaca gtgtgcttac tgaactaaag
      121 ccttctattt cctcctgaat agaaaccact cctgcccaga ccttgtgcga ccagggattt
      181 gagtgcagta gacaatttca aagactgctc tttctattta acaatcggtg cattaggcta
      241 aaatattcac acagatgcac tagcaattga aagggtgtgc agtgtagtga caaggtcctt
      301 ctgttacctg gaactgtaga atgatgaatg agcattagtg gaatattctt ttggccttta
      361 ggtttacctt gatcttctca cagaatgcaa attgacatta tacccacatt tctatagtat
      421 ttattactgt ggtcatgatg tgagggcttt tttcaatatg aatagtgtaa aaggggaaac
      481 atattactgc aaagaggcat tattgtgctg ggaatgtata aacagttgag aagaatggag
      541 cgacatgctc ataatggaaa ctgaaagctc ttcattttgt cctgattgtc tacccttcct
      601 ttttaaacaa ccttcttttt tcctagctat caatacaaag ttctttttgg taaaatgaag
      661 tgcattcatg ttgcctgaaa gaagctttta aagttgatct gtgctcacac aaaagagag
//
LOCUS       KCLA01001853             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30088upu ultra-conserved element locus uce-4855,
            sequence.
ACCESSION   KCLA01001853
VERSION     KCLA01001853.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30088upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-4855"
BASE COUNT          181 a          107 c          141 g          171 t
ORIGIN      
        1 tccaccatca tctcccaccc cctccttctg tcacctcttg aaaaggtttt gcagactaga
       61 actgttcttg aatttagcct aattggaagg aaacgcaagc cccgagtctg ggttctcatt
      121 ggcatggaga cacttgcgta caatcacggt atgcaaagca gcagaagtct gaattcataa
      181 ttggacgttc caaaatgtaa ttatgaaaga tgaaatgctc ctttcaatga gaaggctgta
      241 aatagaataa ttaattttgt gtttgcttga acaattctgt attatggacc ttacactgga
      301 actgaaatta attaagtgca ccaggattta tggaggaggt gaagagagag ggaaagaaga
      361 gaattaatct gaagtaaaag atagatgact ttgtgagtgt aatgatgcgt tagtctgggg
      421 tattctttaa caaatttagc aggcatgttc tgggtacaaa cagcactcac tgacagaatt
      481 atctcgacta atgcagctgc tggacgctga gcaaattgag attgcagatg agtactttag
      541 atttagagct attaaccctc tgtgtgctgg caagtgtctg tctgctcact gggagcaggg
//
LOCUS       KCLA01001854             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30118upu ultra-conserved element locus uce-5111,
            sequence.
ACCESSION   KCLA01001854
VERSION     KCLA01001854.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30118upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-5111"
BASE COUNT          162 a          190 c          238 g          126 t
ORIGIN      
        1 agggtgtctc ttcttcttgc ggaggcagac agcttcgtca ggccacagta cctgagagct
       61 gggagggtgc tgaacctggg aggcagagcc atctgcagag agagagagaa ggcaggtggg
      121 actgtggcca gcggcagaac cctaaaaggg aggagatagc catccaggcc ccaaacccgg
      181 ctgctgggta ccatggaaaa ttcaattcac actcaaaatc caaaccaaac aaggggatgt
      241 ggtctggagg cagagggacg aggaaggaga cagcctgtgg atgggcagcc ccagagacac
      301 cctagtctgg agtcgtcccc aggcttggac acccctgagc cctgcccatg gcgtgacaaa
      361 ggggatgctg tgggggccgg cggggtcctc gcactcactg gattgttttc tggatttcga
      421 ggagcccttg gatgactttt tgggcttctt tatccgctgg tatttcagag cttcgagcct
      481 ctcaggtgca gcagcgtccc cggacggaga tggatttttt ctaggaagga aaagcagaca
      541 cgcgccatca gcagctcttg gccacactcg gggctctgga cgtccccggc gggggatcgg
      601 ctgaccccag ccagctctgc catggaaaag gaaaaggtga gaaactcaag gccagccaga
      661 cgtgccggag cgcagggagg gagcgaggtg cctgcgggtc tcctccacga tgccca
//
LOCUS       KCLA01001855             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30132upu ultra-conserved element locus uce-6756,
            sequence.
ACCESSION   KCLA01001855
VERSION     KCLA01001855.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30132upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-6756"
BASE COUNT          239 a          109 c          114 g          201 t
ORIGIN      
        1 taatgaattg tgataattaa aagtgtctaa ctcaataaaa atctaaactt tcatggataa
       61 aatagaaatt atcatccata gtcttcaaat acaatctgtt tgcaattacc aaaatgaaat
      121 aatatatatt agatttttat gggttttaaa tgacattttg tgcttcccag gaagttcttt
      181 ttttaccttt tctctaagtt agtaaaagcc tgaggtctat tagtaactgc aaccccccac
      241 tttcaagcta attaaagtag tagaggcttg gaggtttaat tccccagagc tgaagctcag
      301 tatgagaaag gtaatttgtc tgtccagaac aaagattagg gagcagccag caagcatatt
      361 taataaatga gcatcaaata tcttctacta tggacaccaa caacaccaat tatgtaacta
      421 caagagaatt gttgagtggt atgtaaacta gaagattttt aagatctttg ctgagagacg
      481 tcatctaact catactttat ttaaaagtat agaagctgaa gacaggtgtt tgctgtgaac
      541 actgtcaaag gtggaaaatt cacactttaa gtaggtgata atactgttgc aaagaagact
      601 acaggcatac ttccattacc aaaaaagcat agagaattcg tgacaacaca gccccttcaa
      661 atg
//
LOCUS       KCLA01001856            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30148upu ultra-conserved element locus uce-7701,
            sequence.
ACCESSION   KCLA01001856
VERSION     KCLA01001856.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30148upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-7701"
BASE COUNT          333 a          187 c          181 g          306 t
ORIGIN      
        1 agatttgcta tgtatgtaat tctaaaagag aagttacctc aattttagct cagacatcgc
       61 cttttcagac aggagcacta gaaaactacc agtctctttt gaaactgttt ttttacaagg
      121 agagacctgg tccaaacacc atcagaggca caagatcata atgcagccag taaataaagc
      181 cgctgggctg aggtgctcac catctgggtc aggcaactgg agtgggatca atgtcagata
      241 taagtaaacg aggcagaaaa ggagaattgt gaccactaag caaagaaacc tataatgcac
      301 ttcttacaga gcgctgtaaa attcacattt attttgtaag tatgagatag atgggttatt
      361 tctacataca gaggtgccca actaaaatca agataagtga tattaatgtc ctatggtcag
      421 tattattgaa cctcgaaagc aataaactat gagtcgataa atattacatt tgcaacatag
      481 ttaacattct tctactgtct ctggcactta ttacacattg taaccgcaag tctacaatac
      541 attattcata tttggggtgt cactgagtga tggattgctg taagagaggc tgtcctttaa
      601 ataaatcaac aaataaaaat gcaaatgtta acattttcag ccacaacttt ttccatcttg
      661 aatggggaat gaaaatttca cattatatcg acagccagca gagagaacaa ttaacaacct
      721 acactgtgaa taagagagat taatttgcca acgtctggtt ttatcacttg catatggaac
      781 tatattggac tttttgtgct gctggctttc tcagggacta ggcaaaactt gcaactccta
      841 ccacattcag cacctaactc actattatgc tctaaaaaaa cttgtaatcc ctttaaatgt
      901 tcctaagtta gatctagaat taatttcttt tcttccttat ccttcttttg aatcctgaat
      961 ggtgtcttat gctaaagggg aaaaaactaa ttctgtttat ttggaag
//
LOCUS       KCLA01001857            1039 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30163upu ultra-conserved element locus uce-2287,
            sequence.
ACCESSION   KCLA01001857
VERSION     KCLA01001857.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30163upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1039
                     /note="ultra-conserved element locus uce-2287"
BASE COUNT          259 a          291 c          209 g          280 t
ORIGIN      
        1 catgctggga gcctgcgata gaagacactc tgcacaggcc aactatccta attacgctat
       61 gattttacgc ccagcaggaa acttctgatt tgccacccag gaacaaagct aaagaaatga
      121 tctaaggtag ccaattaaag ttttcataaa gaaaccctca tctcgtctca gaacccaaaa
      181 tctcctttta tagcacaatc ctcttagcac ttatctctcc cttcctcatt aatccagttt
      241 cacctagctg gcactgccac acgtggaacc ggggagggcg atttgctcgc acacacacac
      301 acttggcttt ttcctcctgc ttttcttgac ctttcagctt ttccagcagc ccacctgtct
      361 ggccgctctc ccctgcaacg tgcccttcaa gatgaaaacc acagtctgag aagctgtggt
      421 gacaaacctc atagggagca ggcaggcgag caaaagggag agaaagcgca gagggaaagc
      481 gctgctaacc aggatctgct gctgctcagc taatcaggca ggtattcagt tgttcactcc
      541 tgcagacttg cttagcatag aaataggctg tctgcccagg aagatgaggt aatgtctagg
      601 tttaatgcca atctctgtaa ctggcaggac acatcgggta aatatttctg ctgcaggaga
      661 ccacattaat ttgattttgc taccagtttt cattattgtt attatttcca gcgctatgaa
      721 tatgcatgag tttacctgaa aaggctggtg atggagaggg cacagggctc caggtgaggc
      781 agtggggctg cttcccccct cttcatactc ctccctgcct ccgcttcgtc ctttcatctt
      841 ctttactgaa gggccaggca tttctctgct cacttatctt ctctactcca tctacacaac
      901 attaggtctc tttttccatt cacagcacat agtttttctc tccttattaa accacaaacc
      961 ccacttccca tccagtggtg caacactggt catccataag tgcttcccac acaggcactg
     1021 cttcacctgc acagggcca
//
LOCUS       KCLA01001858             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30178upu ultra-conserved element locus uce-1770,
            sequence.
ACCESSION   KCLA01001858
VERSION     KCLA01001858.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30178upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-1770"
BASE COUNT          171 a          107 c           81 g          178 t
ORIGIN      
        1 tcactatact ggaaaaatac tgtaatacaa tattagtttc tgggttttgg aacattaaga
       61 aaggaaaagt aaataagatc ttacctaaag aagtttaact gaagcttaga actattttgc
      121 tctacaccct cagccttcgt tggcatcctt ataactactg cagttataac tttgcagaaa
      181 tacagcgcag ctttttaaga ctggctgaac ttagtggcgt tttcaagagt tctcttgtcc
      241 tagacctgtg tccctggaag agtacctcgc tggggttatt tcctttcctt gccattgaag
      301 aagcagcatc taaaagatct aaaaaggtgt ttcctcttgc acagatatcc cttaagttaa
      361 ctagatactt taaacctgat catttacaga caacatactt tttctgacca gcatttaatt
      421 ttacacgtac aacaacagct ttgttattgg tgggacctta tactacccac tccttgcctt
      481 attttacaat ataaaaaaaa aaatctaaaa ttacacaata tttcctttag aattatt
//
LOCUS       KCLA01001859             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30194upu ultra-conserved element locus uce-4434,
            sequence.
ACCESSION   KCLA01001859
VERSION     KCLA01001859.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30194upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-4434"
BASE COUNT          225 a          119 c          143 g          220 t
ORIGIN      
        1 ctccagagac agccagcggt gtacgagcag atgtttggac agaggaagcg gtccaaatga
       61 aaacagtaca ggaacatttg agagtcttct ttctaaattt attcaggtat taaacaaaca
      121 gaaactacag catgcagcag agacttttct ttcttgtaca acaaaactat ggacttggtt
      181 gtaattgcag catttccagc aacatcaggc agacttgtcg atgttatcca gttttgcaca
      241 gtcactagag tgtcgcatca tgaattatta aatcagtgct tcgtggtaat acataatttc
      301 ttatcaatta ttcatgctaa tgtgtgtgta gtttacttaa ttgtgttatt gacgatcaaa
      361 agtaatttcc tgaaaatcct caaggacaga aaatttaatc agcgtaacta cttttcagat
      421 gcaatgctgt taagtattct taatttgctc aacaattcac ttatttatgt acctttctgg
      481 aggaaatacg agtttaatca aacaattaga ttgaagagtt agtgtacaga agggctgaag
      541 ttcaactgaa tgcgaggtaa ttatgttgaa atgaagttgg gctggcctct ttggaatgga
      601 agtggtgttt ctcttttttt tgagaagaga gaagagattt gtgatttaga agatcactaa
      661 ggaaacagtg attctctcgt ctccaaccac tccccacaaa aaagcac
//
LOCUS       KCLA01001860             498 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30209upu ultra-conserved element locus uce-1625,
            sequence.
ACCESSION   KCLA01001860
VERSION     KCLA01001860.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 498)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..498
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30209upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>498
                     /note="ultra-conserved element locus uce-1625"
BASE COUNT          128 a          125 c           99 g          146 t
ORIGIN      
        1 ccacacccct cccacctgca aaccccttcc ctccgctcac ccgttcccac ccctttccat
       61 aggagtgaga tgctgacttt gcaagctatt cgctttatga atatgaccct caaagggaag
      121 aaaccctctc acaagcccag aactatgtta tcatcgttat taaggagctt aaaaaggagc
      181 tgggaagagg agacaccggt ggaattgcag cctgattgtg attgatgtgt tcctattagc
      241 tcctcactgt tatctctctg gatggcaaga acagccagtg gcttgtaaca caacagatta
      301 cctgagtttt cagccctaga cggatgttta aataaaatat agtccctttt agcgagaagc
      361 tcattttctt tccgaggctc ccagactatt tcatgtcagc tgtgattcgc tgtgactctc
      421 ctcagtaaac atgtcttatc attaataatt ctttacaagc acaatttcat ggagtctttt
      481 tgtatgtgtg catggggg
//
LOCUS       KCLA01001861             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30224upu ultra-conserved element locus uce-833,
            sequence.
ACCESSION   KCLA01001861
VERSION     KCLA01001861.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30224upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-833"
BASE COUNT          206 a           97 c          126 g          182 t
ORIGIN      
        1 atacccatta tacaaaggtt gcagctaaat aaatattatt ttagtttaat tggattaaaa
       61 attagaaatg caaattctgg tgcaccatgt ctctgagtcc ttgtctccct ttttatggta
      121 atacccttct aatagtttaa gcctatgaag aaaaaacact gaagatttta actagcagct
      181 ttgcaggggg gcagaaagga gcaaagaaga tttagtggtg aaaagagcaa ataaataggt
      241 gctccaagat taaaaagagg gtagaagtgc atgctgagct gttgaaagac ctctctgtgt
      301 ttaaaggaaa atattgtttg gttctttcac cagtgcatga tcaaaataag aggtacaaat
      361 tagttcatgg ctgctgaagc tacaaaacat catgcagaga gctgtctttg ggaacgtttt
      421 aatgaggaga agaggtcatc agactgtgac attgcttttc agaattcttc aagaacaaca
      481 cagacttcct gttccaaatg tggtaaagaa taaaacaacc ttagtagtaa tcgtacaact
      541 tttgaaccgt gttccttgga aatactgtac tgtgctcatt ttgtagcttt agttagctat
      601 ctcaaaggaa c
//
LOCUS       KCLA01001862             519 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30240upu ultra-conserved element locus uce-1267,
            sequence.
ACCESSION   KCLA01001862
VERSION     KCLA01001862.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 519)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..519
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30240upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>519
                     /note="ultra-conserved element locus uce-1267"
BASE COUNT          172 a          102 c           78 g          167 t
ORIGIN      
        1 ggacttcagc cgctgtgata accttgtgca gaaccgctgt atctacatat tttaaatgtg
       61 taatttatca gttgaaacgt acccttcaat acatgtgcca taaaagaaaa gagcaagggc
      121 aattatgtaa tagtatagtg tttgtctgac atgctttaaa tccccatatt gttattcctt
      181 gctgaataac aaatacaaaa tccctgttag caatgttttc cgttttacca gttttatatt
      241 agctgcctcc ttaaaaattg ctaatctaga tactacatta gtaggatgtc agtcaaactg
      301 caatccacag tgaagccttc ttcatatacc aatttaaatc attcatggtc ctttctttgg
      361 cattattcaa aagatcataa taattttctt gtgcccacag cacaaaaaaa tcaattattt
      421 ccccacaaag acttgaaagt acttagcgag tgctgtaaga aaagctgagg gttatatcaa
      481 attgaaattg cactcattac acacaacaca attagttgc
//
LOCUS       KCLA01001863             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30256upu ultra-conserved element locus uce-1054,
            sequence.
ACCESSION   KCLA01001863
VERSION     KCLA01001863.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30256upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-1054"
BASE COUNT          291 a          217 c          207 g          265 t
ORIGIN      
        1 tgtaacacaa gtggtgtcat caaggcaaaa ataaatcttt gttgggccaa caagacacct
       61 atatccatgc ttcctgtctg tgtgaaaggc cacaaaacag agccccgagt tccccatggg
      121 tgggaagcgt ttgttatggg tgctagttac ctaaaaaggt caccgtaact ggtagctaaa
      181 ccaccttcca catccatctt ctagaggttg gaggtggaat ttgcatttcc gttttgttcc
      241 gagagcaaag ctatgcactg ttgtcaagaa cactacttac ctgaacctct gtcttcaatc
      301 aactgaagta atttggggtt gatggcttga ttagcctcgc gaagcacaga gatgaggtca
      361 tttacttgct taatattgtt aggagtaaag aatgtgtatg ctgtgcctgt tttggtactg
      421 cgggcagttc gtccaattcg gtggatatag tcctctgagg agttagggta gtcataattg
      481 atgacaaatt tcacatcttc cacatctgta aagtgttgca gtgtggcaaa aggcaaggta
      541 cgaagttttg cacaccacaa cagccaaatc gaagataaac attagacaat tgtactttaa
      601 aggaaataat ggctgcaaag aacagtgtta gaataatcca tttctgcatg agtattgtgg
      661 aagagaaagt tatgcacact ccgtctgttc ccgtctcatc acccaccctg tgatccaaaa
      721 ccttaccata aaggagtatg catttgcttg tcattcccaa ctcaagagtc ccctttacaa
      781 atcatcaagt gacatctgaa tgcttcttgc agtagggcca ctaaagctca cagcagcctc
      841 ttcatgtgct catttgagga ccttagagta aaaacataca aggtccttca catacacact
      901 cattagaagc tcaaaaaaaa ggggccacac tgctcgtctt gccaagacct ttgaaccgca
      961 gctgcaagaa aaacatacct
//
LOCUS       KCLA01001864             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30272upu ultra-conserved element locus uce-5416,
            sequence.
ACCESSION   KCLA01001864
VERSION     KCLA01001864.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-5416"
BASE COUNT          229 a          146 c          152 g          250 t
ORIGIN      
        1 tgctgcccct tcctccaacg cacgcagaat tcatgctgca agagaataag acgattccag
       61 tatatcaaca ttttattcac tctttaaaac atgaatattt aaacagaaga catttttccc
      121 catgcagaag cctaaataga agctcttaac cgaaatagta aaagctgtta tttttttccc
      181 ccaagaggtt ttagactgta tagagatagt tacacacaca ggcatctcaa atgagagggc
      241 accatacatc catgtaattg gttgcttttt ctttttcccc ggcagtctgt acaaaacgtg
      301 aaaatgtgcc tgcttctgac tagccattaa aggcagtggt tgcaccatac tgtgatttgg
      361 ggagctgaag aaaatagcca gaactgactg atatctgata aacagtaaca ggagtcagtt
      421 tattgcacca atcgttaaat aatggtgctg attataaggc tgctaactgc agatgctgta
      481 attgtctgtc ataaatctta gtcatttgtg acaggagcac aatgaaagag agcatctgct
      541 tgagggcaaa tgacttctga taaatatcag ctctgctaaa atgtacttgg atgtgtctca
      601 atattttgga gagccattca tgttgcttcc acaaatgtga agttattatt ggtttgtatt
      661 gattttgcca ccttggtttg ttgttttttt tttcttttta aagagacaga gtcagagagt
      721 gactcaaggt tgagttgaat tgaatctcag ctctttatct gatctactca ttcctct
//
LOCUS       KCLA01001865             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30286upu ultra-conserved element locus uce-3854,
            sequence.
ACCESSION   KCLA01001865
VERSION     KCLA01001865.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30286upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-3854"
BASE COUNT          283 a          138 c          167 g          259 t
ORIGIN      
        1 gttctcatct ctcaacctga tgccacaagg taaaattctg gcagactctc tctaaaatcc
       61 attagccctg gacattgaag gcagagtact tcatgcctat caaagatcct ttagttgtat
      121 tccaggctga ctgcaaggca aggaacaaaa tattgaatta gcattggagc atagattgtt
      181 ataggaatga aatacgaagt aaaatatgtg acagaattaa atccatcagt tctaataaag
      241 gaaacggaag aaagcaaaga aatattggac tcttaaatcc cattaaccag gccagagaga
      301 gaatgtgtta aaagggagct gcactgtatc tttttttatt gtttgatgaa ataatctttt
      361 tcacccttta agtggtatgt ttaaaaatcc tggtatttct gaaacaaaga gactacgcag
      421 ccactgagct agctggtttt tataccttcc ttttctgagt attgtccttc agtacaatac
      481 agagccattt ctttgttctc acaagctagc agttaaattg tatgtaaatg tatgcaaatt
      541 agatgctgtc taataaagag agtcattaga tggaagaaat atttagttta gggggaaaaa
      601 gaaagaaaga aaagaaagca ggtgtatttt gcagtagaaa aatgtaagat tgcaaaaggc
      661 ccgtgaagtt tgggtgaggg cttttttaaa aaccattaaa ataccctcta aaagacttgc
      721 ttgttccttt tccctgcaca ttttataatg tgtatgtatg gacactgctg tgatctttgc
      781 ttagaactca cactggctgt gctgtatgta catacttgaa cagacagatg aatattgttc
      841 tcataaa
//
LOCUS       KCLA01001866             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30302upu ultra-conserved element locus uce-6844,
            sequence.
ACCESSION   KCLA01001866
VERSION     KCLA01001866.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30302upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-6844"
BASE COUNT          234 a          141 c          192 g          199 t
ORIGIN      
        1 agatcgctct ttgcagcttc cccgcgagcc ctgtaaacaa ttaaaaccca attccctttc
       61 ctggagtccc atcgttctgc aactgacaac cgagttaaaa aggctgccaa aggaaagcag
      121 gagttggagg aagttaactg gcgttgatgt gtgcgcgccg ctgatagcaa gttgtgcccg
      181 tgacatcctg ccatcgcctc tcagaaaaga gagagagtgg agtggagtga aagactaaga
      241 ggatgttcat ttaattggaa agcctactga gatctgaggc agctgaggca gaggatgcac
      301 ccgttctgtg cacaatggca ctggctgaag gttgtgtaga aggtggcctt attaaagtga
      361 caaggcaatt tagttctttt gtgcaaaatg attctactcc attgatttac aaaggaaagg
      421 atataatttt gctggtgttg gcaaaaagct caaatgtcag gcttttcaaa ttgccatact
      481 cgccttgttc tggatgaata atgaataagt caccttttgt ctacggttaa atattcgtga
      541 ataaatacaa agagaagaaa agccataaat gattgcctga tttatattta aaataaagat
      601 caacattgtg ataaatggtt gaaaacgctt agtgtgaagt aataggactg tgctgataat
      661 tacgttatca attaaggggc agcccaggtg tggagcctta gagatcggct gccggagaaa
      721 cccctggggt ggaacagaat catgagggac ctcgaaagat catcta
//
LOCUS       KCLA01001867             655 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30318upu ultra-conserved element locus uce-2504,
            sequence.
ACCESSION   KCLA01001867
VERSION     KCLA01001867.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 655)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..655
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30318upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>655
                     /note="ultra-conserved element locus uce-2504"
BASE COUNT          241 a          127 c          104 g          183 t
ORIGIN      
        1 ttacgagtta tggatgcaca taacacacaa tgatgaggac aaagtatttc tctgcaagat
       61 acctcccccc acacattaac ccaaaactta tgcagcattt gaaacctatg accgtgttaa
      121 gaagaaaaat aatcactatc cgggcagact ctgcagctgc ccctttgact tatcaatttc
      181 agtaagcaca atttcaatca agtctagata aaatatacta atcctaaata gaccaagttt
      241 gtcacctacc acttcctata agctgcttac tatcctgaaa gagagagaga gaagaaatgc
      301 taaattaaat gccaaacagt agcagacagt gcttgtttgg ctgattaact tgtagacaag
      361 cattacaaat aaatctgagc atggtctgca gcaaattaaa ttccagtgct tttaagaaca
      421 aagaattcct tcggaaagag gattagcaac tttacaccca ggaatgccag tttaatttaa
      481 ttgttcccca atccgatatt taatatgcaa atataatttt gatatttaac agcaaactgg
      541 aaaaagtgag gaaacaattt caatatacaa agtgaccatc catcttccga actgtaattt
      601 gacaaaataa aactcgtcga gggttatttt taatattggg attgaaatct attaa
//
LOCUS       KCLA01001868             663 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30334upu ultra-conserved element locus uce-4077,
            sequence.
ACCESSION   KCLA01001868
VERSION     KCLA01001868.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 663)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..663
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30334upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>663
                     /note="ultra-conserved element locus uce-4077"
BASE COUNT          134 a          204 c          193 g          132 t
ORIGIN      
        1 gccggggcaa ggtgacgacg gagcttcgct gccccgcagc cctcccaggg tcgtgccctg
       61 tggctttggc tgaccagacc gaggcgcctc ctcttcgctt cccatacagg tgtcgctggg
      121 cagctgccac cgcacgggcg gtggagaggc aggttaatcc tgctgcccaa ggtctcggga
      181 gctcattaga gaacggagcc ttcgcaaaca ctgctcaagt gtgagtgttt tgcaggggtt
      241 gccacagaaa cacggagagc ctctcatcca aaatagggtg tctagacaaa ctcctactgt
      301 ctgacctttc ccgtgcttcc caagccagcc cccctcgcca ggcaaaccgg tgactaagca
      361 gcagctctcc gctcgctgcc tcgtaaagtc ctgacaaggc tcaggtcacg gttataaatt
      421 tcagtctggc tacttcagca actccgggct tccttcggca gcgcagctcc cgtgtggatt
      481 ctgggctctg atgtgtgctc tgcatcatcg ggaagcaatt tgggggccgt caaaccccac
      541 agccgcagct ccgccgcgaa acagagagcg ctttcatccg gcaggatccc ggggtttaca
      601 cagagctgta aggctggaga gagtctgggg tgaagcgaaa tgagagacag gcagccacct
      661 cct
//
LOCUS       KCLA01001869             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30350upu ultra-conserved element locus uce-190,
            sequence.
ACCESSION   KCLA01001869
VERSION     KCLA01001869.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30350upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-190"
BASE COUNT          287 a          179 c          179 g          251 t
ORIGIN      
        1 ggctttgctc aacgcacatg gccacagcaa ggcccccagg tgaatacatg ttgtttccca
       61 gagaatgtgt aagggtagag gagagaaaca gatatacagt cactgccctc aaatttttga
      121 ttgcttctac gcatagaaac acaacacaag tctcaacgtg cttgcatata ggcacagaac
      181 ttgtcactga tcaaaaaagt ctgctaaatg gtataaatac aagctgtgag gggcatcttc
      241 tagcatttct agcatcttgt cccttggacc ggtagaagtc agtacatttt caccacttag
      301 aatgccctgc gttatttgca actgtcagtg aaagggaaat ctgtaattgt taagagggaa
      361 agcacctgtg caaattcttc ccagtgcaaa gtgaacagtc aatcactttt ataaggacag
      421 gaacaactga aactatccat tcgtatactt tcctttagtc aacaatatta cctttagtaa
      481 tctggggaat gtgtatccat aaattacaga aagtgttatt gcattgctga ataaacagca
      541 acatttccat cagcagcagt ggcagcccca caaaggtata agaaacagat tcaatcattt
      601 tcttgtcaag ctttgcaatg actgcagagt ttactgctgg agataatgtt gctttcctca
      661 gcactgtgtg ccaaactgta aactgcttat taaaacaaac cctctttttc tgagcagcat
      721 gagttggata atcacttatt gcactcaaga aaaaacaggt ttgatgccca gaggtggtta
      781 gcaatcaagc atttgcatta acatttggtt tgtaaaaact ggttaaaaaa aatcagtgaa
      841 ctaaaaagga attatgagag ccagtgcccc aggttgagca ttttcgctgt taatat
//
LOCUS       KCLA01001870             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30364upu ultra-conserved element locus uce-7003,
            sequence.
ACCESSION   KCLA01001870
VERSION     KCLA01001870.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30364upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-7003"
BASE COUNT          255 a          191 c          199 g          251 t
ORIGIN      
        1 tttttcccca ggaagaaata tatggaagtg gaatactgtt gaggatgtgc aattttgctc
       61 ttgagaaaaa acctcaggat tacccctggt cttatccaca gatcccaggc actttgctaa
      121 ttcatacttt gatccctagg aaacagagct tgccaataac atttctttta aagcaggata
      181 caaaacgatc tccaggtcag gtgcatctga agaggtgcat ttctctcgaa agcagcataa
      241 taagcactcg ggagaaagca ttggactttg cagccaagag gtcggtgtcc gttaaaggag
      301 gctttgctat cttaattttg ctttcctcag tgaagggact tgcagcaggt ttaatgagct
      361 acgaaacgtg atagctcaca gaattctccc attcatgtgc aggtctgtgt ggtttcctcc
      421 aggccccggt ttttgggagc tgattcaatt actctactct tcaggtttgc gtttgtgaaa
      481 aacagtgatg gagtacagtg tcacaggtca cttctgatta aacatcccat ccttcttgca
      541 gacatttagc tcagaatcca tttgtgtgcg actgccattt gaagtggctg gctgattacc
      601 tgcaggataa tccgatagaa accagcggcg ctcgatgcag caatccgcgt cgccttgcca
      661 acaaacgaat cagccagatc aagagcaaga agttccgctg ctcaggtaat tcatttatcc
      721 aggctgtact gcactttcaa ttcagaaata agcaggtcca gagagcctgc taatcgaatc
      781 tgcaggacag tgtttgctat aatggatatt atggagcatc tttggaaatt aaatttggaa
      841 aattcagtta gttctccaga aagcaaatta ccttatggat ttaaaaaagg accaaa
//
LOCUS       KCLA01001871             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30380upu ultra-conserved element locus uce-3466,
            sequence.
ACCESSION   KCLA01001871
VERSION     KCLA01001871.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30380upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-3466"
BASE COUNT          201 a          105 c          107 g          201 t
ORIGIN      
        1 gataaatgag ccctgatttt attggcctgt ctcataaaaa tgtttcagtg ttaatgaaca
       61 cgagatcaaa tacttgacaa aaagtggcaa gggtatatat gccaaagtga aagagagaag
      121 agaataatga gtttgaaaag aataaaacac actgtttagt ggaaaggaat gttacaaagg
      181 tctctgtgac tcttctattc ctgaggtttc tgccagttcc ctttattact atttcaagta
      241 accaggtaca tatggcatgt ttgtaagtaa agcagtcaat gaagttagtt acacctctgc
      301 atttattacc ttacccctga gtattattaa cttttacatt ccccataaaa tataatttat
      361 cacttaaata atttgctttg tgtcagggtt cagtgtgctc cagtgctttc ctgctcgtta
      421 aatgagatat ttttacttaa tgagcccaga atgtcctttg catttaacat tagaattgat
      481 ttcaaacact ccatttttct atcatatttg tatgtaattt cagaatgtgg acttcatccc
      541 acaaccttac actcaggaaa aaagggctac aaagaataat gatccatgaa ttctagaggg
      601 acacataagt atgg
//
LOCUS       KCLA01001872             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30396upu ultra-conserved element locus uce-7236,
            sequence.
ACCESSION   KCLA01001872
VERSION     KCLA01001872.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30396upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-7236"
BASE COUNT          305 a          178 c          144 g          265 t
ORIGIN      
        1 tgcaaggtaa gtttagagtg acttcttgaa catatttgaa cagaggggat tttcttaaca
       61 gccagttgaa aaaagaggat gtaaaaaata cttaagttaa tactaataca agtccaagtg
      121 ctagacgagg tgacccaagt tagtacttga tacaaattca aaaggaagaa gagaaggtcc
      181 ctgtactgat aaagccagta ctgtcacact tcaagtctat ctcccaacac acacagaaat
      241 gcagcaagca cttcagatac atcagtctct ccaagatttt tttccagtac atttacctct
      301 gccaagctct ccccttcccc caacatacaa aaatccatta ctaaagggtc taatctcagc
      361 tatcagcaca gagtgccttt tatggagcca ttaaaccatt tctcttgttt acagtgcctg
      421 aagaaagatg tgaattatgt ctgtgacaaa acaggcgata acatttctaa actgctatca
      481 aaatgcaaac tgaagtacac ttaaggacag ggaccctaat tcctggtttt gcaattttcc
      541 tcactcactg taacttaaca gcactcactt gatgaatcaa attatttatg ctgcgtgtac
      601 aacagatagg cattttaggg cttttatcta ctttcactaa atggtttctt taataggtca
      661 ttaagaaggg taaattgcta actacttctc aggtgatagc agtgacctag gtttatcagt
      721 agacattttt aaaaaattca aacacaaatt catgatttca tgaggtctga aatgcttcat
      781 ttctacaact taacaattta aaccatacat ctattacagg tatttacata tctgacagaa
      841 tgagatacaa aacaaaatac tttctatatg atcttttaca cggagttaca gg
//
LOCUS       KCLA01001873             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30411upu ultra-conserved element locus uce-589,
            sequence.
ACCESSION   KCLA01001873
VERSION     KCLA01001873.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30411upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-589"
BASE COUNT          138 a           91 c           78 g          143 t
ORIGIN      
        1 atccccctgg ggacacacgg cccctatttg tgattaagaa aaaagcccca taatagacta
       61 atagctaaag ttctctctct tttactttca ggcaattagc ttgatgaaat ggcctctttt
      121 tgtgtaccct ggaagtgtaa accgatatca taatgaagta tatgatgttt attctattat
      181 tttcaccttg ccatgtatgc aggaatgcat aaataatggc tgctttgtct agtacattta
      241 ctgattcaga agtaaactat gtcttaaaga tgcagtgtat gatcctgcag ccttacgtta
      301 acctgggcac tacgactcat ccctataaaa actaatgttc tgcatcaaga agttggagac
      361 catttgtagt caggtgatta ctgcttacga gacaccttcc tttgtaaaga accttaatta
      421 gaaaatcctc ctaataacct tgtgaaaaaa
//
LOCUS       KCLA01001874             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30427upu ultra-conserved element locus uce-1300,
            sequence.
ACCESSION   KCLA01001874
VERSION     KCLA01001874.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30427upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-1300"
BASE COUNT          201 a          123 c          144 g          200 t
ORIGIN      
        1 agggagatgc ttcatcattt ttgtgggtct gcctttgggg ttcctgtgct ggtggcattg
       61 tggacagcta ggcagagatc agaagcaaac ctgtgaaaga actaccttca gcattttaag
      121 ataggtgagc ttacatacag ggtctctgaa gctgctgaat aagaactcaa gattcttctg
      181 agatgacaaa tgcagagagg ccagctcgtc tgtgtcgctg tgcaaatgtc ttgcaagttt
      241 tgaagccttg cacttcagtt ttgttagcct gttggaagaa atctcattta actggcattt
      301 ttacatctac attaattctt ttaaaacact gaagtgagtg ttctacagct atgtaaagaa
      361 acgcattatc aaagcattaa gatatgatta aactgacatt ttcttaagaa aacgaaagga
      421 gcaggaaaaa gccattctaa aaggactgag tgctacatac tccagatatt atcttcagtg
      481 cttactcagg gatctttaaa gaagcttatt accaagtacc ctaagaagac aagtgtggat
      541 gtgtacagat cagaggaatg caagttaatg cacctgccag attttactat cgtacaaagc
      601 gtgtcaatca gcactcagac cttgcgttta aaaatgtgtt ccctcagatt tttttcagtg
      661 ctgtatct
//
LOCUS       KCLA01001875             824 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30443upu ultra-conserved element locus uce-7540,
            sequence.
ACCESSION   KCLA01001875
VERSION     KCLA01001875.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 824)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..824
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30443upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>824
                     /note="ultra-conserved element locus uce-7540"
BASE COUNT          206 a          196 c          219 g          203 t
ORIGIN      
        1 tggtggcaga gcaagtacct aagtgaatgt tttaaataac taactgtaag ggaaaaatac
       61 tttccctact agtattcaga gggtcatttt taaaaagtct ctcctttcac tccagtaagg
      121 atttcccagc agttaatttc agtagcatct ggcacagcct ttcgacttgc gcctgttgca
      181 gacttcgcca ggagcgggat gagtgtggga gatttccctt cccatctcag catccccctc
      241 tgtaaatttt ccccctcacc atccctttcc aaatgtctga ttccccggca ggtctcgccg
      301 gcagcgcagc agatgcagcc ctcgcagacg atacagcagc cgcagccaac tggaggccgc
      361 cggaggaggg tggtggatga agacccggat gagaggaggc ggaaatttct ggaaaggaac
      421 cgagccgccg ccacgcgctg cagacagaag aggaaggtct gggtgatgtc actggaaaag
      481 aaagcagaag agctcaccca gacaaacatg cagcttcagg tatgagccac tgtctgtgcc
      541 cccgaggaca cagagggggc tttgtgcttg gaggggctgg cactctctgc ctctgggctg
      601 cccccgcaca gccagctctg agtgggagcg ggttgtaatc aaagtcaatt aatccatatg
      661 tgtgcttcaa ttagagaaat aattacattt tagaggggta agccaggaaa aagctccctt
      721 gggattcaga agcctttgct agatggaatt ctatttattt tatttgattg tcactgcttt
      781 ttgtggggat tttttttgga agtgccatga actcagctgt gaaa
//
LOCUS       KCLA01001876             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30459upu ultra-conserved element locus uce-7753,
            sequence.
ACCESSION   KCLA01001876
VERSION     KCLA01001876.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30459upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-7753"
BASE COUNT          248 a          179 c          174 g          284 t
ORIGIN      
        1 cttaagttta gatgtgggag catctctctg tatttaaagg cacagccggc acaaagggca
       61 ataatgtatg ttgtgacact gctagggaaa aacggaatgg atttgcactc aaccgctgat
      121 gcttcctaac gattcattag cagctgacaa ttattgtggc ctgatgtgct tgttgtgctc
      181 acagaaatca cctcggtagc gctgagctgt ctggaatcat actgtgaagt tcaatgttga
      241 tatgaaatta gatcaatcta tggctagaaa attatgggac caagatggag gcttattgca
      301 taattagtta aacaatattt tgtctgtggc tctcatcaag ctgtaaggca tatctgttgt
      361 aattatattt tacatcagta atgtgacaca ttaatgaaat gtgtctctac agcagcctta
      421 ggatccattt cattaatgca aaccactttt gttgtatgct ttacatttgg aaacagattt
      481 aagtattaag tggctaatgt ctgcagccag ggaatccttt ccgaatttgt aagactgacc
      541 agaacagact gcattacact ctccaaatgg tgcatttttg catttgaatg tctgaattat
      601 cctggtttct tagagacgac cacaacacca acatcttaaa tcctcaaaat attgtccgct
      661 tcattgaatg ctcatgatct aagcatatgt gtaattattc tgtaattctt gccaaaatgt
      721 gattccttgg aaatgcatac tagattcccc ctattgtagc tgcaatgact atttctttgt
      781 gcctgcttct ttaaatacgg tcacaaggaa gtctgtgtgc cttggtgcac cgcatgtgta
      841 atgatgatcc tcccacccct ctcctcccag tacgtccatc agaag
//
LOCUS       KCLA01001877             959 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30475upu ultra-conserved element locus uce-3927,
            sequence.
ACCESSION   KCLA01001877
VERSION     KCLA01001877.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30475upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>959
                     /note="ultra-conserved element locus uce-3927"
BASE COUNT          343 a          164 c          168 g          284 t
ORIGIN      
        1 accctttcaa tcacaaagtt tgaggctaat caataatggt gagtgtgtta ttgtactttt
       61 cggattctat ttgtagatta aaatggcatt acaaaacaaa taaaaaaacc tcaaaaccag
      121 aggtaattga ttacattcac attgtttatg tcaaataaca gaagatgaaa atttttacta
      181 caccagtgca cctttgtgga tctcagcttc agtgaactct ttccattttt aatcagctcg
      241 gagaaatgat tcttgtattg ggaaataaag aaaagaaaac aaaattttca gtcctcaatt
      301 ccagcagata ttgtggtttg agccaccgca tgccacagga ataaatggag aaagcagaaa
      361 aagtcttgct ttgtaacatt aaatgtgatt gaagactgta cagttcctct tacgcttttc
      421 gacgttttgt cactttacct ggagaaatat actctgctta ttcgggattg ctgctgatgt
      481 ccagcacttg tcaaaactgc tatctgtcaa gcacttcaca aagtgttgca aaatgacaga
      541 tcaggatgtc tgaatagatg gagccccagg aaaaacagaa cagatagaaa attcatgact
      601 ctaaactaca tcaaagcgac ttctgtcaac atcatgtcaa aagaaggaaa aaaagaactg
      661 ttcattttag agagtttttt tcattatata aacacttttt tcacgtatga gctaagtgta
      721 aggaaaaatt aactcggtgt acagtatgat cattcaaatg tgccaaaaat actctttaaa
      781 taatccagga ataagaaaag ttctaacagt agatactgtc tggcagttaa aaccaatgac
      841 atccaaaaga aatgcatcaa gaatctatcg gcttaaaata ggacaaacca tctggctcta
      901 aagaaataaa agtgtttgtt gggtttgcag aatcctacaa ctggattaat tttgcattt
//
LOCUS       KCLA01001878            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30491upu ultra-conserved element locus uce-3687,
            sequence.
ACCESSION   KCLA01001878
VERSION     KCLA01001878.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30491upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-3687"
BASE COUNT          321 a          192 c          232 g          328 t
ORIGIN      
        1 gaaatatgca tctgggagca cagattatta gtagcttctc aagaatgcaa cttttcaggt
       61 gtaggaattg gcatttggga gctgtgttct ttttggacaa aagcgtgttt catcaagctt
      121 tcagcttttg aaaaatctgt gatctaagcc ctctagattg catggtttcc catgcgatgg
      181 tgattctaca gcctatttga ggctgctatg gaaaacttga aggggaaaaa tataaataaa
      241 atatgcccaa gcacacaagt caatgatctg tgtgttaagc ttattggcac attcaagacg
      301 attttattgc atgacctact ggttaaaaac atcaaaaata taagtcaagt catttgagga
      361 actgctgctt agtgagttag aatgaatgaa gtctttattg agtacatgct tccagattca
      421 tcactggttc tgttctagtt atgccctatc ctagtcttaa ctgccccagg cagtcttttt
      481 gaggccactt gacctgccag tcatatttca gaaactactg atatggtact tgctgattta
      541 gtttagattc caaacgggct agctgctgga ttacagacta atgacccatc agatgctaaa
      601 ggcaaaggct taaagtgcac cagtgaatta agcctcagca ttgtctgaag ggaagaattt
      661 attatgtcat taaacctgat tcaataagtt tcacttcttc agatgcacta agcaagaagt
      721 aaggaattat tatgacagag ataccatttt gattctcttc aggtaaagca ctgatattca
      781 agcgtggtat catgagatgc cattttgttg gattttgact atgccagtag aaacaaaagg
      841 ttgagaaaac cctgtattgc tggttaacca accatggact ccttgaactg ggtttgcttc
      901 aatatatgct tcagttggta attggggaag tgaggcttgc ctgtctcgat gaggcccttg
      961 gtgaggtttt gggacctttc catcaaataa caaagccttg gcagtgtaaa gatactagta
     1021 gcaagtagta gatggcacta gaatctaatg ctgaacgtaa tacaagcaca taa
//
LOCUS       KCLA01001879             541 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30506upu ultra-conserved element locus uce-5992,
            sequence.
ACCESSION   KCLA01001879
VERSION     KCLA01001879.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 541)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..541
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30506upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>541
                     /note="ultra-conserved element locus uce-5992"
BASE COUNT          162 a          106 c           98 g          175 t
ORIGIN      
        1 agtcattgat gaagtctctt tttacatttt ctctgaaaaa aaaattagaa aagggacatg
       61 atataaaact gaaacagaac aaagcacgtt gtacaaagga ttatttcaag taattcccct
      121 tgaaactgta acaaaggaat atttcctggt gattaaatgg actgtcaggt aatcagaaaa
      181 gttgggttag gttttcctca agaagaaaag cagcattttg gatggatttt gtttttggtg
      241 ctttctgaca ctttacagct tattccctca tgtcacacca gtttaattca ttattcataa
      301 acatgctgaa tgccagagtg atctgagaaa ctatggtgct attacacact caaccactat
      361 gccttttctt cccatcccac ccagccctct tgctattctt ccactgggaa ctattgccca
      421 tcctattgcc ttgctttatg ctgatggtac tctttgtatt ttacactctg tgcaagactc
      481 tgagatggtc ttgaaggaaa aatcatgatc aagaggactg aatttgtccc tggaattgaa
      541 g
//
LOCUS       KCLA01001880             539 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30521upu ultra-conserved element locus uce-1047,
            sequence.
ACCESSION   KCLA01001880
VERSION     KCLA01001880.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 539)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..539
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30521upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>539
                     /note="ultra-conserved element locus uce-1047"
BASE COUNT          155 a          115 c           97 g          172 t
ORIGIN      
        1 tttttttttc ttttgccatc tactgtctca ctacttccta gttaaacctt gtctcaagtt
       61 atcaacactc tagagagata agcttcttct cacttacaac ctgtcactaa taatcgaact
      121 ttcaagactc catctcgaaa agagactact ggaggcacac aggtcacagg aattaactgc
      181 caccagtcct tgcaaaaaat taagctcatc aatctatagc ttctcatcat aattagaata
      241 acggctttga aaatttgggc tgatgttgac tcggtcttat gccacaatga ctgctgatta
      301 aaatcttggt gtgaaagtta atgataagtg ctggtggcgt tgtcatagta acaggaacaa
      361 acaattccct tgctgtgaca ttttcaatgt cctgcagaag aaaaactgtc ctctttagtg
      421 tggcactata tgaagcttat ttatggctac agggcttgct ggattgatga ctgtcgtaac
      481 acactgtcaa atcctttact gacacattca ttttttgagc ccctggtgtg gcagaaata
//
LOCUS       KCLA01001881             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30536upu ultra-conserved element locus uce-6496,
            sequence.
ACCESSION   KCLA01001881
VERSION     KCLA01001881.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30536upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-6496"
BASE COUNT          254 a          148 c          194 g          235 t
ORIGIN      
        1 caaattaaag agaaaaataa gagagtgcca gatctaacac acgcgctttg cagtataatg
       61 ggaaaatgaa gacattttca agcagcaagg gttgtgaagt cttgaaatgc ttagatcagg
      121 tggcactgtc tggtagaaaa gcaagctctg taatgatatt gattgcttcc aaggccatat
      181 tagagatgaa gacaggtccc tggagaaagg ttgttgtcac cttgaccttg tgtcagagct
      241 agaccactga cccttgacac ccaggacttc ggcacggcgt catgatatct ttcatgccta
      301 cagacaaagt cagcagggga cacatgtcga tgtggctctt gccaaatcag aattgactgg
      361 cctgtaggaa gctggagagc agcaggaaat gtgggttaaa gtatgtcaat aatgtttcac
      421 aggaacaatt tctcccaaga attgtagctg ttggaatgtt ttgacattta ttcggtagag
      481 aaatgtagca tgttttgtga agcacttcaa gagagctgct gctaactgct gcggtttatt
      541 gatcttcctg ttaaattgca tgggcacact tgggagatca ttgagattca ggcaacagga
      601 cagaaaggat cgcctgcgcc cgatggtcac taatggtaat tggtttcgat ccttgcactt
      661 gaagaagccg tgatttactt ggttcacaga tgaattgtag acactaaata ttttgaaaag
      721 aaaatacact gtgatttctt tttctcaggc cgtttacaaa ttattgcatt cacttctgaa
      781 tgcttcatat aaagtatata agtccatata taaaggtata taaaatactg a
//
LOCUS       KCLA01001882             225 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30550upu ultra-conserved element locus uce-2064,
            sequence.
ACCESSION   KCLA01001882
VERSION     KCLA01001882.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 225)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 225)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..225
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30550upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>225
                     /note="ultra-conserved element locus uce-2064"
BASE COUNT           67 a           36 c           46 g           76 t
ORIGIN      
        1 ctgatatcca ggtgttggag tgattctcaa ggatttcatc tagaccctgt tgaagccagt
       61 cactgctgca ctaattttgc aagggatcag gaccagcaac gtttatattc tagattttaa
      121 gacattgtac agaaattcat aagtgtaaaa atattgcaca ttgagaaata ccaataattt
      181 ttgcgtatgt ttatattgta ttgttctaaa tgacgggtgg cctgt
//
LOCUS       KCLA01001883             636 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30564upu ultra-conserved element locus uce-3516,
            sequence.
ACCESSION   KCLA01001883
VERSION     KCLA01001883.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 636)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..636
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30564upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>636
                     /note="ultra-conserved element locus uce-3516"
BASE COUNT          203 a          108 c          126 g          199 t
ORIGIN      
        1 aaaaaaggat aaaggacaaa aacccaaaac tcacagactt ccttgtcaca ttcagtgaag
       61 gttgcctatc acctttcagg cacatttgtc attacgtgta aaattggcac agttgtgggt
      121 caagatcact gaacatttca aaaacaatag catgaattca aattaattct ggattctgca
      181 cagagagggg tcttgccaga agcagtataa tctagaggtc tttggggcat gagtttaggt
      241 ttaggtttgg cactagaaag actagagaag tgacagtaaa agcaaacagt aacttgagaa
      301 cattttaata acagctgttc tgttttcttc ttgtaacact tttattttat ttgcgctttt
      361 gtagtctcat cttgatgaca tggctattat tttatagcag tttcaaacag ttaattaatg
      421 aaatgcacag atgtgacatg acacaatctt gcccaattat ctctggtgta cacttatatg
      481 gtacatagca ctgctacatt gtgagttgct ttagatggta aattggctct ggaagctgat
      541 attttcatag ccataacaat acaagatatg tctgatacac agcaatgaca atttgtgttg
      601 catggtctca tgaaattcac gaaaagcctt ggtgag
//
LOCUS       KCLA01001884            1054 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30580upu ultra-conserved element locus uce-6598,
            sequence.
ACCESSION   KCLA01001884
VERSION     KCLA01001884.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30580upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1054
                     /note="ultra-conserved element locus uce-6598"
BASE COUNT          293 a          254 c          218 g          289 t
ORIGIN      
        1 tgcaggtgtt tagatgcgtt tatatataca cacgaccctc actgtgtgcc caccttctct
       61 ccagcctctc gttcagagag aaggagcaaa aatcgtccaa ggcaagaacg tgtatttcca
      121 ggcgactttg tcagatgctc gtgtgtgcat cttataaata tttcatacca aatatttaac
      181 atcattcctt ccccaatcgg atcagctttg aaatgctcct caaagtgaat tctcccctaa
      241 caatggcttg acgcagaagc cttttttctc gcttaagaag aagaggctgc acgtggtctg
      301 ctaccatagc agcatgaaga gttcttattt aatggaaaat aaaagatact ttacattaat
      361 tcagtggggg aggaaaagct gggcacatgc gtaccttgcg cttcaaacat ggaggagcat
      421 cataccttga cctcccctct cctggtccca tggttattac ccagcctgca ttagaaccat
      481 aatgagaagt gacaagttta tgtaaatgat ccacgcaagg attttgctct tgtaaaacag
      541 agcagttact ctgggctttc taattatttc atgccttgtg gttctgtgat ggggcagaga
      601 tgactattac ttgaaaagta tattgtgatt gacaagtcac tgtccccctg gaactcatta
      661 aggcttgtgc tttgcaagag ggggtagaaa accctaccag gcacacacac gcacccccct
      721 caccccggtg tcagttgttc tttcagatca tttgttggga tttttgcact gatagagaat
      781 agcatgatct gaaagtatct ccaacaagta ccacctcccc gctacaaatc gaccaattat
      841 cctctgcttt cccattttta ttttaaaaat ctctaagatt agcagcaaca cacccgccaa
      901 acacactgga tttcagcacg ctggatggga aagccagttg tttcacagta cattattcaa
      961 cagggaacag agatgggctg ggacatggga caagggctac cataaacgct gtcaccgttt
     1021 ctgctgccaa gtgccttcca tacagacaga ggcc
//
LOCUS       KCLA01001885            1187 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30596upu ultra-conserved element locus uce-6906,
            sequence.
ACCESSION   KCLA01001885
VERSION     KCLA01001885.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1187)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1187)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1187
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30596upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1187
                     /note="ultra-conserved element locus uce-6906"
BASE COUNT          299 a          270 c          253 g          365 t
ORIGIN      
        1 gtcatttcct tcaagaaaca cgtagacctc ctgttttcct tcgtccagca ctgctgggtt
       61 ttgcaccgaa ctggacttgt gcgtgcacat cctgtggact ggagctgatc caagcccaag
      121 tctagagcaa ttctacctca gccttggctt ttccaatatg tttttataat ggcgcttaat
      181 tacgagcatg agaaataact aattatcaga gcatggagct ttccttcccc aggaaaaggg
      241 gccatcgtta ttttgcctgt tagatgtcgt aaccaatgca gctgctgtta ccagccaagg
      301 tgctcaacgt agaaaatatt agttccttct tctgcgtgtt ccgtacaaca atataagcat
      361 tgaccgttgt gtactctggt attattttcc tttcctgctt atagtccctt ctcatgtttc
      421 tccatcattt taggccccta atagggatag gatgaaccca ttgatgtcgg cacatggagg
      481 gctgctagta gcatgccttt ggttttagtc tcctagcagc agccattcat gttatgtggg
      541 ctttcttttt tgggcattgc ccacccctgg aactgacttc aggcattttt cactgcctgt
      601 tctgcatgaa tagccacagg cctcttgccg attgtccccc cttcttgaaa gccagcctca
      661 gccaaagggc ttttcaagtg tgatcccaga gtgccacaca ggctttcagg gtattgttgt
      721 cgagatgagg gccctgcact ggaaagtggg gtcagaagag aaagcacaat aaggggtgat
      781 ggaggcttca tgcagtcctc agatgctggc ctgtttatta atttacaaaa ctaatgtcac
      841 tgtctttaga gaagagattg agtgaaaaag atgccctttg aagagaagaa ctgcttttga
      901 tgcattacca aaacattgct ccccttatta aattgatttt atggaagcta gtacagctaa
      961 taaaagttca gaaacgccaa taaaatattg aaggtctgga ttcagtgttc cctttttccc
     1021 ctcatcagct caggcacaat tcatgttaat gggttttaca agttgtcctt gggcaaaaaa
     1081 aatgcttaaa tataatgggt acaaatatct gttcttcctt ctgcgtgtcc caagaattat
     1141 tagccaggac cgtacaatgg tgcaagtcct ttatcacagt tctcctt
//
LOCUS       KCLA01001886            1153 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30612upu ultra-conserved element locus uce-7642,
            sequence.
ACCESSION   KCLA01001886
VERSION     KCLA01001886.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1153)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1153
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30612upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1153
                     /note="ultra-conserved element locus uce-7642"
BASE COUNT          304 a          276 c          218 g          355 t
ORIGIN      
        1 ggacagtctc ccccgagtgc tgtgacaaca gaagcatgaa aggatgtttt ctgagaacat
       61 tagaggattc cttgaaaacg atacagtgtg aaaaccccac ctgacacact cctgacttct
      121 tcaggaaatt gcagttggct gcaggaaaaa aatggtgctt acttagttta ttttttatgt
      181 ggctcagttt tccacctgct ttttcatgac atacaggctt tggggagagg agtgaagagc
      241 tccctgaaag ccacctctgg cacgactatt acaagagaca atgaactcga acatgcctct
      301 ctccctcttt tcctccaaag atcgtgaact tgaaactcag ttgtacatgc atgaaagttc
      361 tataaacatt acttaaacag cagccaaaag acctttgcca gctctggcct acttctcccc
      421 ttgttggggc tcagcactcc cactcagttg actacttgtc ctactctttg ccctctctgc
      481 tctgctgcaa tcgtcctgga attttcctct atgcaactgc tgtccaaacc agctgcaccc
      541 actacatctt cagcagtgga ccgaggaggg tattaatcat atttttgagg aggacactct
      601 gctatttatc tccctgacac ctccagcgtt tgggagccca ctgctgcaca cagcccattg
      661 actagtaata ttacacatta ccgtgctcca ttgcctctcc ctgccctctt cattgagtgg
      721 ctgttcaaca gtggagttgt gtttgttcaa tcagacataa tttatacctt ttttgttcct
      781 tctagagagc tcttgctaat tttaagtcta agcgctgctt tcgccataga attctagctc
      841 caacatcatt ggaactgaag atggtcaaat agatccgatt ccagacttgt tcaaacttgt
      901 tggttttaaa tcaccaaatg tctgatttaa aaatgaagtg tcaaggggga tcatcccata
      961 cttgctttaa agatctgagt tttattgcac atctcagaat atatatacct tctatctctg
     1021 aagggaatac ctgcaacagc acgttgctct gtgatgccct ggctattgtc caacatgcaa
     1081 agtctgcaaa ggacaagaga ttaataattc agttaattta tagcaagtgt tttttgtttt
     1141 cattttttaa aag
//
LOCUS       KCLA01001887            1271 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30628upu ultra-conserved element locus uce-1933,
            sequence.
ACCESSION   KCLA01001887
VERSION     KCLA01001887.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1271)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1271)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1271
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30628upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1271
                     /note="ultra-conserved element locus uce-1933"
BASE COUNT          355 a          231 c          268 g          417 t
ORIGIN      
        1 gcctatggta gaactcctgt ttcaggcttt cctttgtaca tctttgcttc ctttcatcct
       61 gtaattgagt gtgaggaatt tggggtctgc tgctttctgt agaaattagt gctcagtggt
      121 gctgacagta acaataggaa aaacaaccag gtgccaagtt atgtataaag cttcaggatt
      181 ttgcccgatc tttttgatcc tgtagatgat gttaataatt acctcatgct gcagcttttt
      241 ccacgcataa ttgacagaat aggtagtgag tcctttagac cagtttggtt tgctcttttt
      301 gtattcacta ttagtcatat gaggtaacgt tgaatttata gttaatttcc ttttactcta
      361 acaaaactgt tcggcaggat aatttctgat tatattaacg aatgggcatg acagaaagaa
      421 aagaaagcag catgataaac gttgtgacct tccagtgaga aacagtatgg catgcataaa
      481 ggactgctgc attaaatgga ggagggggga gaaggaagtg ggtaattatt tgtagcagtg
      541 cttttactgt tgttggaatg agacagacta acagtggcag cagtcatttt gctgaatcaa
      601 agtccatgtt agtcgcatta tacactgcca caaaaggttg ttaaggctgg tattagcatg
      661 taccactgag gacattggaa ggactcgatc tgtcacacta aatcgccttc ttgccctcaa
      721 ccattgaagt ctccagctcc tctgacatgt tctttcatta atggcctggc cttgacaact
      781 gatcctaatt gcctctgaac cacacttcat gtattattgg tgtctgcctg ccctggttca
      841 tgtcaacaag ccgcagcatg cacagggtgt gcccggtgcc ttttgctgaa atgatgctca
      901 catagtcatt tacctctgag ggtttgggtc tcactgggaa tgaagtataa agctaaagat
      961 cttcctgtct cttcttagta atactttaat gtggatctgt gctatgtact tattaggcat
     1021 gtatgaagac tcagtaaagc atcaagccaa ttatgcaaga ttccattaaa gcatagactg
     1081 taaatgcaaa gtaaaacttg tctgcatttt acttactgtt tgtttattca ttctggaaag
     1141 cttattcaac tagaaagtgt ggattacact tcatttttca taaataaaac tttgttctca
     1201 tttaaagcaa tagtatgaaa gaaatactgt ctgtagtatt gacagagttt ctgtagattg
     1261 aaatgttctg a
//
LOCUS       KCLA01001888            1029 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30644upu ultra-conserved element locus uce-3196,
            sequence.
ACCESSION   KCLA01001888
VERSION     KCLA01001888.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30644upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1029
                     /note="ultra-conserved element locus uce-3196"
BASE COUNT          300 a          243 c          231 g          255 t
ORIGIN      
        1 gtatttgatt tttaagctga tggtgggtta tgaaaattat tgcaacttag agcaaagggg
       61 tggctctatg ctgctcagca gccttttctt ccccaccctc ctaagcagaa ttacccacaa
      121 ttgctgccta agccatggag cattttgcaa ctcacccgcc ttcccacccc ttaacatctc
      181 ctcttttccc cccaccccat cgacattgtc cccccagcac aaattgccag gcatctgcac
      241 aaaggacaag tagaagaata aggtgacagt tctttaaggg aagaataaaa atgcaaatta
      301 acaaacacca aatttgctgt aaacattaaa tacttcagac atgaaacctt ctgtgctaca
      361 ggagtgcttt cagcattatc tattcacagc agttcctctg ctcctgaggg tcataaacac
      421 tgagagatgg agccagcaaa aaagctctag ttgaaattca gctcacagca aaagcaattt
      481 ccgagtgtgc aaagtgctgt cagcaggcct gatgtttgtg tatgaaatat agacaatatg
      541 actggcccat cggcagtcac tgtcagcctg atggatggtg cctgagaaga agtaaagcgg
      601 ctgccgttag ggcccagtct atcagacgct tgatggagat tcgggggctt aatagaggta
      661 aaagtttctt ctaatcggac aaaatttcca gtggtgatca caaagaaaat aaaaggaata
      721 gcagtgtgat gtgagggcat gagtgaggct ttcccatctc agccacagta cagaaaagga
      781 aagcaatgca ttcccaatgc caaggaagat tggtatcttt gtccttggaa ctctcctgtt
      841 ccagtacaga cagggcagtc ctacggctca ctgtgtgcca agcatctcaa ggggtttccc
      901 acagcccaga ctgctcacaa aatgaaaaca tcgcctgtgc aattgctttg gtgctgcctg
      961 ttgctatggc atgggtgtga ctgggcatgg cagacacaca ctcacactgg tgcagaaaaa
     1021 cttattgaa
//
LOCUS       KCLA01001889             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30660upu ultra-conserved element locus uce-4975,
            sequence.
ACCESSION   KCLA01001889
VERSION     KCLA01001889.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30660upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-4975"
BASE COUNT          198 a          164 c          142 g          157 t
ORIGIN      
        1 cccgcacctt gcatcctgca gaccccactt ccccatcata caccaaggac gtgccatctt
       61 ccaggagtct ccttcagctc tccctccatc agcaagagga aacccaaggc ttctccaccc
      121 ctatctattg ccataggggt cagcagttac cacaaaaggc ttcaggtgtt tgcagctcct
      181 tggggcagag caaaatctag cggaggtcat gtgccaactt ttcaaatgca cttttatccg
      241 gctgcttttc ttctgagtca ggtgttttgt cacaacaagc agaaacaaag gctttttttt
      301 ttatttaaga tattcaatgg cttttgtgtt cctagcgtca gcaggaacgt cagaggattg
      361 tatccaagga gctaaatgtg caagacctag ggtcaaagca gctgaataca ccaacctcag
      421 aaaacacaga caatgaattg caaatgacac ccaaaacaaa acgggaaaaa aaccttcaca
      481 cagcaaacta caaaagaact ccacagctcc tgaattggct ttctgtacac actgatcctg
      541 cttaactgtg tgtggtaact aaccgaacct tcggagacta atagtcataa aatagaggct
      601 cgggggtggg ggttagataa gaggatggga gagaactgta agggaaaaga ttgcatcgct
      661 c
//
LOCUS       KCLA01001890             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30676upu ultra-conserved element locus uce-4474,
            sequence.
ACCESSION   KCLA01001890
VERSION     KCLA01001890.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30676upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-4474"
BASE COUNT          230 a          146 c          159 g          247 t
ORIGIN      
        1 tttcttgtct tctaatgggc aatggagagg atccagcaga tgatatgaaa aggggacttt
       61 taagaaaaat taagcaaaat taacactaat tatgtagact gaccacaagt actaagaaca
      121 tgcactactg tcgttgctgt catgatttca attacagcat tgtaacttgc gggcttagat
      181 tttattaagt gcttgtgctg actcttttct tcgtgatggc ctgcccccca tgaatgcaaa
      241 aggctttttt gcaatttact cttaacctat ccactgtgta ttagacaact ctattaatta
      301 ttatagactg ttattgcagc tttcctgacc ttcacattgg gtcctatctg tgctgatcta
      361 aatgcattgt tttaatgatt tccaaaaaaa gagaaagaga ggaaaaaaaa gaaaaaaatt
      421 caaggcaagc tttgatgtgg ctttagctgc ctcgatcgtc tggccgcatc tcagagatgt
      481 gtcacctatg ccgggaggga atagggaaat cacgttttga atggtaatga taacatacta
      541 atcacttcct ttctttgaag atagaagcga gatattctgt cagcatccct ggctgctaga
      601 gcttggaggc actggtctag gtgtattagc ttaagtgtgc atgtcaatac agcttgcatc
      661 tcccaagatc cataggggct cattagagca aggtagatcg tttcggtaga cagccactca
      721 gataatatgt atggcacctc ctttttttat tattattaga aagcatttcc tcaattttaa
      781 aa
//
LOCUS       KCLA01001891            1029 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30691upu ultra-conserved element locus uce-1059,
            sequence.
ACCESSION   KCLA01001891
VERSION     KCLA01001891.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30691upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1029
                     /note="ultra-conserved element locus uce-1059"
BASE COUNT          309 a          233 c          230 g          257 t
ORIGIN      
        1 ttagtacatt tgaaaatgaa agcaaaaaaa aaagagtggg acaactcacc ccatcacaac
       61 agtctgcaga cttgatcgtt ggtgcggggc caatagagct ccttggatac aaatctctgc
      121 tcctgagaag ctggaacctt ctctcttaaa gacccaaaca ggtccccacg aaggtgtgat
      181 ggaattctgc aggtagctgt caggtagagg agctatgcaa agaaaagaag aaggagaaaa
      241 acgaaaaaaa agctctctat tgacccacgc gcaatattca gcctcaaaca cagcctcagc
      301 agcagaacta actgttaata tctattattt atatctgacc cgggttacat cttggaaaag
      361 caactcccgc atttctagtg gccactatga aaggtgtgtt tatatggaga cccccccatg
      421 aaaggctcct aagccgtgtg agcacacctg aatagttctg aagtgtctaa ctagctgcac
      481 ggagtgtcat ggtgtgcact gattgcctta tcttctcatt tatcacagat gagttggaac
      541 caaccttgct gaaatctact tgcattgtcc tgataaaatt gcaagatcca tgttatgtgt
      601 gtgtgcagac tcctgtgagg agctgctgtg caccaaccac ggcacaaatg ccagcactca
      661 taaaatataa tccacgctct cgccagccat tccactacaa ccttctccct gccacaactt
      721 ctcacaaaca aaactggtgt agctgttgat gacaaggaag ggtcatggat tgtggccatg
      781 gtggcaatga gatcttttta ttgctgcagt tagatttctg taaaaggtgc aagtgttctc
      841 tccacaggac ctggtgccac tctgtgtgat aaggaattag agtagggatg tctgtccttt
      901 ggagagactt ctgtgtaaca cacgcacagg cctttcttct atggcaaaat aaaccaccaa
      961 gaggcagcat ttgaagctgt tacctgatat tggggaaggg cagaaaatac agaaataaat
     1021 caccggtga
//
LOCUS       KCLA01001892             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30707upu ultra-conserved element locus uce-442,
            sequence.
ACCESSION   KCLA01001892
VERSION     KCLA01001892.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30707upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-442"
BASE COUNT          195 a          136 c          154 g          149 t
ORIGIN      
        1 caccgccggt ttggcctgcc aacgctgctc ctgcgcctcc ctggctcctg gcactccaaa
       61 gcctggccac actgagagac gagcagcagc ccaaagagag ggggcagcag cccctccatc
      121 ccgagcagca gttccgcagg aggagaaggg gtatctgccg tgggggggtg tgtgtgtaat
      181 tcaattagtg cccacaagga tcctagaggc ccaaagttgc gctctgcccc gctcctgcca
      241 gtatcacagg agctattgat aagatgtctg aatttattgc agaataattc tgcaggaaaa
      301 gagataaaag gttcctgaat aaaatatgag gcgagagctg taaattgcag caatgcatat
      361 catttcattc aaatgtagga agcaattacc atctgctata ctcatcagtt ccctccttta
      421 tgacttaatt atatgtttaa tgctatcaga tcaaggaaag ggcacaatag atgaatgagt
      481 gaaagaaata gaaaagattc agcaacaaga caaaaggcag atgaaaagta acccaagaag
      541 ggaattgatt tcatttgtgg ggagagaagt taatttaaat agtatattct atcatctccc
      601 gtgccgagcc gagataatat aaatcatgtg tttg
//
LOCUS       KCLA01001893             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30723upu ultra-conserved element locus uce-2489,
            sequence.
ACCESSION   KCLA01001893
VERSION     KCLA01001893.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30723upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-2489"
BASE COUNT          250 a          188 c          160 g          248 t
ORIGIN      
        1 cagtacttta gagactactc acagtttgct gagaggatcc atgtttcagt gtacccagga
       61 taccttcaat aactgggaaa taattacctc tttcacagct acattagtca aagtgaagat
      121 tctactatca gcttgtacta actcttcctg agctgctcaa aactagaact ataatagttt
      181 cttactaaaa acttgaagaa gaaacaaatg cagttctcat tgtatctcag gaggaggact
      241 tttttccttt aacctgctgc cctgtcaggc cttattattt tcacaaagtt ccaacaattg
      301 tggggtcata tttgttagct gcttgtgaca acattcaaaa ggggcactat atatcaccaa
      361 aacagctcac aaactggcta gtcacattat ttattatgag ccacacatgt gacaaattat
      421 ttaactcagt gactcctaat aagtcaaaga gcaagcaatt agctaacaca gtatgagggc
      481 tgtttgtggc aatttataga tgctctcaag ctgtcacagc acttcaaagt accattaagg
      541 ggagaacctc ttaatgactc acttgagatg acaagcatta cacagcacac atggcagcaa
      601 tgaatctggc agccaattct gttacttgaa gcttccccta cttccccagc agctgtttac
      661 atgtttgcag tttgcatttc tctcttgtat gttgattgtc gctggcaatg tggagagcgg
      721 catcgtcttc ctttgcaaag gagcaactgc tgctcaaaac ctctctgtcg gtaagccttc
      781 agcactgcaa gaaactcaga gctgtgtgat ttttaactag gagagaaacc gccagtgaaa
      841 tctgct
//
LOCUS       KCLA01001894             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30739upu ultra-conserved element locus uce-2515,
            sequence.
ACCESSION   KCLA01001894
VERSION     KCLA01001894.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30739upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-2515"
BASE COUNT          271 a          171 c          157 g          267 t
ORIGIN      
        1 ctgacatgag gactttgcat ggggccgtta tttaacactc cggattgttt actgtgagga
       61 tttcccatgt ccccaccgca acagaaccgg ttccattatt aagtggagca tattaattta
      121 ttggctgcta ttaacacgta gctctcacat caacaagaga aacacaaggt accttttgtg
      181 cttttgactt ggaagtgcta attcaaaggt ttctctgggt ttgcatgcct gtttctccaa
      241 ctgtagcaat tatttcccgg tttgtaatgc caccgatatg ataaacaata tttatgcctc
      301 actgtaaaac attttataac tttcttttaa ttgccttcgc agtctttaaa actgtagctt
      361 agcacttcaa taataagctt attaatttgt ttagcgctta agttcttaca aagaaagaga
      421 caagcattaa ttttgtttag ttaaaacaag ctttgctttt gaacagcagg tggtaattga
      481 aacaaaacaa gggctcatta gaggagcgtc tggtggctca tgatacaaac agagcacact
      541 acaaaaccca aacacaagag ccctgaaata aagtggtcat catctaatta acagaacatg
      601 ttttaattac cgggtaaacc atgcagcgca gtgtgtcaat ttaactgatg tgctaagtgc
      661 cagtttacaa tatcagaaac agacaaataa ttggaatcta attacatcca ggtctattgc
      721 acaccagtgc ctcaagccca tcttaataaa caagttttta catcaaacca tgaatagcaa
      781 atacagccgt gctgttaatt gctacattgt gatattggga ctttgccagc tttgactatt
      841 aaaataagct cttgtgtgga ttgcag
//
LOCUS       KCLA01001895             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30755upu ultra-conserved element locus uce-3812,
            sequence.
ACCESSION   KCLA01001895
VERSION     KCLA01001895.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30755upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-3812"
BASE COUNT          179 a          156 c          192 g          213 t
ORIGIN      
        1 gtctggcttg ctttctcttc ccttgtcttg ctctaatact aagccctcag gagtggtctg
       61 tgctacaagc tacatagggc tgcaaaggcc ttttgagggg atgggcctcc tccctgcctc
      121 ccctcaatgg aagggttggt gttggaggca ttgctccttg ttccacgcca cgcagcgagt
      181 caaactctgc taagtaacta aataaagatg taattttaat gatgattaaa ttgaagcacc
      241 tcattaattt catgtgagag gtggggaagt acacggcagc tctttcccta aattcattgt
      301 ttgtctggcc gcgagacgtc ccctctcaac gtctggttga gcctaattta agtatgtaaa
      361 tttaatggtt cagtaagtaa aattgccttt attgtttgga atggtttgct cagtaattta
      421 cgagctagca aggctcattt gataggagtg tatgatgaag taggtgacta cagtgaagga
      481 catgtttatc ttaaggatac agggcaagaa catagataca gagcatccct aatcagagac
      541 cttgggataa cagtgctgct gggagactca ggcatgagac gcgtcctcag gacaaaggaa
      601 ttctgagagc tctgttcttg ggcaccatgt ggcatgggat agcatttctc accctgtgtg
      661 gctctctcac tggagatcac actagaaggg ggagaccctt gtgcatctgt ttggctgtgg
      721 cagtccctct gtgtgggagc
//
LOCUS       KCLA01001896             286 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30770upu ultra-conserved element locus uce-4719,
            sequence.
ACCESSION   KCLA01001896
VERSION     KCLA01001896.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30770upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>286
                     /note="ultra-conserved element locus uce-4719"
BASE COUNT           99 a           46 c           42 g           99 t
ORIGIN      
        1 ctgtttaaga caatacgaaa aactgctcat gtacatacaa ataattgaga attctttttc
       61 agctttattt acctgagaat gaatttcagt ttgaagaggc ctttatgtcg tttcaggcaa
      121 agcacctaag atacaagcaa ttttcaacaa gagtactaca catttgtctt tataacaatt
      181 tgtatgtaac agcttttatg caaatgacac taaagtggca ccttttttct aaattggaca
      241 tttttatggt tataattttc atctgtaata acagcaaaaa aatggc
//
LOCUS       KCLA01001897             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30786upu ultra-conserved element locus uce-6398,
            sequence.
ACCESSION   KCLA01001897
VERSION     KCLA01001897.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30786upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-6398"
BASE COUNT          209 a          121 c          116 g          214 t
ORIGIN      
        1 cttgtggaag ggattgtggt aactgcaaag ctagaaacac atcttaaagg gattgaaatc
       61 tccttatgtc taaagctttc cctttcaaca cacaccagac taattattta aaagttcttg
      121 taaaattaga agacatagcc cagtgcttta attagaatac tctgtgaata gggacagcat
      181 atggagggga atgtcaagaa gaaggtgcca ggggcagatc ctagaaaatc tgtattcatt
      241 tctgcctcct atttgttcag taatctctac catcataact aaatcttgga gcactgatgt
      301 agttcgagtt gttgttgact caacgtcaaa attcaatcac tgggggtttt gcatcagccg
      361 ggctacttat ttgtctaata aatccgtcat tttgtaagaa aaatatttga gcagccgtac
      421 ttgacctctt gctatccaca agccacattt atttctacca gtttacaatg caaaaaggag
      481 atgatcatct taatgcctcg aggtactatg ttgatttctg attggatttt agatggaaat
      541 gtctatttta aataccccgt gattaaattg tacatataat aaaatccatg cctctcaaat
      601 caaatcccga tttgcaaacc tcgcttttat tttaaaagaa atattattta agcataattt
//
LOCUS       KCLA01001898             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30802upu ultra-conserved element locus uce-7697,
            sequence.
ACCESSION   KCLA01001898
VERSION     KCLA01001898.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-7697"
BASE COUNT          208 a          243 c          236 g          169 t
ORIGIN      
        1 aagtgaggcc cagagaagcg aaatcattgc ctctggagtc cagggagcac tggcacatct
       61 gccattggag ctaatgacag atgagatcac tgagagcagt aactgccatg cccagtgctc
      121 tgcctccctg gtggtggtca atcaatccaa ggacctccca aaggcattgc cccatggaca
      181 ccgacacccc tcagccaaac accaaatccc atctgtgtgg cccccatcac ccctgctgcc
      241 cgccaaggtg tcaggaaggg cagcgccaca ggggggacga cagtcctaga ggcactggaa
      301 tgggagaaga gacagggaag ggctggtaaa caaccccctc ccgtccccga tcccagtact
      361 ttgaagatcc gtgtgttttg aatttaattt tgattttctc gacttcagca gattaaagtt
      421 gaaataacct acaaattact taatgtgttg taaatcttct gaaattaagg cctaatgggt
      481 aacacatgtc ggcaggcagg agacactgaa gggaagtcgg gtttctcacc agcaccagga
      541 atgctgtggg gctgggagcc agggaagagg gggctgtgga ccatgtggag ccgcaaccct
      601 gctcaccagc ctcccaaagc ccaccttgcc tttgggtggg cactaagagg ccaccctctg
      661 gcaatgccac ccacacctcc tggcattggg ggtggaggga ctgtgctggg aggctgctga
      721 aggaagcggg tggcaggact ctgggctagc aagggccaca cactgaggag aacctgcttt
      781 aacaccttgg tttccacctg cccctactgc tcagcccttc agtgtcccgt agagccctat
      841 ccccactcag gatgcc
//
LOCUS       KCLA01001899             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30817upu ultra-conserved element locus uce-3093,
            sequence.
ACCESSION   KCLA01001899
VERSION     KCLA01001899.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-3093"
BASE COUNT          230 a          153 c          143 g          265 t
ORIGIN      
        1 ttagcaaatg aatcaacagt cagacaggta atgatcaaaa agaatattaa tgggccataa
       61 ttagtgatgt tctggactta tttttttgcc aacaaaatct gttgtgctct attgcctatc
      121 tacagtggtg gtaccactgc tcttgctgta atcttcctgt gctgactgtg aaaattgcat
      181 ccagctttac tgggaagttc accaagagat cagcttttga gcaattgtca gaagagattt
      241 ttacccttcc aacctgaaca tgcaagtatt tactgtggtt ctgcagggag atgcttgacg
      301 aaagggaccc tctcctccct cttactttcc tccttccgct gccttttcca acacctccct
      361 ttcataacct catctagata gctattagct ccctctttca ataacactgc tctggtttct
      421 atgaaagtgc tttttaatgt aggagatgta cttcagctgt aacaccaggg tcactttctg
      481 agtaacattt tatgggattg attaaacttt aacaccataa ctgttgactt tataggccaa
      541 ggaagagaca ctgagtgcta agctctgaat aatttgtgct ccacaatttt caaaaaccct
      601 acgatagaag agttaaatgt atttgataaa gcaatcctct attttgttta gtgtctctta
      661 ttttgaaagt ctcacatcat ttaatatgac aatgtcctta aggctaatga agaaaagctt
      721 taataaagaa taagatatat atatggtgtt tggctttgtg gaaagaatat aagaaatgtc
      781 tgatttgctg t
//
LOCUS       KCLA01001900             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30831upu ultra-conserved element locus uce-6700,
            sequence.
ACCESSION   KCLA01001900
VERSION     KCLA01001900.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30831upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-6700"
BASE COUNT          245 a          121 c          120 g          225 t
ORIGIN      
        1 atctgtgaag caaatagaga ataaaggaac aacaggtagc actttcaatt attattttca
       61 ttgattatgt ctaggttaaa taatgggaag tacacccatg cctacacaaa atcgctttgc
      121 atttcactca gccccttaga ataaactagt atgcctgagc atcctggcat tgctaacctc
      181 tgtaaaatgc aataggaaaa agtggcctaa acaaccaaaa tgttcatctg ccttttatta
      241 atttcatttt ttatcttctt gtatacagac gtttgacagc tgtgacattc atgggcaatg
      301 catttgaaaa agaagacata aatattcaga gacatattag aatgctgttc aatgtaagca
      361 cctgtctact tagtgttgac agaaaatcat ttactttgct ttatgcatgt tctctccaga
      421 gactacagag gtcctatttt atttaaagag ctggtcccaa catcagtact agctcttgaa
      481 aatgcaatat atacagctaa ttatatttat taaggaaaca actctggctt atattttcga
      541 taatgcttaa actatttttt tatcctctac ttgagaattt ctttcccttg gggagctgaa
      601 gaaggggaag aagggaatga agggtagaaa aatatgacct tatgatgtct ttattatgac
      661 atcacaaaaa atgatatagg aagcacaata atgcaaaata atacgtcata a
//
LOCUS       KCLA01001901             462 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30859upu ultra-conserved element locus uce-3539,
            sequence.
ACCESSION   KCLA01001901
VERSION     KCLA01001901.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 462)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..462
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30859upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>462
                     /note="ultra-conserved element locus uce-3539"
BASE COUNT          133 a           88 c           91 g          150 t
ORIGIN      
        1 ggtggcaaat taatagaagc attgcttgtt aattgcataa gaggaaagcc aagaattcat
       61 cacctcagtc atggccattg cttccctttg acccccttct cccacaaggc ttttgctggt
      121 ggtcacatct gtggtttttc tatatcctac atatttgccg tataattatt cagcatcaaa
      181 ccttattaat caaatcgatg ctgtgtttta aatggaaatt gctggattaa tacaagcttt
      241 catttcatcc tgaaaatctt gatggcttta gcacatggaa tccaattgga atataaaaga
      301 agggatgtag agacctgatt gaattaggag aggcatgctg cacattaaat tacatatgcc
      361 agcaggggtc catgctttta tagtaaaata ctagtgtaga gtgtatacat cttatatctc
      421 ctgtgatttc tttgcgctag ccagtgctct tgggctaaac ag
//
LOCUS       KCLA01001902             881 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30875upu ultra-conserved element locus uce-5724,
            sequence.
ACCESSION   KCLA01001902
VERSION     KCLA01001902.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30875upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>881
                     /note="ultra-conserved element locus uce-5724"
BASE COUNT          274 a          156 c          169 g          282 t
ORIGIN      
        1 tctgagaatt gctggataca gataatacaa cgtggatttt cagtctttag atcataaatt
       61 tgatctttgg agcagtgcca aatcttagtt tcaacagaaa ttcctgtcca gaaatttcct
      121 tgcaagatga ttaaaatact acaagtgctg acatcagtta caaagatcta cttgtgcata
      181 tttctttaaa gggggggaag aaaacatttt aatacatagt attaccgtag ctagccccta
      241 ttatactatt gtaatcatag ctgaagcaag aacggtgatt aacgatggca atttattgta
      301 tctgacgagg ggagaaaata ggagatgttg tcgttatcat aaatcatatc ataaataacc
      361 aaagagaagc actcagaaag cttgtgtggt gtcagcagca aaccctttca ggcacgttag
      421 cccaggatgt agccatagaa accccaaagt catattgtta tcttagtctt gctgcagtta
      481 tgtgatacaa cagtattaac atatagatta ggccatttat aataccaggt gtcatttcag
      541 gttgacttgc ttatatagca ttttattttt ttattgtgcc gaatgttacg gaaacgctgc
      601 atttttacag gtcagtatag agccatttat aacggatcgg ctgcacacct ctgtcactca
      661 ggctaatgta gtctgttgta gattggttgt actctatgaa ttgtcattgc ctaattacct
      721 tggttttgct aataatttca tttttaagtc aaaacgctcc tttaatggaa aaacctctgt
      781 gcctatagat gtacttcgag gcaagttcct ctttccgttt atgatagctc agctcagagg
      841 gagtaaacag cagaataaaa accatgcaat taatccagat t
//
LOCUS       KCLA01001903             390 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30889upu ultra-conserved element locus uce-33,
            sequence.
ACCESSION   KCLA01001903
VERSION     KCLA01001903.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 390)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..390
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30889upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>390
                     /note="ultra-conserved element locus uce-33"
BASE COUNT          127 a           71 c           63 g          129 t
ORIGIN      
        1 atatacagct tcagtattag taataaattt atttttcagt attcaggcca atgtcttagc
       61 aaacaataaa gtgtggctca cacacctatg agaacagttt taatgaagaa ttttattcaa
      121 tcttattttg ttactttttt cttggtagtg tgagctgtga attaagttaa atacaaaagg
      181 ttttcagtgc actgaattac ctgtttcacc ttgaaaagcc acacaaaatg aagctcttaa
      241 agccttttga aaatgacctt tttcctcagc aatgatttat ctttcccctc gaaaatccct
      301 tttacaaaag ggagtatgat taaaggaagc caagcagcac aaacactcgg tgaagatcct
      361 gcttatctgg aactcacttg acaatgtatg
//
LOCUS       KCLA01001904            1042 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30905upu ultra-conserved element locus uce-2080,
            sequence.
ACCESSION   KCLA01001904
VERSION     KCLA01001904.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30905upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1042
                     /note="ultra-conserved element locus uce-2080"
BASE COUNT          291 a          235 c          236 g          280 t
ORIGIN      
        1 gagaattaat attgactgtg tacggagcgg cagcggcact ccatctaccc acacaatcat
       61 agaaacatac ataatgactc tgaaaagcta atctattcct gggtcctcgg tgcacggggt
      121 aacttctgtt tcaccgcatc agaggacaga ccccgaagcg aggagctctt acgggcggtc
      181 ctgaatccga cggaggaatg caccctttgt acctctagac ctcattttcc taaaaggcgt
      241 ttctccagct ccagaaacgc gcgtgtgggg acgccggcga acgcgggcgt gtggccgctt
      301 acctgtcttg tggaaatgaa atgaaaagcc gtgtctttgt gtaccctgtg agttgtgtgt
      361 ataagcatat aataattcat agtcacataa gctcctggtg gacattgctg cctcagtcat
      421 tcagccccca ccatgaaagt cccctaacaa acaggattaa aattcactcc tttcagccac
      481 cctaggcatt tattccttct ttttcattga gctacatttg tctgatttaa caagataaga
      541 tttgagtgct gatgcaggct gttgttaatg cagcagccgc atccaccgtt ccatcggcac
      601 tgtgcatcag agggatacat aaatcaggta ttcaaaaaaa attagatatg cagcacaccg
      661 ggtttatagt cccagcctca gaaattgaaa tggcccagat taatgtatta tatcttacac
      721 actgtccgag tgaatcaact ttaatatatt gaacagattt gcagaacaag actttgttat
      781 ctaaggagca ctcagaagaa ggaattgacc tgaggatttg atttggttca ggtagttcat
      841 gttgtagagc agcatttgaa tagtttcaca taaaaataaa atttgtatca gaaatagtcc
      901 gcatcactct gggcgcgcgc acgctggagc tctgcggcgg ggcggccgta cggaaacgct
      961 gtccagtaaa gagatggttt taacctttgc tgccgatgtg tcaaaacaat gcgatgtaat
     1021 tttaatgcga actgctattt ca
//
LOCUS       KCLA01001905             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30921upu ultra-conserved element locus uce-4968,
            sequence.
ACCESSION   KCLA01001905
VERSION     KCLA01001905.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30921upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-4968"
BASE COUNT          136 a          126 c          140 g          173 t
ORIGIN      
        1 aagaaaagct tttcttttct agccacgcat taggcaacag aaagaccaat ttgcagagct
       61 cgtaaatgcc acttgttaat cacatgcagc acaattattc cattcttttt ctttcccccc
      121 tctgaagtgt taagtcaact ttttagcttt ttatgtaatt gaaatttgcc cttctgttac
      181 ctgggcatga attattcttg aaatgttgtc atcagcagcc tggctgtgag gtttctctct
      241 tcccttcatc ctaaggaaat aaaaggtgct gctgtttgct ggtcttgcgc tgaagcaaac
      301 tgctgcctga aggctggggg cagccgtgct tgttgcagcc gctgccgttg actaacacat
      361 ttactgttag attttcattt caaagggctc agtctgtgca atgtgacagg tgagtggtga
      421 ctgctttaca ggactttcaa gagctgaaca aacagggaag gacttactgc tagcctggcg
      481 gagtggcagg tacagatgta aggcaccctt tgtggcagag gagagcttcc tttgctggat
      541 aaaggccgct cgggagacct gaagggcttc gctta
//
LOCUS       KCLA01001906             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30936upu ultra-conserved element locus uce-5080,
            sequence.
ACCESSION   KCLA01001906
VERSION     KCLA01001906.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30936upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-5080"
BASE COUNT          233 a          119 c          119 g          271 t
ORIGIN      
        1 ggaagttaag taattatttc attgatcaat aagcctgatg atgtcctcat ggcattggta
       61 tttaatagtt tatccatgca tatatatgtc tgttgaaatg ctctgatggt aaattttttc
      121 atgataaatt caagatagag aaaacaatat tatatggcat tgtctaataa actttataat
      181 aaattgaaat ttaaattttt aaatcattca tttaaacatt tgaattatag ttacaggcta
      241 gttgactctc tgtgcatgtg aactctatta tgttgtcaga ctgaccagtg gtcttgactg
      301 tgcaaaggtc agtggtcaca gttgtcctga attaccagtc cttttttcat gtggaccctc
      361 tgcggcgttg catgctgtaa tcttcttaat ggcttcattc caatattcac acataatatt
      421 ttagatttat tgactgttag aaatactacc atgccagtag cagttccgct actcctaagg
      481 tatttgaaat tggaaaaata aatcagtgca agactttcag gaatcctttg ttttcttaga
      541 tgggggaaaa aacttctctt tcctctcttc tgacaagaac acttgttttt agatttcatc
      601 atttcactca gaatttgtgc attatttttt taattaaaaa ataactgctt ctgtgcagta
      661 aatctcctaa tgtaataata cttaaatcac cactttaaga aggcataaga aacagtgctt
      721 gggatagaca caaatttata aa
//
LOCUS       KCLA01001907            1136 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30952upu ultra-conserved element locus uce-19,
            sequence.
ACCESSION   KCLA01001907
VERSION     KCLA01001907.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30952upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1136
                     /note="ultra-conserved element locus uce-19"
BASE COUNT          394 a          204 c          212 g          326 t
ORIGIN      
        1 agcaaatgtc ttccctttct cagctgtaaa gtctgggtag caggaaaata ttacactgcg
       61 actgctagaa atgtttttca acctgacaat ggaaagacaa agagttccct aatcatgcaa
      121 cattgatcat caattcaatc agttcttgac agaggaagaa ggtgggctgt ttgatattta
      181 aagggactgt atgctcaggg gacattgaat tatccaaaca tcactgctaa ggaaaatagc
      241 ctaaaaatta tgtcatttat ggaaactgaa agtttcttgg atgtgtgacc tagctgcaac
      301 ttacctttaa ccttaagagt ctcttctttc ctttcccagc agttatgaag ccaagaaaaa
      361 tcagtagagg atctaaactg gggacactgc acagagaagg aaacaaaaaa tgacttcaca
      421 ttcagacttt aaagagttaa agaagtcata ctatttaaac agggttgcag aactcctatt
      481 aaaaatggca gtactataaa tgttctagta ttgtcaggaa tgttctgttg gatgacacta
      541 tactgtgatt tgtacacaca gtggaccaga gctgatgggt gaatgaaatg atccataacc
      601 ctcactgaca catttagagc agttcagctg cacacagaga acagtccatc atttgcgccc
      661 ttctgtgaaa gctggcttta ccaagtgttt caatgaaata tgtgcaactt cccatttaaa
      721 ttagtaccac atgaaccatg aagagcacca caggtatctg ttgtagtacc agcctaatgc
      781 aaaagtggcc tgtcttgtaa tgctctaaca ggaaagacat acaactattc atctgtaaca
      841 tattaaaacc agaagaaata aattactcta tagatgaaga attattgctt gtggagagaa
      901 tgtgcaaagg tagttctaaa aagcagcttt tactaaaaaa ttattgcaac agcatttgaa
      961 ttcctaatgc atattaaatc tagttcacat aatcataaat catcactttt aaatcaagaa
     1021 aatctgcttg aaacttttta gaggtttatt ttactagttc aggactattt cagtatcacc
     1081 actgaggaag cacagtagga gtgactataa gggtgaaata taaaacttag ccattt
//
LOCUS       KCLA01001908             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30966upu ultra-conserved element locus uce-3402,
            sequence.
ACCESSION   KCLA01001908
VERSION     KCLA01001908.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30966upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-3402"
BASE COUNT          206 a          109 c          118 g          176 t
ORIGIN      
        1 gtgtttgcta accagctgca ggatttacaa tgcagaatgt gtgatttctg tagcattatg
       61 ctgcaataaa agtaaacaaa agagattaat caaaacaagt aaattagtat tacccatttc
      121 agatgttctt taatgcaaag ccaatagttc ttgcccttta tgcacaggct cctacagtaa
      181 ctaatgtaca gtggccatca acaaattacg actcatgaca cttttgctgc tgcagtatta
      241 agcccaaagt cctatggaga aaatatatgg gttttattac caaattgttc ttgtttacaa
      301 ttctaaaatc ctcttcatta tctacgtttc cagacatttt aggcagctct gaagacctgg
      361 ggcagcacta gtcctgtcat aaagagaaat taatgttgtt aaagatggcc tagctgccct
      421 ctgggacagc tgaagatgtg aaaatataag gttctgtttt aaagatgaaa atgattaaag
      481 gcacaggcac cttgctcata gtgcagccac taaaactttt aataaaatac ttcagcagaa
      541 aaaagctgcg ttacttcttc cactgtaagt cttaagaaaa aaaatgagag agaatgggga
      601 aggggaagg
//
LOCUS       KCLA01001909             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30981upu ultra-conserved element locus uce-4038,
            sequence.
ACCESSION   KCLA01001909
VERSION     KCLA01001909.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30981upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-4038"
BASE COUNT          242 a          132 c          145 g          230 t
ORIGIN      
        1 atcattagca agtattttca ctgtcaccag tgaaaggtta atagaagcct ataattttca
       61 gatagatcgt tttgattagc tgctcagaaa tcccctttaa aaaagcggat aaattgttcc
      121 acgccgaaaa cctgagcctg cgtccaattt gtgcataaat tgcaattgtc tttctaatag
      181 actctctgga aggtgcgggg ttgccttcaa agtaatgatt taaacataaa ctgacccttg
      241 atgagggagc tggagcttcg gcttaatgcg attctgcact tttccttcgc cttcagtgcc
      301 ttcagattgc gcacaaataa ttccttcata acaagtgcct tttcagaaga tgtgtgctgc
      361 tgacagttaa tataaaatta ttgcccctga atgcatcttt gtaattactt cccagagaac
      421 tgtctttgtg ttggaagaca tttcacactt tagtaacgta agtgtttggg gagaacatga
      481 gtaataatta caagcagtct ttcagtgaaa ataaacctaa aaattatgga aaaagctaat
      541 gttaaagttg gttggagaca gcgaggaatt tatttagcac gttacggctg tctgtgtgtt
      601 ttccaagttt aataaccctt cagtaactaa acttaaaaaa agcaataaag agctgcgaaa
      661 ctgctttcta atttttaagc aataatgaaa ctaaaaattg attaaaagtg acgtgctgct
      721 agagacagac taaaggaact taatctgaa
//
LOCUS       KCLA01001910             265 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 30997upu ultra-conserved element locus uce-5243,
            sequence.
ACCESSION   KCLA01001910
VERSION     KCLA01001910.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="30997upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>265
                     /note="ultra-conserved element locus uce-5243"
BASE COUNT           86 a           53 c           58 g           68 t
ORIGIN      
        1 gggaaagaga gaaaatgaaa tccagatttg taattcctaa caggagaaat ccgatccctc
       61 ccaatgttta agtaatattt cctgtaaaac atacgaggcc atctgcagag ctgtttccag
      121 acacatttcc aagtggcaag ggcaactgaa agagacccga atggatgctg gcatttcacc
      181 tcggggagat ggagcatgaa aggttgcgaa aagctggttc taccattttc caaagtattc
      241 aaatccgtaa tttgtttaat ttacc
//
LOCUS       KCLA01001911             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31013upu ultra-conserved element locus uce-6856,
            sequence.
ACCESSION   KCLA01001911
VERSION     KCLA01001911.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31013upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-6856"
BASE COUNT          262 a          164 c          173 g          287 t
ORIGIN      
        1 ttccactcac ttctcacgga aatattttct attccttcta tccccaaaat tcaactaatc
       61 tgttgtgttt cttcctattt gcttttaata agtgttgttt attgtttagt tacaactgca
      121 agtctttttt gcagtcttct catttgggtg tatcttttgc gatcagaaat tgtgtctctc
      181 tggcaaagga gcgtaactgt caaaggatta agccacatcc tgatcagtgg aagagacttc
      241 cttaaaaaca ggcagggaaa gatttcctgt agttaacagc aatgagggag aagaacttta
      301 gaaacaactc tctatttgat agctacaaaa atctagctaa atcttaagga tttagccagg
      361 gaacatattg gttccagcag actatggtaa agttaattaa ggatgattaa tggagcattt
      421 tccttccaat gatatctgtg acagaacaaa gctgtctgag gcttgtcaag cagaatttga
      481 gttgaatgag tatttatgtg atcaaatctg aagggctgcc tcttgacaga gcaaggattc
      541 atcaatcaat tgcgctggct tgcagtggtg ggaaattggt ctatcagcat agctctactc
      601 ccatccccca ttttttcatt caatcatccc ttaggctaca atgcatcttt agcttttacc
      661 tctgaccacc ttaagggcta tcagggaaaa gtaaaagcaa gagctaaaac atctattata
      721 gtggttattt ctcagctgta ctcatacaat tgatttcttt taagcagagg cccgggcact
      781 gtaaagtgat acaaggctgt tcaatgaatt aattggtttt aatagaagtt tagctttgag
      841 gctgaagaat acatagtgtt ctagaaagtc tcctattagg aaaacc
//
LOCUS       KCLA01001912             981 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31028upu ultra-conserved element locus uce-3688,
            sequence.
ACCESSION   KCLA01001912
VERSION     KCLA01001912.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 981)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 981)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..981
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31028upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>981
                     /note="ultra-conserved element locus uce-3688"
BASE COUNT          280 a          205 c          191 g          305 t
ORIGIN      
        1 taggtgtgct tataacgaaa gctagaatag atacaccagc agtagaaacg tgctcattgt
       61 acaatcagca agttcagttt ccaaacagca gtgctgaagg tgaggttttg ggatgtactt
      121 atcttggcca ctcatgtttc tgtatgtcag gagaaagatg taggctgtcg gcacctaagg
      181 atgtggccct gaatctcact cagatgccac gtgtgtgagt gtcctagcaa aaggtttgac
      241 aacagattca aggtcaatac ttagaaaaaa aagaagcctg gttaatttac tttcattcat
      301 gtacttggag ttaggcagca tagaaggggt taaccataaa gtatttcacc ttgaaccttg
      361 cactctcttt atctagcaca ccataataaa agatcaagag ttcctgctta ttatcttatt
      421 ttttcctcct tgttccacca ggctagggcc cagactagtt atggattaac actgtgatca
      481 atagtaagct tgctgtctca ctctcggcag gggaaaatga actcaaaatg cagtcaaact
      541 cttattgatc aaggatatag gtctcacttt cattacctct gtctcctgat aacccacata
      601 taatgtgatg agttgctaat ctctctgatt ttcaatggac ccttcacccc tcctgtctgc
      661 acagtaaagc tcttattttt gcctcttctg tgtaatgctt gtagcattaa ctctcactct
      721 attatcatca gacctggtca atcaggactc ataaaaggac ttttaaatag aatcggccca
      781 gctgtgttag gtttatattt gggtatttcc aagcaaggga gttacccttc aataataaac
      841 agatcagata ggtagtgaac agtgcttcac ctccagagat cagttagtta agtctactga
      901 agcccatctc agaagacggt gcttgcatta agaacatatg ccaagctata ttgcatttgt
      961 agcttttcat ttcatttttc t
//
LOCUS       KCLA01001913             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31043upu ultra-conserved element locus uce-3122,
            sequence.
ACCESSION   KCLA01001913
VERSION     KCLA01001913.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31043upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-3122"
BASE COUNT          232 a          152 c          131 g          252 t
ORIGIN      
        1 tttttatttt ctctcctgta ccaagctcat gcaacataca tggactagtg cagaagatct
       61 tgggaggtca taaaacagag ctgacccatc tcaatgaaca gcttttctct tttgtgcttg
      121 tgtgtactgc acatcctatt ggaacacggt cccaaattgt aatgatgtcc caaatcacag
      181 gattaatgtg tctatgaaca gacctcttat gcctctagaa tgaagtactc cttgctaatt
      241 tctcttcaag acaccagctt aattgcattt taaacaaatg ggctgctttg ctggccaact
      301 tttaaatgag ataacagcaa tgttcactct ccagcagtga tgagtgcctt gcagtagatt
      361 caaaactctg ttcaataaca ggtttaatct cacaccagca gatttactgc agaataaact
      421 gccactgagc tcataattag taaaacaaaa aaacccaacc tactaaatat tattttccaa
      481 agcagcaggc tatgttttag tggaaatttt tagttcttgt ctttgtatgt tttattgatt
      541 ttatgtatga tattgggaat tcatgctatg atttaagata atggtcttta tcgatcgctt
      601 aagcagttgt ttagctacat agtaacaaaa tgatgctcct attcacagaa tatgtgatgc
      661 tgacagcagg gagaccacag tgctcccttt cttaatgttc atgtcttttt tccaaaagca
      721 tattcactgc tggaaaacat caactgaaaa catttgtgct ttagaaa
//
LOCUS       KCLA01001914             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31059upu ultra-conserved element locus uce-3011,
            sequence.
ACCESSION   KCLA01001914
VERSION     KCLA01001914.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31059upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-3011"
BASE COUNT          244 a          155 c          148 g          243 t
ORIGIN      
        1 aacttctgag ctgtatattt taactgaatg cactcgagag tctcgagcat aagtaaaacc
       61 atcctggacc atatttcatt tttcaaatgg gagcatcacc ttttgaaaag ctagagtgcc
      121 tcagtcatca gccaagctgc ggttgttaag ggatgcaggc ccttgtccag gtattttaaa
      181 gtaaatattt tatctaggga aaagtatggc attcagaatt tggtggtgca aaaggccaat
      241 aatatgtgac agcatgatct cattagaaat aggaatttta gcccagtgtg atctgagtga
      301 ctagttccaa aatgtgcagt gaattttata gtttgtctgg ctggcggagt tccatgctcc
      361 tgcattcccc aatggtaaat atttgtaaca gatttcacat tgtaacacaa gggctccttt
      421 cacagagcag gtcatgtaac actgcaaaaa aatcagggcc agggcaaata aacaaaaagt
      481 catgccaagt tcaccactcc cagagattcc taagcctggc tgcgcatgca aacttcactt
      541 gctacacatc aacatcacca gtttatagcc agatggttat aaatttacat tctataaaat
      601 tttagaggat gttatttttt ccactcagtt tgttaattaa gtttcagtct ttttatttcc
      661 tcaaacataa cagttgaatt ttttattaat gatacagtat catattcttt cctgtctcgt
      721 agtacaccta ctcagcagta ccaagaaaac tttcatgaaa tgaaagtaaa ggttttgcag
      781 acggccgatc
//
LOCUS       KCLA01001915            1261 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31074upu ultra-conserved element locus uce-5522,
            sequence.
ACCESSION   KCLA01001915
VERSION     KCLA01001915.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1261)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1261)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1261
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31074upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1261
                     /note="ultra-conserved element locus uce-5522"
BASE COUNT          279 a          326 c          314 g          342 t
ORIGIN      
        1 ggccccatgc aggagctcct gttgctcttt cctgatcgca ctcctccatc atagagtgga
       61 gctaatgtgc attcctccac gctgttaatt cttatctctg gaggtgctga ttttcccctg
      121 aaactagtga gaggaccttt tgaaagacag gccatcactg tgttggatag gaggatgggg
      181 gcatgggaag gaagggtgaa agactctttc tgcatggagg aattgcagta cagcgtgtct
      241 gtaaaagcat ggcacactgc tgccaggact gattcacccc ttcacgcaca gtaatgttct
      301 taggagggga cagtgcagtg acacgaggca cgctgacaca cggctgtgtt agcgtggcca
      361 gaccctggaa ggaattccat cctgagggag ggaatccagg agagtgatcc tggcttctga
      421 gagacacctc ttctggggaa tgctgggaag ccccatggag tcactctgac aaacctgcac
      481 cccagcaggt ctcccaggca gttgtggttc tccttctcct ttgctttcct gccaccagtt
      541 gattacactc ttaacgtgag gttttttttg acagacattg ttggaactgc ccgtcctgac
      601 gagaaagcca tcatgaccta tgtttctagc ttctaccacg ccttctcagg agcccagaag
      661 gtatcacagg atcccaagct ccctccacag agcacacctg ctaatgtcca aacctttttt
      721 tctttctctc tctcctctct agctacgggc atctttatta ttatgttctt ggtagagttg
      781 gctgttggtt caaagaggtg ccccagacgt aatatgtggg gcaagggagc caggagtccc
      841 atttgcctgt cagtgatatt ccccatggca ctcaggaagt tctgccttct ccatttgcct
      901 tccagacctc tgccttgatg gcttagggcc ccatgttcct gggagatctg agctaggatg
      961 cttggtctca caaagatgga gactaccaca gagatgttct gctcagcagg acacagcagc
     1021 ctgccctcac tggactcaat gctgatgtct attagctttg tttttcaaag atggagaaca
     1081 acactgactc ggtggtttta tgaagggttc ggtgaacacc caaagcttta tcttttactt
     1141 taggtatgca gcaggttcct gcacccttgc ttcaaggtct gaactcactg ctttctccag
     1201 ctgtggcaca aatccagtcc cagttcacct ggggcttaca aagcatgtgt aacgggtcag
     1261 t
//
LOCUS       KCLA01001916             653 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31089upu ultra-conserved element locus uce-7507,
            sequence.
ACCESSION   KCLA01001916
VERSION     KCLA01001916.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 653)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..653
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31089upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>653
                     /note="ultra-conserved element locus uce-7507"
BASE COUNT          224 a           92 c          121 g          216 t
ORIGIN      
        1 aatacaattt ttgcaatata ttttgtagaa acagttatga atttgaatta aaatatattt
       61 ataggcttta atttagcaca caagcaacaa gcatggacgt actgttctat caccttttgg
      121 atatctttgc attttaagtt ttgaattcac tgcatgcaaa atccagacaa gtgtgcataa
      181 aaaaatatac aggacattac ttatttatat gtaaaacctt tattctgttt tgttatttta
      241 gattaaatcc cgtttcaatt ctattctctc agggaagcac taacagtttg agctcagcgt
      301 gaaagccatc aaacacttga gctgaaattt agattgggca attttgcctg gtgaagtaga
      361 aaaggacgtg gaatggcaga gaacagaata gcttatggaa aggcagatgt tttaataact
      421 tgttgtctag tgggatcctc aaatatctaa atttaaacac tgcaatatag taaagggcat
      481 tgctgtcggg ggatatactc ctttactata tgaatcagtg taaatgtgca tatttaagga
      541 gtgtgcagac tttaatgtaa catttctttt acaacagaag ttagaattaa gtgaagatgt
      601 gaaaagaaat aatctcagac tgcaaaattt ggcttaggtc tgcattgcaa aat
//
LOCUS       KCLA01001917             920 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31105upu ultra-conserved element locus uce-6638,
            sequence.
ACCESSION   KCLA01001917
VERSION     KCLA01001917.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 920)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31105upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>920
                     /note="ultra-conserved element locus uce-6638"
BASE COUNT          242 a          204 c          183 g          291 t
ORIGIN      
        1 tagtgtttgt cacatgatct cgctgcacgg catcacaaat ctcccatctc tgctttgttg
       61 gcctatatgc atgaataatt ttcccagtgc ttgtttgtag ctgagcagga gaaagagtat
      121 tactgccaca caatctcttg ttgttgatga tcagcattcc gatggtctga gctggcttac
      181 aacagtgtaa agacatcagt ggcatgtgtt ataatatatt gagcattgtg ctcgtgaaga
      241 acgtacgaaa gaaagaacat tgttctacta gggagcaatt catcgggttt ttcccagaga
      301 ctcttgggtc aagtttttat aggcctattt gatttccaaa ttcttttttc ccctttttcc
      361 tctcagtgag ccatagtgtc caaacttgtc tacatttact tcccatgttt tgtgcatggt
      421 agatgtcctt taaaaagagt atctcaaata agtctttatt cttgttttgt tggctcttat
      481 tctgtgtttt catgaactct ggccctggcc atggcaactg caagaaaaat gttaacattg
      541 attgacagga ttaagaaagc ctccatgcct atccgcattt caaacacttt gggaacaatg
      601 gtgtttggtg tgattgaatt aatgagatat ctcggactgt caaaagagca cacatacttt
      661 acataaacct gattatcttt gcatagcaga aatgaaaaaa ggagggaaca gaggtttggc
      721 tttcactcat acctccaaag gagccatcaa agtgtgtgcc ctggctcaga gagtgatgtg
      781 cccgctcaac tggcctgccc tccctttctc tccacatact gcctagctct gcttagcata
      841 catcagccat ggactttaac aagtctattc aggctactgg gcccacaaca acactctttt
      901 cacaacatag cacctctgtg
//
LOCUS       KCLA01001918             496 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31121upu ultra-conserved element locus uce-4980,
            sequence.
ACCESSION   KCLA01001918
VERSION     KCLA01001918.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 496)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..496
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31121upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>496
                     /note="ultra-conserved element locus uce-4980"
BASE COUNT          147 a           97 c          114 g          138 t
ORIGIN      
        1 gaaggaatgc tctccagtgg actgccgcct gtcactgctc cctgtcatgt gtccgataat
       61 taaaatctga ctgatttact gactggcatc aaccatcaca gctcaagagt tagaagatgt
      121 tcatccttcc caaggctaaa tttacttggt gaaaaggggc tgcttgcttc tagcctgagc
      181 tgtcattcag ctgccgtgga aaccataaag atagctaaca gagccccagc cagcagtctt
      241 tagtttattt tattctaata tttattgcca gccagaaaat gaacataata cagacaagtt
      301 agtgagagca ctgcactagt gatttgtgag gctggtgcga agtgagagca aaacagtcct
      361 gcagtagtaa aataaaatag aacagtggtg tttcccaaaa gtatggcagg gctggagatg
      421 tgtttatttt aaccctaatg gggtacaatt tattattaca ttttaagtag atgcactctt
      481 ggagaagagc agggct
//
LOCUS       KCLA01001919             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31137upu ultra-conserved element locus uce-1602,
            sequence.
ACCESSION   KCLA01001919
VERSION     KCLA01001919.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31137upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-1602"
BASE COUNT          262 a          160 c          144 g          250 t
ORIGIN      
        1 tctttcatag gctgcataat gcagggcctg ggaataaatt atagatgaaa cccccatcat
       61 atgtttataa atacactaac attagcattt tacttcctca taaatctgca ccaaacattc
      121 aggcgcaaga tagaaagccc tgtaaaacaa tgatatattc tctgcttgca agacttgcct
      181 agtggcccat tcatttctac tgctgttctt caaacattac tttcttcgct catgccccct
      241 catttaaaat ccattttaat ttaaagatgt tcaacgcagt cctagtggta catttactca
      301 tcctggttat acatcatgga gcagggaaaa gaaaattgtt taatctagag atacggttca
      361 ctgtggtcac cactgaacag tggagtaatt accagatcag ctccgctaaa aatgcactca
      421 gggtgttctg tgacctatca tcgtctaatc tgcatagtga agtatagctt cataactata
      481 aattgctgac ttaattaaaa ccaggacctt tctgtcattt aattacaggg agaaaggtta
      541 ttgcttaaat gcaattttcc aaatgtgatt tcttaacagt tattaactgc ttcaccatca
      601 tttattgttt cagatttttc aatttgaaaa tagtcccagt gacagaagta atgacttcat
      661 gaaaaactca atctagatgg agctaagcag acccatttgt ttctcgtaag tggagcagac
      721 agaaaacttg aaaatgtcac aggaggatcc cgtgattgct ccactttaca ggagtaatta
      781 aaaaccaaga ggttgtatta aaggtgaaga gaggag
//
LOCUS       KCLA01001920             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31153upu ultra-conserved element locus uce-7755,
            sequence.
ACCESSION   KCLA01001920
VERSION     KCLA01001920.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31153upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-7755"
BASE COUNT          219 a          190 c          185 g          253 t
ORIGIN      
        1 ggttttttga gaaataatct gtcttggtcc aaaagtttaa gagtgtattt agtatctgct
       61 tctgcctcca cctctatcgg atctgcttcc accacggcca ccacctctgg gtgctccgcg
      121 gcttgaacta ctgtaagaat cacgaggagg tggatagccc ctttccatgg atgggggaag
      181 gcccctgtct tgtcttccaa ctcgatcacg gccacttgag tagacatcac ttctgctgct
      241 tgagtaactt tctcggcttc catatccatc tcgtgtgctg ccgtaatcat cgtatcgact
      301 gcttccacca taagatggcg ggggccctcg tgcaggtgga gcactacgtg agttacctgc
      361 agggtcaatg gtcaggtaat atggcaacac cataagttat atataacaat ttcaatctga
      421 actaacagaa tttctgcata taaatgctta ttgctactct tttgcatgaa ctgagatgct
      481 cctaattgca tctgccacat tactggtatt gaaagtgggg attgcatatc aggcagtgag
      541 tggatgtaaa gattctgaag gaacgaagat ggtgtttatt caggcaggct ctttactggg
      601 tattccagaa cagcttgtta ttttagagaa gaaactcagc catgttttcc agagatagtt
      661 ccaattctga actgtagact ttgcttcttt agcttatggc ttacttaaca agatgatcaa
      721 atgacagcca acatctgcat tttcactgta gggggcgtgc cacttccctc taaaatgagc
      781 aacccagcag aagtcaaatt ttatgacacc tgtatagacc agtacatgat ccttaaaatg
      841 gattctt
//
LOCUS       KCLA01001921             959 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31168upu ultra-conserved element locus uce-7012,
            sequence.
ACCESSION   KCLA01001921
VERSION     KCLA01001921.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 959)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..959
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31168upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>959
                     /note="ultra-conserved element locus uce-7012"
BASE COUNT          307 a          180 c          177 g          295 t
ORIGIN      
        1 atcttttaca gataaaatta aaattctgaa agtccctgga acaaaaaata aagaaaaata
       61 gtaaaaatat tccctcctga aatgacggga aacttggaac ttgtagtgtg aggctagttt
      121 gtccatgttg caatgaatag agaatagcct gtacagtttt tcatatctta cttgcaacac
      181 aagtttagaa catacagaaa ttgttcccga attctttgac agtaactcaa aggcatgaaa
      241 agaaaaaaga aactcaagaa gaaaaagcca tttaaaatta aatcagaagc ttcaacaaat
      301 agatttttcc cttgcagtca aaaaagtaat tatcaaaatt gttcagaata tgctgccaat
      361 tcctgtgctc cataactgct aactttctca gttcttctcc tgcctgttct gggctctctg
      421 tcactggaaa catcttaaac caatttaaag tgctacacct gaataaacat gttgtaaaag
      481 tgtttatgta ttgaagtggg tcagttcaag gtatggtatt tggctggaac ttcgaatttc
      541 tctttttact gcaaaagggc tgccagaagg aggaagtctg agctgaatta atacatttgt
      601 tacagtggaa gtagaatgga aactacttta accacaaatc aaactgcctc tttcatttat
      661 gccagtgata gagtttttct aagaaatata gactttggca tacagccact ctaagtttgt
      721 ttctgaaaag gaaacctata tgcttatttc tctaaagttt actcctgtgc ttatttgcaa
      781 gttctttttc aggctgattg cgttaggggt attctacgtt tgtgaggcag atgctcctac
      841 cacggagcaa atttttccag ttttttcagg agaatctcca gacattccag tgctgcgcaa
      901 tgcacggggt gcctgttacc agaccttcac atttaaagga ccatcgtgcc cagcacagc
//
LOCUS       KCLA01001922             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31198upu ultra-conserved element locus uce-2530,
            sequence.
ACCESSION   KCLA01001922
VERSION     KCLA01001922.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31198upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-2530"
BASE COUNT          271 a          192 c          106 g          222 t
ORIGIN      
        1 tattttaaat gagaaggcca gtcaccactt tggtgtctga agaactcaca gtaatcactg
       61 actgatatag cttgagttat tccaatccag cttaccaccg ccacactcac caagaaaggc
      121 gggattctat atattctgag cctctgcact atttctgttt agcttgagtg tatcatgaac
      181 aactgtgatg gcttatgatt cactatgtat tttatacaat gatccacgca aatattaatt
      241 atgataggta atcagcaaag cccacacaca atttccttca cttcaaacca tactgacaat
      301 cccctttgct gcttacgtcc ataacccttt gttcccctgc acatctccct taacagccca
      361 ataatctttc ctcatactct ataaagttcc agaactccca gacaccatct ggccacactg
      421 agttgtgtgt ctacttaaag tccaattgac atgcaaacta aatgcaaact acaaacagaa
      481 tttaacagca catcaccagt tttaagacac aatccgtcaa acattttgaa ggactacgaa
      541 gaaaatacac cctacacttg ctaatcactg gacataatgt ctgacattca ataaaccctt
      601 taatagtcta ccaacatttc cccaatagaa aacgtactgg caaattaaga tttctttaac
      661 agcacagaaa aaaaatccct gtttataaaa aacatacagg tatttaatta tttgaaaact
      721 aaaacaagtc ctataatctg gtgagtctat acctacaatg aagaaaccaa agccccactg
      781 taggaatcgt t
//
LOCUS       KCLA01001923             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31229upu ultra-conserved element locus uce-5225,
            sequence.
ACCESSION   KCLA01001923
VERSION     KCLA01001923.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31229upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-5225"
BASE COUNT          183 a          109 c          119 g          192 t
ORIGIN      
        1 actctactgc tataaggaaa gagttgtgtg aggaagaaag agaaagagct gttcatcaaa
       61 ctcactgcac agaacctcca gtcattgcag ttggctgggg gaggttttag ggggaggagg
      121 aggaacggga gaagtattag ggctgtgagc cactattcat ttacaaacta taattaattt
      181 gatgtttaga ttaattcctg atgcactctc aaaggtgcac tgaaagcatt tttcctttat
      241 tataatgttg attgcttatt ggggagataa atctaactgt cagttatgca ctgacttacc
      301 aaaactttca gaccaagcaa gcatgtatgc ataaggaaca gctgtttgca gctctgcagt
      361 taaagggaca gctttgtctt ttcccaataa ctcacattaa agaaaatcta tacactgtac
      421 acagagaatt ctgctttctt ttgtagctta acaatttatt agacaagaat ttgttagcag
      481 aatccatctt ctatttgtct gtctgtccat gtatttatca ctactctatc tctccaccaa
      541 ggtgataggc agagtccatt cagaatattt ctaagttatg catatctttg tacatactta
      601 cat
//
LOCUS       KCLA01001924             721 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31245upu ultra-conserved element locus uce-4824,
            sequence.
ACCESSION   KCLA01001924
VERSION     KCLA01001924.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 721)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..721
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31245upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>721
                     /note="ultra-conserved element locus uce-4824"
BASE COUNT          243 a          132 c          142 g          204 t
ORIGIN      
        1 ggaaaaaggc tttggtcagt gttatattca atagagaaat ataaatccaa gattctggag
       61 gagtaggaaa aggaaaaaaa gcccacacca cagacgctca agtgttcatt acccaaatct
      121 ttgcaggaag cgattgaata gaattaccta caaagagaat gtggcatttt aacattatac
      181 aatcatgttc ctcatagcag gtgacatcta tctccttgac ggaggctgta tctcaaaaat
      241 acattcacgg agctgtctat aaattcaaat aaaccctgca atttaatttt caacatatcc
      301 atatgtttga gaatcaagct ttcagcaatt gagtacagtt tgtgttgata ctactgtacc
      361 cagtgaataa ggaagaaaca atgcagtgcc actgcagcta cagccaggtt tggcaggggg
      421 ctgggggaga gaaaggattc gtcccagtgt tctgggtcta attcatgatg caatgaatag
      481 aatttcccag aagttcatcc tttcttgttt ggtcaaatgc agcctttttc atggtttaga
      541 ggaactatgt cattgcttag ttagaaacac aaagaaccaa atgtatcatt gtgcaccctg
      601 gaaatgcagc caagaatcct ttaggaaaaa ctaaaacctt aaatgcttta ggaaaaataa
      661 tacagtagag tgcacatcca tttcacttct taattgtata ttttcagaat acctgatcag
      721 t
//
LOCUS       KCLA01001925             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31260upu ultra-conserved element locus uce-5852,
            sequence.
ACCESSION   KCLA01001925
VERSION     KCLA01001925.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31260upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-5852"
BASE COUNT          176 a          104 c          107 g          194 t
ORIGIN      
        1 ttgctacatg taaggacaca cactataaaa aaaatattta ctcagttgtt cctgttctgg
       61 ggaaaggcac atacattgta ccccactatt ctatgttttt aaaaagtgac ttatactttc
      121 catttcaaat gtggtttctt taatgaaaat attgtaatgt cagtccatgc aaagcaaatg
      181 catattaata tgcgtttaca tctgtctcat attaatattc atgcttgaat ccacatccct
      241 acacaaagcc aattttctga ccatctgtgt gatggctggt ggatgcaatg aataaatttt
      301 atttgtgagg gaagtgataa atcatgtatc ttcagctttt caaccacaat ctctcttctt
      361 gggtgctaaa gtgttttcat tgtggctgag aatttcaaag taaaccaaat tgattaaccc
      421 cttagcagat cgtgtaagtt catttgccag gtgaacgtcc acaagaaatg tacagggtac
      481 agtaggactg agaaagcagc acagcgactc tgggagtttt attcatttga ttttgaatta
      541 tttctgtctt ggaatcacac ccaatgtgag agtataggct g
//
LOCUS       KCLA01001926             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31276upu ultra-conserved element locus uce-219,
            sequence.
ACCESSION   KCLA01001926
VERSION     KCLA01001926.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-219"
BASE COUNT          188 a          104 c          123 g          176 t
ORIGIN      
        1 ctctttaaaa gaaaaaaaaa tatataatga aaacattttt ttaatagtgc atctgaaata
       61 tacattaagt gactcagttg ttttgataac taagtaaacc ctcacaagct tggcaaggct
      121 gccactgtag aggcgaacag ctgtacaatg gcagcagaga ggctctgtgt tctgtttaaa
      181 cacagtcagg cagaagccag tggataatgc tcagtaatgg gttaatcaat acttattatg
      241 gttttattgg ttcactaaag agagaagaga acctagtgag cacagagtgg aaaaatcact
      301 gcatctgatc tagataacat cttctctccc ttagggattt ccctattcaa gaatccaatt
      361 taccatgcct gattgacaag gattggatcc tagggaatca cataactctt tttaggaccc
      421 aataaaatcc taatggattt gtctgactgg tcaggagatt caagttttac taaactgagg
      481 ggctttgttg caattagcct gtattctact tgcagttgaa aagctattag gagccattgc
      541 tttctaaaat gctggagtca tgctgggttc tgaatgccag atagagttag c
//
LOCUS       KCLA01001927             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31291upu ultra-conserved element locus uce-4760,
            sequence.
ACCESSION   KCLA01001927
VERSION     KCLA01001927.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-4760"
BASE COUNT          126 a           80 c           83 g          142 t
ORIGIN      
        1 attataaaac ttttagcaag aggctaatga aatgcaaagc tttctataag actagcacta
       61 gccttcctat caaatcatct gaaatattta tttgccctct tgaataattg ataggggcat
      121 cagctctccc ggtcaattga tttattaagg gactgtttgg aattaaacag cttaaagata
      181 ttagatttag cagcgacctt gcttgttagc atattcattt acctacggga gctcccatta
      241 gatattgtta atacatgacg ttcccagtca cggcctggat ctcctcaaat tgcattaaca
      301 ctgggctgtt tagccacaga ataacaggtt tgattgagtg cttgagcttg gtgtaattag
      361 attttcctag aaaagggggg actcttttaa tgccatgtgc tttaaactag atatgtcatc
      421 agcattactg t
//
LOCUS       KCLA01001928             319 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31307upu ultra-conserved element locus uce-7962,
            sequence.
ACCESSION   KCLA01001928
VERSION     KCLA01001928.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>319
                     /note="ultra-conserved element locus uce-7962"
BASE COUNT           95 a           78 c           52 g           94 t
ORIGIN      
        1 cccaggcacc cgttccaaca acgttgtttt ttccttgcgt gctataaatc agagcactaa
       61 tctttcactg tccagagaga tctctcactg ggagggtgat aaattgccct ccagcccctg
      121 acagctgctg ggaaatcact cactgcctga gacaaacctc taaatctgac attatagagt
      181 gttgaaagga agaatgtctg tttttataac ctacctcagt tataataaat atttaaaatc
      241 cacattaaca tcctcttata gttacaatct gccctctatg gaacagtgtc caacttagat
      301 ttaattagca actgaacct
//
LOCUS       KCLA01001929             536 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31322upu ultra-conserved element locus uce-3526,
            sequence.
ACCESSION   KCLA01001929
VERSION     KCLA01001929.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 536)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..536
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31322upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>536
                     /note="ultra-conserved element locus uce-3526"
BASE COUNT          153 a           92 c          116 g          175 t
ORIGIN      
        1 tggtttaggt tgtaaaacag ctctgtgggg agtaaaggtg tagctccggc aagtaatgac
       61 attaaaaatc ctctccttat gtgatactcc tgcaagtcaa cacagaacgt gactgtctgt
      121 taaagaacag ttatttcaca ccctgcatgt gtttgaaaag caaagaaaag aatctatgct
      181 taaaaattag aaaacaaata atatgtttat gtttctaatc ttcgtttata gcaccagcag
      241 caagtggtgc aggctgtgga gcgggccaag caagtgacca tggcagaact gaatgcaatc
      301 attggggtat gtgctctttc tggtttagct ctaatagtgt ttgtaaatag cttctctttt
      361 tctttctttc ttgtatcaac tcacttccac agagtgggta aaagttgtgg gtagtggtca
      421 aattcagtag atggatcttt actatctgaa aacattttct tgtgttgttt caaggcaacc
      481 aattggatta ttactgtctg tgttgtatcc attccagaaa actgggtcag tatctg
//
LOCUS       KCLA01001930             917 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31338upu ultra-conserved element locus uce-7211,
            sequence.
ACCESSION   KCLA01001930
VERSION     KCLA01001930.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31338upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>917
                     /note="ultra-conserved element locus uce-7211"
BASE COUNT          195 a          238 c          225 g          259 t
ORIGIN      
        1 gttattcctg gagacctttc ttctcttggc agcaggagac ccccagcacc aagatcccag
       61 ccagcccctg agaaccgctg caggcttgaa cacccagatg gccagcggcc actatttatt
      121 catcatcccc cacgctgagc tgggagggac ccagctcaac ctcctgttcc ttttcccggt
      181 tcatattgtg ctctgccgtt cctatttctc gtgtaagagt gggaaacttt tctctctgtc
      241 ttattaaatc tatttttcaa gctgtcactt aagcaggtct agtgacagag tcggatgttt
      301 atgtggccct ggacacttga actctggtgt tttcaatcac aacagcacct tttgccagcc
      361 gttgtgaatt aaatactcct cgtgaccttt tcccctcgcc gctcttaaat tcatgcttta
      421 aaaacagctt aatgaggggt ttactggccc aattggaagt ttttattaaa acctattagt
      481 gtgctagagt agcctgcctg aaggaaacga ttagcccaaa gcaactcaac tccgagctgg
      541 cccctagcca caccaggttt gctctaaact gtttccagac ccacgttaac cctaacaccg
      601 cagcctgcat ggaattcata tcctctgctt taatttatag ctggtctctt gctctgccca
      661 gccttccccc accctcccca aactggttgt ttttaatgtt gttagacctg agttaagggt
      721 gatgggactg gcttggttga gaccagagtc ctctactgtc ctggggatga ggggtgggtt
      781 ccgcttggac agagctgtgg ggctctggag gttctggttg ggtttccagg gaggagcatc
      841 ccagcatcgt gttggtgagg tttgatgtga gggtgggagc tggaggctac tgcacggaat
      901 agggagtcaa agggagc
//
LOCUS       KCLA01001931             450 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31354upu ultra-conserved element locus uce-3426,
            sequence.
ACCESSION   KCLA01001931
VERSION     KCLA01001931.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 450)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..450
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31354upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>450
                     /note="ultra-conserved element locus uce-3426"
BASE COUNT          113 a           93 c          111 g          133 t
ORIGIN      
        1 aatgacaata aaaacccttc ttgtgaatct gttcgggaac tttttacgtt attagcagac
       61 aggcctgtgt cctttccttt gatgatggta acaagttcta tgacattgcc acgttgagtt
      121 cttgcttcat tagattgggt gactgtttat ttgaaattgt aatgaaatat ttactttata
      181 gagctataag gattagcggc gataattgag tgaggctgat ccggagcttt cagtgtaata
      241 ggggcccctt gtttgaatac agagcgcggg gagaatggag gggcgaggga gcgcgtttct
      301 gcctgtcact ttccctctac atgttgcttt ttctcccgga gataagtggg cccaacgctg
      361 aacaaatacg ggaaatcaga agccactgag aatcattcgc ctctcgcttt cccatggcag
      421 cgtgatagac tctcgctcaa aagagacccc
//
LOCUS       KCLA01001932            1116 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31369upu ultra-conserved element locus uce-5265,
            sequence.
ACCESSION   KCLA01001932
VERSION     KCLA01001932.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1116)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1116)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1116
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1116
                     /note="ultra-conserved element locus uce-5265"
BASE COUNT          299 a          298 c          216 g          303 t
ORIGIN      
        1 ctggaccatt tcctctctgc tgcattgtat ttctagcata ctgctggtaa gctgaagtcc
       61 cttatgaaaa caaggggtga gacttctccc agttgctaca ctatttcctc ttcatcttgg
      121 ttggatggac tctcaccaca gtatctgcat tgtttgcctt cttcctgatt cttattcata
      181 aacattttgt aatcactatt gtaacatgtt agaaaataaa atcactccct aacatatggg
      241 gctaccccac tgtctttcct tccttgccta acttttctca agaatttata gccaaccact
      301 gcagcacttc agctgtgtga gtcatcccac catgtttcca tgacgctaac tatcaatgta
      361 tctatggttc agacacacac tgaggagata atgaagggtg cctgctccct cccaccagct
      421 ctgtacctca cagaggaagg tgaagatgcc ctgatgttcc ttgagaagct tggcaatggt
      481 gaggttgctc tgcttgatcc cacctagtgg gtcaaagagg aggtcacggt tgagggtccc
      541 cttcctctcc tccgtccaca cgtcgatctc ttcctggtgg tacgcgaagg tgcagttatc
      601 tccgtactta cagtcctgct tgttaagcat atctacaaag caacaaacag cacacaccac
      661 cacacaggga gggcggccca gtcagaaact aaactctctc ttatcaactc ccactgccca
      721 cacctcacaa gaagctgaaa gcaagagaac acagggttaa agaaaagaca tctcccccca
      781 aacttttgta cagcaagaca ttcggggaag ttaacacaaa ttactgaatg gtgacaatct
      841 taagtagtga catctgtggt ggaaactgtc ttgaaatgaa tgtctgcttt aatccagtgc
      901 cagaccacca tttaaccaac cccttttaaa gccagtccag attaagttat gctattggtc
      961 cagcactaag gagcccagtt atcttcgttc ttgccaaccc ctcacctcat taggtacttt
     1021 ctaatgacac ttccgaggga tcagtctcat cacattgcca ggctggcaaa aagaaacagg
     1081 cacagagagc ttttccctgg gcagaactac tgtcat
//
LOCUS       KCLA01001933             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31385upu ultra-conserved element locus uce-6239,
            sequence.
ACCESSION   KCLA01001933
VERSION     KCLA01001933.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31385upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-6239"
BASE COUNT          140 a           45 c          122 g           71 t
ORIGIN      
        1 caatagccag ccattggctt ggagcagagg atcaggttcc aatagcactc aatagggagc
       61 cttccttaaa aaattagaag aagctgggtt ggagctggtc catgctggga atggcagaag
      121 aagcaaaaac aagagtaaat gaatggaaat taagcagcag gaaatgggga tttggcacaa
      181 ggttggaatt tgaaactgca gagaggtgtc agtgataaag gttggataga gtttctggcc
      241 aaaaacagaa agaaagaatg cagatgtgtt cattgaataa agtacagatg tagaaagtgc
      301 aggagggggg gctggcaggg ggagagagga ataaagaact gaaaaaagtg gaggggaaaa
      361 taatgcagca agtaggtg
//
LOCUS       KCLA01001934             253 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31400upu ultra-conserved element locus uce-1932,
            sequence.
ACCESSION   KCLA01001934
VERSION     KCLA01001934.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 253)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 253)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>253
                     /note="ultra-conserved element locus uce-1932"
BASE COUNT           74 a           51 c           51 g           77 t
ORIGIN      
        1 gtcctgtgga acacgtccac acagctgtga attgcaattc attaacgtca gagtggaagg
       61 cgtgttttct cataggcaca acccaatata tcttgcttcc tacttacaaa aagatgttta
      121 ttacctgtaa gtgtacagag gtgtgtgctt cccagcggca gcgattggta ataagcctcc
      181 ttttctcatt tacattgata gcaagcatta gtgaagatat atgcatttca tttcatggtt
      241 cagaaagaac aaa
//
LOCUS       KCLA01001935             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31416upu ultra-conserved element locus uce-746,
            sequence.
ACCESSION   KCLA01001935
VERSION     KCLA01001935.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-746"
BASE COUNT          182 a           87 c           93 g          168 t
ORIGIN      
        1 taaagtatcc aaatggaatg gatctgcgtg agtgccacaa taaatccaaa taaaaatggt
       61 ttaaaatagc taatgaattt tctggaagag atgtgactgt ttttcatctt gttgagcatt
      121 ttttcactag tgcaactttg gaatttttat gagaattttg gtaccttaat gaccacctcg
      181 ctccgtgctg gaagcaataa acacaaagct tttaaagact ttctgacttg actaattgag
      241 gtcgctttcg tcagaggcag aggatgtgta acccttaaaa cggtcttcat ttgcaaaggt
      301 aaataaatca aataagattt taatctcact taatttatct taatataacc aataaaaacc
      361 agggagagag agcttcactt tagaatgtag gaaagactcg gaggacacct aaattctcat
      421 tttaaaacgt ttaatttgtg gtagtaatct aaaaagcctt agtttagcta gttaaagttg
      481 gacaaactct tccctattaa acaactgtaa aacctcataa ccagtagttt
//
LOCUS       KCLA01001936             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31432upu ultra-conserved element locus uce-3452,
            sequence.
ACCESSION   KCLA01001936
VERSION     KCLA01001936.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-3452"
BASE COUNT          194 a           92 c          107 g          225 t
ORIGIN      
        1 tgttacggaa ccattagaat tcatgtataa tagtaggtga ggcgtttcat attggacaac
       61 ttgggggaaa agggcaacaa gatcctgctt tcttctaaat attctaagcc atttctgcat
      121 cttgagttag tataaaacat atttaaaaat gtatatggtt caaatttttt tgctttgcac
      181 aggccataag gtactggtgt ggtgggtcag ttttgacact gaaaaatgaa tccagttaga
      241 gaacctcctg aaggctgttg atgattgctg taataaatag tgcacacttt aagtcaaact
      301 ttttcattct gtattcaaag gtaatggatt tttcgtaacc atagtaacct tagtgtattt
      361 ctggataaat acatgaggta tatacattct ggttttattt ttgaatataa actaccacat
      421 tatgtattac taataatatg aaaaatagga tataggttag cataatgaca gctcaaacta
      481 gtgtgcattt ttcttctgca aaaaaataaa tatttatcaa aagtagaggt tcaattaatt
      541 tctcccccta gttttctggt attcttgtag tgccatttat cttttttgca agatctccat
      601 taatctctta ttgccata
//
LOCUS       KCLA01001937             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31446upu ultra-conserved element locus uce-972,
            sequence.
ACCESSION   KCLA01001937
VERSION     KCLA01001937.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31446upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-972"
BASE COUNT          209 a          146 c          167 g          252 t
ORIGIN      
        1 ttaaaataca cccatcgagt tacacactcc tggtacagca gcagcagggt ctgctctact
       61 actaataata gtgaatatgt aaatcctcca cattttcaga agcagtgctt taggttgctt
      121 ttactgtaaa caaagatgta ttttgggggg cagttggctc gagtttattg tttatgtaaa
      181 tctctccgaa tgtgacatag ccagatagct tcctatgttg tgctgatcca cgttttaggc
      241 cagcagccaa agtattttat cttttacttc attatagtga tcttccaatt agctgtggtc
      301 tgtaataccc tgattttggt ggcagtggtt tggggaggat tgtttgatag ttctgctcga
      361 gaggcaaaat gaggggcctt attatagaaa gtgcagaggt tgtgcagtag ctgagttctg
      421 ttgcaaagtt tgccgataag ggaaaactgg cccttgagca tccattctat tctgtatatt
      481 aacacttcta atctgcactg ctgataaaac tgcaagccat ttgcctttgg aggaattagt
      541 tctgcctcac ttgtgtaacc aggcgatggt gattaacctt taaactgtcc aatattctca
      601 gcagactcct gctccagatt agaaactatt tagttatgac caactaaatt aacaacattc
      661 cctcctctga agaataagat ttggaaggta tgcattttaa ggtggaatgt ggatattgtc
      721 cgtatttatt caccactttg gctgcacaaa gtgtatttgt cagtcaagac gaga
//
LOCUS       KCLA01001938             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31462upu ultra-conserved element locus uce-610,
            sequence.
ACCESSION   KCLA01001938
VERSION     KCLA01001938.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-610"
BASE COUNT          177 a          127 c          101 g          213 t
ORIGIN      
        1 cttccaaggg agctatgagg agcacagcac tcctgtggtc agcacagtgg aacgttgcac
       61 acattttctt caccctgctg tgactcattc cagtaaagca aggtatttct gtccagaaac
      121 atcctttgca gcaaactttc tgaccatttc acagagggca cctttgcaaa gaaatcactc
      181 ttcgtatgct actttgtggt tttctctagt tactctcccc atcccccctg cactccccaa
      241 aaaattcagg ggaattccag aacattttgc aattagctaa ggattgtatt tccttatttt
      301 tattaatttt atgtaaagtg ggatttatca gtggagcatt cattgacact gacttcaatt
      361 tattctgatg aaactgactg acatctgtgt gtgctgttca tcagtcataa tttaaaccat
      421 tcttaattgc attaaatgta aattaagaca ttcaatttca gccattattt ttcataaaac
      481 actgtgaact gaattttagt gggtcataag atcttacatt caaaataaat agggtaaatt
      541 cgaaacttac cattgatgtt catatttcac cgtttgtcag ctgtatttct tttgtagctt
      601 actagattgg aacaatta
//
LOCUS       KCLA01001939             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31477upu ultra-conserved element locus uce-5269,
            sequence.
ACCESSION   KCLA01001939
VERSION     KCLA01001939.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-5269"
BASE COUNT          119 a          142 c          109 g          137 t
ORIGIN      
        1 taattggata gcgtattcaa gcctgagctg ctcttgtgag agcgccggct cgcccagctc
       61 cggcattaac cacctcctga aagagcctct cagaagagct cgcttttcta ttattacttg
      121 ctagctgagg ggttttgtgt agataatcat gttatttaga taggatggtg gtttaattcc
      181 cttcattacg ggctggcggg gttgtaattt ttttcccccg cccgatgaat tccccgtggc
      241 acatttcact caaaccaagc actcggcgct tttattgcaa acaatacccc ggcactgcct
      301 gttatcagcc tggcgcacac acgcgccttc ctcacgcgga tccagaggtc acttctaatg
      361 actaatcgat ctcattagct ttcctaatta aaaactttac taccgcagtg gaagacaaac
      421 tacaacaaca accactcgca tcctatctga atgggatatg agcctcgttt gtcagccggg
      481 gctgccggct cacgctcagc ccaacag
//
LOCUS       KCLA01001940             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31492upu ultra-conserved element locus uce-6618,
            sequence.
ACCESSION   KCLA01001940
VERSION     KCLA01001940.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-6618"
BASE COUNT          199 a          116 c          123 g          162 t
ORIGIN      
        1 ctagatgatc tttcgaggtc ccttacgatc cctaatgatt ctatgacatc tactcctgta
       61 actgatacaa agggtctgtt cacttgcaat agtttaaaac ttctcaaagc aactcatgaa
      121 ccgtagaaag tctgacctgc gaggcaaggg tgatgcttgg ctgagactgc aggaggttgg
      181 cttggctttg ctgaggtagt tgcgttaaga gattctgcgc ttgcaggaga cctggaaaga
      241 gaaaagagtg ggtttagttt gtctttgaca tgactaaaac aagaaatgag ttgaaacaat
      301 gctccagtca aataacaaga tactcaaatg tagatgcaaa acttcatttc atccctgcat
      361 agccattttc agactttgga attttgagtc caaaatcccc ttccattttt ctaacatata
      421 catggtgaca gaagagtgaa aagagaagtc tgtactagac tcctctgcaa aaaaagcttg
      481 cagagttgaa gttatcccag tcacgcatgc aggaatcgct gctcttttca gcttgcaacc
      541 aacagaatta gggatcctta taaaaagaaa caattaaaaa tcatcagata aaaaaaaaaa
//
LOCUS       KCLA01001941             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31508upu ultra-conserved element locus uce-3652,
            sequence.
ACCESSION   KCLA01001941
VERSION     KCLA01001941.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-3652"
BASE COUNT          189 a          154 c          149 g          256 t
ORIGIN      
        1 cttgtgcttg tccgtaggga cagctttgct ccttcccaga gatacacaga gaactagcag
       61 tgggcttgct agtactttac tgcaagcatt gtctcgtttt tctccttatt tgtttctccc
      121 catgttgttc tatttctttt cccttatttt ttttgccttc ttcctttctc ttctttttct
      181 cccccttctg gttgattctc cttctcagtt ccttcattca ttctttcctc tttcctccca
      241 tttatttatt cagagcaaat tttcaaatct ataaacccat tacagcaaag agactgtgtt
      301 gaggcagcct gtgagcctgc agatgtggtg ggtcctggat tccaataaca gaacttattt
      361 ggaaaaaaac attatctgta gtgtggaaat ggtttggctt gagggtaaaa tttatcatca
      421 ttaccctaat atcatctcaa gcctcagctc tggcagcagc taaagaaaac accaaggctt
      481 aattcagtca gtgcaaggaa agagagacag aggatggaaa atatgattta tgatggaaat
      541 caatgcaatc ataatacttt atgcttgtaa aattgggctg ttccaatagt gctcatggat
      601 tgcttaggca gcattccacc aaaaaaatca tggcaagatg gaacgcagta gtaagatggt
      661 gcagctggca caaagggatt gtattcagtg ttaggagtgt gatttggaac aggctttgtt
      721 ttgcaggggt ttcaatttcc ttccttct
//
LOCUS       KCLA01001942            1051 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31524upu ultra-conserved element locus uce-5410,
            sequence.
ACCESSION   KCLA01001942
VERSION     KCLA01001942.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1051
                     /note="ultra-conserved element locus uce-5410"
BASE COUNT          300 a          235 c          232 g          284 t
ORIGIN      
        1 acccagcaat gaacctgaat ttgtagaact gaaaatagaa ttagacagtt taatacccag
       61 gaagctgctt tgactatttc acgacgtgtg cagcgtacga ggaaaaagag gagagaagca
      121 ttttatcccc cccctcaaac aaggtaaagg tcttattcag cactcaaatt ttcctgatta
      181 tgaggtgaag ccaagatgcc ccttttgtcc tttcttatgt atttttttta agatgaatgg
      241 ccgtggcgtc agcgcgacgt tctgtcaggt tgggcacggc ggagtcaata ccttcacctt
      301 gacacggaaa ctttgtgatt tatcagtcgt gccgcgactc ggcgctaccg cgacctggcg
      361 aggtgcagcc actcatggca ccgggagcag actttggtca cagctacttg gaaaaaaata
      421 aagcagtctc tgatgataga caaatgcgtc ttgttagcaa cagccaaaaa gcgcttgact
      481 tgtactaata acaaaaaggc catgttggtc accatgggtc taaagacgaa gcaccctgtc
      541 actgccttgg ttgggaaatt agcaaataat gttccttttc cttgataaat gggtgacagt
      601 tctctctcac caatcatttt ttaacatttt gatgcatgtc tatgatcccg ctggaggaac
      661 agaaaagttt actggccctc aattttcaga tgatgaatgg aacactctaa atgtgcgatt
      721 tctgtatgag gtatagttca ttttaagcaa ttctagtaaa tgggtgtcac tgattaggac
      781 aaatagtcta cttgtgcaat agcacaaatg gtatgtctca ttcttctggc ctcctctgag
      841 acagaaaaga aaggggacaa caatgaccct gataaacccg gaattgctgc tgtttaaaga
      901 agagctgtta tataatgcac agcacccaac ctgctagcga ctcgacgtcg ctaaaccgtt
      961 cctgtacgtt tagcgtcgcc ctattaatta gaaatggatg tcaggccaaa cccccttctt
     1021 tacaagaaag ggcagcaccc gggctccctt t
//
LOCUS       KCLA01001943             983 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31540upu ultra-conserved element locus uce-6228,
            sequence.
ACCESSION   KCLA01001943
VERSION     KCLA01001943.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>983
                     /note="ultra-conserved element locus uce-6228"
BASE COUNT          236 a          275 c          230 g          242 t
ORIGIN      
        1 aacatgacag gaacttgaaa cccgatgctg gctctccgct ggaggcacgg gtatgtcgag
       61 cagccagcac caccttcagc ttcacttttt gattaatgtt cttccaaact ttccttggct
      121 ccctgcgctc ccactttctg tcacccttct cattaaagat gtatctttgc atcgaggaaa
      181 gcgggaggaa aaattgttct ttcagggtga cagctgagcg agggctatat tattaaaggt
      241 accaatcata ggtgccgagc tatcatcgca cgatgaatgc acttgtcagg agcccacagc
      301 ggccaaggga gagagagagg gagagagttg gtgggacaga agcacacact tccttgctcc
      361 tcaattccgc acacaccccc caccccccct ttaatgttgg ccacctctgc tcgcctgaac
      421 ttggaccttc agcggcgaca atttctctgg cctcgacagc acgattaatt tctcctgccc
      481 tcagcggggc ctccaagtgc ggtagaagtc cagctggcct gctgctgata agatgtacct
      541 tttgatttgt tttgtctttg attgcctttt ctgtcaccta caatggctgg ccgcctggag
      601 acctccacat cgcctgactg acggatctat ttatctatag gctgctcccc tgcttttcct
      661 ccccctcgct cccctcctcc cccaaaccac caccttgtac cactgaagtc tcagtctaat
      721 agaagccgtg aaggctcatc caccataaaa tacatctgcc atcctccttc tctccaagat
      781 aaaagcctgt cagtgttact ttccaattcc aggcagcttg attaatggtg aaaagccact
      841 gcaagatcga cttctggttt ttacaagcgc tgtcagccgg cccagggtta tgcgaaacac
      901 acactcggag aaaacaaaac aaaatgagaa aaggttgggt gaggagggag gagagggatg
      961 ggaaggaggg ggtgagggta acc
//
LOCUS       KCLA01001944             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31556upu ultra-conserved element locus uce-4882,
            sequence.
ACCESSION   KCLA01001944
VERSION     KCLA01001944.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31556upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-4882"
BASE COUNT          209 a          184 c          148 g          220 t
ORIGIN      
        1 acacacggta tgtttctgtt atcgagtaca tgagtggcat tttgaaactc gggtcaaatc
       61 acagagagca ccggcctgac gatgccagtt cggtggcaga ttgcttgatg gatctgtcat
      121 cgttgcaacc aacttgtgtt tcaacagtct gccacgctta tatttacaga ttaaacccac
      181 tatttttata aatgaaagag ctctcccccc cccatctctt ccttctttat ttttaattaa
      241 aaccatgata tctgtcgttc tttctgtttg agattcccct ctcaaacacg acacagataa
      301 aacaaacctc gacgccttag cgattcgcca ggcagtaaat tctcctttcc aaacctgccg
      361 tcttcattaa aatcttattt gcttggtaat ctcctttgat cgctaaagtt ataagaagcc
      421 cctccctctt cttttgatac tatcagtgta gcttttgacc agagagcgtg atgaattaaa
      481 tgtatgacag atatgacagg tgaggagtgc ttggagaggg cttaaacagc agggataaga
      541 caaagccccc atttaagaac aaaaccccta cccgatggct agcccgttaa tgaccaacca
      601 ctctatttgt cctggtggat gaggagcaag ctgatactac agacaaagct ttgttagcca
      661 tagggctgct cttcaatcag gccacacaac caactaattg aaatgcccag ttttcccctc
      721 aggatttggt atacaagctg gaggtttgga ggtacactct t
//
LOCUS       KCLA01001945             729 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31572upu ultra-conserved element locus uce-6272,
            sequence.
ACCESSION   KCLA01001945
VERSION     KCLA01001945.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 729)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..729
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31572upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>729
                     /note="ultra-conserved element locus uce-6272"
BASE COUNT          243 a          154 c          109 g          223 t
ORIGIN      
        1 tgggattaaa tgagcaatgt tgttttacat atttaaaaac tatgctgcta aagcaagata
       61 taaaagtgta gcaaggctga tcatagagac cttagaatta aagcccctca agaatcccca
      121 tctctctcac tctctttccc tctgcatttg caacagagca gctgtgcctc acacacattc
      181 acatgaatga aaatattaag gcgagaaacc acccacttag tttattttcc atatgacttt
      241 cctgtaatta ttttgtaaac tgttcacaca acaatatata aaaacatctg caaaaacagg
      301 taattaatgt gtcaagccaa actaatgcat tttttatggt gtccatgctt cgtcaactgt
      361 aattataact ctttttaagc aaatgatgat gtgtttgttg caatgtgcaa gtgcttattt
      421 tagatgctct gtttactatt actgcaaaca gaaaataaaa actctacagc tacttctttg
      481 cacatacaag ccttcatcta cacaagcgca agcatgatgc tccctcattt tccaaaagct
      541 tcacctattt caaagaaata aaagtatctt aacatgaaaa ttggctttgg aaaggctgac
      601 caggccaccc actgacgaaa gtaacagtat ccaggacatt aggacagcag ccaaccacct
      661 aaaatttgtt ctttaatttt tacttctaag gacagctctg ctacagttta tttatgaaac
      721 tggacattc
//
LOCUS       KCLA01001946            1054 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31588upu ultra-conserved element locus uce-6245,
            sequence.
ACCESSION   KCLA01001946
VERSION     KCLA01001946.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31588upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1054
                     /note="ultra-conserved element locus uce-6245"
BASE COUNT          296 a          223 c          221 g          314 t
ORIGIN      
        1 ttagcagttc tatctcataa aaaattctgt gatgcatgaa cagtagcttc agttttctct
       61 ttctcttctc tttctaggtg atgtcattgt ctatattaat gaagtttgtg tccttggaca
      121 tactcacgca gatgtagtca aactcttcca gtctgttcct attggtcaga gtgtcaactt
      181 ggtgctatgt cgtggatacc ctttgccctt tgatcctgaa gatcctgcca acagcatggt
      241 gccacccctt gcagtaatgg agaggcctcc ggtagtggta aatggaagac ataactatga
      301 aacttatttg gaatacattt ctaggacttc tcagtctgtt ccagacgtaa cagatcgacc
      361 accacactcc ttgcactcca ttccagcaga tagtcagctt gatagcacat tcccaccacc
      421 tgcccatgat gataatgtat caatggcttc ttctggggcc acccaagctg aactcatgac
      481 cttaaccatt gtgaaagggg cccagggctt tggcttcact atagcagaca gtcctacagg
      541 acagagggtg aagcaaattc tagacattca gggatgtcct ggtttgtgtg aaggtgacct
      601 cattgttgag atcaaccagc agaatgtaca gaacctgagc catgcagaag tagtggatat
      661 acttaaagaa tgtcctgttg gaagtgaaac ttctttgatt atccatagag gaggtaagtt
      721 tggaaaatct ttacaaaaat gtgtgtaaaa ggttctaaac cataagacat acatatactc
      781 actacatcct tgtgtgctag attggaattt gcaggaggta acaccactgg tggaaaagca
      841 tgcctgcaat taagtatcct ggacaaaacc taactgcttg ttgcacattc ctttttgtgt
      901 tttgagtgtc aatggtccca cctctgtgta agggtaaaaa tagagcagct ccagaccttt
      961 caccctgtaa tcctttgcat ggagtctgca caagtttaaa atataattgt atgtattgac
     1021 taattaagat agatcaacgt tagagctgtt aaca
//
LOCUS       KCLA01001947             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31603upu ultra-conserved element locus uce-27,
            sequence.
ACCESSION   KCLA01001947
VERSION     KCLA01001947.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31603upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-27"
BASE COUNT          296 a          166 c          178 g          281 t
ORIGIN      
        1 agatgccaca tactatcaca tgaacaggaa agacagttca gtgccatcaa tatggttaat
       61 gcctacctgg caaccaaggc gtaatgtact cagtttacat cgaaacaaat ggaggttgga
      121 ggatagcaga gttccacgaa taaatctttt atttcccaag cttcctctct agaaaataat
      181 tttcttagta ttgttttcat aaaagctttc aaatacccta aaataatgca gagaaattgg
      241 cttttatttt gaacaggatt tctcaatatg tgctgcatct cttggcgtat ctattatatt
      301 aactagagcc ttaatgacac aatggttaaa aacagagtac agatgtgtat aaatgaaaaa
      361 tgtaatagat ttccctctta atgtaataga attggcacga ggtattggaa acaggagtga
      421 aagtagtcac tcaagcattg tgtttgcatg ttatttaaat acaagtggtt gaggtataag
      481 tacctctaag tacacctgaa agagatggtg ccttgtaatc attgtttcag caattgacag
      541 ttgtttacac aacagcagca cattctctac tgatttgaat aataaacatg tttaaacacc
      601 agctggataa tagaaggata attgaaacat agtttgaagc tctgatttac aggcattgtg
      661 gcaacacttt tatttgtggt acaatgctat acttctgtgc agcctcttga aaaaattaaa
      721 caggcattgt ttcaagcaac ttcgggatat atttaactaa tctatcctgc gtttgtatgc
      781 ctacacagac agacagaaag agcacaccac caaaacttca gaggctcatg ctggtgtcca
      841 cacgctgctt gagctactga gtttcacttt gtgttggttg ggcccttacc ttatgcagtg
      901 ggaactgttg ccattacaga g
//
LOCUS       KCLA01001948             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31619upu ultra-conserved element locus uce-2310,
            sequence.
ACCESSION   KCLA01001948
VERSION     KCLA01001948.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31619upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-2310"
BASE COUNT          245 a          202 c          183 g          326 t
ORIGIN      
        1 gttgaaacaa tattctcact cctctccata gatccacctg ccttgtggct cagacatgct
       61 gcttgtttaa tcacttatgc ttagtccccg tatctcctcc aaatttctca gctgaggaac
      121 tatttaactc tgatactgca gatttgtcag gtcagtgtct gcctatactt ttttttccct
      181 ggttagagtt taaaagtttg taattagaga ccttcccttg attggtgctt tcacaaggca
      241 tttttagaat tatattgacg tttagaatat tacatgtatg taaaatgtca ttaagatgcc
      301 ttcggagtta ttggagtgac gtgctgccca gacagcagca cagaaccgtg tgtgcgcacc
      361 cacgtgctga tgtaatcatt tctccaaatg ttctcatttt ccctcagaag attcttccag
      421 aaataccctg ctctagggtt ctgctctgat gtttttttca tgagaacaaa gattagtcct
      481 tcatggtcct aaactcaatg catgtgcatg acttaaaggc attacctacc aataaatagg
      541 agattagctg cggcttgtgt atttcctgat cagttcaggt tttttcagat ggctcgttgt
      601 tatcccgttt cctttaacga tgggacactt taatgagttt gccatctgac atacatctgc
      661 ttcctgttaa acaatacctt cattcttcca gagctgctaa actcatcttt tatcctacaa
      721 gatttttatc tgcaccttga aaacggagtg tacaaatcag tcagcatatt cgttttggtg
      781 ttgagagctt ttggggcact ttttgagaag gaacagcaaa acatgcgcat cctttagagc
      841 ttatttgaga gaacttgggt gatatttgtc taagtagggg cggtcatcac agctcctgtt
      901 tcaagaataa gattgacttc catggttaac acacggtttc taatagttac agcaaa
//
LOCUS       KCLA01001949             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31634upu ultra-conserved element locus uce-5634,
            sequence.
ACCESSION   KCLA01001949
VERSION     KCLA01001949.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31634upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-5634"
BASE COUNT          238 a          179 c          194 g          317 t
ORIGIN      
        1 atttgatttg ttgaccttga tccccctctt ttgtgtgtaa cataacaaca tggaaataac
       61 actaataaac ctttaatgat agtcctggaa cattctttat acactatgta cttttttggt
      121 tcttaccatt tataacttgc tattcttttg aacaaagaca gctctttctt ttctctgctc
      181 tgctgtggtg tttccctatt tccatttgtg catttaggaa ggtgctgact aacatgtgtt
      241 aaaccaaaga tttaatttct ttttagagct gctataagta agcagggggt ggaggcagtg
      301 tcaccactta attcaaaggt taagtccttt gtctttagaa gcatttattt ctttggagca
      361 aaatgggcag aggatttaga gtattagtag aatcattata tcactgtcgt tggtcctggg
      421 gttgccaggc cttttctgat tatcagatgc aacaaatgac gtccaatttt attgaccagt
      481 ttggcttcaa cgatgagaag tttgctgatc aagatgacat cggcaagtga gtataacatt
      541 atgctggctt tgctacagtc ttgggaattg ccttcttact tggctgtgag aaatacaatc
      601 ctttcctgat gtgaggcagt tgccattcag tcctgtctat gtcatctctg ctcaccagta
      661 gaagccttgt cacacagttc agaggatagc aacagcatgt cttccttttc taatgtcatg
      721 gttgtaccaa catgacaaca cagtgcttat gactatctag aatgctgctg gggtcacttt
      781 ctctgtgcct caaagtgatg gttattccat gctgaatctg ggtgtcagag cagatgaata
      841 gcctaacttt taggatgaca ggaaacacct gtaagtgtgc tttcctctag gagacagtgg
      901 ggaagagcgt tgtaaatcta cctttcct
//
LOCUS       KCLA01001950             939 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31649upu ultra-conserved element locus uce-1762,
            sequence.
ACCESSION   KCLA01001950
VERSION     KCLA01001950.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>939
                     /note="ultra-conserved element locus uce-1762"
BASE COUNT          287 a          165 c          175 g          312 t
ORIGIN      
        1 agtgacctac acacactaga tacctgtata ctttttgttg cttgccaggt aaattaaaat
       61 tcacatttaa atttcagatg agccaaataa accatttctt tctgataaat agctggtttt
      121 gttccttttg tattatatta atgctaatat tatggagtgt tctgcactca tgctttactt
      181 cctgactatc tgataattgg gttggcagag tatacctggg gtcatcttgt ttagcttatc
      241 tgcacaccag aaagtgtggc aaataataag ggaaagcagc aataaaatag tgaaaaaaat
      301 tgaaaggaag atttaatctt tgaccaattt gaaacatatc ctagagaatc catggagaaa
      361 aagataaagt gtgactatga gtaagttaac taaacacatt acagtgtgtg agagcaaatg
      421 gagttagtcc attgtacatg tttaatttcc tattagtctc tggcgtttac tactccggtc
      481 tgagttgggg catctgtaaa ttcagttaaa tacagtgcat tgtctaaaca tatcacagct
      541 ccaatcagtc acccgggctg ctgataagaa gcctcttgta ttattgaatc tacaatgggg
      601 aggctctgca ggcaccaaga taacagctag gtatttcact ttaagtatga gaaaaaacag
      661 tgactcgcct ttgctgctac agctctgaca tttattacta ctccctgatt tgttttgtat
      721 tactgatgta aatttggttt caggtgcttt atatctcttc ctattcctaa cttaagaact
      781 catttggaag cagcaaggaa aaacaagtac accaaaatca gcttttgtag tattagactg
      841 caacaacttg agcactgtct agtgctttaa gaatgtctta gtgcttgcag ctctaatgaa
      901 tgaaactgaa gcttttgttt attctttcac cgttttgtt
//
LOCUS       KCLA01001951            1086 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31679upu ultra-conserved element locus uce-1732,
            sequence.
ACCESSION   KCLA01001951
VERSION     KCLA01001951.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31679upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1086
                     /note="ultra-conserved element locus uce-1732"
BASE COUNT          347 a          193 c          257 g          289 t
ORIGIN      
        1 gtctccagat cagacaatag gctacctttt ggagtaaggg ggctgagagg caagaggcac
       61 aggaaaacag aattaggagc tatgctgcaa acagatgaag caaaagctct ccaccagttg
      121 tgacccactg tcttcctttg cacacccact ggatgctcct gattcacggg gctagaagag
      181 acatgagcaa agtagaaaca atgacatttc gctactgtat gaattccctc tcccttcgct
      241 taatccaatt cttattgggg ccttctgctg aaagctgata attttgatgg cccctgaata
      301 aagccagtcg cttgaattcc tgccaccagc ccctttataa tgaatagggc taatgaatgc
      361 tagtaagtgg taggaatctg tgaccagctg catcaaggca ggtaatacag ctcagattta
      421 attgggagca ggtattggaa ggctgtatta ctttaattgg tgagggggtt ttctaaatgg
      481 aaaggacaaa gtataatgga caaattgtgc tgtacaatag cacttaagct gggattgtat
      541 gcatttgtta atctgttgag gaatgaggca attctaaaca attttctcag tgaaaccaac
      601 tccagaaatc ttgtcccttt tgttctccct tgggaaaatg caagattgaa acagaaaata
      661 cctttactga ggcaatcatt tgccacgtgt ggaaagcgga tacagctgta aactatgaaa
      721 gagggatctt tgtagtacaa taaaggatgg aaaaagagat aaagctgggg ataagagtgg
      781 gcctgtcact gcatccaaag gaggaataaa gtgatgacat ttacagtgac agatgagatt
      841 gtaaagagaa ctcgggacaa tttagagagg gaaatttgat atttaaaaga aagggctctg
      901 ataattaaaa gtagcattac attaaactgc taagcatgtc attagtgaca gaagggaact
      961 ggcgcctttt gaaaagttaa tgattcacac agacctgctc ttgaaacttt gtatgtagta
     1021 aagttcactt gaacacagca cactgtatgc aacacggcat aaattttctc tgtgtttcat
     1081 ggtggg
//
LOCUS       KCLA01001952            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31695upu ultra-conserved element locus uce-3982,
            sequence.
ACCESSION   KCLA01001952
VERSION     KCLA01001952.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31695upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-3982"
BASE COUNT          369 a          230 c          250 g          325 t
ORIGIN      
        1 cttgagggca gagaatgctt tattctgcat gactattatt tggagtaatt cctgaaaagt
       61 ttttataaat gtgctaagtc tgaaaatgtt ttgttttgtg tcagtcagtc ttaggccatt
      121 ttacacctct cattcagcac agctgaaatg caagcccaca aaagagcaca acattttcta
      181 gctaaatatt tatttgccac acttactttg taatggagtg tgtggaacat catatttaaa
      241 acatgacctt agaaacttaa aaacacatcc gtttctccca aagaatatac agctgccaga
      301 gaaaagggga cactcagtaa actgcatgtc actatcagct attgatagcc agtgatttgt
      361 tctgaatcca aaggctaaac caaacctcat gctgctgtat gtcagatgca attggtccaa
      421 agtcaaagtt ttacagctca gacagggtgc actttatcct tcaggctgct acttaagata
      481 gccatgaccc tgaggagaac cagtcaacaa aacagacaga caagaggatg tgatttgtat
      541 gcatccccga gctgctcaaa tcacctctga cctgcaggtc aggctgcaaa tgacagcaga
      601 gtgcatgcac ctgatcagac agcacattct cattagaaag cctgggaaaa gggggcagct
      661 acactgtgtt tactcataga ccaaatgcaa tctacccagg aaatgagaag aaaaaagatc
      721 aatttagctc aacagaagga tgtgagcaac atgtaagtat gttatgaaat tccaaatcaa
      781 actgcttatt cttataaacc cagatgggag ctctctgcct gagtgaggta ccaagaagag
      841 aggtttgcaa tgaaaaaggg atgtttgttt gctgcagaat gccatgccag gagtctttgc
      901 tgggatacat aacctctact ctaatagact gagatccaca gtcagaggca tttgtaggtt
      961 tgatttgttt ctggaactag ctgaacatca atgcagattg ctgatttgat agtcatatag
     1021 tcatcactgc taattcactt cagcagtgtg tatatttatc cagtagtgag gaccagattt
     1081 attcagcaga agggcagtgc tcacatggaa atccaggctt tcctaaattg ggttgtttgg
     1141 atatgggagc ttgtcaagtt atcagagaga tata
//
LOCUS       KCLA01001953             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31711upu ultra-conserved element locus uce-5709,
            sequence.
ACCESSION   KCLA01001953
VERSION     KCLA01001953.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31711upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-5709"
BASE COUNT          169 a          118 c          162 g          199 t
ORIGIN      
        1 ggtggggagg ggttaggggg tgttgagagg cgctgataca gtcgggtccc tttccttatt
       61 tccatggcct ttctgcggcg ctcagtcttt tgtgtcagct ttcagcgcgg cccggtttga
      121 gtggcagcct gtcacagatc agttcccacc taaagccgct tggcagggcg aggtgacggc
      181 ccaggaaggg atctaagtgg gtttatcagt gcttctttac gcctcgtgag ctccttgaca
      241 caaaaggaaa gggtattaaa gatctaaagc gagcccaaaa gcgtgaaagc tccttatagg
      301 ctgcgagatg cggatgtgac taaattttta aatattgtga gttgatgcta ttcattttgc
      361 caatagagta gaaagaattt ttgttacaga aatgagtgta tgttccactt gagtgcgatt
      421 tggaaaaggg aggaagtccc taaatatgtg cttggaatat tacaagtccc ctgtatttac
      481 aatcatgcat ctgttttgaa tatatataaa agcggacgta tttccttttt ttaaaaaacc
      541 caacacactc atttagcaca gacagtattc aattttctgc tactatcgct gaattgattt
      601 aggggttttg tgtttgttag ttaacagctt aaacgttaaa atgtagta
//
LOCUS       KCLA01001954             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31727upu ultra-conserved element locus uce-6316,
            sequence.
ACCESSION   KCLA01001954
VERSION     KCLA01001954.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31727upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-6316"
BASE COUNT          210 a          123 c          127 g          199 t
ORIGIN      
        1 cagtgggttt cattgatgca ggaggtgaca ttgggcagta attctgcggg acccctgagc
       61 cagagaggtc gacgctcatc ttggtggctt aagaaggtgg ttcataaaga ataagaaaag
      121 agtttgcttt gaaagaaacc tttctgaagg cctcgcagta aacaaaatct gtttgcctaa
      181 ggaaagcctg ccagcaatca gctagtaaca caagcgctgg tgctaatgaa cccaaagctg
      241 ttaatgtggt ttcttcagtt aaattgattc atgaattttg aagagaacat tatctaatga
      301 attttctttg aatagaaagc aattaaaagg acaaatcagt ctgattaacc ccaaagtcac
      361 cctactgcca caaatggtgt acagtttgaa attatatcat aaaaaactag agcagatttg
      421 ctatctcttt gccctctact aatccgtgta aattaatgaa caacaaagtt aatttctttg
      481 atgacccttt tctcgtatca cctggattat gctgatgttt catttgctta atgttagaat
      541 aaagactaaa cagatttttt caatggagtg attatcattc ccttcagtta agaagtgatt
      601 tttattattt aacacacaca cagcgctcgc tgggctccct ctaagaacaa aatcgcatt
//
LOCUS       KCLA01001955             610 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31742upu ultra-conserved element locus uce-6601,
            sequence.
ACCESSION   KCLA01001955
VERSION     KCLA01001955.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 610)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..610
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31742upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>610
                     /note="ultra-conserved element locus uce-6601"
BASE COUNT          194 a          120 c           92 g          204 t
ORIGIN      
        1 gggaacaaga atactggcac acttattctt tcttacacca aatcatccag tacagtttat
       61 caactgcttt atgactggca ctagtgcaca gattgaagaa tttaaagatt actatatata
      121 aatctagcaa ctgtattagg cataagctcc ctggccttct aacactaagc aaagctgtac
      181 tgacaataaa agtaaaccaa aaagacctga caacaattat tctgaacact tgctaaatgt
      241 catcattaaa gcactctcgt gattaaacaa agcagaagtg aggaaagaag acaagattgt
      301 gtttgcgcaa aaaactaaaa ctacaattag ttccaaaatt ttatacacgt taaatgtttt
      361 gttactattc tgttatcaaa caaactttaa attgtcttcc aatttgttcc tctcaacatg
      421 aacattttta aaaatttgct ttattgtatg tgtttttttc cccattttat ttatttctaa
      481 gaggagtctc agctgtttgg gacctgaggt tgatttgctt tgaggcttcg tagtgctctt
      541 cttgcagctg cagatttggc aatcctgtag cttctgccaa cacctttaaa ctttcccttt
      601 cctacaactt
//
LOCUS       KCLA01001956             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31758upu ultra-conserved element locus uce-5970,
            sequence.
ACCESSION   KCLA01001956
VERSION     KCLA01001956.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31758upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-5970"
BASE COUNT          117 a           83 c           70 g          118 t
ORIGIN      
        1 tgattgcaaa cattttaatg aggaaaaaaa gttgattgta aatgaggaaa atgtgctggg
       61 ctttctaagc tccgagttgg caacagcttg ttgagagtaa atcctctcat ggaaggtttt
      121 gctaatctga ataaattcaa tttcaaaatc cttccttgat ctaagcttgc ttaagctctc
      181 accaaggcct aaggaccctg agggtcaatt ccaataacaa aagataagaa aaatctgccc
      241 tttctcatat ctctttgcca tacactataa gctgttacct cactgcaaaa aatctttagg
      301 cttaatgaag ttgccttttg atacttttga aggatgaagt tcaatgtttc ccaccccctg
      361 catgtctgct ctgcatgcca cccaggac
//
LOCUS       KCLA01001957             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31788upu ultra-conserved element locus uce-6189,
            sequence.
ACCESSION   KCLA01001957
VERSION     KCLA01001957.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-6189"
BASE COUNT          271 a          139 c          152 g          245 t
ORIGIN      
        1 ttatgttatc attcaaaagt catttaatta aaaaagaaaa ataaaatcca ggccacatca
       61 ctatgggcaa caaaggctaa aacacattgt ttccagacaa atctccatca aagacatatg
      121 actggggact ctgaagtcag aatatcttca tatcttacat ttctgtgagc gctttcaagg
      181 aaagctggag tcttgctaca ggatttgcgg cttgcttccc actgctgatt gataacaaga
      241 agtagcatta gcagtatttt tcccccatcg ttcctctgaa gctgatggag tcaaggattt
      301 gttacttgat ctaatggcaa tagctttccg atagacatgc ccagaatcat tgattagttt
      361 gttctctcct tgtttgcatt ggaacactgt ttaatttaca ccaattaaag aatgcttgtt
      421 ttgtgtattg aagaataatt aaggagtgga attccctata ggctactaaa aatgacatct
      481 gactggaatg gtgattagag catgaaggca gcattagtat ttaactggtt tgactgctat
      541 ataaaatcat tacagcatct caccacgaga aagaacagta gttaattttg cctataacaa
      601 aattagttgt atgtatttgc ctggtcactc taagtaaatt tgacaaggct aatcgtaaag
      661 ccagcgttca aggtttggca gaaggagcag atagagcact gtttatagta atgatcttga
      721 tagatatgta tataatcttc aagcaataca caaatatgca caaatgaata gaggagattt
      781 gccagagacc ttcaaatcaa aattaaa
//
LOCUS       KCLA01001958             868 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31804upu ultra-conserved element locus uce-6329,
            sequence.
ACCESSION   KCLA01001958
VERSION     KCLA01001958.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31804upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>868
                     /note="ultra-conserved element locus uce-6329"
BASE COUNT          316 a          185 c          157 g          210 t
ORIGIN      
        1 caccccaaaa ccaccccaaa accaccccac aaccccacga ttatctagtg cttctcctat
       61 gtaaaaatgc aaactgcttc agatagaagc cactaaaatc tgtctgagta gtatagcata
      121 gagaatcctg ttgtctagca accaagtgca ccaagaataa ttcctgctta tattcagaga
      181 tgtataaatt tcttcatgcc agtgcacata cacacacaca cacacagaag cacatacctt
      241 ttgcccctct gagcacaaat ccaaatcctt cattgtcttt tttctgcagg accactgcct
      301 tttcttctat tatgcagtca ctgtagagag aattccgagg atagcgacca ttattacatc
      361 ccttcatcac cactgtagta gctgctcctc cagtgtgcag gttcatcatc atcacagccc
      421 gttaatcaaa taatattgca gtaaccaagc atgggaaaat agagaacaaa tagtagcgag
      481 gggaagacaa agactcagct tgatggtaaa agagaacatg acaaagcaac ttaaaaggaa
      541 tccaaaaggc agagaggaaa aagaaagcag aagaaatcat gcatggtggt ttgtgttcta
      601 tatgaatgac tgaatgaaca tgtgatcatg taatctgtgg gctagctagg actctaaaag
      661 gaaaaaaagt aagtgaactg aatgacagta tcattaataa actcctcaat cgtggatgta
      721 ccagatgcat cttctagtga agccaaaatg aaaccaacca gaagaaaaat gaggcagcat
      781 tttaaattta aagataagaa attatgattt tctagtagct aactaaaagg cacaaataga
      841 ttcggaaagc tatgccttgc atcaaaag
//
LOCUS       KCLA01001959             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31818upu ultra-conserved element locus uce-962,
            sequence.
ACCESSION   KCLA01001959
VERSION     KCLA01001959.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31818upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-962"
BASE COUNT          217 a          160 c          173 g          272 t
ORIGIN      
        1 ttttttcaaa agggaacaca aaaagctgtt gattgaaaag taggtgcatt tctttaatgg
       61 tgtttgtata agaaacatta tgttgttttt tctgaaggta gttatttcaa agccacataa
      121 gagaaatttg caaaatttca agataaaagc attttctacc aaaagcagaa aaggaaaaca
      181 tcagctcttc ttttattttt tttcctctta aatcagtgac aagttacaag tttgctagca
      241 ctaacagaaa ctgtattcca tgatctaggg attgtgttaa ttaatgtggc tctcatctgt
      301 tggaggtgtc gctcttcatt agcctgtatt ttacacactg ccgtgcttca tttttggaat
      361 gaggtggtga ggggataacc tagccagcca tccttgtttg atctctgtga tacattcgca
      421 atgcagaatg cctcagctct cttggttccc tgccctgtcc tgctaatccc agctgagctc
      481 attatggtgt agccttgctg ctactcctgg agccagagct gtccaagcta attactggta
      541 gcagcagagc tgcctgttaa gggtctggtt tggatctgct aacatggtcc ttggtagtga
      601 cctgcaaaaa gcacgaggga gttgctcgct ttcttgctgt gcacagcctg tcctttgggt
      661 ttaatgctga tcccttcaca cagctctttt agctgtagta agtgtaaaag ttggtgaagg
      721 aaactcttac tttggaaaac atacagtttg cttctttgat ctcataattc ataggctatt
      781 atactcagcc aggcaaagta agaaaatgtc cttttatact ag
//
LOCUS       KCLA01001960             289 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31832upu ultra-conserved element locus uce-7167,
            sequence.
ACCESSION   KCLA01001960
VERSION     KCLA01001960.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 289)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 289)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..289
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31832upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>289
                     /note="ultra-conserved element locus uce-7167"
BASE COUNT           92 a           55 c           61 g           81 t
ORIGIN      
        1 gttgtaaaat gggctataag aatcaaatga aatatgtgtt ggtcttacct ttctatgttt
       61 ctagactctc tgaccccaga gatagaagct gaccgcagcg ggggcagaac agatgctgaa
      121 aggacaatac aaggtaggaa tttgcaaaag gctataaatc tagatcttgc tatatgagtt
      181 tttcctcagc tttagactgc tattcaagca tgtagcctac catctgggcc acatcaaaac
      241 aagttcaaac aaggtcaagt tcatcttgct tgtttataag agagactac
//
LOCUS       KCLA01001961             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31847upu ultra-conserved element locus uce-4992,
            sequence.
ACCESSION   KCLA01001961
VERSION     KCLA01001961.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-4992"
BASE COUNT          182 a          176 c          153 g          176 t
ORIGIN      
        1 agtccaccag cgaagcgcct cacaataaaa gacagcaaaa cccttattcg ctgccgcttg
       61 ttgtctcatg agaaacgagg gtcatactgg gaaaagctcc ggtttctctc cttcgtatct
      121 tgttcaaacg gggaacccgc tccacgtttc tgttccccag gtctgcgtga caaagcagaa
      181 ctggaaacgc tgcttgccct caaagtctgg agtccaaaac aactgcttgc cactgaaata
      241 aaggtaggcc tttcctaggg aacccatgag ctcaagcagg gatgcagagc cagtccttgc
      301 caataacttt aacttcattt atctgcattt ggcaaaaacc gtgctgcagc tggggatgaa
      361 atgctgagct aaatagctgc ggcgacgtga gctccagagc agcaattact gagccttgct
      421 gcctgtggaa gagtttactt ctatttattg tatttaaagc cagtcttcag ctacgtacgg
      481 tgcaacaagg actgtctgat ctaacaaagc ctgactgcag agcgccccag ccctgctgcc
      541 catatggcta cacgtttcct aaggccaacc agtgctttga agccaaactg aagcagtatg
      601 cgtggtcatt tgaccattct acattccttt tcttgtctca aatggcaagg aatagttgat
      661 ttaaaaccta aacttggact gtcattt
//
LOCUS       KCLA01001962             394 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31863upu ultra-conserved element locus uce-4779,
            sequence.
ACCESSION   KCLA01001962
VERSION     KCLA01001962.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 394)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..394
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>394
                     /note="ultra-conserved element locus uce-4779"
BASE COUNT          139 a           66 c           65 g          124 t
ORIGIN      
        1 aaactaaata ttttgagttt acagtgactc ctgtgtgaaa cccttcaaga tgactgctga
       61 aaaaacccat atccccaaca gattattaaa attgcaaatt cagttttcca ttaatatttt
      121 ccatgttggc atcttgaaaa gagtggaagt tgatttcagc agaagatcct gtggggaaat
      181 tggttcattt tgctaaagta tcttaataat tacagtgaca tcaaggttaa ttgcttaatc
      241 tgtattgcca tagtgcagtc ctgtccaaat ccctacacaa tctgctttat aattagtgcc
      301 aggatatcca tacagagaac aagctgtaac ctaaataaat aaaaagaaaa gagcagattt
      361 tattaataaa taagactcac aaatgtgtgt ttgt
//
LOCUS       KCLA01001963             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31878upu ultra-conserved element locus uce-3328,
            sequence.
ACCESSION   KCLA01001963
VERSION     KCLA01001963.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-3328"
BASE COUNT          194 a           93 c          136 g          169 t
ORIGIN      
        1 tgaagactaa gctgagtcaa cgcaactcac tgcatccaaa atacattgtc atgttggtgt
       61 ttctctcctg aaatgttaag aggtgaaatg ctactgcttt tatccagcgt gccacccagg
      121 catctgagcg gctcctttcc taaagcaaat gacattgaga tactggagag agataaactg
      181 aaaagtcagt tcattttttc ttctctagaa atgatttggt ttttgaagta aattgaccat
      241 aaaaagtaag gaaggagaag aaaaatgtga aaatttatct agcactttaa gtttatgtca
      301 gagagaaagc aaatggcaat agactataaa ggaatctaat ccgtaaagga agaggaaaag
      361 gttagagaag tcaacagtaa ttaaatggtg attgaagctg aaagaaaatt gatctgtgtt
      421 agctgaaggc catgcttgcc ttttgggatg ttatgcttcg gtgaagaggg aaaagaaagg
      481 gttttcttgt tttgatatgg aaataaacat cacatcttct tagcctatgg tgctgtgaat
      541 caggactgca ccaagtttct gggttctctc caggtctcac tgaatggcag ca
//
LOCUS       KCLA01001964            1109 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31894upu ultra-conserved element locus uce-318,
            sequence.
ACCESSION   KCLA01001964
VERSION     KCLA01001964.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1109
                     /note="ultra-conserved element locus uce-318"
BASE COUNT          346 a          214 c          217 g          332 t
ORIGIN      
        1 acatagatgc catctctagc tacttccctt ctggttctca aacaccagtt aagctgagac
       61 catctgaaat cattccactt acgagctagc aaatttctac cgtgatagtt tcagtcagag
      121 ttaagaggca aggcagaggt aaaagtcact gtagcaatga ggtgcattaa tctacagtgt
      181 cagtctgtct tcatgttgct tccttatccc tgcagcttga tagataattc atttatatgc
      241 aataggagaa atttactttg cttcgtgcag cacatttaca aatgcatcat aaaggaatag
      301 tttttaaaaa gcttattgct gctttgaaaa aatacccagg acttggcttt ctccttttga
      361 taccattttc tctgtgatgt aactgagtga ttttgcagca gaaagctcca aaaattaaac
      421 ctgaactttc caaatagctt cctaataacc gttgcccaaa tcaatggggc tccatgaata
      481 ttttgacaca gtttaaatgg gtttgtatcc tcaccattga gatctggtga tttagcctgt
      541 caggttgcaa atgtggaaat atcacctctc actgagcaaa gtccaatatc tcattagaaa
      601 tgaaaataga agagaaggga agcacaaatg ctgtcagtgg cagtgaggaa agaaattaaa
      661 cctccggagg cctgtatatc ttatacaaaa gattatgcac tgccaggctg tataaatcat
      721 gccaaggctc tggggctgca atgggctaga aaataaaaaa ccataaaagt gtcatattga
      781 aatacagtca ctgagaattc ttttatgatg agtctaaatt cgcctgacat tctcgcaaat
      841 tcaggggcct gcttggattg tttataccca gacttttgct gtcagtcacg aagtcccagt
      901 ttccacagca aattattcta aacagggctt attatcaagg cataaaaaag tttaaacaca
      961 gatggctgga gagttcctgt ttaatttaaa tgccctgtgg cccacatcaa tgtgagactg
     1021 tctggtccta gatttactat caataaattg gctgcactta ttagatagca gagttttaag
     1081 atgatggttg ggagtatttc caatagaat
//
LOCUS       KCLA01001965             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31910upu ultra-conserved element locus uce-7983,
            sequence.
ACCESSION   KCLA01001965
VERSION     KCLA01001965.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31910upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-7983"
BASE COUNT          150 a          116 c          112 g          125 t
ORIGIN      
        1 ccaggcgagc cagcatcttt aggaagagcg cttggagctc ccacagttta ctgcggggaa
       61 gtaacgggct ggcattctgc agcctgtctc cacccattgc attccttgtg atttttcaat
      121 tgcaaactcc aaggcccagt tatttcatta attcagcaca caagtagtga ggcttttctc
      181 tcacatcttt cagtctcctt ttagcaaatt atcccatgac ggaggattta ttcagtcaaa
      241 gacctcggac tttgagaggc aacaaaagaa tcaagagact ttctggtcca cctgcctggc
      301 gaatgatgag gcagggtaaa gcctccccta gagaaaccaa tcaaaccatt gtgtggcaca
      361 gtcagacctt ttcaactgtc aagccaggag agcaggaaaa gagatgaaag aactcaggat
      421 gaagctacca tttacagaac catgtgggaa tggtctcaga agatttaata attgggatgg
      481 aactcaactt tctgaaaact aaa
//
LOCUS       KCLA01001966             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31925upu ultra-conserved element locus uce-4078,
            sequence.
ACCESSION   KCLA01001966
VERSION     KCLA01001966.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31925upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-4078"
BASE COUNT          250 a          129 c          151 g          200 t
ORIGIN      
        1 ggaagaaaaa taaaaaaaaa cacaccaaaa aaagacgcaa aaatgtgaaa gccattaaaa
       61 aacgctgttt aaacttaaga ataaatgcag cggcatagtc acattcttta aaagctttgc
      121 tgcgctcaga atggctttgt tattagtgat tcttaatgca tgagatagtg gtttggaata
      181 aatctttaag taattcaaaa caaggactct tcagtaaata gttgaaatta aaggaggagt
      241 tagagtcatc tggtttccat taggatgata aaatagttca cttgaaacct tttacaagat
      301 gctttgttac tgggaggtgt ctgtgcatct cactccatca ccagccattt gacacaacat
      361 aaaaggcttc aaaagccatc ctaggcctct taatcaaaaa ctaattgtaa tagatattgg
      421 ggagtgttaa cacagtgacc gcttggttgt atcttcggta tataagcagg agtgaacatt
      481 aaacacaacc ccgagttgat agggcttatc agaatttcag agttaagtgc taagtactgc
      541 agccccatat ctctgggccg ttgctttgta ccacttttgg agttaattgc actgtaggac
      601 ttcatcttcc caacaaaatt tatagcatcg ccagagaaat tggaaaccca ctgaagaaac
      661 tgctgcagtt tacaggggtt cagtgaaaca gcagggaaaa aaaacctgtg gtttctagga
      721 agaggggttc
//
LOCUS       KCLA01001967             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31940upu ultra-conserved element locus uce-5446,
            sequence.
ACCESSION   KCLA01001967
VERSION     KCLA01001967.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31940upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-5446"
BASE COUNT          223 a          180 c          183 g          258 t
ORIGIN      
        1 atcacagcag cccaggcttc ccttgagtgt tccccaccag ccccgttgat gagaacaagg
       61 tgcagcatag cccctctcct tgttggctcc tctgctcctt ggaggtggaa gcttatcagc
      121 accctcagga atctcctgtg ttgcttatgc cctgctttat tgtcgatatc agaggggtgg
      181 ttacagttcc ctcgtgagga ccatgcactt aatacaggtg atgaagcaga gattaataat
      241 aaccatctct ctgcttttgc cacctctgga tttcaagctc acggggagga gatacggagt
      301 tttccgtcca gtgtcagtgc taaagctgct gcctgtaaac ccaacaaaag gacggtgcct
      361 ctttaacagg gactactgtt tgtgctccgt ggagctttgc agtattagta aagcagcatg
      421 aaagagttga ttttcatttt atgttgtgct tgtgaggcat taacatgatg ttctaacact
      481 tgtaaatgaa tacagctctt gcctaatctg tcattttaat gccttataga ttttatttca
      541 ctctgtgttg taccagattc tcaataataa taatcaactg ctttgttgtt ctcccacaga
      601 aattaaattt ctgtggtgag tgtgcaacta ataaaagatg ttgcttgagg aaacaaaaaa
      661 taaatatgat gaatcataaa agttgtatat ggggggttgc tcatatatga aagacaatta
      721 ctgaaccagt ggtaaattca tctgattctc atattgtcaa cagcttaata actctcacaa
      781 agggtttaag catcgtggtt ttgcctgcgt gaaccccgca gacgctgacg cgtgtacgag
      841 ctct
//
LOCUS       KCLA01001968            1024 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31956upu ultra-conserved element locus uce-6923,
            sequence.
ACCESSION   KCLA01001968
VERSION     KCLA01001968.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1024
                     /note="ultra-conserved element locus uce-6923"
BASE COUNT          321 a          238 c          199 g          266 t
ORIGIN      
        1 atgtgaatag aagaactgag ttgatctacc caggatctcc caggaacatt tcacacactc
       61 ctctctaata gagtggcagc agcagaaggg gcagaaaact atgggatgca gctacacacc
      121 cgaagaaagt atctttgaaa cctgaatgaa ggctgtgttt tccttgacag agcaagcacc
      181 cccagctgca gattttaagg cattttctgc agagaaacat cagttctctg cctcactgga
      241 ggctgccttg ctgcagcctt ttccgcacag aacctgtctg caatcataaa gcagccagag
      301 aggggctctg gtggttttat tttccaaact gcctaaaaga agaacaaaga acccactcgt
      361 caaaacttag ttaccagtga tcaataagga gcagacagag ataagttttc ctaatggctt
      421 cttttttaaa gatgtgtatg atgctgtatg cgaggtaaca acttctttag gaacatcaca
      481 gcaagagaca ctggttcatg taaggttcac ctattacact gccctccagc cagctggagg
      541 ctaaccagtc tgataaccct acaccaccac agcacaggcc caatgatttt tacatcaagc
      601 agcctgatgt actgctctgc catctaccaa tcccttttca atattgatcc attcctaaat
      661 gagccttccc tgctttgtac catgagcaat aattaaaaaa gcagcacatt gattttaact
      721 aatattatga aggatctgga tgtgcacatg cttacaaaat agcggacttt acccatcatt
      781 catagcacaa caaaggatcc tgattaaagt ttggacacag ggaaagagaa atgggtctgc
      841 aattgaacgt gtcaaaactt atccctgttc tggtttatta taaatcttgt ttcggcaccc
      901 agggaccaag tcttataatt ttcattaaaa taaattagag gatgcagaag cctgaggtga
      961 atacagtgga agcaactgaa aaatgctcct taaaaagaac attaccctcc cctctctatc
     1021 ccac
//
LOCUS       KCLA01001969             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31971upu ultra-conserved element locus uce-424,
            sequence.
ACCESSION   KCLA01001969
VERSION     KCLA01001969.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31971upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-424"
BASE COUNT          230 a          162 c          178 g          228 t
ORIGIN      
        1 cagcagatgc agtttagggc aggtgtttca aaaaagaaca ctttctcttt tttactggta
       61 gccagagtgt tttgagagag tgactaagca caggcctgga gattatgaaa tttgcttaag
      121 tgttaatggg ttgattgctg agttacagcc tgtcgtcttt actggaaatt gattgactgg
      181 tgctgcaggt cttcacactt gatgctcgga tttgactcga aaattctgcc aagtctttta
      241 ctctgaaatt tatcttaatt agatctgaaa gacctgccac agcagaatag tcacaccgat
      301 taaaatgaaa aacaggagaa attactgatc aaattaatca taatgtcggg ttacagctgt
      361 aggtctgatg taatttgcca ctccagtgag ttacatcggc ccaggcacaa gaaagagagc
      421 tggttttacg ctgatccgta acaccaggca gcttcgggca gcccatcagg acgtttattc
      481 cattcattct cttggcttat tctgacctta gtgctgcaac tagaaacaaa ttaagcaaaa
      541 ggaaaaaact ccttttatcc aagaggttgt gccggaaacg tgagcttccc aaacccttct
      601 tggttttttc cccccttttc tccaccaacc ttctactttg gtttgaagta accatcaatt
      661 aattatgtgg aaattgaaaa atggaaggtc aggggttgcc atctcaagca tgggagcttg
      721 tggcgagtca ggatgcgagc aaattaggat cgcttaagca gtagcagtac atgagaacac
      781 gtaccctaac agctagga
//
LOCUS       KCLA01001970             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 31987upu ultra-conserved element locus uce-1976,
            sequence.
ACCESSION   KCLA01001970
VERSION     KCLA01001970.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="31987upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-1976"
BASE COUNT          261 a          149 c          159 g          216 t
ORIGIN      
        1 gaagctgatc tcagtaactg aaaaatcagt ttccatatgg tcatcaatgg aggaatgtgt
       61 acctttcatg ggatcattaa accaccgcag cagtgctatt taagatgaaa tcttttaaaa
      121 tcatggaaat ccacaaaggt tctaaattgg tacccccata tttctcccat attacgggga
      181 gcttttcgca aataaatcaa aggcttttca ttagtaaaag ccagtcctgt tcttcataaa
      241 ataagcttga ccactaccga ttgtaaagaa cccttaaagc tgggcacctg cagaacataa
      301 cccaacttct cacctgctgt gctgtgttca tggcaccctg cctggaggta agctctgcgg
      361 ggattggtag gctccatgcc tcctcaatac taggaagtaa tttagtttta ctctgtagac
      421 taccttgtgg aaggttacac aactgagcct aggaaaaatt atgtagaaag caaatttaac
      481 acaagcctac tttagtaaga gcaagtccac gaattcttcc taaatgccgt agctaattat
      541 gtcttaagga aaggacagat ttaaaatttg gggttttaga aaggtgctaa gtataaagag
      601 ggtaaccaga atataaacct ttgtgagaat cagaacaaag atgagctctg gattcagagg
      661 tctcataact ccttttttct gaaactgcaa acgagagtga aagatagtgt gtgcattctc
      721 tatgctatga gaacttaaaa atgtagacga tacaaagaaa aaagcacagt gatgtgaaac
      781 ggtat
//
LOCUS       KCLA01001971             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32003upu ultra-conserved element locus uce-4511,
            sequence.
ACCESSION   KCLA01001971
VERSION     KCLA01001971.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32003upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-4511"
BASE COUNT          227 a          176 c          204 g          200 t
ORIGIN      
        1 aagtatgtca cagccatgcc aggcaattcc ctgagcagtg aactccacat aacgtcgggg
       61 ttaacagtgc ctcacagtat ggtcccctgt agcctggcca gtgtgagagg aaaagaaaca
      121 cctttggaaa gcaaattgtg ctcagaggca ggaagagctt ttgcagggtt tagtcctctt
      181 gcagtcgtta ctttatttta actatatgtt ttctttttcc ctaatgggaa ttaacgcagc
      241 gatccagagc agccctgcag aggtacctgt tctactgcaa ccgctacatg aaccacatgc
      301 agagcctgcg ctttgagcac aagctctatg ctcaagtgaa gcagaaaatg gaggagatgc
      361 agcagcacaa catgtcatgg atcgaggtgc agttcctgaa gaaagcagtt gacgtcctct
      421 gccagtgtcg tgccacactc atgtacacat acgtctttgc cttctacctc aaaaagaata
      481 atcagtccat tatctttgag gtaggagaaa ccacagttgc caggagacca gattagaatg
      541 tgaagcagaa gtttagtggt tgaagaagct cttgttccca gttttaccaa agttaattca
      601 tcgtgatatt ctgttgtaca aaggttggaa gcctgccagg ctttgaacag ccggaggagg
      661 aggtacagca tgctgccctc tgaaacaaga aaggggatga ggttctgcct tgaacaggca
      721 aagcaggcat tcaagcttaa atcgaggcac tactgttaaa atttgaagct gtagtggctg
      781 tgtgtgatgg agagcagcct tcagcag
//
LOCUS       KCLA01001972             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32018upu ultra-conserved element locus uce-3333,
            sequence.
ACCESSION   KCLA01001972
VERSION     KCLA01001972.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32018upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-3333"
BASE COUNT          212 a          137 c          142 g          266 t
ORIGIN      
        1 tattttcttg tgaaaatata ctatttttgt ctcatttcca tgagggaggt gctgctttgt
       61 gatatgtatt cttctctgaa aaattagtta ttatacatgc aaacatgtat tttcttaccc
      121 atgctcactg tgtatctcta gacccatctt tatatcaccc gcttttatag tagagatcct
      181 gcgtattcag tttatatatg tcagatcctc aagggccatg gcttttgcca gatgaagccc
      241 tttgattttg acgctgatga aacacggtac tgttattgat ctgtgcatga cacagcctgt
      301 ctctctgctg gcagagtgta gcaacattta tccaggaatt tatgaaatgt cactcagatc
      361 atgttcataa ggtaaactgt gcaaaaacca ggatccaagc tgagaatcca tgacgaattg
      421 gatgtgactc ttatcccttt gtcctatctt gtaggtgatc caagaggtat tcgttaaaaa
      481 aagtctatgt tttgtattag atgttgaagg aagaatgctt atcactagaa gcaccctgta
      541 caatatagtc ataccgttgt cctactcatt tttaggtcac ttgggagaac tatattttaa
      601 gtcaatgaaa gtgagttaaa tgttgtaagc tgaccatatc tgtttgtaac aaaatgatgg
      661 ttcctgtaca gctccaaaca agaaatcgtg tttatgtttt ctaaagaatt taacttttct
      721 tgctgcactt tgcctttaga gaaatatgtg cttgaca
//
LOCUS       KCLA01001973            1033 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32033upu ultra-conserved element locus uce-5286,
            sequence.
ACCESSION   KCLA01001973
VERSION     KCLA01001973.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1033
                     /note="ultra-conserved element locus uce-5286"
BASE COUNT          322 a          221 c          257 g          233 t
ORIGIN      
        1 tgcctgtgca tggctgggga catcgtttgc cctaaggaaa cactagatat cagaagttaa
       61 aacatgaaga agccaactgc ccgctgtgct cacctgcaca atgccaagag gcaggtctgc
      121 agctacagcc tgatacagag gcagaggcat caaaacagca gtcaacccag gaaacagctc
      181 tacgtgaagc ttagtgtttc cctccttaga gacaatctgc aactctctga accactgacc
      241 ttgatggatg agtgggtctt aggaaaacat ttctaatgcc tgtgctgagt ggtatttctt
      301 agataactgg tggtggtttg tgtttgtccc agtgccctag gctctgagat aatgctgctt
      361 tgctttgtta gtgaaagcgt ttaatgaaag gacttgagaa gacaaactca gacacaagag
      421 acaaacggta attctccgta agcttgaaca gacaccgaga acaacaccag ctgccatgtt
      481 tgtacctact ttgtagggct gcaggtatgc aaggccttca aatgaggctt ccaggtagca
      541 atggaaaccg atttctcatc agccgcataa ctgcgccaca cacactgcgt gcaggataga
      601 tggtaaaaaa aacaaaacaa ggcaaggggg agcgggggat gaaacaaaaa cgaaaaagct
      661 gattagtaac taatacaagt catggctttc ttctctcatt catagcacag atacatgcct
      721 gaggggagga agaatacttt cataatatcg ccacgtggct gccaggtttg ttcggctggt
      781 gctggtagaa taaaatcgcc aagaagcctg gaacggggaa acaatagaaa agcacaaagg
      841 aacgaagaac atgaagtggc agtgccatca cactgattgt ggtgagagag gactttgctc
      901 agatcaggat gtgctccaat aggttcgtta aggaagcacc tgtaaaaacc tgccaaaact
      961 gttgtcagtc acagtacagt ttacacggtc aagtaagatc tatgggcttc atggaagcac
     1021 cagaagatac tca
//
LOCUS       KCLA01001974             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32049upu ultra-conserved element locus uce-6464,
            sequence.
ACCESSION   KCLA01001974
VERSION     KCLA01001974.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-6464"
BASE COUNT          201 a          250 c          241 g          208 t
ORIGIN      
        1 gctgtgaaat gctgctggtc tgatgtgtca atgtcgtaca cctcctctcc aaagtgcaaa
       61 taactcccta ggctgtgagc cagggggacg agcccgtggt gagccagggg ctccaaatga
      121 gctggcttca cagccagtta gagcaatggg tgacgcacat gttacaggtt tctcacagac
      181 agcagcactg ggggagacgg acaccccact gtgtggctgt gggtcagaca gcagccccag
      241 cattacccag tggcagacag acgtctgcgt ggagctcggt ggcatcgctc accctgtctg
      301 tccctgctga gggtgggggg gatgcagccc ccgcctccca attttcctca ttacctgctc
      361 taagctcccc tcaaagataa gtgcttcttg tgcaaagctg ctaatttagt cccagcaaag
      421 agggggagaa gtctggatag aaaaggctgg tgggattttg acaagatgca tgtagaggtt
      481 gggcgactag tcttaattag gccatctttg tttacattcg atgtttatca gctaattggc
      541 atggcaaggt gtgagtcaca cagcttccct ctggcatcaa atcagttcgc aggaataaaa
      601 ctgggagaac aaatgatccc aattataaga aaacccactg tgctaattac catcccacgg
      661 atgatggagc ctcccacccg cggccttgtg cagccgccct gcctgccgtt gccccgcaca
      721 gctctggcat gttctgccgt gcccagcccc tcactgggtc ctttctcttt tcccccattt
      781 agtttggcag aggcagtgcc gcagcagcag cctgtaggaa acatctcgtc ctcccaacat
      841 cgtgatgccc atcaaatcaa agcctggatc gttgctgcgg tggaactgca gtgggacctc
//
LOCUS       KCLA01001975            1103 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32065upu ultra-conserved element locus uce-4915,
            sequence.
ACCESSION   KCLA01001975
VERSION     KCLA01001975.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1103)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1103)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1103
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32065upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1103
                     /note="ultra-conserved element locus uce-4915"
BASE COUNT          331 a          235 c          210 g          327 t
ORIGIN      
        1 aaggctcgtg actttgctgc agcacatttc tcaacattaa actcctccag ctccctgttg
       61 atacaaataa ccaaatttta ttaccctcct ttgtattgcc tgactcccta accctgtagt
      121 ttatggttag tccaacgttt gcatttccat cagaagacat ttctcagcta acattagatt
      181 caagtctttt agagctgctg ataaagagaa accctgaaga aatcctgaag ggtggaaccg
      241 gggatactaa gagcacagga gcaataatct tgttccctag caaacatgat caaaatgata
      301 gatcttgcca aaactgtcag ttgcccaatt tttgttctta ccagagttat agggtttcct
      361 tcgctccctt taattactca gaccttactc aaggaacgtg gttcaaacaa acaaacataa
      421 ataaaaaagt tacaacaacg tagcatgatc ttgacataca agacgtcaga accattataa
      481 acccctttat tccagaatga tgtcttttgt gcttagaggc atgcttgcta ttcatagatc
      541 tactgctcag ctgttccagt ttttagttct gcataaatgc ccactcatta tgtccagagg
      601 gttttgcctg tagctttgtg tttgtagcct tgaggcaaat gtcttgatgg cttagggaac
      661 tcgtagcgaa tgaccaaata acatcggatt ttccacagca acgaagccat tatgggacag
      721 catttctatg taacagcacc cttcagtgtg caatcattat aactaaggat ttaaccaggc
      781 tctggggaca taaaatcact ttgaagccaa aaatccacag tgaaatctta agcattggat
      841 ttctgaaatg cttctcagaa ctgcttcagt caggcagctt tgtcacttac agtaaaacca
      901 agtgaaggag aaggagtttt atgcacatct tatgaatcta agtattcagc tctgtgcatg
      961 cagagctggg agtgcagtgt gtgctggttg cacacagaag ttttttgcag ttgtgctgag
     1021 ctatcatcag cacacacaca aatcctggcc aacgtgaaaa catctaagta gagaagtttt
     1081 gctattgtta aaatttctaa gta
//
LOCUS       KCLA01001976            1090 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32080upu ultra-conserved element locus uce-4982,
            sequence.
ACCESSION   KCLA01001976
VERSION     KCLA01001976.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32080upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1090
                     /note="ultra-conserved element locus uce-4982"
BASE COUNT          329 a          201 c          210 g          350 t
ORIGIN      
        1 aaagcaagca tctagataat gaaatcgtat ctatggagtc ctcaaaataa tgcagaagtt
       61 ctatatgagt taattgtgca tcaagcatac aggcaaagaa acatgatgta atgcctttaa
      121 aatagcacat tagtcttatt ttttagtagc agacctttac ctacaccttc caggtaatta
      181 cctctaacaa acaccagtat gactgagggc attcaggatt gtcagccaca tgaaatccaa
      241 gaagtcacag agactcagaa attaaaaagc tgtttgattg ctaagcaata cgaaaatagt
      301 tattacctag gatgcatcaa aatgtatgga aaagcctttt cagatttaca gagatgtaga
      361 gtggaaactt tcacagatga agcagctaag caaatggtta taaggctgtg gatgtaactg
      421 ttcttttaaa tatatctgtg ttcctgtgat agtgttgtgt tgttaatgaa ccttgtgtct
      481 tatttcagag agattccccc tccacatcca gacagtcccc agctaatggt catagcagca
      541 ctaacaattc tgtttcggta agatttccag ttccacacag agaaagtgtg aaagctttgt
      601 tggtgctcat ctgccattac tgttatactt atcgtgtggt cagtgggaaa ttttgtcctg
      661 ccgatagaac caagtttctt acatatgtaa ctccccgttt tcttttcttg agtttttttt
      721 ccagcataat cttctcatta aaaccctgac aatgagttaa atgttaataa ttgtaatgtg
      781 acacttcagt catccttcag tcacttttag cagtttcctc aaaactaaga gaaggtttaa
      841 tttccatctt ggactttgga agcaatgttt gaagtaagaa taactgtgca gttggtgttt
      901 caagacattt tagcctcttt agttttgcat tttgagacct ctggaacatg tactggtttc
      961 cgctatctga gttaacgaat tggtgtgccc tctgctgttg tggtacgtgc acatactttg
     1021 tgaaatatga gtcttgcctg gatatgaaaa gcaaaaggaa gtggctttaa actgcactac
     1081 aaaccaagct
//
LOCUS       KCLA01001977            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32108upu ultra-conserved element locus uce-5391,
            sequence.
ACCESSION   KCLA01001977
VERSION     KCLA01001977.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-5391"
BASE COUNT          371 a          239 c          216 g          348 t
ORIGIN      
        1 aattctctta ggaatcttgc tttgttgata tgataaaaga aaagcctggc agtgatgtgg
       61 cacaaaatca aaataactct acaaatcatg cattttccac aggatttcaa aatcaaaata
      121 actctacgat cataattttc acttgcacac agcaaaatca tgacaccttt cccctaagat
      181 catgataatt tatgtatgag acacggcatt gctgcattga ggagaaactc tggtctggga
      241 aagggaaaga aaaaggagaa tcatcctgtt ttcatctcct caaataaatg ctgttctcgt
      301 gaatctctga aacgccagtc tgtgccgtgg aattgaatgg gaagtctcct gggtgaagag
      361 ctatccagcg aatcccttgc agcactgata attatgccat tctgactgct tacttaatct
      421 atttgaatcc agaggtgagt taagccactt cctgaccatt aaagtaaact acatgggtaa
      481 atactgctgt cactaagggg tgtgatgaag cttaactaca ccaacatctt aacctcagct
      541 cggtgcaacc ccagctattc catcacagtt cataaatgcg attgcaggtc catcttttga
      601 ttcagcaatt taataacttc gagtgctgtc agtactgctt tgaaaaatgg ctcctataaa
      661 atgtaacagc ctcaatcaga ttgtaaaaga ttcacccact gaagattctt ccatttcaac
      721 tataatgaat taatgttgag ctgtgtagaa gttcaagtgt catttaaact aatgtgaatc
      781 tactgtaact ttaaatttta actggactat gaccaagaat ttactgggaa catcaacttc
      841 aattttcatg atttttcacg gtaaatacga attacagatt ttactggttt tcttttgttt
      901 taccagtgga aagccaagta gggaagatag aaaacaacgt gctttgaggc ttagctgcta
      961 tttcagccct ggaacagtgc tcttctataa tgcagccctt ccatccaaca caacatttgc
     1021 aggaattttt atgtatttaa ggaacatgcc atattattgg actgtatgta gcaacaaatc
     1081 acgttgtccc actaaatcca gccagcttct caccccctct taaaaacagg taaggagaag
     1141 ggtaagtgtt ggctgacatg gcaaacatga gctg
//
LOCUS       KCLA01001978             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32124upu ultra-conserved element locus uce-3741,
            sequence.
ACCESSION   KCLA01001978
VERSION     KCLA01001978.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-3741"
BASE COUNT          192 a          130 c          123 g          163 t
ORIGIN      
        1 agaaaaggag gacaaatgga tccttgtagt ggttccccca ttatcaaacc tgtcttttcc
       61 ttcatcacgt tagagacatg agttacactt gcaaaatata taaggaaaaa tatagggtta
      121 cttgatgacg atatagtact gcagcctgac agctgtctgc aaatattttc accatgatta
      181 tctgtactaa aagtaaacca ctgggtaaag atagctcaaa cgtgacaagg ctcaaatagg
      241 atgcaaccaa cgctatcctg aatacttctg gctacatatg gaaaaaagag aggtttggga
      301 ttacgattgt tccccccagg ccctcctcca caactgtaag accaagcagc aaagtgggta
      361 ctttccttcc gtgcagattt cgttaggaga ctggctttgg gaattagtga ggtagaagtg
      421 aatcaacttt gtttgggaat gagacataaa agcagcagat ttccccttcc aagtactgca
      481 ccaaacaata aatagtacaa aacaacctcc gttccttgta atcggtctaa atcctctctg
      541 tggactgcgt gttgtctacc aaccagcaaa cgtttttgcc ttttaaaaac ttacgagcac
      601 gatagagt
//
LOCUS       KCLA01001979             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32140upu ultra-conserved element locus uce-4776,
            sequence.
ACCESSION   KCLA01001979
VERSION     KCLA01001979.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-4776"
BASE COUNT          223 a          163 c          156 g          256 t
ORIGIN      
        1 gggggctgca gtgaaggtga aactgtcata tcgatctttt tagcactaaa atatgagcca
       61 ctttactccg ctccccgatg ctgtgatgtg aaaaataata actcggatcc aaattaaaaa
      121 tattgatctc tggaaggtgt tgaaagtaaa taaacacctt ccgaagtttt cgggtcagcc
      181 aagaaatggt attcagcaat aaatgtgtcg gcgtgtcaga atccagggtt cttgatctgt
      241 ttttcctttt gaattgattt ttcattactt acttcctaaa agtgttggaa tttggtcctc
      301 tgccgttaaa tcccagtgtt tgggcaaatt atttctttgg ggcttatgag gtgctcctaa
      361 tccactcgct cattgattga ttgatttttg actcaataaa cttgcattac ccttccttta
      421 tttaaggctt ccatcataat tttttgtaca tttaggcttg acttttttat ttccctctaa
      481 cagatgagct gacattggtc tatcaaacat gtgggaaaac aattgccaca aggttaattt
      541 tattgccagc tccatgcatt ttaagtaggt gctaggtatt ttccactaca ggctgataaa
      601 ttgcagctga accactaaag catgggaatg aataggagcg ctgtaacaac aacaacagaa
      661 accccatata aatgcatcac aaagcagaag cattaaatgg attatttttg cttcattgct
      721 ctaacttcat tttacgtccg ggcagcactg ggaacgcagc aacgtaacgc gctcttcagc
      781 cgctccgtgc taatgccg
//
LOCUS       KCLA01001980             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32156upu ultra-conserved element locus uce-6103,
            sequence.
ACCESSION   KCLA01001980
VERSION     KCLA01001980.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32156upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-6103"
BASE COUNT          254 a          161 c          151 g          229 t
ORIGIN      
        1 aaagtgaagt tcggctcttc gtgtctgtaa tggacattaa aaaatctaaa ggtgctcaaa
       61 agagaaaaca aaaagtgaca tcttttatgg gtccttgaag tcatccaggt ttttagaatc
      121 aacccagaga gtaagtcatg ccctgttttc ttaactgtta gtagtagtaa ttattgtatt
      181 acaaggaaca attaattgta tagattagtc taacttcatc agttttatgg ccattatatt
      241 tctatttcct acaggtctgc aaagaacagc cctccttttc tatccttgtg ttgaaggggt
      301 taaatgagat gagtgacagc ctttctgcat gatttacaac ttcgagccct gtagtgaaac
      361 cagtgcttga tggatgatcc tgaaagacgg agactaacca taaatcatgt ctttgaatca
      421 ttgacaaaga taaaggagag aaagaaaaag cactggcatt gacattcatt ctcccaataa
      481 tgtacattga ctagttacaa tacagaacct taattaaaaa agcgaactca aatagtcacc
      541 tcagtgtagg gaatgcatag ctctggaagg ctcatgaaaa tcacaaataa aagttcaagc
      601 cacatccatg acaggttacc tccccgggaa aagcacgcag atgtgcactt gccacagccc
      661 tgcactggca agtaaacctg ataaacactg gtcttaacct cctcatcatt tagcaccttc
      721 ctttctattg gcacctgttc ttaatttctt cttgttattg ttagagctga acgcccagac
      781 aaggtgagag ccttg
//
LOCUS       KCLA01001981             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32172upu ultra-conserved element locus uce-6693,
            sequence.
ACCESSION   KCLA01001981
VERSION     KCLA01001981.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32172upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-6693"
BASE COUNT          297 a          192 c          206 g          245 t
ORIGIN      
        1 ctctgctagg gaataaagag aatagtggga aaatgccaag agattattag cttagccaaa
       61 gattccacat ttgcactagt aattaaagtg ttttgcattg gatgccagct ttggcaactg
      121 ccactgacaa aagatttcac acatgcatgg atgtgagcga gcaccctaga tcttcctcac
      181 tcacacacgc gcacgcagac aaacagaaag aatgaagtaa gccattaaga aatatttccg
      241 cataatgcaa ttattacagc tgtataattg agtggggaaa ccattgatct ggagtagaaa
      301 ggaaattgct cttttcattg tgttcctatg aatatgtgaa cattaatctc aatctataat
      361 caacgttcat ttcaaatctg attgcgtgcc actaaacacc cgtagctatg ctaacattat
      421 gttaatacgg ttcaacatca tagctcccag cttcacagca caaatatttt tctttggcaa
      481 tcaatagtaa tttcagctga gtggatggaa gtcacgtttt aatggtaatc tttcctccaa
      541 gcctccgagt ggaaactcga ctgatacctt aacacggctg cggtgcgttg catgtaatca
      601 gataaattaa cctaaaagag agaaagagaa aacacagatc agaaataaaa agcagtgcca
      661 agaagctcta tgtttccctg atagataaaa gtgctcatta ccatgagaga gagggtggat
      721 ttcaactgaa ttcccttggc ttggagccgt ggctgtagag gcagcaggtc acagaagggg
      781 atgcctctga ggaaagggaa gcaaagcaat tcagttaggg ctgacctgga ctctgcttcc
      841 cagagcctgg ctggcctcct acactggttt gttcaaggat agggagtctc agtttaaaac
      901 agtgcattga aggcttcctg caggaccctg cataaatcat
//
LOCUS       KCLA01001982             677 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32187upu ultra-conserved element locus uce-7656,
            sequence.
ACCESSION   KCLA01001982
VERSION     KCLA01001982.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 677)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..677
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>677
                     /note="ultra-conserved element locus uce-7656"
BASE COUNT          192 a          137 c          154 g          194 t
ORIGIN      
        1 ttttcctttt tttttaaatt aatcaggatt ttgttgttag gctaaaacag actaaaaata
       61 aacagctgta tagtacttca ttaagctgcc tgcttggagt gattttccca ttgattagtc
      121 tcagggctaa tgctggttca ttcctcattt cattgctaat taacatcagc tctgctcctg
      181 accacttgac cgcactctct ctgtgaacat gtgctggttt ggcaagtaat aactgctccc
      241 tcctccttag aaaagagaat taggggagaa aatagctatt aaggacaggt ctctggctgc
      301 gtctgctgta tggagagcaa agtgtaaaac catataggcc catacgaata gtaataaaca
      361 gagtttacag agcaccggag tttgattgag gaactatgta aatacagatg atgagctcaa
      421 gctgctctat gaaatgacag gctcggctca cctcctgtca gctcggttga ttcagatctt
      481 tctgggatgc tcatagtcca cattacctga cccaggggct tacagatgct ggtgacgaga
      541 gagagggctg gtttggatgg gcagcactta ctttccaaag tctcagcaat gctctcagag
      601 gccaaataac aaaatatatt ggcagcaggt acagcaagag caggaaatgt aatgctatga
      661 tgatagcttt gtcaggc
//
LOCUS       KCLA01001983            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32202upu ultra-conserved element locus uce-3239,
            sequence.
ACCESSION   KCLA01001983
VERSION     KCLA01001983.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-3239"
BASE COUNT          295 a          180 c          223 g          323 t
ORIGIN      
        1 ggagtaaatc cagcaaaaaa agagagtaaa ataatatgca ggtgtactga gaacctgcag
       61 ttgtttagag aaatgcatct tccctgaaga acctaacata cagatttgtt ttctgatgga
      121 agagttgcac tttggaaagt atttttccca aattagcctt cctcttggtt ttccttttat
      181 tcttcacaca aggtgtggaa atggcttttt gtagggaata ttttgttgtg gatattaaac
      241 aaagaaatac tttcaccaat aaagccacta tatgcaagta gctttctaat ctcttaattt
      301 tgattgtttc ttcgttacct tacaagatat atatttctcc tctctttagg atatctcttg
      361 tcagatttaa ggcttattta aaacgaacag aaagctgaag caattttctt tattccattt
      421 cagtctccta aggcctattt ccccctggtg agctcatagc aacagggggg tttaagggaa
      481 ttcagctttc tgcaaattaa tgtctcacat catgaaaatt caggactttt tttttctata
      541 tcttgaaaaa gtaatacagt gagtgcgagt attatttctt gccagcgggt ggaagatgaa
      601 tgattttgtc acagttttac tgcttgatga gcagtgtcct gagggtcagg cttaagtctg
      661 tgtcactatg ctgctcatta ctcttgagct aaataagggc tgattggatc taaattgcct
      721 agcacatggg ctgcagatga gctcagtgag taggggatga cctgctattc aggctgggag
      781 taaccccggt gtgcaaatgc tgcattagaa caccgtggga gaatgagagg ctaccgaccg
      841 ctgccagcaa aagaaatcga aatgtaaaaa ctctttgatg ctgcaatgtt agaatttgaa
      901 atgtaggaag tgacaggttg atggtactta tcagctttgg ctggattaga gaacagtgtc
      961 atcttgctta tataatgaca gaagaatgaa gctagctccc aactactccg tggtgcagag
     1021 c
//
LOCUS       KCLA01001984             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32218upu ultra-conserved element locus uce-718,
            sequence.
ACCESSION   KCLA01001984
VERSION     KCLA01001984.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32218upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-718"
BASE COUNT          230 a          144 c          146 g          247 t
ORIGIN      
        1 atagagtgaa agtctctcca gagggtaatt attctttggc cgctcaggca agaagttccc
       61 tgtcactatt aaggttaata ttaaggtagc tctgctatac tttcacatat tagggaaaaa
      121 aatcctcccc agaatgttat actattaatt gccaatttgc atatgtgtac agctgctgtt
      181 ttggctccga tcttccatcc gataagcttg ctggaggtat cacagagcac ttggcagctt
      241 tcctatttga aaagaaagcc ttcctaacta cagaacagct gatagtctat cagtgataga
      301 ccctgatggc gtgaattaca attacactac ttttcacact aaatctgggt gatagctact
      361 tggaaagaag tttcatcatt ttttaccaca aactggaaaa agaattacat ggtcatgctg
      421 tgcttttaaa ggcagtttgg ttcacttttg tctatttaac acctaattcc gaggagtcca
      481 taggcatctg gagatctgaa cgtcgcgtaa tgaattcact gtttagatgg gagatttaaa
      541 aaatctacct caaattacat ttattaacaa ggcgagcgag aagtgttaga gttgttagac
      601 gcttcattta ttaaataatt tgtgggtatt ttcagttgtc atacccagag tcatgggggt
      661 ttacttattt tttaattagc aattccaaaa caatgctact gcagtttaac aattcatcac
      721 ataatctggg gctcttcagt gcagccacta atactagata attcaga
//
LOCUS       KCLA01001985            1020 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32233upu ultra-conserved element locus uce-4347,
            sequence.
ACCESSION   KCLA01001985
VERSION     KCLA01001985.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1020
                     /note="ultra-conserved element locus uce-4347"
BASE COUNT          290 a          255 c          238 g          237 t
ORIGIN      
        1 gtagcagagc tgaagagcag agcatggcag agaagataaa tgggtgaaga aggtagtata
       61 taagatggaa gagaagaaca ctgtaatcca tttagctgaa tgaggaggta cagatcaata
      121 gatatgaact gcaaagcaat ggggaccaac tgaggacaac tgcgtaactt accccaccta
      181 aacacatcgt tcagattaat gctgccacca ctccatgtga ttcctctcca agccaaagtg
      241 actgctccaa gcaaagcttt actggcaccc atggacttgt gacccatctc agcctcccca
      301 gccacattct ccccctgttt ggcagcagca ggagggatca gcccccagac tcccatcacc
      361 ccaaagccac catcccataa agttttggta tgcagaaaaa ggcagaacat gcaaaaccca
      421 tcccacccct gctcccaact tacatttaaa ggctttaggt gaggtttcgc tagtctgaat
      481 ctttggggca agcatgcgtt tgccaaaaac ctgagcatca aaacttgcat aatcgaaggt
      541 gaccttggag tacttctcca gctccttggc caggttggcc cgaggggttg ctgggaccat
      601 gttgggccga tagcttccgt actgagggat ctccagttgc ttcacaaagc acataggcct
      661 gaggatgaaa caaagagcaa cagtgacttc tctttcttaa tgagatggct gttgagaagg
      721 gactggacat aatggggaca cagagctgca ccttgtccct gagagatcat taaaaaggag
      781 gaggcagtga cagtcctttt gctccccctc agattttgag tctcttagat ccctttttat
      841 ttccccctat ttttttttgt ttttaagcaa aaccccaagg tgtcaagctc atgaggaaca
      901 acatccttcc aggcctgagg cagcatttta caagagcagt agaaacttgg gcatcactca
      961 ctgacagcac cctgaagcag gatggcacag aaggtgtgag gaccccagtt tagctctgtt
//
LOCUS       KCLA01001986             852 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32247upu ultra-conserved element locus uce-712,
            sequence.
ACCESSION   KCLA01001986
VERSION     KCLA01001986.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 852)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..852
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>852
                     /note="ultra-conserved element locus uce-712"
BASE COUNT          289 a          164 c          174 g          225 t
ORIGIN      
        1 tttcaaacag actttaaaat actttgcaag cagagtagct cgatgcactg gagctctgga
       61 cacgaggaaa ggcagaggtg ctgagaagtg gggcaaaaat ggtgtttaac tttgggcaaa
      121 cgacttgaga taacacaaag ttagccccgc aggtctgtat ggcacaagat tataaagaag
      181 aaacttggct cctgaaaata aataaataaa caaactagtg ccaccaattc attccaaaaa
      241 ctcagaaaga ttccccgtgt ttgttttaac ttgcccctac aaaaggagag gcagggaaca
      301 atactgaggt ccagctgttg tttttcttga agacatccca gctccccatg cagagaaact
      361 acacttgaga tgagctggct gagacaaatg ttctgtctac actttaaatg gcagctggtt
      421 attaaatgac tcccaatagg atgaacactt gctattgaca ataaggtaat ataaggacca
      481 tgcagagcaa tcaggatggg aatgtgaatg aaaaatcttt aatctgaaat tacagctgtc
      541 agggttatat tataaaacat gaaagttgca tctgcactta gaattaatgt gtcccaaaag
      601 ccaagtttct cataaagtgc atcttgcaga tacatctttt ataaatagac tactggtctt
      661 ccataaatca aaccaaactg tagcctatac taaggaatta aaagggtcat ctcttctggg
      721 gttggtattt gggaaaaatg agcattgatt tacaaagtcc aacagacgcc ggccgcaata
      781 ttactttcaa cagatactca ctggttccag tgtgtcaaac aaatgacttc gggtctttat
      841 taccagtctc aa
//
LOCUS       KCLA01001987             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32263upu ultra-conserved element locus uce-4887,
            sequence.
ACCESSION   KCLA01001987
VERSION     KCLA01001987.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32263upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-4887"
BASE COUNT          289 a          179 c          199 g          260 t
ORIGIN      
        1 agtatttgtt gtacttattt aaaaatacag tttgcaaggc agatcagact gcaatattca
       61 cagagctttc agtaagtgta cagccactag aagcacatac ttcacacaaa attgttcaga
      121 gaagattttt ctacaatatc tttaggcaac aaaggacatt tctggtcatc gtgtgaattc
      181 tatgtgactc aaactctgat acaaacgtag gattttcttc tttgtactaa gtatgggaaa
      241 gcctgctcct ttgagagtta aaatagcttt cgaagacttc tgatttaaat ttcaaactct
      301 tgatcatagt cagggagtaa atgtttttat cctgaaattg aaaattgagt tctttagctc
      361 tataccaagt gaaaatatta agcattttgt tgtatccact atgtgagcca agttccccac
      421 tgtgccctca aatccacagt gaatgaacca tatttgtatc tgcttatcag aaggagacat
      481 ttagaaagac aatgagcctg tcctgctaga cggaggctcc tgatgctttt agataggcct
      541 gtggtgaact gcaaaatggg ccctaaaatc aggctgacat ggttgcttaa caagctgcag
      601 tattagctgt tggctcagag aatttctagt gtcacccaca gggctgatga tggcagccat
      661 cataattaga atgcatgaat caaaaacacc aggtgaagat tttgccttgg aagaaaaaaa
      721 agacagaagg agggaattac catgcccttt gactattaag ctgctgcatg cagctggatc
      781 agtgaccagc gactgggcgg attatgctat ggagatactt gccatagcct catgcttccc
      841 acacccagtg gctgtcaagg caaatgctgt gaacgacttc aaagaaagtg atacaagagg
      901 ctagatgggg agaaaggtaa ccccact
//
LOCUS       KCLA01001988             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32278upu ultra-conserved element locus uce-4928,
            sequence.
ACCESSION   KCLA01001988
VERSION     KCLA01001988.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32278upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-4928"
BASE COUNT          210 a           91 c          102 g          186 t
ORIGIN      
        1 aggaataatt agaatggggg atctgggtaa gacacacttt ctatgatgta gacctgaata
       61 gtttagttat aagtctcgag cactatagaa ccttcagagt tgttgaacag gaaatctgaa
      121 gaaaaagata aatggaatta atttattttg aatttatcta catgtctctg cctgcattaa
      181 tattaagttc aatcgaaaat ctaaatagaa agactgtaat gttagaagtt ctctcaatag
      241 catcagcaaa tcattcttgt ttaccctaca tgctaataaa acaggaacat gacactcctg
      301 aaaacaagat tgcaaaatac agaaaatgtg gtctgacatt ctttttctcc ccaaaggagg
      361 gactgccact aactaaagta tttcttatga aagctcgatt gcttaagatg cagaatatta
      421 agagagaaaa acactttagg acacagccat gtcaccagct gttactcacc cttaatgaaa
      481 ttgttaagtg atattcttca taaataggtc agagaaactt ttgaattgtg aagaatgttt
      541 tatctctttc tttgaaatgt ttgtattaaa tttagaactg gtaattcat
//
LOCUS       KCLA01001989            1136 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32293upu ultra-conserved element locus uce-5158,
            sequence.
ACCESSION   KCLA01001989
VERSION     KCLA01001989.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1136)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1136)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1136
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32293upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1136
                     /note="ultra-conserved element locus uce-5158"
BASE COUNT          311 a          224 c          247 g          354 t
ORIGIN      
        1 ttataagctc atcgcgttgc gatgtaattt tttatttcaa gtagtgccaa aggacggttt
       61 aaccttccac cactgccgct accatcacaa cctctagact tattaatacc ttcattcatg
      121 tttctgtata ccagtgctga taacaatacc atctggggag gaggacttga cttcactagc
      181 gtgctctgtc tagtaccaga ccagtgataa aactcatgtt tatttagact gtgctagtgc
      241 agtacagctt tagaactgtc atcctctgtc catagaggct ttctgagaaa tttacaattt
      301 aagcattttg tttcatgggg aagtagctcc tggtagagct atcagcactg ggtcttgaac
      361 taagatctgt ttagctttcc agtataaata aacaatttga tggccttcag actagagatt
      421 ttaatgccta catatagttc tattaaaata atcaggtact ctttagcttt gaaaccctct
      481 tgtcttacag atgtggttag gtgttgatgt accaaatcaa ggtagtaaac agtccaagat
      541 gcagttggag gccatcctgc cctgccctat gctctgtgaa ctgacctagc taggccttgt
      601 tcctctatct gtgaatgcgt gactcatcga tatgggcgtt tgtgttgggc ccataccaac
      661 cttgtttagt cccacagtgt tttgttcgcc ccacggaagc aaagaaagca gcagatgaag
      721 ccaagatgag atttgcccac atagatggag atcatttgac gttgctgaat gtctaccatg
      781 ctttcaaaca aagtaagtgt gcgtctgctt cagctaaatt acttgaagta ctttgtgctg
      841 cctggggtcc aaggacagtt gaatggctca ggcttgtttt gtaaacagtt ctgttgtagt
      901 cttacataag tatgttaatt taagtgctac ttgcctttgc aggggaaact taataaaaag
      961 agccaagaga tcatgtaata aactgatgag tatggagaca agccagcctt taaatcagtg
     1021 ctgggtaacc ttggacagaa ggaagtaagc attcctgtaa ttaagagatg ttgggagttt
     1081 gttacctgca ttaactatag aaagccctgc gtaattgctt agtatttttc agggag
//
LOCUS       KCLA01001990             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32309upu ultra-conserved element locus uce-6881,
            sequence.
ACCESSION   KCLA01001990
VERSION     KCLA01001990.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32309upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-6881"
BASE COUNT          163 a          165 c          129 g          172 t
ORIGIN      
        1 aggggggagc cctgagagcg caccccctgg cagctggatc gctcgcccgg cgatgaacgg
       61 cacactgcca tctgcaaaag gagccgagca tctctccggg ctgcaacact tagcaatctc
      121 ggatgacatc tgagtaatgt tgattttgtt tagatgacaa cctcattatg gcgcataatt
      181 gcgaagcaat ctcctagtaa acaccgggtt aaaaactact ggaagatgct tgttcctctc
      241 attattaatt agcatgtgtc cactccgcca gatccagagc cccaacttca tttgtaatgt
      301 tcagccgaat gcacgagtag cttttgagta attattttcc aacatcatct aatacctctc
      361 cgcacatcaa ttaaaaatcc tcttaacaag gcacggcggt ttgttggaga tcaaatgcct
      421 aggccagagc cgtatcaatc atgtcgagct aattagtggc tctgctttcc atcgtttgtt
      481 ttactttatt attctattat acacttccta atgaaaccaa ttgaacaatt cttaaatctt
      541 tgttcaatta attgaaggct gaagggccgg ctacctaggc aggctctccc tgctccacag
      601 ctcctgcctg cgaggcagaa gcccctccc
//
LOCUS       KCLA01001991             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32339upu ultra-conserved element locus uce-7036,
            sequence.
ACCESSION   KCLA01001991
VERSION     KCLA01001991.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32339upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-7036"
BASE COUNT          215 a           89 c          125 g          189 t
ORIGIN      
        1 gagttgaagg atttatagaa gaatttctac tgagatgttt ttcttcttta aaagaaattt
       61 gtttactatc agtctttgaa aagcataaaa gggagaaaac tatagggtaa agaagtaaaa
      121 cttttacatg ttcaagcttt gtgagaaggc tggttctggt agaatgtgtg acatgtagcc
      181 ccatgtgagt aatataatat ctcaaataaa aatcagccca tgaatataca taatccaaaa
      241 ggtaattctc ccaatctctg aaatgtaatg gagccactct agatcactga ggcatgaata
      301 tttaccgtat tcaggcttta ctgctctcga tctgggttca attttacaaa ttaaaatgaa
      361 gactctgtgg atagagagat taaagaagag catcccaaag cctgcctgtt tccttggtgt
      421 ggtagcagtg atctggttac ccttctgtta ggttatttct ttttagttaa tggagtaggt
      481 cagaagcaat tgagaatgga aagaggaggt cattattggg tcacaacctt ggagttaaag
      541 gctcactaag aaaaacaaac atagagtgaa tataaagcta catttaaaac taaaacctgt
      601 aatgaaaaat aatatttt
//
LOCUS       KCLA01001992             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32369upu ultra-conserved element locus uce-5821,
            sequence.
ACCESSION   KCLA01001992
VERSION     KCLA01001992.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-5821"
BASE COUNT          308 a          165 c          160 g          247 t
ORIGIN      
        1 catttgtatg aaaagatatg caagccatgg aagaatataa agaaattggc tatttgttta
       61 ctattaaaat gaagccttta gctcaagcag atttagtcac taagaactcc acacgtcagg
      121 ttaactatga aaaatcatcc agggtgtttt cataaaatgt gtttgcttaa gagcagtcct
      181 tttagaaata tacactgaat ttcagaagga cacttccagc acaagaatcc tacatttaag
      241 gttagtcctt cagcaaatac atggaactgt tacaagtcaa cagtaagtgg tttataaaat
      301 gtaattttat ttaatgttac tttgctgtta cagagggcat aacattttca caaggctttt
      361 ttgggactac aatcaatgat tagcaacaca caatagtggt ccaaactctc taaataacaa
      421 tcactggaca aacttgacac cttctcacat gtgcacaaac ctgcatggaa aagtacttat
      481 acttggacag gtgaacttca atttgttttc tcattccagt gtattaagaa atgacatgca
      541 ctttagtctg ccaaaaagca ctgcctgtac tccagcaata acatgctgct tctaatacat
      601 agtaaagtga ataccagaac tacaaaggca ggagtgtagg tgaactttta ttggggggga
      661 taccaacgta aacagcagca actgaaaata agagaagccc ctgtttttga acacacaagc
      721 ttctgtaatt acacaatttg ccattttcca aactagaact gcttgacttg atctgtccca
      781 gtacttccta ctgaaaagaa tacacggtag cacatgaaag tcaattatcg aaaggaaacc
      841 ctgcggagta agacgggaat gtggagaatt aaaagctatg
//
LOCUS       KCLA01001993             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32385upu ultra-conserved element locus uce-4944,
            sequence.
ACCESSION   KCLA01001993
VERSION     KCLA01001993.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32385upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-4944"
BASE COUNT          245 a          153 c          163 g          323 t
ORIGIN      
        1 ttgatattaa ttgctaagat ttttaggtct ctatttggaa gcaccttaca gaagagctct
       61 acacccttta aatgtttaat tcttaccttg cagagggttt agttgtgatt tcctttggta
      121 ggatctttaa tatttctgat ctgaaaactg aagatcatgg tgaaataaaa gctttgtgac
      181 aggacgttac tcacgacaga tgagttcatg ttacgcgttt gcaaactgca ctcatttgca
      241 tctggaacaa agacgaaggc tgcccttttt ctgttattcc gataaaatgt tcagttgaaa
      301 ttgcatcaga tcagttaata ttgtagtttg atatagtgtc tttttgtgct attgagccag
      361 gactttggaa cataattgcc cagcagtatt gatttaattg cctacgttta tttgtggact
      421 cctaattatt gactggaggt aaatttaatg gagcaacctt tatgaatact gggaactgct
      481 gctgttgctg ttatacataa tgaactgcat catatccctt tagatcattc ttcaagctaa
      541 ttttattcca ctgtgacagt acgataacat ttaagatgtc atagactttt tatttttatt
      601 gctgacatac accgttttac tgctgcatta gaattattgg ggggactgag ggaagcacta
      661 gttgctttta actgtcattt tataaattcc cttaaagcgt aatgataaag gatagcacaa
      721 ctctgtttta cacttcatct gtacctttat tttctatact ttcatgactt gaattgtaca
      781 gagcttgtag aaatcacttg gtggttaaag ccacatctca aatggccaag gagtcctttt
      841 cagtttcctt tttgtatttc atcagcatcc aaagtataca gtgc
//
LOCUS       KCLA01001994             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32400upu ultra-conserved element locus uce-2565,
            sequence.
ACCESSION   KCLA01001994
VERSION     KCLA01001994.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-2565"
BASE COUNT          171 a           97 c           98 g          183 t
ORIGIN      
        1 ctgctcccct aatagaaata ctgtaacatg ctgaaaagaa aatactttaa tagtggcaag
       61 tatctcctgt caactaattt gatagttctc tatcaggtaa accattggtg aatacatcga
      121 ttctttttat ttttcactgt tctgtcttca gtattcccag gttttctctg aaccagttgg
      181 gcaaaaattg atttttattt gttccaccgg ccttgtggaa aattagctta tgaactggtt
      241 tttataggaa gactcaaagc acagaacagg ttgaaaaata agcctatagc agtcaaaatt
      301 gttgtctgaa atgtcttcag actggaaggc tgaatttatt gctcaaaaca agtactagca
      361 ttgtggaggt gtgcagtcct gctcattatc actggaaaag ggggaaccaa aaagcacagt
      421 aaaaaattaa attttaataa tgctagtgat attttctaaa tccttcttga cagaaagatt
      481 ctcattattt ttatctgtct cagagtaggc tcttttaatg ccatctcaca aatggcctta
      541 gccatgatt
//
LOCUS       KCLA01001995             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32416upu ultra-conserved element locus uce-4066,
            sequence.
ACCESSION   KCLA01001995
VERSION     KCLA01001995.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-4066"
BASE COUNT          251 a          121 c          119 g          252 t
ORIGIN      
        1 ttcatataaa cattaatgtg aagcattcct attcacataa aacagagctt ttaaatagtt
       61 gctttccaac acagtttatt ttcttacatt tactctaatt gtaaccaaaa tagcccatgg
      121 atctttagtg ataggtaaga cccacaaagt gaaggttatg gaataaacat gatgatttaa
      181 cattatttat gcaagctaag gaaaaatatt tttctcttgt tggataaatg tcactactgg
      241 aggtgcaaca caatatcttg gctacctaca tgaatgatta attaaaatag gtaatcaaga
      301 taaacttctg cacctagcta aaaggactga aagtttatca tgcctaaata tgtttctcat
      361 acatttactg caaattagtt tttgaaagtg aatttcaagg tctactgact ccgaggttca
      421 ctaactcagt tttcattaag ttttcacaaa tgatctactg tagcattatt cttttatagt
      481 ggtgcagatt taaggcccac tatgaaaagc aattatactg tcagaaaagt gtattttgac
      541 ttattaaaaa attgaaaggt ttcataaaac tatttatgtt cttgttcatc agacgtgcat
      601 gttgacagca taacggaaga aagcattttt ctggggtgaa tctctcagct tcttctcatc
      661 atgagacaac gttacttagc agataacatt aaaacctgtg taggtagtaa attcaaggta
      721 ctttgaaatt ctgccttgca act
//
LOCUS       KCLA01001996             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32431upu ultra-conserved element locus uce-1562,
            sequence.
ACCESSION   KCLA01001996
VERSION     KCLA01001996.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32431upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-1562"
BASE COUNT          283 a          144 c          123 g          210 t
ORIGIN      
        1 atgcaaataa ttctgttcca actgcctctt tacattagct aaatgaagtc atcagtaaac
       61 aaaattggaa gaaatcttca cagaactgct gtaaacaact tgaaaagttt tatctcccga
      121 aagattaaca ctgttagaag acagctcgga ttcgccagac atgttcacca ctcagagagt
      181 ttatagtcaa aaaatcatct ctctcatctc acccaaactg atagtggtca cagcaaatta
      241 taatcaaaga tagatttctt ggagggtgat aacgccatta gatttaagga attaaaaata
      301 catgaaactt ttgagttaat gaacagggtc cttaactgct catttaattc aaacagctgt
      361 ttgttaatgc cctaagcagt gtcataaact gtgaaaatac tgttgagtgc aagacactag
      421 ttaatgctat aaagcaacac atgctctaat attaaaagga tttaatggga ttaatagaga
      481 ataaaacatt aactccctat tatgatgttt ttaggaccca agggcaaatt ctggctaaaa
      541 aggactccgg ttctaaaagc acaaaaagta aaccatagca ctgtacagca aatcatggca
      601 attttatgct cctgaaaaaa agtggaaccc tgataagatc acatctgttc caatcacaga
      661 ctggataaaa tcactgttta ctaaagtcct aaataactaa atatgtggaa ccccaacaag
      721 atcccatctg ttaagactac aatttggata aggtcccatt
//
LOCUS       KCLA01001997             373 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32445upu ultra-conserved element locus uce-3110,
            sequence.
ACCESSION   KCLA01001997
VERSION     KCLA01001997.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 373)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..373
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32445upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>373
                     /note="ultra-conserved element locus uce-3110"
BASE COUNT          121 a           63 c           70 g          119 t
ORIGIN      
        1 tcaatggtag gatgctagag ttgcatacta aagatagcag acacatgctt catggaagta
       61 gcactactga aatataaaca agcccccatg gtccagacat ttttggttat gtttacagat
      121 taaatctcag gatgtgtata ttagatgttc ttgtttcagg atattaatgg caaaatgaac
      181 ctgtttttga tgtttaagtc acattaatgt ctgatggact gttaaaatgt taaagggtac
      241 accagacatg ctgtagtatg tgacatatgt tagtcatacc atactagcta ggaatttgga
      301 tttgtttata atgaacataa attgactgaa tttaaccccc ctccacctcc cccaaaagtt
      361 aaatcacatt agg
//
LOCUS       KCLA01001998             748 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32460upu ultra-conserved element locus uce-2386,
            sequence.
ACCESSION   KCLA01001998
VERSION     KCLA01001998.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 748)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..748
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32460upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>748
                     /note="ultra-conserved element locus uce-2386"
BASE COUNT          254 a          158 c          100 g          236 t
ORIGIN      
        1 cacctctacc tttttttaac tattactact ttttaaaagt ctctacagtt ttgctctctc
       61 tcagacagaa tatctttatc cctcttctaa ataaattaga aaagcaaaaa acccctatca
      121 gatctcaaca ctgctcctca gtaatactaa cacagaacac aacttgtaga tattctgccc
      181 attacctaca gtcttgttct ttagacaaga atcaacaaaa ataagttaga gtgagaatat
      241 ctcgcatgca aacctaaaat cacctacaca catctaaaaa aattaatatt tagaatgaat
      301 gcagcatctc attccacctc tctctaattc atcacacctc acctgcttgc caacattttt
      361 tattgccagc tgttcaggtg tcatcttatc ttcttcttca acagcctgtg aaagaaacac
      421 agaaaaggtc agtgtttcag atttcattta tttttctcca agccacaaga ttctcaaaat
      481 atcattaaaa aatcaaacag ccacacattt cagaaagtca aaaggaaaag cacttctgct
      541 tttcagcagc catggtatta attgctaaag gttactgcaa aagatcaagg caaatattct
      601 ttaatggttt tattgtcaga ttatttgaaa aaaatcttga atggacaggc tgaagagagt
      661 tagactagtg aagcaggaac aaaatgatgt tacctccatt gtttcaacta ctggaggttg
      721 ggtttttgta ctgtttcaag tcatttat
//
LOCUS       KCLA01001999             899 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32476upu ultra-conserved element locus uce-1383,
            sequence.
ACCESSION   KCLA01001999
VERSION     KCLA01001999.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32476upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>899
                     /note="ultra-conserved element locus uce-1383"
BASE COUNT          255 a          160 c          189 g          295 t
ORIGIN      
        1 cagtgaacta gtctgccttc ctgttagctc aacattgccc atatgacact gatttacgtg
       61 cttgtttttg atgaagaata aaatgaacat accggccacc ttctcatttt tatggttcca
      121 gttgtcatgc tagcattatt ttcaatttgc ttacttttga acagtcttct tacctggtgc
      181 aaatagtttt aaccacctaa agttttaaac aggagggaga cttaacaaaa ccctaatttt
      241 ggagaactac aaataaaaag gaggagagag agaaagagca cactgtccct gtttgctatg
      301 taaagtatgc ctcatttctt tgatcttgag taataataat tctggggagt tatactgttt
      361 tcatatgctt caaagctgtg tcaaagtttt gctgcttaag ggtacttctt tattctgttg
      421 gctcttgggt actgagatga caggtcctct gtactaggtg caggcttttt caagtcatag
      481 ccttcagcaa aacatcaaat taccaaatac agggtaacat acttctacac aaatgccttt
      541 cctgtagata tattatacca tatatattaa atactttagt gttacacggt acattttatg
      601 tgcaatagaa agtgatggtt tgaggtagcc ttaggggtac ttttttccac aagcagaaaa
      661 agctagtgta tactgtatca agtatggttt ttacaggact ttctgcctga aggcctttgt
      721 aaataagtaa tgatcaacag attggctgtg ggtttttgaa aaacatgcct gtgtcagttt
      781 gcatgatggg ggaagatttt caaagtagag cctgctttca ttgccggctg aagagggact
      841 gagggagagt agtcgtcctg agcctgagct gtctgctcag tagcacatca gaattgcta
//
LOCUS       KCLA01002000             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32492upu ultra-conserved element locus uce-3720,
            sequence.
ACCESSION   KCLA01002000
VERSION     KCLA01002000.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-3720"
BASE COUNT          237 a          131 c          136 g          232 t
ORIGIN      
        1 tgaactggtt ctctcctgta aggaaaacaa gtgtttactt aggtgctgta ataggacatg
       61 caagaaaaaa agcaaatgag aaagcatctt attctagctc taagctttgg tgtaatagac
      121 tttgactaac ccaagttata acacataatt taccacatgt ttatcccagt tcaatgaaaa
      181 cctctttctg tagcaagtta aatactaccc actcataaaa gctttcacat tacagtaatg
      241 gggattataa gaacagaaga aagttttact cttctttata gtgaaaacaa atgtgttttt
      301 ctccagaatc tgccaagcct gtgctttaat gatttaacag atggagttgg cacatgtgaa
      361 cctggaagat gcagctgtct gatttttcca gtctgaggat tttttaactg cattaatggc
      421 atagatgatg gtaaaatatc acctccccag gctgctttgc tctcctaaca cataatgtct
      481 tttaaggaaa aaaaaaagtg ataggagact ggggtgagga aaaggccaga gaaacgagga
      541 tttgaaaagt ttcatatttt ctgtcttcac agcattaggc tcttaagctt ttcactttga
      601 atctcatgag ctctatccag gcactattat ctgagatctc aggattctgt taattgctct
      661 aaataaacac catttatgtg aggagaccaa taacctctaa tagtttgtcc tttgataaat
      721 gactgagtat tgcatt
//
LOCUS       KCLA01002001             236 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32507upu ultra-conserved element locus uce-5311,
            sequence.
ACCESSION   KCLA01002001
VERSION     KCLA01002001.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32507upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>236
                     /note="ultra-conserved element locus uce-5311"
BASE COUNT           86 a           31 c           47 g           72 t
ORIGIN      
        1 aacctaaagc tgaaaaatgg agagagtgca atgaggcctt tagaataatt atgtgttgtt
       61 aattgaagaa tgttaatcat gtcatattag gaggaagaca gggttaaatt ggtaaaattt
      121 caattcactt aggccttatc tcttgttgga aagagccaga tgattaatcc ttaatattct
      181 tctgggatac agagaacatc agcaattaaa ttaacaacta caaagtttat gctcag
//
LOCUS       KCLA01002002             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32537upu ultra-conserved element locus uce-5220,
            sequence.
ACCESSION   KCLA01002002
VERSION     KCLA01002002.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32537upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-5220"
BASE COUNT          196 a          130 c           94 g          181 t
ORIGIN      
        1 actactgtag tcacttacac tcttacaaaa catgtgataa ccccgatagc ttaatattca
       61 gcatatataa ttcatttaca tgatatagca ctcttgattg tggccctaaa acagttttta
      121 ttcatatcta gcagctttct agatcaacca caaaaacttc tacagccagc aatcaaacta
      181 cggaacctcc agaaattaaa gacccacaat attaaaatac acagaacaaa atatctgagg
      241 tataagataa aaaatgtaat tttttcctct ttttagagtt gctaaaatga tgcactactg
      301 catgtattgc aatacccagg cctcggaaag cttccttttt ccccacattg gaaggttttt
      361 atggttttgt catttagtat ggagcaaaac ggctgtatcc ccctcggtat atactagcct
      421 gtaatgaaga aagaacgaga ccgacatcat cagcatggct cctagtcttg gcatcagtca
      481 agggtgcaaa agcattctga aacaaagcaa tttgatggat tgttttttaa atttactttt
      541 tttgacaact aggtttgcaa tttcattcga cacgcctact gccccatcct caaaggcaag
      601 c
//
LOCUS       KCLA01002003            1160 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32552upu ultra-conserved element locus uce-182,
            sequence.
ACCESSION   KCLA01002003
VERSION     KCLA01002003.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1160)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1160)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1160
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32552upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1160
                     /note="ultra-conserved element locus uce-182"
BASE COUNT          321 a          239 c          231 g          369 t
ORIGIN      
        1 taatatatgc tgcatcacct tcctaaagga attgcaggac tagtggataa aaatggtatt
       61 taaagcatat gaatatatca catcccgtaa gagctgaagc tcctcctgtt ttccatgctc
      121 agaggtaaga gctttccctt ctaaaaatgt cctttttttt gtttctaatg ccattattaa
      181 tgttgttgcc atagcacctc acaataacca aagacttgtt tgtttgtttg gaaaccccat
      241 tttacttcct gattaaaggt taaaagttat tgatcagctc agtcaatgca atgaagtttc
      301 ctgttatgag accctgaagt atccagggga ttaaacatct ttcttctaga ttgagggtgt
      361 gtgggggggg cacatggtaa tgctaaaaat gtttgaggct gcaaagatta aataaaggaa
      421 catatcaatt tggagccagt gaattacatc cagctgcgac agtgaattaa gaaccgatta
      481 atggctaaag cttttctcca gtttggatgc tgaagcgaac tcattaagct tttagagtag
      541 ctataatgtg tgtactgtgg gaactgttca atgctattca ggagacttta actgtaagct
      601 cagagcattt cccgcagagc ctctgatgct attttcttta tataacatgt gtgcctgaaa
      661 atccagccaa aaacaagccc tttgtttttc tactttgttg tggcctctct cagctttacg
      721 tttcttgaac acaggtaaat aaactcataa tccagatggt gcaacagatg tgagagcagc
      781 actctgaaat caacagacag tgggcaatac tttccatttt ctcttttaaa cgctaactaa
      841 tatgtaattc ggaatctccg gtgtagttag catctgctcc cttcggccag ccaaaggtta
      901 caggtgttcc tgatgtcatt tcacagtaag gcgtgggcct ggcttgtgag tgagtgccca
      961 ggctctaatc tttccctacc acctaccagt tttctcatgc tgggcttcca tttgctgcat
     1021 cttctgtgta agctcctgct ctctttgctg ggcctgaagg gcttgagcct ttgcttcatt
     1081 gctaatgctc tgctgaatgc tctccttctc cagtctataa aaaaaccaaa caaataggaa
     1141 ataaaaataa aaattgtata
//
LOCUS       KCLA01002004             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32568upu ultra-conserved element locus uce-7069,
            sequence.
ACCESSION   KCLA01002004
VERSION     KCLA01002004.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32568upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-7069"
BASE COUNT          266 a          170 c          273 g          234 t
ORIGIN      
        1 gaggctttgc actgcaaaac cagccgtaaa tgctactctg tgtgttccta aatgaatgca
       61 catacaggaa tgaagagtgg ggtgctcaca gaaaccttga taaaggggtg gcagtactag
      121 taaatgtgga ggctgctgcc aatctgggtg caaagaggaa tcagaaggaa taaggagatg
      181 gcgaggtaga cgcttcatga ccataaatat atgtcaccac caaaatctgt cattgcttac
      241 atcgcagcca ctgcagtgga ggagaaggtc tgcggtgact ggggaggggg ttgctcctgt
      301 gccagtgctg gaaacctcgg gttgaaatgt ggcgtctctg tcaggggcaa aatccatgga
      361 gggacaccgt cgggtcacgc tgactagtag ggctcagcga tcaaacgtgt cacacctgtc
      421 ttggccatgg gtgcaggtgt tctaggtcag ctctcgctgt ggttatcaat cgctgacagt
      481 tgacagttta attttacacc acaagtacct cattacttgt gtaggcactt gaagaacatg
      541 tgggcactgg gttggatcag tgatcaatga caaaggttgc gcagggtgca agtggtagca
      601 gtaaaagtga aggtctccgt gcatgagttg gcagtggtgg ggatacatga caaggggagt
      661 ttagctgaca aacagtctgt cagggctgga agaatggaag cttgcctgag agatggcgct
      721 ccattataaa atacagctca ccatttaaaa aaggaaagag aggaaaaaaa agcttttgct
      781 ttgaaaaagt gtttaaacaa atttaatgca tgtggggggt tgtaaatttt tattctacaa
      841 gcatttatta atgacatgag agcatccagg tgttcaggaa tttcacggtc cgggaaagtg
      901 gagatgctat tttatggaga tatatgcaca tgctcctgct ggt
//
LOCUS       KCLA01002005             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32584upu ultra-conserved element locus uce-6892,
            sequence.
ACCESSION   KCLA01002005
VERSION     KCLA01002005.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32584upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-6892"
BASE COUNT          170 a          114 c          103 g          155 t
ORIGIN      
        1 tttttttgcc ctagtccaat aaaagatatt agttcttttc cctaagcaaa atccctctca
       61 tgaatcaggc cctacacttg caactagtgt gatattgctg gccaggtttc accccagtaa
      121 aattctaatc tatactttgt cttttagaat taagaagaaa atgcgtatca gcagaatctc
      181 ctctctactt tatttcattt ataaattacg agaatgatgc tattatatat tattaatttc
      241 tgctgttctc caagtcggct gcagcagcga gctgcggatg ttggaacggt gtaattatgt
      301 tctagtaggg cagccatccg tttcctttca aaaatttaca ggattcttaa tcatgctgct
      361 catttgggtg cgcagtagcg aggatggcga aacacaaaca gggcacgttc gtttacacag
      421 gaacacctgc ttagcatgat agcagatgtc agtcagtaag cagaacacaa aagaaaaaat
      481 atcaacaaca gcaaactcca agcaatacaa actcactact gcgaagccaa aggaagggga
      541 tg
//
LOCUS       KCLA01002006             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32599upu ultra-conserved element locus uce-5640,
            sequence.
ACCESSION   KCLA01002006
VERSION     KCLA01002006.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32599upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-5640"
BASE COUNT          201 a          191 c          187 g          191 t
ORIGIN      
        1 tgtggagtgt taaattacac agtacaatac ccttctcttt ttaaaagggc tcctgagtat
       61 tttcatcagc ctcgggtagc cgaggactaa gcgcagtttt gctttcacaa tgccatactg
      121 ctgcactgcc ttagcgtttc agaggtcctg cttttcttaa cccagcaact tgcatcttgg
      181 tggctataga ccttgacaga gagaaaacaa actaagcaca gctctcagtg atgccattag
      241 catttctgag taccaacgca ttagaaggct ggattctcgg cagagcagag cagttgagca
      301 ctgttgcagc ctgggctgca gctgcaaagc attgacaccg ctcaccgtgg aacccggctc
      361 aagagaaact ccgggcacag ttccggcatc cgaaataaat taaacagtgt tgctctctct
      421 catccaccct gttagcagcc tctcagttga gctggagacc acacacccag accacacagc
      481 accagctgaa ctcactcgca cgcaacatct ccaagctgtc actctgctga ggtatgagga
      541 ggaaccaggg ggcaggagtg cgagtgtgtg tgtgtttaga aaagctgctt gctctctcct
      601 cctatcatcc cagctggttg tgttttgtgt ggttgggaag gagggaaagg agggagggat
      661 aaaaaaagac ctataaacct cgctaagaaa acatactgat cttggccttt tgtagtaatg
      721 atctgcactc ctcccgtact ggtttagtag ctgatatagg gctaacaaag
//
LOCUS       KCLA01002007             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32614upu ultra-conserved element locus uce-2893,
            sequence.
ACCESSION   KCLA01002007
VERSION     KCLA01002007.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-2893"
BASE COUNT          223 a          140 c           98 g          241 t
ORIGIN      
        1 ttgctgttgt tattattatt agtttatgta ttttactgct attttgagta gggaaaagtt
       61 tacaatgttt ttataatttg agaaacttta attaaaatgt aaatatgaat accttaatta
      121 ttaatttttt gtaacttgca tgttgaagaa gttgcagctt agggtttgtg agattgtcaa
      181 tgttagagtt ctgttcttta tttttgttga tgggcatgaa tatgctcatt tgtttttgta
      241 tattgcccat cccttcctta cagccagaag ctctaatgct gctagatcac tccgtaccgc
      301 ccttacatgg acatggcaac tgacttacac attcactccc atcatcttca tctcctgtgt
      361 agtacactca tagattttta cactcccact ccacccaccc taggcatttt tcttctccta
      421 agtccccctt caccacccct ttctttctca ttcttaagat cttatgtgca ctcatccatt
      481 tctggaaaca cacacacaca aaaagtagag acaaaaagaa aatgtttaaa aaaatatata
      541 tctaattgac caaaaaggca aaaaagcaac caactttgct tttcaataaa cacgctgtaa
      601 gtagatatgc aaacaagcaa aagtaaattc tctaaaatgt acaggatttt tcaagtgtaa
      661 tatgctaacg actttccgtg agacaaaaaa ttacaaccaa aa
//
LOCUS       KCLA01002008             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32644upu ultra-conserved element locus uce-1653,
            sequence.
ACCESSION   KCLA01002008
VERSION     KCLA01002008.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32644upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-1653"
BASE COUNT          175 a           83 c           74 g          127 t
ORIGIN      
        1 cccccctcaa tcaaggattc tttaaaaaga aaaaaacccc aaaaaaaacc caagttagcg
       61 aataaaatgc caaaccacat gtgtaaagga ataaaatgga atagttaaca ttcagctcca
      121 tgccattcat ttccccctaa aatgtaatga taattagatg ggtcataaaa tgctcttctt
      181 ttcattatga ctgatgaaat gcattaaagc tgacagggta ttacctgaca gtaattaggt
      241 tttgtcatga attaaattat ttgaaagcag gctatctccc caatcatgca atttacagca
      301 agattttttt taatctgtgc tacagaagag agaaagagag atagaaaata gcagtttttc
      361 tcttcataat catatgaatt attcacagaa aaaaaatcat cagaaagaac ccgtgcagat
      421 gaagaggctt gccacttaat gtactgcaca gatgtgatc
//
LOCUS       KCLA01002009             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32660upu ultra-conserved element locus uce-7215,
            sequence.
ACCESSION   KCLA01002009
VERSION     KCLA01002009.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32660upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-7215"
BASE COUNT          122 a          174 c          115 g          217 t
ORIGIN      
        1 cccccctttt tttttctcct ctttacccaa gtcattattt taagtttctc agtattaaat
       61 ctaaaggttc atcaactcac atctttacag ctctgtcttt ctgtatacag gaccctgtct
      121 gcctgtttcc tctattgcac tattttgttt gtactactgt aatcattttg ctggcccaga
      181 tctgtgtggg tgtgctggca gctttacaac aaagttacat gggaactgag ttaaggttga
      241 atatttatta gaagaagcca tctggcgtca ggctgtctgt acaggggggc ttatttcttt
      301 agtagtctct cctttttctc tctagctctt cctccctctc tctccgtttc tcatttatgc
      361 accgcatata tgtgaaaagt agaacacaca tcttgacata ttgatttgat tcttgatatt
      421 tatagcaatt aaccctgctc gtgtgattat ccttgtcccc tcaccccata cctctctccc
      481 cactctcgtt ccctgtggcg ggggatgctt ggggctggtc cccacggcgg cagccccacg
      541 gatgcatcag ggctcccacc acagcccctt cctgctcatg ctgttcccta taggatctgg
      601 gcagctacag ctttgcttaa ccatccct
//
LOCUS       KCLA01002010             204 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32675upu ultra-conserved element locus uce-2297,
            sequence.
ACCESSION   KCLA01002010
VERSION     KCLA01002010.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 204)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 204)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32675upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>204
                     /note="ultra-conserved element locus uce-2297"
BASE COUNT           53 a           33 c           34 g           84 t
ORIGIN      
        1 tttttttttt ttcccagtag gaattcctgc agggaaatgg ttaatctatt tttaactaaa
       61 gcttactttt gtaatctatc cagtgcttag agttctgtca ttgatctatg atttatgtga
      121 tttaaaccac ctcttggctg taacattggt ttctatccaa gatgctgagc tgaatactaa
      181 ttacgagatc aaatttatgc tgtt
//
LOCUS       KCLA01002011             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32690upu ultra-conserved element locus uce-2257,
            sequence.
ACCESSION   KCLA01002011
VERSION     KCLA01002011.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32690upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-2257"
BASE COUNT          157 a           56 c           83 g          120 t
ORIGIN      
        1 cattttgaaa taaaaatcct actgtgttta agtaaaaagg taaacagaga ggcaaagaat
       61 tgatgaagaa aaaaactgtt gagaaggttc ttagcaagaa aattgaaaca ggagggaatg
      121 gcatgcaaaa aaaaaagcaa gttcacacac caaagttaga ggatttggga ttaattgaaa
      181 tcctcaagtg gtgcatggta attgactgcc tatttagagc caatagatag gtttccatga
      241 ggttaaggaa gcgaaaaatc ccatacgaag ctagtgagat gttaaattct aattagaagt
      301 gttaattaaa aaaaaacatt tccaatttca tcagtgagag tgcttttgtt gttctgattc
      361 tctttgctac agtgaatcct aagtatccta actaattttg tcccagtatt atttac
//
LOCUS       KCLA01002012             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32706upu ultra-conserved element locus uce-2284,
            sequence.
ACCESSION   KCLA01002012
VERSION     KCLA01002012.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32706upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-2284"
BASE COUNT          216 a          138 c          148 g          188 t
ORIGIN      
        1 acaagaatgg atttcaccac agaatctgct tggtgaagca ccacagcaaa acctgggcca
       61 ctgtcattga ccaagcattg gcagctacat agggaatcat agggccacac agatctgttg
      121 tacaagacaa atgtcagccc tgagcacaag aaacctcagt ccctaccacc tcttccttgc
      181 tgaaacagtt gtggttggga gatgtttaca tatattaagt ttgcaatcag ccttatgtaa
      241 aataccacca gattgtggtc agtggttgta tgcagacttt gtcattttgc ttactgacca
      301 cacattccca ttgatcaatt ctaaattgga ttattgttag gtttaaaagc gcctcaacag
      361 cagaaagtgg cggtggaggc tggcaaagca gagatggata gcagaataaa caggcaaagt
      421 gacaagattt cagactgaat tgatcactgt cagcgagtta gtggtcagct gtctgacctt
      481 tagtgcccaa actaaacatc agaataatgt ttagacaaac acatttgatt tttgaggtaa
      541 tgggtatgtc aactaaatga caaaccttag aaaggtcaaa gggataccca ttttttagac
      601 ttttttcaag aattaatcgt tcatttggga agcagtgtct tttcaagctg gacagaaaga
      661 aagcttcact ttctcgcgtg cactcataag
//
LOCUS       KCLA01002013             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32721upu ultra-conserved element locus uce-1159,
            sequence.
ACCESSION   KCLA01002013
VERSION     KCLA01002013.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32721upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-1159"
BASE COUNT          160 a          108 c          120 g          169 t
ORIGIN      
        1 gcactactag ttccttagca tctgactgct ccctgtattc gcttctttta ccttttaaga
       61 aaagaaagtg tttgaggatc tgttttacat gtagatgaaa caggctctgt gtctttaaat
      121 tctctgaagt taggaggtgg atgtggcaag agtgtgtagt agagggagat tgtgtgagta
      181 ggaagctact attgacattg ttctgttgca gcaattttag atggacaaat tgcagttgag
      241 aaaatttcat gactcggtaa aatgagcaat gatgacatct gtggatgcag gtctgttcat
      301 atctttgcag agcctttagg gaaataaata tctcggaaca ttcggtgaag tgaagctcac
      361 tcaataaatc aacctgacac aataacactt ctggcacatg agctccactt ctcctcagca
      421 ccacctaccc ctctgtgttc ctgtgctacc aaatggtgct ccccacaggc ctctaaatca
      481 aatcagagca cacaaataca gtgagaattt attgggcatt ggttttgttt ggcaaaaaca
      541 ttacttatta gatgaac
//
LOCUS       KCLA01002014             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32737upu ultra-conserved element locus uce-3486,
            sequence.
ACCESSION   KCLA01002014
VERSION     KCLA01002014.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32737upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-3486"
BASE COUNT          230 a          175 c          158 g          267 t
ORIGIN      
        1 aacaagcggt ttgcaacttc tttggcttta attccccacc aaaacatccc ttaaataccc
       61 atgaatttag tgaagattga aatggggtca aaatccctaa tgttgcaaaa atacctgctc
      121 agtccctccc gtgattttgt gggtttttag cagggttttt aatctgtcac taatgcaggg
      181 aagttttcag atcgtgtttt aaaaaaacac agtcgtggcc atggtctctt ccctgccttt
      241 tgatttgctc caaatattta ggaaaggaga gtacactgtg cttttcccaa aagatacaca
      301 atcaggaaat aaaatgagat gttagctctc ttccacctcc ccccgctaat cctttgccat
      361 cccttcaaaa ttactgttga ctaacaagtt gtgtctcttt tctctgaggc agtgggtgca
      421 agacaactac ttgagacaag agaggaacat ttatcctcca ggcttctcat acttactcaa
      481 gcagaaagac tctgcatggg gagaaggttc tttacagcat tccacatttt taatgagctt
      541 ccttgcaaag ggtatgggct ttcccttttt tcagctaaag cttctactca aagagggatt
      601 tgttctcatt aagaagggaa tgttaaggga tgatagttta aggtgttcac gtactgctgt
      661 ttaatcacct ttatgacaaa gattaaactt tactgaaaaa actgcaccat attagccagc
      721 ctcccccaat accagctgga tgtggcgtat gtttttttga tctctcatta agtttcagct
      781 ctgttttacc tgtttgaaga gtcagtgtca ttaacaggga taattattgt
//
LOCUS       KCLA01002015             732 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32753upu ultra-conserved element locus uce-7895,
            sequence.
ACCESSION   KCLA01002015
VERSION     KCLA01002015.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 732)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..732
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32753upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>732
                     /note="ultra-conserved element locus uce-7895"
BASE COUNT          199 a          128 c          127 g          278 t
ORIGIN      
        1 acttttacca gactgaaagg agaccgagaa tgtcttcgcc tgtttcttaa attccgacca
       61 agaaaaacaa atgtagctct tttctgtcaa tatttgatgt ctccgtagat tctgtgttaa
      121 actcttgtac aaagttcctg catgttattg ataacgtgaa accggacttg gtggatttta
      181 atgtcttttt ccttgtttat atagaacatt ttgaagcggc aattaaaata attaaggagg
      241 gtgaagaaat ctttagcatg caacaaagat ttctgcaaaa tgttaatttc tgtcaaataa
      301 gtgaatatat gcacagatgc ctcctgacag aggctgtgat ttctgagtgc tttgcatgcc
      361 aaataacttg tttaccccct caatgtttgc caagtttact gtcaatttac aaataatttc
      421 cattttgctg tttattctgc tgccttttga tggatatgtc ttccagactt ttatcttgca
      481 tgtagacaaa ctaattaata ttttcccttc aggcaaatat ttttttctta gatctaaatg
      541 tgggttagat tcttcttctt ttccatatgc tttgttctgt caatcacttc ccttctatgt
      601 tactaaaaat gtacctctgt ggatgtcgtt tctcgtgttt tacagattta tttcacctac
      661 atctatatga gaacgtgtgt atgcggagag atatttgtta tatatgcctt catgtatgtt
      721 taagcagagg ga
//
LOCUS       KCLA01002016            1172 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32769upu ultra-conserved element locus uce-2246,
            sequence.
ACCESSION   KCLA01002016
VERSION     KCLA01002016.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1172)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1172)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1172
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32769upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1172
                     /note="ultra-conserved element locus uce-2246"
BASE COUNT          311 a          252 c          287 g          322 t
ORIGIN      
        1 aaaggtttgc agcccaggaa aagttttctc ccatgcaaag gcaattttga attgagaccc
       61 catgactggt gcgtgaactt tacagaccct tttacactgt ccaagggtct caaaggacag
      121 ggatggtcca ggatgtttct gcctgaatcc ctgttgctcg tccctcgtta aggtggagga
      181 aatttaaaca aatcatcaga aaatgctgag ggactgcttg tgtttcccct ctttcccact
      241 gcccctcctt gcctgatttc agatgtatct gaaataaccc agccctgccc tcactgggac
      301 tgatctttgg gtggcctgag ccaggaccct tcctctccct cagtcagacc ccgtgtcaaa
      361 acactcctga ctcccgggaa gtcagctctg ctgaatccca aggtttgctg gtgccagtca
      421 gctgctgttt gaacgaagtc ctgaccgcaa aatcaaaagt gggtccaaag aaagctgtaa
      481 acagtgtgca atgagccatt tgaaggcagc tgatgcctca tttggggtga catgttgtgg
      541 ctgatgagtg tggatgatgt ggggttttcg ataagtgcct catcagtatc ctcatcatga
      601 tcgtgttgct cagccacggc gtgtgccctg acttgattgt aattgcctga atctgctcct
      661 gctgctcagg agcgcacagt aatatgcaat aaaacagcaa gaagtgaatg ttaaccatct
      721 gagttctgac atggctgctg gcagttcaag ttttccatta agaatgaaga catctatata
      781 ggcagagaac tatggaaata taattgcggg tttagaataa ttattgtttg tgtatgcaat
      841 aaactccctg tatcaatagc gcgcgatggc catgtacaga tccataggta gatgcgtcta
      901 catacgtctg acacctgtat ataccatgaa tagcggataa ataggatgaa tagatgaata
      961 gtagataaat aaaagcctta ggactggact ttgattcata tttttaggag tagaacccgc
     1021 agtgaaatct atgcgtagtc ttcataaagc ctaataacac gtgtgcatcc ggagaagtaa
     1081 ttgattctta gaggcggtta atctactccc gtaaatgtgc gtgtgtgtgc tcatgcaggt
     1141 gtgtgtgggg gggaagggac acatgcatat gt
//
LOCUS       KCLA01002017             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32785upu ultra-conserved element locus uce-6298,
            sequence.
ACCESSION   KCLA01002017
VERSION     KCLA01002017.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32785upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-6298"
BASE COUNT          222 a          147 c          169 g          256 t
ORIGIN      
        1 gaaaagaaaa gaggaaaaaa gcagaaccgg ccggggactg ggctgggagt agcccaccga
       61 tcccttagtc atagaagtgt acaatagaag ggctttattg tttctcgttg agcagtttat
      121 aagtgacccg gtttatttct gaatgttttg atgacttata gtagatgcaa aagaaacttt
      181 cccgcggtgg tttttttttc tccgtcatgc ttttcttttc aaacagccag atgattttaa
      241 aaagaaaaac acccagaaat gataaatcgc gtcgcatagc taatggctgg agggcgcgtt
      301 taccaattca taatcattta ttcttggtga tgtatgaccc ttactcttaa atctcaaaag
      361 cttctatttg aaggtgtaaa tagctttccc ccaccttgca gtaaacctta ctgcattagc
      421 agtgattgat ctcctgtaca attcgtccca gagtgctatt ttagaggggg aacactggct
      481 tttggagatt aactggggag tctgttacat attaatgaac ctaggagata tactaacgtt
      541 ttggtaattt agttatttgt gtctatagct ttcgccgtta ttttctctta gacccccgcg
      601 gttgttacac atcgaattaa aaagtggtcc ttcagcatca ttttttcagt ggcaactaaa
      661 cgccatttaa tgtgaaaaac aaatgttgac ttgtctcttg aaggaactgt gtttcttggc
      721 aagacatcaa agtggtttaa actctattag gagggtttgt tagttttctt acccagagcc
      781 tacggtaatg caag
//
LOCUS       KCLA01002018             501 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32801upu ultra-conserved element locus uce-6280,
            sequence.
ACCESSION   KCLA01002018
VERSION     KCLA01002018.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 501)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..501
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32801upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>501
                     /note="ultra-conserved element locus uce-6280"
BASE COUNT          189 a           73 c           82 g          157 t
ORIGIN      
        1 ttgttagtta aaaaaaagat caagagttat agatcacacc agtgtatgaa agcagataaa
       61 actgtactac agtaaactcc attaatatat aaatagaaac actaatgaaa atttcactac
      121 tatcaaacaa atcagatcta tgtttcatgc gagaaaatac aatgaagtcc aaatattatg
      181 gggaaaaaag gcatttttgt ttcactaagg tgtacatgtt aaataatcaa aggatttaac
      241 atgacaatat ggttatagat agttatctta agtgccttct gtggtgagga actgaaatta
      301 agaacttgaa caaaacatga tacatgaaag tgcaggttct acaaacactg ggttgcttat
      361 taaaactact ttgatccctc gtttctttga tatcctaggt cttataaaga attcactttc
      421 aggggtaaat ataggtagtt cagagagact ttatgacata ctgtacatac tgcttttcca
      481 gagacacttt ttaattactt a
//
LOCUS       KCLA01002019             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32817upu ultra-conserved element locus uce-5573,
            sequence.
ACCESSION   KCLA01002019
VERSION     KCLA01002019.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-5573"
BASE COUNT          241 a          131 c          146 g          285 t
ORIGIN      
        1 atttccatgt taagtgacta ctttttttta gaaagcagtt ctaatactga agggaatact
       61 gagagcttag gattgttttc ttccaatacc tatttttact tgaagtttct catttgattt
      121 ttcatcttcc cagcatttta aaggttaatt atgctttcct ggcatgtaac ttgctttttg
      181 gatatgatac acagtgccag aaccagctgc tgcagctgta gaataaatgg ccaattttgt
      241 ccattgtaca caaatttgtt acaaataact gagctgggaa tgcattaggc aacattcata
      301 atatataacc cacagctttc gtttttatga tttagtgata tttcaggata tttgtaaatg
      361 tgaagattgt ttctgccata tgtagccact tcattttaat ttgccagtgt cagtaattca
      421 ggagaataaa ggaacatttt gtattgcatg caaacagatc ctcaggtgct tgcgataaaa
      481 cttaatggcc accatcttta cttgtagtca ttgtaagcaa tttcatcaga atgggcaata
      541 ttttttaatt taaaagattc aggagattta gcaactctct attgccatat atatttagaa
      601 tactgatttt gtcagttttg agcttataaa tcttggtcct ttgatctcca gtcattttga
      661 caagacagaa aatagcatct tggagtaaat tggaagagta cagaaatatg gttgggcttt
      721 atattaacaa tgattgctgc agggatgagg ccattatggc tcccatctga cagaatagca
      781 taatttcaca cagaagctac tgg
//
LOCUS       KCLA01002020             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32833upu ultra-conserved element locus uce-1746,
            sequence.
ACCESSION   KCLA01002020
VERSION     KCLA01002020.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-1746"
BASE COUNT          253 a          127 c          126 g          236 t
ORIGIN      
        1 actgcaaaga tattccattt gagaaaatat ttaaataaac tttcttcatc caaaaatgag
       61 atgcagtata tttgcatttt tatttgatga agcctgttcc tgctatcttt gttcttaatt
      121 tggtctcaaa agaattagta gtaagagcaa aaatagtctg taaatatgta tgaaatcaaa
      181 tttagagagt aggctaaaag gtattgactg ccagcagtgc taaacggcag gaggcaaaat
      241 ttcctccata gttttcttct tggctggaaa cacattgcct tccatctaga ttatttaatc
      301 ctcaaaatgc acatcaaagc ttctcatcag gtggtgtatg tctttatagg cagttgaatg
      361 tcaaagatct tgcttaaaga tttttgaaaa atgtaaaaca taatagatcc cagataataa
      421 cacagcagtg aagctcctgt actgttcctt tcagcaaagt gctagtatca taggttgtgg
      481 ctaatcatag tggcaaaagg aagagcaaat tttctacatg agaatttgtg acatccatcc
      541 aacagataga aataaaatga ttgaatcatg ttgctggact aatacaatct tgttaacaat
      601 tcccttctct ctttacactt gtgacttgcc agaacaatag gctatgagtt atctcactcc
      661 tccagaccaa ttagagagtg gaaaaatata ttcaaaatat gtacaaaaca ttttccactt
      721 gtatattctt aacaggatgc ag
//
LOCUS       KCLA01002021             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32848upu ultra-conserved element locus uce-2960,
            sequence.
ACCESSION   KCLA01002021
VERSION     KCLA01002021.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-2960"
BASE COUNT          307 a          189 c          185 g          299 t
ORIGIN      
        1 tttctttagt tttctaatgt aataaaatct ttgggtcctc agctttggag gacacaggta
       61 cctttggggc ttacatggaa agctttctgc tcagcctacc ttgagcagca tcatgactgg
      121 caaactccaa tactggatgc tccacttcac ctcagcaact ccaatgcagg gaactctgca
      181 tataaaccca cgctttcaaa caaaaagaga aaaagcataa taataaaatt cagctgaaat
      241 ttatgccagt caaaccactg ttgcattaat gtttcctgcc catttttgct tggtattaat
      301 taaggcatga tcattggctt agttaaatgt aattcaaaga cagtaattat gatcccatca
      361 cattttctta gactaaaatc agtaatactg cagaaagctg ctcctgcaga actctcgtaa
      421 ttccaagcta cattctgcct tacttcatct agtagccagt tcaggttctc tttacctggt
      481 atggtgtact tcactgaatt gttttgtcag atgctgtcaa gccaacctac tattgttaaa
      541 gaaaatcaaa ctaaatcatt ttggcatgag ccttccagga ataaggcaca gaatatgaag
      601 ggtttgatga aatcaaggat ttgatttcaa tattgtaaaa gactgcctgt caaaaatgta
      661 tcacgttctt tcaaaccatt ttgaataaat aaatgtgttt caaaggatga cagtgccatt
      721 tagataaagt ttgggaagat atttttaaat tataataact cgaggtaaaa caatacttgg
      781 agtgctccta ttgaaaaagg aaaacccctc tgaatgctaa tggtgcacgg aaatttccga
      841 acacttgcat tttctcactt ctccttggtg actaatgaca gagtcagggg caatggtctg
      901 atgctgaggc agtggaggtt tagattggat aaaagagtag tgaggcactg gaataacttt
      961 cccatgagtc atgatccctg
//
LOCUS       KCLA01002022             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32878upu ultra-conserved element locus uce-7202,
            sequence.
ACCESSION   KCLA01002022
VERSION     KCLA01002022.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-7202"
BASE COUNT          282 a          197 c          181 g          267 t
ORIGIN      
        1 aaatcacgga ctagatcctg acctcaggct acatcttaaa aacaccacta aaatcaatag
       61 aatttctcta gatttacaca aatgtaattg acaacagaac tgagactctt atctcaccgt
      121 gtatcatcac tcccagcacc ctctgtgtgc tactgccacc acattgctaa ggaggctaca
      181 tcattggggt gaaatgaatt tcctcacaat ttattacacg atccctgctg aaacacagct
      241 ctcagataaa ggaacagagt ttcctttcag agtcacagat ctctgctctg gtgctgtggc
      301 caccacactt gcatcagttt aaattatttg atgcaattta attagaccaa tcaaaaggtc
      361 cagcagttct tacaactcta ctaaggaaag aggagaggga aaaaaatcag tgctttgttt
      421 acttacaatg ttgctcctga cgcacgaaga cacaccaaaa taactgctgt ttattttaca
      481 agatggaaaa aatattgaac gccctctggt catagaagcc attttctttt gggattacaa
      541 gtgcagagat gaattaggta cacttaggat caatatctgt ttctcttctc ggctcaagat
      601 gggatttgtc aaaattcgag agcagcttct attgagtgtc agctacaaat ccttccagta
      661 ctgagtcata tactcattgg aagttgaaat ataaatggca aagggctttt tcagctacaa
      721 tatccgaggt cagaatggta gatcaccttt cttccttctt tttaatgagc tttggtttga
      781 tgaagtgacc ttgccggtct ggagtctaag gacgtaaaga gtctttacaa gcttggctat
      841 gtcaggttct gtgtagcaca gctccgggaa gcaaaaagca ccacacagta taatggaggt
      901 ttcaggacct ggtcattagc cttgata
//
LOCUS       KCLA01002023             391 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32894upu ultra-conserved element locus uce-6461,
            sequence.
ACCESSION   KCLA01002023
VERSION     KCLA01002023.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 391)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..391
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>391
                     /note="ultra-conserved element locus uce-6461"
BASE COUNT           91 a          129 c          103 g           68 t
ORIGIN      
        1 gccgaccggc gagagccaac ggcacttgga agcgactgaa atcaccgtcg agctttgaca
       61 ccccggcgcc ggccaatcgg caggagcttt tcacctgcca tccccgactc tgccaatggg
      121 agggcggctg cgggcacaga gccctccccg gccaatgggg aaccagctct gccacttagt
      181 taatgatgca gcagtccagg gaagactatc acatgtgagc tggacgcctg ccagcatgga
      241 gacacggaga gcgcaaggta aacaactttc caacgccaaa atgatgacat ttaatcccta
      301 aatgctgcct tcccgtctcg cctcatcctt aacccctttc agctgggggt ggaagcgtct
      361 ggaaggcaca gacctacctg tccccccacc c
//
LOCUS       KCLA01002024             242 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32908upu ultra-conserved element locus uce-4305,
            sequence.
ACCESSION   KCLA01002024
VERSION     KCLA01002024.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32908upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>242
                     /note="ultra-conserved element locus uce-4305"
BASE COUNT           79 a           37 c           41 g           85 t
ORIGIN      
        1 gaagcagagt tgcattagac atgtttttag tgttttcttc tttttgtaaa agctgtaatt
       61 ttcacagttt aggaccaatt taatgtccct ggagttaaag cttttttgta tccgttgtcc
      121 attaggtgaa ttactaagcc aagaatggaa tccatttata atatataaaa taccttaaaa
      181 tttcctacaa agaagaaacc atcaagagcc cattaaatat gaatgcattg agttctgagg
      241 ct
//
LOCUS       KCLA01002025             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32924upu ultra-conserved element locus uce-5980,
            sequence.
ACCESSION   KCLA01002025
VERSION     KCLA01002025.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32924upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-5980"
BASE COUNT          295 a          180 c          170 g          256 t
ORIGIN      
        1 agagttaatc tggaatcctt tgccatttgc aatccaatgg actgctttct tgctaaggaa
       61 agctccaatt gaattagttt tcagctgaat atgtcattaa ggaataagat ctattaatga
      121 cttattaatg cagacagagc caaactggtc tcaggagcaa atcctttaag atttgaagaa
      181 aatacacaac tacttatggg gaatgtggtc tgggtatgac tgatttctgc catcggatgt
      241 agatacatag gcaatattaa ctatactgta cacttatatt cattaccatt cagaacaata
      301 aaaacttccc attttacaat gatatttatt taccactgag cattagctca ggtaaaagaa
      361 ctccaagttc actcctgtat ataatctcca ggtctgtcat tcacatgtag aaaactcagc
      421 tctctattta gcacagtgtt ggtgaaagac agacatttac agggcccctc tgcccttgag
      481 ctgttccatt agtgcatgga aagcaccttg cagcttgtga caagcgcagc agatcggcac
      541 taaatcaaaa atcagtgcca gccagggatc taagccacca tgaaggtcac agccatcagc
      601 tgcatgccat ctcaatccaa acaaaacaca gtggatacag ggggattttc actactcaca
      661 ataggagaca aacacttcat gttagagtaa tcccctgaca gcagtgaaat agataaccaa
      721 ccttttaaat acttttgagt atttaatata actttgaaga tggggaaaag agatgttggt
      781 aatttttggg tgctttttat agtgtaactg aaatgttggc tctgtgccac accaacccaa
      841 aatgttaaca atgaaattct ctcccagagc tgggacatgt atggtttaaa aagctaatga
      901 a
//
LOCUS       KCLA01002026             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32940upu ultra-conserved element locus uce-1381,
            sequence.
ACCESSION   KCLA01002026
VERSION     KCLA01002026.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32940upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-1381"
BASE COUNT          224 a           94 c          116 g          211 t
ORIGIN      
        1 tggcaaccat ttgaatgatc acttatctaa cttcttagtc agaaatttat atccaagaaa
       61 aaccatatct gaccacttta gaggtttgcg tttgagaata gatttgtata aaaacaccag
      121 gccaaaggta tgtatttttc agtaatgtga ggcttgtaaa aattagattt ctaatgaggt
      181 agcatttttt ccccatatga aacactggtg gaaatcacta taaataaata caatgtcagg
      241 ttagaaaaaa tgttgtagtt tcatgttgtt ggtttgcaaa ttgaattttt acataaaatt
      301 tacactaaat ggaatctcat tatacagtga tgaggtccag tatgatccaa atcattaaaa
      361 tcactgtact gcttaatgat tcactaagtg gtactgcagt gccataaatt tagcactagt
      421 ttcatgattc aaaacaccag actgagacac cagcaaatcg tatgtggatc attaaattta
      481 caatgaatgt cagagatgaa ataaggggga aaaaacactt tgagagatag ggataatatg
      541 tgctctaagg tgacatccat caagataaat gatcttacac cacttgtgct tggataataa
      601 tggggggttg tttttttgtt attcttcatt tcataatttc taaag
//
LOCUS       KCLA01002027             924 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32955upu ultra-conserved element locus uce-5873,
            sequence.
ACCESSION   KCLA01002027
VERSION     KCLA01002027.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32955upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>924
                     /note="ultra-conserved element locus uce-5873"
BASE COUNT          341 a          170 c          165 g          248 t
ORIGIN      
        1 tggatggtat tagggatggt attatttcat ctatggcaaa acacagggca tggatggtat
       61 aatttcacgt atggcaaaac gccccactcc tacatatgag aagttttgag tacactgaac
      121 tattgcacat tcatgctcat taacatctat acagtcctag tatgagaagc acttctgtcg
      181 ccctgaaaga aaaatgtgtc atgaagaagc aacacataga cacaggttcc acacctcgga
      241 acacacctct gagatgatgc cacaaagaca cacagcattt ataaaatctt gaaacattag
      301 cttcagcaaa gtagctacaa gaaatgccct cagagataga aaatctaaga aaaatagtac
      361 tggcatctaa ttacagcagt agagtttgct gcttttatct gtaattggac tgtatagtct
      421 ttcattctaa tttactttac atctaaactg tgataatcaa gacaagcaga acagaatggc
      481 ttgtaactgg ctataccacc gacaccagtt aatgcctaat tataacaact aaattaaaga
      541 ggggactgta aggaggttga gtatcagttt gaagcattta atcctgcaga aagaaataga
      601 gattttaaat cctaggtaaa aaaatcaata ttatggctca ttatatcggt attgctaaac
      661 agattaatga aattaagtat tttgtttttt aaagagaagt tttatcatga tgtaaagata
      721 gcctttaaca aaagaccaaa cacagaagga aattcacatt ccagaccatt tataaaccaa
      781 tctaatctgg aaaaaacagc aggtgaaatc aactttccca ggatgtctct cagagctgca
      841 gactgggtac tatgagtgga tttatagcat tctaaaaagt gtacacacca tataaaccag
      901 aaagaccacc cagcatccag gaaa
//
LOCUS       KCLA01002028             232 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32983upu ultra-conserved element locus uce-4580,
            sequence.
ACCESSION   KCLA01002028
VERSION     KCLA01002028.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 232)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 232)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32983upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>232
                     /note="ultra-conserved element locus uce-4580"
BASE COUNT           78 a           43 c           43 g           68 t
ORIGIN      
        1 agagatcagc taataaagaa agtgctggaa gctattatta aattccagct tctgtcagct
       61 taacagcaaa aacttataat gaggaaacca ttaaagttga cataatgaat cagcaatgct
      121 tttccttgct tgctaatttt agagtgcctg gaatatgttt caacacacgt gatttagaaa
      181 atctagtcct actgaatgcc cctgtcctca aaggaaacct gttgtgtgac ag
//
LOCUS       KCLA01002029             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 32999upu ultra-conserved element locus uce-7283,
            sequence.
ACCESSION   KCLA01002029
VERSION     KCLA01002029.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="32999upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-7283"
BASE COUNT          257 a          139 c          143 g          230 t
ORIGIN      
        1 aggtagtata atggcaaaac tgacactact tgatagccgt aaccttattt acattgatgt
       61 tgacagaact catcgcatta taaagcagta ttaataacct gttaattgaa ccaataaatg
      121 ccaccagcca taaaaattat cacttgctac tgcaatgcac taatatgata cttattgaaa
      181 gctgaagaaa taaagttttt tcttaaaata ttggtacaga agctgaagga ataatataaa
      241 gttgaccttt tgatagatgt ctgtttattg atttaaattc accattttgt gaatgacgtt
      301 gaataggtct gttagaagga tgtataataa catgagctaa ataattttta tttctatgtg
      361 tcattataga gaaattgaag caagcttgac ctaagtgtag tgatgcaaaa agaataatag
      421 cacccagtct ggatgttaaa agcagaggaa aacaagagct tcatattaaa gtgccttcta
      481 ggtagctgac atgacgcatc tagtcagatg taaataatga cagacggaaa ctatcatgag
      541 gtctgtgaag catcaacatg ctgccatcat tttctttcta accttgcctt gctagcagct
      601 ctcagactta caggctgaga gatcatttaa aaagcaaatc gtaatgatgc tgcccactgt
      661 aacaacagcc agcaagattg gcatctgttt agctcagttt gggaactcat gttagcagct
      721 atatgttgtc cctgtcatcc caaacagacg ctgtcccttc ctccctggc
//
LOCUS       KCLA01002030             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33029upu ultra-conserved element locus uce-3244,
            sequence.
ACCESSION   KCLA01002030
VERSION     KCLA01002030.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33029upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-3244"
BASE COUNT          200 a          150 c          138 g          222 t
ORIGIN      
        1 tacagctctt atataaagtg tgcctataac agaggtaacg gtttcactct ccagaaccct
       61 ttgcaaaatt cgacagcaga taacggtttg atattcacac aatcagcagc acaaccggca
      121 tgaggtgccc atcagcaaaa tgcaagacac ttgcttgaaa ttaacagagc tctgggtttg
      181 ttatttccct tctgctttat tttccccctt ttttctcctt tccttgttaa agggaaaaac
      241 ttttggccca ggagcaaaaa tgtagtaacc ctcgtgtaag tgttagttta ttgtgcacca
      301 aagaaaatta catccttgag gtcttggaag gcatagttat acccgttttg catatagatt
      361 gtacattact tggggagctg ggtggggaga gagactgtgt tgtacatatt tgttctggct
      421 attgtttatg taggtctgcc tgaatgaagg aacagtgggt atcatttcaa tttctgatgt
      481 caacatcaaa ttacttattt aatttcatgc ctggcgaagc attgtatagc tacacgcaga
      541 atcatttcac ttcatttgtt atgctgtgtt ttcttggcga ttggcttgcc ttccaactga
      601 cagctttaat tacgacatga atttgattgc actgccgagg aattaacata atgcaacaaa
      661 gcatttaagc acccaacctt agacacacaa acacacacag acaccccctc
//
LOCUS       KCLA01002031            1356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33045upu ultra-conserved element locus uce-1806,
            sequence.
ACCESSION   KCLA01002031
VERSION     KCLA01002031.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1356
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33045upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1356
                     /note="ultra-conserved element locus uce-1806"
BASE COUNT          468 a          246 c          224 g          418 t
ORIGIN      
        1 accctaacat gaaaataggg aaaaattact ttttattaag aattttacaa tatatattga
       61 gaagagacag gctgaaggtt ccaaatagac atacaaaacc acccatctcc tgcttgtttt
      121 cgtagttagc tcattacatc tccttggtgg ggtattcccc accagcagaa tgactgcttt
      181 gtgtcatttt tccatccttg agtgcactaa gggtgcatga ttgctgccat tatgtaccta
      241 gacggataca aaagccttct tagttcaaag acgaaaatat gtgaaaccag tggggttttc
      301 acagcttgtc agagcatatt cgtaaaaaag atgagatgaa cctcttaaca ttgtcaaagc
      361 caacattaaa atagtagcct tgacctgaaa agtttgattc tgttttgttc accctgtaca
      421 accaactcga atgtttcaag ctcttaagtt gttgctatat gtttatctac acatgctgtc
      481 agaaataacc ttgttaggaa gctgaagttg gtgtctcagc aaatcagacc catggagtag
      541 gcgttgagtg gcctgtgact cgctttcctt tttctctttc agcaccatca aaaggaaaag
      601 tgagaaaaac agcacaaaca ttagttaaag cctgaacttt gtcccatatc ctacaggaat
      661 aatttcatta caatgcaaac agacagtatc tgtagggatt tttgctttgt ttaaactgtc
      721 taactatata acatagctta tagctctccc aaagatcata tttaataatc cctttaatta
      781 aaagattaat aggaaatgca gggtggttct taggatttac ctgatttacc atcactgaag
      841 acaggttctt ttaaaaatgg ctacaaatgc cttgttcaca aaagacttta ttatctaatg
      901 atgcatactg aaaacataca gaaatctgca tggtccactt tacatgcagc agaacaatct
      961 tcactttaca ataagtgtca actgttttat gcaagtgaca acactttaaa gtcacatctc
     1021 ttaaagaaaa gtttcattta caaaagaaat aaaaggtaaa gaagcaatta ccgcttttaa
     1081 aaagcagctg ctttgttcaa gagtggaagg tttatgcctg tattgaaaga caacatgatc
     1141 acaagtaatg aaaacaatga acaaaatttt agcataaagc agtacacttt caaaatgaca
     1201 tacaaatagt taaaaatttc attatgttgt ctatctatcc tttagatata aggtctttcg
     1261 aatgagattc caacatacgt aattactaaa tgaaaactct tctataagta ttggctctat
     1321 gtcatagtga actgtattta acaaaatgta tacaaa
//
LOCUS       KCLA01002032             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33060upu ultra-conserved element locus uce-6674,
            sequence.
ACCESSION   KCLA01002032
VERSION     KCLA01002032.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33060upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-6674"
BASE COUNT          289 a          165 c          186 g          276 t
ORIGIN      
        1 acctggtcac tctaggatct agttctgtca cacgttagtc atgagcagtc ccactggttt
       61 aatgaggggg tgcctgaaga tgcacacttc agttgccact ggggcaggta ggatcgggtc
      121 ctgtggaagc cacagctgag gcagttagtt gtcaaagaac tgatggaggt gagtgcaccc
      181 atttccagat tctactttcc catgttttac agtgaaaact ggaaagcaga aacatgcttc
      241 atatctgact aaaaataaag gtactcttaa acttctaaaa gacaacattt ttatttgaat
      301 gatatgacag agctgccaca ggagtgttac ctgctataaa gaaagcttaa gaattattac
      361 ctttattaga ccagtgacac tgagctttag ccatacattt ctaacttctg tccctctaca
      421 gagacaattt tcttttctta aataaactgt catgctagtg ttaatatatt gttggctccc
      481 tcatactctg agaatactgc tgatataaaa catgtatatg ttagattggt aatagtatct
      541 ttagtgtagc tgactagaac aaatgtgttt ccctcatggc tgtgctaatg tgataaagga
      601 aaattggctg ttcatcagct tttggctggg taaagacagt agagatggaa ccacattctt
      661 ttttatgcat taataccact gagaactttt cactagttat atttcatgtg ctggcatgtt
      721 gtgcaaagat gttgtaaaac atgagataat gctacaaata acaaagtaga aaagcctgta
      781 tcttttatga tgataacagt caaacaccaa atgacagtaa caggctgtaa aaaatgtgat
      841 gcagaaaaaa aatgctatgt aaccaccata cacttaggct cctgcaaata gggcatcaga
      901 tgtttagaag gctttg
//
LOCUS       KCLA01002033             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33076upu ultra-conserved element locus uce-93,
            sequence.
ACCESSION   KCLA01002033
VERSION     KCLA01002033.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33076upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-93"
BASE COUNT          119 a          146 c          112 g          138 t
ORIGIN      
        1 gccatacctc ccctggcccc attccccact ggaaacgctg taaatctccc cttttacaag
       61 ctcagaacct acagcaggca gttttcccgt tctgcatgtc tttaatccat ttatttccag
      121 ccgcgtatgg ttgagtttgt gccttttttt tttggggtct ggagcagcca agtgcacctc
      181 ggttgcagca ccgtgcttac acgcccggca tccgatgttc ccactctggg atctttgggc
      241 gacaccaggc ccatgttatc taaggaactg ctgagctcat tcatctcctt ttcacggccc
      301 gcttcctttt atttttagcc aaatccgtca ggcctgacag gcgggtaatt tgagccagag
      361 aaagggcaaa gctccaggtc ctttccacaa agcaattctt ctcctccctc ctgggaaggc
      421 tccaaacttg gcctgctcca ggcagatgga tttgttgagt catgtgagat catttacaca
      481 aaaacacagc gaggcagtga aaaggaaaaa aaaaa
//
LOCUS       KCLA01002034             357 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33091upu ultra-conserved element locus uce-5356,
            sequence.
ACCESSION   KCLA01002034
VERSION     KCLA01002034.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 357)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 357)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..357
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33091upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>357
                     /note="ultra-conserved element locus uce-5356"
BASE COUNT           96 a           88 c           53 g          120 t
ORIGIN      
        1 atggacagat tttacacagg gtggtatttt ggacctgaac acctaactct cctggtgagc
       61 ccctcctgag ctcactcatc tgctaccaaa cacgagacag ctgacaggtt tttaagtgat
      121 gaactcctgt gggtcacatt acttaattat acagtacatc cagggatagg cacatgggtc
      181 ttttatggta aatgatatga ctgtcttaaa aactcattaa tatgtcatta accaagcaga
      241 catttactaa ttaaacaatt agcccctctc ttctattcct ttgttccacc cagagatgct
      301 catttactac aatccccact cacatttttt tcccttccct tcttttaatt tcttttt
//
LOCUS       KCLA01002035             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33107upu ultra-conserved element locus uce-6752,
            sequence.
ACCESSION   KCLA01002035
VERSION     KCLA01002035.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33107upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-6752"
BASE COUNT          294 a          208 c          196 g          287 t
ORIGIN      
        1 gttttaataa gtactatata ggaatgaagc ctgtaacagc attgagtaat tctgtaatat
       61 caccacgaat ccattttaaa agctaaacca gatggtagca gaatgcacca tgcccacttt
      121 cacacctttt taaagtgata actatgtgct cattttgtag actctgaact gtaactgctt
      181 tcggtgcagc agtacaataa atcatcacaa caaaggcaga aatttagtgc agtacaagga
      241 gaggaaaaag aattaattat tttcagtatc taatgcagat cataccattg gatgccacag
      301 ttcgcgtgtg attttggaac gtttttgatc tagtcccata ttgtcctgaa aaatggctcg
      361 cttggggcgg taattcgttc catgcaccac tctgcaaagg gtgaaggctt gcctgggact
      421 ctgcggtgga gttcaggcgc tgcgcccagt ccaagtctaa atcttggggc tcttccttca
      481 gtttttctcc ttctttgcca actcgttgat agattcttcc agtgctgtca ttcagtaatc
      541 ttctcatccc tgtaatttgt tttttaattt cccggctttc atctcctaat gaaaacagag
      601 ccatagatat cactgtaaat tagcaaaaat ggtaatgggt agagattagt gattctaggt
      661 gccagtaaaa gttgcagcac aaaaataaat aaaacaaaga acaaaaagtg ctggttgagc
      721 agcgactcat atgtaccaac acagcgatgg ctgacatctc tcatggctga aagaccagct
      781 gaacttggcc ttcttgacac caccattata gctttgatga gcaagattat ttttctccag
      841 aaggaagtaa taacagctac agcagtctca aattttttaa gagactgatc ctattcaggc
      901 actgacatca gcaggtattt ttctctggta aatcctgaac taccaggccc tttcaccagt
      961 tagcaacatg ctgaaggaca gagcc
//
LOCUS       KCLA01002036             998 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33122upu ultra-conserved element locus uce-4844,
            sequence.
ACCESSION   KCLA01002036
VERSION     KCLA01002036.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 998)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>998
                     /note="ultra-conserved element locus uce-4844"
BASE COUNT          317 a          157 c          221 g          303 t
ORIGIN      
        1 ttccattttt acttcagtta cacttttagg aggtggcaac acatgaattc tgaatcactc
       61 tttttggtca gacctccatc tttgaaataa ttcacatgct ggaaggttga atttcagcat
      121 ttttggaaga aaatgcaagt attttaagaa actgggtatt aaaaaattaa taaaatatcc
      181 ttttaagatc acagtaaaag aataagtcag tccaatccat gtaaatttta ttgcaggact
      241 tgagcaacaa tcatttgagt gctgctaaaa tattaattgg gtagaaatga aaggactctg
      301 ctagctgata ggatatcata atcgtagcta cagtagtcga tggtaaatga tgataaatag
      361 cattaggaac cttttagcaa actgtaataa ctatgaggag ggaagcggta tggatttgca
      421 ttatatctga taccctctag taccaagtgg attgccaata ctgcttgttt agcattttct
      481 aggggcaata ggatattgat ttctaactta cactgaacgg ctctattttc accattgaaa
      541 agtattgcag gttgttaaga agaaattgac ttgaagaggc ctgactgctg cccatcatgg
      601 agcaaataaa gcaaaactgc cgaagcatgg tggagcagtg agatggggcc ctcagcaatt
      661 tgttgctatt aatttaccat gctcgacagc aaatcaatcg gcatctactt catctgctgg
      721 agaaaatgct gtccagggca gataaaaggt cctgagtggt acagggaata gactggatta
      781 gccaaactga ggctgcagtt aatgtgtaaa taagtgaaat caaggccgct gttgccgaga
      841 aagctgtttt taattatgtt ggggctttat agttagctat ttaagaaagt agtatggaga
      901 gtaaggagag atttattgct gactgagtta atatatgggc tgtacagcat cctaaccttg
      961 agtctgcttg ctccttaagc tgtagtaaat tatattgg
//
LOCUS       KCLA01002037             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33138upu ultra-conserved element locus uce-2145,
            sequence.
ACCESSION   KCLA01002037
VERSION     KCLA01002037.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-2145"
BASE COUNT          163 a           92 c           88 g          150 t
ORIGIN      
        1 agcttatggg tgattcagtt gcatcagagg cttttagact gatcaattct taatcacaaa
       61 gcgcaaaaat tattctcaga ctcatgtcag tttctttgga cacctttgtt aacaatctgc
      121 ttcgaatcat ttttttaaag aactgcagac actgttttta ttgactcccc acttgtaaaa
      181 tgtttatagc ttgttaattt atatttaccc ctttactttt gcctgcaaat caacatcact
      241 tagcacagtt tggttacact ttgtccaaag gaaattacag aagcctgcta tggggctaaa
      301 atgaaggaaa gctgaggaaa atcaatacac tgatgattaa acagatcgta gcaaattcac
      361 ggctgtaagc tacagcatgg agacatcagt gtgatgccta tctagcagtt aatgtgcttt
      421 cagccagttg aagaaaattt tacaataagg caaaatgtaa caggaaaaaa caagctacta
      481 cagagcaaag ctt
//
LOCUS       KCLA01002038             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33152upu ultra-conserved element locus uce-5114,
            sequence.
ACCESSION   KCLA01002038
VERSION     KCLA01002038.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33152upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-5114"
BASE COUNT          203 a          121 c          116 g          168 t
ORIGIN      
        1 gactatcatc agggaaaaaa acagcagtca ccagtagatg tctgcctgta acaaacctgg
       61 gatgaaaagt ggaagaaatc ccacctttat tagcccaatt atcaagaata cacacagaaa
      121 gatcatctag ctataaggaa caaagcaagt gatctcttcc cattaaaatc aggaggcaga
      181 acctgtgatg tctttgggag ctcagtctaa ataaggtcct atcctctcgt ctctttcaca
      241 ttatgaataa aaacatgaaa ttagttttat gtcagaagaa caacccttaa gacacttgta
      301 acttataatt cctgagctgt ttggcttgtc aggatcaagg aattcacagc ctaagacttc
      361 caggacttta taagttgaga catgctgtgc tagctatgga aaatcaacca tggatttctc
      421 atctgtttcc tgatttatta actacattga gaaagagaaa gttaaaaagt gtactgtatg
      481 tgcacagcgt gctagcaggg aagaagccat tagctctgtt ccataagcca ctaccaatgc
      541 ataaatacag gggttttctt cctgcaaagg catttaggtt gttcttctaa acgaatgctg
      601 caaaactt
//
LOCUS       KCLA01002039             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33168upu ultra-conserved element locus uce-1148,
            sequence.
ACCESSION   KCLA01002039
VERSION     KCLA01002039.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33168upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-1148"
BASE COUNT          236 a          143 c          115 g          182 t
ORIGIN      
        1 acagcactca taattacacg tgcacaaaca tgatggaaat tagtgttact gtagatatca
       61 aaagcaaaca gacctaatta aaggaataac tgcaacaaac ccagatgcaa cccaaaacaa
      121 aaaaggacaa ctccaaacct aatgaatgct ttgaatatta attacagaat tcctaacaat
      181 acagtgggaa agctctcttg gagaattccg tttactgttt aacagtttct gactaatttt
      241 attaacctgt acatctgaga ggatcaaccc cctctgggtt taattagaag aaaattcaat
      301 ttaaatctaa atgtcaacag tggttactaa ttatggcagg gccctggatg agacatccag
      361 tctgtaatca ggcagctctc tgctaacaat taacagtttc tttctgagtt atgagtgcat
      421 taggagtttc ctttttctaa ataaatatga ttcagtgtgg gacatgacta atattacgag
      481 cacctcctgc taggtgcaga catgcagaag agcttgccaa attaaattac agagatttct
      541 caaacatata gctgaataat aaagcgccaa aaaactaggt cagggtcgca agcagccgac
      601 cacagcccct ccccccgaca tgcaaaataa tattcccact atctctgaat agaaatcagc
      661 cttttgttat gccctt
//
LOCUS       KCLA01002040             266 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33182upu ultra-conserved element locus uce-4141,
            sequence.
ACCESSION   KCLA01002040
VERSION     KCLA01002040.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 266)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 266)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..266
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33182upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>266
                     /note="ultra-conserved element locus uce-4141"
BASE COUNT           96 a           57 c           33 g           80 t
ORIGIN      
        1 ttaacataaa acccagagaa agcagagtta ggcaatcttt tacaaacatg acatactaca
       61 atcactgtat aagctggatt agtacttatt accatgctac tagagaatta agctgttttt
      121 agaccaccaa agagctttaa attgcaactt ttgtctctgt aagagaaacc tatatttaaa
      181 acgtctgcta aattcaaatt aacagctaca tcattaactt accatctcac aaaacccccc
      241 gtatttcaac tgctattatg gcattc
//
LOCUS       KCLA01002041             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33198upu ultra-conserved element locus uce-6587,
            sequence.
ACCESSION   KCLA01002041
VERSION     KCLA01002041.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33198upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-6587"
BASE COUNT          208 a          127 c          136 g          209 t
ORIGIN      
        1 acatcttgaa aactaaaaag ctttggggag ccattcccca aagcaatgat tatttggaaa
       61 aactattgtc aacagtgaag agggcagtgg gtttctccct gcatcagcca tttttatacc
      121 aagtttttat atcgagtgct taaaaaaaaa ggcttagcac ataaactctt ctgaaaagtg
      181 aagactaatt tattatcatg tcattattag cacaatcaca aaaagggtca ctggtctttc
      241 ctttaatttc tgtcacaggc tgcaggccgc attatgctga atcaaggata tgggaagata
      301 attaacacag catctatggc aagtttaata ggtgagtgat gagagctaac agttgtgctt
      361 cagaatccat attttaatta ctaccgatgc tatttgaatc aattaaacct gtattgggaa
      421 ggagtaaatc actgacattt catattagag gaaatgtact acaaaatttt tattgatatc
      481 gtttttcaac atttatctgt cctcgatgtt ttagtgcact tagtactttt tatagaggag
      541 ggggagtcac cttccttgac tcatgtggca tgggagaggt gctggtgctc tcctcactaa
      601 ttcatggatc actcagagcc acagactgtt ctggaaggga ccttgaaaga tcatctagtc
      661 caatcccctt gccacagcag
//
LOCUS       KCLA01002042             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33214upu ultra-conserved element locus uce-1291,
            sequence.
ACCESSION   KCLA01002042
VERSION     KCLA01002042.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-1291"
BASE COUNT          265 a          192 c          216 g          296 t
ORIGIN      
        1 aatctgagga catgtgaagt tcgcttggca ggaagattgg cacttacctt tgggcattct
       61 gtgcatggtt ttcctgggca ggttcttaga gcatcagctt ctcctgaatc aaatgctaag
      121 tagcataaaa tacgagccgt tggggtgagc tgcagtttgc cttgtgatca tttgcatagt
      181 cagaatgtgc cttgggtttt cttggtttta ttcttctttc caaactacat ttacctgaag
      241 aagggcttag ttccgagtgc acaacataag cattttctct gcggttgact ttaatcctag
      301 caaaagaatt agcacttaga gcagaaaacc ttctttgggt cctacggggc attagaacat
      361 ctcaggtact ggctgctggt ttaataaaag gataggattt ccatttactt caggcaggct
      421 taatgtattg ttcttgtagt gagacagtca gaatgagtca ggagccaaag aatacacttt
      481 atagacacaa ataatcgtaa attcagaatg tcacctttag gcagaggcat ttttattatt
      541 gttagtggag ctgctgagta ggtttgatgt tttattctct cgagtactaa atgttccaga
      601 gtaccacagc cctatcttta tcaggctcac aaggagggag cacagccaaa cttgcttcct
      661 atacttctct atgattgata gcagatggca tgctttaaaa taaacctatc cattagcagt
      721 cctcagtgtt tttactcaag gcatttacaa ctgtctcaac cagaaaacac actcgctcca
      781 caagacagtt tcagcctgca acagctgtac aggtgcaaat ctttcattaa ctctcaaacc
      841 ccggtgaaat aaaggctgca ctgtatttta tttgtagtgg ggagcttgtt ctgcagagga
      901 ggagtgattc tgttctccct ctgcatgagg cagaggttcg tattaagcag ctgatatgaa
      961 aaaaggagg
//
LOCUS       KCLA01002043             306 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33229upu ultra-conserved element locus uce-4588,
            sequence.
ACCESSION   KCLA01002043
VERSION     KCLA01002043.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 306)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..306
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33229upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>306
                     /note="ultra-conserved element locus uce-4588"
BASE COUNT           94 a           66 c           59 g           87 t
ORIGIN      
        1 caaccgtaac ttcctcgctg gttatgaaag agcatcctct tatcgacatc ttcattcagc
       61 agaaacgctc cgagagatgt atttggcaaa gaaaattgct cctacagatc tcgctgcctc
      121 agaaacatca cttctcggag gaaacactag atcttgtaac tgaaatatct ttaaatcttt
      181 tagatagtcg gtccgcaggg aacggtttaa gaaaggatca aagcttgtcc tttcagcttg
      241 aattattcca ttacagctga atgtgacata attacaaacc atgttggatg tggaatctca
      301 tcagga
//
LOCUS       KCLA01002044             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33245upu ultra-conserved element locus uce-1550,
            sequence.
ACCESSION   KCLA01002044
VERSION     KCLA01002044.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33245upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-1550"
BASE COUNT          305 a          141 c          135 g          276 t
ORIGIN      
        1 gtcctattta tcgttcttaa gagcagagtg gctttgtaaa tttatagatt agcccagtta
       61 aatccaagtt taaaatcagg tttttcctct ttcattatcc taagtttccc taaataccga
      121 tctaagtttc tttaaatcac acgagatacc aatcagaatc acaaaaaaaa atatatctat
      181 ataaattgaa attgtaatga gtcttaccag tgtattgcta gcactttggt tcatttgata
      241 tgaactttgt ttttttaaag taccacatgg taaggctttg aaacttcagt ttgtaaaaaa
      301 aaactgtaac agccttacag cctttgaagt cactactgat ataactctga acagatccat
      361 tcaagttcaa ctaacatcag acaaatgttt agtgtatcag aggaagccac aaaagcaagg
      421 atttcatcaa tatttcacaa cagcctcagg gaaactgtag attgcaatgc tgtagggcag
      481 ctaatggaat tacacacaag ggttttgtac atttaaaata agcagctact aaaaaaatta
      541 cccttcagtt tgatagaaac tgtataaaac tgcagatggg aaacaattaa atagctacca
      601 acatttatcc atgtcagcct gataggtcat ttaataacag gtatttcttt ccgtctttct
      661 ttttttcctg gtagggcaat aataaagatt aacatttatg aaaagtagca taaaatatag
      721 tgcagccaaa tgaataatta aagatgcttc tgaagaattt gtttgctatt gtatggctgc
      781 aaagactgct ctccagtaat gaagttcatt tatattaact acaattataa acagaaagaa
      841 gatgagtatt acgttta
//
LOCUS       KCLA01002045             319 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33260upu ultra-conserved element locus uce-1350,
            sequence.
ACCESSION   KCLA01002045
VERSION     KCLA01002045.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33260upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>319
                     /note="ultra-conserved element locus uce-1350"
BASE COUNT          124 a           48 c           38 g          109 t
ORIGIN      
        1 aattagtagg cacatttcat attagcgtat ttcatgcaat aaagcataaa ttatttaaaa
       61 taacacgacc ttttatcttg caccttttga aggaagcaaa ttaaaaatgt aaattgggag
      121 ctaattaata tgcaaatgta ttcattcgca gttaacaatt agcaattaaa cctgcagtgt
      181 ctacaaagag cacggacaaa attagtaact taatttatca ttaaaaaatg aaaacgtaca
      241 caaaatttta attgactttc aaaatatttc ccctgctttt tccctttatt tttaatacaa
      301 aaaaaatttt tttgaggct
//
LOCUS       KCLA01002046            1157 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33275upu ultra-conserved element locus uce-6580,
            sequence.
ACCESSION   KCLA01002046
VERSION     KCLA01002046.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33275upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1157
                     /note="ultra-conserved element locus uce-6580"
BASE COUNT          315 a          249 c          215 g          378 t
ORIGIN      
        1 tttgtaaaga gtgtaggcaa ctaatcagca gcaaaaagcc acatagctgg agtgttttcc
       61 actgtaggca atatcatact aatttgatgc acacatggat gcttcacaca atctgcaaat
      121 tcatcgctag catcttgaat tagtcatctg aaagattgcc aagtgtttca tattcttttc
      181 atgtgacttt attacaaaac acacacacac tgccttattt ctgccagtag ccagttcagt
      241 gagaattctg tttacaacag ccatggagag aaatctgcac ttatttgcaa ctgccctcca
      301 ctttaacgtg caaaagtcct ggtttgcatt gtgctgctct cttcttacat aatagcatta
      361 agcagcagcc agcagagaaa accagactcg gtgaaaaatg taatcacatt ggtttttgtt
      421 cataatactt atgctgttaa ttaaataccg atttatttct gctttgttcc agttgacaac
      481 atcttctgca tctagttcac aagaaaactg catagtctcc taacttgttt tctctttttt
      541 atctcttttt ccactttcta gtaacggcac agctaacaag atgaatggag ctttggatca
      601 ttcagaccaa ccagacccag atgccattaa gatgtttgtt ggacagattc cccgttcatg
      661 gtcggaaaaa gagttaaaag aactttttga gccttacgga gctgtctacc agattaatgt
      721 tcttcgagac agaagtcaga accctcccca gagtaaaggt agggtagttg ttctctcttt
      781 gtttccaatt tggcagtttt ttccctctga tcttgcttgt cttcaggatt tccaaacagt
      841 ttgcatctgg gctgtctgtt ttgcagcaga ctatggtgag gtatgcagca gtcctaatag
      901 gagaggactt ctgaattcct attgattact ctcttcctcc tcctcttaag tagcaggttg
      961 aatgtctgtt atctggaagc acgtgttcca actatgcaaa aataacaaaa gattgcagtc
     1021 cttgtttgaa tcattattgc caagaaatat ggaaagctga gcggtcactt cctcaggatt
     1081 cgctcatgac aaatacaatt ttctgcttcc ttttgtttcc tctgtttgca ccccaggtgg
     1141 aatcatttta agggtac
//
LOCUS       KCLA01002047             240 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33291upu ultra-conserved element locus uce-66,
            sequence.
ACCESSION   KCLA01002047
VERSION     KCLA01002047.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 240)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 240)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..240
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>240
                     /note="ultra-conserved element locus uce-66"
BASE COUNT           84 a           40 c           28 g           88 t
ORIGIN      
        1 gaaggtaagt ttggctaatt gtcatttcta tacagtagca ctgcacgccg atacatttta
       61 acaatctata aataattgat aattttttgt ctttcatctc ccttcctagt ttgcataaaa
      121 ctaatgactt ggtaaatgtt actcacttca aaatattcta ctgctcctat gaaaattaaa
      181 ctaacactgt aaccttagca aataagatta ttattattct tattgtaagt taaaagaaaa
//
LOCUS       KCLA01002048             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33307upu ultra-conserved element locus uce-5609,
            sequence.
ACCESSION   KCLA01002048
VERSION     KCLA01002048.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-5609"
BASE COUNT          148 a          136 c          142 g          181 t
ORIGIN      
        1 gcccacagac aggaagcagg ctgtcatctg ttacggcaga ggaaccctcg cgtagacgcg
       61 aggtctgatc tggtaagaga ggctcactcg gaggagtcaa ggttgttctc tgtcaatttt
      121 ctctttgccc tatgtaagat gcatttaatt atttcctgct ctctccctct gttcgaatta
      181 atctgctttc tatatattgt tgctcaaatt agaataattc tttaatcagc tgtgccgtgc
      241 ctgccgtact agaccagact ggggacgcca cccctggcat actgacgacg cctgtatttt
      301 atttgctatt gtaatttaaa agtaaaatca gaaatattga tttctacttg actggagaga
      361 tgatttagtt tgaatatcag actcgtctta atcaggtgag aattaattga gttggaggta
      421 ttagatattc agtgatgttc actgcggcgt gagcaatcta cggaaaagct tgctttgtac
      481 ggcgttggaa acctcaaaaa gctcccactc ggcggtgtaa ggcaacccct tccccttcag
      541 cccgcgcctt cttgggctca ctcgatgcat ggattcatag agcggctcag gttggaaggg
      601 accttca
//
LOCUS       KCLA01002049             983 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33322upu ultra-conserved element locus uce-646,
            sequence.
ACCESSION   KCLA01002049
VERSION     KCLA01002049.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33322upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>983
                     /note="ultra-conserved element locus uce-646"
BASE COUNT          326 a          154 c          193 g          310 t
ORIGIN      
        1 ccagatgtga aattcatgca agttgtgcat tttgggggtt aatgggactg ttaagtttca
       61 ccaggcaatt atagatgtat tttcactgtt caatgtgtga tcagcaaaaa ggaaaagact
      121 attaaatcct gccaatgatt tctcacagac tgtttgctga gggatattct tacaccagtc
      181 aaaggctgtt atggagtcca catctttaaa aattcacctt ctcctatcac tgaaagagtg
      241 agaagatact gtattttacg tataatgcag tgatgagcaa ggaaaaaatt gtctcagtct
      301 gaattgtaac agatatttca gaatacatgt gctcattact aagcataata aaatttggca
      361 ttttctattg tcgaagggtt tataaaggct gaatttcttg atttatttaa atagacagat
      421 aggacagagc aggctacaaa aacaagtgct atatactgaa ggcatgtgaa ttacctcctt
      481 ctcaaggata atgcaaatta gaagtatgta aagctttgtc tgcacctggg atctttaatg
      541 aggataaaga aaaatcagac agagattctc ctgggaaaag agaggatcgt tatttgaata
      601 acctgcagtg aattctaatc aatgcaacgt gactttgaaa atgaatgtgg tctttcaacc
      661 cgctgtacat gagccataat attaatcata acttcatggt acagtaaagc ccatgacaaa
      721 ttgttatcca gtggactgat gaaaagacta ttcacagtga gaggagggta agggccatat
      781 atctagtatt ttaaatattt tttttttaaa agcatttgtt tgtacataaa tatacacaca
      841 taaacttaga tatgtgaggg tacgttgtgt gtgtgtgcct cctattcagc ctgaaatatg
      901 taattccttc tattccttca ggagtaaaat gaacaagcag tgtcttaacc tgttacgctt
      961 caaagaatat tatctagtgt tac
//
LOCUS       KCLA01002050            1123 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33336upu ultra-conserved element locus uce-5319,
            sequence.
ACCESSION   KCLA01002050
VERSION     KCLA01002050.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1123)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1123)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1123
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1123
                     /note="ultra-conserved element locus uce-5319"
BASE COUNT          298 a          233 c          231 g          361 t
ORIGIN      
        1 tgattaactc tgctggttgt ctccataaat ggcccctatg agatttgaca ctgccatcac
       61 cctggggttt tgttgcagag atctctcata taataatggc cagagataac accctgatga
      121 atttggcctc caaatctgca gtcacttttg aatttgactt tgaaagaaag actctgacgc
      181 tgaatttgaa ggagatgtga ctagactctt cagacatttg taagttttcc ctatttgtag
      241 attccaataa atgccacaga tttccactga tgaggtgtta ttttagtttt cttcagccta
      301 gggggaggcc tttgtgctgc aaccctgatt cttagttgtt tgtaatcttc tttcatccat
      361 tacctgcttt ctgtgcacac atgggctcct ctgtttgact gctgcagagg cagttggagt
      421 acctggtttc ttctgtccct ctttctctag tccactgcct taaggcatca ccttcctctc
      481 cagacaaata aatgtcttga ggcaagcaga cgtcactctt gtagtctctt ttgcatggga
      541 agttgtcagg cctggtctga cctgcctttc catcaggatt ataaaggtga cagatagtca
      601 attttgggga ttcatgatcc attttagcac agagcttcac cttgcagcta agtaatacgg
      661 ctgtgataaa atcagcccta atcattgcat cttactcagc actgccttgg ctgtaaatat
      721 tgctttcatg tattaaaagg aagaaagaaa aaacttcaaa tggaaagaga ggaaaagaga
      781 gctcttatga gaaaaaagct cttggtgtga ctgaacagat tggtatttcc ttatgctgga
      841 ggctttctga aagaggtagg attcttgatg ttcaaaggga acgttttggg aggctcacct
      901 gaagcatgtc tcattttact aacaaagcta tgtctggact ttgtcctgct tgagcagcta
      961 atggacttca gggaacctcc aactttatta caagtgttaa actctgaaca attctcaaaa
     1021 ccttttcatg ctttcctcta agttcagcct ttagaatcct gaaggaagca tgatgattta
     1081 cttttcctca gaaccattta agattgaaaa ggaagctcat tta
//
LOCUS       KCLA01002051             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33352upu ultra-conserved element locus uce-5806,
            sequence.
ACCESSION   KCLA01002051
VERSION     KCLA01002051.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33352upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-5806"
BASE COUNT          295 a          181 c          162 g          254 t
ORIGIN      
        1 ttctattgta agatagctct caaaacatgt gtaaaagtaa tatttaaact tgaaatttag
       61 tgttcctgat gaaaatatca taaaagtgta cagagctcca gaaccacagg actccttttc
      121 accagttgcc atgagaagac cttgtcctca ttttcacaag caagtaccag acctgacctg
      181 ttagtccatt tatgtaaata ataagtccaa ttcccatagc aagctcctgc taaagctgtg
      241 ccattagagc catcgtgtca tttaggcagt cagtggagaa tcaaagactg cctgtgctgc
      301 agcagcccac tgctatgttt ctaagaaaat gggcacttaa aaaaggaaat gtcacaccac
      361 agtgtgagag ataaacagag gtatatcttt agagcagcag gcagggactg tagaaacact
      421 ctctgtaaat gactttgatc ccctagtgtg atgaatcatg gagtcacaaa tcctttttag
      481 ctaattgcta tcagcttgtg agatttttcc ttccatgttc aatatcaatt ttcagggcca
      541 taggagatag cacttctccc ctgagtctgc tggcgactta ctgctaaaac tgaactagca
      601 ccatttaaca gtttaaagga ggaagtcatt taatatgact ctgccgctag taactaaaag
      661 gaaaaaatat gaagagcaaa tacactgact aataaacctt tttactgtca atcacctccc
      721 tttgaatgct gtcctttcca tacgcacata gtatcagtgc agctatctca aagaaggttt
      781 aattattcaa aagtgctaag ctgggacttg ggaaaaagga gaatgaaatt ttgttatttt
      841 tcagtcctaa tgacttcacc attaaaaact gaaaataaaa caaactcctg aa
//
LOCUS       KCLA01002052             717 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33368upu ultra-conserved element locus uce-3247,
            sequence.
ACCESSION   KCLA01002052
VERSION     KCLA01002052.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 717)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..717
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33368upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>717
                     /note="ultra-conserved element locus uce-3247"
BASE COUNT          216 a          123 c          155 g          223 t
ORIGIN      
        1 ttactaacac agacataatt tcctcatggg gactatagtc ttaaaacaat ttccatggag
       61 aaaaactgga aatacagtgt gactatgcac agtagttaga aagttgactg ttactggagt
      121 aaaaggagtt ggatcggttc tgaaattgct gctcatgcgt tcagtacaac cgcagcatac
      181 acacgtctgc aaacagaaaa gctgtgctac atcagaggag ctctcactat ttgccagagg
      241 tcttaagagg atcttctatt tcattcagta gtaatgccct ttttgttgac aaaagtaaat
      301 tgatgacagg caagagggaa gcatttggtg gaaaaattct gttcaccttg ctcagattga
      361 atttgaccac agaagaggat accagcagtt gcagaaatga tagattattg taatgaccgc
      421 cagagtggcc ttttggcatg tttaaatggc aataaatttc actaggaaga gggcaattta
      481 actactttag ggcagggaga atactctttg tttgatgtgt aaataaattg cggatcatta
      541 acagtgcaca tatcccattc tcagtgcagc tttaaaccag gggaggttat tatttaattt
      601 aatttaaccc ttcactcttt gcttgtttga ggtttgggtt tggttgtggg cttttttact
      661 ccagattttg gtaacgttgg acaacaattt ttcaggaacc cttcttaaat cctaaat
//
LOCUS       KCLA01002053            1072 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33397upu ultra-conserved element locus uce-5053,
            sequence.
ACCESSION   KCLA01002053
VERSION     KCLA01002053.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33397upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1072
                     /note="ultra-conserved element locus uce-5053"
BASE COUNT          290 a          242 c          216 g          324 t
ORIGIN      
        1 gaaagctgcg atccctcaag tcatttgagg gaatggaaag ccagaacgag tgtctaatta
       61 tgtttagttt agccggagca tgcaaaattc ttatctcatt tacctaccca catgcagtta
      121 ctattcccgt aagagacact aaagagaaat tagagctttt tgcaaagacc agtctagaga
      181 gtttcacttt acacaagtgc ttcacaaaac ctcctttgta agcgccatgg aaaagcccag
      241 ggattttttt cactcacatc acagctcact gactgtaaaa gtttttgttt tgctttggga
      301 tttttttgct tttttatttt tagtctttct agccctggct ggtaaggagt tctcactttt
      361 tatcgcttta taagggaaaa acagctccgt ttatcttttg cttattttct ggagcccgca
      421 ggaagcccct gccatcctaa agaaagtcat acataataga gcagctttag accagtaagc
      481 cagtctttcc caattcatca gtcaaagtgt tatgcaagtg gccccctaaa ttgataaatt
      541 cccacagtgc ctgttgaccc agctgccaag tgctcatgca gcaggtgttg ttttcatgac
      601 caccctgaca gtaatacaaa ctgtttagca gttgcattga cctcttagct attaacatcg
      661 atacaggctt cactggggac tcgttttcaa acatgacaga atttctgaag actagaggtc
      721 atgagcaagt ataccatata agaataaatt tgatatgctg ctgagtttaa atcttaaaag
      781 ccgtgagttt tttccacatt attcctgtgt agtaaatctg gagacaagta acgagccttt
      841 ggcacctctc ccaggactga aggtatactt gttaatttta gaagctgtat cggaggagat
      901 gccttctgcg atgccgctga attcggtctg cgacaaggac tgaagcaaca atcttttcct
      961 tgacggtctc cccatgaagg aaaaacaccc caataagcac acgctttggt cactgcccta
     1021 gtgctcggtc cctggtgcgc ggttcctgga ggcttaactt tctttccatg ca
//
LOCUS       KCLA01002054             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33413upu ultra-conserved element locus uce-6288,
            sequence.
ACCESSION   KCLA01002054
VERSION     KCLA01002054.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33413upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-6288"
BASE COUNT          285 a          146 c          192 g          223 t
ORIGIN      
        1 gagttgggct ggaaatggag taagtgggga gttgcagtag gcaggggtag ggaattgaat
       61 aagaattcca taaagaaagt tgatatcctt ccagaggact acaataggct attttaaaag
      121 ctggcattga gagagagaat gagatataca aaatcagagc aagacagtca gaatcctgtg
      181 tgtaaaagcc acaggtgatt cttaacaggc agtaaatcag tggcaggata gaagagactc
      241 cttggtttgg tggcaatagc aatgctttct tttccagtaa gtttgtaagt ggaaaattaa
      301 ctgaaaagta atgcaaagaa taggaagata attgtgaatt aggagccaaa ttatgccagg
      361 cacaactgaa taagttctga cttttcttac tgacagacat gtatattaat agttggcact
      421 tattgaacca aatatgaata ttcatcttca tttatatttc aaggcctttc attcctcaag
      481 gaccacagtg cttttgacca attttcatcc acattactaa aatgacagct ttcactcctg
      541 ggccctgaca gaggtctgca gaattcattg gaggtcctgg gaggagggaa ccagctcccg
      601 ctcccagctg tccacaaaca ctcattaaga gaggcaaata tccagcagaa tctctgtgag
      661 aatttttaat cacgcaaagg ctctgctaat taggtagctg atggggcata gagagcacaa
      721 ggacgaattc tttaaacaaa ggactagaaa ctttaagagc tttaattact tgggcacaga
      781 gttcatttca gaacttggga gcaaattatt ctaataacaa taagaccaag tagcaggcca
      841 tattag
//
LOCUS       KCLA01002055            1034 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33429upu ultra-conserved element locus uce-1362,
            sequence.
ACCESSION   KCLA01002055
VERSION     KCLA01002055.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33429upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1034
                     /note="ultra-conserved element locus uce-1362"
BASE COUNT          287 a          226 c          228 g          293 t
ORIGIN      
        1 aaattaatac tatttaactc tccccacgaa gcctctccac cactaaacac aacatgctac
       61 aacacacagg aaatccccag acggtagcgt ttgactggcg atgacatgcg gtagtttgtg
      121 tacacaaaac actgctggga accaggcata atacagggag aagtgcactc ccagggacta
      181 ccaattgggc agcgctacct ttagtaccgc ctcactcatc gtggtggaaa tcaaacccct
      241 gccaaccggg ggaggctttc tttggtgctg ttctgcccgc actaattata aaagagtaca
      301 gacgcagcct ttttccaaga gcggggagct gggggtgggg gagaagcgtg tgcctcggca
      361 aagagcacca ctatttttta tgctttcaaa ttcttaatcc tgtttggagc tgtcagtggg
      421 ggttaatgga agccttggat aggagaattc caatctggtt ggcagatgga taggttggtt
      481 atagctgcat aactatgtct tgcctgcagg cacaattcag aacactgtta aagcaatata
      541 aagtctctgt caagctgaac catttggatc agtagcaagg agaaataata ataaaaaaag
      601 gagttcattt ctgggccttg tgcatttatg ctagtatgca gaaactgatt aattgtcatc
      661 gtgcgctggt ctgctatacc tcagatttct acttctggag tagattttgc atgctaatat
      721 aatcattctc cctcttgaga cattagcaaa taatcaaatg aaaaacagga tcataattta
      781 ctgagattca ggcaattctc tatgcaaatt tgacttgtta ttgctgctgc ctcgttaatc
      841 tgaatgcctt tgacaaactc ctttgattta tgaactcatg acaactccaa tgtgtatata
      901 ttttgctaga ttgacattat cattaagagt gggtggactg agctcacatg aatggctgat
      961 tttattcgct ggtgtctgct gctcaacagc tgagcatctc cttctcacaa agcccctgag
     1021 cgccaggctc ttcc
//
LOCUS       KCLA01002056            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33445upu ultra-conserved element locus uce-2468,
            sequence.
ACCESSION   KCLA01002056
VERSION     KCLA01002056.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33445upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-2468"
BASE COUNT          270 a          187 c          197 g          367 t
ORIGIN      
        1 cttcattgca aaaacaagtt tagtatgggg aaagattaag aacgaataca tggggtttgc
       61 atgcaggcag ttttaagtgc tcatggcttt tagcataaaa tgtatgcttg ctagattttt
      121 attctgggat ttcttttgct gcaaatgcaa gccagtattc cattctagta caagtgaaag
      181 gcattgtgtc acctactggt tcaccacctg acacttgaat gagaaacaca tttaaatagg
      241 aaaatgtatt tttgagcctt gccatttaag ggtgggaggg taaaaacttg ctattgactg
      301 tgcactgcag cctcacaggg ctacttgtta aaactgcctc acttcccatt gtgatcatac
      361 tcatttcagc agcacgtatg cattcaacac atgatttcta gttatgatgt tacgagggtg
      421 aaatggttgc atctaatcat ctttcatttg tgtgttgatg tggcatttgt attaagtagg
      481 agtaattttt tttctgattt tttttcttgt gtcaccagtg cacctattcc attcttccat
      541 cgctgtgctc ctgtgaacat ttcctgctat gccaagtttg cagaggccct gatcaccttt
      601 gtcagtgaca gtagtgcctt acacaggctg attagtggag ttatgaccag caaagagatt
      661 ataatgggac tttgcttgtt gtcactaggt aattgttttt ctcattacta gctatttgtt
      721 agtactgcat taggagattg ttaacacgct ttaatcacaa tatgagcaaa aatcatgtat
      781 gagagcaata actccttagg aaatggttca gaatgctttt taaaaatttt gtttgacatc
      841 tgggtaactt attgaatgca tatgcattcc attttttccc tttttccact aattatgaga
      901 tagaggatgc atggcagttt gttagccata ttagttttga tatagttaac agagcatccc
      961 cgttttcctg atttttatta taatattccc ctttcccatc tctcatattc atcttctgcc
     1021 a
//
LOCUS       KCLA01002057             207 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33474upu ultra-conserved element locus uce-7930,
            sequence.
ACCESSION   KCLA01002057
VERSION     KCLA01002057.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 207)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 207)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..207
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33474upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>207
                     /note="ultra-conserved element locus uce-7930"
BASE COUNT           59 a           32 c           56 g           60 t
ORIGIN      
        1 gtgggtagaa tggagggggg gggagggggt gccatcatga aaaggaaaag caataaagga
       61 ttccttatga cagcaatttg cacatttact gctctttgat atgttaacta gattttgcaa
      121 aatggaattc tttgtctttt agaggtcctt gggcagtgat agctcacagt cagaacaatg
      181 gttcgcaata ggcctaatgc atcttct
//
LOCUS       KCLA01002058             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33488upu ultra-conserved element locus uce-2138,
            sequence.
ACCESSION   KCLA01002058
VERSION     KCLA01002058.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33488upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-2138"
BASE COUNT          232 a          109 c          145 g          272 t
ORIGIN      
        1 ttatatttta ttatattttg tgatctaaaa tttggctaaa agaaaaaccc tcaaggttga
       61 caaggactgg gattgacaga actatgactc tttgaaatcc ctgttgtcca tttaaatttt
      121 aatgtttcta tcatttgttc ctcagtgtaa attaacagcc atggcagtgt gttgggtttc
      181 ttttctgaag tcaagacttt aaatttaatt caatagccta gatttacagc tattctatat
      241 ttcacaaggc agaatcaata atgtgactga agtgaagaag ataaaaattt atggtatctt
      301 gcaatttaat ggttgaaaag atgcaattgg agagatcata aattgtgaag gagtttatgc
      361 ttcattgctc ctgattcagt gcttgctgtt agaacttgat ttgtgactat tcacaaggtg
      421 tgattaatgg tgtgatcgat gcttgcttca gtgcagtaaa gcagttgtaa tgctcttcat
      481 tagaataaat aaaataaatt gactgaagct ttataaaaac tgtgtaacat ttaaaatcta
      541 aaatgtcaat tttttttcct gttacaattt aggtttcttc aggcagtttc cacctacatc
      601 acatcactca ttgtcattct ttttggatat tatagaaatc catgtgggtt tgggttagct
      661 ttatgcaaag ctcagtgaag gggaaagaaa gagttgaata gggctgacta gagtctaagg
      721 ttttctggta gctgtctttt gccatcctgc aaacatac
//
LOCUS       KCLA01002059             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33504upu ultra-conserved element locus uce-5512,
            sequence.
ACCESSION   KCLA01002059
VERSION     KCLA01002059.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33504upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-5512"
BASE COUNT          214 a          179 c          162 g          205 t
ORIGIN      
        1 tttcccagcc agaatacgtt atttttgtgg gtgcccttat ttaatttcag tcactgatag
       61 ctgtggttat attaaatgaa tttctaagac taatattttt aaggaccatt agtcccttta
      121 aagctcttgc tacatgaata acaaatgtgt cagtcacact gcaaaggata aataaaactc
      181 taaacataaa cttctaaagc cttgctgttt ctctccaaag gaactttaat cagtgccttg
      241 ccagtccagc acttattcct ggctgtcgag taatgcactg agcttgtttc aagggtttag
      301 caaccgttgc aacctaaaaa tcaattatat gaaaacaata aagaaatatt cttattgcac
      361 gccataaaaa aaagatacaa aaggttaagc agagcagccg gcatctgcac actaatgaca
      421 cgattgttat gataggtgtt tgctttaccc tggagtggta acattataat tcatccactg
      481 tggaatgagt gaggacaatt aatgcagtca atgtgtccca cgtgttccct gcagcattaa
      541 caaggcagct ccaggcccct cagcagacac ggggctgaaa attgagcctg ctcccccatt
      601 gaatatgatc ctgattacct ccgcgggggc cacctgctgc ttggtgcctg ctggttttgt
      661 gagctggcct cccccattcg cgggacccca ggggatggac gcctggggcc gcagacagct
      721 gacaccaatc tggcgagctg gggacgaaca atcgcatccc
//
LOCUS       KCLA01002060            1108 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33532upu ultra-conserved element locus uce-6059,
            sequence.
ACCESSION   KCLA01002060
VERSION     KCLA01002060.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33532upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1108
                     /note="ultra-conserved element locus uce-6059"
BASE COUNT          321 a          179 c          218 g          390 t
ORIGIN      
        1 ccaagaacag ttccagtgta atgcatccaa ctcggtagta ttcaaatcca gcaatcatgt
       61 actgttgtcc tgtgcagtgt attgtgagtt acttcagtta ctccatttct ttcatgcagt
      121 ttaatttagt taaagtagta cctgtgtgtc aatggttctt gagttgtagg tgtttcttaa
      181 tgctgtcttt atctcaagtt cgtagctgtt cagcagtgaa aagagatgag ctttgagtcc
      241 tcaattagtc atttatttgc tttcactatt aacatgtatt gtacttacat ttttctaaac
      301 atagctgagt taattaaata ggtaactatg aaactgaaaa actatgtgca gatgctgtaa
      361 cttggaaagt gatttatgag tatatgtatg ttgttttctc ttcactatta atttgcagtt
      421 aaattctaaa tcttcatggt cagttttaaa tggatgatgc gtttttaatg tttcttctct
      481 ccctccaaag aacagcaata gtagtagatt taacaatacc atagactcat gactatgaaa
      541 tcgtggctat ttgtgttaac atgttgttcc tgttgttgat gtgatacaaa gctcctgcaa
      601 agcagctggc acagtccagt gcactggctt ccctcactgg actcggtaag tatgttcctt
      661 atttttgaga gggcttaaag ggggagtgtc actcttgcct tgcatttata gaaattgcat
      721 tatggaacta gattttaatt gcccaggagt atgggttact ttccagtaac tttatcagca
      781 cctttgtttg ttccacaggt gatcctaaag tgggatggtt tttgaagtaa aggactagtc
      841 agtgggagtt agtgtgagaa tcttgccctg attttgaaaa cacatagaag ctttagacaa
      901 attccaaagt atgattgttt tggaagcaca ctacagtctt cagagagagg aaatctattt
      961 tatagttttc tcctgttctg attcatccaa acaagaaggg aaggttgata caagagtaat
     1021 ctggaagtct ataaataaaa gtgtcataat atttgaatta atattttact gaaaaactac
     1081 ataaacacag aggttcccat gttataca
//
LOCUS       KCLA01002061             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33547upu ultra-conserved element locus uce-2308,
            sequence.
ACCESSION   KCLA01002061
VERSION     KCLA01002061.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33547upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-2308"
BASE COUNT          112 a           60 c           73 g           98 t
ORIGIN      
        1 aaagttcttc aggttggggg tttcagcatt tcttttttgt ggctgactga tcggcatcaa
       61 agttgaaaaa tacagataaa agtgtaaatg atgagtcagg ttggcacagt gcaaagttgt
      121 taatatttga caggtctcag tgtcaaagat ttcatagact gtcaaaatat gggcaaacaa
      181 gtccttgggg cagaggaaga gaaatattta cattccctag acacccagta gagtttcatt
      241 tcttttgaca ccttccttct gtactggact caaacataaa agaagtctga caggaatata
      301 tgatgcttca aaagcaaacc atacctagct tccagggaac aat
//
LOCUS       KCLA01002062             281 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33562upu ultra-conserved element locus uce-305,
            sequence.
ACCESSION   KCLA01002062
VERSION     KCLA01002062.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33562upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>281
                     /note="ultra-conserved element locus uce-305"
BASE COUNT           91 a           55 c           60 g           75 t
ORIGIN      
        1 gctgtctatt ccgtataggc aaacatccac ctacccagaa aataattgtg gataattcaa
       61 tgttcagatt tgataatgga tgctcaaata aatatgagaa ttccaagcaa atttgtgcaa
      121 atgaaaaaag atttcctctg acataatggc atggtgcaag gctgtctgta atgagctgta
      181 atttgtctgc aagagcattt taaaggggtt gatccatcca ctggaagacc agcaactgct
      241 ctgagactag aagcaatgag ccagcctgcc tcgtctcaga g
//
LOCUS       KCLA01002063             997 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33578upu ultra-conserved element locus uce-7652,
            sequence.
ACCESSION   KCLA01002063
VERSION     KCLA01002063.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33578upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>997
                     /note="ultra-conserved element locus uce-7652"
BASE COUNT          324 a          173 c          168 g          332 t
ORIGIN      
        1 agcaacctaa tatcttctgt gaaccaacaa ggaagcagac atttaccaca tgctttcaca
       61 ataatgtaat cagaaaacat gttggggaag ggatttacag cagcttgtgc actcctctcc
      121 agacagaaaa gcaaaaagtt ctccctatac ttcattaaag gtttgctggt gccttaattt
      181 taagcacaga acattctgtg acaactgaga gtgttctata tagctgtagt atctgaccct
      241 tctctaagtg ttcagttttt tcaaacttca tttctaaaaa ttctggaact ttatgttttg
      301 gaagacagct gaaaatgcac tgtttacact ctgatgtata ctagcagcca ttcattttct
      361 ctgagatttt ttatgtaagc tccattattg ggaatatgct aatgacatcc actatgatta
      421 ctgattttct ttgaatcgtt attcctctgt gggcaaagca atcagaaagg gagaacagga
      481 gatttacttc ttgcttgtgt gccttcttca accatctgct ctatcctgat tcatttgaat
      541 aaggtctgca gttttagatt ctttactctg gcattctgaa gaattttaaa gcttaaaagg
      601 agttaatagt tatctatcag tatcacaaat gtggtactgc aatgcattct aagagcaagt
      661 tttccttcca atggttacag ggccagatta attttattaa agaaaaaaat tacaatgttc
      721 tttaacagct tcattatttc agacaagtct tttgtgagca catttattat ctgaagtata
      781 gagtataaaa gctgaaagaa aaggaactaa tttataaagc aagaacattt tagaaatgaa
      841 aattgttaat ctattcccct cataaaaaag ggaaatagtg atcaattcaa agaaaacaca
      901 accttataag atgcactgca gttactgcct tcttgtaatt ttacctgggt gaatttctga
      961 agtacattta cacaaggtaa ttttgttcct aagaaag
//
LOCUS       KCLA01002064             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33609upu ultra-conserved element locus uce-6167,
            sequence.
ACCESSION   KCLA01002064
VERSION     KCLA01002064.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33609upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-6167"
BASE COUNT          149 a           96 c           99 g          166 t
ORIGIN      
        1 atgctctagt taaaatctcc gaacactggc acaactctta aattcagcgg agctagtctt
       61 aatttttacc acttggaatg agggaaacat aatcatctcc tattacttca gggaaatcag
      121 tggcatttcc tccttaaatc tttgtttgtt taaatgccgt acagttgcat ttaacattgg
      181 atttggtagg gtaagagttt aatgagaaat tgcatagctg tatttgtaca gagctgtacc
      241 tgatccccac ctcctgtagt gtgagcagtg gtaagtgaac tgtttctgtg ttgttcactc
      301 actctgtcag atcgaaactc agctcaatag cattaaacta gctcccattt gaaagatttg
      361 tcttacaaaa ccctgaaaac tgctctgaac atgcatacat tgattttgtt gctggaatct
      421 cctgagcttt gatgaaaagg agactccaca tgcaggtaat agagggttta cctcttcaat
      481 attaaaaaga gaagattaag gatttttgtt
//
LOCUS       KCLA01002065             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33625upu ultra-conserved element locus uce-1177,
            sequence.
ACCESSION   KCLA01002065
VERSION     KCLA01002065.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33625upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-1177"
BASE COUNT          247 a          203 c          184 g          262 t
ORIGIN      
        1 ttacatgctg aaactaaatc tatgggattt actccaggtc attcgtatca tgggattacc
       61 tttaaactac agacactatg ggaccatcaa aactatttat tcagactgtg tgagtcagtg
      121 tattttcttt gactaatgaa atatcgcttt gttgaagtaa ccatatttca ttcctgccag
      181 tatcagagca gttgtgtgta cattgccaca cgctcaaccc agctaatgca tattccacaa
      241 aatgaggaaa cctgtgcgtc attggatggc tgtttccctc tctgcagttt cacaacccca
      301 aggaggtgcc agagattgca tccctgctcc ctttctctgt aaaacaccgt ccttctgtgg
      361 atcctcctat tccttgtgag gagagctgcc tgtctgattt tggagctctg gcgaaaagcc
      421 cgagctcatt gattgcagat cactgttaat aaagagcatt tgtgatgcag cagtggtgat
      481 acaatctcca cacgccagtt catgatggcc cttcagtctc cacaattaag tcgtccagca
      541 ggcatgcccc ctgttgcagc tgctctgtca atctcatttt gtagtacaaa tgatcttaga
      601 cccagtgttt gacatggggt tttaacacca aagaaggcaa ttctgcaact tcaaatgagc
      661 ctaattggtt gtgcgctcag gcgttcactc aagctgcttc agtccatcag agagagattt
      721 ccaactaatt gaacagctca gaagaaaaag aaccacggaa atcacaatgc actgggccgt
      781 ttgagagggt tttcatgata aaaaccttca aaataaaatt ttggtttttt gttaaatcag
      841 ccacctgtca gtctagaaag gggtttcagt gtacagaaga tcctaatgag atatgt
//
LOCUS       KCLA01002066             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33641upu ultra-conserved element locus uce-7288,
            sequence.
ACCESSION   KCLA01002066
VERSION     KCLA01002066.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33641upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-7288"
BASE COUNT          277 a          140 c          169 g          285 t
ORIGIN      
        1 tttgtaaagt cctaaatgct ttgtttagag agtcttccgg ctacacagaa gctttgacaa
       61 actcttctga caagtgcagg aggagagctg tgtcttgagg tttgatccat tcactagtat
      121 attctccagg agtgtagata attacaacat ttagttaaaa aaggtttgtt taaaagccat
      181 ttttaaagat atttcagtgg aggaaagaga gaagggatga agagaccaat taaccaattt
      241 ttcttggcct ttctctcacg cgcagacaca ttctgtacaa acccctgttt tgatgtatta
      301 ttttaattaa tcccgctctt ttgatttctg cagaaataag gttagcaaat gtaacaatgc
      361 tcgagagttt ctttattgta aaagacacat aatttcaagc atttaataag gtagatttat
      421 tctgggtagt ttagtttgca cattcactca aacagccctc cccaaagaca acattaaaaa
      481 tgtgattagt tagctgccat caataacaca aaataggaaa acactctctg aagggacagc
      541 tttgtggagg gcactgcaca gtatgtagta aaaatatatg gcctaataag tttacatttg
      601 caggctcatt tgttaaaact cttgaatttc taatttgtgt cggaaagata aatggatggg
      661 gcctcagtaa agtgtgagat taatactgat ggatggggat tcagattttt gctagcctct
      721 tacttctgta caaccgagta ggcagtttac agggaaaacc aaatgtaaat aaaaaagagg
      781 acattattta ccttggtcaa ggccaattac tggttatatt gttcttttca actttattgt
      841 ttggatgtaa attatcctta tctaattatt g
//
LOCUS       KCLA01002067             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33657upu ultra-conserved element locus uce-2160,
            sequence.
ACCESSION   KCLA01002067
VERSION     KCLA01002067.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33657upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-2160"
BASE COUNT          135 a          107 c           90 g          142 t
ORIGIN      
        1 agctctgctt actgtagtaa atacaccaaa acacatcatt cccaaacacc acgagcattt
       61 acgctttcca ggcttcgttt ctttggaagg ctggctacca gctcgtatct ctgcaattga
      121 agctggttag aaagctatct acggaagatt tgtagttata ctacacctat ttcttgttgc
      181 actcttctgg ggatgccaga gatggttttc ctcctcctca actttcgtct ccgctgtagt
      241 acagattgtg aatgaacaag agagcagcgt atactagcct ctctgtcaaa accaactcct
      301 gcaacccata aataggtctc attagccttt agaaatagta aacaaatgtt catggctgga
      361 acacagtgga ggtatgtgag cttggattaa gcctgtgaat aaacataagg gagtccttat
      421 gtagctctta tgtaaatgat atcacagtat atcacagttt tacatctcat tcca
//
LOCUS       KCLA01002068             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33672upu ultra-conserved element locus uce-2033,
            sequence.
ACCESSION   KCLA01002068
VERSION     KCLA01002068.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33672upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-2033"
BASE COUNT          147 a           77 c           60 g          141 t
ORIGIN      
        1 acaaaaaagc ctacagtaat agaatatata gcctataaag attttcagaa acacattttt
       61 attaatttga cactgatacg cctccaattc taatatccca accctgcaac attttaaatg
      121 caattaaaag tggctatgaa agagtgtgga cttccttgtg aagtaggaaa tcactcttgt
      181 gattaacatg caaacgagct catgctggca gaatagattg gggttttaaa accccaatta
      241 cttttgtatg attatctatt tacccgtaca cagactattt tcatttttca tctaatacaa
      301 agtcatcctg cttacatttt tagcacagca attaatattt acagtaatta tgacatcaag
      361 caccactgag agtatgccga gtgaatcatt taccgtgttt tttaatatat atgttattca
      421 aataa
//
LOCUS       KCLA01002069            1022 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33688upu ultra-conserved element locus uce-6669,
            sequence.
ACCESSION   KCLA01002069
VERSION     KCLA01002069.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1022)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1022
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33688upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1022
                     /note="ultra-conserved element locus uce-6669"
BASE COUNT          278 a          218 c          190 g          336 t
ORIGIN      
        1 atgctggttg tcttctactt tcacactctt ggtattctat aaaacgtatt gcaaaggctt
       61 gatatggtgt agaaattaaa tgctttttga cagctgctgt caatggtaaa gcacttgtcc
      121 tgcagtggca aaatgtttca attcaagttt ctaaaactgg aggatagcac agcccactga
      181 actgtttcct ttatttgcat gatttgaaaa ggaatacttt ttgtagagag cacaattcac
      241 tccattaaca tagtaatttt caaaacaaga tgtaggtatg aaatggttaa gactacgtag
      301 gtgggcaact aaagtatctg ccacttctaa aagcaaaaat agcatgtacc ttattaaaag
      361 cagcctgata gggtcagtac cccagtctca gaataccacc caagaacaat ttcaatttta
      421 atagctttta ctatgtattt cataagcatg cccattgaaa ttgagtcatc aaagcctccc
      481 agttcctcca agacagattt tagcccgaga gcttggagta attatcccac tggatgttag
      541 cctgtgtagc tatttcaacc tcattcatca tttcaaacag ctacatactc tgcctgctaa
      601 tttcatcaga tggattagcc tctcttactt gtctatcttt ttttcctatt tctggggggt
      661 gaaatattac cttcttcccc tcttttaata agctgagcag gcatgcacca ttgcactgct
      721 tctgactcct atttctttca actcagagaa tgatcttctg ggggaagagc tgagagtaaa
      781 tgtgaaggtg aaaacttggc cacttttacc tgcaggctgg aaccagctgc ttccaacccc
      841 tatatggaaa tacagtcttg agtctatctg aatttatctt cctcactatt tgcagtgtgt
      901 tctgagcagc tctacttgtc tgtgtacctt ctggtttttt tacactgtct tttttggacc
      961 ttgcatgatg ctgtgtctct gttaaagcac ctcattgaac agctgcctcg gtgacaggaa
     1021 ag
//
LOCUS       KCLA01002070             957 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33704upu ultra-conserved element locus uce-2959,
            sequence.
ACCESSION   KCLA01002070
VERSION     KCLA01002070.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33704upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>957
                     /note="ultra-conserved element locus uce-2959"
BASE COUNT          237 a          217 c          258 g          245 t
ORIGIN      
        1 ctcagctcac attgcctttt ctcttcaatt tggggttaaa caaaaggtgc agtccaacct
       61 ggaagcatcc cccacgcctg gccgtggtgt cccagtcgag aagaaaccct gtaccacgcc
      121 aggactggac ccagcctgga gacagggagc aggggacggg tggtggggat cccctctggg
      181 ctcacccgct cccaaccaaa gcgcacaatg agctgtcctt taagaaagca gggggaaacc
      241 taacatggac ccggcaaaag gcagagaatt tgagtagttt aaaaccatta aataggggga
      301 aaacaaatga aatccggagt cctgattacc tttctgtgat tgtttcagac ttgaagcaac
      361 aggccagcgt ggctggtcaa tgccctttga tcgtgtaaat atcctgctat ttcctatttt
      421 aatgttcttc agatttagta cttgtaaata aacacacgca tcaaggagag attaaacatt
      481 tttgctaaag ccagtgtctt gccagtttct gggctgatgc aggtggtggt tttgggaaag
      541 ggccagtccc aggagcagcc actgaatcca tggctatgcc agggtgacat gatgcaaacc
      601 agtattggga tgagccagca tcactggggc tgaggatgtg ggggtcttga gctgtgtctg
      661 tttacacccc ccaaccgttt ccggggactg ctctgtgtgc taatgttgga ttggacagtt
      721 gatgtatgta gggtttaaga gggcttctcc atctgcactt tcatgaatgg cttttgttaa
      781 attgtttgga acagtctgat ttcactcatc acctttcaga gtgcttggag cggtggatca
      841 gatgcagagg agctaaatcc agctagctgc aagcgaagag taaatacctg ctcagctgtg
      901 ctgccactca ttggggtcta aaggagccag ctgaggtttg gacagctctg cttctgc
//
LOCUS       KCLA01002071             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33719upu ultra-conserved element locus uce-6446,
            sequence.
ACCESSION   KCLA01002071
VERSION     KCLA01002071.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33719upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-6446"
BASE COUNT          286 a          136 c          172 g          279 t
ORIGIN      
        1 ttctgtaatg aatattttcc tcagtgttgt tgtttgttgt ttaagatacc tcccagcatc
       61 atttttaacg tcattacaag atgcaggctc tgcagtttgg caaacttaaa ataccgaaca
      121 gctcataaaa gattgtggct cttacggcac tacagatagc agcttctgta ttagatttgt
      181 gtgacttgaa tgctgccttc tctatatctc gaggctgttt catgcaaata tttaagcgta
      241 ggtattctca caaacaagca gccgtaacat ctctgcaact ttgttttgaa agaaagactt
      301 ttgaacacgc aggaaatatt agtacatcaa acaaagtgaa agacaaggta gtttaacttg
      361 ttggtttgtt tgctgaaact ctaaagtaaa tatactgtag ctaaaagtgt tccattttta
      421 tctgcctgct gcagtaatgg ctgtgttact tcagggctta cacttcaata attgatcagg
      481 gtttgtatag caccggctaa gagcaaaaat aagagtgttg ctttgaacaa actgctgcaa
      541 tgttatagca ttaggcacag aaacaagatt ctggaaatat agatatataa aaaacaggaa
      601 aaagatggat aagttggagt ggtaaatact gcttcaggct agaaagtaat gagaattttt
      661 ccatagagag ttttgacctg ctattcaaaa attgtttctt gtcttaataa atcctaaaag
      721 tgtaatttac ttgcaaaagg gaaagaacaa aggcaccaaa attcttttga taacaacact
      781 tgttaaggtt gataagttgg gtttcaaatg tgtgaagaaa aatgtgtgac agtttgtttt
      841 aaggtgacaa cctaagtgtt cagatacttc cat
//
LOCUS       KCLA01002072             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33735upu ultra-conserved element locus uce-3481,
            sequence.
ACCESSION   KCLA01002072
VERSION     KCLA01002072.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33735upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-3481"
BASE COUNT          260 a          151 c          141 g          234 t
ORIGIN      
        1 ttaaccacat gcctgcatgt tatattattt tcttaataat tttttggtac aaattcctat
       61 gacaaatgga ctataagaga ctattaacac tgaaatgggg tattgtgacc ttaaatcagt
      121 gcatgtacaa ctgagagata ctgcatgaaa ggaattttac tgaatgcaag aatgcaattg
      181 tgcttactaa acagatactg aactatgtaa taaagaacta aagcagctgt tcagtgctac
      241 ctctttttaa aatttatacc aattgtgctc tctgctattt gcacaactga tctgataaat
      301 aagcagttaa gtgtcacaaa ggcagtctgt cttggatttg ttctcaattg cttaaaaaat
      361 aaattatgtc ataagggaca agtgacaagg gcccaggagg ctgaggaaaa ctacctcata
      421 aaacgggagc tggccaccat caaacagcag agtgatgagg ccacttctaa actggagcaa
      481 gctgagaata ccatcaggga gctccaacag cagcagcaat gggtaaggag tctgccagca
      541 catcatctca tctttttcac tcacatttta ttcttcctca tcatgacatg atgtctgtgc
      601 tgtccctgtg agtgcttgtt cattgtgatt tgcattttta aaattacact aattggacta
      661 agtgatattt tggtctcttt ttactgaatg atcattcata aacctggata aatgtagctt
      721 attagttaaa acacaccaag tcaaaaatgc ccaacctaga aacccatgat caccaaatac
      781 taacaa
//
LOCUS       KCLA01002073             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33750upu ultra-conserved element locus uce-7138,
            sequence.
ACCESSION   KCLA01002073
VERSION     KCLA01002073.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33750upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-7138"
BASE COUNT          284 a          226 c          191 g          260 t
ORIGIN      
        1 aaggacctac tttgaaacta ctcattagta acagccacgt ttgcaatatt aacctggatg
       61 cggctgttta ttaagatctt ttaaggggtt tagaatgaag acacactgcc ggtgtacagg
      121 gagcacagaa ggggtaattt aaaacccatg tttttcctcc ccctcaccga aaacatgccc
      181 agcattgtgc agctgtgctg ccagcttcat cactccctcc atctccactc ttgctaatta
      241 aaaggttgat cacagaacaa tgctcttctc attaatttcg gctttctgat tgggcaggat
      301 tcccgctcgc tccgcctgat cttttccaca ctgctgaagt taatgtgaca ggagcccgaa
      361 gatggattac ccgctgccat attgcccatc acctccaatc agcagctatc tgggtaaact
      421 gattgttcta atttgctctc attattttta caatatcagg agaaaataac gcacacagct
      481 cactgtcaaa gccatgaaaa tcagccatta gttaaaccca gacactgagt ggctttatta
      541 gcagcactgc agtttattga tgcagctttg gtaaactaag atcctacccg tcctctttaa
      601 acacgcttct ttaggcatat ttaagttgaa agaaaatatt tattagaata cttctggaca
      661 cagtcgctgt ctcagactgt gattttgatg cgctggcaga caacgaagat taagaacaat
      721 ggagaactga cttccacgca gagaagggca aaacacgcag cattatccac acggcaacct
      781 gcctgcacat ctcagctaca gtttaaataa aaatcatctc agcgctaaga tgggaggcaa
      841 ggatgtaatt acacctcaaa tccccacaaa atatggtgct accataaaga caaaggcagc
      901 acaggcacgg ttgtgtgaga tgtattacaa ggtcaacaat ttaggttcgg ggggtttttt
      961 t
//
LOCUS       KCLA01002074             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33764upu ultra-conserved element locus uce-5600,
            sequence.
ACCESSION   KCLA01002074
VERSION     KCLA01002074.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33764upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-5600"
BASE COUNT          171 a          108 c           97 g          215 t
ORIGIN      
        1 ttttcctgca ctgcctgatg catatttgtc atgattcatt attcctaaca gctatatcaa
       61 gcgttgcaat tacggcacgg tacagattta agcttatcat atttctagat tggaaagaga
      121 aaaataatat attaagtgct tgtgatatct ttatgtataa gtttaagaat cattaaatag
      181 ctgtcactat tccttcctcc tcagcatcaa ttactccact ctggttttac ttactccact
      241 ctgtataatg agtccctaga gcacgtttca ttgcaggaga atgaacacat tcttcacttg
      301 cggtcagtga gatgtggtta atttgaaatc acttaaacta ttatatctgt caagcatggt
      361 tattttattt tcaattcaca ttagtgtttt agtatgcatg tcagttactg ggttaaactg
      421 gcagattaat ttctaagcat tctgttgtaa tgctcttcat cactgtcttt acatgtaggc
      481 tcctgttgca agttcgaatg cttccattag aatttacttc agagaaatct acatttaata
      541 tagtcacgtg ataaacaata cactttactg aatgaagcct ggtaggatca g
//
LOCUS       KCLA01002075             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33780upu ultra-conserved element locus uce-5218,
            sequence.
ACCESSION   KCLA01002075
VERSION     KCLA01002075.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33780upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-5218"
BASE COUNT          271 a          166 c          163 g          244 t
ORIGIN      
        1 tttttggcaa aggcataatg gtagcaagag ctgcactgga aaaagagata cttaacatcc
       61 actaaattag gagccatgtt gtggtttaca gaagacagtt ttatgtttat tcaaatcaat
      121 ctacaagtac agtttcacag aataaaagcc agcagctttg gtaggattag aaagagagaa
      181 ggggactttt atgtgcgaaa gaaccagccc tgttccttac tctgatgctt gataatttta
      241 aaaaatgtga cagctaaaac ccactggcac atgctgcaaa gaatgatgtg ataaaataat
      301 gctactcatc ttcaaggctg tcagttcagc aatcagtact tctattcatc tctgtggcct
      361 gctaactcag tgctaccatg tgatagataa accctaatcc aagtgacagt gttcaaatca
      421 gaactgattt gattgttcac atatgatacc acaggacacc agaaacctaa agagtttata
      481 aaaatgcctg gatgtctcat gtaggcacac ttcccctcag aatctcttgc agtgtaggat
      541 acaccagctc ttaaaccttg ggtaatttgt aggtcatgaa aatgctttgg tggcacagtc
      601 agttcttata gtctaactgt agctggaaca aggaatgctc aaaaataaaa tgtggtctag
      661 accttgtgaa acctacctgt tctgctttca gttctccttt acaggaagta caatcctttt
      721 ctttctctgc aaagacaaga cttgctcttg aagagatcaa acatgaacac atttgcttcc
      781 atgcataaag tggatgagga gtaattttat ggcacataca tcagcatctc aaaagtcatt
      841 cttg
//
LOCUS       KCLA01002076             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33795upu ultra-conserved element locus uce-5690,
            sequence.
ACCESSION   KCLA01002076
VERSION     KCLA01002076.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33795upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-5690"
BASE COUNT          254 a          162 c          196 g          276 t
ORIGIN      
        1 cgttttgccc ttaggactga atttcccaac tgactattct tttagactgt cttttgatta
       61 acaatctgtt tgtagcaggc tagggccaga gaggcagcgt ataccctact gttcaaatct
      121 gtggcaaaat attctaggga gagctactta ataaaaacca acttgctcca atagtcattg
      181 agaaatacct caactgttag caatcaatcg agggctgagt tgggggaaaa atatacaaaa
      241 ggacatcaaa gaggttctca ttcccagtct attgctctat ttaagggtcc tataatttgg
      301 taaggttgtg tgctaaataa tttgtaagcc ttcagaacat ccaggttatt gtttgtggac
      361 agatggtgca tcacatttta ttgcttattc cttctgtggt ttctcatatg caggactgat
      421 gtgcactctg aagtctttgt ttccttgcta aaatctctaa tctaaaacag gcaatcaagc
      481 acacagacag tgcttcagaa agcataatca tagttttaaa gggggaaaaa aacatttcgg
      541 ctgcagttag gcagcagatg tgttccttga aaatgtaaaa ggttatcaga agtattaaaa
      601 taggaaaata gatacaaatt tgggagcatt ggatagaatg tgtatttatt tcagtattgc
      661 agggtaggtg tgccttttcc tagactacct gctttgtatc tggctctctg tggagctgat
      721 gtagtgaaag ccttcggaga ctggcttttg cttccacctt tcccctgaga ttggcagtct
      781 ttgtctttta caagcaagga gcagccgtgt tgtgatcctg gaaccgctgc tgccccgaag
      841 agttaaatca tgttgatata caggaaggaa atggaataga ctaactct
//
LOCUS       KCLA01002077             347 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33810upu ultra-conserved element locus uce-6843,
            sequence.
ACCESSION   KCLA01002077
VERSION     KCLA01002077.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 347)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 347)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..347
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33810upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>347
                     /note="ultra-conserved element locus uce-6843"
BASE COUNT           92 a           70 c           68 g          117 t
ORIGIN      
        1 cataaaatca ttaatttcta gagcgatggg aatagggtct aaaaatagat ccctgctttc
       61 aactcctgag ttctgctctg gtttaactac tggtagcatt gtagcctaga tgcaagaaag
      121 gctctggaga gactccttcc ccttttcccc agatatattt agggtactaa ctagcatagt
      181 taggatatta ttttcctttg gttttgtcag tagcatgttt gaaataaatt ttattaagtg
      241 gtagtgtatg taacattgca ttgtgggtag cagtttcctg ccttaacctc gccacatcct
      301 cagctgttac acgagaccgc cttcccatat tttcttcatg ggaaaaa
//
LOCUS       KCLA01002078             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33826upu ultra-conserved element locus uce-587,
            sequence.
ACCESSION   KCLA01002078
VERSION     KCLA01002078.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33826upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-587"
BASE COUNT          199 a          157 c          125 g          211 t
ORIGIN      
        1 ttcgatcctg acagcttatt cctagtcagc agccctcagc aaagaattat tacatcttat
       61 gattattttt tatttacata cacatcacgc tgacaaaatg aggtttatgc tttcttcact
      121 tctcagtttc tagctgacta tcattttctt ttaagattaa ataagtaatt tattgaactg
      181 tgccatcaag tatttatcag gaaattgctg ggtaatttca accgtatctt tttttaaagc
      241 ataaatctgc atccaaggcc tccagtaact ttgtgcgact ctgcaccatt aatttcttcc
      301 agagtgacat tctgatgtga gctgaacaga tggaattgca ggattgttct agcaaattta
      361 tcataaaaaa tgcatccgac acctgtgtaa tttgcctaat cattttccta ataagctccc
      421 accattaatt atgcacgatt tccacaatgc aatcaagata aaagtaaatc tgatgactta
      481 atacccttca aaataattgg ttcacccaac acaaggcctt ctttgctctc cacagccatc
      541 gcagttaatt agaagaaggg tgcaccctgt aggagtcagc aggacggagg ccgatcgcgt
      601 ggtgggaggc agccctgctg gttttttggg caggattcaa ggacattaac tcctgaaaga
      661 gaggaacggg cgccaccgct cccccacctc tc
//
LOCUS       KCLA01002079             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33842upu ultra-conserved element locus uce-6344,
            sequence.
ACCESSION   KCLA01002079
VERSION     KCLA01002079.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33842upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-6344"
BASE COUNT          295 a          155 c          140 g          233 t
ORIGIN      
        1 ttatcaccac ttgggtatct tctgtagctg acactttact cctctagatc tctactagag
       61 tttcatcagc acaaaagacc aaagcagcaa taattcagaa gaatcaggat atctagcccg
      121 ttatactcag agctttattt tctctctaat attttcagag tgtttggggg agtaatttca
      181 aacagtcaag tcagagaatt gatttttgtg acctcacata ttgtaacaga aaattataac
      241 aggaaataaa ccattaagcg ataaacaagg aaacatggat acaattactt tcacaacata
      301 attttatcca tgctagtttt gaaaatgaag agatagtact gactggaaca cctcaattct
      361 gaatgcaaac tgtacaatct attatattaa acaaagtcaa aagcaatgtg aaagatcttg
      421 aatctattca aggcatgcac ctcattacag acttagcaaa ttaaaacaca aataggatta
      481 gaaaagaata atgtaacaat ctcccactat ggtccctgga gcattaagtc ataaattggg
      541 tttgcattaa attgtgcctg cagtattgaa ttcaggaaaa gagctatagg ctgaagacaa
      601 accttcctag gcgagctaac ttcggtactg ctatgtgttt tcataagcac acaatacatt
      661 tgctggaatc taaaaaggca cgttcaaaaa caagcactta ctatcttaat tagaaaatgc
      721 agatgtggtg tagaaatccc tggctatacc acagccaaaa gccacagcca tttgaagttg
      781 tagcttcacc cggaatcgtt taaacgtaga agttaagcac ttt
//
LOCUS       KCLA01002080             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33858upu ultra-conserved element locus uce-724,
            sequence.
ACCESSION   KCLA01002080
VERSION     KCLA01002080.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33858upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-724"
BASE COUNT          225 a          116 c          122 g          232 t
ORIGIN      
        1 tttttaaata gctgaaataa aaaatgtaag tacatgtata aaaaaatgtt aaaatctaga
       61 aaaaaaattg tagaagaata acaataatga acttaatatg catgttttgc cttcacgctt
      121 cttttacttt gttaaatagc ctatgtggaa taaaatttac ttctccatta aaaaaaaaat
      181 aaatccctat tccattctgt tttggtttgt ggagttctgt tgtcatttta tcctaaagtg
      241 ttgtttcctc acatttgcat ctaccagcct ttttaatgtg atattccatt taaactgcct
      301 tttaattgta tgtgctgcct tggcagaaca tgactgatgt actagcgtta attagggctc
      361 cagtcagcag cctatgccag ctggaaactg agaaacaagc gtaaattatt ctgtcatcaa
      421 tcagctcaaa aatgtttgaa tcactaatta gtttgcaatt tgggtgacag tttatctgac
      481 gcaggcagtg tcagaaactt cagatcttag atgaataatt tgccagcaac aagcacatat
      541 tccctgcttt taaatacatg aaggtttatc tgcatgttga aaggtggctc agcagtcttc
      601 attaacttcc aactgaggct atgtaaatca ggaatcagtg tgaggcactt cagtctgtgg
      661 tggcttagca gatgatattt agaaaaagaa aacct
//
LOCUS       KCLA01002081             505 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33874upu ultra-conserved element locus uce-6261,
            sequence.
ACCESSION   KCLA01002081
VERSION     KCLA01002081.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 505)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..505
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33874upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>505
                     /note="ultra-conserved element locus uce-6261"
BASE COUNT          102 a          138 c          116 g          149 t
ORIGIN      
        1 ggaaggaagg aaggaaagaa ggaaggaggc cgggctgatt agcatgcagc agcgctcgca
       61 agcccggctc cattgtttta acacctcccc tctcctccgc gccaatctgt caccgttcag
      121 caggcgaacg ctgctgcctc gaatgctgct cttctcaaat gagacggata attagctgcc
      181 ccgcacgaat ggcgcactct tctcacccct gattgctatc accttcttgc tcctggcagt
      241 tttgacacct cgtaatcagc ctgctgcttt ttctcttttc tttccctatt tctgattttt
      301 ttctccccct tccttctttc tttttttttt ttaatgcaat cccagttgcc atttggattg
      361 agactcctct gttgagttaa ccttgtatga ttgcggggga aaggggaata tacaatcggg
      421 aggaatagaa atcgcctcct ctgagtctca tctgctgagt gaaccacggg tggggggaga
      481 agcatctcgg cttgatcctc caatg
//
LOCUS       KCLA01002082             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33888upu ultra-conserved element locus uce-7053,
            sequence.
ACCESSION   KCLA01002082
VERSION     KCLA01002082.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33888upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-7053"
BASE COUNT          305 a          162 c          156 g          342 t
ORIGIN      
        1 ttatgcagac cagaacagag cactcgtgtt taacaaacag ctttgaattc taatattctg
       61 caatatacat agtgtaggta caatttgtag tcattatggt gcgttaggaa agttattaaa
      121 attcttaaac ttgttgaggc tttccacaat accttcccca gattttaatt ggttttatct
      181 agttccataa gagcgctctt taaaacaaat caaagtgcct taaatcacgt gtcttaccca
      241 cgcagatatt ctttctataa tctggcaagt tttcctaaga actgaaggtt ctcaatgatg
      301 aattaaaaga cttggcagaa gataatttat gtgccttttg atgggtttgg tttcaaaatg
      361 acaaaatagc aatgttttgt actagaaggg ttaaatctta atctcagagg tttacaaagc
      421 tgctagtcgc agtctcctta aaatttaata tacctcgtta atgcttaact tgcaaacact
      481 gaaggatttt tatgattata atcatgtgtt acagcaccta gtactgtttc taagcagcat
      541 actaatcagc ttaatgagat attactgcac tttttgttga ctaaagcaaa atccctttta
      601 ttgttctaaa gcttgtcctt tactttgttt tttcccaaaa cattatcttg ttttattgta
      661 caccagtaaa tatcatacca tcttttttgt caagtcataa aactgtattt cccattgtag
      721 aatgtgtaat acattgactc tggttaacag aactggaagt tacaaattga ttcctggttt
      781 gggtttttgc tgactctcct aacaggaatg ggcaagacgc ataacatttc tctttccata
      841 gatttaaatg tgtaaacagg tgtaatttca taaaaagaaa gacagggaag atggtaaaag
      901 cctttgctcc tttcctaata ataacatttt gaacttgtag catattttaa aatagtcatt
      961 aatag
//
LOCUS       KCLA01002083             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33904upu ultra-conserved element locus uce-6068,
            sequence.
ACCESSION   KCLA01002083
VERSION     KCLA01002083.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33904upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-6068"
BASE COUNT          178 a          141 c          122 g          163 t
ORIGIN      
        1 aaaaaagagc ctgggcagtc atttgaatcg gtgagtgaca ggctgggcca gctctccgta
       61 tacattaata aattagaatt ttaattgtgt ctctgactgc aggagctgct ccagtacttt
      121 aatacgtacc aacaattggc tatgttatgg aatctgcgat gtggccttca ctgttgaccc
      181 ctgcaacaca attcccagtc tgactacgga aactgtttgg tttgatcctt tcaacttatt
      241 tgaatcctga caaataagct cacagctgaa aggtcaacac agtcatattt catcctctgg
      301 agctattctt gagacatctg cacaacaaag cacttctttt agtacctgac actggaccta
      361 gccagcacaa tctctcatta aaaatgtccc cagtggaaga gtctattaaa aagcatatgg
      421 atcaggcacg gatttaccaa atacagtact tttcaaagcg ttaccgtagc gctctggatg
      481 acggcactac gctgcccata aaacgtatat ttgcccaatg acagaatgct tcatactttc
      541 caaaagaata atagctcggc tgtaaagcac gaggtgttgt ccagcagcct gggagccagg
      601 aact
//
LOCUS       KCLA01002084             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33919upu ultra-conserved element locus uce-1889,
            sequence.
ACCESSION   KCLA01002084
VERSION     KCLA01002084.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33919upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-1889"
BASE COUNT          163 a          105 c          114 g          126 t
ORIGIN      
        1 ctcttttttt tgtaaatcaa caaaacgcag cgccaggcag catgtgcctc attttatcaa
       61 atggtacaca gcttggtaat ggcctcccca gataatttga actgatctat ggtgatgacc
      121 agggggacgg caatgattgt catgttagta aaaaaaatca aaacaatcat gttacgtcag
      181 ttctaccatt aaaagacttg cttctctgca aatttttgcg ctcagtaatt aatactctag
      241 ggcttgcagt ttccaagctg gtactccagg cacagagatg ccactcacct gataattatt
      301 tcaggaaacc atgcacgaat gaatgtgatt gacaaatgca gcattgctgt aattgcctca
      361 agcagagtca ctgagaaaag gagaaagaaa gaggaaagtt aactagttat gtgcttacct
      421 aggagactgc gagcacaaag ggagggaaaa ccgattcatg gcaatgtaat tcaccgccgc
      481 gcgcaccgag gagcgacata ggaactga
//
LOCUS       KCLA01002085             230 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33934upu ultra-conserved element locus uce-4095,
            sequence.
ACCESSION   KCLA01002085
VERSION     KCLA01002085.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 230)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 230)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..230
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33934upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>230
                     /note="ultra-conserved element locus uce-4095"
BASE COUNT           76 a           39 c           45 g           70 t
ORIGIN      
        1 aaagcatact catgcaatta ttaagaactg gctgaggtaa gaagtaaagc ttaagacacc
       61 ttcatcatta gctgctagtg gtggagatca gtgatcctac tacaggatta cagatggaag
      121 gagtgctact gttgtttaat tgttcattaa tgcttgtaaa ataacatagc agcaataaca
      181 tgttttactg cttctttccc aaagtaaaac acaattggat ctgcttgtca
//
LOCUS       KCLA01002086             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33949upu ultra-conserved element locus uce-7574,
            sequence.
ACCESSION   KCLA01002086
VERSION     KCLA01002086.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33949upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-7574"
BASE COUNT          283 a          210 c          189 g          279 t
ORIGIN      
        1 atcaaaaaaa gcttatttta tgaacccgta aatctcctgg aaataaatgc tttcttcatc
       61 ttcctgtgtt ttaataaaac ttcctttttt ttactcactc aattacaata tcactatcag
      121 ttcaaattac aggtcaaaga tacggggctt aatgtatgta cagccagttc tctcctccta
      181 ataacctgtc attcccggga tttgaatgtc agaacacagc ctgccgcagt aatgctaccc
      241 ggcagcacgg tgatgaaaac tttggacaaa tcatgaagaa cattccagat ccaaatcatc
      301 agaaggttag tggggagagc ctttcatccc gcgctgaccc cttgatctga caagtgacac
      361 ctacaaaatg aacagctctc cagcttaaat tgtttaactg tagcctgatc agttttatta
      421 tcttgctaat ccggatatca gccgtttcat cagaatggaa gatatgcata tcatgaatta
      481 ttttgacacc aagacctttt aatttttgcc agcaatattt cactacacca atcagggccg
      541 gcagtcggtg atgctgctcg cctcctggga tgtcagagga cagtgcactc ctgacagcac
      601 caaatcatct gggagctgta acgagctatt gctgcaatta ttattatctc ctgtagtcat
      661 gcatttcatt acagcacagg cagacagagg tttcactttt gggccggtct tatttaggaa
      721 tctctgccat tttatgggct gtagggctcc acagagtaat ttcttttctc ctcagtagac
      781 agggctaggt gaatttctaa taaaaacaaa acaccagcta ggtgctgtag aaggagggag
      841 cacaatacag tacattaacc agcagtgaaa cagcttaaat ggcccacttg tagtttatga
      901 aagcagtggt taatcagcaa tatggtttgc tgcagagaga aataaaggac agttgatctt
      961 t
//
LOCUS       KCLA01002087             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33964upu ultra-conserved element locus uce-1375,
            sequence.
ACCESSION   KCLA01002087
VERSION     KCLA01002087.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33964upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-1375"
BASE COUNT          238 a          147 c          134 g          233 t
ORIGIN      
        1 gcataattag cattaagaat ggaataaaat atcactcctt ttgaaaaatt tgtcatgcca
       61 taatagaaac gaaaccttaa aatcattttt ctttcctgac tgtaactgtg gaggcctgta
      121 acagaaaact tctttacttt tgcctctgtg tgtctgtaat ccagacatac acataacagc
      181 ttgctttctt ctgttgcagg tgtattgaca ggcttgcatc ccttcacaaa ctatgctgta
      241 accctaactg cttgcacttt gactggctgt actgagagct tgcatgcatt gaacatctcc
      301 actccacaag aaggtaaagt aatttcaaag gtcttgactt ccacatttca gtcatgaata
      361 ataaaacagg agaagagcta aatgctgcaa agccatttgc tggaaaaccc caacctaatt
      421 tgatgacaaa gtgcattgcc agaccataat tgctccattt tttggggggg tgcgaaaatg
      481 aatcaaactc catacccttt aatgacatgc atctttaata gctgtaatgc agattaatgg
      541 gctttttaat tgctgttaca ttgttcatgc aagagccttg tcattaatat gaagcatctg
      601 aaagattaat gaaagcttcc tcattttact atggctcaga agtaaatcta gagacagtct
      661 gactaaaaag aattgattgt atggcacggt atgaaattga gaatcaaacg gttgatttcc
      721 atggtttctt ttaactgcta aacaccagca at
//
LOCUS       KCLA01002088             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33980upu ultra-conserved element locus uce-7173,
            sequence.
ACCESSION   KCLA01002088
VERSION     KCLA01002088.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33980upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-7173"
BASE COUNT          181 a          259 c          244 g          308 t
ORIGIN      
        1 gcttcggggc tgccttggaa aggcgctgct ttggcaaacg ttcacatcaa ggtttgattt
       61 ttcctctttc attttggttc agaggctgaa aaaaccctct ggttcatacg gttgtggatt
      121 aatgaaacgg aggacatcct ccccccgtca ccccttgacg gggtgcgttt cgcattaccg
      181 ggtgatcacg tcctcctttt ttaacggctg aaatggtttg caaaggccac ttcaagtttc
      241 tcggcttttc actgcctttt gtgtgagact gtcagcgccc gagccccggc catgacatgc
      301 acagaccgcc tggtttttct ccttcagatc agcggctctg gacagcttct ctttctctgg
      361 cagccgcttc aacctgctct gtcttgtcat ctttgagttc aatatctgct gctctgaagg
      421 aaaaaaaccg ggatgggttg gaccattgta tttggtcttt tgaccctcca tgttgcccat
      481 gagcagtgaa ggataacttt tgacaagcca tgtcagatgt gacaggcaat ctagttgggt
      541 tgagtggaaa tgtgctgtac aagtttgaag ccttagttgg gggcattttc ccggtgttcg
      601 gtgcatttca attgacacca gagctcagcg tcgttcgttt ccacagcgtg agggttgagc
      661 ggcttttcct gcgcctttcg catctcattc cgccatcgcc acgctggaag ccctttcctt
      721 ggtttgtttc cccgtccctc aggacacccc attccgtttg gttttcatct ctgcctgcct
      781 ttgattttag cctgatgttg gagatgatgt ttccctgtcc cgtggatttc tcccttgcca
      841 cgggtcaccc ggctgcgatg tgacgggtga ctccgagcac cccgttccgc tggaagttgt
      901 tgaatattgc aaattattcc gagagcgtcg ggggaacctc gctaaccttg aagctgcttt
      961 tctttccaaa ttaattattc cgaaatgttg at
//
LOCUS       KCLA01002089            1067 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 33995upu ultra-conserved element locus uce-871,
            sequence.
ACCESSION   KCLA01002089
VERSION     KCLA01002089.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="33995upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1067
                     /note="ultra-conserved element locus uce-871"
BASE COUNT          336 a          172 c          219 g          340 t
ORIGIN      
        1 ggctttttgg acttggtcaa cgtaaacatg cattcactag ttttcatttt tatgataatg
       61 aacatagggg gtcaatgaaa tatagaggga aaagtcataa atctacaaaa gtgaaaccta
      121 cccaaggaac aaagaaaggt caggtaaacc atctgtgtaa gtcacagtaa tagtgcctgc
      181 tgtttggttt atgcagtgat acagctttat tattctctaa aatgaaactt atccactaaa
      241 tcaagttaaa actaaaggaa agctgtggag gtgataaatg gcattgcctg cctgtttcag
      301 aatagggagg cagttatgtt ccttgatttt ttaatagttc aggtttattt gtgaagatgg
      361 tgcaccagca aagaacatat aaagggggcc gagaaaaatc actgtttaat attgcagaat
      421 ttactgcttc cattccgacc atgagcctaa atttacacaa tgaaatttga ttatctctaa
      481 taacaatatt agatcctgca ctggatggat gagaattgag gtggttttgt tgattgcaag
      541 ggtttaatgt tgcatttcag aatctgatgt ggtttagcct cccttccatt aactggaaaa
      601 cccctgaggt tttacaatta tttcttaaag ataatacatt taagattgca ttggtaggct
      661 gaagaaaagt cataaaggca agaagggaag cccttaataa ctcttgagat tcagacatgt
      721 tcagcagtta gattggctct gacttcacca agggtcgaca atgtgtcatt tccatgaagc
      781 caaattgccc tctgcctata tgatattaat gtgcaaatca atatttcagg gattaaattt
      841 cccttcttca ttttttatgg tttctacctc aataagtctc aagtctatta gaagaggctg
      901 gatgatttaa aatctttcac tgtagaatgg cttgtcgtag ccttgtttca cagaccgttt
      961 ttggattttc gttataaaag actaaaggca ttccagagaa gttgagagtc agtataggga
     1021 catgcttact gttgtaaagc ccttgttcga ttaagagcta aaaaggt
//
LOCUS       KCLA01002090             866 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34010upu ultra-conserved element locus uce-3879,
            sequence.
ACCESSION   KCLA01002090
VERSION     KCLA01002090.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 866)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..866
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34010upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>866
                     /note="ultra-conserved element locus uce-3879"
BASE COUNT          266 a          183 c          150 g          267 t
ORIGIN      
        1 aacccccaaa aatgaactcc aaaaaaattc taactatgat gaatccatga ttaccagaag
       61 catcttgtag atcttaatga ctttaacagt ttgaatttca ccaacagtta actataacac
      121 aatcttttaa aactagtatt aaacagtaca tgaaatatcg gactacatga gatcttgggg
      181 ttttttcacc tgatggaaaa gaatttctta tcactttgct tccttaagaa atacagtatc
      241 caaggagaat gaattgatgg aaaacctgat gacaaaaatt tctaccagtc tgaagcaagt
      301 tttggagaat ctgattaggt ctcatgctgc aatactaggt attccatttt tgccaaaggg
      361 ccagctatta ttattaacat catttgtctg aatcattact ctgcaccttg gttcagcaaa
      421 cactatgaag atggcatggt aataaatgac cgcaggattc tttcctgctt cagcctgttt
      481 ttatctgcca cctctctacc gtcagctcca tctttctgaa cctctctgaa tccccaaaag
      541 ggacggggcg tctatttgtt ttccactagg ttaccactct gtctattgtt gtttgcacta
      601 aagggtacga attcaattca ttcttgtgac ataaaagcac tgatacagta aattttttgc
      661 ccaagagaaa acacaaagtt gctgaatatg ggctaagatg tgaagcactc gcatgcacgt
      721 gaagaagctt tctgagacac tcttgctccc tgagtattgt tctttctcca ccataatcta
      781 ggcaatcaca taagtgcatg ttaaactcac tctaaccttg ccaaattggc acctcttgca
      841 aaatagtggc tgtgtaggag gcgtta
//
LOCUS       KCLA01002091             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34026upu ultra-conserved element locus uce-2068,
            sequence.
ACCESSION   KCLA01002091
VERSION     KCLA01002091.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34026upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-2068"
BASE COUNT          274 a          155 c          109 g          252 t
ORIGIN      
        1 ttcctgaaat gtacagacaa atgtgggtaa ttccttttta attttaaggt gaaaatcata
       61 ccaaaaccct cagtccctac ttttccatct tcatttgaaa atcaatctca gaaagggcaa
      121 aaaagattgt aggtttaaac taattaggaa ttaacatcct cacaattatc ctaatttgtt
      181 attaacaaaa ctgagatttc ttcctatgat tcacaacagc ctctgctgaa gagaaactat
      241 taattactag acagacagtc agcttacgag cgagctgcat tttaaaaacc tcctttaaaa
      301 tacaattgct aaatgcctta cagtgctgta atgtgagaca ggttcaaatc ttattacttc
      361 actgaaatta aaacctaagt tttaatactg ttcaagtcga acaatgattc cacactttat
      421 tgcttttgaa atcccttgat gatcatagga aaaaatgccc tcgagaaaaa gagactctgt
      481 tttcgataaa cagaaaatac agtttgcact cttagcctct ttgtcatcac aaaaaaagga
      541 tttaatgcca attctttaaa aaaagacttt ttttcacaaa atgtgcacct tgtgtgccat
      601 ttgtaaaatc agctcacttt cttttattta ttactgcagc gcggcaaggc aataaagcag
      661 gtactgatag ctaataaatt acatgccttt taaaacaatt ctccagctac aaaaacttgt
      721 aactacaaag gcttacattt acatggtaca tcgtctgaaa cgcctgtatt tatgttctct
      781 ttaaccacat
//
LOCUS       KCLA01002092            1140 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34041upu ultra-conserved element locus uce-2539,
            sequence.
ACCESSION   KCLA01002092
VERSION     KCLA01002092.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34041upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1140
                     /note="ultra-conserved element locus uce-2539"
BASE COUNT          263 a          247 c          243 g          387 t
ORIGIN      
        1 agtgctgtga atttgcgcag gggcgagggg tctttgtttt gtgtgattac atgctggttt
       61 gtggctctgt ttcctctttc atcctccacg ccctctctct tctacctgag acattaaatg
      121 aaatctaaca tagcgataca ttcagacaga ggcgacactg gcctgtgcca gttccccagt
      181 ggcttgaaac tgctggctgc aatactgcaa acaaattcag accctgactt ggctggtagc
      241 tccctccagc tatctgcgtg tttgttctcc aggctttatt ttacctacgc tactggagac
      301 tgcggagtca cagcctctgc ctcattgtta tgcagggatg ggaaatattc ctgtacttat
      361 ttgcattcat tagctggtgg tagttcctct gttgaggtct ctagccttgt ttttacagtg
      421 cttttggcag tgtttctgca cttggtgtgt gaatttttat gatctgttgc atgttattca
      481 tgcaatttcc tgccctgtaa tggtatcagt tttccagacg cagaggaata caaacgaaaa
      541 cccaggagcc tgcattagca taaaatgtcc cagttctgtc agtttgatta atttgtctct
      601 ttgtctccac tctatatgat aagtgctatt aatggttgca acacttcata tgtcaaagtc
      661 tttcttccta atgacttgaa aatgtggttt atttccccct tttttgtatt atttttctca
      721 tttagcattc cactcaagtc tagatttatg ccatgctctt tcattatctt actggttgca
      781 gcgctggagt gattacatat ggtgtagggt atgagcaaag atgtgatccc aggggcagca
      841 gctgctgatg caagctgaaa atagatccag cgtatgctca gcacttttcc cagaggtctt
      901 ttatttatta ggaacaggct tggtacagga cagctcggac cctcatttag caagatgact
      961 ttttgccttt caagaagagc gcagtgactt tgctctattt accgactgct gtgtaattct
     1021 ttttcactgc ctcctgtcga agcagtgact ctgcctcaca tgaattacga tataatcctg
     1081 atttataata aagtcaagaa atgataggct ccattggaag taatggaact tgacagatct
//
LOCUS       KCLA01002093            1102 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34056upu ultra-conserved element locus uce-3217,
            sequence.
ACCESSION   KCLA01002093
VERSION     KCLA01002093.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1102)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1102
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34056upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1102
                     /note="ultra-conserved element locus uce-3217"
BASE COUNT          338 a          178 c          228 g          358 t
ORIGIN      
        1 tgaaatgaaa tatttctgca aatgtatgct tgcttgtttt cattacttca cataatgatt
       61 cctctgagga tgcaaacact gtttcatgct gataaccatt gtttttcaga aactgaaaga
      121 atcaaattgg aaatttgtgg aagaactcct taaaaaatca actgatgctc aagtaagtgt
      181 gtaaggggag aaataatgat taaggaaaat gtcagggatc ctttcaggaa aaggccgtgc
      241 atgaaaccaa gtccaactag caagtgtatt tttggagttc tggtgtgttt atcactagta
      301 aatgaacatc cttgacgtgg ctgaactatg gcagtgcaca gttccctcct tgttagcagt
      361 tacacttgct ttaaagtgct tgtgtctgat gctaaattgt cagataaagg aaaaagatag
      421 aagggcaggt atatggctgc tgagacaaga tgtattcaga ataagaactg gatgcttaga
      481 aaatgtaaac caggtactga ctgtaaggat atcaagttga ggagacgtga tgagggagat
      541 agtcagttgc attgaaaatt cagctatatc ctcatcacag caggaaggtg acttgccttg
      601 ctgagcaatt tgtcttacag gcttgaatca aactcttact gataaggttc tagtttctga
      661 gcactcattt cataccttat catttttctt tctgcacaac tgttaatgca atacttcatg
      721 gcccagaggt cagaattgac ctccttttaa aatgctttta aatatgctgt tcatcacagt
      781 tttaagtgtg ttatgttgta gctctgtaaa tttgctctga attctcatgg tgcaaatacc
      841 aaatgtttct cagcaacacc tacaaaaatg tttttaatgt ttgtatgctt aggatgagaa
      901 taggtatgtt caatttgccc tcagatggaa taaaataaat cctgcaaagt tccattgttg
      961 aaagcagaag aggaattcat tctttctttt gtttttgctg ctttgctcat gcagtagcaa
     1021 cagctatggt tgaagctaga gtaaggaacg gtatttgtta caacagcagt ttttacaaca
     1081 atttacttag tagttattgt ag
//
LOCUS       KCLA01002094             683 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34072upu ultra-conserved element locus uce-2062,
            sequence.
ACCESSION   KCLA01002094
VERSION     KCLA01002094.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 683)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..683
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34072upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>683
                     /note="ultra-conserved element locus uce-2062"
BASE COUNT          182 a          135 c          129 g          237 t
ORIGIN      
        1 ttttttggat aaaggatttg agccattctg tataaatact cgaatgacag aatttggctg
       61 ggcatggatt acaagcaccc ctaaaatctg agagtattcg ttagggtttg agttagctag
      121 cctgcagagc ctcaacgcat ggtgtgaaat ctttgccatc aaccgtgaaa gagtgggttc
      181 ataattttcc ccgtttactg tattttatct tttacagaaa ctcagaagaa aagatgtttg
      241 taagcaactt cccgaattat tttttgccat cctcgagcgt agggctgcct gtttgaatgt
      301 ttccaagaaa gtattgttct tatgtgacaa caggtcagaa agactctgca ttaattacac
      361 taacatatgg ttattaacag attctagctc agggagcaat actttacaat gttatcttcc
      421 acatagtcag atgttagcca tattgtcagt gctggcagct attgtttcac tcatttactt
      481 cacagagcta attactccct aataataact ttaccttgga gtttttcact tgcttgtgcc
      541 agcaaacctg ttcacactac atatgctaat tattggcact tattcattat gttaagatag
      601 ctttaagttc aagctgtgca gcctggcttt cggtatggag ccagctggct gcaaagttcc
      661 accttttttt tttcctttct ttt
//
LOCUS       KCLA01002095             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34088upu ultra-conserved element locus uce-1997,
            sequence.
ACCESSION   KCLA01002095
VERSION     KCLA01002095.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34088upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-1997"
BASE COUNT          287 a          210 c          178 g          304 t
ORIGIN      
        1 aggcataact ctctatgcct ctcaactatc tctgctattt atttcatttt tatggcttct
       61 aaaatgtcag gtactaccct caaagacctc tcttgtattc atcggttttc tttcaggaga
      121 ggttgaccag agtgtgaagc atacaaggtc tcatcttaat gcttatagta cttcttcatg
      181 attctatgca aattgacagc tacttccctg tgcttcctgc taggacttct gaatatagta
      241 tgagtagcta ggaaataaaa aaatgggtat aaaaatcaga aatacaacag ttcagccctg
      301 agcatatctc tgtgtgtgcg tgtgtatgta tatgtgtttg tagatgtgtg tacacactgt
      361 agtttgaaaa gtgaatccgt gtaaatcagt gcatttattt agctctctca ccaactctct
      421 ccctgagtta acaccccagc acacacaatg ctagcgaagg tgattatctc tgctagcata
      481 attcctccgt aacatctgct ttcgcccata acactccact aatttttccc tcatttcatt
      541 acacataatt ttctttcaac acaatctaca tgtattaagt ggtaatgact ttccagttaa
      601 gagcaaatcg acgccaaggg acccccccct cgattgcctg ccgtgcctga ctccggctat
      661 taaagataaa tttggtgcct cagaaagctg cagtaagcta atcaatcaat taagcggtta
      721 ggacatacat tatcaaaatt ccacagtgtg ggggtgcatg agagcatgct gatatacttg
      781 ctatgatttt aggaataaaa aaagaaaaag gatgtaagct acaaatgaat acagtttgag
      841 gatgaaaatc agtatttggt gtcttctgaa atacaaactc cagctattac acactaccga
      901 cagcttggtg tctgctttta cagtttcgac agcagctttt atacctagtg ccgtctacta
      961 gtaataccag aatggagct
//
LOCUS       KCLA01002096             249 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34103upu ultra-conserved element locus uce-4730,
            sequence.
ACCESSION   KCLA01002096
VERSION     KCLA01002096.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 249)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 249)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34103upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>249
                     /note="ultra-conserved element locus uce-4730"
BASE COUNT           78 a           58 c           64 g           49 t
ORIGIN      
        1 gatgtggcca gccatcagat cgaggaattc ccgctgccca ggggctgaac ccagggctcc
       61 aagccccagg gaggcaaagg gttaaccgct cctgaatgca caccaagccc aaagctactg
      121 ggaaagaata tcccaaaaaa taaccagttt ttttttccag ccgctggacc ttattgaatg
      181 tcattgaaga aagttttgaa tgccagataa agagaggcga attaaagtgt gtgacagcag
      241 aggataagc
//
LOCUS       KCLA01002097             393 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34118upu ultra-conserved element locus uce-554,
            sequence.
ACCESSION   KCLA01002097
VERSION     KCLA01002097.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 393)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..393
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34118upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>393
                     /note="ultra-conserved element locus uce-554"
BASE COUNT          119 a           71 c           88 g          115 t
ORIGIN      
        1 aaacagaaag aaagaaagag ctaccaaaca ctgcagtgct ggggtggtga gtattcgggt
       61 gggggcgggg aaaatgctgc agtttttgtg aaataataag gtggaaaaaa aggcatacaa
      121 agagtaggtt tttcattgtc tgtaaaatat aaacacagat gaattctgtc tttggtttgt
      181 tcatgctttt cactctgcac agcagggatg ttcttaagaa gttgccctct gcgaaatttc
      241 actaaatgga aaccgtggac cctgcatgat gcgattataa tcacaccagc cattcttttt
      301 acataatttt ttgtttaaaa tccagtgatg ctccttgttt ttaaaacaca tagcgatatc
      361 tacacaagca gcggctggtt tatgtccccc cag
//
LOCUS       KCLA01002098             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34134upu ultra-conserved element locus uce-6401,
            sequence.
ACCESSION   KCLA01002098
VERSION     KCLA01002098.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34134upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-6401"
BASE COUNT          199 a          120 c          150 g          229 t
ORIGIN      
        1 tgaattaaga ttgtggacta attacagcac cttaaaactt tctgagctct cctctgcagc
       61 ctggatgtcc taatgtagtt ggtgtgtatg tgtgtttaat agatgctgtg ttttctcttt
      121 taagaagatg ttaacaggct gcactcttca aatgctgtga taaaaattca gagtttagct
      181 ttccaaacag gtttttgaaa tcaatatcga gagagccact aacaggaggt aaactacaaa
      241 ccgcaaacac tttgaatagg atagctcttt ttatataaca tttgatatca ttttcacagc
      301 gtgatctcta ctttcatact gtgatagctt ttacctggag tttagatgat tcatttttgt
      361 agtggatact taacttttgt atgaggaaaa tgcaagagaa gccagcacag cattaaatga
      421 actatagttg cagctttaaa tgaactacag tacagtaata atgtagaagg ctccgggctt
      481 tgccattgca cagggctaga tgcgtgacta ctcgatcgat ccataagtga ggcaatgtgg
      541 aggtctggaa tttctctcac agctttttgg catatccaat tcaatttttt aaggtagatt
      601 tggcactcag agcttgttta gtaatggtta gaaaccttac aggattctgc ttgcaaaggc
      661 actgatgcct gttggtgtgg atcttggaca gacgcttg
//
LOCUS       KCLA01002099             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34149upu ultra-conserved element locus uce-5782,
            sequence.
ACCESSION   KCLA01002099
VERSION     KCLA01002099.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34149upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-5782"
BASE COUNT          183 a          141 c          114 g          199 t
ORIGIN      
        1 aaatctttac cacataagta atgcgatctg atttagagat aaacgcagct ataaacgcct
       61 gagctatctt tgggatgaaa ggtgggttga aatttaatct gtgtactaat tttcatttgt
      121 attcgcacat tagctaaagc taattcgcaa acaattaaaa gacaggaatg aggaacccag
      181 atgcggagca gtagaatgcg ttacagagaa gcagccttca ccgtgtgatt ttctaacaca
      241 tggttttatt tttgctggtg tctgtcacaa atcctaaaat accattacag agttagcaga
      301 tggttcccaa gtattcatac ctgataaagc ctcctgggtg atcaagcact gaaaaatcaa
      361 tatatttttc aactttcaat ggctagctat tcagtttcat tacatctcgc tattcctcca
      421 tggctactgt gatatggaca cttacttcac cattgcatta agctctaatc tccgggctgg
      481 ctgatacagg cagttaatga atagctagag taccacctcg gtatgcttca caattcttct
      541 gatctcagta ggatgtttcg agtactgtga tcttgtattt agtaacaccc cacttcttcc
      601 cccctctttt tttccacaca tgcacagaca cccctct
//
LOCUS       KCLA01002100            1109 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34165upu ultra-conserved element locus uce-1560,
            sequence.
ACCESSION   KCLA01002100
VERSION     KCLA01002100.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1109)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1109)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1109
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1109
                     /note="ultra-conserved element locus uce-1560"
BASE COUNT          287 a          296 c          222 g          304 t
ORIGIN      
        1 cagcctgagc cccttctcct tgcaggggtg tgtccgtctg tgccagcgag gggaaatcca
       61 ttacggccag cactgcgttt cgtgcgttgc agagccctga aaccatttgg gacgggcact
      121 cagcactgcg gaggatggag atttactgca ccagagtcaa ctgcgcgcag atttgcagag
      181 tcctgaaatg aaagaacccc gcagaagctg cttcagctga gcaccagcta catcacaaat
      241 tttcaattac gtaaagggaa ggaggtcctc tcgctcccag ttcttcctca ccacgcaaaa
      301 caaacacgcg agatttatat tagctgttgt taattttgga taaagctgtt tgcgcgaaga
      361 gcgtcgctct ctcccattaa taataataat aaaaccccca ccatgccgtt ttgaaattct
      421 ggacatagtt tcccccaatt tcaattgctc tcgctccctg agcatttatc agctacctga
      481 ttagaatttg tttccacaca aaccattgat catcagccta ttactaggca aatgacagtt
      541 aattacccac tacattaacc actgggacct gagacctgct tctgctgcca tcagtcaaca
      601 tgataaatgt ggcaagttca gtaatgcatg gccagccctg agctgcctgc tatagtgtga
      661 acaaccctca atctcacttc caggcccagg aaaatctatg gcaatctgca taattacaag
      721 ctctgggtta ataacagaca aatgatttgt tgcatctaaa caaagtcctt ggaatgggcc
      781 cggtctcctg tggctgccca ggctgccgtc gtgccaccgg tgcgcctccc actacaacgt
      841 gcccagaaca catctccgac gctgcatcct tccaatttgt tgccctccaa tttatggatt
      901 ctgcatatgt gatttttaat cattaaagaa ctcttgaagc aatattatct taattattct
      961 ctgctgtaac cagggaatta ggcttcagat aaaattttct tcttctgtgc actttccctg
     1021 cctcgctgga ggctccatca gttttcatct acacctggac tctgaaattc taatgatgaa
     1081 ttattgcccc ttttcctaag agggcgaac
//
LOCUS       KCLA01002101             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34181upu ultra-conserved element locus uce-2953,
            sequence.
ACCESSION   KCLA01002101
VERSION     KCLA01002101.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34181upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-2953"
BASE COUNT          276 a          222 c          215 g          252 t
ORIGIN      
        1 agaaacatga agagtctaca tgttcctcag gctccactgt agctggctga gcctgttgta
       61 cttggaaggg ataaggaagc catgttccaa aaccctataa aaaattaaag cagagcactg
      121 tttaaaacaa agcagtgggt ttttaggctt ttatgtactc caaataatac aacaatgaca
      181 ctaaattgag ctcatttagc tataaacatg atattacact tgacagtttc cagtgctaaa
      241 acagtccatg ctgaggagaa aagcagcatc atgcaaggag caaaagggcc aattaaaaat
      301 tactcaacaa aacctcagca tttttcagtg gtttggagtc ataactcagc tcagacacat
      361 atggtaccag aagcaacctg cccggttaag cagtggagag cagacgctcg agtttatgtt
      421 gttcccctgt ttatttaaaa cggatgggag cacttgacag aaaaatcaaa cttctggtct
      481 tggctcatta atctctgttg tatctgtcag atgtgtgtgt ctagagtttc aacaaggctc
      541 tagaattgag attactgctg agctctgttg ttttctctaa ttctgaatca gggcaagcgc
      601 tgccagtcac ccctcgtgaa aggagagcaa ggggccgttg ctgcagtcct tggcagtggg
      661 cttctccctg ccctgttctt tggatttgat ttcagaggca gcaacaacct ctctctcccc
      721 actacaacct aaacttgggc tggctgcttc ccctctcccc tgcaaaccag actcatcgct
      781 caccaccaaa gcatgttccc attgctgtga caagggagac ttgtggtgga tgctatttca
      841 tccttggatt cgcacacaaa attgttaatc caccaaagac agtggaactc ctccagtgta
      901 aaaccagggt aagtgatggg ctcagcaggc ctagagtggg ctcagcagga ctgagacaaa
      961 tatgg
//
LOCUS       KCLA01002102            1017 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34211upu ultra-conserved element locus uce-2784,
            sequence.
ACCESSION   KCLA01002102
VERSION     KCLA01002102.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34211upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1017
                     /note="ultra-conserved element locus uce-2784"
BASE COUNT          285 a          231 c          220 g          281 t
ORIGIN      
        1 aagtagcggt gaaagcgtag ctgcactcag agccatcact gaaaggaaga ccatgctgat
       61 ggacatgtga aaatgtccct gctttaactt gccaccttta aatggactta gcatggttag
      121 tcatcttagg tcacttcaaa tgtactccat gtaggtgctg gacatatgct gaaaccataa
      181 tataattgaa tatggaacag gaacaggatc ggtccctcga gaaggagatt gtttcttcaa
      241 actagacatt aatgatagag tgagtgacat ttatctcctg tccttttatg aatcgctgag
      301 atgcaagcag tgaacacctt gcctttgctg ctagctgtgc ctcgagccct gggaagctgc
      361 ctgccattca caagccaatg ccttgtacgc agctccatct tacctgagtt tgcagatggg
      421 ccattcccca ggtgggtctg gcaaaacact tctcattaat cattgcttaa agccctctca
      481 gtgggaagac ctcaggttag acatcatttg gaaacaaatt aggtgaaaaa tagctctgac
      541 aataaggagc ccacacagaa ttcccctgtg agagcttcag cggtgtgaaa acagactctt
      601 ccaggacact aaatgatctg tcagttagca aatgacatta taatccagtt ttatgccaca
      661 gacaagtcaa agcctttgct gcacttcctc attttccctt ctgtttctcc ctctttacct
      721 cctttaaaga cactgaatgt ttacgttagg ggaggaaagg atctgctgca gaatttacaa
      781 aacattttca gtaaggtcaa acaataccag actttccttg tgaagtggta gagaggaaac
      841 gaaatatctc agaaaggagg cagagtgctt tggtctgtga ctcaggaaag agagactgag
      901 atttcccttc tgctttgcca ttgtacttcc agttcccttt gactatcgcg ttcactctta
      961 taggcagaga tcccagttct gcacaccctt cactttctgg agacaaagga cttggtg
//
LOCUS       KCLA01002103             407 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34226upu ultra-conserved element locus uce-4654,
            sequence.
ACCESSION   KCLA01002103
VERSION     KCLA01002103.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 407)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..407
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34226upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>407
                     /note="ultra-conserved element locus uce-4654"
BASE COUNT          130 a           64 c          110 g          103 t
ORIGIN      
        1 agggagaaaa aaaaaaaaaa gaataaaagt ttaataaacc tgtgctgtgt tgtggatgac
       61 tttgtggcga cctttgttgc aaatggccta tgcatgcgga ataatggtct cggtgcagag
      121 agggaaatgg cttagtgcta tcattgttgc ctcggtaacc atcagagtct ccatctagca
      181 gagagaaatg agttatgaaa aggcttgagt gaagaaggga ttaacacatg atcccaggga
      241 cagcatgtca atcaaaatca gcggagaaat tacactgctc tatttgagaa tgtctccgga
      301 aacgcaacct tcatgagtgt atgtgtgggg acgtatagag gcatgatgga gagatggaca
      361 gctctgatcc tccaatggaa gagatgtatt ttttgtagcc tatggaa
//
LOCUS       KCLA01002104             278 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34242upu ultra-conserved element locus uce-5566,
            sequence.
ACCESSION   KCLA01002104
VERSION     KCLA01002104.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 278)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..278
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34242upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>278
                     /note="ultra-conserved element locus uce-5566"
BASE COUNT           82 a           44 c           46 g          106 t
ORIGIN      
        1 tatttctgtt cactgcacac tacattgttt taccatgaac aatgttttat ttataagaaa
       61 aataaattgc cagagttaaa aaacacagtc cattttgttc taggcaacac attgctttta
      121 tcacacaaat aatttattgt ctatgcttcc agatgaggtc tgttctgacc tttccaggta
      181 tgctgaatat tggtgcataa ttcgtcttgt tggggaaatg tatttatttt aaccattaat
      241 aaatgctgtc ataacctttg tgttgagagg taagtttg
//
LOCUS       KCLA01002105            1065 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34257upu ultra-conserved element locus uce-1423,
            sequence.
ACCESSION   KCLA01002105
VERSION     KCLA01002105.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34257upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1065
                     /note="ultra-conserved element locus uce-1423"
BASE COUNT          312 a          232 c          196 g          325 t
ORIGIN      
        1 cctgtccagc ctacaagagt tctgcaggct gttttacgct ggtacaaacg taatttaata
       61 gccgatatgg atattgtgtc actttcagct atctgctcta tactctggtc tcattctgca
      121 ctagatgatt accttgctgt cctatatgca caatttaaag ggaattacct attacttcaa
      181 ttatttgttt cttatcaact gatgttagac tacaaggatt tgcattgaaa ggacacaaag
      241 aaagagcaag tcatggcaca ttgccaaata aaagagtaat gttctggtga atttagccca
      301 aataatttac tgctatataa aagtggaaaa gtggaaggtg aaccctttga ccaataaatc
      361 tcttctgcat gtgaaaccct tatcttgtcc cctccaatat attccacact aggaagccat
      421 catcattggc tctggtttgt tatttgtaaa ccttgatctt ctgcactcgg tgtcctaaat
      481 atggataatt agcatcagtt tatcacgcct ctgcatattt tctcttctct ccaaacatgc
      541 atgcttctat tggctgccat tctgtcacag aagattatgg agacagattg cagagaatga
      601 atgtgctaaa cgagattagg aaggaataga aatagcaact tggccaataa attcctcgtg
      661 agagccttat catacaatta cacgttgact tgtttcacac tctcccagcc tcttaatcca
      721 acgcccccac caagaataaa atttcactga tttctgaatt actgcatatc ctcatgactt
      781 gtcactgaga atggttggaa gaagcaacac catcgaaaat agcacatcaa acttccaaag
      841 agaaaacaaa ctttacggac agaaagggat gtggctttaa actgttcact gatccgtgtt
      901 tgaggttttg tgccaccaga tttcgaaggg tcgagacttc aacatcagac gtgttcctct
      961 tcacttttac tccctgcctc ggtacaccag cggttctgtt atccttcaga gggatcagaa
     1021 tatggtgcta tagtgctgcc aaaccgtgtt atgtgaatat ctgat
//
LOCUS       KCLA01002106             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34273upu ultra-conserved element locus uce-2797,
            sequence.
ACCESSION   KCLA01002106
VERSION     KCLA01002106.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34273upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-2797"
BASE COUNT          226 a          208 c          190 g          218 t
ORIGIN      
        1 ctattttgtt gattgcactg ccctcagaca ccgcgcatcc gaatcccatt tgtagcagcg
       61 atgccagcgc tgggattcaa agtcagagcc tcttagggta acagccctgc tgccgcttct
      121 gtgcgagtgg aagcgtctaa taccgctggc atcagagact gggctgataa agagacaagg
      181 tgatctaaag ggagcacaca tggaatttct cccccccctt tttcttagca gaaagataaa
      241 ggcgatggga ccgggttgag agttgacgaa ttggtttcat tcagaggagc gctatcattt
      301 ttatgtcctt tttgaaaacg cacccacggt gtctgaattc ctgttaatgc aaagttcaga
      361 taaagctgat gaaaagcagc tgccatcttg atagttgcca tggcagatgg catcagcctt
      421 tatgctttta tcagtattag tatcagaaca cactctgtgt tccaagctga gataaaaatc
      481 attgaagctg tacctggaat aggcagatca acactgcagg tcccacacag ttttgagtct
      541 tttcagaaca ggctgcttga aagctagaga caacacattc ttgttattca ttagttcagc
      601 gatgctgatg gtattttgta aacttcacag atgaagcagc ctttctaaag agctgctgcc
      661 tcccttcctc cttccctccc acccccggga atgctcaggc tttgaaaaga aaaaccacac
      721 cagacacaaa cagacgcaca cacgccagag ccactctgca gtgagtggac aatgggcagt
      781 ggcattcctt cttgattaat gtgctgtgct cacactgaac cccagtccaa ctggcattca
      841 tg
//
LOCUS       KCLA01002107             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34289upu ultra-conserved element locus uce-6246,
            sequence.
ACCESSION   KCLA01002107
VERSION     KCLA01002107.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34289upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-6246"
BASE COUNT          293 a          191 c          190 g          236 t
ORIGIN      
        1 gaggatagga tccaagaaga gaaacccaac gctgaaagtc tcaaaccaca tagaccccgc
       61 ataggtcctt ctcagctgtc agaaaacatc tattatcaag aaaatcaagg ccattaaagt
      121 gggaaaaagc ttcttctctt gagactgaag aggatgcccg ttaccgtggt cggtattgta
      181 gcatgcggga gctaccatag gcacaatacg attctcatat gttttaattc atttccgcat
      241 gcctgcgttt aatatgcttt gtgaccatgg ctgcaattaa tacgatttat gagagacgga
      301 cacgtgcaat atttttgggt atggtgatgc ttttatctca tcccgtgagt gaaggatttg
      361 aagaaacagc tcagggaaga ttgttggcag ttaacgtatt aagtcgaact gacagaatca
      421 tgagtaaact ttggtggagt taatgatatc ctcttatctg accctgacac atttgcagca
      481 tgtaatttac agaagctctg tccagggaat cttgacaaat gctcctaacg atgtcagggc
      541 aatgttccat tctgatgtaa aacagatgtg ggtcagatac cctcattcat cactaacact
      601 gaaaatttca aactcctccc gagatgaatg gcattacctg ctgttcacaa ccctccctgt
      661 agaaaaacct ctccaagcca aaacatcaca caagggcaaa cacaaaaagg atggttataa
      721 gggtctagaa tgagggagtc agaaaactaa ttagaattaa atagaaacgc ggttctatac
      781 ctgcagcacc ccagacgcgt gttgctgatt gatttataga tatgaaaatt tctgcccaat
      841 gtatgaggaa acactcaatg acaaacacat cctctgtaat gaaaccaggg gcaaacatcc
      901 tgactttgaa
//
LOCUS       KCLA01002108             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34305upu ultra-conserved element locus uce-1420,
            sequence.
ACCESSION   KCLA01002108
VERSION     KCLA01002108.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34305upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-1420"
BASE COUNT          219 a          171 c          172 g          250 t
ORIGIN      
        1 aacccgctcc ggctggaatg ttaaaagatc ttttgcacac atttggatac agaggagaac
       61 aattaaatac cctctaataa ttaatgtata ttcaatctat agcatgcatt ctcctcttat
      121 tagaggctgt ggggtttttg ttgcaatcta gctaataaag gctttctttt ccacaagaga
      181 attttgacag ggttgactcc agacggcttt ccagctgagg tctggggcct tgctaacctt
      241 caaaattttc ccatttgagc tgcatcaaag tgaaggaaat tcaaggatca ctaacgtctc
      301 agatggtagc acttgcccta acaaccaagg ttcaggaatt ctttggagca ggctgaggtc
      361 atttttctcc ccttttctcc taatgctttt ctctattaat cagagctcac agctcagatt
      421 ggtcttcaac ttcctcccaa tccttgctaa gcctgtcatt tctagctatt atttacttta
      481 atggactttg gctgatccct tatgaagctt tggatctgag aataataagg ctgaagagta
      541 acgggcacag acatgggtgt gggtttgcct gcagattaac cgtggcagat gggctttatt
      601 gcggtttcct gtgtgccgag tgttgattga gagggtataa tgagagaggt ggtgtctgca
      661 caatggctgc agccacttca ttgcacctcg cgtctaaaca accccatttt tctaaatctt
      721 tgggttgtga aattttagga agtcagagca caagaacaag tacaaaaaca actgtaaata
      781 accatgaatg ttaatccaac cctaattggt cc
//
LOCUS       KCLA01002109            1092 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34321upu ultra-conserved element locus uce-4212,
            sequence.
ACCESSION   KCLA01002109
VERSION     KCLA01002109.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34321upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1092
                     /note="ultra-conserved element locus uce-4212"
BASE COUNT          308 a          257 c          220 g          307 t
ORIGIN      
        1 aatgggttga tgtaacagca ttagctgtgt ttcagctgga cagcagtggc tctggaagca
       61 tggctttgaa aacatcgacc cacacaaaga cgaaacatgg gttctggaga ggaaatggtc
      121 agcatggctc acagtcacaa tgcccaaggg atgccaaccc aactactgag gcatgtgtag
      181 accatgtagt cttaaccttc tggtcttcat ctttctcagg gtcttcgaga gccagaagga
      241 tgtcaaaccc aggaggacat cagaccgctc ttaccatgca gggcccactg cgtgctgtga
      301 gcacaagcag ctctcacgta tcatgctact gcaaacttga gataatctac aggtcagctg
      361 tagccatttt tggagcagca cagatgtctg gaagggcctg ccaactgaga gccatcacca
      421 cggcaaggac tccctttctc acccagctgt ggactatatt gcatctgaca tgatgagcat
      481 ctcttgaatc tacctttcaa attttcggca aaccattttc tcactgtcct tcacaaagtt
      541 gacattttcg gcagcatgat aggaaagatg tcatgtcggc tgcttttcaa gttgttgtca
      601 cagtggttag caccagttct gtcatctttg ctttcctcac aatcccccat cttgagccat
      661 gtcacaaata ataatacttc caatgttttt gtcaaatttc aaatactata acccagctgc
      721 acatcttcgg atttactagt tatgttaatc tttgttgctc atcttcccag aagctgaagc
      781 attaggaact cattaattag tgacaaatgc aggatataca tagaactgga aaaacactac
      841 ccaaagccat gcacttaatt tattagcttg ataattttga agcctaatta aatattcaag
      901 tcaagtactc tttgaaaatg taatcttttt gagggaacat atttattttc ctttttgcag
      961 gaacacaaag gctatacagc tcagcatcgc taccatttaa gagtcacttc tgtgctccag
     1021 acaattccag tccatggctg atggggctga aaaacaggag aagctcaagt cacacctgct
     1081 cattctggtg ct
//
LOCUS       KCLA01002110             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34336upu ultra-conserved element locus uce-5675,
            sequence.
ACCESSION   KCLA01002110
VERSION     KCLA01002110.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-5675"
BASE COUNT          296 a          161 c          161 g          275 t
ORIGIN      
        1 tgtgcagctg acttaaaatt ttggcattta tggaaaaaca gaaagattgc agttctgtgt
       61 cttaagtctt agttcaacaa ggttttccta actagtttgc atttattttt tatgaaactc
      121 agtcattgaa aaagaataat aacaaaatta agggccaaag tgaataagga gactttttga
      181 aagctttgta aagtatttct aatttagagc caaaaaggaa ttaaaaccca cacattttaa
      241 tatgcttcat ctaaatacct gctccttgta tctctgtact gggagaagtt tatgttatct
      301 gttcagcacc atactaacca tcagactgac tgttccctgc agctctgctg actccaaata
      361 atgacttata taggggctct aatgacaaaa caaggggcaa ttatagacac agtgtgagcc
      421 ttggaataac tgtgtgatgt attttgcgga gctcattgac ctcatgttca agtccatttg
      481 tggatctggc ctgagcctga aggtatatgg cttgttaatc tctatataag aaagcagctt
      541 agagcacatg agattgtcca gaaaaagcat aacatctcca gtgatgggac aataagtgat
      601 agccagaaaa tctggtctga aaacaaatgt tctttgaagg atctgatgtg aataggttat
      661 tcagacactt ttcatggtca tgtccacata ggaaaaagag aatacaattt tttccctctg
      721 acatttaata agactatcat gaactttgaa catagactaa accctctttt taaagaaaaa
      781 gttcctatga gaattgctat atggaccagg aacaaaactg atcaaactat atccctcctt
      841 gttctaatct ctgaaattca accctgctgc gatataattc attgctcagc aca
//
LOCUS       KCLA01002111             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34352upu ultra-conserved element locus uce-5777,
            sequence.
ACCESSION   KCLA01002111
VERSION     KCLA01002111.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34352upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-5777"
BASE COUNT          289 a          175 c          156 g          237 t
ORIGIN      
        1 gtagacaaat gtaaagcgtt aaaaataagc ttcacacaag cagttggaaa caagtgcaca
       61 gtacaaattt aatcccccta atcccttgtc aattacaagg aatgtcctag agtaaagttg
      121 tatcaacaac acagttttca aatccatgga aaaataaatg aagccatcct tttcctcttt
      181 caatttcgac tattcactgt agctccctta aaggattagg aacaccgtct gtaataaaca
      241 caggcatcaa tttttaaaat ctgctctgaa aatggcaaca tttcacaagc tgtgaaaatg
      301 ctttggttta gggcatggcc tgagaggcaa taggccagca ggatagcact gggattagcc
      361 ctaattacct catgtttcac cttaattaac tactgataca gaaggtaaac tctgcaggat
      421 ctgtggcgag accttaggcc agtaggcgag atatctaaac cgtcattgtt tacacatgat
      481 aatctctctt ttgaatttgc tttaattgct caaaaagatt agctgaagga tatgcactac
      541 atattgatta gcaatgctaa ctagatagta tataattttc atgtgtgcct cacatatgca
      601 gtctaacagt tttagaggca cattctttat tagccaactg taaaagatca agtttggtta
      661 tgatctcatc aatcatgaca aagaccttcg actttggtaa caagaatgga gggagacaag
      721 tacaaaaaag catctttacc gtcttctagc agacatcatt gtgctcctcc attgtgagca
      781 ataatcccct catacatgca tccctgctca gagcacaagc aaactggaaa aagggagcag
      841 caataaagca gactgaa
//
LOCUS       KCLA01002112            1041 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34368upu ultra-conserved element locus uce-3584,
            sequence.
ACCESSION   KCLA01002112
VERSION     KCLA01002112.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34368upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1041
                     /note="ultra-conserved element locus uce-3584"
BASE COUNT          314 a          213 c          185 g          329 t
ORIGIN      
        1 attgcaggaa tgtgccaaac ttgagaccaa aagcaagaaa gatgagaaat tgtgctaaca
       61 ttacattgca aatgatttgt tctagatatt acagaaacat ctcaataaaa gacctttatc
      121 tacccacata tcacaggatg cagatatgaa catgtgaatt taagaaaaat acagacttct
      181 gtgtcaactg cagcacaatt gttgtatttt tctgatcgta actgtctgca cactagtatt
      241 ataaataata aacaggggtg gcgatgtggt tttattttgc ccatgttata aattaccctg
      301 tgctgtcaag agtaagggag aaacctacct cgataggaac tttaaagtgc aacttataaa
      361 ttactactat taagttaagt gctcaatatc ccactgtgca gttttgcttt gtgaattttt
      421 accttcttcc atgcacactt ttagccactg atcgcacagc ctttcagtgt tttctgcctt
      481 ttcctttaaa taaactggct ctggctcctt ccatctggtt ccccttccgt cagcaaccct
      541 gcacctgttc acacctcctc tcctgttgga ttccactgaa catttcctcc tctgccaggg
      601 ctattctggc actcgcaacc tttctgtcat tcaatccatc tgtcagaagt gaactttgtt
      661 taccgcaagc ttctgctttc ttcttcaaga agcaaagccc ctcaaggtca ttgtcaagtg
      721 aactgtcggt gtggatttga ttccacttct gctaaccagc agaagatgaa gttctttaca
      781 gtcctgcatt tgtgaagatc gggatggagt gtatgggaaa taatactgaa gaaaaaaaat
      841 tattttaatc ataatttctt aactccagta gcttatgtgt ttttcttcat acacttgtat
      901 ttgcagcttc ttgcaaggac ctgcagaatc tgagaaatgc agagctatgc aaagaagtgc
      961 aaaaggctaa taaaaagatt acaaataaaa taatgaaagc ttttgacttt tagtttaaca
     1021 taggagaaaa taggaactga a
//
LOCUS       KCLA01002113             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34384upu ultra-conserved element locus uce-1662,
            sequence.
ACCESSION   KCLA01002113
VERSION     KCLA01002113.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34384upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-1662"
BASE COUNT          189 a          153 c          124 g          182 t
ORIGIN      
        1 caccgtactg taagttgcaa actgcaatta caattcgctg caattatctc tggttgttaa
       61 tagaacgaga tagcgtgtca ctccgtaccg agtggataat ctatcatttg ttttttttcc
      121 ctcccttcat gaactcttgt ggtattccaa atgtataatc ttgttgtatt tatttcccag
      181 cggtacaaca aaatgcacag caagtgctga ctagaacaaa ctaaaaggca gtgctattga
      241 caagccgtca ctggggcggt aatgaacact ctgcctctgc tttcacctcg ccaagctaac
      301 agctttaatt tatgataaag caaacgagag acaacctcca gttttattat accctcagtg
      361 ctgtttcaaa tcaagtaatt agaaggtcaa gaggcaggtc tggaaagcca aatccaaatg
      421 caagccctct gcactgacat ttttaaaaac tcttgactgt tcaaagagca ttttatccat
      481 ccctcttctg cagggcagcg ccaggcagct tttagcaccg taaccaatct gaaacagtgt
      541 ggttcaactc tttgctgagt aattcagccc atatgttgag agggatactc agcagacaac
      601 agtcctccca caagccctta ccttataaga aaggtgcagg tgagtcta
//
LOCUS       KCLA01002114             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34400upu ultra-conserved element locus uce-8041,
            sequence.
ACCESSION   KCLA01002114
VERSION     KCLA01002114.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-8041"
BASE COUNT          171 a          149 c          188 g          245 t
ORIGIN      
        1 tcagccttac ctgagtgaga attgggtctt cttcatttaa attttatttc acaggcctga
       61 gaatgcagct ggcccctgca gtttgtttga aaactattgg tggtggatag ggtaaccatg
      121 aaattctttt ccaaagtgtc ttttttttgg atgtttaaaa aactttcaaa aaatattccc
      181 tgattttctt cctcttccca gaattttcag cagctctttg ccttcccggc catatctgcc
      241 ccgtgtcttg aaatgctctt gcctgttggt gtgtgcgtgc acatatgcct gctgcaaata
      301 ttttgtgtgt gcatatttat atcttggtgg ctgtgttgcc aaggagctct gaaagaaagc
      361 agagctgaga taacttctaa tccacctttc tgtgataatg tggcgcaagt gaaaaaagcc
      421 aggggtgtat ctccactcta gctgtgctct aggtttggta gactggagcc tttaacaggc
      481 acttgggact tttctgcctt gggtcctgcg cttggcagca gagaaagcaa atacctggat
      541 gactggaaac tgtaggtctt tgaagaagag ttagaaagta aatgaataga gctggttgga
      601 tctgggcagt cagccactgt cttcagtcat ctgagcctgc tatcagagtg ctctgttaat
      661 ttttctcatc tgttcttgtg gagaagggct catggagttg cgggggaggg gcacaatctg
      721 tttgcacctc tggtatatcc ttaggtgtga gtg
//
LOCUS       KCLA01002115             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34416upu ultra-conserved element locus uce-3291,
            sequence.
ACCESSION   KCLA01002115
VERSION     KCLA01002115.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-3291"
BASE COUNT          185 a          116 c          135 g          228 t
ORIGIN      
        1 tatctgttgt ttggcaattt tgctaagtct gtcttcatta cttcaacatt gtgcatttgc
       61 taatttggaa gccccttcct attgacagct ccgctccata cacctgcaag caatttgcag
      121 agctccaata taggagaatt gcagagatgg cagctcgcac ctattttttt tttcttcgct
      181 tttctcaatg cacagcaaat ttggctttca gtgcgttatc tcttttgtta atgcaaaaag
      241 attccctggg cgaaaaaatt gctcataatt accagagaga tggggaaact gcattagaat
      301 aaataaacct gaaattactg taattatgtt gtgtttgatg ggctcggctt gtaatcaaga
      361 agagaataca gtgaaatgat gctgaccctc ttgggtttgc agctgtacgc gcactttggg
      421 gtcttttttt gcagaaaaga gtcattttga tcatcattaa gctgtgtgta acctatttca
      481 ggagtgtttg aaaatgaggg gcattttttt ttttccccaa caaggaaaaa atatatccca
      541 aaattgcatt ttgtcattta caggctcatc cataaggttg tgtttgcagg gtgacgattg
      601 ttaaaggtat aatattcgaa atcaggactt aatcattgta atgaggtatt gtttcaatat
      661 aagc
//
LOCUS       KCLA01002116             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34432upu ultra-conserved element locus uce-7627,
            sequence.
ACCESSION   KCLA01002116
VERSION     KCLA01002116.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7627"
BASE COUNT          215 a          124 c          152 g          183 t
ORIGIN      
        1 ttattattta atcatatgaa agttggggtt tatctggaga aaatatttat agtagtttta
       61 atacgcggga tccgttcttg acagaaatga tgaaacagat ttatcaccct tgacaaatta
      121 tattgcaaaa catcccctcc ccactgcttc caacggaaag attaacagca cacacaactg
      181 gaacagcacc tgggattctc atgtctttag accaatactg aggcatcctc caactcctcc
      241 tcacggagtc gacacgggag ttcgcccgtg agttacttgt aggagtaatt ctatgagtga
      301 cggagacctg tagcccttta aatccaacta agtagtgttt tattaaagct cccagcaaat
      361 caatctaaat ccaaggataa taaagcccta atcaggtggt agaaaaaata ataggttgtc
      421 atgcatgagg aaaaataggc aatcatggaa tgttttcttt aattaggttg ggtaaagtgg
      481 aaggactgag taggaactgg caagacattc atcatgagca aggtgggaaa ttatttagat
      541 tactgaggaa ggagaattga gtgggaaaca gtaacatttg actggacaga aaattaaagc
      601 tggtttgcta ttcgtgtcac tcactcttgc tgtctcgcag gcaggtatgg ctttgccaag
      661 gagcgggaat ccag
//
LOCUS       KCLA01002117             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34448upu ultra-conserved element locus uce-4641,
            sequence.
ACCESSION   KCLA01002117
VERSION     KCLA01002117.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34448upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-4641"
BASE COUNT          269 a          217 c          177 g          260 t
ORIGIN      
        1 acaccactgc agcaggagga cccacatggc cgatctctta aaccagggac ccctaatgca
       61 tctcagcaac aggatgaaaa gcagccatga gctgccaccg tgcagaattc acatcttagc
      121 tgcacgtgct gcctgcaggc ttggtaccct gctctgtctt aaatgctttc tgcaagagga
      181 aggagaacac gcacaaagcc tatttaattc agcattgtgt aggaaggacg gactctgtcc
      241 caagtgagat ggaagactgc acatctcctc cagatggtga gtttttttct taaggcagaa
      301 gaaagtgagc aggtgtgagc gtgtggctta cctgtattgg ttttaatcag caactttaag
      361 caaactcagt gttctcatca gaaaagagca aaaataaaca gctgagcact gtgattcatt
      421 tacacttcaa atatactttg agttggttat tcctcaatta atcaaatagc tggtatatcc
      481 ctaaagtagt ataaagtgac acgctgtgtg aaatcaattt tcccttccaa aatcattaca
      541 ttcagtagcc tgtgactaca tccctgctaa ttctagtagc agtcctttca tcctccatta
      601 actttggcac gcctaacagg ctgtcaaaaa taatttccca gaacgtaaat aattcagaaa
      661 ttaaaaatta ataaataata acagagagct actgggagat agactgggtc aattagtcag
      721 ctctgcattc tgtttcttcg cagcaggggg gcagccacat tcgttactag aatctttcct
      781 ccgattccta ggtctgattt acggctcttc attactggat ccagtcagac acaattacct
      841 ccatcactat ctcagttcct aacttcaaag aaacacacat tttcttgtct gctttttttc
      901 tccttgcagc agcctcagct tga
//
LOCUS       KCLA01002118             967 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34462upu ultra-conserved element locus uce-2639,
            sequence.
ACCESSION   KCLA01002118
VERSION     KCLA01002118.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>967
                     /note="ultra-conserved element locus uce-2639"
BASE COUNT          337 a          185 c          166 g          279 t
ORIGIN      
        1 ttttgtttca atcaaggcat ataatcttat attatggtgc caggtatgca caagtcacat
       61 tgtgctccta tctcaaacaa ggtaagtgca aacatacaga tttattcaga tttgcaagca
      121 tgcaacctgt tacttaacta cattaatacc ttctcctaca ccaaactacc atctatatgt
      181 ttgctttcac gaacccagaa tctctctttt caggactcct aaaacaagca gtgtctttga
      241 gttctgaaat gacacaaata tcaagaaagt ccacattgtg caagaaagca gcagctatgt
      301 ttttcaactc ggactaaaaa agaaaagaga aaaacaaaaa ccgttcactg aacagcagat
      361 tagcagtaac gttcctcatg aatcgataag agtgcctgat gctgaatatc taacagcaaa
      421 tgctgaattt agatttaata ttttaagggt ttataggaga ttaagcttct tgctgtgctg
      481 gtctcttcaa atccctgatc tgtttaacta aataggtctt ctcatcatta aattgttcgt
      541 cctcggttct gtcattctga aacttgctga ggaactcaat aagtttggtc tggttcttta
      601 gaaggatgtc taatataggc tgtgtcttgt taggattggc tacaaacacc tgcaagaaaa
      661 caaaaggcat ttagcgtaaa agaggagaca gaagattaag ttaaaaacaa acctaggcaa
      721 taaaatagcg atgacaatac ttgttttaca ttccagtatc actacagaaa agataatgga
      781 gtaaacgtaa gattaaaatt tcattactcc ttacaatggg agctgaacac tagtaccaaa
      841 ataaatttat tgtgtaggca gccaaaatat cctctgctga aaccaccaaa gacatccaga
      901 aattctgtag caaaatccta tctacagcat cggatgggta tctgaaagct cactgaaaac
      961 ctgtaaa
//
LOCUS       KCLA01002119            1050 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34477upu ultra-conserved element locus uce-83,
            sequence.
ACCESSION   KCLA01002119
VERSION     KCLA01002119.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1050)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1050
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1050
                     /note="ultra-conserved element locus uce-83"
BASE COUNT          316 a          201 c          228 g          305 t
ORIGIN      
        1 gccagacgtt gtgatattaa aaacacagac aatattttaa aagagtttag cattataaaa
       61 aaaaatccaa actttccaac agttgctcct catgacagtt tccatttctt tccctcctcc
      121 tgacagttcc cataatgact ttaatcatac agtctggaaa tggagcgggt tactgaacag
      181 caacaaactc actggtcaat gtcggtgtca gttttctggg agcaggactt tttgagcatc
      241 aaggaactca tttgaacagc ctgctggaaa agtgttaagt gcattaactc cctgtcaatc
      301 acggttttag catgctggcc gtattattat tatttggctc gagacattcc attgaaactt
      361 atttgtatag tattcctacc tgtgtacctt gtgtgactaa tgatgattgt ttatggagaa
      421 gtgcctgtcc aattattttt gaaggaacac aagaatgcag aatgactgga agcatcaggt
      481 ttttgccaga gaatgcctca ggtaagagga gaatggctag aggctataag gaatcacaag
      541 agacaagtca gagtcgtaaa ttgggaagct gacatatctc atctaatata cttgctaact
      601 aggcctttaa aaaccttgac atttaactaa gtttgtggaa aagttataga tttcgtcctt
      661 ttctattggc tataactcat taatatgatg aacgggggtg tttataaccg ttgccagcaa
      721 tagcagacca gcgcgtggga tcatttagcg atccagttaa gcgcctaaca accgatcggt
      781 tgtttaagga gatcgcgcct ttttcaaagt caagtcagta gaattgatac cgcgagttat
      841 ttaccctttt gcaagttcag cctgtgaaag gggatgaaag aacgctggta tgcagctggg
      901 gtattgcaac aacactttgg aagtgctggt ctgctcagaa cggactgcaa tatttactct
      961 aacactgaaa tttggggtgg cttcaagaaa caaagacgat aggataaacc caaactttgc
     1021 agggaatgct gcctcctaac tccgatttga
//
LOCUS       KCLA01002120             834 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34492upu ultra-conserved element locus uce-5539,
            sequence.
ACCESSION   KCLA01002120
VERSION     KCLA01002120.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>834
                     /note="ultra-conserved element locus uce-5539"
BASE COUNT          257 a          158 c          167 g          252 t
ORIGIN      
        1 agagccagag attttcacgc aacctggtca tacttaacta ggaccacaca gagcagggga
       61 gagtttttaa taggctgttt gggaaagagt gaaggcccta atgaatgaag tgtgtagact
      121 ttgagatctt tactgtgagc cttatttgct tctggtaaca agctaacctc ctctgccatt
      181 ccctccccct tcagttttaa tttgatagaa agccagcagc gctgcagttg tatgcaaagc
      241 ctccagcaaa ctcaaaaaag attattattt ctcactttgt ctttaccgat agctttaaaa
      301 ttttatgcat cagaatgcag gattagccga agacacaaat gcaacacaac actgacaaaa
      361 tcagatgaaa aatctccctc ttttagcaac gaagaaacga gatttatcat cagaaaagca
      421 ttctcttttc attttctgaa aggtgctttt tgacagaccc tttgcagtgg acgtcatgct
      481 cacaaaacat gctgtcacgg ggctatttga atatggtgac aggctcatta tcatgttgaa
      541 gacaactgac aacattgcag actagaaatg gacaggcttg ccaatcagct gttgaaagga
      601 gtgcagttga aatagaggtt ttttttgttc tgagaacagt agtacaaatt gactacatta
      661 attcttttta ttacagttgc atacactgta gttaagggtc cgtcactgtt tccattataa
      721 atccctgttt tcaagggttt attggtagac cataaaaaat ggttcctgtt gaaattttgc
      781 attaaaaata tatattatcc taacagagca aaatttctgt ggtaactggg gggg
//
LOCUS       KCLA01002121             545 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34508upu ultra-conserved element locus uce-6519,
            sequence.
ACCESSION   KCLA01002121
VERSION     KCLA01002121.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 545)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..545
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>545
                     /note="ultra-conserved element locus uce-6519"
BASE COUNT          173 a          103 c           92 g          177 t
ORIGIN      
        1 ccatcatctc aaattatctt atttaccccc tgaattctga gcaggtacca ttactgcact
       61 cagttgtcca catcactcgt ttgaagggaa aattaattct gaattactgg ccctataact
      121 gcctacttct tcacatcatc tgtcagcaaa ataagcagac aaaagctggc taagtggatt
      181 tctgttagct gccattcaaa aggataggaa caagtgttga atgaagcgtc ttttttcaac
      241 tgctagtgaa caatacatat aggagaagtt taattgctta catccatctg cacccttgtc
      301 atttcttggc tttattgatt ttaatgaaaa tattaagtgc acttcaggag cagcagctaa
      361 gtgacatgtt gattgaaata cacatgaaaa ggtataatgg aagtacgcta ttacagttct
      421 aatagaatct gaaagaatct agagcagctt ttcccccttc tattcttatg catatagcaa
      481 gttctgaaat gagtaatttg aagttgaata aatgtttgtt ttaaaagtct ttcaccttaa
      541 taacc
//
LOCUS       KCLA01002122             514 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34523upu ultra-conserved element locus uce-912,
            sequence.
ACCESSION   KCLA01002122
VERSION     KCLA01002122.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 514)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..514
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34523upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>514
                     /note="ultra-conserved element locus uce-912"
BASE COUNT          148 a           98 c           93 g          175 t
ORIGIN      
        1 tttctcaaat atttaaacaa tttttttttt tatatacata tttctttttt ctctctgttt
       61 gtaataagat taattatgtg tggtgcacca ctgcttatcc ccatgaaaga aaatctaaaa
      121 cgagggattt cagcttcaag aagactattt tgtcctgttt ccgatgttct aaagggatta
      181 atttaccatg tcgtatagcc ctggaagact gtgataattg aaaacatcca tattcattgc
      241 atgttcaaag ggatctgtct gactttgtaa tgtaaaaagt gcatttttaa cctgaacggg
      301 gacctgcatc tggtattgct taatcctatt agtctgacag ttccaaagct ttagtgtata
      361 atcattagct cgtgttaatc ctcagacatg cctccagctt cagcctgtca gaaggagtcc
      421 ctgcagggaa aatgtggagg tgctgatagc acaacaccaa ctaatcttat cttaaattct
      481 agcagcagcc actatctgtg atagccaggg aatt
//
LOCUS       KCLA01002123             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34539upu ultra-conserved element locus uce-7044,
            sequence.
ACCESSION   KCLA01002123
VERSION     KCLA01002123.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34539upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-7044"
BASE COUNT          208 a          113 c          104 g          223 t
ORIGIN      
        1 ctgattttcc tttaaaacca ggtaacccct tattatatgt aattattaaa cttgaagttt
       61 cagcaaacgt ttaaaatcca gtatgttgta ggaggtggta taaactgcac ctggaagtga
      121 catctttgca atactcttgt acataggagg ctcaaagcta tttcttgcca gcagcagtga
      181 tccacagact ttagatgttg ttaaaaagct tacaatatca gcagggcaac tgctgcctcc
      241 attagaaaca tgatactaag atgctgatta ataccaggag ggggctttaa tcagccaaag
      301 ccatatgcta tttaacttca gatgaaagtg caaatgataa tcattatttc agaaaggatg
      361 tatttaaaag aagagcagaa cagcaagtgg catcttttta tcattagagc ttcttcatgc
      421 agcccccttt ttctaaagct ttataagctt ttatgaacat ctggatcatt tcttcattat
      481 ataggcttcc aatatcatta tgtttgatgt agcattttca gtagagctat gctaaacttc
      541 taaatataca attaattcct attaattaga gttttcaaac tggtgaaatt atccatcatt
      601 aacttaatca cttgtatttt atcttgaaat tgtattcact cttttata
//
LOCUS       KCLA01002124             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34555upu ultra-conserved element locus uce-1395,
            sequence.
ACCESSION   KCLA01002124
VERSION     KCLA01002124.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-1395"
BASE COUNT          237 a          156 c          218 g          248 t
ORIGIN      
        1 tttgatgtcc tccaatccct aacaccctgt gatttactcc tgaaaaaagt tctatgtgtt
       61 tgttcctgct ttccatcaca ttagcccttt catatggtca caacctggtg acagacagtt
      121 gaatgtaggg aagaaaatta tgggtaaccg gaatccagtg gtttttcttt gagtgattgt
      181 tataggggac ttcctagttc cccactgcca tgtgtagccg tgtggaggga gggagagtgt
      241 aaagaggtaa tggagggaaa agaaatctta ccttggcttc accagtggca acatgagcat
      301 atgcaattat aagatagctg gcagatgaca gagttagtta atgtaacaag ccctgtaaag
      361 catttagcca cattctagtg tttaatcagc tgtgtaaagt gcaatatcta tctttcaatt
      421 ttatgccatt aagggagaca agattttgat taggtactta atctgggcaa gaggaaaaca
      481 ggcccagagc aagtccacaa taggcagcag aagggacatt caacgaagga ttcgataaaa
      541 gagaaagaca gaaatttaac ataaaagaga attagtgcag ctcctttcaa tttagtgcac
      601 gggtttttat ggactaatca attagaggct gtggctgtgc tgctgggaag tggtgccgtg
      661 ttagaggctt tgccatatta attctgttca ttacaccgag gtcagatgga gtgctttgga
      721 gaagcctcgc tgctgagtgg gtcacagcgt gggtgtcgtc cctttgttca gaaggggtaa
      781 ctggctcagc gagcaggcaa ggacagttgt ctgtgtagcg agcacatgca ggttcttttg
      841 ctttctctta ttcattctt
//
LOCUS       KCLA01002125             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34571upu ultra-conserved element locus uce-5667,
            sequence.
ACCESSION   KCLA01002125
VERSION     KCLA01002125.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34571upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-5667"
BASE COUNT          204 a          132 c          167 g          139 t
ORIGIN      
        1 tgagattctt gtgctgaggc aacgagttac agttgttgct ataacacagc aacaatgcaa
       61 ggactgaaat aaacctcata ctgtgccata aacacgtgtg ttttatagag tgacattcct
      121 taattgccct gatgctgcac acagagaaat cctgtacata aagctgcaga gcggcctttg
      181 caaagcctga atccaagaac taaagcggtg aaaggctcag agaggtcacc agtgcctgtg
      241 agcctggcag agctaactaa aagaccagta gcagctggca ggaaatgggt aagaaagctg
      301 accacagata aactgtagga tgctcaagag tagcagaaga tatactctgg gagaggaagc
      361 cgagctgtca ggtcacactg cagtctagtg catacagtac atacagtccg ctattgaagt
      421 atgcagccac cagataatgg tcaggggaca cagctgtcag gggacgatga agtaactgag
      481 gagcctgaag cagagtgtgg tacagctgcg gatgtttctg ttgagcagga taaagcctgc
      541 ctgtctcaag ggcaccatag caaactcagt gtcatgtgag cagcactaaa taattaggtt
      601 caggatgctt atttaaatca gcgttgatca aaacaagata cc
//
LOCUS       KCLA01002126             328 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34587upu ultra-conserved element locus uce-6105,
            sequence.
ACCESSION   KCLA01002126
VERSION     KCLA01002126.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 328)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34587upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>328
                     /note="ultra-conserved element locus uce-6105"
BASE COUNT           92 a           75 c           93 g           68 t
ORIGIN      
        1 aaatacagaa cacagtgccc cattgagagg gcgttgtgcg agctgaactc ccctcattga
       61 tagttttcca aaacacacag ctgcaataat ctttatccag gagaagggaa taaattaagc
      121 ctgaacacct ctgcatatag tgcagtacag tgtagggctc tgcaccccgc gtaacctcgg
      181 ggcggtaatg gaaagcggga ggaggcgcaa gtggaaaacc tctgtgagca gcaaacactt
      241 tcttcttcag aaagcgcaga cgggaagagg agctcatgga gcagaggcag tttagccact
      301 gggatggctt gtttctggag cggtctgc
//
LOCUS       KCLA01002127            1054 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34618upu ultra-conserved element locus uce-1530,
            sequence.
ACCESSION   KCLA01002127
VERSION     KCLA01002127.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34618upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1054
                     /note="ultra-conserved element locus uce-1530"
BASE COUNT          304 a          217 c          189 g          344 t
ORIGIN      
        1 acaaactcta ttaaattcaa aactcaggta aaaaacatac aaacctgaaa ttattttctt
       61 catgactata ttctgtgatt ttttttgtca cagtttgtaa aggatttttt taaaactcaa
      121 atgctgtagg ctgtctagcc taacaattct tatttgtatt tgcaaaacct acatgccttt
      181 cttatagcat gcgttgagga tattggtatg cacagacaca ttctaatatt gtctaccaca
      241 acaaaagcta tcattctggc aaaaagaggc aggaaaatct aacactccta ccatgaccaa
      301 gatggtaaga gctgctgcag ttgccaaata cgatacacaa aacatttaat ttataatagt
      361 tagaacttgg cccttgacca agcccaaaga actatgtctt atttcacttg ctcttgaata
      421 tgtctctttc agagataaat gactgtgctg tttgccagtt ctctcctctg tttggcgttt
      481 tgtttagctc tgcttgcgac aagccaagag ttgatgcatc tgcttgaatg tgtaatatac
      541 atctttggtc agcttagctt ttttccttga caatattatg tcaaacaatc acatcacaac
      601 tggctctgat ctctttgttg ttagctaata aattaaagag tatttattat ctgcaatcct
      661 tttttccctt ttaatggtga cacatttgtg gtgaattaca gggcagcttt ataaactagg
      721 ctgtgggcca gtatcagccc ctgtgttcat gtgaatgttc cctctcccac ttggcctccc
      781 agcctggtgg taaatcaagg cagctgtcac agcacactaa gttagtgtgc gtcattgggg
      841 agagcaggaa gcgttggggg tataattctg tccatcaaac taatatgtta tatcagtagc
      901 tttgtaatct tctgctataa gttatgggaa gtgacaccta agaattcact ttgaaagcaa
      961 tgtgttcctc agactttaag ccaaaacaga cccaatctgc agcaagagtt cctctgttta
     1021 tacgagcaga tttgtagcag ctaaccaccc catc
//
LOCUS       KCLA01002128            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34633upu ultra-conserved element locus uce-4789,
            sequence.
ACCESSION   KCLA01002128
VERSION     KCLA01002128.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34633upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-4789"
BASE COUNT          283 a          228 c          155 g          369 t
ORIGIN      
        1 tgtattgcat atgtgtgtat atacataaat gtatgactat gtataaacac aagtatgatt
       61 ttaaatcatt tttctttatt aaactaactc aaagcattgt gtacttgacg agatttttaa
      121 gccataaact gttctcaatt ttttcttttg catacatgta aattttttgt cacatctcat
      181 gcctttcatt tggcttaatt gtttcattgt agataatcag catctgtaga ctgctgaatg
      241 ggtaaaacaa catttccttg cctctggcct catccccagt ctcgcactca aggaatagct
      301 gctggccctg ccccaatccc atcctggtgt ttggatcatg ctgctgtcag ccaggtcctt
      361 tggcacagga ttactgaata tttttccacc ttcttctggc aggattccct tcaatgaaga
      421 tcccaatccc aatactcatt catcaggacc ctccacccct ctgaaaaacc aaacctattc
      481 cttttcacct tccaagtcct acagtcgaca gtcctcttct tctgacacag atttgagttt
      541 gactcccaaa actggtaagg cacttccacc cactttttgt ttcatttatg tttttatatc
      601 ttcattcaat ccctttttgc tttttggcat taaagttacc aaaatgatgt gaaaattgga
      661 aacttcagat agcgcacctc agatttgaaa aggtttctgt agggtagaaa tttaatcctg
      721 cctatatctc cactattctg gataacatta aactaccatt tgtaacacaa cttcattcaa
      781 gtggaaataa aaatctcgga gccttaagga gtcctagtta tttccgcctt tttatttcct
      841 ccatttcata ttacatggga atacattttt cactgcagta ttttaaggac aatgttatta
      901 aatctatgta gtttttgcaa atgtggtact agaaatgtgg cagctgctgc ctctgttctc
      961 cttgccatat agaaatggat ttacatatgc aatatttttg aaagtatcca ggcatcctca
     1021 aaaagcattt ttctt
//
LOCUS       KCLA01002129            1104 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34649upu ultra-conserved element locus uce-7673,
            sequence.
ACCESSION   KCLA01002129
VERSION     KCLA01002129.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1104
                     /note="ultra-conserved element locus uce-7673"
BASE COUNT          279 a          240 c          231 g          354 t
ORIGIN      
        1 gtgacttcag aaaggtcctt ttttttttaa ggggctgtga taatgacagt tgttctatct
       61 aaaatgtaca gtagtagctg ttgtgccgaa tagcttccaa gatgtggtct tttcgtttat
      121 taaatagatg tttctgcctc aaatttcaaa ataaaaaagg tctgggaagc ttaaatagtt
      181 atgcacagca caattcttgt ggcttttggt ctgaagtgag gtgtgttagt caaacaacct
      241 cacccgtttt tagactaatc ccttacagat aattaaaaat ttggactact gcaattattg
      301 tgcaagcaca aaatgtttat gaatcataca ttattacagc ctcccccaag ccctggattc
      361 tagctcagtt agagagcttt ttccacaagt gtgtgttagc tttttggaca tgttagacac
      421 ccaggaaatc ccccttctcg taacattctc cgcttggatc tgatctcaac agggtgtcgt
      481 agtcaatctt cagcacagtt cttaagtgga gaccaagaac cctgggcctt tagaggtggt
      541 ctagcaggag agttccaggt atcaatatga cttcacaact gaatgacatt ttctttgttt
      601 tatgagaaac cttttgttgc acatcagagg tctggaagga ttggtctgcc gaaggctttc
      661 tggtccaaag cccactagcc ttacagcttg gtttaaaata attttcctcc cctttctaca
      721 gtaatttctc aaggagatgc tgcctgtccc acgcgcatgc gaagcgcagc ggctttagtt
      781 gtacatttca tattgtttct ttgcaggtcg cacagcattt ttatctgcgc ccgcaattgc
      841 acaatgcgcg catgcttgtc tgccgatggg aattccatga gcaaaaagac caaattttgg
      901 ttcctctcaa aataaagctg tgatgcgctt tgttgcagag atctcaattg gcacacgttc
      961 ttaaatggct gtttatacca tgttcagatt tgttcatgga tttttcaggc gctgtacttt
     1021 tcccccctca caggtgctct gcgcgcagca aattgaatca gcgcattgct tttgggataa
     1081 agcgtctcct ctggccagtt aacc
//
LOCUS       KCLA01002130             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34665upu ultra-conserved element locus uce-1133,
            sequence.
ACCESSION   KCLA01002130
VERSION     KCLA01002130.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34665upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-1133"
BASE COUNT          195 a          101 c          105 g          208 t
ORIGIN      
        1 gcagcatggt gtcaagaata aactttaaaa gggctctccg aaagtaatgc ttggatggta
       61 ttcatttgac cttcagtgac agagcttatg ccttgcaaat tgattaatat agatacaata
      121 tcaaatcatt tttcatacaa ttttttaatg tttgttaaat gctggagcag tatgtaaaca
      181 gagtatttgg catttttatt aggctgtgga actcagtcat ttcctttgca acaacatctc
      241 ataaactatt ttgacagtct aataaactat aaaaagctgt ggtaaaaact ggctctgaat
      301 gttataaccg tacaaaatgg aaagagcaag agaaaacatc tatcactgag attattatca
      361 ctgttaccat ggcaacctgg ttgcaatggc aatatctcca tggttctgct gtttgttatc
      421 atctttcttg attttacatc attgaaattg tagtaattac actctgcctg atgaaaaatg
      481 catgctgtca tggcaactaa gtcaaatatt cttaatcatt tcacctcttc aatctaaaat
      541 gtaattgttt gtcagtaaaa taggttacac agaaggctcc tatggacgta tgattgcctt
      601 aagtgtttt
//
LOCUS       KCLA01002131             487 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34680upu ultra-conserved element locus uce-748,
            sequence.
ACCESSION   KCLA01002131
VERSION     KCLA01002131.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 487)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..487
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>487
                     /note="ultra-conserved element locus uce-748"
BASE COUNT          130 a          110 c          113 g          134 t
ORIGIN      
        1 aagacgtcta aatggaactg aaatcgaccc tattaaccga ctcgattctc cagccctcct
       61 ttcattgact tctttttggg aaaagaaaaa ggtagcgccg tggctccatg atttctgctt
      121 agtgcacagg attagcaatg aaatctattt ctgctggcct tgtggccata tgcctgcaat
      181 atgtggaaat atatttgctt gctttttttt gattcctttt gttcccagta ctgactgcct
      241 gtcagagtga gccctccaga ttcctgtgtg ctggtatcca tgggctcttt cttgccaagc
      301 tgccagtctg gagcgtcaca ccttactgcc tttaaagatt gccctgcaga gatagaggaa
      361 aatggcaatt tttacatgat gcagtctggc ggcccaggag atttgaagtc agaactggtg
      421 ccaagattta cccaggagag caagcagagg caaaacacag aacctgggcc aaaggaaaaa
      481 aaaagag
//
LOCUS       KCLA01002132             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34695upu ultra-conserved element locus uce-7775,
            sequence.
ACCESSION   KCLA01002132
VERSION     KCLA01002132.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34695upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7775"
BASE COUNT          223 a          120 c          102 g          229 t
ORIGIN      
        1 aataaagaaa gcatgtttac taattaagct ttattctcat tggtccatgc taattgcaaa
       61 atatcaatcc atctcactta tgaatatgca aatatatgtc agagtggcac aagtttccag
      121 cacacagtac tctgctagct ttaattagat caaaagtggg tccagctcaa ttcaacaaga
      181 ttggccctac tctttaatca ggaaaataag tttgtctcct aacagtatct tcttttgaca
      241 gtcagcaaac actaattaac agacactgct atattaattg cattactcca ctgtattctt
      301 atcagctagc tgatgttgcc tgtttgctaa tgcaaatagt tgcttctttg gtaaagtcaa
      361 cttgcaaaag tctttctaat gctaactagc aatcaatgca tataagattt ctaagatttc
      421 tgtagggaat tctgcataat agatgttttc tgtcttttga ggtatctacg gccatttagt
      481 ataattattc cttagagctg tacctatcat attatcagct tttacagagg ataaagaaca
      541 caacttattt gtttaagaac aaaggacgat aatcatttcc tttaggaatc actaaatcac
      601 taagttaaat gaagatgtat gacaatggaa aacttgcatt tatagtaatt atgccctaaa
      661 gattgcttta acat
//
LOCUS       KCLA01002133            1052 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34711upu ultra-conserved element locus uce-6084,
            sequence.
ACCESSION   KCLA01002133
VERSION     KCLA01002133.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1052)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1052)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1052
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34711upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1052
                     /note="ultra-conserved element locus uce-6084"
BASE COUNT          274 a          244 c          272 g          262 t
ORIGIN      
        1 acaggacaga aagagatgag ggtgcacagg gcctgggaat cctcctgcac ggctccatgg
       61 ggaagaaaag gagttgaatg aagcaacaag ttctgcacac ctgggtgaca gacagaactt
      121 cccagcattt catcctcaaa caccagtgac tgattttttc ctttcctctt tttttttaaa
      181 aggtgcagca aagccctggt ggaaatcagg taccagcact acatcagcag tggaagagga
      241 aggagcctgg aagcttgttc taaactggaa gcatgcagag aacaacgctt gtttttccca
      301 gctgccagaa gaagatgcag tcaggacatg gactttcacc ccatctctgc cccctaaacc
      361 ccatcccaaa agcagggagg ggaaaggact aatgagctgc tgatagccgg agagcagatc
      421 gcagaggctc cactccgtct gcccagtgtt cagactacct gttcaggact acgagattgt
      481 acagtagtct gcacattggt taggctgtgc tgggatacac ctcacactgc cagtgctgca
      541 cggggacggc tacacctgca cggcagaggg acatgcttgg acagggtggg ctgtggggac
      601 agctgcatgc aaagttccct cactgctcag cctgggggta tataatcctt cggagccatg
      661 cttgatgatc acttgtacct gcctgttcac ctgtctactc acaacccctt tatttcttct
      721 caatctcttt catcccttta tttctttcag cttcattcac ttgtcccagg gtagctggga
      781 tcaggatggc ttgtgtttca tgtgctaaac tttgccatga aatgcagaga taaacacatg
      841 ggcctggcag ttcactgtgc tgtgctttgc tacctgagaa tgcaggatca agcacagaaa
      901 ggtgactgga gaaagggggt ttcatattgt aaaaatttct ggtgattaac agtaagaaaa
      961 ccccactaag agctggaagt tggaggtttg gatgttctgg aagttgtgtt tgctttgaca
     1021 gttatctgga actagaagat gagaaacagt ga
//
LOCUS       KCLA01002134             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34727upu ultra-conserved element locus uce-2732,
            sequence.
ACCESSION   KCLA01002134
VERSION     KCLA01002134.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34727upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-2732"
BASE COUNT          130 a           91 c          174 g          199 t
ORIGIN      
        1 gggggggagt ggtggtgggg ggaaaaagcc tcgagattgg taattttctt ttgctggact
       61 gcgcaatagg tatggtaatt ttaaaagagg gtgatttata tgagcttcag taaatgctgc
      121 atattgtatt tcaaagagtt tcctgtcatg acctcataaa aagaggagga ggcttgtatg
      181 tgttgcagcg cctagtatat gtcgattttg ttgcatcgtt gggcagcagc gctgtaagaa
      241 ggaatgtcag cttttacata acgctctttt tgcttttgac tctgtgaggg gctgtaaggg
      301 tccatctttg tgatcacaga tggagtggaa tggcttgaaa atggtaagtg aatggggaga
      361 gcctgctcgt ggggttttgt ctcgcttctc atgtgcctcg tggatgtctt ttgttcgggg
      421 tggcagattg tgagtcatta aataaaatta gagagccttg ctttatttta ttgcgggata
      481 tgtctgcctg tgcgggtata tatctttatc tatctaatgt atgtaactgt gatggcactt
      541 cacggcgttt ccattgaacg ttgcctttca gtcgagcgag gatggtctct gctg
//
LOCUS       KCLA01002135             865 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34743upu ultra-conserved element locus uce-3489,
            sequence.
ACCESSION   KCLA01002135
VERSION     KCLA01002135.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34743upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>865
                     /note="ultra-conserved element locus uce-3489"
BASE COUNT          320 a          160 c          166 g          219 t
ORIGIN      
        1 acaaagagcc aagattttca agaatgagtg ttaaagccat aacgctaaat aagctgggct
       61 catttaaaaa gcaaccctga aattcttcct actcctgcat ccattttaaa gtcgccaata
      121 agctctagtc agactgcaga aaaactgttt ctaccagcag gcttctgaat atgcataatg
      181 caaataaagc taattacatt tcaaaaataa taatctatgt gcaattaaga tactggcaac
      241 attttaatgc aaagaactgt ttaaatatac taacatccta gtcttgggat atccagtcaa
      301 gctacgcaaa gagatgtgtt tgtcccttgc atactcccaa atgtggaagt aggatcagaa
      361 actggatctg gaagaaaggg taaacagcat gttagtcaaa ttcacagagg atattatgtt
      421 tggatatgtt gcaaacatta gtgaagacaa atacataaat gacctagaag gaaaacaaaa
      481 ttggcttggt aacaaaaatg tctcatgata aacaacttca aacagtcaat gcagaggaaa
      541 cacaaggata ggggaggaaa aagtaaaatg aaagaaactt aacagcggca agagtggtca
      601 gtcagctgaa tatttgcatt taaaaacagt ttggaggcat aaaacagagc agggaaatga
      661 aagttctttc tgcagtctca gagccagtaa caatagccat ctccttgcac aattgccaga
      721 aactgaaaaa ttctccttca ctcccagcaa gcagaaagct cttctcaatg gcaaatcagg
      781 ttctgcagga ggtaggtttt aatttttttc cagcaaagtt aacatacggt tagcataagc
      841 ctacgcagca ggttcttcca gtact
//
LOCUS       KCLA01002136            1032 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34759upu ultra-conserved element locus uce-7295,
            sequence.
ACCESSION   KCLA01002136
VERSION     KCLA01002136.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34759upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1032
                     /note="ultra-conserved element locus uce-7295"
BASE COUNT          296 a          247 c          186 g          303 t
ORIGIN      
        1 ggatccagga gcactgctta cagctttctc tgcacaagat accgtcactg tactgtccag
       61 tcccacagaa cattctagta aggaggctga tctgtacatg gaacattccc tatcaagcct
      121 gcttctcttc aacattcatc cacctctacc tgtgagacca ggatgagtgt gtcccctcca
      181 ccaaaagaaa agaatagagc aaataatcaa ggccacacca aaaatttaca atacattttt
      241 ttcccccttt tgagaatgct tttctgtaca agtgtttttt gtactctaat actgtttaaa
      301 aagctatcag cttcctcaag atggccaccg taggcatgat aatattccag gaacacttaa
      361 atttttacaa taaattttag gtccatatca ttccatcact ttatatgcac tggtctctca
      421 tctgatttta ggcgttttct acgcggttgt ataaaatctt catcggagtc ctcagttatt
      481 tcgccatcgt cctcttcctg ctcaaattca ggcaaaggct ggaaggtcct gtctgggtag
      541 atctctgtaa gtttatcttc aaagtacaat gcaactgcct tccctgcctg tgctacttct
      601 gaatcagcct gcgaataaaa gaagacagga atattcacct gttggaaatg cacatccctt
      661 caccaagtgt gcgtggtctg aaacgcttac cttcaaatta atttcttgtg tttctgcata
      721 aacttgaaca actttcatca tctaaaaagg ataccagagt caaaaagaag gaaatgataa
      781 tcctttctca agtcacgaga ttgcacaggg ttgggtgact aacggcagcc gtaacaacac
      841 aagtttgtta cggactgtac ctcttcagtt ctcaaactta gcggaagcag gtttaaaaca
      901 gtctcgggag gtgacacgag gtaaataaag cttcaacaga acacacaacc tccgtacaga
      961 tagtgcctct tcaggctctt tcagagctgt gctctactca tgactgcttt cgtcattaca
     1021 aatcttagtt gc
//
LOCUS       KCLA01002137             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34773upu ultra-conserved element locus uce-6171,
            sequence.
ACCESSION   KCLA01002137
VERSION     KCLA01002137.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-6171"
BASE COUNT          204 a           93 c          102 g          162 t
ORIGIN      
        1 gactgctggg ttaatctcga cttttctaac ctaaatagat ggttcttgat gaggtgttaa
       61 gtaaagcatt gcctgtattc ttaactaagt catcactgat tgctgttaag gtttatatga
      121 aaaggtttaa cttcttcata atctatcaag gagcaaagct gatctaattt gtgtgcacag
      181 caccacagac catggacttt taatgaacag tacacttgac agctttaata aaacatagca
      241 tttgccagca gagataatta gaattgaagc agcaaaattc tagtgtttgg caacacagat
      301 gaaacaactt cattaaaatg tacagctttg gtgaatgaaa agcaggaaag cactggaccc
      361 tgaagaatca gccttctcaa aactaattgc ttcaatgctt aaaaaggaca gctatgaaat
      421 accaagggca taacaaggaa atactgtata aaaaaaggaa ccatcaaaaa taaaacaagc
      481 ttttcaaata ggattgtact gtatttaagt cattaagctt tcattccaat tttgaagggt
      541 tgtatgttaa caaatcagct g
//
LOCUS       KCLA01002138             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34803upu ultra-conserved element locus uce-4361,
            sequence.
ACCESSION   KCLA01002138
VERSION     KCLA01002138.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-4361"
BASE COUNT          229 a          169 c          151 g          228 t
ORIGIN      
        1 attttgttaa tccagggggt tattactctg gtcccttatt aggatctata ctgctgccaa
       61 gcaatcctat aaccttctca aaagaagttt acctccgtgt tataaaacca gtagtggtat
      121 ttatactgtg caataattag tgtattactt gaatccacta acgggttcat tttatctccg
      181 cacaaaaccc ctagtctgct tatagaaagc ttgtgcctcc tttggtgctg ttaacgcggt
      241 gaaagagtga atgaaggctg gtagcactct ctcctttcgc cgtgccttaa ttcccatctc
      301 tttctgctct catccaatta gtgcagtgta ttaagcggtt tatcatctca tagtcagcta
      361 ttgagagaaa caaggcgaac actttgcaat agagcctgct ctcctttgac accctcaggt
      421 acttacatat tccactgtgc tatgaataat agaggaagaa tagagcgcta attccctcat
      481 caaagaatgc cttgtctgct gctttgctca acaacaccat tctgatcaaa agaaaagcaa
      541 taaagcttag cataacaaaa cgaaacctac ttattagctt agtggttaaa ttaatgcaga
      601 gccgctgcta ttcaaaaccg aggtttgaaa acagcctcca acaacctgat aatgctgcct
      661 tcgggatgga ggaattttaa tctgaaatct gaagctggca cagatgagtt aatctattaa
      721 actgctataa ggagggtgcg gcagaacgat tcaattaaag cgagctgaag gtgctct
//
LOCUS       KCLA01002139             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34818upu ultra-conserved element locus uce-1083,
            sequence.
ACCESSION   KCLA01002139
VERSION     KCLA01002139.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34818upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-1083"
BASE COUNT          216 a           81 c          108 g          242 t
ORIGIN      
        1 ttagtgttga caatatatta aatgaagaaa ttaaacgaaa caattctggg agggtatata
       61 taatgataag gaagtaaact agcagtggtt acattttcta tggtagacat aattgatatg
      121 tttgttgtct gtgattcaca cattatttta agtttctgag ggggattttt attgcaaaat
      181 attctgcatt ttaaatagta tttaattacg gtttgtttcc ttagggatta tatcaccatg
      241 tgattttaat ttggtatata ccctaagggg cagcatattt tcaattatga aatatttcct
      301 ccagaaacaa taatggttca atgatttatt gcaggatcct attataaggt gcctggtaca
      361 agtgaaatct gaaatgcaat tggcttaaca atatagtata ggcaggacta aaatgcatgt
      421 gaactgagca tatgggcctt tttcacaaaa atcatattta tatactttca tcctttgcat
      481 aatacttcaa ttattatatc ttgaaaaaag aacttggaaa gctgagagct atgaaacatt
      541 tacattatta tctcttcaaa aagttcattt ttggacaagt atcatttgga tagggattaa
      601 cttaatcaga gattttgaat cttctttact ttaattttta atctctt
//
LOCUS       KCLA01002140             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34834upu ultra-conserved element locus uce-4674,
            sequence.
ACCESSION   KCLA01002140
VERSION     KCLA01002140.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34834upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-4674"
BASE COUNT          268 a          228 c          178 g          284 t
ORIGIN      
        1 ctggccagtg tttgaaagaa ttagatgccc ttgtgtcctg atactgggtg ctggcttatc
       61 tggagaggtg ttttgccttc ttttcatcag ggcttgttga gtataatcca ggtttcaccc
      121 aggagaatgt tgttcaaacc ctgctgcctt cccctttcct ttcttttgcc aactcttgct
      181 gaatttcact tgttttggag gaaagtcaca ggcaggcatc tgggaggtgg tggttcaggc
      241 accatcaccc cctccgctcc accatgcacc attccactcg aggtctgatc atctcgcatt
      301 cacaacatgt cccgtaaagt ttgtgtcagg gggtttaaac tttagatttg tgtgaccaag
      361 gaattcccaa ttctgttgca tgtgttcccc tgtctctccc tctccccctt gtctttctct
      421 tggctgtgaa acagcacaag gagactcttt gtatgctcct aatcctgaag caacacagct
      481 ttagcaacat ccagggataa aagcaccatc aaaccacaac tttatggggg caaatctcct
      541 ctaatccctc gctttagcta aacaaagctt cttgccctaa tccgctattg ctttaaaaaa
      601 aaaaaaagct cagattttgt ttttagtaag aagatgatcc aaaggactaa ttttaagaga
      661 gactaaccaa ctctgacagc ttttaaaata gacgacaaga aaatagatgc aaacttccct
      721 ctcaattcaa gggttttcag gctctgcaat aagaaaaata tccagggttt aactgctttc
      781 ctttaagctc actcttattg tattaaacgc tctgaccaac tcagattcaa atcaccaggc
      841 ctaaatgcca tttgatcttt aaaaagagag tttaaaagtg tgcatattac tcccaggaag
      901 gcagcccagg gaaaatcaat tatcataaac aaggattata ttatacacac ggtcaata
//
LOCUS       KCLA01002141             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34864upu ultra-conserved element locus uce-3462,
            sequence.
ACCESSION   KCLA01002141
VERSION     KCLA01002141.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34864upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-3462"
BASE COUNT          220 a          155 c          113 g          239 t
ORIGIN      
        1 gctcagaggg cttttccagc ctcagtaact cagtgattct tagacgcaat gaaactacct
       61 ttgtaataat aaataccaca cgaccatatg catcaagcag aggatttcaa ttccgatgac
      121 acttgcttct caagaacaga cattctggaa gacgctgcca gccccaaatt gattgacatt
      181 tgtttactta actctctctt cttgaaagtc tgcacaccta tttcaacctt gaacagtttc
      241 caactgtggt atcctggaac attttttcat ttattaagtt cagtgttgcc aacccaaaca
      301 aagagtaatc agtgatgatc caagcagccc aagctgtcta gcaccacaca atgtatctgc
      361 atgctaattt tcaaattccc tcacatttcc agggaactaa tgggatcatt ttcattctgt
      421 tacagcaact caacagttac tgaatcacca tctgtgtttt cgttaacctg aatcagatat
      481 gaattctgtt attgcaaggt agagcagctt gtttaatgat tcttaatctt ttctttaatt
      541 aaatcatgca gccaacctga aaaatctatc ttaatgcaaa tgaggagctt ttttggcatt
      601 cgcttacagt aatgcactaa taaggttaat ttatgaaggt tctcttccag tctgtacaga
      661 tgatatttgt tcgctgcata tttttagcat attgtccctt tttaataaaa taatcattaa
      721 gaaaaca
//
LOCUS       KCLA01002142            1072 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34879upu ultra-conserved element locus uce-131,
            sequence.
ACCESSION   KCLA01002142
VERSION     KCLA01002142.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34879upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1072
                     /note="ultra-conserved element locus uce-131"
BASE COUNT          333 a          199 c          229 g          311 t
ORIGIN      
        1 tggagatttc ccatcacatt tcattttttg tgggggtgct ctgttctcca gggagctcag
       61 tcctgcagtc ctgactccaa acaatccctg acctggccct tacagcttgc ttggcatggg
      121 ctatgagcta tttctacagc tggctgcaat ctccattgaa taaacgaggc agataccctt
      181 tttaatgaat gaaacacatt cccttttatt atagcagccc aggcaaaaaa atgggggcgg
      241 agagagttct aataattcag gtatgattaa aaagaggata tttactggct tgcaggcctt
      301 ggggagaaaa aaccaacacg gcagcacggt ttctatatac atccccaggg aaaagttcaa
      361 gaaataagaa aatgcatata accattgttc gtgtgcatta tgcaagcttt aaaaaaatag
      421 ataaggctga gtttcagagt atcaggaaaa gtatttgggc tgcatttaag tgagaaggat
      481 tagcttgcat gatgttgatt tataaatggc aacaaccaat cccttatatt ctctcctgca
      541 gtcatctctc ctgcacagta attcccagtg ttcccttttg aaagcccttg atactcagtt
      601 agccccgagg tataatgttt gataatataa ctactgcttc tgtcactgcg ttttgtacaa
      661 acgcattata tgtggcccag aatggtaaag atttatgtat gggtatggaa aataaaaatc
      721 agcattgatt aaaagcccca gatagaccat ccaatcccgc ccagagaaca tcagttattt
      781 tgcattttga cgtggcgatt gataactcat aaatgcaagc aggaatgaca aatgcggatg
      841 gaaactggct ttgacaaaaa cgataacagt atcagtctcg aggggcgatg gaggtataag
      901 caggagctgt ttaaaatatt taatcatttt atgaaggctg caagatgttg tttgaccctg
      961 aaggagtgtg aatgtcacat ggatcagaaa ttgccaagtc tttgaagtga aataaaaaaa
     1021 atggtgttat tatagatcct tcttgacatc ctatcatttt tgtataggat ta
//
LOCUS       KCLA01002143             941 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34895upu ultra-conserved element locus uce-726,
            sequence.
ACCESSION   KCLA01002143
VERSION     KCLA01002143.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34895upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>941
                     /note="ultra-conserved element locus uce-726"
BASE COUNT          285 a          229 c          186 g          241 t
ORIGIN      
        1 actgataagg aaacactgta caattactcc ccaaaattaa catttgacac tttgcctaga
       61 ataaattagc aaaacacttt tgaaatatca gtggttttgc agagatacca ggaaaaagca
      121 gcgtaaatca atactgatga gtttgccctt gacatactga ccatgtcatc gggctcttgt
      181 catgtgatat catgtcattt ccccacctgg ctcatgacct tgtcctttaa atgacccaaa
      241 gcttccctca agtagcagga ggcccctccc cgctgtctca gcaaggtcga acgggtcagc
      301 gtgtcctcat ctataatcca ccaccatttg tcagcaggga ggctggagga ggcaggcttg
      361 ctacaagggg agaatgccca attaggcagc tgtcacacaa agcataggct gcaaaattat
      421 cccctgtcaa aagaaagagc agctgcgggt gccaattaca gcaacctttc aaccctttag
      481 gtactggaaa ctacacagaa gtaaatgaag tacaattagt gataacaaat agatgaatta
      541 ggacagtaaa ttagaaatta gtagcaggtg agcttaggtc tcccgtaatt ttaagggcac
      601 agcatacccc aggcaaagac acgaacatac aggtttcaca gagcacatca gttttgtcct
      661 attcatcttt cttgcatgga gtcagttttc ctccatggtt ttcttctcac aagccctgtc
      721 tgaggaaaaa aaaaaaaggt atcccaaatt ggtaagaagt tgcagcgtct tgatttttcc
      781 cctcttcctg gcaaatgcag cttcctcctt tctcacaagg aggtcctcag agccagcaaa
      841 gtctctctcc agtaagcaca ctccgtttca gcctgacatt tgacatttgc tgtgcttcat
      901 gttccagctg aacaagattt accccagaaa caaacaaatc a
//
LOCUS       KCLA01002144             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34909upu ultra-conserved element locus uce-4442,
            sequence.
ACCESSION   KCLA01002144
VERSION     KCLA01002144.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34909upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-4442"
BASE COUNT          197 a          107 c          115 g          125 t
ORIGIN      
        1 aaagggaaaa aaagaagaaa aaaacactta gcaaaccaca aatttcagag acctagtcac
       61 atctgtgttt tatcagcttt ttccggatag tattacacca aacaattgtc tgcagatcgg
      121 tagacagctg agactttaaa gtgctgaatt actgagaaaa tgctagagat aaaaaacagc
      181 acatgtatcc tatcaatgta atgaaaccaa cctgctgcta gcgccatagt gccttagttc
      241 taagtaccct gtagaggaac ggaaggcttt catttaactc ttaagaggga agcaaggcaa
      301 agaagagtaa aggtcatcta ataccagcct taatcacaga actgaaatac tctcagatat
      361 atgaagggag gaatgcttgg tgttcaaaat aaaaccccaa ctgcagacaa cagtgtgtct
      421 gatcatactg ggggtagcat ttcctgctgg aaattcccaa gacttaggct gatttccaat
      481 ggagttacag acatggagca tggcaaaagc tgagactaaa gaacaggcac tgccacatac
      541 aggc
//
LOCUS       KCLA01002145             217 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34925upu ultra-conserved element locus uce-2728,
            sequence.
ACCESSION   KCLA01002145
VERSION     KCLA01002145.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 217)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 217)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34925upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>217
                     /note="ultra-conserved element locus uce-2728"
BASE COUNT           33 a           51 c           72 g           61 t
ORIGIN      
        1 tgggcgtgcg ggtgcgggtg gtgcgggtgg tagctggcgg agctgccggc gctgccgctg
       61 tgctgcgtgt actcctcgca gggagggaat ttgggctcga tgtagttgga gtttatcaaa
      121 aacgaactca tggtcattaa tttgtgaagt gcaaaaatac taatttttct cgcgttgtcg
      181 tttttctggg ctcggcgagg cccctcctct tcccccc
//
LOCUS       KCLA01002146             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34941upu ultra-conserved element locus uce-4853,
            sequence.
ACCESSION   KCLA01002146
VERSION     KCLA01002146.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-4853"
BASE COUNT          224 a          169 c          175 g          233 t
ORIGIN      
        1 aagtgcccca caattgtcag ttagtgacag ctcagggagg ccagggctat gtaaacatgg
       61 aggatgcttt atagaagagc acagtttgga gcaaaatggg gctttcttta tggaacaccc
      121 ttatccttaa aatctcgagt aagctcctct cgttgataaa agtccaaacc ctcctattct
      181 tgaagggaag attgggaggg gaagcagtca ctctcctttg atggtttgaa aaaagaaaag
      241 atgtttgtac cactcactga ctggctaatg aataatcaga tttcacagct tgagtgctgg
      301 ggtggtaatt tggttgcacg ccatgctcca aatccatgga atagtgcttc attaatgtga
      361 agacctgtat aatcaaacaa ttagcagtct ctctgctgct aaagcagctt ttcatcagca
      421 tatatacttg gttgtaagat gagtctcaaa ttactggatc tgacagcaac tagtctttta
      481 ctaaatcaca gcagtagtag agtagggtgg acagagcatt cattttttaa cccatttcta
      541 catctgcaag aggttcattc tttccatgac acatgccccg aatcaccacc gtgggcaagc
      601 tgaagatgtt gtgggtgaac tggcatttca tttacatgag gaaatcactg ttttaaccgg
      661 actgttcaaa tgctagaaat tagcagagaa gtgttgctgc ttattaattc acctccttct
      721 cacttcactt ctcttcctgg aaggaggcag agacctctgc ctgtattcca gtaccagaat
      781 gtcacccctt ccttgtatgg g
//
LOCUS       KCLA01002147            1082 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34956upu ultra-conserved element locus uce-3535,
            sequence.
ACCESSION   KCLA01002147
VERSION     KCLA01002147.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1082)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1082
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1082
                     /note="ultra-conserved element locus uce-3535"
BASE COUNT          350 a          228 c          256 g          248 t
ORIGIN      
        1 ttcatataca gcgggttcaa agcccattca gaactgattg tgatttattc tggaagactc
       61 ctctaaaatc aaacggggtc gtagggtaag aagcctaaca gcagatttaa accttctgtc
      121 ataaaccccc gtgatttagc agcctggctg gcctcgcctg gcccatctct ccagagggac
      181 gggatggtac cttctatctt tttcaaactg acacgaccca tggaagtgac agggaggaga
      241 aagggctgtt atttgtcccc cagctggtga cagcaattct gttggtgaac tccactgcca
      301 accaatctgg aaaagcacga taatgcctga ctcactgcgc cccacagaaa aaggcaggca
      361 ggggaacatg cactctcctt gtcagaaatt ctatcttgtt ctaattttac aaggaattaa
      421 agcattcgga agggtggagg ttagagaaca gaaaagaacc ggggttgttt tgcacagcat
      481 accattcaca gctagcgtga aagaccttcc gtttcaagcc tttgcccttt accttgatgt
      541 ggccaatgct ttctagtgga ggttttggaa ggagaagaaa tatcacagca tttctttctt
      601 tgttgagaat gaagaagtga tgaggaagga gtggaaagaa gtgaggaagg gggaggagaa
      661 aagataaaag ataacaggtg tgagacatga gacacgaacc gcagagattg aagggcatta
      721 acagatgagc acagaaaacg ggatttcgaa tttcattatg caattgctgc tcatgctaca
      781 ggttaaagag agtgatgagt tagtcatgtg caatgaagca acagctctga aatccggcat
      841 catacttacc aactaagcat tacaagagaa aaaaaaagag agagagaaag aaaagaattc
      901 tataacatta accagatcca gcaaccttat tcacagcaat tgagagacat cctaaacatt
      961 gtctgaagca ctctgtctgc caaaacactg accactcgca cacacacaca cgatcgagaa
     1021 ggagaaacaa atggcagctc gatatacggc ttctgctccc cagctgcttc acagtattaa
     1081 gg
//
LOCUS       KCLA01002148             987 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34972upu ultra-conserved element locus uce-4912,
            sequence.
ACCESSION   KCLA01002148
VERSION     KCLA01002148.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34972upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>987
                     /note="ultra-conserved element locus uce-4912"
BASE COUNT          317 a          182 c          212 g          276 t
ORIGIN      
        1 ttccatctga cctaaaggga tgtttataaa gcaagatgaa cctaggaaac agcaactttg
       61 gaggttgcta cagaaaacta cagatcaata cacaaggaaa aatagatggt atggaatatt
      121 ctagcttttg tttaaaaatg tcttaaaaag acattgatgt tgtggcatgt ttggtggact
      181 gaacgcctat gttatagaaa agcctctgaa gcactccctt cctctgtcca ttacagactt
      241 tatagtttag ctcgatcatt tttcactgga ctgtgagaag cgattcctga tcgttttcct
      301 tttttctatc tgcagcaatc ataaaaacaa caaatcaatg acattttatc aagcatgaaa
      361 tggtgctgta accaaacagg gggtttgctg aaataatgtc tcagcaagga aggaaatacc
      421 attgacttta ttacagctgc ctaatgtttt ccacgaactg cagaaaataa ttcattgtat
      481 cttagtgacc tacaataaca gctgactgct tgcacttgat ggaaatgtga tttgtgccta
      541 ctaaaaatta actatttaac ttctccatgg ttttctctct ggtagcacat tgcattctgt
      601 tttgaactgc ttcctgagat gtgaacactg gtaaacacaa acaccagttc tacgaggtgt
      661 ttttccagga gagacgaaag acaacgacag agcacatgtt tccgtgagct gtaaaagcca
      721 ctctgaaaga ctgcacttag acgagatccg ttcttttgaa tagtcatttt atctctgtgg
      781 ttcaatgaag ttacaaatat aagggagtaa ttcagacagc agcgcatgtg cagacacgca
      841 tacacacaca gctgaaagtc ctgaggtgag aacgttcggg atgcaaaacc agtacaggtt
      901 caggactgga ctggagaaag tgacatggga aaagtggcaa tctgtctaag tagtgtggag
      961 gaaaacgagt ggggataaga caagaag
//
LOCUS       KCLA01002149            1190 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 34988upu ultra-conserved element locus uce-1309,
            sequence.
ACCESSION   KCLA01002149
VERSION     KCLA01002149.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1190)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="34988upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1190
                     /note="ultra-conserved element locus uce-1309"
BASE COUNT          349 a          299 c          246 g          296 t
ORIGIN      
        1 ggaattagag gccaacaaac ctgaaaaaca cttgaaaaaa gaggaaaaaa tctcatctgc
       61 tctttcagtg ttgggcaaag ttgtagggga agcgcatgtg gaccctactc agttgcaggc
      121 acttcaaaat gcaattgctg gtgacccagc ttcatttata ggtgggcagt tcttgccgta
      181 ctttattcct gggtttgctt cgtattttac acctcagctt cctggaacag tgcaaggagg
      241 gtacctcccc ccagtctgtg gtgtggagag ccttttcccc tatgggccgg cagtgcctca
      301 gacaattgct ggcctgtcac ctggcacact gttgcaacag taccaacagt atcagcagaa
      361 cctccaggat tcattacaaa agcaacagaa acagcagcaa gaacagcagc agaaacaagt
      421 tcaagcaaag tcggctaaag cagagaatga ccaacagcaa aactccagcg acacttcgga
      481 aacgaaagaa gacagaagtt ctgcttcaga aagcacaaaa gaagaacccc agttagattc
      541 caaaagtgca gacttttcag acacttacat tgttccattc atcaagtatg agtttatatg
      601 cagaaagtgc cagatgatgt ttactgatga agatgcagca gtaaatcatc aaaagtcctt
      661 ctgttacttc ggtcagcctt tgattgaccc acaagagaca gtgcttcgtg tcccagtcag
      721 caaatatcag tgtcttgcct gtgatgtggc tatcagtgga aatgaagcac taagccaaca
      781 cctccagtca agcttgcaca aagagaaaac aatcaaacaa gcaatgagaa atgccaaaga
      841 gcatgttaga ttattacctc actcagtctg ctcccctaat cctaacacca catctacctc
      901 gcagtctgca gcttcttcta ataacaccta tcctcatctt tcttgcttct ccatgaagtc
      961 ctggcctaat attcttttcc aagcgtctgc caggaaagct gcttcttccc cttctcctcc
     1021 ttccctttcc ttgccttcaa cggttacctc aagtttgtgc agcacctcag gggttcaaac
     1081 ctcactaccc acagaaagtt gttcagatga gtctgacagt gagttgagcc agaagctgga
     1141 agacttagat aattctttgg aagtgaaggc taagcctgct tctggcctag
//
LOCUS       KCLA01002150             726 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35003upu ultra-conserved element locus uce-2666,
            sequence.
ACCESSION   KCLA01002150
VERSION     KCLA01002150.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 726)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..726
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35003upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>726
                     /note="ultra-conserved element locus uce-2666"
BASE COUNT          196 a          139 c          186 g          205 t
ORIGIN      
        1 ggatggcatt tctgctccag gaggaacaat gggaaggagc catggctgta gggaaccacg
       61 tggataggag gatcatcaga catggtattg tccagcagct tcatgcccaa ggctggcatg
      121 gcagctaatt catttcacag tcacctggga accagataga gtgcagggga tggagataaa
      181 gtacattcgc ttactcagtg gtcaaagtgc tggttggaaa tgccttttct gacagtattt
      241 tcatcatatt ttgagcttcc tagatgaagt gacattgctt atctcctcga aggcaaaagc
      301 cttaaacctg tttcttcttt gctcttcagg agaaaagctg cccttacatt cctccgaaga
      361 agctcaaaat ctgatgggcc aatcatcagg taaaatgtga agctagaggg aaataaatag
      421 gcttctgttt aaatatattt cttaactagg actgtgccaa tgttgtgctc ctagaaaact
      481 tgtggtgttt gtggaggagg ccaggtttcc ttggtgggca gggagagacg ggcagcaccg
      541 tgcctgccat tctctatatg gcatgtcaaa gaaaagtgcc tggagatcat tgccaaggtt
      601 tctgatgttt gcatgtaact gtcatctgtg tcaaaaaaag gcatctgagt cattgccctt
      661 attctttcat ttaatgttgc ataaactttg ctcagaaatg gtagagaagt gcttgtggga
      721 gcagaa
//
LOCUS       KCLA01002151             260 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35017upu ultra-conserved element locus uce-5693,
            sequence.
ACCESSION   KCLA01002151
VERSION     KCLA01002151.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 260)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 260)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..260
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35017upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>260
                     /note="ultra-conserved element locus uce-5693"
BASE COUNT           88 a           45 c           58 g           69 t
ORIGIN      
        1 caaggctttt ctttctattt agtaatttat caagggaagt ggcacattaa taaacagatc
       61 tcccttgagg tgtgggagta acagagataa atatgactgt caaatctggc ctgcttcctt
      121 ctgttagaga aggaggagac tctgagaatg caaatgtgga aaactgtatc tggaaagaca
      181 catactattt gtaggacaga aacacagctc agctgagatg gagccatggt acaatacata
      241 cagaataaaa tacttgccct
//
LOCUS       KCLA01002152             625 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35033upu ultra-conserved element locus uce-5671,
            sequence.
ACCESSION   KCLA01002152
VERSION     KCLA01002152.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 625)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..625
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>625
                     /note="ultra-conserved element locus uce-5671"
BASE COUNT          197 a          101 c          114 g          213 t
ORIGIN      
        1 agtttctgaa atccttacag cgttccagat tttttcattt aattttccat ttctcatttt
       61 acttgatgct ggtcagaatc agaaaatgta ctcttttcat ttgtagttaa ttcgattctt
      121 tctagccatt ttgccaatgg agttatagat gagaccatac agtgtgcatg ctggaactat
      181 gtgaagtgca ggtaccaaga tgttatctga tgacactgtg tcaggaagag ttaaatcttt
      241 ttgacaattc aatggttccc tttgggtttt cacaaatggc acctgttgtt gaagtcaata
      301 gagcttacaa tttaatttaa tctgcctgca aacaatctct ctcattaggg ggtgaaatga
      361 tgatagaatt cactgaggca tgcagtttca ctttctagag ggcaatacat aagtacagtc
      421 atcattttca gtgaagggaa gcacaattat cttgaagctg attgtaaaga agaaagcaaa
      481 aagaatatct gggagaaaca tcataaaaag tcagtctcac tacattttct gctgatgcca
      541 atttgcaatc taattattat ttttaataca atttgaaaat gtagtagtca gaagaaaagg
      601 actagtaata tacttttcca tctat
//
LOCUS       KCLA01002153             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35047upu ultra-conserved element locus uce-4402,
            sequence.
ACCESSION   KCLA01002153
VERSION     KCLA01002153.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-4402"
BASE COUNT          156 a           84 c           79 g          125 t
ORIGIN      
        1 tcccttacag aaatatcacc ggtaggagtt tatctgtttt gttgagcgta atacaaagtt
       61 caccttttca gagcgtgcca cgtgaagcct cgcttgcctt tgctacagta aagtcatttt
      121 atggtattgt gtcacaatga aggacaaaga taagccaact gtttagattc ctctccttta
      181 tgttgtggct ttgatcacta acaatgctgc gtgaacagcc aacagaaggc tgacatttca
      241 taaaatatgc agtgataaaa actaatactg tagcatctgg gagcgataca taaaatgcag
      301 aaatacacct aataactgtg atcttaaatt acaagttact aaaagctaaa gaagaagcat
      361 acctaaaaga aaggaaaaga ttccgacagg atttttctcc ttcgactcct aaaaagacat
      421 tttgaaaaaa taatccaaga tatc
//
LOCUS       KCLA01002154             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35063upu ultra-conserved element locus uce-7907,
            sequence.
ACCESSION   KCLA01002154
VERSION     KCLA01002154.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-7907"
BASE COUNT          139 a          120 c          135 g          179 t
ORIGIN      
        1 ttcttccctt ttttttttat gcagtcttag cataaaatgg tcaaatgatg ttccaccgca
       61 gaattcaatt tcacagttca gttgggtcct tgattacact gccaaattca gattaatgtg
      121 catttaacta acatggatca gggcctcctg gccagcggcc agcagtaata gtagcagccg
      181 taagccgtat agagtttgcc gctctgtcca cctccgtgcg ctgacaccag aattgatcgg
      241 ttaaatgtac tcgttgccat aattatttgt aattgtgcta catcgtgagt ctgtgttgag
      301 ctaccccttc ggcctgagat gcagacgtca tcaggagtca catatgttat attgcaggcg
      361 tggagatcat gggtgaggtt ctttgtcgtg catcctgggt tttttgaata gaagcaaagt
      421 tctatgtttg caaatgcgag gtgttcattt gcttttcatg gaagcttggg gactaaaaca
      481 gaagaaaggg ccctgcaaat gatccaggcc tcccatcggg ataatttcct ctgcgattgc
      541 ctcagatttc agattagaat tagcggtttt gga
//
LOCUS       KCLA01002155             941 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35077upu ultra-conserved element locus uce-1863,
            sequence.
ACCESSION   KCLA01002155
VERSION     KCLA01002155.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35077upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>941
                     /note="ultra-conserved element locus uce-1863"
BASE COUNT          309 a          187 c          177 g          268 t
ORIGIN      
        1 tgtatgtgac atattcttgc aaagtaatgg tgaggctcaa taaatgtctg tgtttgtatt
       61 acaaataaat ggcacttttg gaaaataaaa acacacacag caaaaggaaa aaagcttctg
      121 tgagagattg tatttttaat aaatgaaatg ggaattaggt ttccagtttc catacttctc
      181 ctacgaaaat ccagccagtg tttatttaaa tagctgtaat tgaccattct ctggaaatgt
      241 taagtcatgg ttatatcaca ctatttctgt ttctgtgcaa aaggttcagg gcttttatac
      301 cagaaatgga acacaacact accttcgggg attttaataa atgtagggaa ccgtgctagc
      361 aaaggagttg ctgtccaaat agactgacat acacaggcca atgtagcctc taatgacaga
      421 gtaagataat gacaggcccc actcaaaatc agcaggaaga ggaagatcaa tcttggcaga
      481 gtgaaggaaa aatgctggct ttcttcatgt tagctcatct catacatatc tatcttcagc
      541 tgctgcccag tactgtggtg ctctgcatta actacacagt ggatcaataa caattacacc
      601 ttctcaaaaa catgacacat agcaggattg ggttgacatt tcacttaggc caacattgat
      661 ctcagtgcat ctgattccag tcctaaattc aagtcaggcc tgggtctagc tggaataaac
      721 acacagttaa aaacaaaaaa ggaaaccagc tgcttgtgcc ttggctcaga agtaaacagc
      781 acatccatct gtgcagcccc catctccaat ctactattct tcctgttgct actagtgatt
      841 tgtaagttga tcaaagacta ttttttatat gaattactca ccgtgacatc aatgttgata
      901 atatctccat cctgaagagg tcgactgaaa cataaacaga a
//
LOCUS       KCLA01002156            1037 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35093upu ultra-conserved element locus uce-7511,
            sequence.
ACCESSION   KCLA01002156
VERSION     KCLA01002156.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35093upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1037
                     /note="ultra-conserved element locus uce-7511"
BASE COUNT          348 a          233 c          204 g          252 t
ORIGIN      
        1 aagaaaactc acagaagggt tctgcagacc ccagagcatg actttttctg cactgctgca
       61 gagctaccag ctcactagaa gagcagcaag ttaaattagc ccaaactaca aagcattttc
      121 agaattagag gtgcctgatg aagagttcac tctttgagat ggtgctggct cgagatgaaa
      181 acacaaagga agctgaagac tcatgataag agggcaagca cagctccagc acacacacac
      241 agaaagcact gaagcagcaa cagtagcctt gtcatctgca caaatttttc tggcatcaaa
      301 aggtaataca agaataaacc agaaacactc cagatggcaa aaaagctgct tctatcttgc
      361 aaatcagaca taaatccact ccttatatca aactaacctc acattcaggg caaaaccaat
      421 ccccctctgg ttcggctgtc agtttcagac actttgcatg ataaacccga ggacagagtt
      481 cgcagcagag gacttggcct tcccgatgac aaacccagca atagaaatca ttccgtccat
      541 cctgtggtac aacatcaaca gggtctgtgg tgagtggctg cttcatatag taaaacggac
      601 catgtcttag ttctgactga aatgtaggca agaaaaacag gtttggtttc aaaacaaatt
      661 tgcatttttt ttccaaatag cattcatcac atataagcaa acatcagttc acagagttga
      721 ttaacagtta tgcaagcaca gtatcttatt catcgcgcag aatcattcac aaagaagttt
      781 gcttcttatt catatgtcaa atgccaattt gcactcaaga ctgagaataa atttttgcag
      841 taagtgcagg catcaagttc aggacatgca atccagcaca ggtgagtaaa cacttgaatc
      901 tttaagaagt ttcctataga agctatgagg tcctctaaac tcaaatttct acggagctgt
      961 gcaagctgaa tgctgagctt tctagtagtg gctaaaccca ggagaggtta gtcctgaaac
     1021 cactgaacac catgcaa
//
LOCUS       KCLA01002157             508 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35108upu ultra-conserved element locus uce-242,
            sequence.
ACCESSION   KCLA01002157
VERSION     KCLA01002157.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 508)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..508
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>508
                     /note="ultra-conserved element locus uce-242"
BASE COUNT          162 a           81 c           87 g          178 t
ORIGIN      
        1 gagagagaga gaaagacaac ttatttaaat cctgaataca gtcagacctc atatgcattg
       61 ttaaaaaaaa gccctaaaga attgcatatg gattaggggg atgaatattc tattatttca
      121 gtctgttctg ctgatcttct tattgtgact ttgcgcttca gaaatctgcc aggaatttgg
      181 ctttgctgta ctaggcagta attttaaatg tgtatcaagc acttgatagt gtatgatttg
      241 cgtgctgttg cattcccatt ccctaaattt tccaccaatt tattactttt ttcatactgt
      301 tttaatattt caggatgatg aatatataca gcatcattaa aggtaaataa aaaatgcatg
      361 aaattaaaaa atggaatatt agatgtttct ttgctgtaat ccctaggtcc aataggaatg
      421 aaatgtctct gttctgtcaa gtaatcccta aacatgatta gggaccttgt agtttccaca
      481 tagccctcat aatatttgta tcatataa
//
LOCUS       KCLA01002158            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35123upu ultra-conserved element locus uce-6438,
            sequence.
ACCESSION   KCLA01002158
VERSION     KCLA01002158.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35123upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-6438"
BASE COUNT          224 a          222 c          262 g          295 t
ORIGIN      
        1 aataaatgtg ggattctcat atccaggact cttccaaacc cctttgaagt tggcgttgga
       61 tcagactcag gcttgttgcc tcttccaggg gacctgctgg ctgtgggctg gactcccctt
      121 ctacttctgt tgtaggaagg gcattcattg caaaacaggt tggctgaaga tgagaagtct
      181 cgagtttagc tttagaccca ttgttgcttc tgccatgtgc aggacaacct gaatttaagg
      241 aatgaaagct tccagccttc aatccagggc catttatctt cctaccagtg tcacaacctt
      301 tacatcatcc gatcaaacaa ttttatttgc ccaaaggctg cctggagagg ttggcaaggg
      361 cagttgctta agtctgcaca aggtcagtcg ggttgtctaa taattgtcct aacactttac
      421 ctgttatgga acaataatga gagttttttc attattttcg ggtgagtgaa cctggcagat
      481 gctgacagcc agcagatgtg taaagttcga ggtgatttgt aagggaccgg ctcatctgac
      541 gcacggtaat tgcattgtgg gacactgtca ctcagcggca tggcccgctc cggcagaacg
      601 aggtaaaggt cagttcaaag agctgccgta gcgtgagggg cagatcgggg ctgaaattaa
      661 aaacctcatt tccatctctc ccctatctgt gtgctcacgg catgccatgg ttctagattt
      721 agggttgtct gagtgatcaa gcggcttaaa tctctcctct agtaaatctc ctacctgttg
      781 atgccagctt ggtgctcatc tgtctgcttc tgattttggg attggatgtt tcttctgtca
      841 gttgttcctt ggcttcagcg ctctcccctt acaccctgcg tgcaggagag tttgagttgc
      901 cccattgctc atgggcatta ggattgggtt gagcagtcct gttggaaaca gagtggattt
      961 gtgtgatggt gaacgtattg gtggctcaaa atggggagcg aga
//
LOCUS       KCLA01002159            1019 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35137upu ultra-conserved element locus uce-5476,
            sequence.
ACCESSION   KCLA01002159
VERSION     KCLA01002159.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35137upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1019
                     /note="ultra-conserved element locus uce-5476"
BASE COUNT          374 a          184 c          201 g          260 t
ORIGIN      
        1 agtgtattac aagataccat acacttcagg catggaagct aaggtgtttc atggtcacgg
       61 ttgttcacac actgtctaat tcacaaagca ttggtgtaga aatgtaaatg gtaaacagaa
      121 gtaaaaattg gttctccctt tccctccctc cgttgtcaca agtattactg cttaccagta
      181 cattgaaaca gcaggagatt tctagttttc acttttacga tagcaaacat tggcacagca
      241 ctaacttcta acagttccag aatgaattgc aaaatagcat ggtattttac acgactccaa
      301 atattcattc ttaatcttcc cctctccccc cccatccccc aagtagtttt actttgaaaa
      361 atttaatgat ttagcagaat ttgaaagcag aaggattaaa aaagtgataa agggggtgca
      421 gaaattagca gaggtggcac tacctgaaag ctcatcagaa aggggagtga gaacaatatc
      481 aggcaagaag ggtttggaag tatggatcag aacaggagca cttttagcac tgcgtatata
      541 ggccgatggc agagcacatt caccaatgga tcggcttctc atggcttcaa aaaggaaaag
      601 aaagaagtgg ggaaggaaaa aagaagagtg actataatga aaggcttgtg tcacagaaaa
      661 agcagcaaca gagaaaacaa agataaaaag gaagaaaatt caaaaattaa aacatttcag
      721 cacggcagat attggcagag ctgtaagaaa gaaaaaaaat cagtggacac gtaagacatc
      781 ttgagttttc aacttttatg taaagcagca acaatgcctt tattatgacg attacagaga
      841 ttttgcattc aaaatcaaga aactaattaa cacattgcat caggggttga aaaatcaaag
      901 ttaaagtcac tgcacaagca ctcagaactt gaaaattttg aacagaaaaa gcaacttaca
      961 ctacatttgc attttcctag ttgcctttgg tttactcctg aaaaagcatc tctgagttt
//
LOCUS       KCLA01002160             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35153upu ultra-conserved element locus uce-1231,
            sequence.
ACCESSION   KCLA01002160
VERSION     KCLA01002160.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35153upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-1231"
BASE COUNT           63 a           70 c           93 g           74 t
ORIGIN      
        1 aactgcggtt aaagcagaaa gcgaaagagg taggactttg cagttccccg ctcgcctttg
       61 tgtgcggaga gaagcttggc agccccgtcc tggcaattag gtcagggttt attttgctgc
      121 cgcataccat ttgcgggggc cttggggaag gacaggaact gccccaggca agggcagtgc
      181 ctcaaatgag gtcaatgaat tatgagtttt tccccctctt attttcatcg tttcagtgcc
      241 gtctagaaac ggccctttgt aggcggcagc agcgcgccgg gtagggatgt catgtgggat
//
LOCUS       KCLA01002161             927 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35169upu ultra-conserved element locus uce-3323,
            sequence.
ACCESSION   KCLA01002161
VERSION     KCLA01002161.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 927)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..927
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35169upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>927
                     /note="ultra-conserved element locus uce-3323"
BASE COUNT          265 a          204 c          176 g          282 t
ORIGIN      
        1 actaaatgag aaaagtctct cctatttctg tacggcgaga ggtaactgat gggtctgctg
       61 cggccgggcc agtaaaagaa agggaagtgt aagattgaca ggatggggag aggcattctt
      121 taaactcacc ctttctgact accataatcc acgctatctg ggaaatactt gaatctctct
      181 aagctgtagt cctgaagcat ttacctccca gacacttttc taaatgtaat tctttttctc
      241 agtgtctttc tctcctctcg gtaaaacggc ttttggattt atttctcatg catctctatc
      301 gcgcgtttgc ctctgaaaag ccaccactgg gtaactgaga cctgctatac caaactactg
      361 ctactggagg gatttccttg aacttgaaga aaggcacatc aaaaaccacc agtgttactg
      421 ccatgtcaat tttgatgcta ataatgtgca gattatgacg aaaattgcca atcatgttct
      481 ctgatggacc tcctttgaat gtggaattgg aaaaaagttc cccgcacaga gacctgctgt
      541 caagtactaa caacccgcta agggaagtca ttaaaagaga cagataagag acttggtaca
      601 taaaacattg ttcttggtgc atagaatgtg tgttatttaa tgttatctct gttacctgaa
      661 gtgatttcgc acaagaaagc cactttctta tcatctcaat tgccaatttt cattttggta
      721 acttggacac cccgggtaga cttttctctg ttaagttgat attccaccaa tgtgaagagc
      781 ctcattaaat caaacccaga tatttccata atgctcccta cagagccact tcactcttca
      841 cataatgaga tttttctgaa gagttgaatc cctcatctaa cttactattg cttgtttagg
      901 ccctgtgtga atgtgaatac acacaca
//
LOCUS       KCLA01002162             907 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35185upu ultra-conserved element locus uce-2396,
            sequence.
ACCESSION   KCLA01002162
VERSION     KCLA01002162.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35185upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>907
                     /note="ultra-conserved element locus uce-2396"
BASE COUNT          278 a          173 c          147 g          309 t
ORIGIN      
        1 gaagagctcc cacaaatatg tttttgagtc cttgaatttg ggtcgctggc cagaaagttg
       61 catctattag cctaatatat atcacttctt cctaactaca cttagctttt ttttctccag
      121 agtgaaattc atccggtgtt ttgtgtttgc tataaataca catctcagct gtatttctat
      181 cctttgtgtc aacattaaaa ttcccttgtt ctatgtttag cttgaataat taccaagcca
      241 tttgcaatta gaactctagg atatgacctc atactgattt attccttcgt ttcgttctgt
      301 atttaataca tttcagatac tgaaaatacc aaatctttgt ccttttattt tgatgtttat
      361 cactaatgga aacattccaa aacaatcagc caaataccta tgctttgttc atttattgcc
      421 ttctctgaag ataaattgac tgtactcaac tctcttcagc atttttcttc acctagatat
      481 tattgccttg tgcagccacc ccaaggtgac tgttatcact taattaaatc cttgcacgct
      541 gggaagaaaa aacaacattg ttcgttcata accccaagga ggtggttttt tttccttaag
      601 ccactaagct ttttccctgt tttattaact tattcctggc tacaacaaga catactttgt
      661 tgatgagcga aaggttgtat tagcttttta ttttctgggt aaacttatct ttttttctgg
      721 aaaaaaaggt cgatgttaca acaaagggga aaaaagggat ctctccaaac cctgcaattc
      781 tagtaaaggt ctgtgtaaac atcaggctag taaagagaaa caggggagta gcaggaagga
      841 aacgagaaaa taaaatgcaa acataaaatt ggaacaagac aaaaaaagtc agatgacgtg
      901 tatatac
//
LOCUS       KCLA01002163             984 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35200upu ultra-conserved element locus uce-3193,
            sequence.
ACCESSION   KCLA01002163
VERSION     KCLA01002163.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35200upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>984
                     /note="ultra-conserved element locus uce-3193"
BASE COUNT          314 a          194 c          154 g          322 t
ORIGIN      
        1 ggagcacaag aaggaaaaat aagagaattg tacctcaaac aattttatga tttaccattt
       61 tctttactat gccttcttac tttgcttaga taacataagc agatcacatc tacagcatta
      121 aatgggcatt gaatggtgct tgaacattag ctcctacctt tctgcagggc acaaactgtc
      181 ctttcttatt tgtgcagcat ataaacaacg cctagaataa taagacgtgg atcctgactg
      241 gggtctcaac caactgtgta aacattagta cttttaatat tataatagga gggcattatg
      301 gttaatactg ggtcatgcca agatatccca cggggataca tcaaagatga atgtgcacag
      361 gtgaattgtc tgagcttctc tagaatttaa agaggaaagg tttcagctca cttcttgtct
      421 ctcatgatat gaaagtacag ggctaccccc aatcatgtat ttaattcaga aacatacaat
      481 actatgaaat gaaccatcag gccatccatg aatttgtttt aacaatccaa caacatcccc
      541 atttctcatt catccactta gcttaattct cctaccatca ctttcattgc tgaggttgtc
      601 tctattaagc cattttttgt gcatcattaa cttttaacca agcatcgata gctttattgt
      661 ttaaattgca tatgacttta tttaacgtca gcatttcttt tggctcctga catgaagtca
      721 cattttataa ctaattaaat tgatccctag gaagcaaaag ccactaaaca gaattattcg
      781 tactcaagtg tcaatatatt aaatcaaagg gctaatgagt tgggtcactg cttcttttat
      841 ctgaaagcta ctgcagaata gaattcatac cagtgtctac tttgtgcttt gcaatcaata
      901 ttatttaaag caaaggtaac taattaatac attttgatgt acctgtgaat aatatattca
      961 agcccatttt taccacttgc acac
//
LOCUS       KCLA01002164            1180 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35216upu ultra-conserved element locus uce-4207,
            sequence.
ACCESSION   KCLA01002164
VERSION     KCLA01002164.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1180)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1180)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1180
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35216upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1180
                     /note="ultra-conserved element locus uce-4207"
BASE COUNT          311 a          255 c          307 g          307 t
ORIGIN      
        1 aacatgttaa tagaccatgt cttggctttg gtgttggtta agcaccaagg atgatggtta
       61 aagttagctg tttgtaatgc tgcccagaga ctttaagtgg ttcctcaccg gtgggtgctg
      121 gtgacactaa tgaacaacca caccagctgc tggacccttg aacagctgct gagctgtgtg
      181 cagtgcagga ctatgtggat tgctaccatc aataactcat taatattgca ggtattccct
      241 gttgagtgct tctggaaatt gtgctgaaat gggagcaccc aagtttactt tctcagacct
      301 gtcgtatgct gcctcatctt aaactgccaa acatcagtat cttctgcgga tcttacactg
      361 ttacacaact ctataaaagt ttagagaaga atgtgctgct gtgtagattt gagactctaa
      421 gcacgttatg aataatactg tctttatttc tacagtggga gccaagaaga aaggtttgct
      481 cccgggtgga acagggaata tcctccttcc cttgatagtc ttgctcaaga aagacactct
      541 ggcaacttct ctggcagaga atcacttcct tttgatatcc aggcattcac aggcctcctc
      601 aatcctcagt ttgccaacag agaggaacct tctttcagct ttggagctag agatggacca
      661 cgtagtgact tcagaggtgg ggaggggcac catgatttca ggggtagaga tttcccacca
      721 tccgacttcc agggcagaga cgaatctcag atggatttca gaggcaggga accaccctct
      781 tctgactata gggccaggga tatgtactcg ggagactttc gggacagaga agggccgcct
      841 atggacttca gaggtgggga cggtcctcca gcggactaca ggaacaggga gaatttccgt
      901 atgaactaca gggacagaga agcacataac atggattaca ggggaaggga tgaacctcca
      961 tcagacttca ggggaagggg ctcttttgat ctcgacttca gaggtcgagg tggttctcat
     1021 tcggacttca gggtgagaga tgtgcctgag ttagattaca ggggcagaga ccattcctat
     1081 tcagacttca gaaataggaa tgtacctgat ttggacttca ggggtgtggg aacctctgat
     1141 ttggacttca ggaacagaaa tgcaccatca tcagacttca
//
LOCUS       KCLA01002165             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35231upu ultra-conserved element locus uce-4711,
            sequence.
ACCESSION   KCLA01002165
VERSION     KCLA01002165.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35231upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-4711"
BASE COUNT          207 a          120 c          127 g          180 t
ORIGIN      
        1 acaattacag gtaatttttc atttcaattg gaagaacagg tataaaaaaa aaaaggagca
       61 agaggaatag agttagtgag atttcccaag tgccttattc cttcccaggt ctacaaccaa
      121 acaggagtgt agagagcttg gtagtttcct ttcattccat taagtaagat ctaattttgt
      181 ctcttctgtc tgttggcaga tgcagtttct acataacaac agcccagaga cagaactgcc
      241 tgattaatgc ctccagctgt catatgcccc attatctgtg catttgcata acttaatggt
      301 ttaggacagg ggagagagga tgcttaattt aatgtttagc aggcccttga tagctgaata
      361 atttaagaac tgtcaaggga ggtcagtcct acagcaattc agcaagacag ctatgatttc
      421 tgaatatcat taaaatcctt actttggata atttaaaaaa aaggagggag ggaacacaga
      481 agaacaatgc ctgaatggag gccctgcttt tctattaacc cttcctttcc tgaggactag
      541 gaaaaagact tgggtaaaaa aacatcaatt cataacataa ccaagacaga aggggttagt
      601 tgtacacttt ctatctccca ttccctaggc tact
//
LOCUS       KCLA01002166             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35247upu ultra-conserved element locus uce-4174,
            sequence.
ACCESSION   KCLA01002166
VERSION     KCLA01002166.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-4174"
BASE COUNT          205 a          149 c          179 g          238 t
ORIGIN      
        1 cttcaaaaag tgattttttt tcccctttct tttagagaca tcaacaaccg cagcagtaaa
       61 gaaaggagga attacacggg cgttcagcct gaagatgtca aacaggtgtg gatattggga
      121 atgatagcac tgaatcgggt ctggggcgaa atgctaatat aataacgtta ctgaagccat
      181 aaagttttag gagatctatg gaaattacac aggtttttta ccctcaggcc ctctggattt
      241 tttcagtcag cttaagattt acacaaggca attcttcatt tttgataaac ttctgaaggc
      301 tcctgcagta gctgcttaag gttcattaaa atgtaattaa ttaatgattt gctgctgaat
      361 agctgctgac tgtggttttc ttttcacttg tcagacagca tgagtcacag ttgccaagcc
      421 gacaccaaaa ctatttgcag actatagcac ctattgatga gtttttcaat ctgcagtcat
      481 ttacatagga aagatgctgg aatacacaca gccagccgag gagcggctac tcgtttgggg
      541 accggggtga ctcgcctaaa gctgttttcc tccagctgca gcgcagtgct tgtatctgag
      601 ctggcagata aatctgcagt gtttcaagct gtggttcggg gaaaactcgg cattcagttc
      661 agattcctgt tgaaatggct acgtaacgat tcacgaattg tagttgttga tttgtttggg
      721 ggggtttcgc tgctggtttt ttagcatgcc ctataaatgc aaactttgct t
//
LOCUS       KCLA01002167            1087 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35262upu ultra-conserved element locus uce-5930,
            sequence.
ACCESSION   KCLA01002167
VERSION     KCLA01002167.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1087
                     /note="ultra-conserved element locus uce-5930"
BASE COUNT          320 a          203 c          199 g          365 t
ORIGIN      
        1 aaactgttgc tggtagcagt gaagttttgt gattctgagt tacgtaagct gaattgtgac
       61 atggaaactg ttgtttattg attgaagtct ttatcttgtg agaatcagcc tctccatttt
      121 tactcctcca ttctagagat ggttgtttcc aatcttgaaa atccccagtg atgacctgag
      181 aaatgtcctt tcaccttcca gatttacacc cagacatctc ctctgctgtt aaaagaatga
      241 cagtatttac ccgacctgta tgcagcagac gtaataccac agtgacccag tgcccaaatc
      301 tgtggtgcac tgaaaaaaat ctgatttcca agagctgttt cgaacacctc ctaaaatgga
      361 tagcaagaag aaattgtttt cacattgcct aggtgttaaa attacatggt ggtgttcctt
      421 tattttcaaa aagcaaacct aatcctgtta attcaaagtg aataacaaac aggactaaga
      481 ctttttccca agttgttaca tttattcaac ctgcttgtgt tttgttcttc atcataatta
      541 tttccaagtc aaatctgcgc tgatttcctt gcggacctac atacctctga ctaacttaaa
      601 gaattgagct gggataattc acactattcc ttgggggtca tgttctctgt tttttttcaa
      661 ggacattttt attacaaagc tgatgaaatt tgcatattaa ttcatttctt tcaatttttt
      721 aagattaaat gttgtcaaca tgtatcagtg caaggctctg acagtgctga tgaaatgggt
      781 cagtcaagct tgaacattta gagtaatgca gccatctgca acccccaagc cccttgtgta
      841 gtttagtgct accattgcaa cttgattaaa aaaaagtttt attcaatgca ggatattaaa
      901 acattatctg tgaaatgata tgtgttcctc ctgccatttg cagggaaagt atatttgaca
      961 acaaaatgga tctaaggatc tccttgctga tttagagtta gtgctttgtc aatcttaatt
     1021 aaactccagt aggaaaagtg tagggggaaa ataagagttt ctgctgtacc agagcttaga
     1081 agttatt
//
LOCUS       KCLA01002168            1142 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35278upu ultra-conserved element locus uce-2701,
            sequence.
ACCESSION   KCLA01002168
VERSION     KCLA01002168.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1142)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35278upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1142
                     /note="ultra-conserved element locus uce-2701"
BASE COUNT          274 a          256 c          326 g          286 t
ORIGIN      
        1 gtatccagcc cagcacctct gcccagacct ctggagaatc gcacttctcc cagtaaatct
       61 ccattcctgc actcggggat gaaaatgcag aaggcaggac ctcctgtccc tgcctcacac
      121 ataacaccag cagctgtaca gcctcctatg atccgacgag acatcacctt ccctccagga
      181 tcagtagaag ccacgcaacc tgtgttaaag cagaggagac ggctgacagc aaaagatatt
      241 ggtaagagga agctcttgta ttctgctctt gtgtgttgag gggtcaaggg cagcccggct
      301 gagtggaaag gctctgctgg ctgtgagaga aacgttctgc aggtttgttg tgttttcagg
      361 cttcattttg gcagcaaagg cggagggagg ttgctggata caatctacac gtcatcttaa
      421 aaaggctctg cccttcttgg gtctgaaaag cagtatcaag tgtctccttt tttgaaactc
      481 ggggagctgc aagtattgtg tgttaatatt acaggaactc ctgaagcctg gagagtgatg
      541 atgtctctca agtctgggct gcttgctgaa agtacgtggg ccttagatac cataaacatc
      601 ctgctctacg atgacaacag cataatgacc ttcaacctca gccaggtggg tgcacatgct
      661 ctctgatgca gggtctttga ggtgctaatt ttgtgggggt ttctggcagc gagagctggt
      721 gctgttgtag ggccagacgt gtggacttcc ctggacctgc agagccaagt cagaagagag
      781 ttggatctgg gtgtgctggt tacactttga ccccaaaata agcatgtggg ttctccgctg
      841 gggcgagagg tatcaactcc agcagagctc tgagaaacag tggggaggaa tttgcagtga
      901 gagcactagg agaggctgga ggctgcaggt gtgagtgggg atcactgacc tctggctgtt
      961 gtaaaagctg ctcggtggcg taaaggctat tgggttcagc actaaggttc acctcctttg
     1021 tgtcaactag aggagagata gaagggtaga ggtgctgatg tgcagaaggt ggcttgtatt
     1081 cagccggtat ccagttctat cttagttcct tatctcacag gacagaaaac tcctttgcaa
     1141 ac
//
LOCUS       KCLA01002169             760 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35294upu ultra-conserved element locus uce-672,
            sequence.
ACCESSION   KCLA01002169
VERSION     KCLA01002169.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 760)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..760
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>760
                     /note="ultra-conserved element locus uce-672"
BASE COUNT          173 a          173 c          145 g          269 t
ORIGIN      
        1 atttatatat gtgtgtgtct tctgtatgtg tctctctgtt tatatatatt ttatatataa
       61 aaatcagtca gtctgttaaa ctggatgtaa gtttttgttt taataaagtt tgccctgcct
      121 ttgtcatatt tatttttttt attcctctac cacaggatag ctacagctct cagggtattt
      181 ctcagccccc aaccccaggc aacctgccag tcccttcccc aatgtcccca agctctgcta
      241 gcatctcctc atttcatgga gatgaaagtg atagcattag cagcccaggc tggccaaaga
      301 ctccatcaag ccctgtaagt ggctctggtt tttgtttatt tttttgtaat taattatatt
      361 tcaatgcttg cttgtttgtt ttgtaaaatc cttttcttca ttatttatcc actgaatggt
      421 tttctttctt tgtaacactg ggtacaaatt ctgctctcgg atacgacttg aagtcccact
      481 gcctagcttc agtggggcct cagcatgctt atcccagggc aacatttgtc ccaacggtac
      541 ttggaaataa gaaagagtaa agtcgcgtgc atcatgcaag tgtgctgtct ggtaatacag
      601 cagttgttgt gaagagaaca tccttcctgt aatgcatcag cttccaagca tgccgaatgt
      661 gttgttaagg acagttccat ttctgttcct gggcccaaac tccttcacac agctgacttc
      721 gctctggttg ctgccctggt ctttgctacg attgcttagg
//
LOCUS       KCLA01002170             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35309upu ultra-conserved element locus uce-4528,
            sequence.
ACCESSION   KCLA01002170
VERSION     KCLA01002170.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35309upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-4528"
BASE COUNT          262 a          203 c          209 g          249 t
ORIGIN      
        1 gaagtgtcag tcaaagaaag aaggcaatga agagatgagt gcatctctct ggttagcaga
       61 tcacacatct ggaggcgcac ttgctgctgg tagctgcatc tctgcttcca gagatgctcc
      121 cctgtactgc tgccatctgc tcctagccac aggtctatct cctcaaggca gagctactgg
      181 gcttccctct ctctttatac caacttgagc tggtttagtt cagagctggg gacagatagt
      241 gagagatgag catgaggtgt tcagtggaaa ctccattgat tactccatgc agtaccttcc
      301 caacatcatg aacacctcag cctcgggaga aaatctgggt tctatcagct cttataagca
      361 agtgtttcga aaggtttaca gaaatgtaaa gtaaacagat ctctgagtaa caaaagagcc
      421 ccgtttatgc attctttgat tcactgtaaa ggatggtgta aactgacttt ttaaccaagc
      481 attaggcaag atttgggccc ccgccattat ataataaaca gtgacatggc tatattaaaa
      541 tatttactta atgcactgaa gtgacttata gtatgagtgg ctactcaata ggatggccta
      601 agtgttaagg cgtcaggtgc catcgcctgt ataaatattc tgtgtgcact tgtttatagg
      661 aaaaccccat ctggatttgg ctaaaacggc agacaccctg ctgaccccag tttttgctat
      721 tggaaaatat aacacaagtg ttcactcatc tagaataaca gcagcagtta agtgccatct
      781 gacagacaga agggtattgg cttttctcaa tagacagcag gcttggtgct gtgaatggtt
      841 tcacaacagc agctccccga gatttacagc atcctgtgga ccagaagcaa aagtctctgt
      901 gtccacagtc gagacatcag ggt
//
LOCUS       KCLA01002171             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35324upu ultra-conserved element locus uce-308,
            sequence.
ACCESSION   KCLA01002171
VERSION     KCLA01002171.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35324upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-308"
BASE COUNT          232 a          143 c          137 g          266 t
ORIGIN      
        1 acaaactttt tatgatatct gttgtacagt cctagatatt tattgctggt ttgaaatatt
       61 tgtaccaagt ttgaataata gcttatttat gcctgaaaaa aaattatttt tatgcacata
      121 ataaagaaat ccgtcttctt cactgatagt atatccttct tgtgaaatag aattcagtgg
      181 acagtggcct ctattccaga ccatttataa ttctgcaaca gtgctgggtg cacatttact
      241 atggtgtgac cttgggcaag acctgtagtc acagtgcaaa gtaaaatgaa gcattgccac
      301 tgcttccttt ctcctctttg gaagttaaaa atactgtgca tggcttttct acagttttgc
      361 acatttgagt tagctcctta cacagcggat acccttaata aaatgacaac agtaatttgg
      421 ttttgtcatt tgaactggca ctggctacat ggctcaaaaa tacagtatta gagtagttga
      481 atgtgtgtcg agtctaattc gtttttccat tttccagaga gctgcttttc cattagcttt
      541 gggaaaacac actggcagat taatttaaaa taagcttagc tccacccttc atataagtga
      601 cttagcctgt gcaataagaa attaagatca agggacgttt tttcattagc ctgtcgtttt
      661 gttatttgca ttccaaagac agcattacga aacacaaccg tatctgtaat ataactcatt
      721 tcagggagcc ttaagacact tactgtagca tatgttaact attacaagat gccttgat
//
LOCUS       KCLA01002172             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35339upu ultra-conserved element locus uce-6576,
            sequence.
ACCESSION   KCLA01002172
VERSION     KCLA01002172.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35339upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-6576"
BASE COUNT          243 a          234 c          215 g          294 t
ORIGIN      
        1 agggagaaaa catctcagag tgctttgtta tgtgaacaat agtgctcctg cccacaggca
       61 ttagtgcaag tggtgaacaa gctggttaat tatattgaaa tcaatgctat tgacttagat
      121 tgaaagctct gctctccttg cattcactcg gtccttctcc aaacagcctg tgctctaaca
      181 cagctcgtat cagaggttgg tctgccctgc tgcacgtctg tgttcatccg ttttgagccc
      241 tgcccagccc agggaaggtc agcagctcca gggatgcatc tcaaatcatc ccctttgccc
      301 cagtttttct tccagaggtt gaagatttgg ggcaacctta ggagttcagc tgctacctgg
      361 agcgtttggc agcccgatgg ggtcccggtg ctgccctgct tatccaagtg actctgggaa
      421 gggaagactt cctgacacat ttgtggcgtg tcaagcacag ctcagttctg gtagcttctc
      481 ccacctttga ctaattgctg acctgacatc tttctgatag tgaccttgtt tcagctagta
      541 attcaaatat ctttcagtgt cagaaataat aagtgccaca gtgagatgaa caagcagagc
      601 ttaagttgag cacagattaa tggggtttta atattcctaa tttaatcact cctttctgtc
      661 tggatgtgtg caacatgatg tagcagctaa ttattttttt aaccatgatg aggatctttc
      721 ctaatcattt ttatatttaa catgaatgaa gggagggcag tgattaatga gggaataaat
      781 ctcacgaaac agaagcgggc acgtgatcag ttaaaaatac agctgtctgg tttattttct
      841 cttaccccct ttccccgtac tgcaaatacc cagctgcacc ttctcagctc cacactgaag
      901 tgtcttcagc cctaaagaca gacctgaaac ttagctcatc cctctggtgc ttctggtggc
      961 atctctctgt gtgatcatct tcacga
//
LOCUS       KCLA01002173             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35367upu ultra-conserved element locus uce-4250,
            sequence.
ACCESSION   KCLA01002173
VERSION     KCLA01002173.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35367upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-4250"
BASE COUNT          291 a          151 c          181 g          299 t
ORIGIN      
        1 cattgttctc tttgtagaga caagctggaa caaataccag ggataaggcc atagtccaca
       61 tatggatgca gtcaggcaga tcaaagcaga aaggttgtat aagagcagca gtttatttgc
      121 attcactttg catcatacat atatgtttaa tattaatagc attgtatgaa tatgaatatt
      181 catctacata tggaatttta tggccaatac ctttaacttg agctgccaaa gccagtattc
      241 aaagggctat gctgccatca tttctgcaaa acgtttacat ttatctgcca taaaataggc
      301 tgaatggcac caaagagtgt cgtgtttagt tttaaaatgc cacaaataac agatttatag
      361 atttttctaa atacattatt ttagcttgac agcattaatc attcatgcat ccttctttca
      421 tttttctacc tgcaatggat tattgaaaca gaaaataaca acgggaaagg ctacaagcag
      481 tatcaaaatg tcaagtttgt acttacagtt gtatgtgcgt agacagggtc aagagcctca
      541 attatttgta tatgtacaca gtggtactac atgaaaggtt atgtcacctg cagctatttt
      601 cttgcagatt taaataggac tgatattcaa gtccacagtc agccactgac atggaacata
      661 gaattgtaaa atactatgaa ctcttatgtc aggacctaaa atatgaactg ggtgattgca
      721 aggtgtagct gtgggcaatc ctatgtattg cagtgtaagt cgtttaaatt actttgtgtt
      781 atccctgacc tgttctttac atttaagtca gaaacaacat ggaagtacta tctagggaga
      841 agaaaaaaca ttgatattgc ccatttttgc agtggcattt gtttagggtg tgagggagtc
      901 tgtggtgtta ggtttcattt tt
//
LOCUS       KCLA01002174             259 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35381upu ultra-conserved element locus uce-2179,
            sequence.
ACCESSION   KCLA01002174
VERSION     KCLA01002174.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35381upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>259
                     /note="ultra-conserved element locus uce-2179"
BASE COUNT           84 a           45 c           50 g           80 t
ORIGIN      
        1 agcagccaca acttagaatc acaaaccctt ttgatttgct gactctttca gtgttcaaga
       61 aggatctttt ttcctatacc taaggacttg agctctctaa gtttgtgact ctaaatcaat
      121 ttaaaaggtg actcaaagca tagagtcatg aaactggagt gggtccagag tgaattaatc
      181 tgaaattaat ttgattttga aaggctccat ctggctgtgt ttggagaaag catttagaca
      241 gacatataaa caaatgatc
//
LOCUS       KCLA01002175             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35396upu ultra-conserved element locus uce-7157,
            sequence.
ACCESSION   KCLA01002175
VERSION     KCLA01002175.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35396upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-7157"
BASE COUNT          275 a          118 c          151 g          262 t
ORIGIN      
        1 attgtccatg tcctataatg ggaaaatgaa gagtaaatta caaaagaata aaaaaagtca
       61 aagggtgaaa acaaattttc cttttttccc ctggagtact tcagtctcca actagacctt
      121 gagggtatta ggtgcctatt catagttagt aaatgaaata gcatttttgt tttaatgcac
      181 tgattcttta acaaatgcta actcccatct ctgcttcttt aaatccacaa aatctccatg
      241 ttcaatccta agaagtatta taaaggctgt aaatcttgtt ttaatggaat gtacatttag
      301 ctatgaggag ataattgacg ttatggaggg cctagatgct gaattatata ggttatctaa
      361 tacaaagggg actcattacc gaagcactac aaacaagtag taatatatgt atattgttct
      421 gagtggcgtt atagcaaaag tgttcgggtc tgcagggatt tataaaacac aagaaaacag
      481 cagacatgca cttgtaaatt tgtctcattt gtctctgaag ttaaaggtta ttcccttgat
      541 ctgaatttgt aataaaaaca tgctagacta aggtttgtag agaatgtttg aatatgtaaa
      601 ttgtgtataa tgataggcaa ttatagggta aaaactggac cttgtgaatg ttacagaatt
      661 gcatggagca tcaaagtatt ttccttcaga tgaaatattt atcttttatg catgttataa
      721 gcactttttc aaaggtattc agcaacctat ttgagtggaa agttgacaaa aatcaaacca
      781 ttacagtcaa ctaaggctgt gggctt
//
LOCUS       KCLA01002176             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35410upu ultra-conserved element locus uce-4950,
            sequence.
ACCESSION   KCLA01002176
VERSION     KCLA01002176.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35410upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-4950"
BASE COUNT          117 a           75 c           77 g          109 t
ORIGIN      
        1 tttaacaagt ctgactgcac agagtttata tagacacatc agagtcaaga caggaaatct
       61 gctctgcagc aagtgacatg gacatagtct ttctgccctg cacaatctgc agtgtgcagt
      121 cacagcagac cgtgcttttt ctgtgctctg tgttgtagta cttacttgac aattccctgc
      181 ctccaaagga aagcaagtta aaacataata caagcattaa cagtttcttt gcagtggctg
      241 aaaataaacg tgcttttatt acgttacggg atgaaggagt tccaggaaag ataagacaca
      301 gtcagacatt agagggtttt cagttcttta gatactgtga acacagcaaa taaattcctg
      361 ttactaatga ttaccttg
//
LOCUS       KCLA01002177             918 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35426upu ultra-conserved element locus uce-2346,
            sequence.
ACCESSION   KCLA01002177
VERSION     KCLA01002177.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35426upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>918
                     /note="ultra-conserved element locus uce-2346"
BASE COUNT          222 a          233 c          172 g          291 t
ORIGIN      
        1 atccaacagt gaatctttaa ggaagtctct gtaagtaggt aattttgctg ctcattcgcc
       61 ctgcatttgc tgtacttaaa atagacactt gtgccggcgg cctttttatt atccggagag
      121 agggggaaaa aatcacatac acaccagtcc tttttctttc tgctagcaaa gggaggcaat
      181 tcaatccaac gtgggctgaa acctgagtag gtcactgtac accaggataa aattccctaa
      241 tccctgagcc aaatttctct gagggggccc tcctacttct ccttcacttt ccaagctgac
      301 ttttccattc cctctcttgt cttttcctcc ccttcatctc tttcatttcc cctaccttaa
      361 agccttgata tctgatctgc tgctgatact cgggttacag tttttacagc ttaggctgtc
      421 tattgctgta tacattcctt tctttctgct ctgccgtgat tacttaccag agcttatttt
      481 acactggtcc agatgaaagc agttcagatg aaggggaaca gccagcctgt ttgaacactg
      541 cagatatgaa cccacacaag ggcacattgt gctccctctg tcatttcgtt gcaaacattt
      601 tgcagagtgt aaccaatttg ttacgtaatt gtattcctcg gctttctgaa gggctactag
      661 atgtcttaat tcatcgggaa agagaaagtg agtgatcccc gcaggatttt aactttctca
      721 agcagtcaca attcaaatag cttcttattt tttttttttc cccttccctt cttggacgct
      781 ggcagcctcc tgcactactg aaaatgtgca gcatatttac agttcacact gaaaggtggt
      841 ctgtgctctg ggaaaggttc tgccaccagc tatctcaccc ttgaaaagaa accacgtcac
      901 ctcaaagacc gcttctta
//
LOCUS       KCLA01002178             324 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35440upu ultra-conserved element locus uce-2180,
            sequence.
ACCESSION   KCLA01002178
VERSION     KCLA01002178.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 324)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..324
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35440upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>324
                     /note="ultra-conserved element locus uce-2180"
BASE COUNT          114 a           58 c           50 g          102 t
ORIGIN      
        1 gactttgcgt aatagacctt atattttatg ttttcaatga acaactcata cagggttgag
       61 ccaagggctt aatcactctt aatacaataa agcagcactt taaaatatta ttaacctcat
      121 ctgtctagat ttggaactaa tagaccattg tgtgtgtatt gtctttatcc ctgccagtta
      181 tgtacatatt tattaatcca ctcttccaga ggaaaaattt ctaaaggaaa accaacagta
      241 accttcaact gagcaggcac aggttagaag ggcactaatt aaatgtcaga cttgacagat
      301 taaaattatg aaatttaaaa tcac
//
LOCUS       KCLA01002179             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35456upu ultra-conserved element locus uce-2119,
            sequence.
ACCESSION   KCLA01002179
VERSION     KCLA01002179.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35456upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-2119"
BASE COUNT          152 a          210 c          205 g          202 t
ORIGIN      
        1 ctttaaccca ctttcgcctc tgtcgtcagg tgcgggttcc cgcgggagcg gccctttgct
       61 ccccacggca gggcccaggc ggccgcagcg ccgccgtcag ccgcgggcat cctccccaaa
      121 agcgggcgga tgataagtgc ggctcctgct gtacctgtaa caatttaatt gtgtaagtca
      181 gcccagtcga gcatccccgg ctcatgactg ggagacatga aattcattgt cattattgtc
      241 cctgtcattt tggatcatta tatcccgctg cagaattttc ctcactccag tgctttccta
      301 cctccaggaa gcaggattat ggctgaggtt ggggtggggg caggactgtg aactacattt
      361 acctcagggg agccacagat taaattggct ttgctccctg actcgctgga ttcacatgtt
      421 tgtacgccgt ggctctaagg ttggagatga tgaatattct agcgcattct gtgccgctct
      481 ctcttccccc ctctcgctct taatgctccg ataggcagag ggcgcggttg gtgtccctta
      541 agcagtgaac agggagcagt tctctgcatc acgttacctc cacgattgga gattattccc
      601 gagcagagag acgctatttg cacactgtgc cacaaacatc tgagcgctcc ccagtgtgtc
      661 gtggctttta ggggaaagac tccactggag cgtgtaactc cgccgtaatt tatccacgtg
      721 gactttatgg ggacttaatg accgggcagt ggttaatgtg cacattgtt
//
LOCUS       KCLA01002180             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35472upu ultra-conserved element locus uce-2842,
            sequence.
ACCESSION   KCLA01002180
VERSION     KCLA01002180.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35472upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-2842"
BASE COUNT          184 a          181 c          213 g          208 t
ORIGIN      
        1 tccgcccttc ccactcctgc actcgctggt gtctctagaa gcccttggtg agcaccagca
       61 ctgtgtttgg aaaatcaaca ccttgcttcc tgcagagcca gcagatgtgc cagcccgtgg
      121 tggctggttc ctcctgttct ctctttgtgc taggagtaaa gaatgtgctg accttaggcc
      181 ttagcctatc agatggagcc ttcgggcaca gagcagccct attcaaaccc gggcttttct
      241 tgctactgga gtccctaaca attggtaatg aggagagatt cagaattgtt tgggagcagc
      301 tgcttagtag gtaagagctt gtttggattc aattgaacag tgtttttaga agcagttact
      361 gacccctgac ccttcctaca gactgggttg atgggattag ggaaagctgg ctttcggctc
      421 acccttggct gtaacgagct ggcagagata acatactttt taattatcga gttccacctc
      481 tgccaaagtt tgtgaattta tcagctgggt caatggacta ttaggagcca aggcaggggt
      541 ggggtgacag ctacatgaga gagagtggca gcagaggggt cattaataca ctggcatttt
      601 ttcccccttg caaatattcc aggttttctg accgaaaggt acctgccccc cgcacgcgtg
      661 gtgaaggaac atgtggcatg cagtgttcgt gcctgtgtgc tttgtaaggt ggagacccga
      721 actacttcca agagctgcca gggagggagt caaggaaaag accaataaat tgtggttcaa
      781 ctggaa
//
LOCUS       KCLA01002181             570 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35488upu ultra-conserved element locus uce-5392,
            sequence.
ACCESSION   KCLA01002181
VERSION     KCLA01002181.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 570)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..570
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35488upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>570
                     /note="ultra-conserved element locus uce-5392"
BASE COUNT          171 a          101 c          111 g          187 t
ORIGIN      
        1 gcgttcccta aaccttaaaa gcaaaataaa agctgctgtt tcctattttc acaaatgaaa
       61 agatgtttca agtattggga gacactgaaa gaaattctgc agtttgaaga tacttcaact
      121 taactactaa ttgcagagga ccagtgggcg taattttggc actctattag ctttgccact
      181 ccatgaataa tttgcataca aaatgcttta ttttggcaat ctattaaaga gccatacagt
      241 atttgtggct tatcgcgttc acgcaggaag caggatcctt ggccatctcg ttaaattctg
      301 ttgatgcata acaatttaaa gcatggcaca agctggtatg acatttaaag atgccttcac
      361 ttaattatat tacacaaata ttgggttgtt tatccttggg aataaagtct ttttgaagtc
      421 aaagttggca tgcgtataaa ggaggaaatt ttaactgatc cctcaagtgg gcctcctagc
      481 tgcaaattgg ggttcttgca ttttttaaat tatttgtgat aagaagcatt acactttgaa
      541 tgctgccact ggagtttgtt tggtaccctc
//
LOCUS       KCLA01002182             254 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35504upu ultra-conserved element locus uce-4147,
            sequence.
ACCESSION   KCLA01002182
VERSION     KCLA01002182.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 254)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 254)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..254
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35504upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>254
                     /note="ultra-conserved element locus uce-4147"
BASE COUNT           81 a           46 c           59 g           68 t
ORIGIN      
        1 aagggcccag catattcatc tgtcaagtat gctaatgggg aacggaccct gtcacacaaa
       61 ggagcaggct attcaaacat acatttggca aataattgta catgtcaaaa gaatgatgct
      121 tgttatttgc ctaatattat cccccagaag tgggaaatag ttcagctctc aatgcaaaat
      181 ggcttgccct tatcaaatag gcaatttgct gataatttag actattagag atcttggggt
      241 ggggggacaa aggg
//
LOCUS       KCLA01002183             283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35519upu ultra-conserved element locus uce-3933,
            sequence.
ACCESSION   KCLA01002183
VERSION     KCLA01002183.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 283)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..283
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35519upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>283
                     /note="ultra-conserved element locus uce-3933"
BASE COUNT           95 a           71 c           51 g           66 t
ORIGIN      
        1 gcgacgatac aggcaacacc ccacaggaca cacgactgtt aaagacaact acctggtaac
       61 aaccctccgc ttcctcccta agagccgggc acacgctgaa gccaacttcc acaccactac
      121 aacgctcatt cgatgcaact cagtaatttt tattgcaact ggaagacaat acatcacaga
      181 aactttatgg taggtcttgg ggaagtgtta tttacaataa tcatcgatga aatagtttgt
      241 ctttggcaat atgattacac atcaagaaaa tgtcaaatgc aag
//
LOCUS       KCLA01002184             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35535upu ultra-conserved element locus uce-7487,
            sequence.
ACCESSION   KCLA01002184
VERSION     KCLA01002184.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35535upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-7487"
BASE COUNT          308 a          188 c          153 g          309 t
ORIGIN      
        1 tagtcagaag cttatttggc tatctatttt aaaccctcac agtaggtaga aaaaaggaaa
       61 tttactggaa attaaaaaga atattcttac aagcctactt gcttatctgt gtcttgaatt
      121 gtgcagtggc tttaacagtt taactcaaac taaattagaa ttactgagtc tcagcaataa
      181 ttaagcttgt agcttttatg tatttattga ccttactgat tcctttattt atttagtaaa
      241 gatttcttca gcgtttctgc agttcagtcc atgctaggaa aacagtatcc tctcccaagt
      301 tttaactttc tcagtttcct tgcaccatgg tttgacctgc aggcaaatga agccattcaa
      361 atattttctt atcatctgtt ctcatcagac cttgcaattc cagtcgtgcc ccacatgtct
      421 gtttaaagca taacatcatt aatacttcca gtgcactaat ggatgcttca cacatgaacg
      481 cattaatgaa atgtgttatt gttttccatc acaaggcatt aacaatctca ctcatgctgt
      541 gcccctgaag ccttgcaatg ctgctgaaac cactagctat caaatgaacc ctcagttaca
      601 cctcagtaac tttaagttca agtttatcac tgaagtgtca ctcatgagag aagatacaag
      661 cctataagat cttttgggcc cagcttcaat taccataaag actaacagga ggcaatagct
      721 gcaaggggaa aatacaccat cctataaatg aaactctgtc aagataaaat agaaaagatc
      781 tgtgtgtcaa tgtagctatt tgtttcttgt ttctaccctt tgccaatgac ttggataatg
      841 aagacaagaa tggttttcta gagaacagaa acaaaaatag tgtattttcc tgctaaagac
      901 attaaatatt agaggcaata aagattattt aagccaacca tattagaatg acttttct
//
LOCUS       KCLA01002185             970 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35550upu ultra-conserved element locus uce-6932,
            sequence.
ACCESSION   KCLA01002185
VERSION     KCLA01002185.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35550upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>970
                     /note="ultra-conserved element locus uce-6932"
BASE COUNT          273 a          274 c          220 g          203 t
ORIGIN      
        1 cctggcctgg ctctcctcca cacagagcag agccacatac aaagggcttg aaagacagag
       61 gtggtcagat cttggtcagt taagaatttg tcttcgtcca acagtacctt cagaatcgat
      121 acagatagag tacagagggc tacagaccct cccccggcta ttttaccaac agagttacct
      181 tgttctacag gaaaggactc ccgagataca aacaccctgc ttctgggagt cttccctgtc
      241 caagtcctga gagcacatct gaaacacgtg ccaccctctg ccacaggaca gctgtcccct
      301 gctcagcccc tctgccctct ggcccacaca ggacagaaaa aagaagcgat catacagcac
      361 tgatgccaga agtcagcagg aagcaagctc ccccctttct ccttctcttt ctttctcttt
      421 gtgtgtttct ttcatccttt aagacacaaa cctgcaagtg cgctcgttta actcaagctg
      481 cctcgacttg caacgtgagt ctgtgaattt gcaggaacat ttacaggtct ggggatcttg
      541 tacaaacaag tgctttctcc tctctgagca aggctcacag tgactgcaaa aaggcaaaag
      601 gaaagatgtc taagctacag cgcttcagca gaaagaaaat acacatgcaa caccctacac
      661 atcaaagcaa tccccttgcc ccctcccacg gcccccatgt tgcccgctgg agcactgcgg
      721 gctgatggat cttccagcag caccccagag cccccagaca gcaccccctt gcagtagcaa
      781 aaagagaaag aaaacaggct atctgcacag gattcacaaa tgctgcattg gatctgtcag
      841 cacaggtcag agggaagaag aaggaaaggc aaggatggga agttgagagg tcccaaccag
      901 ctactgatct atcagtggaa ggagttttct gaagtgggct gctcaagcag aaagaggcca
      961 gtggctaaac
//
LOCUS       KCLA01002186             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35565upu ultra-conserved element locus uce-1183,
            sequence.
ACCESSION   KCLA01002186
VERSION     KCLA01002186.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35565upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-1183"
BASE COUNT          277 a          222 c          179 g          265 t
ORIGIN      
        1 ggactcattg ggtggtgaat tatttatcac aaatattatg aatgaattat ttactgcaaa
       61 tattttccaa cacataaaag ggagaagctt tctaggaccc aattccgttt gttcatgtca
      121 tcctcatcag tttaagtccg ttgcagaagt cgtccttgtt tccaccagga acgcaatgtc
      181 tctgtgctga gcaactcctg gcagtaatct gagagtaacc agaggccatg gaccatcgta
      241 tttgcaccct tctgaaatga tgacatcctc cccatcaaga gaaacaggcc ccagaggtgc
      301 cacaaacagg aaaacaaaca gcgttcgagc gagaatatta gagataaagc aaacacaaca
      361 tcactacaaa agtctaaaca cttgttaaac tgtctgattt tagaacattt cagccataca
      421 acattattca actactcatc actgtgagaa caggcaatca ggaaagctaa tttcttaatt
      481 agctctgctc cggcggtaat gattgcagat cgtgtcaact aaaatctgtt tggatttctg
      541 taaattggag tccgacaagc ctgcagttcc gtcgccaacc tgataactct cacccccctg
      601 tcttttgttt ttccttccag cctttttcct gtcgccatct cggtatttaa tctgacaccg
      661 ccaggcagcg agaagggttt actcttcccc tcgccgagaa agagtgcgag agaggaggaa
      721 aagcaaaaca tttacgtggg gacaggaggg ctggctgcac aggaaacctg gaccaaacct
      781 caactcctga caaaagcctt taatctttct cacattcctt aaggcattct cctcctagta
      841 taggacatat tcctttcaag tacgtcctga taagggaata tttcgtaatt attttcttta
      901 aaggaaatgg acatccttgt aagtctatca tcttatttac ttt
//
LOCUS       KCLA01002187             881 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35581upu ultra-conserved element locus uce-5409,
            sequence.
ACCESSION   KCLA01002187
VERSION     KCLA01002187.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 881)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..881
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35581upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>881
                     /note="ultra-conserved element locus uce-5409"
BASE COUNT          282 a          157 c          169 g          273 t
ORIGIN      
        1 tctttgtgta aaggagatca gtggactaat aatgacctgt acaaggtcat agagtaagtc
       61 aagcagaact ttgtctcttg ctgcatactt gtaatgccaa atcacagctt ctctaataac
      121 aatttcctat ccaactcagc caagtgtgcc tgaagagtaa tttgctatac aaatttgtca
      181 aagtctagtc ttcacactgc catgtcaatg tgacttaaaa ctgataagag taaatcatca
      241 ttaaaacaat tacaaatatt cctgaaagag gtgtgcatgt aataacaatt tcactactga
      301 tatctaatta tgtatttgtt gctttcagag tgcctgtaaa gatgacaaca aaagcaccaa
      361 cattcacgca gccattacaa agtgttgtgg cactggaggg tagtgccgca acctttgagg
      421 ctcatattag tggtaagctt ttgatttatt cttgcatttc tagcttttct tgtgttgttt
      481 gtcttaacat aaacactttt catagaccat aatctaatct gaaagggtaa ggatcagtgc
      541 tgaaatgtga atacctatcc aaattacact gttctgattg gcactgtgag gggctatgag
      601 gtgcacacaa acatacacat aaaatcagat ggcaagaggt aaacatcctg ccagtgagac
      661 tgctctgtaa ttctcatgtg tgttacaatt atcatatgtg gaaatggcat taaacgcgta
      721 tacaactgtg ctgatgaggg aactttgtat gcctgtggag agaataatct tttttgcata
      781 atcagacaga atgaggagtc aaggtacaca aggaaaaaaa tacatattct gggtaaactg
      841 tatttctaac tttagtgcct ttgacttcaa ttcatttcag a
//
LOCUS       KCLA01002188             890 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35597upu ultra-conserved element locus uce-4232,
            sequence.
ACCESSION   KCLA01002188
VERSION     KCLA01002188.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 890)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..890
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35597upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>890
                     /note="ultra-conserved element locus uce-4232"
BASE COUNT          282 a          169 c          166 g          273 t
ORIGIN      
        1 atcaaaatgt aaggagtgat ggcaaatgca gaagcagggg actgcaggga tgctgtgctg
       61 gttggaactt ctctgcactt tgcctgtgtg cagctataac ccactctgct gcaaaagcat
      121 ggagggaaat tcctccatgt tcattaaatg ctagaggaca ggtttttttc ttggcttagt
      181 ctcttccttt cttaaataca gacctgctcc acctggctcc gtaagcaggt tttggagcag
      241 cattcatgat gtgaagaagt ggggtttttt agtgtgaaat ttatcccctc ccaaggctgc
      301 acaatgagtt taatttagat gggtatttga gcaaagcctg cagtgttctg tttccatatc
      361 tactttttgc atggaactgg tccttaacag agatgtgaaa acaccagcac tttatctgct
      421 cctctgagct gcaccctttt agtggacatg aagaaaataa gaccacacat aaatgattaa
      481 tgcagaaact tggaagaaaa tattacaggg tgccttgctg tttgattaca agccttggaa
      541 ttagtcaaca tttccataat tctaaaccaa tatacacctg ttttcccact gtgatgtgaa
      601 ggcacaactt catttaagag aaaccctgct gtgctaaatc tctcattaaa taccaagcta
      661 gttctgtaat ttaaagttgc agcaccacta ttttaactga attgcctttg tattataaaa
      721 ttaataagaa gttaatgatg cacatttctg tattctctca gatttttttc acagtaacaa
      781 caacaaaaaa gaaagataag gaaaaaaaac atgtcaccag ctgacatctc aaggtttttc
      841 tgattttaat catttccctg agtataaaaa aaatataaaa taaaataaaa
//
LOCUS       KCLA01002189             303 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35611upu ultra-conserved element locus uce-2531,
            sequence.
ACCESSION   KCLA01002189
VERSION     KCLA01002189.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35611upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>303
                     /note="ultra-conserved element locus uce-2531"
BASE COUNT           89 a           43 c           68 g          103 t
ORIGIN      
        1 gaagcggata cctctttgtc tgtccttgcg ccaacagcag cagaagggat actaattaga
       61 gggtgaatta ttagcttccc atggtgcact gcaggggcat taaaaacgag tggagtttgt
      121 tgctttcctt ttagatggtt aatactgatt taatatattc ttgtttctag gtgagcagca
      181 ggggacagtt tttatgatta taattgttgc ataattactg gcctaaggtt gcctattgtt
      241 aaacaaaaat tctgaggtac taatgtttta ttgaacagta caagtagata aaattgtaat
      301 ata
//
LOCUS       KCLA01002190             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35627upu ultra-conserved element locus uce-902,
            sequence.
ACCESSION   KCLA01002190
VERSION     KCLA01002190.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35627upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-902"
BASE COUNT          195 a          215 c          165 g          198 t
ORIGIN      
        1 agagctcccc gtgcgcagca gctgagcgca gcgctcgcta cccaccccct gactcacacc
       61 gggacgccga gcatcacctc tccccaccca gcacagcaac tccccgcgag tcggtgtcgg
      121 aacccctccc gaatcgtgag aacttttata aaattctcca ggaccgctgg agcggaacct
      181 attttctctg ccgacgcaat taacggcagc aacatttacc aaatatgatt acaagcactt
      241 tggttaagta gaggaaagta tattagatag cagcgagggg ttgatcttaa tgtgcctttt
      301 ttcgagagac ttgcattttc tttgtgcaaa taaagaggcc ctaaattctc cataggcact
      361 aaaatcaatg cagtggaacc acgataacaa acacaggctc cactctttgc tacatccccc
      421 aattaattaa gcctttcacg ggcatgtaat taggaacatt agcaagtcat aaaattgccg
      481 tgagtctcta aattatgtgc tggccctcag caatttgttt ttaattcctt ttgaagacaa
      541 tggcactgcg gggtcccata gatcttcata gcagcctact gtttacttct ttatggctct
      601 atgaagatct aactgttttc tactgctccc agatgcaccc gcactacttt cttgcgtggt
      661 ttcattacct gagctggatt taaagaggaa cggaggtgtc gtgctctacc accaccccac
      721 ccgtgcgggg atgctctccc ggactccggg cttcccatca gagagaggcg gcc
//
LOCUS       KCLA01002191             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35643upu ultra-conserved element locus uce-2486,
            sequence.
ACCESSION   KCLA01002191
VERSION     KCLA01002191.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35643upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-2486"
BASE COUNT          199 a           87 c          102 g          164 t
ORIGIN      
        1 gcttttcatt ggtggacaca gatttaagct aacataactt ctgccaatat ttaatttgtg
       61 tgaataatat actgaagcta agagaaagaa acagaatttg aaaattaatc aatgaacctc
      121 aaatcagttt tcaaatgtgt ggatttagtt ttttgtaaag aaaacaaggg aaagttttta
      181 aaatatccat gaaacataaa ctgaagctga ggcctttcac aagatcaaga caagatagag
      241 cacaacctgt aacggtgtat cttagggctc catgacttca gtttggaatt cggatgcttg
      301 tatttggagt aaattaaaca aagctgagcc catctagaga aaaaaaacag caaatcaaat
      361 tatcttcctt ttgcctatgt gttatcaatg atggagcctc cttctgttgt gtcatgcaga
      421 gttatacata ggcattccta atgacgtagc atctaagcat cacaaatggt aacaatgcag
      481 cacaatgaaa actcagtatt atgagtgaga ggaaagtgct gtgctgttct taatacttct
      541 aataataata aa
//
LOCUS       KCLA01002192             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35658upu ultra-conserved element locus uce-6896,
            sequence.
ACCESSION   KCLA01002192
VERSION     KCLA01002192.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35658upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-6896"
BASE COUNT          137 a           93 c           74 g          164 t
ORIGIN      
        1 gggcatatga cacagaacga acaagaaggc tgcccagctt aagtgttact ttctcatatt
       61 ctttttccag attgctatat gaagctgtac ataatataaa cacatattct tgtctctagt
      121 tagtcacatt atagttaatg accatatggt cattatggta taagatctac tgtctgttgt
      181 atttatattc ctcaagcata ttgttccttc aacttcacag tgtgttaaac tatttcaaag
      241 ggaaaaaaat cctttccctc ttgtttctgg ttgtcctatc aagtgtaacc ttggaccctt
      301 atagagcaat tagaccagcc tctatcccct cctttgtaat gaggtttctt gcatttctga
      361 gtctataacc ctttagtctt ccctaatggg acatcattat tctgaaagaa acaatgtaaa
      421 tgtaaatgaa tattctcatt aacgagtcac agagaaacct ttagtggt
//
LOCUS       KCLA01002193             567 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35674upu ultra-conserved element locus uce-3072,
            sequence.
ACCESSION   KCLA01002193
VERSION     KCLA01002193.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 567)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..567
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35674upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>567
                     /note="ultra-conserved element locus uce-3072"
BASE COUNT          193 a          104 c          109 g          161 t
ORIGIN      
        1 aaggaagcaa ggcaaagaaa ttctaaaaag gcatattttt agctaaaaaa gtaagattag
       61 aaagtggctt gcatgagacc aactgtgatt aaaaaaataa accttttata gttaagacag
      121 gtttttttct tttttgttct ttgacttttc cttgcagaga aagaggctat cttcacttaa
      181 tcagagcaaa gaaagagtgg ctgaggcaga agcagcatca tgtgggtgaa ggtcaggcca
      241 attttcatcc atgtgatgct gctttatcac tggtggaaca aagattaagg cctttctttc
      301 ctttatcctt ttgtgctttc ccccattact ttaacagatc tgaacaaatc ccaggcagtt
      361 catccaaaag ttccttttag ctacatttag ttcagatcct ctaaattcca cataagactt
      421 catactctag caacatgaag aggatataaa acccacatgt gtaggaagaa aaatgttata
      481 gagaaacaca aaaatcattg cagaacatga tgacagcaaa ggccttttca gctgcatgaa
      541 acagggcagg gctgagaatt accagtc
//
LOCUS       KCLA01002194             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35689upu ultra-conserved element locus uce-991,
            sequence.
ACCESSION   KCLA01002194
VERSION     KCLA01002194.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35689upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-991"
BASE COUNT          195 a          127 c          144 g          212 t
ORIGIN      
        1 tcgcttggat ttgattgatg cactctcata tttgaagttc actcgcagct ttgtgctgga
       61 agaccagggt cactccatcc agtcctctaa tgagactgtg cacgaacact cgcggctttg
      121 taggccttgt tttaatcaga gattgagaaa cactcctgac tgatagtctt caggatcaga
      181 tctaaacaga aaataacatg ctcgatttgg cctctgaagg tgggttgagc gaatctttgt
      241 gatgtattgg atcatttgcg gagtgcaagc gcacgtggtg cggttcctat ttctgtcggc
      301 aaatacaaat ttttcactca gcaggcataa tcagagctaa ctcgagagga gaaataacaa
      361 aaactcaaca gcccttagca actcagcatg gcatagaggg atttaagact ttagcatttt
      421 atctctatca gtatgaaaat gtatgaggaa atctgaactt tggaagtgca aataaacaca
      481 tttaacacat tataaaccac ctattctacc agtgattcct ggatcttttc ttctcttggg
      541 ttctttcagg ctctcttttc tgaaataata aagctggttc attagtttgg gtttaaaata
      601 aaatcaattt gttttgacag agttacttta gaggtaaggg agggagtgtg tgaaatctat
      661 tgttagcatc tctaaact
//
LOCUS       KCLA01002195            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35705upu ultra-conserved element locus uce-725,
            sequence.
ACCESSION   KCLA01002195
VERSION     KCLA01002195.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35705upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-725"
BASE COUNT          263 a          297 c          248 g          366 t
ORIGIN      
        1 tggtttcaga gcgcatgctg tcttcagaca ggttgccatc ttcatcattt tcggagtcag
       61 tgctgtcata gatctggtag aacttctcct gcagctggcg cagctgcttc tgcatgtcct
      121 ccagctgctg cttcagctgt ctgcgctcct ctcgcttctg ctctttcctt gccgaaacca
      181 gctgctggaa actctgctgc tgctgttgtg gcagcttttg cttgcgtttg ttttctctgt
      241 aactttctcg gggactcacg gactgcggag ctatttctct ttcattttca ttgcccctta
      301 atgccacgct gggggaatgg ctcatacccc gaattatatt ctcaacccgg gcgcgtttag
      361 ctctcaggtg ctcgtcgcat aaccgatcca catcaaactg gctcatagtc ggcctgccaa
      421 aaggggaaag acactcttgg gggctgtctc ttgaagagtt gctgcataca tcctcctgat
      481 gtacttctga gccggtacta gagagaccgc tggcttggaa actgggctct gtgccaccat
      541 ttttgttcat gttatttttc aacagctggg aaattatggt tgctcctgga aaaggcatca
      601 tggcatcttc atatgagttc gccctcttca gcagcttgcg gagtacattt gacttttccc
      661 catctgcatg ctgcaccact gaatactcga catcctgctc tgaaccttgg ggattcatgg
      721 cactaaaaaa cgttgctctt gcctttgcaa aaaatgcaga tgctgtccct accgtccttt
      781 tcactccaat gtcaactctt cttctcttgg tttgcctgct taagagggct gtgctgtcat
      841 ggtcaggcat cactggactg ttattgtgcc atcttcaaaa gcttgtcagc tgggctcagc
      901 tcaagaatcc tgggaccctg gccaacagaa caaaaggact gatgaatcat tttctttaaa
      961 tttctccaaa tttcctgacc tcaatcctga ataaaatgca aaatgcatag gctctgggat
     1021 ttatggcaca ttacaattat tgcaatttat tatgcactct gcttgaaatg aaacattttt
     1081 aaatatttct gctccactgg tttaagatgg attaagattt aaaaaagcaa aaactgctta
     1141 agcaccagta atatgattct cttgcacaaa tgcc
//
LOCUS       KCLA01002196             740 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35720upu ultra-conserved element locus uce-7348,
            sequence.
ACCESSION   KCLA01002196
VERSION     KCLA01002196.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 740)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..740
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35720upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>740
                     /note="ultra-conserved element locus uce-7348"
BASE COUNT          163 a          199 c          152 g          226 t
ORIGIN      
        1 cttgactacc ccaccaggtc ccttcctcca aacctcttta agccaggacc tcctcttact
       61 tccacctcac cctgatgtcc agcaccagca ccttcctttg tcattctgat ttgctctcac
      121 taatgggtac cagcacttct acccttgttc tgcccattat tcattgttct cttggatctc
      181 ccaagcgaaa tttctcttct agtaccttca actggactgt cccattcctg agctggctgg
      241 caattgttgc cctttccgtg ttcaccgtca tcctgtactt cattccgctg aggtacatcg
      301 tcctcgtctg gggtaagcga agcctttctt aactcttact cagaaaaagg ttcctaacgg
      361 atgtcttacg ttgtcagtgc ttctctgtat ggacggctgc gaggctgccc tgtagcggaa
      421 acagacaggt tggttaaaaa tctagaccca cctgcacgat gcctttttgt cagctggcat
      481 tgtagacttc atcatcctat aaacaagtag ctgtgaggat tcttcagctg tcaaaatgaa
      541 gctctgtcta gatattacgc tgatttattt tcaacactta cacgctaacg gaggcatttc
      601 aatccgtaca gagcatttag gactgtattt tcttacagcg gtgctttatc ttgtggagtc
      661 acacgtaaac gcagcaatga gaaaccttgt ctaagggtaa ccttgagtgg gacaggaagg
      721 ggtgtcgggt gttcagctcg
//
LOCUS       KCLA01002197             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35736upu ultra-conserved element locus uce-5661,
            sequence.
ACCESSION   KCLA01002197
VERSION     KCLA01002197.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35736upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-5661"
BASE COUNT          281 a          225 c          161 g          273 t
ORIGIN      
        1 gacaaacaac catccaacaa attaatctcc taatggtttt gattagatgc atagatgaga
       61 agaaggtttc agttgagtta attttttagg gacccattca tccctccaaa ctagactcaa
      121 agcttccaaa gcacaaacac acacaagcta aatccaatga gtagctcccc caaatccctg
      181 caaagccaaa ccattcaggg tcacactgct ctgccaataa caggaacaag taacactacg
      241 ctcagactac agtttttcat atccagtgtg ctgttgtcat atgatttact gtgctagctc
      301 tgaaagccat tgcccaagcc ctgtctgcac tcctcctgat ttacttaaat ctttttactt
      361 ttatcagcca cagggaatgg ggacacttac gtgtaacaac tgacaatttg aacagaaaat
      421 acagagaaac gctgtgtaaa gcaagtggct gagattatag ctgttgactt ctaatattat
      481 ttgacagatg agactgctgc aattatcctc tgctcatggg ttccattact agaacaagaa
      541 gcgcacaaaa taagggcaat ttcccaaaca atatataggg ccacttaact ttgtgaagag
      601 ccatttctgc aagcaaagtc ctccctggtt aaagatacaa ggataatgtg ctggcaactt
      661 cacacgagca tttagcacat tccacgctca ctgccttttc agtgttcttt tcctgctctg
      721 tttgaaccaa ataggatatt atttctaaag atatttgttt taaaataaca ttgtcctact
      781 gctgctccct ccccaggtta gtgtaaaaaa gatgtttcgt aaggttttca gcccatgaga
      841 tcactttgta tttttacatc ccctacatca tcttgtccca tgccctatcc gtctctttgc
      901 actgtgaagg aagaccagcc ccctacaagg ctttctgtgt
//
LOCUS       KCLA01002198             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35752upu ultra-conserved element locus uce-6121,
            sequence.
ACCESSION   KCLA01002198
VERSION     KCLA01002198.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35752upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-6121"
BASE COUNT          265 a          135 c          144 g          239 t
ORIGIN      
        1 aagccacaaa actaaataaa aagagattac cagccacatt gtagtaagca aacagtaaag
       61 tcttaaatga tcaatacttg acaagagaca tgtcacaaac ttcatgtata ggtcagacac
      121 acacaaagtt ttttaaatct actaccttct ggacaaggca cataaaacat cacttttcat
      181 ctgtcagttg gtatttttct cagacagtaa aaaaaatcac ctccctgaga gatttgatcg
      241 aaaagatagt cactcctgat acaagtttag gggaaaaaac tgcaatcgag tagcaatttt
      301 tgtcagcgcc ttaatctctg atttgtagaa ggttgtgctt tgggatattt ggtatgtctg
      361 agaattgtca ccagagagcc cttctgttct ttaatggctg cactaaatct taacaaacgt
      421 gagcatgaaa actattgtgc tgtacttgtg aagcatatat caaagttcta aaagcttgga
      481 aaggcagttg aatcatgcat gctctttatg gagctctgat cagcctgata aaggcagttc
      541 agcttcaata aacggttttt aagtgaatgt tttggaaagt gaataggaaa ttcaaagctc
      601 aaactgttgc caaactgctc ccatagcact ttgatcactt tgctactgac attttgttaa
      661 aaatgtcttg tttttattaa aatgttggca tctggggatt cagaaagtta actatagtca
      721 ctgaaaaaat aatatgtagt aaagctgagt gacataactt attaaggact ttgtacacat
      781 ttc
//
LOCUS       KCLA01002199            1184 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35768upu ultra-conserved element locus uce-431,
            sequence.
ACCESSION   KCLA01002199
VERSION     KCLA01002199.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1184)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1184)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1184
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35768upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1184
                     /note="ultra-conserved element locus uce-431"
BASE COUNT          282 a          254 c          254 g          394 t
ORIGIN      
        1 aacctttccc gtgcagaagc atggtctata gctgtgctgt ggcatgacaa gccttagccc
       61 aagcctgaca ccaggggcat ttttgccagc attaagtaat tgctctgctt cttagatcag
      121 tgctgaccac cagagacaac aacgtttcct cttctgcttt ttagtcatgg ttcttccaca
      181 taaaatactt atccctgacc aggcttcttt cattcccctt gggttttaag atgcagccat
      241 ggtttcctta ctgggtgatg attgtagatg cagaagtact gatgctttta tgagatagtt
      301 ggtgccattt ttcttagtgg tgaacgcatg ccttctccca gccctgtcta cacctgtatt
      361 ttttacagaa ctctgctgaa ctagcttaat agccaagtgc tgaatcttga attacagtgt
      421 gtttattgca ctgcctaaaa cttgcattat ttccttgtct aacacactct taaaaacttt
      481 tttcttttct ctttcagtct tggtctttgt aatgggcaaa gaaggggtcc atggaggcgg
      541 attgaataag aaggcatact caatggcaaa atacttgaga gactctgggt tctagttgct
      601 aggcagactg ttaagtatta ggggaagatt gctattaaat tttcctggcg gtgagcttta
      661 aaccttacat tctggaaact ttattagcaa tgcagggtga tggggtatga acctgtgtct
      721 cctttgtatc cctttgttgg tggggaaagg tgttactttt ttctttaatt ctgttcattt
      781 ctgttttgtt tccttgtgta ctccagcatt ggttatagtc atgggaaagg aaggtgtcca
      841 tggagggaca ctcaacaaga aagcatatga actggcttta tacctgagga ggtctgacgt
      901 ctgagcagcc tctccccatc cacctagcaa ctgtcttcac caccacccag ttgtgttcag
      961 tgctaccaga ttgtagatgg tagtttgtgt tttttattta cccacttcct aatgtcataa
     1021 ttccagttac cctttgttca tctatatgtt aaccactgta tgtaaccaag cccctatctg
     1081 gcaccacaca gcaccacaca gatgatatgc atgatacctt gggaaactct tgggagggga
     1141 atacgccaag tgtaggcttt gctttgtctt agcagttagt gtga
//
LOCUS       KCLA01002200             290 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35783upu ultra-conserved element locus uce-4769,
            sequence.
ACCESSION   KCLA01002200
VERSION     KCLA01002200.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35783upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>290
                     /note="ultra-conserved element locus uce-4769"
BASE COUNT           73 a           49 c           66 g          102 t
ORIGIN      
        1 cttttggttt gcctttatgt aaatttttta cgtagctatt tttatacact gcaaggcttt
       61 gttctggagg tggctgttaa tcggacgtgt ggtgtaacgg gtttatttca gttgttttta
      121 tgataccttt tgagcaggta cgtgtctaat tctgatcgtt accagtgaag cctctgcttc
      181 gtagcaagta cctagagtgt cagaatgtct taaaagaaaa cgtccaactc cttgttcctt
      241 ccttgaagtc acagtaaaga agaagggtga cagctgtgac aagaataaat
//
LOCUS       KCLA01002201             924 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35799upu ultra-conserved element locus uce-453,
            sequence.
ACCESSION   KCLA01002201
VERSION     KCLA01002201.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35799upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>924
                     /note="ultra-conserved element locus uce-453"
BASE COUNT          234 a          182 c          189 g          319 t
ORIGIN      
        1 tgtgatctag ttcacattct aacatgcaga agttcctaca tcatcaaatg tgagatcttt
       61 gtatctggaa ctaccacagg ttaaacagca gccctaatga agtctgtact agtgtcaggc
      121 atgtctaaaa atccacaaga ctttgagtat acctcgttat agtaggattt cttggttcct
      181 cctttcttta gatcgttagc cctctcttat ttaccatggt gtgtggtgga agtggtcttg
      241 gaaaggaatt tgaattctgt atacagtctg aaagcatatt taaagctgtt gctttcgatt
      301 tttcttttaa ttccttgata ccactgctaa tgtaaaggac atggattgaa gagaggatct
      361 tcttttccta ggcaatgtgt tattgatgag ctggcatttg ccctgtggct ctccctcagg
      421 attgcttaca tctattactc acacgcatcg attggttaat ttgataattc tatcaccaat
      481 cagcttgtgt ctgacctttt gccatggcaa tgatggcaga gtcttcattt ttacatcgca
      541 gacctgctag attgaccttt ctgaggagaa tgtcaagaca tcccttgatc ttaacctgtc
      601 actaaatttg ttagaattac actgtccctt aaccttgatc tattgtattt gtaacggtca
      661 ggggatgcag tttgtgtgga aatattctta aacatgttat gtcattcaaa ggataacacc
      721 ttcataatta aaaaagcttc ccgttaagaa agtgtatatt ctggaacgtt ttcctgttgg
      781 ttttccttcc gtacatctgg gcgattctct ctgcacagaa atcagtgcaa tgtcctgtct
      841 cttggagctt ggtgaaccaa acgcagtttg ttagctatgt tattaagtga gggctgtgct
      901 ggagggggtt tctaggaccc caac
//
LOCUS       KCLA01002202            1047 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35830upu ultra-conserved element locus uce-583,
            sequence.
ACCESSION   KCLA01002202
VERSION     KCLA01002202.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35830upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1047
                     /note="ultra-conserved element locus uce-583"
BASE COUNT          318 a          184 c          203 g          342 t
ORIGIN      
        1 aaatccagaa gagtgaagca aacagggatt tgtgctttca atctgtggtt tgaagctgag
       61 ctgtgtgaag ccctcagaga tgacagtaag tgtccaaaaa tcacagtgct gagatactga
      121 aaggaacttg aaccgcacca aaaaaggcct ttcttttttg ttttggatta aaattggttc
      181 ataaattagg catgcacatc caatgactta aggcgtgcaa tctgtatgtg gaagagtcta
      241 aaaattataa ttttgataaa tagttatgcc ttgttctctc tgccgtgagt tagggcacac
      301 tatcgatctt tgtttcaagc aagtaaccga agtattagta agattttctt tccattttct
      361 tagaactctc caaggtctat agttttcttt gcagaaacag ttgccattaa atatgctgta
      421 tgtcaatgca gcagtgaggt ggttaatttt gactgaatat tatgctatat aaccacttgg
      481 catttaactt gaaaaatgac tttctgcttc acctgtcagc agcccagttc tcatcaaata
      541 agtgagtgag aaaaattttt aaatttcaat ttcctgatgc tattagacac tacttcttcc
      601 atacttaaac agtttagcag tgcatgtaca tgttttggta ttcatgccat gcatcacact
      661 acatgctatt acaatagctt ttttgtttaa agggtaaaga gatgcatgga tctttatctt
      721 ggggttagga aaatgtattg caggaacatg gccaatcagg tttgtgaata acttcgtaac
      781 atagtaccat aaccctgatg cggtgtgagg aatttaaaac actaggtgcc tatgactcca
      841 cggaaagaaa gcattctggc tggagacagc acacacagta atcttgcact acgcttcctc
      901 agaaaaagtg tgtcatttgt ttatttatcc cttttgctgc tagacactta actctgataa
      961 atcatgcaaa atattttctg tatattgtag acgcaaaggc aattaatgca aaatggcgat
     1021 ggtaagtttc ctttgtttct atttcaa
//
LOCUS       KCLA01002203             443 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35845upu ultra-conserved element locus uce-3921,
            sequence.
ACCESSION   KCLA01002203
VERSION     KCLA01002203.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 443)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..443
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35845upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>443
                     /note="ultra-conserved element locus uce-3921"
BASE COUNT          133 a           76 c          143 g           91 t
ORIGIN      
        1 atatttatat atataaaaag aaaagagtag ctgctttgca acactaggtg gcagaggcga
       61 ggtctctgct gctctgagcg ctgtcctata aggcattgct tgtttaagta cagtcgcatt
      121 tagttggagc tgtaggagag agacagagag attctctgtg tttacaggcg gcacaggcta
      181 cggcggggat cttacttggc cccccttctc cagcacttga aggggagagt gcgaggttgg
      241 ttggtaatct gcccaccgca ggtcagcttg cgctgtgact ggattgtcag agctggtaaa
      301 gcagatccca gggggactga agggagacac aaatcccatt ttctttgaaa gaagaggagg
      361 ggaaaaaaaa aagatagaga gagagagaga gaggcgaaga agcagagaaa aaggcagagg
      421 aagcggagcg agtgagagag aag
//
LOCUS       KCLA01002204             601 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35860upu ultra-conserved element locus uce-4765,
            sequence.
ACCESSION   KCLA01002204
VERSION     KCLA01002204.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 601)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..601
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35860upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>601
                     /note="ultra-conserved element locus uce-4765"
BASE COUNT          189 a          130 c          113 g          169 t
ORIGIN      
        1 tctgcaggta attaccaaag cacacttctt tttggccaag aactacagtt ctcagcaatg
       61 tcaacggtct gttacattgc actcagtttt ttctcataga ccacaacgat ggatcagtga
      121 agagttcaag taaaatacat aagctttacc ccattacgtt cgtagcatac actccctgtt
      181 ggactctgac ccggggcagc tggagattta ctctctaaat tgtgaggaac agcgcacaca
      241 acctaccagt caaaaaaaaa tccattgcta gtcatttcag gagcagcatt gttgaataca
      301 aaatgaattt tagtatcctc tactacacac tcagggatgt acttctagag tcactcaaca
      361 gggaatgcag gctgctaagt ttcagtctta cagaatatct gctgactcta agaactgttt
      421 taagagcttg agctgaacct cagaattttt accagagcaa taaaaaaata tatttcagta
      481 taaatgtata gcgtgggcag ctaacatgga tataatcaat ctagcctgct acgctggagt
      541 gaagatggca attatgcacg tatagaaaac aggcactaac ttgtccgttt attcgctctt
      601 c
//
LOCUS       KCLA01002205             920 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35876upu ultra-conserved element locus uce-2082,
            sequence.
ACCESSION   KCLA01002205
VERSION     KCLA01002205.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 920)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 920)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..920
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35876upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>920
                     /note="ultra-conserved element locus uce-2082"
BASE COUNT          293 a          185 c          148 g          294 t
ORIGIN      
        1 tttaccacag taaactcagt caactgttgc tcttgctttt atattcatag tacttaaata
       61 gcgcacttta aaacaaaaaa actccaattg gcttttcata catccaccct ccccaaaaat
      121 aacgcacttg aaaaacccaa atgatatgaa aaggcttcaa ggcctctttt ctccttttca
      181 cagcactttt ttttttattt ctgtttgcag taatctgcct ttcactttct cattgctaca
      241 gaacaaacga ggaggctcag cactttgaaa agggggctca atgtgtaatg ggtccactag
      301 aattaattta gttgcaccaa atccattgag cagtgaggtt tttttctctt ctcaaatcat
      361 tttgagtcgg acgcagcccc cagcctttgt aattctagta aagcacttaa agtgcacagt
      421 aggtgttcat caggaccatc tggtcaaaag caaaacaagc tgctgatttt gcctttgaat
      481 agaatgaagc aagtgtgaat tagtctcttc aattagcact attacaacct gtcaagtgca
      541 tattgtaaaa caggattatt acagtattgg tcaccagtgc aattatttac tctctgcctt
      601 ttcttgcata taaaaatgtc catgtttatc agtttttgat aactgaagat cggttcttaa
      661 atgatatgca cgttcaaact caccaaaacc aaattacagg ttatgaaaca tactctgtca
      721 ggaatatatt aggcttcata ttcaatagag aagtagatga gtgcccttcc cttattgctg
      781 tttctgttgc ataaaaaagg aaagaataat agttatatgc ctctatgaac aggatctctt
      841 caaaacagat gtctacagtc agatattaag atgctttaag cacctaataa agctatcact
      901 tttgaacagg tacataaaag
//
LOCUS       KCLA01002206             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35891upu ultra-conserved element locus uce-6252,
            sequence.
ACCESSION   KCLA01002206
VERSION     KCLA01002206.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35891upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-6252"
BASE COUNT          189 a          216 c          187 g          263 t
ORIGIN      
        1 gagccttgtc cagcctcccg atttgaaaat ggtgtggcag tgacgtgccc attcacgctg
       61 cgattgctgg aacaagcagc tagtttttcg ttaccacttt tctcaccagc tcatcctcct
      121 ttccccagta ggaagtcccc ccaggactca gagctgctgc tgctggtccc ttctgaccct
      181 ggctctcatg tgccaggagc cccagcactg tcatcatgtg atgctttctg gtgtgattat
      241 tctcactcct gtttgcacaa acagatggag ctcaatggat ccttaatagc attctttact
      301 taattaacac gcaattagct taacgaatat tttaacccca ttatgtagct actcatcttt
      361 atctgttgtg ggtgagtcta gtgctcagct ctggcctgtt ataaagacaa gccaaattag
      421 tctggttctt caattatgtc cgagggacct atttatacag ttcttactct ccgcatttat
      481 tcatcatgcc tgtgatggaa gagctggggt ctacggaggt ggaaaatgtc tttttcttca
      541 tttcctccct taaaaataga gattccttta gatatgagac agaggctagg gggagtgtta
      601 ttaaattctc gtgcgtaagt gatgtcctct gctgagttca tcacagcgaa ccctactgct
      661 ctgcccgtga gacaggcttg ctggcaggga ccttcccctc tgtgggtctt ccccgttttc
      721 agcctaaagg gtgtagaggt gcatacttca cagggtggca aatgtctttc ttcatcacgt
      781 tttccatgct cagggtttgt gcctcagcac aagtagtatc tatgcctgac caaccatccc
      841 aagaaaactc tgtga
//
LOCUS       KCLA01002207             328 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35907upu ultra-conserved element locus uce-4316,
            sequence.
ACCESSION   KCLA01002207
VERSION     KCLA01002207.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 328)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 328)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..328
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35907upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>328
                     /note="ultra-conserved element locus uce-4316"
BASE COUNT           88 a           65 c           46 g          129 t
ORIGIN      
        1 tgtttttctt cttgtttccc acagtttttc aacttaaacc ccttctgaaa gcttttctac
       61 tgccatagta acagaagagt gcactttaac ttgctttttt tccatgaagc agatgtcttt
      121 tcttgtgaga attggcatat ttttaccctt agtatgatct ctgcttttat atgcctaatt
      181 aaattttagc ggtcccttgc ttaaataaag atttattagc tgttaaaact gtagcataat
      241 tcttctgcca cctacacacc atcctttaac atatttacaa gcagactggc ttatccacta
      301 taaaaaaggt ggatgattta atgttgtt
//
LOCUS       KCLA01002208             554 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35923upu ultra-conserved element locus uce-5456,
            sequence.
ACCESSION   KCLA01002208
VERSION     KCLA01002208.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 554)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..554
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35923upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>554
                     /note="ultra-conserved element locus uce-5456"
BASE COUNT          181 a          102 c          116 g          155 t
ORIGIN      
        1 aaatgtgatg aaaatgcatt actgtaacct gtagtgtgga aggggatctg ccttttgaaa
       61 taaaaattct atggcttttt cttattactt agtttgaact cacacaacag aactctcaca
      121 ctgaaatatt ttctcatttg aaggaattaa tggctctcca ccagcccttt aacatgtaaa
      181 atgagtaggt tacttgtgtc cagtacatcc aaaaagagcc aggataaaat aaacataagg
      241 agttggatat cttggaaaaa atctgtcatg ggtttgggtt aatcatctcc agaagaaatt
      301 caacttgatg cctgaaatgt aagacttctt ggagaaagca gtaaagcctg aggcagtgtt
      361 gatctgaagg agtgctctcc atgggtcaga gctgctctgc tggcagagtg caaacccagt
      421 tcacaacagc ggtacgctga aaagttgtaa aagactgcag gggccttaca gtgcacgcac
      481 tcaagcttca gttacatagt tctagtggcc cagtttctta ttataaaata aaactaaaaa
      541 ataaaatctg tgcc
//
LOCUS       KCLA01002209             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35939upu ultra-conserved element locus uce-816,
            sequence.
ACCESSION   KCLA01002209
VERSION     KCLA01002209.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35939upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-816"
BASE COUNT          288 a          174 c          164 g          284 t
ORIGIN      
        1 ttcactctgg caacctttca ttaatttagc aactacaagc tcattaagca attgtgctcc
       61 gaagtttcgg tagttgagaa ggcagtggat ttccccaggt tctcaaaacc gaaaaaagcc
      121 cggttactcg ctattcctct ttaaacaaat aaggttagct acccttttgc cattcacaat
      181 ccaacattca tactaaatta atttctccaa aagtaattca aataaaagct ttgccgccgc
      241 tcccctttcc ggagctgcaa gattgaataa ggcatctgaa taaaattgtg tattacagcc
      301 ttctttaata tttaagcatg acattcattg atttgtttct tgttttccgc aaaccttgac
      361 aacatgataa aataaatcat aagaagaaaa tatagtggta acatctttta tggacttcac
      421 atagtcatca atctcaagct gtgagtgaat tatcagtgca gcaaaaagat ctatgtttta
      481 agagctccaa tcgcgcgccc gctcgaggtt tttcacaagc aaactcaagg cgagtgactg
      541 ataagcatca ttattgtttt ctgagagtct agtttatagc gtgttgtgga ggtgttggca
      601 tatatgtttc agaaggaaag gtttgatcaa ttctaagtag acatctacta acatataaaa
      661 aatataacaa gggttcctgc tgagcagtat taaagtacct attgcaccat gtcagcatga
      721 caggccccat gttgtgtttt tgattatatt taatatagaa ttaacctttc ttaatggaac
      781 agattgggcg tgcgacgcgg gcgaaagata tttatcttga ccaaaccaaa gaccatcctt
      841 gtttaggttt taagaaaact tttattttca atttataaaa cttcccatcg taaaagagcc
      901 gatgggaagg
//
LOCUS       KCLA01002210             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35953upu ultra-conserved element locus uce-1879,
            sequence.
ACCESSION   KCLA01002210
VERSION     KCLA01002210.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35953upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-1879"
BASE COUNT          229 a          114 c          155 g          151 t
ORIGIN      
        1 agagctaatg aaatgtcatt tactctaaag ccacccttag gtgaagctcc ccggtgatgc
       61 tgtcccaccg ttggaggaca tcagggcacc gaatgcctgc tgtgattcca cgggcgagaa
      121 gcagcggcag ggacgagcag agcctcgctg gacgggcaga gagcatcccc cctgcgatgc
      181 ttcaaagcag gaaactttgg cagtgctccc tcttccaaac gcaactatgt aaaggtcaca
      241 gaggaggaga tgaaactcgg agttgtaata aggaaggaga aataaaaaat aatgacagaa
      301 ataaattgtc ataagagggg atacagttat gatttattgt gatattctac aaatttggag
      361 gtgattaaaa gccacctaaa attcacatta acaagtcaca taaaaatgga attaaactag
      421 tgggcataat gtggcagggt ataaagaaaa atcatgacag aaataaattg acagaagaat
      481 gatactattc aagttttact ctgccgcgtc acactgacag gagactagta ttttaatttc
      541 agagttgtgg ttgagttttt ggagttcatt aaaggcccac attaagaatc tcataaaagt
      601 gagaagaaat tagtgaccat aatgtggcag aggaaataaa gaaacaata
//
LOCUS       KCLA01002211             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35969upu ultra-conserved element locus uce-1138,
            sequence.
ACCESSION   KCLA01002211
VERSION     KCLA01002211.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35969upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-1138"
BASE COUNT          282 a          183 c          189 g          286 t
ORIGIN      
        1 aaaattaaat ggctaaactt tgcctcaata tttcgtattg ggattttgag tgacttgatg
       61 attcttttca tacagcactt ttcttttctt ttcttgattt aaaattaaga ggtagcagaa
      121 tggaggcagc ccctgctgag cagttgttct tgagctgggc tttaaatgaa gcatgaagaa
      181 tttttaattt gggaagaaga tgatggaaag caagcttgaa ataattcctg agagaggagg
      241 tgggttacag tggaaaacat gaggacaaac aaaatgtttc caagccccct ccagcatcca
      301 cctccacacg ctggggtgcc tgtccctgtt ccacactaca ctgctggagc acgatgactt
      361 tggtgtctgt ctcaggcgat aatgtttgaa agtttcgggt ttggctacta tatgatcgca
      421 gtttcagtag taaagggatt attctgagag gcatacaaat gtgattgtct cccagcagat
      481 ggtgcgcact gcttcacctt tgagaaaagt taattaagcc aagcatattg tgctcataga
      541 gaggaaaatg tagatgaata ttgagcaatc aaactcagtg tctccttttt tcatgccttt
      601 gcaatgggac acagaatccc attgaaaaag aattatgtac agaatcaaat taattcacat
      661 ccaactttac tctcttccca cgttttaaca ggggtgcaca ccaggccctt cagaagtttt
      721 gtccacaatc aatgggccac actgctgtgt ccactaaatt aaatgaatca gtgcagaaaa
      781 atctcttgtg agatattaaa agggtgactg tttaattcaa atccttccgt agtcttttca
      841 cagccccttt tacattgtac agtataaatt attaactaat tccttttatc tcagatcaaa
      901 ttacaaacca gaaacaatta ctcccttgtt aaggagagtg
//
LOCUS       KCLA01002212             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 35985upu ultra-conserved element locus uce-1217,
            sequence.
ACCESSION   KCLA01002212
VERSION     KCLA01002212.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="35985upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-1217"
BASE COUNT          201 a          124 c          144 g          193 t
ORIGIN      
        1 aattacagag tagctgctct ctaaaccccc aaatttagga tgctattcct ggaggaattc
       61 cctccagcat cgggaatatc gagcaaactc ccaaagtaac attcagaatt acgatccgct
      121 ggagctccgg cgtaattctt tgtcgaagaa gttaggggct taaaatgtta aggcttattg
      181 ttattccgag ttgataatct ctgccttgct ttaataattt ttcctcatgc ctggatagcc
      241 cgcgagttgc acaataatca ctcacacagc tttgtaatca atgcccaaag taataggatt
      301 ccgctggcca acggcaatta ataaatttgt gtctttttta aaacactagc aagtcgggcc
      361 tgaaatacga ctgactggct ttcctcattt gcatatttat tgcagtggaa aaattcttgc
      421 cgaatgattg atgtcgagcc tgcctcttga attccaaaca gcacattatt atgaaatgaa
      481 aaatgccggc catacagttg attaaagttg aagacagtgg aatcggtgtt ttttaagatt
      541 gcgggagaat taaaggcata ttttaataga tgttgacaag aagtgaacta acaaaagcaa
      601 agcaaaggat ttgcttgaaa agatttaatc aaacgcgttt cgggttgagg ggggtggtgg
      661 tg
//
LOCUS       KCLA01002213             218 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36000upu ultra-conserved element locus uce-703,
            sequence.
ACCESSION   KCLA01002213
VERSION     KCLA01002213.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 218)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 218)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..218
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36000upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>218
                     /note="ultra-conserved element locus uce-703"
BASE COUNT           60 a           51 c           48 g           59 t
ORIGIN      
        1 agagcccaca atcggcaacg cgggggccgg tgctgttggc actgcacaac attacagccc
       61 accttatata gtgcttgcct ttagaatttc ctttgcactt tgtttactat atattccaat
      121 agtgtaatat taaacaaaaa cagtatgtcc tgtgccagga tgattgatta ctacaccgtg
      181 gcaaggtcac ctcctaggaa caggctgagt gcagtaag
//
LOCUS       KCLA01002214             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36015upu ultra-conserved element locus uce-2196,
            sequence.
ACCESSION   KCLA01002214
VERSION     KCLA01002214.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36015upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-2196"
BASE COUNT          271 a          136 c          143 g          237 t
ORIGIN      
        1 agctgttaat gagtgtttgc tatagaaaag catttctaga taaaaagact atgtgtaact
       61 tctgcctcac tgttctttaa gacatggctg ggaatcctag gaaaaataca ttttcctaac
      121 aaacattttg tcaaaggctt ctaataacct cggagacaat caaaattaac tgacagtgat
      181 ttgttaaatc agaaaaagag gttatttgaa tggtcataat catgcaatta tctcatcttc
      241 actgtatttc aaaaggctgt atctatatcc agtcctatat caggagtgag tagggggagc
      301 tccaatgctg aacctgtgat gtattcataa atcagtactt tcagagcctg tcatgggctc
      361 cataatgagg gtcattattc aggcagagtg tcaaaactac tatcaaagga ccttctcaga
      421 atcacaatca ttctgtttct tgttaaataa gcaatgtagt acacaaaaat ggcaaacaag
      481 aagcaggtca atttgataca gtatgagggc acagagacct ctagagtaat ttaccctctg
      541 ggatttctga tggcttgtga gataaattat atacaccctc agaaaagatt aatggtaata
      601 aaatcccaag aatattttca gtgtccatat gtacatgtgg caacttcagt aacaaagagg
      661 acattttcta aagcagaaca cttaaataaa attattatta gaactgcaag tagctctctg
      721 gaaagctact aaatcttatt acaaagttgg cagcatttag tggcaatacc ttatttcaat
      781 ttgctga
//
LOCUS       KCLA01002215            1140 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36031upu ultra-conserved element locus uce-2488,
            sequence.
ACCESSION   KCLA01002215
VERSION     KCLA01002215.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1140)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1140)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1140
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36031upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1140
                     /note="ultra-conserved element locus uce-2488"
BASE COUNT          339 a          259 c          230 g          312 t
ORIGIN      
        1 gatgtacaat tcagcttgta tggataactc tggaaagaga ttttcttccc tgagtctact
       61 ttcaggtttg ccactattag ttgaggatta gtcagctaac gtggcatcac tgttgacacg
      121 cattttctcc ccacagctaa gccagcttaa ccactttcta cactagaata tgcaatggtt
      181 aaccagatac tttcaaaaaa gaaaactcct tactcaatta aaattctgtt gttagtattg
      241 aatttgaatc catagacaaa ggaacaagca ctcaaacccc ttgtgcctct aaaacatgct
      301 caaatgaaat gcttgaatta tggttaggta aataaatgag cagaagtaac ttggccagtc
      361 ttgcaagtga ccagaatcca ttgaaaactt cacgtatgtt ttcttcttca gcatacacac
      421 accacaagaa ttaaacagaa tggggaactt acagctttag acactcttgg tatctcaata
      481 ccaactgcag cactggcttc tctgtgcgga ttatccaggc tacaccccca tgcagctgcc
      541 agtccctggg gctgtaattc agcgatcctg ctctcactct atccatcaca tttacacaaa
      601 tccccaaggt ggactgcctt ctaaatgtct ttaccttgtg cattatcctg gggcttaaca
      661 atccaatatt ggtgcagcca aggataatta ctctccattg atgataaaac accctgaatc
      721 ctgtcaggca tggcaatttg catcttacag agctgaggat caataggtac aacaaaggag
      781 tgaaacctga ttagatagtg ctgcctctca atggaaaacg aagagctggt tgttttgcag
      841 ggttgaagtt ctggttaaaa gggaaatgga ggtttcccat ttcaacacag tccccaaacc
      901 tgctgttcgt ctagaaactg ctgcagcgga tgtggacttg aggtgaaagt aggggaacat
      961 ccatccaggt cttacagcat cctggtaaag gagtagtagt taacttgtgc cagcgtggct
     1021 tgtgcagttt cagtgtaacc caagagaata caccaggcat aaactgcctg gagcaacaag
     1081 aggttctgct tttccccagt tttatagatt cacactatga agaggtcaac aacacacctg
//
LOCUS       KCLA01002216             765 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36047upu ultra-conserved element locus uce-1446,
            sequence.
ACCESSION   KCLA01002216
VERSION     KCLA01002216.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 765)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..765
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>765
                     /note="ultra-conserved element locus uce-1446"
BASE COUNT          215 a          168 c          127 g          255 t
ORIGIN      
        1 cttttgaggt cccttttgat ccctaatgat tctgtgactt catatcattc taaatcttat
       61 gcactgcagg ggaagaagac cctgaagaga aacagatagc agaactgccc ataaaattat
      121 agggagtgaa tctgagagaa aatgtcatga attttaacca cgggattcgc agcttctaaa
      181 cagagttcac cttcctgtgc tctggttcct tagtgaaatt attcccatgt ggatcttcac
      241 attattttct tagcttctca acactgtatt tctgcacagt tttgtatctg ctagccctag
      301 catttacagc ctacgaaaac ctcataaatc tacttcattt ttctaataag acatgaaagt
      361 ccttaattgg ccttaatgaa atgcacttaa agggcaataa acgtgtttaa gcccctcttt
      421 cagggtgagc tacagtactc tcactctgct ctgttttagc ctttgtggta attaatcact
      481 tattcatatg tggcacatca gtaacaagat caagcaacta ctgcacaatt gcatgataat
      541 aagctgctca tatatgtgtc aagatttagc aatccttttt aaagcctaat ttaaactcat
      601 tttacaacta agcaggctgc ttctctgaag tatttctacc cagtatcttt ttacgtattt
      661 ctgctgaaat gccatctttt cactttggtt atagagctcc acttgcctta aatctcctcc
      721 ttgcgtccga gtgaattaca actgtgtaag agccttacca ctggg
//
LOCUS       KCLA01002217             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36063upu ultra-conserved element locus uce-4652,
            sequence.
ACCESSION   KCLA01002217
VERSION     KCLA01002217.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-4652"
BASE COUNT          214 a          114 c          115 g          184 t
ORIGIN      
        1 gggattaagt gccttcttgg cctctccttg gtttgggtgc aaacatgaaa gagacagtag
       61 gaagatgaca aaaatatctt gtgatcctta cgcagtcaca taaaaataag ctgctctaac
      121 tggaatgtca catcagaaac cagcagattt ccatctaaat tattttgtca acagcatggt
      181 gggatccttg ctaaccttat ttggcaccag tgaataatta gatacacagg ggtgtgactt
      241 caattgaagg tgttggcatt gtagcactct gtgaaaatat taactatgat gttaactcca
      301 attttctctt ttttaattaa atgcacatgg tactaatgag gtaacctact gttccttgat
      361 agcactaatt agctaagagg agagtacact ctcacactgc aatttaaacc taaaaataag
      421 gttgaaatat gctaattgta ggcaatttaa aacagtacaa gttgtagaac tagtcataat
      481 aagggaaatg gactgcttta cagctctgca gctgtaactt cagttaaaat caaaccacgc
      541 cacacaattt tagaatgatt tgtcaaagca tctaccaacc tcttcaaaaa ctgttactta
      601 attcacagga tggaacataa atggaaa
//
LOCUS       KCLA01002218             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36079upu ultra-conserved element locus uce-899,
            sequence.
ACCESSION   KCLA01002218
VERSION     KCLA01002218.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36079upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-899"
BASE COUNT          271 a          146 c          154 g          218 t
ORIGIN      
        1 gccctcccat cctggtgcag gaaagcagca caaccatgat tcattttact actgccttgt
       61 catatgctga agttgcctga tgtgcagcag aactcacata gctctgggta agatgaactg
      121 cctgacagca gcaacttgag ggattcctat cacgctctct cggaatctaa caaaacaaca
      181 caaatagacc ttctgcataa tgactaaaaa actggtaatg gccatcttta gtaacatagc
      241 aacagccaaa cccttgaaaa gaggaagttt tcgttgagaa agcatttcat tttaaacatt
      301 gaaatttggt ataatgtaga gtataaagta agttttgaaa ggaagctgat gattaagaag
      361 aaatgcagtg ggcatttaat aaatggagga accgcaagat aattaactgg catgcataaa
      421 gattcatgct ttataccaaa attttaattt tgcacataaa tgtgcctgat gtaggcagca
      481 tttaatcacc tagctgacag gagtaactac tttcatttaa ccttgactga agatcatgaa
      541 ttctaacagg tttaattgga tacatcattt aacagaatga acagagcaaa tttttctcaa
      601 ttcataggtt ctgattgaca tgcaccagca ataaggcgtt gcacaattaa agctgatctg
      661 tattcctggc ctgggcagca attgccatag tgatgtgaca ctgtttgatc actgtggcac
      721 tgaaactata ctgaattccc ccttgttttg aaaagggcaa tgctttaaaa aaaaagaaag
      781 agaaaaaga
//
LOCUS       KCLA01002219            1095 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36093upu ultra-conserved element locus uce-4486,
            sequence.
ACCESSION   KCLA01002219
VERSION     KCLA01002219.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1095)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36093upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1095
                     /note="ultra-conserved element locus uce-4486"
BASE COUNT          288 a          229 c          231 g          347 t
ORIGIN      
        1 tataatatgc ctgagtaatt ttgctacacc aacacaaaca attacaactt tatgaaaacg
       61 cttctgcctg tgattagtgc aaagtgggct catttcccac tctgcccacc aggcccctaa
      121 aaaaaatgcc agtgcttttt ctttgtgaaa agtagcagtg gctttttttt tccttatatg
      181 tttctgtaga cagttcttga gttcttgaac gattaagtag aattaatgtc tcttgaatgt
      241 tgaggcactg gaaaaaaatc gaatcctctg tcatagggaa tgtggtgcag aaccgctact
      301 atggacctct ggagggagag acgggagttg tttcggcagg cttgggtttc tctctgttta
      361 tgtgaaacgg acattggcat atcttgcctg gacttctcct gtggggttca tatggtaggc
      421 agggtgggga atagttgtct aagccatacc aaggtcagcc tgctatagct gacagtttct
      481 gtctctgtac aaagaaaaga atcaatactt ttggactacg gctgtgccct cagtgtaaaa
      541 caacaaacat gcagcgtctg acatgtttct aggtgatttg tggcagaacc tcttgtctga
      601 tctgtatcca ggagctgctg tgttactgct ctgtgctttt cttctttctc ttgccccccc
      661 cagctctgtg atgtttaata ctttactcag gtacagaggc gtgtgttcta ccctacagct
      721 acttgtcact caataaatca cacctacaag cacagtctgc acagagtgat gtgggcttta
      781 acaaaggatc agagggacaa agtgcaggca agatactgta attataacaa aaataaaaca
      841 tgcagtggat tgtggcaaag acatgggctc ccaggcacta ataaaatgtt attagaatcc
      901 tggttttgtt tcagtccttc agcttccatt ttaaatgttt tccatcttag atttctgttt
      961 atcatctttc caatctaaac cacaaatgtc agcgagttga cctatattaa atacatacct
     1021 ggtcttggat aacagaatct ccctgtgtcc tactttgtga gtcagtgtca cctgtaatca
     1081 gtgcctgtat ttatt
//
LOCUS       KCLA01002220             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36123upu ultra-conserved element locus uce-1508,
            sequence.
ACCESSION   KCLA01002220
VERSION     KCLA01002220.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36123upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-1508"
BASE COUNT          160 a           98 c          107 g          155 t
ORIGIN      
        1 tgcaccaagg aagacgggca taccggtccc tttctgtctg cagtctaaaa aaacaacaat
       61 aaaacccaaa ccaaactaaa atcctgagag cagcgccacg ctgaactaat ctgacagctt
      121 cttccttccc tgaaatgttt taagcagcaa gacaatgtcc tatgtttttt ggcaatcggt
      181 ggatcagata gaagagtcga gcaatacaac aaggatgtgt aatctgacat gattagacaa
      241 ggctctttag gaacagaaca ttcataattg agacaaagaa agagtattaa taacactttc
      301 ctaacacggc agttagccat tttatatttc ctttctttaa tcttagtgtt tttcaacaaa
      361 tcatgggatt taatagcgtg ttttggcaga ttagaggatt tatggcccag atgttttttg
      421 ttctaaaaat ggattagggt gtaaagtttg ctggaatcca tggaacatgt tgaggcaagc
      481 cggtcatttt gtgtgtgatt agtgcctgcc ttctgtctca
//
LOCUS       KCLA01002221             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36139upu ultra-conserved element locus uce-7566,
            sequence.
ACCESSION   KCLA01002221
VERSION     KCLA01002221.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36139upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-7566"
BASE COUNT           87 a           68 c           59 g           85 t
ORIGIN      
        1 aatcacagtt tgagagaatt cccccctact cctcccgttg gaaagaaaga cagaagacat
       61 tcttgacatt ctttgtagag aaaaggggtt aaatgtctga atttgggggt caccatgtta
      121 tacaaattgc aatctaatcg tttttacaag aacacacgtg tgctaagaaa aggagccgtg
      181 gacaagaaag aaaagggaac agacaacatt ttttgtctat ctcctttttt tttcctcccc
      241 ccaaggtttt ggactattgt catgtcctgt ctctctcccc tgctcacccc cgagaagga
//
LOCUS       KCLA01002222             413 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36155upu ultra-conserved element locus uce-3931,
            sequence.
ACCESSION   KCLA01002222
VERSION     KCLA01002222.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 413)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..413
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>413
                     /note="ultra-conserved element locus uce-3931"
BASE COUNT          109 a          106 c           86 g          112 t
ORIGIN      
        1 tgtgctcctc tctgaaacct cagcgagagc ctccctagtg ttgtgctgcc gctgctctgt
       61 cttctagtgc ttcgctgaga cacgtaagag aggccaaacg cctaatgggg gtgagtgtca
      121 gcacaataca aattacccca cggcaagcct gatgcatggc tcgggatctg aaagagcaat
      181 gtccagcact gcttgtgatt atggatcaca tcacaatcta atagcaattt ttatttaatc
      241 aatagtttcc atgctgaaca gacagcccgt tacagagaat cgacaagcag gtactgatag
      301 cgacaaggct tgttattaat ctttaccctg acaacacatc aggcaaacta ctgtaaaaaa
      361 gcccggccca gatgcgtttg aaagtctctc cttttctctt tcttctttcc ttc
//
LOCUS       KCLA01002223             509 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36171upu ultra-conserved element locus uce-3032,
            sequence.
ACCESSION   KCLA01002223
VERSION     KCLA01002223.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 509)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..509
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36171upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>509
                     /note="ultra-conserved element locus uce-3032"
BASE COUNT          158 a           89 c           83 g          179 t
ORIGIN      
        1 cagaaatcct cactatagat tgctatccag tttcttctgc cttttccagc aaatgcttct
       61 catctttgac tttgaaaccc tacagtttaa accaggttct tgtttcagtg gactaatccc
      121 ctttcataaa tcatgttcaa gtgctgaaat aatttgcaca tcgtttaaag actatttgct
      181 ttgaaacatt cacctcaagc ccttttgtat atcctttctc tctaaagatt tgtagtattt
      241 gttttgttct ctgaggtata aaagacctgg gtaaacttta ttcctggtgt ttcaagatta
      301 gtgaaataaa atgcatattt attcaactgg gactgaaagg agctttagta aagacgatca
      361 tacatagggc ccatgggaac gttgtaatac aaaatgtctg tcttaaaatc tctttaggtt
      421 tgttcaaaac actatggaag gacttaagtt taaaggaaaa aaaagtattg ttacaaatcc
      481 atatttcttt gttctaaaat agagagaga
//
LOCUS       KCLA01002224             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36187upu ultra-conserved element locus uce-5097,
            sequence.
ACCESSION   KCLA01002224
VERSION     KCLA01002224.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-5097"
BASE COUNT          239 a          144 c          186 g          230 t
ORIGIN      
        1 tctttgcttt tacagtaatt gtgagaacat aaattcagga acatgtgctt ggtcagctgc
       61 cccatgccct cctaagcagt gaatttacag cacacacatg ctctgaggtt tagggaatct
      121 aaactctttt cctgataaat ctaattcgta tagattgaca ctccaaacac cgttttctgg
      181 gtctccagag gaaatgtatg gctggctttt ggtttagtaa ctcacagaga ttaggttttg
      241 cataatgtaa atggggggcg ggtgatgctt tgtaatgctg tgaatgcaat tagtgagata
      301 aatacagagc taaattcatt tttgctgaaa agcagcaatc tgattgctat gcaaaaagca
      361 cctttatttg caacactagc agttagtaat gcggttagca atgcacagag tggcattttg
      421 atttgcagct ctaaagaatt ctgggatgaa taaaacatgg gagagaacca ctgccagact
      481 agatgaggtc tactctgcta aacaaaagtt atgacctggg atgttccact cccaaaggaa
      541 atgatgtcaa taccagaaaa ggttaaatag cccttgtaat aactttcagt accagaggtc
      601 cccttcaaat gcaggttgag gataatgatc tgttcacgtg tcccatcatc ctgcagcagg
      661 tgtgattaga acagagctat ggaaaatgcc aaactacatg ctttgtgcca agacatttga
      721 atcagtgtca cagttgattt tgaaggagga aaagctgttg gaagggagaa caggctgttt
      781 tggctgttct gatgtgtgg
//
LOCUS       KCLA01002225            1267 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36202upu ultra-conserved element locus uce-558,
            sequence.
ACCESSION   KCLA01002225
VERSION     KCLA01002225.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1267)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1267)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1267
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1267
                     /note="ultra-conserved element locus uce-558"
BASE COUNT          423 a          222 c          207 g          415 t
ORIGIN      
        1 tattttccat gcaatataat cctgtgtctt gaaagagcag ctacttgtgt agcatgccca
       61 gaaatattgc agcctttgtt tctgtatttt caaaagctaa tcttacctac atttgagacc
      121 ctcaaaaaca cccagtgcaa gttactgtgt gacaagtgtt ccaaatacga caagttatat
      181 tatctgttaa gaaaaaacag aatctacaac tcttcatacc atctaatatc ctttagcatt
      241 tcaagtaatt agcagcttat tccaaaaaca tttgaatagt taatagattt gatacctatg
      301 gttaatcctc attaaaatta cgattacatg atataattac atgtaaataa gaaaaatgaa
      361 ttcaataaaa ccttaccctt gtcagtgttg ggcactatgt tgggaatcat acagtatgta
      421 caatcggatt tattctgcta agataaaaat attggtgaag atctaaaaat gacgaacagt
      481 gccttttaaa ttaatgtctt attagttgag tgaagtacac tgacaaagaa taatttatgc
      541 ttattcaaac tgctctcgac atcttcaggt gtttccaaat gagctcacag aagagtgatt
      601 aaatgcatct gataacaagc cacacattgc tgaaattact taccgcctca ttttatgatt
      661 aattaaacat gtagattaaa gttgcaaaag aatttagatt aatgagcaag ttaagtcttg
      721 ctgatataag tgaattggga attggatgct ctgtggaact ttataaacat gcattttata
      781 atgagtaaga caaggctaca tgttgaatcc tggccacaag ggcctttgac gatgcagtct
      841 tttttaacat ggtttgacag ctttcaaata acattctact atagacttta aactttgtgc
      901 attgctgtaa aacatgagac tatataagtc atgtattagg agcgtgatta tttcaaagct
      961 ctccaaggta atgaccccct gtagcagcag ctgttcagaa aaattacaag ctcgattgtt
     1021 atcttaatca gagagagttt agtagttaaa agcagttatg caactagtaa aattatatga
     1081 cactccatca gtagccttat tgcatccttc attgttttgt tcctctccaa ttcccctgct
     1141 caaaaacctt ggtcttattg gtaaaacagg gtgctcagtc gtccataaaa attcaaagcc
     1201 atttattaag tctgtttcct gtgcaaggca agataacctt taaatttatg atgattctta
     1261 tcagctc
//
LOCUS       KCLA01002226             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36217upu ultra-conserved element locus uce-6098,
            sequence.
ACCESSION   KCLA01002226
VERSION     KCLA01002226.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-6098"
BASE COUNT          145 a          149 c          109 g          134 t
ORIGIN      
        1 gggagcgagg aacaaaacaa cccttcaaat aaacaaacaa acaaaaatct cgcgcacgat
       61 cacaataaag tgaaattcct ctccacacac cctcaacttt agctctgtct gctgcctggg
      121 gggttttaat cttgcaaaga gaaagggggg ctccctgcgc aaaattacgc cttctcctct
      181 catttgttag ctgattccat caaaaagttc gctatttata ggctacacac ccgaacctgg
      241 agtaatacaa accctcccgt gttgttcccc acacaaagtg gccggtcctg aagcatctga
      301 tcgggtttgt gtgtgtgtgc gtgagtgaga gagacacaca gagagcgctg ccatcaaaaa
      361 gggggaagaa gagctcaagc tgagagactt aaagagctgc tctgccacca gccatgtgag
      421 tacctaacaa tgatcacctt ttgcacagat ggtcagcgat caggcacaga cactttctgt
      481 ccttttcttc ctccctcccc tttcttattt tttttctcct gtctcactcc ctcccac
//
LOCUS       KCLA01002227             801 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36232upu ultra-conserved element locus uce-7131,
            sequence.
ACCESSION   KCLA01002227
VERSION     KCLA01002227.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 801)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..801
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36232upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>801
                     /note="ultra-conserved element locus uce-7131"
BASE COUNT          181 a          179 c          169 g          272 t
ORIGIN      
        1 aatgaagcat tgccctgtaa gaggctaact ggtgaattgc ttcaaggggt ctgtgtgagg
       61 ctggactgta tcacggtctt gcagcagatt cacagacttg aaggctgtct ccctatacct
      121 tcacctaact gcagtgctgg tttagtgtcg tctcgagatt tagtttgatc ttacggtttc
      181 cactttacat tcatgagtgc tgagctgttg actgtcatga catgtgactt gagtggtcgg
      241 agttgtgtga ctctgaacca gtcggtacag ggggaaacag tatttcgtac gagtctccgt
      301 attccagttt gtaatctgtt tatctctttt ttcccccttt tcgtctgcag atttacatga
      361 atgctgtatg gcatggctgg gccattccta tgttcttatt tttagcaatt ttgaggttgt
      421 ccctaaatta cctcatagcc aggtaagtcc ttaagtattt gattactctc ttgtaatgct
      481 gtctcactgt tcttgactga gttaagttta accgagtgac atccaagctc gaatatcttg
      541 gtaataaacc ttgacttttg cactaattcc ttaaggaatt ctctgtttcc tgtgactgag
      601 ttattggaaa cgatgcttca tgttcccaaa caaatccccc gacaattaca actctgaact
      661 aaaacatttc tgtagtgttc agagcagctg gaggacagca ccttaaatac tgatccctgc
      721 tccttttcct tggagggaat cctcacctag gcctaaaatt gcagctttgc ctttttcagt
      781 tccctttggc aggctccatc c
//
LOCUS       KCLA01002228            1110 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36247upu ultra-conserved element locus uce-3224,
            sequence.
ACCESSION   KCLA01002228
VERSION     KCLA01002228.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36247upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1110
                     /note="ultra-conserved element locus uce-3224"
BASE COUNT          316 a          212 c          214 g          368 t
ORIGIN      
        1 gaccagtgac tttctaaatt aaactgcttt gctagctgct ctgcagaacg agcactcaag
       61 ttgtgcaaca tgttgaacta ctgaaatgag ccttgtgagg atagcatgca gaatgcatct
      121 catgactcag gcttgggtat tcagcttaca gagatggata aatgagccga gctgtttggg
      181 gtgtctttca tacttgaaca cttacatatc tggttgaaaa tggaacactt ttgtgtttca
      241 aagtaatact tgttttgtga tgaatttcct taaaatcaac agcagctgat tgagggtaac
      301 agctcttcct gataggaacg tcagtgaacg atcagtcatg agcacattga caggccaagg
      361 cttcaactga taactttagt ttagtttcac ggtatttata tgtcgacagt tttaaaaatg
      421 tacttagctt acctagctgc catttttaat attttccagt cttcttgaaa aaaagttatt
      481 gatttgacct cctacctaaa ataatgttct ttagatctaa agctggttag acacattatc
      541 tgactgagtt tactgaagca aaaacattcc ataaccttaa ccttttccct gaccccctgc
      601 ttttaacaac tgccgacata gttttatgct gttatgtgac catgctcgga tgaaatctgt
      661 caaacagctc cttgagttat taggctgtct gagtctgacc tttctgcaat caaagatata
      721 tgacttaagg gctcagattt gccatggcaa ccggtccaat ttgctgccgt gagaaaaggt
      781 ctaattgttg cagaaattta atgatctaga gcgacatcag ggctgtgaga ttttatgaac
      841 tgtttacacc gtaattttca ttttgttaat gcagtctttt tttgtaaccc attcatggct
      901 agagcataag tggctgtttt tatttaaaat agcagagcac gctataaaag atggcttggt
      961 ggaaatatgc cactatttgg gaatgtatta acacacagtc atacataatt tcagtcaccc
     1021 ctgcttactt ttcattcttt taaaaatatt ttaactgctt agacctttgc cagacttggc
     1081 atttttgtcg gcacaaaagg gactttacgc
//
LOCUS       KCLA01002229             880 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36263upu ultra-conserved element locus uce-4584,
            sequence.
ACCESSION   KCLA01002229
VERSION     KCLA01002229.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 880)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..880
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36263upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>880
                     /note="ultra-conserved element locus uce-4584"
BASE COUNT          280 a          180 c          167 g          253 t
ORIGIN      
        1 cccacgtcca cttccatgca ccctcccacc accaggtacc tgaatcaagt gttaagggca
       61 aggctgcaag gtgctaaata cctggggctt aactaatgcc ctcagggata acaatagctg
      121 cctcattgac agaagggaac tctgtgaagc tcagccgtgg taaaaggggt aatatattaa
      181 catttcagta tgtttattaa atacttgtca gtgttatttt ttagaaggct atcctagcat
      241 tgctatggct ttgcatgcgt ttagttacca ttttaaacaa gtacgaaacg gcggcatgtg
      301 gtacgggaga tggtctaagc atcccagagc aatatacgtg tgatatatga catccttcta
      361 taaatcctaa atttacacag tatgctaatg cttgattcca taatttcttt taaaaatgat
      421 tataccctgc tgctaagagc aaaggcatac taaaatcagt tttctatgct tttccaacaa
      481 tgaaatgcaa gccggcacac cacataaccg atacttacca tatgttagaa gataatccag
      541 gaggcttcag acagtgacat gatttgctta aataaaaatc cccttttata agtcagtaac
      601 aacagcccgc catttttact cttcctttag tgtcctgctc cagaaacact gatattatac
      661 ctaaataatt tgattgtaaa tcaggccagt ctatttagat tgcctttaat gtgcaaggac
      721 ttagttgcta agctggagga aaaagctgca attaaatcat tgggttgttc gaagaaattc
      781 tcaagaccag aaaaaattca ccagatcaaa aggagcctaa agagcagctt caagatttct
      841 ctggtctatt ggagacgaga tgaaacagtc caatttggta
//
LOCUS       KCLA01002230             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36279upu ultra-conserved element locus uce-2261,
            sequence.
ACCESSION   KCLA01002230
VERSION     KCLA01002230.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36279upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-2261"
BASE COUNT          265 a          147 c          188 g          217 t
ORIGIN      
        1 agtcctgcaa aatgcatttg atagtgtgtg tctgcaaaag gtaagccagg ctaaaagaag
       61 aatcggactt tgccaggtgg ctacaaaatt tattatttaa cttcagcaga tggagccacc
      121 ttaagaaagg tccaaggagt gagatggaaa ccaaatagtc aaaggaagtt ggggatgtgg
      181 gtgtcaggtt gtcagtaatc tgacagctat ggtaactacc ctctaatcca gcggctccag
      241 ccacgctctt gcctgacact gcaaggactg actgacagct gaagagcggg cactttttac
      301 aggcaaaagt gacatccact ctattaaggc tgacaagcac aaagcagaga tttgccctgg
      361 atggtttggt actgaagcct agtaaagggg ttatttgaaa ggtcttagag aaagtgtcag
      421 actcaaactc agatgataac aaaactgtaa tgatagcact ggacaatgaa atgctatgat
      481 tgcccataca ggccagcaag attacatgtg gatattgagc ttcagaagcc cgtttacagc
      541 agcagatttt caaaagcaaa cgtgctacag ctctaagacc actctttgtc tgaatcctaa
      601 agatattttt ttacagtgtg taataatcca ctcgtgtcct tgttactttt actgtggtgt
      661 ctaaagaaaa aattaacagt aggagcaatt aatgcagaca cccttagaag atatcagtga
      721 tgaaatagtg ttatgctcag tctgtcttgt aggttaaaac agatgtttag tacagaaaat
      781 agagtgaaaa tggaagtagc tgttcagttc aaatttt
//
LOCUS       KCLA01002231             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36295upu ultra-conserved element locus uce-3509,
            sequence.
ACCESSION   KCLA01002231
VERSION     KCLA01002231.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36295upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-3509"
BASE COUNT          248 a          141 c          118 g          183 t
ORIGIN      
        1 aacctagcta tctggagatc tgtttacttg caatgataca tcacgtctga gttttactaa
       61 tacataaact acattttcat tccctaatgc tacaaaataa tttaagtgtt ggagaaatta
      121 tagtttgata ttgtcaatta attttacaca tcaatccaca ttccttcaaa aatgtacatg
      181 gatcttgtcc atttttaagg aagcctgttc acaaaacaaa ggtgttagaa tgttttcata
      241 gcaactcaga agcattactt tcattagtac cctatttcct ctgaacgcat catatgtagt
      301 tccctgctgc aactctccat gctttgatag ccctgtacaa tgctgcttga actccatgcc
      361 acaaggcaac actgtaaaga agctgaaagc aaagagaaga ctgaaagaga atcatcatgt
      421 ctgaaagcca aattgcccca aaaattgtct gtagtcaatc aaaggaggat actgacagca
      481 tctgctagag gaacacacta acacctgtgc tctacagagg gatactagca agaaacataa
      541 cgtttacctg catacaaagt tacccaggag aatgaaggaa tcagcagcat aacaatgctg
      601 atgataatta cactcactga aatgacacat gaagtttaaa tttaaaaagc aatgacaaac
      661 agaagggaga agagaccaaa tgggccacca
//
LOCUS       KCLA01002232             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36311upu ultra-conserved element locus uce-3716,
            sequence.
ACCESSION   KCLA01002232
VERSION     KCLA01002232.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36311upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-3716"
BASE COUNT          210 a          171 c          225 g          192 t
ORIGIN      
        1 tgaaagctgt tccttggtca tgcgtgcaaa ggctatgaga tggggcagag taggacctgg
       61 gggaaggcag agagtgaaga tgttgaaggg ggtggggaag atgcagaaaa gcggttgcag
      121 ggcagaggaa gggaggatgg gtttggttgc attcggaggg accacgaggg aaggctgccc
      181 gagcacacgc acaccccctc tgctccacac cctcaccccc cagagagaaa aaattcatca
      241 cgccgatttg ttcatggtct ggcagtcaag tgataaaatt atcagatgag ggtcccgttc
      301 tcctttcccg cagtcacttt tgccaagtgc accccgtctg aaataatgaa gcagatttga
      361 ttaaattttc gctggctgaa gcagccacgc taatttggag atgggcttat tagtttaatg
      421 accgatccga ataatcagaa ttcattagca ttagtgccac tattgtcagc tcaacattag
      481 ccctgggctg cagtacacaa agatgccgag ttatatattt atatagagag aggctgtgtt
      541 tgtatacagt gaaagagagg gagagcgacg gaacagctac acacgtgcat ttctcctcca
      601 gactcctgca ccttgctgca catccttgtg cattagtaag ctcctacagg aagaatttaa
      661 ctataatggg gctttgtgag acagcgccag tcttggtcag ccagggggta tccagcctgg
      721 cactaggaca gaggaagttt ggggttcatt ttgcagctaa aggcagttgg ggttctcttc
      781 ccagaagatg ctgttgac
//
LOCUS       KCLA01002233            1065 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36327upu ultra-conserved element locus uce-1556,
            sequence.
ACCESSION   KCLA01002233
VERSION     KCLA01002233.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1065)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1065
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36327upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1065
                     /note="ultra-conserved element locus uce-1556"
BASE COUNT          333 a          213 c          195 g          324 t
ORIGIN      
        1 gggctgttct gaattgtgtt tacagaataa agggaatagc ttgtcttagg ttctgtagct
       61 gtaactgtac agagagagga ggaaacaaat caataagttc gatgtaagca agtcagagca
      121 acctttaaaa taataacaga aatcaattta tttcacaaat gtctgtattt cctaatgccg
      181 ttgttctgtg ctttctgctg tcattgctca taacatttga gaaaacttct ttcttagtca
      241 tttaggtaca gcagaaatta tcgtgtaaca gccatgtgaa aagattatac attcacctca
      301 gtgaaaatct actgaaaaaa ccttgtccta tggggtaaag agtgtttagg aggcggggaa
      361 aggcagagaa gacaagttat aaatatggac agaaaagcct tactttattg ctatatacaa
      421 tgaaaagtaa ttacagagaa aaatgaaagc tgcttcttgc tgttagcagg aagaataagg
      481 gaattctgtt cctttttaaa gcttgaagtc cattttgata taattggttc cagaattatt
      541 tatgacatta attgctgcat tatcgactgc ctgtcagttc ttctggcagt tagtccatct
      601 ttcttaccac agaaagccag ctcagcccaa actagactga caagctaatt atacccatct
      661 tccccttcaa tgacaaatgc tgctcattgg aaacctttct agaaataagc tttcattctt
      721 ttcccttttt cctgagccag acacagccaa tatctcaagg tacagatcac agctgaaact
      781 ctgctcacag ggctattagc tctgaacatc tcacttgagc caaaaaacct aagcatctta
      841 tgttatcaaa ctgtatgtca ttccttgatc ctagttttca gtggatgtgc actgggccat
      901 agctgtcact caaagcagtg gcagacagag caaacctgac tacattagct gggtccttcc
      961 taacagctga aacagtcctc tgacagccat tccaaatctc agaaggaaga ctttgtgttt
     1021 ctctcatgta aacttctaga ataaatattt tacaacttct gtttc
//
LOCUS       KCLA01002234             910 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36343upu ultra-conserved element locus uce-6558,
            sequence.
ACCESSION   KCLA01002234
VERSION     KCLA01002234.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 910)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..910
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36343upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>910
                     /note="ultra-conserved element locus uce-6558"
BASE COUNT          295 a          175 c          160 g          280 t
ORIGIN      
        1 agagtgccca cccaaagaag agggctagga gagtctaact tacaacaatg tagattccct
       61 ctagattccc ctctttaact ggcctgacct tttctaaaag ggttacatca ttcacagacc
      121 tcagctatta ccccttgaac actattttct ttgctctgga aacctcactg aaaaaattcc
      181 ttgacaaacc ttgttttgta agccaaccac gagcaggact ggaccactta caagtttctg
      241 ccaagaggaa acagggaagt catactcctc tagctattat ttcttttaat agattcagtc
      301 tgggaaggag ccagagatcc taaacaaaga tatggtgtaa agaggtggac aagacattaa
      361 agaaataaaa tccatatcag ggcaataata gtcataaagc aataaagtgg atgtataata
      421 gttcctggac ttttaatttg tgactaattt gttgcacaat gaggttgcaa ttttctaatt
      481 gtgattgcca ttttaatttt actcatggct gtgcaactaa caatgtatag tctagtaatt
      541 aaaattaatt gtaccttcac ctgcatattt ctattaggct gttaaatcta gttggtaggc
      601 tcaatggttt tgttctgtga gagatgctga attcatttca gcgagcccaa ttatgttaca
      661 ctctaattcc tgtatgaaaa acaagcattt tactttgata tgaagagttg ctacaatctc
      721 attgttaaaa ttgcatactc aacactgaaa tagaggctga caggagatgc acgtaagttt
      781 tcttctttct aacagcagcc tgcttgtggg gtacctctta caaaactagc aattacaatc
      841 tctaggaata aaaccaatga aaactcaact ggatagtcac cattcactta atgtaattaa
      901 caattaactg
//
LOCUS       KCLA01002235             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36359upu ultra-conserved element locus uce-7208,
            sequence.
ACCESSION   KCLA01002235
VERSION     KCLA01002235.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36359upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-7208"
BASE COUNT          266 a          167 c          157 g          255 t
ORIGIN      
        1 atgtcatttc catagttata aaacaactcg ggaaaatgta ctgtaacaat gtgatgtatg
       61 ctaagattga ttaccccaaa aatcctttca agaggaaaaa gagagatggt tacagggaaa
      121 ggctgtttct atacagactt cacatcccac agaaaaaaat aacccttata ttcagttgtt
      181 acgtggggtg gtcattccat ttgtgtattc attatgtgca ttaaacagtt gaacatgaat
      241 agtttaattt gttctgctga gagagagaca actatcagga atggctataa aagtcatata
      301 atgaaataag aatactagaa aatccaagga ttttagtaca gtccattatt cattcaatcc
      361 ctggcagcct ttatgattac aaatcacttg attgactaac tagacatttt caaagtgaat
      421 tatgaatcag gttcattttt cctggttgag agttggtaca cgctgtaact ctcccgcttt
      481 gtgatatatc aagttcttgt aacagtaata agagatataa tcaactcttt attctgggac
      541 aaataaattg ccttttcaaa aatgaaatgt ggtctctaac attttaacat cgtacaacgt
      601 aattccttcc ctgtagcctc agactgagac ctgctgggat gacacagctc ctgagccttt
      661 ggttttgctg caattatttt cagaccccca caccctcaat ggaaatgcgg tgatggggct
      721 cagaacagaa agtggtccct ttcctcactg aaaacgagcc tcagacacct aaaccacgag
      781 caacaatttg cccttttgtg cctggctctg atctcagctt gggaatgctg aacagttcta
      841 aagct
//
LOCUS       KCLA01002236             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36373upu ultra-conserved element locus uce-7449,
            sequence.
ACCESSION   KCLA01002236
VERSION     KCLA01002236.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36373upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-7449"
BASE COUNT          111 a          106 c          122 g          131 t
ORIGIN      
        1 gaagggaagg cgggagagag gagggggcct gggtggctgc gattggtaaa gctctgcaaa
       61 ggcatctgcc agcaggtctt gggaggaatg tgaaaccaaa tcatttttaa agatagacgc
      121 agagtacaca gcatcttgtg ccagggcttg gattcatccc gctccgcctg ccttcccacg
      181 aagctcctgt cagcttgcct ctgtctcctc tgatgactct gatattccct cagaaataac
      241 gccgttctgg attctttgga attactaagg tggtaaaaga gatcatggtg catactgtag
      301 ggtaagtagg acacttgctt ttgtatttgc tagtagggtt cctctgtgtt ctgcctctgc
      361 actcagagag ctctgcagct cttgtaggat gaggtagatg cctaaatcat gggttcccta
      421 agcgatttat cccctcgttt ccccatacag attaattgaa ctttaaatca
//
LOCUS       KCLA01002237             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36388upu ultra-conserved element locus uce-7804,
            sequence.
ACCESSION   KCLA01002237
VERSION     KCLA01002237.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36388upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-7804"
BASE COUNT          266 a          243 c          198 g          251 t
ORIGIN      
        1 gccaaaaggc ctgctccctg caccccctcg ccacggctgc agcctccacc agccactcac
       61 tccgtgaacc cgacagggct catgatagat catcccgtca ccctcaccgt ttacagcaaa
      121 aaagctattt agccagtgcc tgcaaccctt cagcccgcag tgccttgaca gcagaggtta
      181 tgggaaaaaa agggaggaag aaagaacaat gtgcaatcgg cactgcatta gagatggaaa
      241 aagtacttaa ggctcgcaac attcatcaag gctgaataca taaatgccac attttgaata
      301 agccaagcaa aagacaatga caaaggaaag gcgcgttgct tcaggaatct ctatcatttt
      361 catttgctgc tgtcaggaac ctgttttttg cctctcactc tatcagccat tatagcatta
      421 atgaagtaac ctcacatagt tattgactgg cttgtcagag tctctgcctg atcccttaat
      481 agaaaccatt ggtcttcagt taaaaatggg gtgagctggg aggtgctgtg ggcatgtgct
      541 gaatttcaag tgcactcctg aggttatcaa aagccatgaa atgcaaatta ttatattttt
      601 aaacacacag atttcatgca accgagcata taaaattgac taatactgta ctttctgcat
      661 ccctaataac gtcgccaaag acgctctgcg tacgagcctt ccccacaaag ttgtgggtgg
      721 tatttgaata aacagagagg ggcctcgctt tattgccagg atcgagtcgt ttcctggatg
      781 ctgcaggtct ctgctccctc tgatagaagg tgatgcttct gcactgtctg ttcaaacaac
      841 aggggtaatc ctttgtctga atttctgtct cagatggaaa tgcgttcctc cttcactcca
      901 cacccctccc tttcatggag catcccaagt cccagaacta gtacattctc atttacta
//
LOCUS       KCLA01002238             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36403upu ultra-conserved element locus uce-7322,
            sequence.
ACCESSION   KCLA01002238
VERSION     KCLA01002238.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-7322"
BASE COUNT          182 a          191 c          197 g          150 t
ORIGIN      
        1 ggaggggtgc gtgtgtgggg aagccctgat cacaggagca caccacacag cgagaggcag
       61 accttgccca atataaaagt cactctctca gtagcaggag ccgttcctgg gatggccaag
      121 aaccttccac acgagacatc cctgacgcct gcgcagagga ccgaccggct ccttctccaa
      181 cacaaggcgt gtgtttcact cagccccttc caagagccag ttcgcggctg cggtggcgag
      241 gctgcagctg gcagcgctgg tggcgttggg ctgcgctgca tgccggttaa gctgtttact
      301 catgcaccgg tggaaaggcg acctggctat tgtggtgatt aacagagtca aatatcccca
      361 cattaagcag ccagccgggc gagcaggcgg ggttacggtt acattcaatt tgaattacag
      421 cggcaggacg ggtccggagg tattcagtaa cggattccgc ggcacagata cgctccgtgg
      481 gtaatgaatc aactccggag agcaacaaaa ggggagaaaa taaaataaaa aggtatttta
      541 tgatggttgt gaaaaattta tggagtgtag ctggcacgga attctataaa accaactggc
      601 tccaaccagc ccaacaacaa agcggccgct tctctccccg ctgcttacga gttattattc
      661 ccgagtcctc ccatgtttac tcattagcat ccagccctct gcaaatctga gcttcaggac
//
LOCUS       KCLA01002239             908 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36417upu ultra-conserved element locus uce-7207,
            sequence.
ACCESSION   KCLA01002239
VERSION     KCLA01002239.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 908)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 908)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..908
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36417upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>908
                     /note="ultra-conserved element locus uce-7207"
BASE COUNT          246 a          228 c          196 g          238 t
ORIGIN      
        1 taacttcctg ccatacacac cccattcctc atgctgggag atatatggga ggtaaatcag
       61 cacgaggtgg cagctctttg tctctcctgg aaaggcaaat tgcttcttgc aattacagtt
      121 ctgcttccgt gctggaccaa cacacccagc caagaattaa cttctcccca ctcccccacc
      181 ccggggtcct ctgccctccc aagactctgg gagttgtcac cacccaggta agaggagcag
      241 aggccattgt ttgtcaccat ctaatcaagg caataattac aggcagtgga tctggagcta
      301 agaagaggaa aaaggctttt caatcactgc ctctgcattt caatcgaagc cccatgctgt
      361 acaacactgg agaacaaggt gtaaatcagc ttaagaacag agttctgcat tcaatgcgtt
      421 gtggtttaca gctcccaaat gaccttcatc tatcttcctt agctctagag gtgtataatt
      481 gaactaaaga gagccttgaa taatgaggta gagagtggca gctccaccac tgctgcttaa
      541 tagtgcacca gccctgtgct ttgttttctg atacctaaca aaatactgca gcaggtccaa
      601 ttcttcaggg tgacacttgg tgatagtccc tcttctaaaa cagaaaagag cactataaat
      661 ccttggctgc agctaggctt ccaaaatgca atggtatgaa ccattttcta ttcagtatct
      721 gctctcgaaa gctcagagag acaaattgca attatctgct cgtctttcag ccatggaatc
      781 tgggggtttt ttaaactttc catcatccat gtggaagatt cccctctcag ctcagagggg
      841 tagagtgcaa caccttctag caagacatct gcactgggac cttgctggag tgagcaggga
      901 taaggtct
//
LOCUS       KCLA01002240             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36432upu ultra-conserved element locus uce-4113,
            sequence.
ACCESSION   KCLA01002240
VERSION     KCLA01002240.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-4113"
BASE COUNT          193 a           82 c          130 g          244 t
ORIGIN      
        1 aagagggttt gatatgttta ttatacacac aaaatactga ctaaattgtg gaaagaggtc
       61 tgaatttgtt gaaatgtttt cataggtctc acaaaagagc aatgcccttt tttcctttga
      121 aaggattgaa actcagtcta cagaatgtaa ctaagacttt atatcaggag ttcttgtgtc
      181 ctgtagtttt ttttttctat taacagtgag gtttttaata tacaaaaatg agctaatgat
      241 gcttcagatg atatatgtaa tgtattcttt ttattttatg tgtagatggc tcttggacaa
      301 gtccgagcag tacaacacac tgggagggaa tgccctctcc ttttaaaggc aggaattttt
      361 atttattacc tgtgtttagt atgtaaacat gacataaact agtggatctt tctggattga
      421 cacaaatatt tcttggaata cgtgtctaag tttttgctgc acaaaaatta tggtggttca
      481 tatagccgtt attttggggt gggaaagaag catctgaagt ttagcttttc agatacagtt
      541 taattataac ttttattcct ttactgtttg aaaaggattt ggttggaagt gaagtagttg
      601 atttgaaact gcttttttta aaaaagctat gctgtgagat gctttatat
//
LOCUS       KCLA01002241             560 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36448upu ultra-conserved element locus uce-6591,
            sequence.
ACCESSION   KCLA01002241
VERSION     KCLA01002241.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 560)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..560
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36448upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>560
                     /note="ultra-conserved element locus uce-6591"
BASE COUNT          175 a           73 c           85 g          227 t
ORIGIN      
        1 tttcttaaac atttcttgtt gttagggtac acgtgctaga tttgaatcct taacattttt
       61 aggcacagat ggaaaaagtt attggctcct taaaaactta tgggataaaa tggatcctca
      121 aagcatgtat gtacttacaa accaagctgt agagatcaag aaaagaactt tattgttgat
      181 ctcaagattt ctaaattgtc aagacttata tggagttgtg gtggaactag ttaacactta
      241 gagcttttgg tatgtaatga ctatttgcta tggactgata ttaaatgttt caaaggattg
      301 cattcttaaa cttcctggat ttttgttact ctcctcggat tatattaagt agttaaaaat
      361 ttctttgctc tattacatta aaaacataag aactttgggt ctcgtattta ttttcacttg
      421 ttttactaat tatttacaga acacagtttt aactttttta ttttataaat gtgtagtatt
      481 ttaaacatat ctttaaaaat tgttcaattg gaactacatt aacttctgat ttgtttttat
      541 taggattttt aatacacttt
//
LOCUS       KCLA01002242             549 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36462upu ultra-conserved element locus uce-6800,
            sequence.
ACCESSION   KCLA01002242
VERSION     KCLA01002242.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 549)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..549
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>549
                     /note="ultra-conserved element locus uce-6800"
BASE COUNT          141 a           88 c          102 g          218 t
ORIGIN      
        1 tcttgtggtt agtgtggtaa gttcttattt gtagagattg tttagttgtt gtgataaaac
       61 atacaaaaat tttggtaatg aagagttaaa aagctctcaa tgttttcttt ttataagcca
      121 cctgttgctt tagatgtgta agtgtataaa tttgaacaaa gtgctcatca cttgtcagcc
      181 atcagtggca gcataaaaat tacttgtggt gcttgctttg caagaagttc ttttgtgttt
      241 gtgacatcag ctttgtttta tacaattaaa gtattacacg ctagaataat ctaaattgca
      301 accactaaat ggtgatgtag ttcttttttc atagaactga atttgtttac tggttgtata
      361 cagctactga ctactgttta acatgacatg tcccttttgc cttgaacagt gttaggaaaa
      421 ggtggttttt ttgtgtcctg ttcctgtctc acaccccttc tatttctcct ctgttctccc
      481 ctgtggaagg cttttcttgt cctttcttta agatgtagat acaaatgcgt taaactgcag
      541 taatttttt
//
LOCUS       KCLA01002243             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36493upu ultra-conserved element locus uce-1750,
            sequence.
ACCESSION   KCLA01002243
VERSION     KCLA01002243.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-1750"
BASE COUNT          149 a          116 c          110 g          141 t
ORIGIN      
        1 tttttttttt tttttttttt gacagacagc acgaaaaaaa atctgcataa ggaaaagtaa
       61 ctgacagctg gggtcagact ctctctgttt aatgacactg ccagttacac attttgaatt
      121 gtttaaatat gagtctacag cttcaacgat catcatctcg ctggttccac ttttcatacc
      181 caacagccag gaaagtgaca cgtaattaca cacttactga tggtatcgcc ggggccgata
      241 attaaaactg ccacgggagg attgctattg ctagtctaca gctgggatgt tgtcaagagg
      301 tagaaactcc agcagctttt aacgcgatct tcttacaggt ggaccacggg cgccggcggg
      361 gaagtaatag aaaggcctca gcacatcatt cgcgatgtct cgcacaaatg aagaaaatct
      421 attaacaatc caataagtga aatacaaaca cgctgaccca agggttaaac tgtctgggtg
      481 gacgcaccgc tcgtcgctgc tccacattgt tctttt
//
LOCUS       KCLA01002244             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36509upu ultra-conserved element locus uce-6043,
            sequence.
ACCESSION   KCLA01002244
VERSION     KCLA01002244.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36509upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-6043"
BASE COUNT          161 a          107 c          114 g          170 t
ORIGIN      
        1 tggaatcctt ttagtacaaa agcttgaact gagataaaat gtgttttaat ttgaacccag
       61 taacagagat actacatctg ctaggatagc ttgttaatat atgtgcagca tgtatataag
      121 cagtaactct ttttccttag ccagttagct ggtgagttca ttagattccc tgtgaggtgc
      181 aaaagcaggg aaggaagcca gtgtggagtt attcattgtc ttatgactca attctaatca
      241 cttcagtcag tgtgactgac agagaaatgc tttccactgt gattgagagt attgatttct
      301 cagccccttt tggggcacac tggagagata caatcagagc cttcactttc aaaaaacctc
      361 ttcatctgcc ttaatcatct gatcgataat cagcatcagt gctggggatc ttcaacaaag
      421 ccttctccaa tgtctttatt ttctttcctc cgttgggcta caaatctgct gagtcaaggt
      481 gatcgtaata gatcagaaag tgaacagtaa gcaacaatag cgacagcttt aagtgatgct
      541 cgttaggcat aa
//
LOCUS       KCLA01002245             700 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36525upu ultra-conserved element locus uce-5599,
            sequence.
ACCESSION   KCLA01002245
VERSION     KCLA01002245.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 700)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..700
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36525upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>700
                     /note="ultra-conserved element locus uce-5599"
BASE COUNT          234 a          145 c          124 g          197 t
ORIGIN      
        1 tgtactctac ttgtgaaaga catgcaaaac ccaacgttct aaccagaacc tggggaagcc
       61 tgcagatgtt cagcagacga caccagctgg gtaatgaatg aattttatcc ttagtaaaga
      121 actgaccttg aatcacggaa cgagccgctc ttctcttaca ccagcggtct tctcctgtcc
      181 aaagcaaaaa acagcaacaa gtacacaacg cgcgcgtgct cctgcgactg agccagcaag
      241 aaatggaaga gcacttaagt tcatgcacat ttttattgag tagtaatata aaatgcttct
      301 ttcattgtta caagtgcatg ctttgattgc caacatttcg aagtcaaatt acaaaggcaa
      361 ggctgtaggc tgtagtgaat tacttgggca cttatacaat tgttaaaaaa tatcaatgga
      421 ctgttttgtt ttgtttcttt tactcctctc caatgaacca gttgaaaccc gtaactgaga
      481 tacaaaggga aaaaagtgaa aaaattacac cttttgtggc acgtgacaga acagaacaaa
      541 atgaccaaac cattgtgaca ttaacagtta tcatgcattt agaatttcac gtgtaactac
      601 aaacttattt caatttcaca aggtttgcta aacatgctac ccatctatat gtgcactgac
      661 aagcttatgt taaaaacttt aagaatactc ttttttcaaa
//
LOCUS       KCLA01002246             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36540upu ultra-conserved element locus uce-6684,
            sequence.
ACCESSION   KCLA01002246
VERSION     KCLA01002246.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-6684"
BASE COUNT          214 a          226 c          229 g          289 t
ORIGIN      
        1 tgtgttcatg cctgaccctg ggaggctcta tcctgcctgg caaagccact gctgctgcct
       61 gacaccaaac agctaacatg cctcctccag aaaaggtttt agttggaaat gttgaagtct
      121 gttgtggaga ttgaaaggta gagatcctgg gaggaggagg ctggcaggga ttttacaagt
      181 tatttagtgg aagaaggaca tgttgtttgc tgggaggtgt ttactgccca ggcagaactc
      241 ccagtggttt gcagcccctc tgtatggtct ctgcgtgtgt ggtaggtagc atgtgtgcat
      301 gtacatgctt gtggatgcct ttattttcat gctccagctg cctgcctctg atttaagggc
      361 aggttttatt ccccagctgc ctcagggctc ctcttttctg attgcattaa agtctctgta
      421 attctcccct cattaatgat tggcatattt ttacctctca ctaaaggagc ttggaggcaa
      481 ctcccgtggg gccctgcttg ccaaatgaaa caatttcatc ctgctccaga aacacattaa
      541 aaaaggtttg tcaggatctt accactagtt agggaaagct aatcaaatta cttctattta
      601 ttagctgctg cagctatgtg tcattccatc aagtacaggt agtgagacag acagggactg
      661 ggtgaacagc tctggatcct gtgctgctgc cttgtttggc acaacagcat ctcctgacaa
      721 ggaagactac agggtcacag agactgtgaa cttccagcaa cagtgcttct gtcctcattc
      781 ccagcaggaa ctcccctctg ctgcccttct tcactcatct gctccagcag actctaggaa
      841 gtcccagccc agtagctaca aggtttttgt cactgagtcc attgcttttg tattctgctg
      901 atgacttttt gcagttacca gttctattct gctgtgggct atttgttttg agatagct
//
LOCUS       KCLA01002247             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36555upu ultra-conserved element locus uce-7484,
            sequence.
ACCESSION   KCLA01002247
VERSION     KCLA01002247.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-7484"
BASE COUNT          175 a          160 c          170 g          215 t
ORIGIN      
        1 gtgctctttc attcccctct catcatagcc aagggttctc atcctttaca gaacagcaga
       61 gaggaggtgg ttctgatttt atttctttgt gaaaacttcc accaccacaa ttccctggac
      121 ggtccccaac gctctgggct ctgcctgcgc catcgctggt gttaaacatt gccgcttaat
      181 caagagtgaa gtcaatgcca gagatgcaat gttctagatc agcagtttcc aacgccgcta
      241 catcttaatc aagcaattag gtgccttttt ttgtgtgact gctcggtgtt ttccacattg
      301 gagaagggaa cagatttgct gctttgctct gatgactgct agcagcagtg tttgttgtta
      361 acagagacat ttacacctaa ccaccagttg gcaggtgtta acactttgtt acttgctatt
      421 cccacatgct ggggattgtg ggaaagctgt caagctctct gtcttgtgta acgcttcgct
      481 tttacaataa caacaacaac aaggagctcg gaacaaacgc agaagctctg tgggatcgcc
      541 agcaagggaa gctgtaggat ggttttcacg ggagggatac gagggtttgt ggaaacgtag
      601 agctattccc ttattaaggt ttagaaaagc atgaattttg tttgtaatca gtggtctagt
      661 ctgatcttca gctgaaactg agaacgttca gtagtctgcc tctgacattt gtgctcgttc
//
LOCUS       KCLA01002248             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36570upu ultra-conserved element locus uce-1783,
            sequence.
ACCESSION   KCLA01002248
VERSION     KCLA01002248.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36570upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-1783"
BASE COUNT          304 a          183 c          192 g          284 t
ORIGIN      
        1 ttatgtattt aatacagtaa aaaccaatcg taatcttctc tatatagtag acagcagcgt
       61 tattggacat tgtaagtaat gatatccaag aatctttccc caggaatttt aacgaagaag
      121 ggaggaaatc catatattgt gctagtgaca aaacaatatg cagttattgg gagggggggg
      181 ggggctttat tagaaagaaa catactggaa ggaatatgtt catttcaata gcatctgctt
      241 catatctctg cccccaaaaa tctttgtgca cacctacact ctttttatgg acagtacaaa
      301 ggaggataat agatgcctat aaaagtaact agtgaaattc tgcattagga taatctgtca
      361 cccatttcca ttttttctga agaaagcaag cataatcaaa agcctaaatg acaaagagtt
      421 gacagtaaga ttctgtagta aatgattcca gagtcgctgg cctgcggaga tgctgaagaa
      481 gtccccagca gacctgatta attccagttt ctccagctgc caggggagca gaggctaagc
      541 agtttcacag agaggagcct attaccacta ctaggctgaa atagatctaa tcaactcaca
      601 gccgctcaaa agaaaacttt acaggtttag ctcactaagg cagcgcttta aaatgatgac
      661 tacaaaggat catgggagtc tgaaagcatt tagtctttat tgcagctcaa ggaaattttc
      721 tgctgtggtt aggccatgct aatttactga acatgacaat gcctcccaga ttgcatgaca
      781 tcatctcagt aatggcccta gtcctcttag ttaaatattg cttgtattac ttctttaatt
      841 ctaaatactt tgtttcttga aatatgctct atcttggaat taatttgggt tactcttcca
      901 aatctatggg ctagcctgct tgatcattca gctcgaatga ttatgatgca cagcagtgac
      961 agt
//
LOCUS       KCLA01002249            1230 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36585upu ultra-conserved element locus uce-246,
            sequence.
ACCESSION   KCLA01002249
VERSION     KCLA01002249.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1230)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1230)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1230
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36585upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1230
                     /note="ultra-conserved element locus uce-246"
BASE COUNT          331 a          324 c          269 g          306 t
ORIGIN      
        1 gtcaggacga gtggtaaaat ctctgcagaa caacatcgct ctatggaagt ctaaaataat
       61 taatttaaac actcttgtaa caaaatggtt aaaaaagatc tctacccaaa atagatgccc
      121 atggagtcac ttgagagtat cttccaaaat aaaaaacttc aggttcccaa acttgtggag
      181 tatttcgctg tatggatcta gcacaggcta aaagagggag acaatggaaa aagagcttta
      241 ccaacatcaa agtagtgtgg gaggaagagt gaaaggcacc cccagaaaat atggtggtgg
      301 tgtaattaag gtgagaagcc tgatccccaa cacctccata gaccccgaat cctctctggc
      361 ccttaagtga attgaaaatt gtgcattgtg tctttaaaag gtactaatct tctttttttc
      421 tcttttccat cccaggaggt gaattagtta tccctctact ggtagaagac cctttagata
      481 tccctcctat tgctactcgt gcacctttca ttacactccc ccctaccttt cgccccctcc
      541 tcaccattat tgagaccacc aaagattccc tgtccatgac ctctgaggcg gggttacctt
      601 gcttgtcgga ccaaggcagc gatggttgtg atgatgatgg cttggtgata tctgggtatg
      661 gctcagggga aacctttgac tctaacctac cccctactga tgatgaagat ttttacacca
      721 ccttctcctt ggtaacagat aagagtcttt ccacttcaat cttcgaaggt ggctacaaag
      781 cacacgcacc caagtgggaa tccaaggact ttagacctaa caaagtctcc gaaactggta
      841 ggactactac cacgtctttg tcccctgagc tgatcctctc cacagcttcg tcctcgactg
      901 ggatggtgcc caaattgcca gccggcaaaa tgaataaccg tgatctcaaa ccccagcctg
      961 acatagtctt gcttccgttg cccactgcct atgagctaga cagcacaaag ctgaagagcc
     1021 cgctaatcac ttcccccatg ttccgtaatg tgcccacagc aaaccccacg gagccaggaa
     1081 tcagacgggt tccgggggcc tcagaggtgg tccgcgagtc gagcagcaca acggggatgg
     1141 tcgtcggcat tgtggctgct gctgccctct gcatcctcat cctcctgtac gccatgtaca
     1201 agtacaggaa cagggacgag gggtcctatc
//
LOCUS       KCLA01002250             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36601upu ultra-conserved element locus uce-7489,
            sequence.
ACCESSION   KCLA01002250
VERSION     KCLA01002250.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36601upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-7489"
BASE COUNT          221 a          151 c          135 g          275 t
ORIGIN      
        1 gaattcacat taaccaccac attaccgaag tgctctctag ccctccattg ttagagttca
       61 aggtaatacg tgacagatct gaacatcctt aaggaagaaa atctccggca tgtgtagatc
      121 acagttctct tcactaggag attacagtgg ctttacatct gttacaaaca tgcagttaca
      181 ctgataggtt caacagtgga atattacaca tcatgctaaa attctccacc accctcttat
      241 cttctttctt tgtttctttt tttttttttc ccatttagct attgctggct tgccagagat
      301 cttgaacttg agaaaggtta gccatcacaa tgctggagca gtttgtgagc atcagcagat
      361 ttagcttgta atttcattga tctatgtggg cttgctgttt gcaaaccagc tgctgcactg
      421 tttccccaca gctactgatc tgagcagcat tgattttttc ccttacatta acatagcatt
      481 acttctttaa tgggcaataa atgactggat gtaaatacaa gcagggctgc aacaacaaaa
      541 gagaacacat ttgttatttt tatttaaaga actctattaa tattttccac caaaaaaatt
      601 aaaagcatga gttatggatc aagtgctatt tttagtgggt ttatttcccc atacttcttt
      661 tgccaagaat tcgtcttctt ttcttattgt gttcacgctt tttccaaaat gttgtatttt
      721 ataagattgc gtttttgcct gggtataaat gaattttttt aaggaagaat taggggcaga
      781 aa
//
LOCUS       KCLA01002251             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36617upu ultra-conserved element locus uce-5297,
            sequence.
ACCESSION   KCLA01002251
VERSION     KCLA01002251.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36617upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-5297"
BASE COUNT          208 a          163 c          189 g          295 t
ORIGIN      
        1 tatcttaatt tctatttctt ttagaagggt ccttttcaat tccattaaac tttgatttgt
       61 ttgatgctgc gtcgtgtagt cacttgtttg tttgcggctg gtccaggtgc tagttgaaac
      121 tgataagagc tggcagtgtt tgttttatca tgagccttat ccagcctgat atttaattat
      181 gtttccatgt ggatttgtaa tgtggattaa tagttttatt ttacctccgt gattagtttc
      241 tgtttgttct aatttctttt tggctttttc ttgaccttga ggtgaaaaaa cacagaagat
      301 gtattccctc aatttaatgc cagtctgagg tgtttctcct gcatcatcag atcaatgaaa
      361 agtaaatagc ctacacttct tgtttcacag tgcagtattg atctttcttc agcttttgct
      421 tccctttttc cctgcgtctt gtgtctttca acccctggga ccgaagtgat tgccatagat
      481 tggacaagct aacaagcgca tgataaggaa ctggtgtttt gtggtatact cacattcaca
      541 tgcctggtat ataaagcctg gacctctccg cattgaaaga gaggtgccat tttgtgtatg
      601 gcacaagtca ctatgaaaaa gagccacagg gaaggcacca gagaagcaaa ggattttatt
      661 ctgcacacag atcttttatt cctacagctg gtgccaagct gggtgaggac attactcctc
      721 tgaaaagtaa gacaagtagc ctgcggggaa tgccacaagc tgctttctgc tatggcgatg
      781 tatgggatgg tggcaggcca tgggtaagtc tgaactcgat cttataatga ctgtgatatg
      841 tgtgtcaagt cctat
//
LOCUS       KCLA01002252             537 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36632upu ultra-conserved element locus uce-1941,
            sequence.
ACCESSION   KCLA01002252
VERSION     KCLA01002252.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 537)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..537
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36632upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>537
                     /note="ultra-conserved element locus uce-1941"
BASE COUNT          165 a           99 c          101 g          172 t
ORIGIN      
        1 gaaggcagtg ttagagcttt tgctgaaggt ttacgagtct gtgtaaacag cacgtctgcc
       61 ataaggagca gtgaagtctg tagaatcctt gtctaaaact gtcctggcat taaagtttgc
      121 tgtgcaaata tcacataata ccagagacat ctgaaatctc ctatttagga atttatggaa
      181 cttatatgtt tgcaggcgtc agaaagtcct ttttatatag ccccactgct tcactctaca
      241 atattaatgc actctgctcg aaaagccgtc ataaattata tttttaatgc tcttaccctg
      301 gctttcttaa gatgcataca ttcttggcaa acaatcaata aatagggtaa tcatgagcag
      361 aggccaaaga atttgctgaa gtgctgtttt tccattttta atagataaag atctaacaat
      421 acggactgct gtgtctgttc atttcaggat caatatattc tttgttttcg ccaaaccgag
      481 gaaaaaataa atgattgtac gataaatgtt atgcatcggg cacaatggaa ttcctct
//
LOCUS       KCLA01002253             879 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36647upu ultra-conserved element locus uce-4546,
            sequence.
ACCESSION   KCLA01002253
VERSION     KCLA01002253.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 879)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..879
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36647upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>879
                     /note="ultra-conserved element locus uce-4546"
BASE COUNT          268 a          166 c          190 g          255 t
ORIGIN      
        1 gataggcatt actgagcctt agagtgtaga tggacagcat cactgcggta ttctcagagc
       61 tctttacagc gctgtgctgt atccctctct cccaaacaca tcacctttct ctttagtatg
      121 caaatgcaca attaaaagca ctcagcagat agggatgaat aagctaatac agtgtgctgc
      181 tagtcatttg ttttcattaa ctgggagtgt gtggaagtac cccaaagagc aaagagaagc
      241 tgggaagttg taatagataa gaatctacag actgccttta tgtaagacaa tagatctcgt
      301 gaatattctg cttcctctcc aggcagtgag ctagtatggt taaccaaaat tgttgagtaa
      361 ttgttctgtg gttgagaaca aaatgctgaa ttaaactgtt cccagcacaa taattgtgtg
      421 attacagcat ttatgttgct ggccaaaaga acagtcatta ggtttggaag acttaccaaa
      481 accacaggca cagaaaaaaa atgcaaatca catgtaaatt gtcctctaat acctatagtg
      541 gctttaaaat ggagctaaga gtatgctatg tgtatattta aagcagtcaa gccagaaaaa
      601 atgattgtac tttcaagaac tactttagac taggaagaaa atacccaagg attattcatt
      661 ttcattatgt tgtactcccc ctctcatgag agcctggact tcatgtatta tttgtgtatt
      721 ctgctttgtg caggctcgta tctttttccc cactgcatac caatcggata ttgtctggga
      781 tggtaaggta ggtaggactc ctacacccag ctagatcttg ggccggggcg attcaaagaa
      841 cagtgtagag gggaggcagg cagcaaatgt ttatctgat
//
LOCUS       KCLA01002254             684 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36663upu ultra-conserved element locus uce-4782,
            sequence.
ACCESSION   KCLA01002254
VERSION     KCLA01002254.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 684)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..684
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36663upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>684
                     /note="ultra-conserved element locus uce-4782"
BASE COUNT          189 a          128 c          160 g          207 t
ORIGIN      
        1 tcttgcccca tggtactgag ctcgaaaggg ctgctcaaag gagctaattt gatatgcttg
       61 atgaacaggc tgagcctctg ctttcttctg agaagtcact tgatccaaga agtcctgtgt
      121 ggaggaggaa gaagaatgat ttgcctcatc acctgaaaag ggaaaaggat gctgcgaatc
      181 accaaccatt agtccaaaat gggacttgtc tggagttgtt cttaatggag agttcattcc
      241 cgatcgaaag ctattgacag gtatagatgt gtagaccttc tcaatggaag gaaaagctgg
      301 ctgggtcgta agagtctggt tatcagtcac aaaattaagg ctcgggttgt tcaaataggc
      361 atcattttgg ctagttctgt ccaaagcttg ctgtaaaaac tttgaatatt cttgtaacat
      421 actagcttta tctgatgaag aagcttgaga gcttgttcca actgtctcag actgggtgac
      481 ctcagatact tctgaagaat tgattgatat actagaggtc acctcagtgt cagccacact
      541 gaaagatatc tcatgctgtc cattagcctt gtgtgagtaa tgatctaata gagtttgcag
      601 tacctcatct ggaatgacat ttttgtcatg gttaccttta atttcaacat tcagcgcttg
      661 tgtgtctaat attgaagctg tagc
//
LOCUS       KCLA01002255             976 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36679upu ultra-conserved element locus uce-8014,
            sequence.
ACCESSION   KCLA01002255
VERSION     KCLA01002255.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 976)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..976
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36679upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>976
                     /note="ultra-conserved element locus uce-8014"
BASE COUNT          281 a          223 c          176 g          296 t
ORIGIN      
        1 agcacggata tttcaccccc tgtagataag tgcttactgc tgagtacgtg cctatcctct
       61 ctcctgttgc atttaacacc ctgtagaaga cactcaattc actagcaaag tctcctctgc
      121 tctaagcagt cttatgcaac attttgagag ttataaactg ttcctcgccg tcttcagcct
      181 gcaaatgcgg ttggaatcat tcgaagaatg aaggattaaa caaacaaaaa ctaatgagaa
      241 gtcaaaatat gcacactgtg caaaagcatg gctgaatacg tttggccttg tataaatttc
      301 acccagtcta cgtggggttt aacatatttc catgacttta actaagaaaa catcttaaag
      361 cacagcccat gggaaaccca agcttgatta gttttacctt ttactacagc ctgcagagtg
      421 taaaacacag cacatcagaa ttgaatttgt catctccaga cctcacagga attttaggaa
      481 ctaaatagtt aggaagcatc ctggtacttc tctttgcttt aatcatagta gaagtttcaa
      541 tttaaacatt caggaaatct cccttattta aagcaatcag ctcgttgctg acagggtctg
      601 gctttactgt gtttaatttt ttggcatcat gcaaaacttg attgggtaca gccagtgtgc
      661 gaacaggtcc tctccccttc cctactcccc agaaaaccta aaatatctcg gatctttgct
      721 gtatcattgt cagccctgca tatcccactc tgtgtgcaga ccaatgagat attaggcaaa
      781 aattcaagtg gaaaatatag atcatagcta gtgcagccac ggaaaacctt attgccaaat
      841 agctctccta tgtcttctgg ctgctaaagc tcaggatcca gtcttcggtc cagttatttt
      901 gcttttattt tgagagtgct tcttcatctg ttactcgtag attcacagca catgtctaag
      961 attgtagcct actctg
//
LOCUS       KCLA01002256             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36695upu ultra-conserved element locus uce-1896,
            sequence.
ACCESSION   KCLA01002256
VERSION     KCLA01002256.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36695upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-1896"
BASE COUNT          233 a          112 c          154 g          150 t
ORIGIN      
        1 taaaaaacat aacttggcac agattcctac gtgtttgctt ttcaaaaaga aattttgggg
       61 gggtggttgg aggagatgct ccccagagga cacgctacaa ccagcaacag caactccact
      121 tctgtctgcg tcacggcacc tttcaaaaag aagaggtact acctctgcga ttgaagaatt
      181 cccgagaata ttttccagat agagcaaagt gccttgggat attgcctagc agctctatga
      241 tgtgtgctat gtggtctatg agggagagaa aaaaaggaca cgggagtgga aggggcaggg
      301 aaaggatggg ataaaaaaga agaggaaaga aactggaatt agtaaaaaat cagaaatagt
      361 ttcaaatcaa caatgtttgc agcaaatcca tgcagaggtt tccaggactg gcagagctct
      421 ggcatcatta gtagcattta ggaacaatga atgatgccca cgttaccact gcaaagagca
      481 tttacaagca aacaagcatg aaaatggaca ggtatacaga tggaagcagg agttaattct
      541 gattttataa aaaattagta attgcctaat tcaaataaaa atacacaagg taaacattat
      601 tccagtgtca ctcgtatgaa gaggaagtac tgtaaaggtc aaattcgcc
//
LOCUS       KCLA01002257             924 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36710upu ultra-conserved element locus uce-3989,
            sequence.
ACCESSION   KCLA01002257
VERSION     KCLA01002257.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>924
                     /note="ultra-conserved element locus uce-3989"
BASE COUNT          284 a          199 c          173 g          268 t
ORIGIN      
        1 ccctgccaga ttcttcagtg cagcagcact tgtgggactt tctgctatat aaatagtaat
       61 tacctccaat gcagaatgca tttgcaaaaa taaatatact aatgcataca cccaaactcc
      121 tagctcagat ttctagttat gaagcaaacg tgaagattgg gatattctgg ggaaaacagg
      181 aatgctttgc tcaacaccac ctgacaggca gcgcccaagt acacacacgt gtgcatggat
      241 atacggagcc acctcagcat tcacatgcca acgctaccgt cttaacgaga gggcatctac
      301 cctgtagacg attcaatcga ttcctcaagt gacacccaca catgcctgca cacacaaaag
      361 cagatgtggc attaagattt acaaagttat cgaaactttt aacaagtaaa acgcgtcttt
      421 acttagctac accagaatga ggaataaagg ggtttacata tgttccaatt ctaaacctat
      481 caatcaaacc catgttattc ctttgggagc ttatttacat gcatatttat cagcctcaca
      541 tgctaattcc ctgctgtttt atgcctgcga ggcatgttta tgagtcataa ttgttgatct
      601 catttgatgt atttcactga agtaagacat tattcagtta tgtggcctaa tgtcagtgaa
      661 ttacgatgac ctgatcttcg aaatgcgact tgctctttca tttttattag aacctaactt
      721 attcagaagg agatctacgt ggaaatggaa gattacgagc tttagcagcc attgtactta
      781 aacatctcat ttgggaaaca gccctcctaa cctctaggca aagatttgaa agagcaattc
      841 ataaacagca aatgaaaacc atttttgcct ggaatgagta gagatttctc tgagtgggac
      901 cttggaaggt attttcgtgt tctt
//
LOCUS       KCLA01002258             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36726upu ultra-conserved element locus uce-903,
            sequence.
ACCESSION   KCLA01002258
VERSION     KCLA01002258.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36726upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-903"
BASE COUNT          341 a          193 c          166 g          280 t
ORIGIN      
        1 ggggaaagga ggccaacagt agcataagaa actaaatttc atctgagtca ttaaatattt
       61 ttcccttcag aaatttagga aatcatattg agagggtttt tattgctgta aacactattt
      121 ttaaaatgta aacttcccta cttttgccta atattaaaag ctctcattca attaataaaa
      181 tacaagccaa gttggcaaag gacttagttt ctctgaacag aaactagaga catacaacag
      241 ctccaagtaa aatggcaagg ccttttgtct taaagaccag aaatgcaaca gaaacaaaat
      301 ataataaaaa atgaaaattc aggtacagga attatgtatt tcatactgaa taattatttc
      361 tgtactgccc gtaaatcctc tctggtaagc tgtgcatcta aaactcatcg aactgccaag
      421 gggtaaacgc agctccatcc atcacacagc cacttgacaa atacattcca taatagaagt
      481 ttatttttat gggaggctga atcaaggact ttcccatgca tacaaaaact tgtcaaaatt
      541 atttatgagt cttgctgaga cacacaatat gtcatatcaa actcctattt tccttccaag
      601 cacagactgt caatatctct gctactatca ataatgtgga acaccgctgc tatgggccct
      661 caggattttg aggtcatttg cccatcctag gctgctgcca gacactgtct ctagctgcaa
      721 tgcagctgag ggaggtgcat ttacaacccc atgaggtgta gttaaggtaa gcactaggga
      781 ctgcgctcaa aggctttgcc aacgtaaaat aaaatggaaa catatgtttg aaaaattaca
      841 gttgattatg aaaataatga aaaaaattgc attggcctct ttctaaatta gaaaatccag
      901 aagctcacca gcattctctg gtataattaa acaaataatc acttctgatg aatatgtttg
      961 cacctctctg aaaacatgct
//
LOCUS       KCLA01002259             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36741upu ultra-conserved element locus uce-3248,
            sequence.
ACCESSION   KCLA01002259
VERSION     KCLA01002259.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36741upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-3248"
BASE COUNT           51 a           77 c           64 g           72 t
ORIGIN      
        1 ccacccagcc ctgccaccct tcgtctccct gctgcaggtt tcgctcagga gttagccact
       61 caggaattcc tagtgcctga ctgagcagta atttagcaag ctctctcgtg ctcttttcct
      121 gtcagcatta acatgtcaat tcattttaat agtctgggca tgcgcagagg ggctgcgttt
      181 tctcagtagg catccctgga gcccaccccg tggtgcagaa atgtgttaga gcttgtctca
      241 ggccacagag actccggcag gttt
//
LOCUS       KCLA01002260             515 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36755upu ultra-conserved element locus uce-5348,
            sequence.
ACCESSION   KCLA01002260
VERSION     KCLA01002260.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 515)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..515
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36755upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>515
                     /note="ultra-conserved element locus uce-5348"
BASE COUNT          184 a           82 c           84 g          165 t
ORIGIN      
        1 gttcaaagca gcgacaatat atcctacttc gcattatgtt tctatcaaac aaaacagaga
       61 taatttactt taattttgtt gacatacata atgaaacaga taggagccta tcaagtacca
      121 ttcttctcct gataagacca taacatcaat ttaattatgt catgtgatgg cttcaaacaa
      181 tttagatatc agactgaagc ttcaaactga aatggttctc ttgataagca aaaattttac
      241 tgctgcaact ttcagtgtga aaagggcttg caaacatttt tgttaattat gtattacagc
      301 tgtccttcat aaagttaatt actaatagct gaaaggcaat agactctatt tgcatatgta
      361 catgaaaggc atgacatatg caaaaatatg attttaatta gcattccatg atatgaaggg
      421 ctacaaatca aactggcatg ttataagatt tttaacatta aacgctgaat tcatctggac
      481 atgtttgcag taatggacaa tggaaggact gtgaa
//
LOCUS       KCLA01002261            1019 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36771upu ultra-conserved element locus uce-5119,
            sequence.
ACCESSION   KCLA01002261
VERSION     KCLA01002261.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36771upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1019
                     /note="ultra-conserved element locus uce-5119"
BASE COUNT          262 a          220 c          181 g          356 t
ORIGIN      
        1 aaaattatat atgctagtga atataagagg caccagtcag ttttgaaact gtatcaagct
       61 gaatctgtga aatgccgata atcaatcatg ctaaacagcc tcatgatttc taaaaacaaa
      121 caatagtact caaatttaca acttcatttg gttcttcata aattaatgtc tttgttagca
      181 ctttctgaca tcatttcttg ttaacttaag aactgatagc tcgatttttt ttcagatatt
      241 ttgatggcat gacaaatcag aaagaagagg atgtactgta tgactagaca ccagatcagt
      301 tctgtttgtg gattacattt tcagtaagat gtatggatct attttttcct tgttcttata
      361 tatagatcat gagacttgac tgaggcaata tacataccat ccatccatct atggcgaact
      421 acagccatgc agctgacaac attttgcaaa atctctctcc tttaacagct tttctgaaac
      481 tgacttcact gggtttcata ataggagtca gtgtggtggg taaccttctg atctccattt
      541 tgctagtcaa agataagacc ttgcatagag ctccttacta cttcctgttg gatctttgct
      601 gctcagacat cctccgatct gcgatttgtt tcccatttgt tttcacctct gtaaaaaatg
      661 gctctacttg gacatatggg actcttactt gcaaagtgat cgcctttttg ggggttttgt
      721 cctgctttca cactgctttc atgttattct gcataagcgt caccagatac ttagctattg
      781 cccaccatcg tttttataca aaaaggctga ccttctggac ttgtttggct gttatctgta
      841 tggtgtggac cctctctgta gccatggctt ttcccccagt tttagatgtg ggcacctatt
      901 cattcattag ggaggaagac caatgcactt tccagcatcg ttccttcagg gctaatgatt
      961 ccttgggatt tatgcttctt cttgccctta tcctcctagc cacacagctt gtctacctc
//
LOCUS       KCLA01002262            1016 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36786upu ultra-conserved element locus uce-6875,
            sequence.
ACCESSION   KCLA01002262
VERSION     KCLA01002262.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36786upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1016
                     /note="ultra-conserved element locus uce-6875"
BASE COUNT          308 a          207 c          180 g          321 t
ORIGIN      
        1 ctctcctagg aacagaaaac aatattcatc tgtgaacaca tggaaatgtt tttagttggt
       61 tattcaagta gttctctgcc tttcaggata caaaactggt gctgacgtag tacagagtac
      121 ttcaggattt tttttccttt tcctttcagt ccattccttt tttaaactta caaaataaaa
      181 aataattatc ccaggagaat gtgatgtctg tctaattttt tccactgtat cgataattac
      241 tgtattttac atgccccttt taattacata atgcctgaga ttaaaattca acagcctctc
      301 tcaaagagaa agtgctttaa tatctggagt gctgctcctg gaaattggca tctgaaagac
      361 aggctaaaaa aggggcataa atactaatgt tcccatcctt cctaactgac tgcaatgcca
      421 atgagctgca gcaactctta acacagacct cccacattcc tggtaggatg ttttctagca
      481 gagtgatcca caaatattat cattcaatga caatacagtt tcatcaaggt acgtctcaat
      541 ccacaggata caagccccac acaacagacg gaagatttgg cgcagtgatg cgcatactgc
      601 gtgtgttact tactggttat tgcagtggtc ataccgagtc ccgtatggca ttacattaac
      661 gaatggcatg caagcacctt ctgttgaaac atctgcgaca gggaaatttc aggcattttt
      721 ccagatattt tttgtgctct ggaccaaatt ttcattaggg ctataaaacc tggcaggcag
      781 cattgttgtg tatgattttt taataaactg ggacatgcct ttgttagagg agtgaagaaa
      841 agggctcttc agagacttct tcctattaca aaaagttcag aaaacatatg acagctaacc
      901 aaacattgtc ttctaacttt tctccctgtc tcctccaagt gtaagaattc ccacttcttt
      961 agatatattc agagatttac aggtttggaa ataaaaccaa aaatgtagat tttttt
//
LOCUS       KCLA01002263             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36801upu ultra-conserved element locus uce-4807,
            sequence.
ACCESSION   KCLA01002263
VERSION     KCLA01002263.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36801upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-4807"
BASE COUNT          148 a          135 c          103 g          126 t
ORIGIN      
        1 gtaagacctg ctgctagagc aggcgccagg ccctactctt taacttcttt gtcctcttgt
       61 cagattttat tcctgagccc agatggacct gattattgtg cttactcaca cgtcactgtg
      121 aggtgaaata cacagcttca ccccgctgcc taaggaaaat aaatagggct ctctcccacc
      181 acccacaccc actcccacac ttccctccga acttgaaaca aaaaccctgc aaacagattc
      241 ctgatggctt tgtcagggag gggggatggt gaggatgggt acagtatata acatctcagc
      301 tctcccggat cagtcacgct tcctaattca ataaggtgag aaggagcata atttgatcat
      361 atttgttttg catcactgca aaaacagaaa atgaggggct gcagaaccgc accaatttac
      421 ttcatccgac cttgattaaa agaaaattaa ttgccgcatc tctcaggata tctcaggcag
      481 cagccaatgg ctctccagaa tggcacaaaa aa
//
LOCUS       KCLA01002264            1178 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36817upu ultra-conserved element locus uce-2020,
            sequence.
ACCESSION   KCLA01002264
VERSION     KCLA01002264.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1178
                     /note="ultra-conserved element locus uce-2020"
BASE COUNT          275 a          263 c          267 g          373 t
ORIGIN      
        1 aaaaaaaaaa agaacaaggg atttaatatc ggataaggca tgctctctat atgaagtgct
       61 ttataggtct tcacaagaca ttacaagcta ttgaattccc atcaaggaaa cctatttctg
      121 tttaattgtg ctaagtgcta aggtttactc tttaggtttt ccattctttt cagcttgtgc
      181 attgttcctg tgtaggcccc tctggatgtg agttgtgaag tcatacttgt ccgtgcaaag
      241 atgctggcat atgctgcact ggaaaggtcc actgtcacca tggcaactca tatgcaaagc
      301 atacatcact tcatccagaa agacaatgcc acagtgcaca cacttggtag aaagttcatc
      361 ttgagtactt ctatccactt tctctgtttt tactacattc aagggacctt cattttttac
      421 atttggtggt gccttactct tttccttgga ggcaccgttt gcagttggcc caggtctgga
      481 atgctttatc gccaaatcta gaggaatgtc attgtctgat ccgacagctg aaaaatgagg
      541 aggcagatta aaggtgggat aaggcacata gttttggcaa ggatttggta ggccaggcac
      601 atgactcaag tagtgtggat tcccaggaac agacagctta tatttactcc agaatctcag
      661 ccagtcagct tcactctgaa agtcattgtg tacaaacgga agtccaaaca gcgggtactg
      721 gtacttctca atagggcttc caggcggtga atagtttggg tgtttcgcag gtctcatgta
      781 cttttcgatc gggctgcctc tctctgagct tcctttccct tctgatatcg atgaactgtt
      841 tcctgggtct ccagaacttt cctgagggct ttttatctga atgtgcaaag gttgcatcct
      901 tttgtgaata tccagagttt ggctgaccaa tatgggctgc tgggcagaat ggcttttagt
      961 caatgaacct ggggcctcgt atttgctgag gctgggaagc tgcatttctc tctggtgacc
     1021 ttcaggtaaa tgatcctctg acctcctctc taaggggctt ccattgactt gttcctcact
     1081 gctacccctc tgctgtttgt ttagctgctc agcctgaagt gcctccgggt taaggcgctt
     1141 tcttgttcgt ctccgaatga tctgctcacc attgttct
//
LOCUS       KCLA01002265            1067 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36833upu ultra-conserved element locus uce-7732,
            sequence.
ACCESSION   KCLA01002265
VERSION     KCLA01002265.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1067
                     /note="ultra-conserved element locus uce-7732"
BASE COUNT          274 a          236 c          213 g          344 t
ORIGIN      
        1 tttctctagt agctatgctt cttcaataat tcaggaggag cagcagatct tacagcatat
       61 ttgatgtgcc agcaaacaga ctggagattg tttcgtttca attagcccct ttgttgccaa
      121 caaaagactg acaaacacac agagagggac aggcatatgg cacttctgct tttcactttg
      181 ttttttattt gatggtaatc ctcctgtcaa cctcttgccc attcctccac ctcgtgccca
      241 ctttgtcctt taccatgctt tatctactat tgttcttgta tcgtcttact tgggatcaag
      301 tgattctctc ctgctcaaaa ataaaatgat gtatactttt tcagactctt ctgatctccc
      361 aggctaattg gctcaggtgt aaaccaaacc agcagggctg tggctttgat gtgacacttt
      421 agagctgtgc acctggtaac atccctgtct gtgtgtcaaa taccagccgg ccctgcctgc
      481 tgctcaaacc cagctaataa aagcgctagt aatcacattg tattacaagg ctcaaattca
      541 tgctgttact ttattgcaag ggtgtcatta attttgcagg gtgaacctgg aatccgatct
      601 gacctgtttt taataagtgt gggtctatgt gcaagtgtgt gagtgacaga aaggtgacgg
      661 ccagctgttt cttctttatg tatggtgtta cgctttgctt tgatcagtaa tgctgcttca
      721 ctttaaaacg aaacttgttt tgtaaggatg cagaagaggg gccttcccac cacccttgtc
      781 accgtggttt atttgtaaag catacacaat taggaaaagg tcacccaaca gtaagtcata
      841 tattactgct ctgctacata ttgttcacct cttctactca ataatcctgg acccgttgtt
      901 ggacagctgt gttagttctg ttgctggtga tggtgtttgg gagaatcaca aacctaggta
      961 aagcctaagg gaaaactact ttttttcaaa aaatgaggtc atgtctcaaa actaagttac
     1021 agttcttcca ggtcacaaca ctgtttttaa ctccaatcca gtgcaaa
//
LOCUS       KCLA01002266             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36849upu ultra-conserved element locus uce-2662,
            sequence.
ACCESSION   KCLA01002266
VERSION     KCLA01002266.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36849upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-2662"
BASE COUNT          103 a          136 c          156 g          128 t
ORIGIN      
        1 tgtctttcgc tctcgggaac ccctttggtg ctcctgtgca gatgggggtt ccaggggagc
       61 aggcgcctgg tccgcgcggt cgccagcccc tcataaatta tttggcccat tttttccagg
      121 gaattgattt aatcgccgct gggttcatcc cggagccccc gggaatttat aaatgggctg
      181 ggcacgctgt tcaggcacca gaaaataaac ctcggggcta tttactacct ctgagagaga
      241 taaagtttgc gggtttgatt ctgtgtgatt atgttcagca agggtgacct ttagaggcaa
      301 caatattgaa gtgtaatgag gagatgtttg atcactgctg tgcagtgagg ccctggcctg
      361 actcctccgg tccttgccga ggccgtgaga tccagccttt aacctttaga ctgctgaggg
      421 tttcccaggt gcagggatgc agccccctat ggagtgctgc agcatccctt tcacggcctc
      481 gcggagcccc agccggggag ggaccgcagg gccagaacag agc
//
LOCUS       KCLA01002267             385 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36864upu ultra-conserved element locus uce-5956,
            sequence.
ACCESSION   KCLA01002267
VERSION     KCLA01002267.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 385)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..385
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36864upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>385
                     /note="ultra-conserved element locus uce-5956"
BASE COUNT          120 a           72 c           57 g          136 t
ORIGIN      
        1 tggaataagc ctaattaatt atgtctgttt gatgtcactg caactaaaca gtaaattcaa
       61 taatctcttt acattttcac catttaacct cctgcaggct ccctaatgtc tattcagatc
      121 tatattaaat taagtaccaa tactaatgaa gggcaatgaa cgtggctgtc agtagatttt
      181 tctttcatta agcacattat cctcttactg agctgtaaat tagtaaacat tagttttgct
      241 aaaccatgca aaaagacagg aagaaaataa tttttaattg caccccttaa gccatttgca
      301 gaggtttctc tgtttggttt tttacctttt ctgtttctca ccggatataa aaaggtccct
      361 ctagtgaaat ataaatgttg gcatc
//
LOCUS       KCLA01002268             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36879upu ultra-conserved element locus uce-2103,
            sequence.
ACCESSION   KCLA01002268
VERSION     KCLA01002268.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36879upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-2103"
BASE COUNT          287 a          160 c          169 g          285 t
ORIGIN      
        1 gctgttagtt ttaactgggt agtcaacaaa gacaggtatg ggaggtcagc tgctgaccag
       61 atgctgcctt caattaatat tccaacccta aaagacattt atcattcagt ttagaaggca
      121 gagcagctga gtcataaaag cagcccacaa aagatatttt aaagcagtta tttcggctaa
      181 attgcacgaa ataaattagc cctgaaaata aacatatttt gtacagtcta tgtgaaccaa
      241 atgtcttctc cctgtaaatt gcttggaata agtcggagtt tgtgtttgac aagagcatac
      301 attttcttca ttactacatg ttgcttattt ttttcctttg aaaagggtta ataaagtata
      361 agatatcatt gccagaggaa tgagtcctgc acacttttaa ggtaggaaga tgctgcagaa
      421 gaacaagtta aaaagaaatg cagaatctgt gttgtaatgc taacaggcaa ttaacaaact
      481 catgggtgtt aattatcttc atactgtatc atgttcaatt agctcagccc ctgcaacaaa
      541 ggcaaccgtg agcaattgct ttgataggca tacagtactt catttgtagt taatcggttt
      601 aagcctcgca gttgctaggc tacaccagtc tccagaggta aaaagctgca cagatgcact
      661 atgtttaaat gactacagag aactgtttaa actcaaacca tgtataactc tttattgatt
      721 tttcacagaa gatctcagct ctgatgataa ggttttgata tattttcctg ctactgccag
      781 ttccttggag tattgcagaa tctgtcaata tgcttctatt atgatctctt gatctgtggc
      841 tataaaaacc tttagctgca gcccttatta taaaataatg gaagaagcaa tatttgattt
      901 t
//
LOCUS       KCLA01002269             421 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36895upu ultra-conserved element locus uce-4337,
            sequence.
ACCESSION   KCLA01002269
VERSION     KCLA01002269.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 421)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..421
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36895upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>421
                     /note="ultra-conserved element locus uce-4337"
BASE COUNT          138 a           99 c           77 g          107 t
ORIGIN      
        1 ttaatcccac gcatttaata tcctacctca aacaaaaaca attatagcaa gaagcaggct
       61 cttatggcag ccttagtaag accatgctcc ttcttcagag cacaacggta aaagagccat
      121 gcaaatggag atgaatggag cacaagccac cgaggtaatt aaaaatgtat tttccatctc
      181 ttagtaattg aattgtgtac aagctgcaag ttaatgaggt catctaccct cgagcactga
      241 caggaaagca ggaataatta tctttcaatt ttttcttatg tagcaattaa ttttaaccat
      301 tcgcctacac tccactccca cttccctcgt tccagtcagt caaagtcatc actaagctga
      361 attgacaagc aattgatacg gcagtggctc agagccgcca aggcaggcaa ggcaatcaag
      421 g
//
LOCUS       KCLA01002270            1151 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36911upu ultra-conserved element locus uce-1956,
            sequence.
ACCESSION   KCLA01002270
VERSION     KCLA01002270.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1151)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1151)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1151
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36911upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1151
                     /note="ultra-conserved element locus uce-1956"
BASE COUNT          338 a          217 c          207 g          389 t
ORIGIN      
        1 tatttttgac tgactctgcc acattttcat tatgtgtgtc actattacta ccgtataatc
       61 tgaacataaa aaacatggtg ctgtaacaaa ttacttcaca gcattgacag ttatagcagg
      121 accatttcaa gcctgatgaa aaatttccca gagagatctc aggttaggtt tacataagct
      181 aaacaggaaa tgattgccac cattcacatt aaatcctaaa tgttttgtgt aacttcatct
      241 acattttatg atcctgcacg tctctgtctc tctcatctga tgaaattcca cacttcctta
      301 gattagagaa ataagttcat gtttcaccgt ttgttgtacc tctacaaggt ttgggatttt
      361 aaatacatct tttaaaagtt ccttcagttt tgattgttta aattctacat actttgtaaa
      421 tttttatgat acctaggggt ttgttattgc tttttcccaa tggactacta atggaagtta
      481 gcctgtctag cccatgtgct agatgctgtt aggataaaac tgcctttgac tttcacacct
      541 ctcaggggac gagtaattgt tgtgttcaaa cagcctgtaa ttgtgatccc gctgcctttc
      601 tcagaacgct tctggctatt agaatcatta aacaactcag cacctgttaa cagcattgta
      661 aatattcaac cctgcttgtg tgcaggttga gtccaatata ggagaaggct tacagagccc
      721 agcctcataa attagagctt ctgacaagtc aattattgtg aaactgggct tcacagtgaa
      781 ataaatgaaa tggtgtgctg ataaaaaggt aggctgtctg tttatagcag agaggaaata
      841 atgactagat gattcaatgc agtgagcatg aaactgcatt gtttttattc tttatctgta
      901 attaaatagt taggtaatac agcctcatgg aggaactcac atacagtgca gtttttatac
      961 tcggatcata ccaacatgcc aaattcaact tgcatttgtg ccagcacatt ctaaatactg
     1021 tctaatgtca tactgtactt ccactaataa ttttaagtct ttctagatga atggttttgc
     1081 tttttattag gggtaaatgt gctgagtgac caagaagctc ctgtgggtgc gctcaaaatt
     1141 atatttacca c
//
LOCUS       KCLA01002271            1126 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36926upu ultra-conserved element locus uce-5155,
            sequence.
ACCESSION   KCLA01002271
VERSION     KCLA01002271.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1126)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1126
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36926upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1126
                     /note="ultra-conserved element locus uce-5155"
BASE COUNT          335 a          227 c          206 g          358 t
ORIGIN      
        1 gcaacatgcg gtaggcaacg gagattgtct ctttcaaaag tgagatgtta gtcttctgga
       61 gttctagcag ttctttcact ctttttgcta tataactcga caatctattt tcaggacatc
      121 agtcatcagc atgcacttag cataatgaac aaaacacaga cataactgtc aaggaaaaaa
      181 aagagatgtt tctacttgaa ggaaagcatt aaatgacttc atagtgcctg ctatttgctt
      241 gttttgagta aagacagata tggtatgata ttcagatgcc ccttttgctg ttgaactcat
      301 ttgttccttc caaacaaaag aacattttgc agtcctctcc gttctttacc tctacacatt
      361 cttccactaa gataaatcat caaatccaaa tcccgggtta atgagtgcca atcatagctt
      421 cagccccttt ttcaggcttg gcaacgagtt ccctgagcct tagcaaacaa ttatcattca
      481 gctactgtag aaattgattc ttgggttgac gagagcagtc ctccctcggc tggtaaggtc
      541 ctgccatggg aagcaattac tgcaagatgc cagctgacag actcattccg tggaaagtca
      601 ggttgtcttg atcctcaggc actctctagg caaattgtat ccttacactc atctcaaacc
      661 tcttacgaac tgttggcttc tatcaggaaa aatggattgt tccctttgtt tctgtggcat
      721 ttgatagaat aaaactggac atcgtgcctg cacaataagg tgatttaatt ttaaaattct
      781 cacaccaaaa tgctgcaata tgataaagaa aaagagtatc ataaagcaat gaagattgct
      841 acttgcctag ggaacagtaa tatagtgcag ctactatgac aaaaagaccc aaattccatt
      901 atcagtggcc tgtctctact gatcataatt ttcttttttt tcagacggtt tgtagtaaca
      961 cttttacatt gctttgacaa ccttcattta ttaaacttga gtttttttaa atccttaata
     1021 ttccaagttg gataatttga aaaaatcaaa gatgttcttc atagctagct tttgtggaaa
     1081 cacctggact gtggttgaga ttttgtctga cactgatgag atggag
//
LOCUS       KCLA01002272             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36941upu ultra-conserved element locus uce-1535,
            sequence.
ACCESSION   KCLA01002272
VERSION     KCLA01002272.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-1535"
BASE COUNT          120 a           75 c           71 g          165 t
ORIGIN      
        1 gtcaggcatt taatgtgtat gttaaatcat ttgtgattac taatgtctaa gtattttgtc
       61 attgccaagc tctcattttc catcagagca attctaattg atttaaatgg cctgtttcgc
      121 cttgctgcac gcatgatcac gtcgtaagtg gtctttagga ctattttaat tgccaaggat
      181 gtttttcctt aagaaaatct ctgtgcccag agcagaacaa attattattg caatctacaa
      241 atacacaaac attgtttttc tcccccctct gcatgttttg ttacaccagc ctctcttgtg
      301 ttttgggggg ctctagtctt aatttatgca aaattaattg atatatcttt tataattgat
      361 gtgctgtaaa attaatgagt aatttatgta attagtcaat taaggataat tccagcatat
      421 gttcaatatg c
//
LOCUS       KCLA01002273            1008 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36957upu ultra-conserved element locus uce-3723,
            sequence.
ACCESSION   KCLA01002273
VERSION     KCLA01002273.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36957upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1008
                     /note="ultra-conserved element locus uce-3723"
BASE COUNT          185 a          259 c          289 g          275 t
ORIGIN      
        1 tgtgtttatt aaacccgggc ttgctcgctg tcactgctgt cttcggggga ggatatttta
       61 attggacacg ttaattgggg tctgaaggct tctcctctcc ctgggtgact gctcgtgagc
      121 gggtggtgga gagcagaacg taaggcttcg cagcactggt cctaggacgg ttccttgtcc
      181 gttcggtggg gcgtgatgtg ctgagggctt tcctgaggac cccggggcca ggctgaaagc
      241 atggctgcaa agcagagagc ccaggccgcc tttagactct ctcccatgtt acctgctccc
      301 ctgtcacctg catggagaaa gggaaccgtc aggttgtgtg gagatgactc ctctaacctt
      361 cccctgcgct agcacggcat ctctactctg ttttccactc tctttggcct aacctttgct
      421 tgtgatgcgt tcgagcatgt agaaattaag gggcttttgc tcttaacttt ggtagttcaa
      481 aagtggggca cagatgaagt tgctgcttgg ctggatctgc tcagtttggg agagtacaaa
      541 gaaatcttca tcagccatga catccgaggc tctgagcttt tacatctgga gaggcgagac
      601 ctcaaggtat ttcctttgtg ctacttttct gctcttcacc tttttctttg accaaacaac
      661 ccccgacttc tcttctttcc ccgcacttgg ttcgtgcttg tgccttggct tccaccgtgc
      721 ccgtacgcga ggaactaaca cgcgctggcc tttcgcctga gtttctgggg agctgccctc
      781 tgctcgcgac cggtaacccc cctgctcccc tcatttggct ctttgcactc tgcctacaag
      841 gggggcatca gaggttgtca gaacacagga agagcatggt tgatgccgtc agggtagtgt
      901 cctgtgatct ggaaggggtg cccgttgtca ttcagcagga ttgagaggga gcagatgagg
      961 gtggtgagaa gagcgtggag tctaggcagt gcagttagca gcctcagg
//
LOCUS       KCLA01002274             199 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36973upu ultra-conserved element locus uce-5211,
            sequence.
ACCESSION   KCLA01002274
VERSION     KCLA01002274.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 199)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 199)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..199
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36973upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>199
                     /note="ultra-conserved element locus uce-5211"
BASE COUNT           67 a           37 c           32 g           63 t
ORIGIN      
        1 tttctctttt ttgtggtgaa ctattctatt aataccaatc aaattgagaa aatgatcaaa
       61 tgaaattgca ttttgagaat cataagctgt gtaatgccta ttctgttaaa ttgaggcccg
      121 taattgcttc tctactgaaa agacacaaca aagacagcaa tcatggcatg tcattatccc
      181 agactagaaa accggcctt
//
LOCUS       KCLA01002275             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 36989upu ultra-conserved element locus uce-4829,
            sequence.
ACCESSION   KCLA01002275
VERSION     KCLA01002275.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="36989upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-4829"
BASE COUNT          273 a          160 c          174 g          239 t
ORIGIN      
        1 ttgagagcac tgctgcactc aaaataagct catccagcca tgtgtcattt ggggtcttac
       61 tggtgtagtc aactccagaa aggagcacta ttgactgcag gtgacaagag acctcactct
      121 ccagtgttag ggtgacctca tgaaagttag atagtcttat tattctttac ctttgcatcc
      181 tgatgacatc tgctggtttc aaatccattt cctcatcttg ttcagtgaaa tgaactcttt
      241 ttctctttaa aacagtttgt tacagtttgg agtgagtgag ttaacttaga aatcttgtag
      301 caggaactca aaatttagtg atgtaagcaa tagatagaaa tgccatagcc actgaagaga
      361 agacatgcgg cattgcttac ttaaagcccc atcctgtccc cccaaggaca atagctgcta
      421 ccaggatggc accagcgatg gagcctatta taagattggt ggcactagga cctgtgataa
      481 aggattatgg taagagagat gtaagaacca acaactttat tcacattaag tgaagcaact
      541 gaagggtagt caaacagttc aaggaacata gcacacaagg tgatgtgtct acatgatttc
      601 agcaagccca acttacagta agaacaaaca aagctgctgg tccctgcact gtgctagatt
      661 gacttatatc atagataaaa atctagtgtt aattctgttg tgacttactt cattatctgt
      721 cagctcagaa cactaaggaa ttactaagta tcttaaagaa caaagtatta atgctgtaca
      781 ttttgactac agcaaaagga aaaaaaagtt aactttttta gtggagatcc tgaaaggtgg
      841 cagata
//
LOCUS       KCLA01002276             712 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37003upu ultra-conserved element locus uce-3043,
            sequence.
ACCESSION   KCLA01002276
VERSION     KCLA01002276.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 712)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..712
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37003upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>712
                     /note="ultra-conserved element locus uce-3043"
BASE COUNT          177 a          177 c          160 g          198 t
ORIGIN      
        1 tcctgacaca gggaggtgac aggcatgcca ggcagagcag aagaccccag cagccgagtg
       61 ggtcggtctg ttgccgccgc gatgcagtgg ctgacaaagt aacctagata tccttttcct
      121 ttgtgtcact cctagctgct aaaattagta cgaagagaca cagaaagctc agcggagtct
      181 tcccagttta tcctgaggct catcttttta gatcttctta gttctttaaa attgggaggg
      241 aaggaagtgc tttcactccc cgtggccgtc gcgactgaac taccaccgtc tgcgccgctc
      301 ctacaacaga gaggagctca ggacttttca aaaacacaga acccccgaat ccaatcaaat
      361 tgcaaatttc cctgtatttc acaatatcct aaataaacat gaacagcgtg catttctctt
      421 tctggcatca aatattaatc tggccgtggt gggaaatgtg ctttccatct tgtgtgcgct
      481 cacattgggt aaacacttgg gagattgcta ttccagacct ttcattctct cccagagtca
      541 agagcatgac aaatttttct cctaattaca cctgccactg tttgccttct aatactgtaa
      601 atcctccatc acatagtttt tcaggttcag gattaggttc ctttcctgtc atacaaatga
      661 tgggagcagg gagccgtagg gatgcttagg gtgggctgtc tcttgcggcg tt
//
LOCUS       KCLA01002277             416 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37019upu ultra-conserved element locus uce-1143,
            sequence.
ACCESSION   KCLA01002277
VERSION     KCLA01002277.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 416)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..416
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37019upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>416
                     /note="ultra-conserved element locus uce-1143"
BASE COUNT          127 a           71 c           99 g          119 t
ORIGIN      
        1 gcgtatcccc tgatcgcacc tttaggagat tatcccatca ttaaatattt gtaggataac
       61 aggagaagcc taatttagtt tttgtttctt tttctctgtg gtttaatcac agatgaaaga
      121 gactaatagc actacagagc tttctggtga tcaaaggcca atcaatcctc tttgtggagt
      181 aattaactat ttgctaaact tgcagaattg atttccattt agggctaaga gagagggttt
      241 taaatgaaga ccgatttacc aggcgtgagg agggaatctc agcactgatg ccaggagata
      301 ctcagagtga tgaattggag cctgctaatt ggaggatgaa aaatacagct ggaatctggc
      361 cccatttgct cctactttgg ggaaagacag gaaaagggaa ataaggctga gaatct
//
LOCUS       KCLA01002278             296 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37033upu ultra-conserved element locus uce-3744,
            sequence.
ACCESSION   KCLA01002278
VERSION     KCLA01002278.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>296
                     /note="ultra-conserved element locus uce-3744"
BASE COUNT           96 a           57 c           60 g           83 t
ORIGIN      
        1 ttttcatctt aatcttacag aggagaagag atttctgtgg tcttggtaaa atgcaatcca
       61 cgccaggctt ggactagtct ggccacccag gttttccttt tcatatatct gatagatgtg
      121 ttttgacaag ttatattaag tacaaagcag gccaccagag cagcatgtgg agttgatata
      181 gacagagaca gaaaggcaaa taacagtatg aacacatttt tgtagatatt tgccataact
      241 gagtaccctg catacatcat atcaccacat aagaaacagg gcctgaaaac ttctga
//
LOCUS       KCLA01002279             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37049upu ultra-conserved element locus uce-5528,
            sequence.
ACCESSION   KCLA01002279
VERSION     KCLA01002279.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-5528"
BASE COUNT          246 a          146 c          173 g          254 t
ORIGIN      
        1 gggctgttta gccttctgag cacctaaagt tggctctgtt gtttgcattt cataggaaat
       61 acttttcaaa gtaaacaaga ccctttagtg aattatttag catacaaata aaccagcaaa
      121 gaagcctaag taggccaata tgaactaact ggattgaaat attcatctgt aaataacttt
      181 tcaatctgct gctttcacgt acaaatacta catggaacat tagacacaac tagcttctag
      241 ggatatttag gctcactgga gagcaatttt tatgtctact ggcatctgtg ggtagtgata
      301 tggactgact gctaatataa ccaacataaa atttatgtga acgctccctg caatagcagc
      361 acgctgtcag acagctggtg gttgatgcat agcacatgcg ggttttatat gcgctgtgta
      421 aactaacctt tgcaataaag atttagcagg tttattagtt taggaaatcg ctataattaa
      481 ggataattca taatggccgc ttactcgctc gatagctata gctgctttaa ttttgattct
      541 gtttctttga ggcataagta agtgtgctga tgtcttctgc acagatgtga cattcaacct
      601 gttcaagttg gttgagttcg gcttgtgttt taatcaaagg aattagcaga taagcccata
      661 aaaggcgctt tgcttgaaat aaagtagcaa gaaatatggt ttgcaagttc tggaactcta
      721 ctgctagttt ctgtttagga tgaggaggca gaatgcagat gtcttccaca aaaagcagca
      781 cacattatgg tcacaggtct gacctgagat cgcagatct
//
LOCUS       KCLA01002280             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37094upu ultra-conserved element locus uce-1471,
            sequence.
ACCESSION   KCLA01002280
VERSION     KCLA01002280.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37094upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-1471"
BASE COUNT          211 a          246 c          166 g          240 t
ORIGIN      
        1 cccctccctg aaagatagct atggagtgga acatgctact tttaatttgc agtaacacca
       61 cagcagaggg atgcaagaat gactgctttc ccaccctccc ttccacaaca agccgggcca
      121 catctttccc tttccacctc tgcctccttc cacgccctct tcaacccctc ccattttaag
      181 ctgagtccaa gacaacacat tatctcaact ccccccagcc caaactaatc aaaggatgaa
      241 gggagggctc tttagaacga tgcctttgca accctctcct cttctgcaat aatcaggtga
      301 attaatgacc ctgaagttaa agtgagtgct gatactcagg cgttgtgcag cgtaggggag
      361 aaagccttca ttgttttcga gcaggaggcg ggcagcagca agggagattc atggatggag
      421 attgaatatg caattttctt tcaccttgcc aagagctgcc cctgggctgt gcctggccta
      481 aatttttttt tcttcttgcc atctctgcct tatccggccc tcccacctcc cttccattct
      541 ttccagaaaa ttaccttcaa aattgatttc cacttttaca aacaaatata atgggaacat
      601 gagggggaaa aaaaaatctt gggctgtgat gaattaaggc tgtcaggtgc ttccaagtct
      661 cctttgtttt tgttttactg cccgttaggt tctttgtttt tccagcaact gggaatagtg
      721 tccctgccca cacagtctct atggtccagg gctaccatcc caggacatgt ccatcatcta
      781 atgccgtcac tgtgctgtcc cttctctcca tcactgtgat gcaaacagcc actgcttaca
      841 aactgccaca gccattcaca cca
//
LOCUS       KCLA01002281            1202 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37109upu ultra-conserved element locus uce-6166,
            sequence.
ACCESSION   KCLA01002281
VERSION     KCLA01002281.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1202)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37109upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1202
                     /note="ultra-conserved element locus uce-6166"
BASE COUNT          373 a          223 c          218 g          388 t
ORIGIN      
        1 aaaataacac cccgatgcta tcagttattc ttatttgcat gtaaactctg atattaggat
       61 tcatttttaa gcatgtcagt ttttagctcc taattaattg caatgacaac actgtgtgtg
      121 tctgtttaca gaaaagctgc tgttatggct gagtttttaa ttatattaaa tattaatcat
      181 ggattgaaat tggaaacttt aaattattgt ttaatgatca gtgatcaaac gcataatcaa
      241 gataaagaaa attaggatgg cagacagcaa catcacaatt tgaattttat gttattattc
      301 ttctgcctaa ctaggcactt ttcttgagta tctgaactat tttgcctttt aactgtgctt
      361 gctgttgcta tagtgatggc ataatttcat aatggtctaa aaatgacagt ggcatagata
      421 tgacagatag gaattaattc actaacaagt aattatgtag cgaaatgttg actgccatgc
      481 agaaggtgca ctgtgacaca tttactgttt ttcagaatgg cagtaacatt agcgttggtc
      541 attagtggta gacatctccg tacagtgttg gatacagact tatatgcaga cctatttagt
      601 tacctgtgtg acagccttgt tcaggacacc agaaacagct gtcctagcct gtatgagcca
      661 aaataattag gcctgtcatc ttcttgctct gatttcccct tcaacctgct ccacaaaatg
      721 caaatatttt gctttcattg tcacattcac cttgacatgg atattgcttt ggcgcataac
      781 tggatgagat gactcagaat ttgcattgtt cattctaata aatttgcttc ccctctaccg
      841 catggcagga cccatcagat aaagtctccc agagtgtcat caatcaacat cgctgacaga
      901 cggcttttgc cttcatttgt tacatacgag aacatgctta attatttgtc ctgtaattag
      961 ttgggaaaat gtcaggaaat gtcaactctc tgttcactct ggaagggctc tgcttgaaag
     1021 tcacaatgac tgaagtgtca ttaatgctgc ctaacaagac gaggatcagc tggggaaaag
     1081 tgaaagcttc taaaaaagta atcattgcga gttaaggaaa actgcaaatc agcaccaata
     1141 ataaaatatg aatcctatta gcaaacactt atatttttca tctgctactc cacgcaaaaa
     1201 aa
//
LOCUS       KCLA01002282            1077 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37124upu ultra-conserved element locus uce-3542,
            sequence.
ACCESSION   KCLA01002282
VERSION     KCLA01002282.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1077
                     /note="ultra-conserved element locus uce-3542"
BASE COUNT          322 a          184 c          202 g          369 t
ORIGIN      
        1 acatcagtaa agagcccaaa tgtcagcagt acttccccca ccatgggtaa tattttttct
       61 gattcgttct catttacata ggcttcattt agaacatata tgatactggc taaattatga
      121 gaattgaaaa gaaatatggc aaacactgtg tgtaatttcc tgaggttggg aaggtattag
      181 atctccagtt cataatagac actgttctat tgtatttact gtagggcatt tataagggga
      241 taacttaaga gaaatcattt cctacccctt ggacttggaa atttacagta aatggcaatt
      301 catcttttag aaattgcttc aacttagtac tacagttggt gccagagatc tgaatgcttt
      361 tgcctaaatc tctgtaatcc aataagcttt tgtgtttagc agcttgtttt gaaacttgta
      421 tagcacccca gcctgtgtct ccttatgttc ctatacaggc aggtgagtgc ccgagggcct
      481 aattattatt caagctagga ggccttcaca gccccaacca gaatgtaatt tgtaattaac
      541 tgtcatttac ttcggtctgc actgacttgt tgttcaaaag acaatgtatc tgagctggtc
      601 actagctgtc tttgttgtgg atatgatgtc tctcagatct agttgcattc ataatgttta
      661 gaatgaatat ttgcagtctt ggaaccaaag taggaggggg atttcaccga tttttcctaa
      721 ataaattagt tatatgcaat tatgagtact taggaacgta aaataaagta tttgatactt
      781 cgagatgagt ttctgcgctg aatagttaag ttcatgtgag atgtatttaa ttgaactcca
      841 ttagggatac agacgttata atttgaacgt attataattg tgatctgtaa aattaaaacg
      901 catatttaag ctctggaaat ttttcttaat tcattttgga catcgcaact gtattttctc
      961 actgaaccag ggccactaat gtattctgtg aatgtaccca tatcatgaat ttgtaattgt
     1021 ccccatggta atcttttgtt agccgaaata aacaaaagaa taatgcaaca tctgcat
//
LOCUS       KCLA01002283             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37140upu ultra-conserved element locus uce-7667,
            sequence.
ACCESSION   KCLA01002283
VERSION     KCLA01002283.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-7667"
BASE COUNT          141 a           80 c           90 g          142 t
ORIGIN      
        1 aaaaaaaaaa gaaaagaaaa aaaatttgct taaattagtt ttttttcaca cctgcttctt
       61 tcttaattag ctcgtagtcc acatatttca gtcagttgaa ctctttagta tttattcaag
      121 catacttgac attaacatac tgtttgatgt ttgatatcct gagtttttaa tttaaccaca
      181 tgacaacaaa tggtatttat gaaatatcag tgagctggaa aaataccctg tgttgcaggc
      241 gtgcgctgca gcgagctcaa agctgcttcc tttcccggtt ttaagaaagg ttttaacaca
      301 tgagagggaa cttgtgcctt gtacccagag ccctaatttt tatccttagc aagatttaca
      361 ggtcgccagg ggtgcaaaag ctaccggggt ctgggaagga acacagaaat tcttggtcag
      421 tgatgtcaga agttagaagg ttcttacaaa atg
//
LOCUS       KCLA01002284             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37156upu ultra-conserved element locus uce-3937,
            sequence.
ACCESSION   KCLA01002284
VERSION     KCLA01002284.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37156upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-3937"
BASE COUNT          323 a          174 c          151 g          207 t
ORIGIN      
        1 aacatatgat ggagcatgca gaggaaaaac taaacattca acataaatca tttttcccca
       61 cacaaactaa aaaagcctca tccctcccct tccaaccccc ctaaggaaat aacattagcg
      121 ctaatttcta taatgtcagc caagatatgc acaagcaagt aagagaaatc aaaagcattt
      181 gctaaaatgt ttgtaacaaa tacttatgta caaaaaaatt cacaaaagac tagttccctc
      241 ctgaagcaga gcacatggca gttgacactg gaacagatat aaccactggc tgggattata
      301 aaccacgtac tgatccagag gaagagaaag agtacatgta gtggtggttt ttgttttgaa
      361 catgaacatt taccaaagtt tggcaacatt atcttttaaa gtatgcaaat tatgtaaaca
      421 agaggaacat ttcaacttga tctacatgca aaacttcatg tcatgcaagg acaccaagca
      481 cctggatttc tctctcacag acagagccca tgatgtgcag cactcagtcg aaggaacagc
      541 tatggcagac aggtgctcag ctgaagtagg ttcagacaac ctgcacttcc cactgctgat
      601 tataaaacaa tctttctgaa tagaaaaatg actatacagg aaagatgtac ggtcctaaaa
      661 aatctagcaa atgtttttct tccagccaat agtaccattg cagaaaaggg aagggatgat
      721 ataaagttgt aaaacatggc tcgctacttt tatatcacac aaatatatca agttaccatc
      781 tgttacaaat catgatatgg acaaatctag aaaagaaaaa aatcctccag gcaaagactg
      841 gagaactgca agagg
//
LOCUS       KCLA01002285             960 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37172upu ultra-conserved element locus uce-791,
            sequence.
ACCESSION   KCLA01002285
VERSION     KCLA01002285.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37172upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>960
                     /note="ultra-conserved element locus uce-791"
BASE COUNT          284 a          192 c          178 g          306 t
ORIGIN      
        1 gaggaagtgg agatgccttc aacatagaag actgcaggag gactagcttt ttttgatggg
       61 cttttaatgg tttatttcat ggctttattt agaaaacgag tcaaaccttt aaaatgagac
      121 cttcctgatt tttgcactgg gctggtagtg taggtcacaa cagatataca tagaaaaaca
      181 aaggaggcag aaatgtgctg tatggttgga ctccaaagga aagacctgga acatttcttc
      241 tttactttct attccttgca gtaattagcc aaagtaaaat gagtattagc ttatgcttaa
      301 ctgtctttcc agcatgctac tctgcattga cccagtagtg ctaaaccaat tattttttga
      361 actttatggg tttaaataat cctctgcttt aaagctccct ctacccctca gcttcttaac
      421 aacaggctga ctgccctaaa tccttttctt acactttgta gctttttaag caagacccct
      481 ctttaagtag acataatccc ttctcagtag aaaacatgaa agaccttgaa caaatcaaga
      541 tttctccatg gagaattcag ctaatcctgt gcttagctcc taacaaggaa atccagctcg
      601 ccaccaagca ctccattact agaactaatg cctgacttga ataacaagca cattattgtg
      661 ctttaattgt agtgctgctc tgtcacatgg agaaattgga gaagaacgtg actcagttcc
      721 tccaagaaag acaggtcacc ccttcttgtt gttcaggttg ctgtgattta aaagcgagct
      781 aaattaacta ttaatatgga ctgcacatgc ttcagattag gtgaaacagc tgcattgtag
      841 ctctctagta ctatttatta taaaacaagt gctgttacac tgcattgcta ttctccttta
      901 tgtaggcttt tgactattgt gaaatttata ttctgaagct tgaagggata taattgtgcc
//
LOCUS       KCLA01002286             535 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37188upu ultra-conserved element locus uce-2399,
            sequence.
ACCESSION   KCLA01002286
VERSION     KCLA01002286.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 535)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..535
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>535
                     /note="ultra-conserved element locus uce-2399"
BASE COUNT          147 a          122 c          140 g          126 t
ORIGIN      
        1 tggtcctcga gggaggggat gaactttcaa ggctggatgg gaaggtctgt gatgctcaaa
       61 cccaaggggc catcccagga gttggttcta gtttgtccca tgaggcccag cactgagatt
      121 agaggtgggc cgagtgctat gggaggacta gagctcaggg gcttccctgg cttgcaggat
      181 atttcatcct ccgtcactac aaagcctggc cagatctgca tttgcagcag cccacagaag
      241 ctgcctctgt tgtcttattt ttgttatttt tgagaggata ttttagtgct gagcacattc
      301 cctcctgttg ccatggcagc cgtgacaggg gttatatacc gtgagaaaaa tagcaaaatt
      361 aatgagtgag tgaaagtgca gccgagagaa aaacaaggtt aaaaaaaaac ttaaaacagt
      421 aataaaggca atctcctaat aatttggcag caagcgtcct gtagacaaga caggcaacaa
      481 ccattcgagc catccagccc caacatcgat ccaagtgctg gggctgccca ctctc
//
LOCUS       KCLA01002287             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37204upu ultra-conserved element locus uce-2465,
            sequence.
ACCESSION   KCLA01002287
VERSION     KCLA01002287.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37204upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-2465"
BASE COUNT          197 a          270 c          212 g          176 t
ORIGIN      
        1 cctgcaaggt ttagggcaga gtgaaggctg ctgaaccccc agccgtgagg actcagcagg
       61 agcagctcca gaccgccgca ggctccagca acgaggtcta gagcacgaac aatcctgccc
      121 gatcctgtcg tcagagcccg gagccctttt cctacctcct gctccccact ctccccgttt
      181 gtttccaacc ttctaaacaa caaacccaaa ccatcgtggt gatgcagcgc cacagcccag
      241 ggaaggtccg tcagcaccag tagagccctc gatccgaact tccctcacgc cacgggcagc
      301 tgcagcttta ccaacacagt ctgaagccgt tttgctgttg gtccccagct cctacctatt
      361 cgagtattgg caaatacatc agctagtgac ccactggtcc ctttgccttc tccatgggaa
      421 agtgtagaag atgctgatga agatgtggat gacccctgaa tagatcggtt gatccaagac
      481 tcagcattct gtaagctctg atgcaatgca gcagaaagag cagcttggcg ccttagcgag
      541 ccctcgtcct cggatgcgga agacgtgtct gtgtggaagc agaaaagaaa atctagctgc
      601 ttagggaaaa gcacatcacg ctgaacatgc tcgctccggt tcgcacacca acggcacagg
      661 ctgctcacac caggattctc gtgccacagg ctgcgtcaaa ccaggtgacg gcggccaaac
      721 cgcaagtgga agcagcagac ggctcccccc ggggtgtttt ccccctgttt gaagcacacg
      781 aaggattcgc ctccgttccc agttgttaac tcagctctct ctctctcgtt cctctgccct
      841 gcagcacagg gatct
//
LOCUS       KCLA01002288             356 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37219upu ultra-conserved element locus uce-2964,
            sequence.
ACCESSION   KCLA01002288
VERSION     KCLA01002288.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 356)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..356
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37219upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>356
                     /note="ultra-conserved element locus uce-2964"
BASE COUNT           93 a           61 c           95 g          107 t
ORIGIN      
        1 agtacgttgg gaccagcaag ggccttgatc aacttcagta ggcttccgat caggccttta
       61 atggctcttt gcgtgtggac tggtgtgagt aggctgagaa gggatgtggt ctatggcagg
      121 atcactgcag agaaaggatg gtgctttact gggggtggaa aatggaattg tcaccgtgga
      181 atgaatgaat tgtacagttt ctcttttgta acccagggaa taattaagat agatgggtag
      241 atgaattagc tgtcctgcaa ggtcaaaagt ggattgcctt attactctat tatttcactg
      301 ttgtggaact atcaccacta acgccttttt catgatattt tgtacatcgc accaaa
//
LOCUS       KCLA01002289             793 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37235upu ultra-conserved element locus uce-4320,
            sequence.
ACCESSION   KCLA01002289
VERSION     KCLA01002289.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 793)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..793
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37235upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>793
                     /note="ultra-conserved element locus uce-4320"
BASE COUNT          192 a          159 c          223 g          219 t
ORIGIN      
        1 ttctccagcc tgtcctcact gggtgctcct cagagagctc tgtgtgctgg ttgtttaagt
       61 cagcagcact gagcgatgat gcacaacaca aacgcaggat ttactgaaaa tcctcgatgt
      121 gtaaacaaaa gctttttttt catgcacatg tgtgtttgga gctgatattc tggaaaaaat
      181 tagtttgttg tcccaccaga ttcccttatt gaacaatatt ggcattaaat aaaagagctg
      241 aatcataggg tgacttcttt atttcttctt actggctctg gttgtatgtg atcatgtgtc
      301 aacagagcat tcattgggtt agtcatttct ggaccagtgt agggtcactt gggattcaca
      361 gggctcggat tataccctct cttcacagca atgccaattg taggccttat acagatgaga
      421 gcactgagtg agaaataaag tgcatggtgg atgaaaggct taactgaatc gctttcagcc
      481 cattgttagt ccaggggagc ttagcgggga tgagagggca gcagcccgct ttgaaatttg
      541 cttgaacaag tgaataggag ctccccataa agcagcgcgt gaaaggagcc tgcctgtttt
      601 ttcctgccgt aacaatagcc tgcgcaggct gtgagagttt ggggaagctt ggctgattaa
      661 actgcccgca gctccaggtt ggggggcggc ggggagggct tgcagatggt ggagcttgca
      721 aaggaggctt tcctgctggc agaagcatcc ccagagctgg gttggtttgt gagaggtaag
      781 ctggcagttg agg
//
LOCUS       KCLA01002290             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37251upu ultra-conserved element locus uce-4189,
            sequence.
ACCESSION   KCLA01002290
VERSION     KCLA01002290.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37251upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-4189"
BASE COUNT          224 a          141 c          109 g          175 t
ORIGIN      
        1 aacaggcata gctgcctgtg ctgcattaaa agctcagatt gttgccttcc agagaaagga
       61 agagacaagt ctgcaaacca acaagggatt ccaagagact tctatattag cctgtaatta
      121 aataatagtt catgttgctt tcttccactg ggaattacat ccttttcacc tttcctctgc
      181 taaagcagag acatccatta cgatgagtag ctacaacact tgtcagatcc aatcagctcc
      241 aaacaactga agagtaaccg acgtgtgctc tcttaaagct tggtttcttc tcccccaaaa
      301 gcccactgtc ctttcacgtg catgtaacag tcagaagaga tcacatcaca caatgaagaa
      361 aaacagaagc atatggtact aaggggcctc tacaggagat gtctaaaatg ccaaggctca
      421 cacataaaca aaatatatgc aaaaatatgt gttcatatag aatgccagat aggagcagat
      481 gacaaaaaca gcatagaaag gcaaattttt gcaatcatta ccttgatctt tgattgtttt
      541 ttattgctat ctaaagtggt gtacaaaaaa tagcaatcac acccacttaa ctatacatga
      601 cctgttacaa agttcacttt tccagtataa tatcaagtca catattcat
//
LOCUS       KCLA01002291             444 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37266upu ultra-conserved element locus uce-4848,
            sequence.
ACCESSION   KCLA01002291
VERSION     KCLA01002291.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 444)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..444
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37266upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>444
                     /note="ultra-conserved element locus uce-4848"
BASE COUNT          144 a           73 c           74 g          153 t
ORIGIN      
        1 ttcatctacc tctgcagatt tctcgcgtta cacacaaagc atactttaca ttttacaaaa
       61 ccaaggaaat gaagggaaat atatctgtca ccaaagaaga catcagacct ttaatagctg
      121 aaatgatggt tatttttaga tggaggtcta gtttaactta cttacattaa gggtctaatc
      181 tctcctgaac aatagctgtg ttagcttgaa tacattgtga gaaatctgtt ccattaatta
      241 agtgctgcct gtactactcg gatttgtagc aaatgttaat agattttttt tcttcctctg
      301 ttggacaatt actttatttt gccaagttgc taatggatta aattgaaaag gtccgtgtgt
      361 taaaaaaaga ctttagcttc aaagtcctaa gaaatgcctt gcatacaaca gtgaaaaata
      421 cctgtatatt tatattatta atgg
//
LOCUS       KCLA01002292             832 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37294upu ultra-conserved element locus uce-666,
            sequence.
ACCESSION   KCLA01002292
VERSION     KCLA01002292.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 832)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..832
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>832
                     /note="ultra-conserved element locus uce-666"
BASE COUNT          292 a          153 c          125 g          262 t
ORIGIN      
        1 tcattttaat cactccttta tacctatttt acataataat ggcaaagtat agtttaaatc
       61 ccctttccct agatattatg tacctatctt atacttatca acgtgtaaac ttaaagccct
      121 attaaatgtt ctataagaaa aaaaatgtaa aaatattaac ctctgcttca atgtacagtt
      181 tccagaatct gccagaactg gggaactggg caacaagtcg ttcataggtc ttccgtgctt
      241 tgtctatagg ttgattctaa aaattgaaaa tcaaaacagc atttacaata ttatgattta
      301 tgtaaatgaa tacgctgatt ttactccaga accaatagtg tgagtggacc atagataagg
      361 aaatgtaatc ctatgtcact aaacctgtgc ctctcgaatg agaatgctcc aagcgtcaag
      421 gtcatatgga ttttcttcta gtttcttttc agctttcttc actttttctg gaacatattc
      481 tgcagcctag aaaaattaga aggaagacaa aaaaaatcag aagtacagtt ctaaaacttc
      541 cgtcccagct acaggctaac aaaaacattc tgacaacgga atgctccaga tttgaagagt
      601 tactaaattg gaatttatct ggaaaacaag ttatcccact aagacaatgc cttccaccac
      661 aagtactatg tatttattta tccagcaaaa agctaaagga aaactactaa atgttcaaaa
      721 ccactaaatt aagagtttga cagagacatc attgtagtgt gattttttaa tggtttgacc
      781 cactagaaac ttctgagatg caaaaggtaa atttgcatta atttttctac ta
//
LOCUS       KCLA01002293             809 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37310upu ultra-conserved element locus uce-4560,
            sequence.
ACCESSION   KCLA01002293
VERSION     KCLA01002293.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 809)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..809
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>809
                     /note="ultra-conserved element locus uce-4560"
BASE COUNT          241 a          152 c          139 g          277 t
ORIGIN      
        1 atttgatagt tatgagcact ggctttcaca tcctatcctt aataattgtc tttatgactg
       61 aaacaagatg gtttggtctt ttcgctgtgc tggtcatgtt cttctcctag taaaaagaat
      121 cacttcattt cagacaccat tggaggaatt cccaggaagg taaggcacaa ggacacagtt
      181 gcttcacggt agctgctctt ttccctcacc caagatgtgt ttcattccta aaacatcctt
      241 aaataaacat ttaccttttc tttctgtcaa actaaggaac tttgttagca acaccgtagg
      301 acaggagata actatagcag tctctaattg ttaggctctt gcaagggctg agcctgatca
      361 ttcactgaat tgttgagttg atgggattcg tgtagctggt tataaattga taatctaaat
      421 taattcattc aagcagaaat cgattttgca actccttgag agcttgtaat aatgcttacc
      481 tcctaccgtt agctgcattc tctgtttcat aaagctggtc ggaaacagct ggattcaggt
      541 gacctgctag ctcattaaat ctgttacatg ttccttctgg taaatgatat taagctgaaa
      601 tgtccttgcg tagatttttt tcctttaatt ttatgacaga aataacctaa tttgtaacac
      661 aaaataacaa tctccttgga ttactttgcc ttgttaaaat attttatgca tttttcattt
      721 acacaaaggt aatggaaaaa cacttaaact atctgttatt taaaccacaa gagatatgtt
      781 actgaaagtc tgatagctac aaaaatgat
//
LOCUS       KCLA01002294             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37325upu ultra-conserved element locus uce-1825,
            sequence.
ACCESSION   KCLA01002294
VERSION     KCLA01002294.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37325upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-1825"
BASE COUNT          198 a           80 c          116 g          167 t
ORIGIN      
        1 acgtgcagat aaaaggaaat aactatggat ataatcttgt tttcagaatg gtttggtatg
       61 tctgatgaag gtgacaaagt agacggaaaa tgtatgaata tcatagatag aaaaatgagg
      121 tcaagataat taaaagtctt tctgtctccc agagataatc taccttgctg ctcagtggct
      181 gtcacagtca tttcagggtt cacctatagt gtgcgatgtg tatgaactta attaagtact
      241 aagaggtaat gaattggaat tttttgctta gtactatttt tcttcagagc atgcaagcca
      301 ataaatcgtg caaagctgtc aaaaggaaat acctacttca ctagtgatgt ggaggaaaac
      361 agatgccact tattcaataa agtaatatcc acacagaaga aaaatgttga ctagatacct
      421 cagagtcaaa gttggtttga aagtttgtca atacagaatt ttatggccgt gaactaagga
      481 tgaaatttag ctgaacaagt gaattaaaat ttcaggtact ctgactggtg gcacagtaaa
      541 cataatggaa ccattattta t
//
LOCUS       KCLA01002295             970 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37340upu ultra-conserved element locus uce-6543,
            sequence.
ACCESSION   KCLA01002295
VERSION     KCLA01002295.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37340upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>970
                     /note="ultra-conserved element locus uce-6543"
BASE COUNT          294 a          175 c          167 g          334 t
ORIGIN      
        1 catagagggt taaacacata caattttaat ggctattgtt cacatcatgc ctgtgcagcc
       61 attctgtgtg gagaagtttc tttaagtgag cacttagggt tagaaaaatt ctgccttcgt
      121 tagggtatat gtgcatataa cttggagata tatctcggca tcctaataat tgcctgccaa
      181 gtagacaaag gctccagaaa tgggcattca ggttccgtgt gctgaactct tcttgtgagc
      241 agcctcagac cctcatccct gctgaggaga ggctctgtgg tacgtccatc tcaaatctta
      301 ggttctgtag gttgccaatt gccacatact ttgtatgaga tttcaaattc catcccttgt
      361 caagacttca aacatggtct tttagatatc aatcaaaagc acattttcta ccctgtcctc
      421 atttacattt atctaatgct taaggtcatt tgtgatcatt tgagtgtatt tcagcatatg
      481 gaatcagtga ataatagatt tcagcctcat gctgtgagta aagattgtgt ttttacaaga
      541 catgatgttg tttactgggt gttaataatc actaattaat aaacatatct ggaaatcata
      601 gaacattggg ttttaaaaag taaaaatgtc aagtgtttaa ctttttgagc acagtagcat
      661 ttggggccct gtttgcatca ataaaataat tacattacaa aataaagtaa atatcaaaac
      721 attagccttg ttatgatcaa catacatttg atatttagtt ctacattctt agaatttggg
      781 catatttctt gtaactgtgt taaagtatca taaattagta ttcagatgac tctctaatcc
      841 ccaaaataat gataatctca catttctcta tcttataccc attaatagtt gatcacctct
      901 gccaaaatta acattatgct ttggttattg agaagcacta atggttgtat cagtccttcc
      961 cattcagtaa
//
LOCUS       KCLA01002296             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37355upu ultra-conserved element locus uce-4249,
            sequence.
ACCESSION   KCLA01002296
VERSION     KCLA01002296.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37355upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-4249"
BASE COUNT          121 a          113 c          131 g          103 t
ORIGIN      
        1 aggaaaagaa tgagggaagg tcagtcaatt atgtgtggta atcaccgtaa gcatattatc
       61 tgagacacag atgtcttccc tgaccccaca cgacatagct attaacccca cagtagtata
      121 aaaatgggga ggaggaggag ctggtcccct aggtaaacca gaccttttca gtcaagcctt
      181 gtccagcagc ttggcgaagt cgtggcggca gcacggccgc tctcgcgggg agctggccct
      241 gctcacggcg ggcggcgcgg acgcctctcc tcttcaggga cctttctata gacctagtca
      301 tgtgagataa atagttacat catcagaaaa atgagcccgg caaattgact tgcgagatat
      361 ttcaggagca taaacagccc tggaatgccg ggcgctgcct gtggttttat gggaacaact
      421 ttggcgctgc agagtgcagc ggcccagttg atgcattagt gctgataa
//
LOCUS       KCLA01002297             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37371upu ultra-conserved element locus uce-3116,
            sequence.
ACCESSION   KCLA01002297
VERSION     KCLA01002297.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37371upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-3116"
BASE COUNT          130 a           86 c           76 g          128 t
ORIGIN      
        1 ttccgtttgc ctacacatcc tccaagtcct agccctagct tttaactgca gtccctggaa
       61 caagagggga aaaaaatcgt ttatggctta aaaattccaa atggctgatt ttgtgtgtgt
      121 gtgttataag aatgcaccca caacaacaaa aaagtcactt ctctgtcccc caccgtacag
      181 cagaagaata ataaaaaagc tttatatttt tgcagtgggt attcaaagat aatttgatgc
      241 cattgtttct gctacagatg gttcttttta atacaataac actgctcttt gtgcatacta
      301 cacacaataa aaatcgaaag cgttctcctg aataaccatt ttgttctcgc ttgtatacag
      361 gccaacaaaa gctgccgtga ggtaatgggt tctgtttatt gaagccatag aatagaggtt
//
LOCUS       KCLA01002298            1206 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37387upu ultra-conserved element locus uce-3548,
            sequence.
ACCESSION   KCLA01002298
VERSION     KCLA01002298.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1206)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1206)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1206
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37387upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1206
                     /note="ultra-conserved element locus uce-3548"
BASE COUNT          336 a          235 c          256 g          379 t
ORIGIN      
        1 tattgatttc tttctttgtc ttcttaaagt agttagtctt tatagattat aaagccagaa
       61 gggaccattg tgatcatcaa atctgacctc ctgcttaaca caggccatag gctttgctga
      121 attaattcct gtctgaacta gagcatatct tttcgaaagt caacttctca ctttccagca
      181 tatgaaaagg tctcccatga cacctataga cctttcataa tggacagatt ctccccatga
      241 tatggacaaa ttgagttttt cctgggaggt actgccccac tttgagctga taaaggaaga
      301 cccaggaact ataggtatgc tgtgattact tctttcacac tctgtgatgt tccaggagct
      361 tgtgcatctt ctgctttatg agatatactt ggcctagggg agctaagtgg aaggatgagg
      421 gagaagagga ggtgcataat ggtatggcct ccagcactat tatttatgac agtatccttc
      481 cagcaatctg tgcctacata gggtgaaggc atggtttcaa ttctgccctt gaaacatgga
      541 ttaagcaatg ttgctaatac atatttgtcc ctgcggctgt caaacatttc actgatacta
      601 gactctgtag acagcttaat agctaggtct tctgtcaatg ttactgcagc agtgtctcct
      661 ttgctttaag atgctgttca gatttattca ggcaataggt gtagcatggt gcttggtaaa
      721 tagcagcacc tgactgtgta cttgtatcat cactgcttgc tgacatccca agtgaccaga
      781 tgaaatggat agactatgga aaccaagtgc tgagaagaat ccagtgagtg aaggatggaa
      841 agatcatctg tctccttcct gttttatgcc tcctaacaga gttacatgca caatgcatta
      901 ttattctaga agtctctgaa caatagttac catctgcagg ggctgaaaat gtgtgtatcc
      961 aacaatattg aatgaatggt tttattactg ccgttagctt gatgctttac tggtgtcgag
     1021 gtaatgtaag ctttgctggt tttcgtatag tagtatttta catgtgacct catttaattt
     1081 ttctgtatcc tagagagtga aattacctgt gcaaagataa gcaccaaaag cattatggca
     1141 tgtgcccaca cacgacagca atattttgct acctattgaa aagcgaagca caatgggata
     1201 atgaca
//
LOCUS       KCLA01002299             544 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37402upu ultra-conserved element locus uce-542,
            sequence.
ACCESSION   KCLA01002299
VERSION     KCLA01002299.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 544)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..544
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37402upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>544
                     /note="ultra-conserved element locus uce-542"
BASE COUNT          160 a          105 c          122 g          157 t
ORIGIN      
        1 taactgtggg caacaaaaaa aagtcttcat agcagaaaga ctgctgtgag aaattgtgtt
       61 gggagcaagc agcagggtgg acaaaggtga aaataaggga agaaaattaa tctgcatacc
      121 cagcaggcaa tggtctttta tatattcatc tgttttcagc actgaactta gtgagagtgt
      181 gtccatttca tggtgccgtg cagagaaaat gaagtgtgta aggtcattca ataaagatta
      241 aattaaaaac atattcctat agcaccctca gggtccatta gccttgatga gtgtacaaat
      301 actttctttg ttatatgtgc tccatcctga aagggattgt gtgcttctct cattataaat
      361 gtgcacctga aaagattgaa cattatcccc tcttttttaa ctgacctgtg gccaccgctg
      421 ggttcattag tgcagaacat cttttccact ggctgagtct gccctattgt ttgcactggc
      481 cagggtcaag tcaagggcac tcagcctaga ttggactcat ttgtcacagg gtctagcaac
      541 aaag
//
LOCUS       KCLA01002300             236 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37418upu ultra-conserved element locus uce-7776,
            sequence.
ACCESSION   KCLA01002300
VERSION     KCLA01002300.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37418upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>236
                     /note="ultra-conserved element locus uce-7776"
BASE COUNT           36 a           84 c           76 g           40 t
ORIGIN      
        1 gcatgcagcg atgcagcggg gactcggcgg cgccggccgg ctgctcatgc aggaggcgcg
       61 gccgtacctt tctgacgagg acgacttctc agagttaact gacatcagcg gctcgatctt
      121 ctgctggagc tctggaaaaa tcagacagcg tgtgctcacc gccccgctcg cgctccctcg
      181 ccccggcttt gttcgctgga ggccgcggca actcgcgcca ggcccggccc agccgc
//
LOCUS       KCLA01002301             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37434upu ultra-conserved element locus uce-6664,
            sequence.
ACCESSION   KCLA01002301
VERSION     KCLA01002301.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-6664"
BASE COUNT          217 a          199 c          219 g          274 t
ORIGIN      
        1 acacagcatc cttcatgttg ggtaccccat gattagtcct gtctgcttag tactgagttt
       61 acgtagcgtt agcaaggttg ttccttcccc acttctggtc tgtagagcca cttcactttc
      121 ctaaagggct ggttcagggc ttggaacaga aacatccaga gtttggggag agagcaataa
      181 acagggggaa gtgagagaaa gtagttaccc aggtacagct tttctcccgt ggaatgaagc
      241 tcttccataa ctcctgcagt ggctaggaaa ttccttgtgc ttcagaacaa gccggtgctt
      301 taatttagtg cttccccttt tctgtgcctg tttgggaaag gctgtgttta acctccgagc
      361 tgggctccgg tggggagagg gtgcagagga attgatcagc agagggtttg cagagcacaa
      421 atctgtttgg caaggaagtt gctgaaaact gtggagtaga tgctgcagcg agtaccttta
      481 tgattgattt ccattcaagt cagactgact gcagtgtggt catttttcta acccataact
      541 gctcacactg cagcagtctg ctatctgcag ggtgtctgaa ttatagcagc ccatgtccgt
      601 gttacctttt acacaaatta cttacaccgg tttctttttc catgcaaatt catcagtttt
      661 acagcctctt gtagctgctg tcaggaaact cttgcagaaa gcacaaattg ataaaaggag
      721 ttaattttac taggcttaat ttgtctttct gttaacacac cctctcgcgg cgtgcaggaa
      781 gcgcgcgaaa gttaggggaa gataacaagg gggttgagtg ttctggctat aaatccccca
      841 ctcggttcct ttttaatgat ctttccagat tttctcaagt tttaacggtg ctgtctattt
      901 tccatcccg
//
LOCUS       KCLA01002302             907 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37449upu ultra-conserved element locus uce-2560,
            sequence.
ACCESSION   KCLA01002302
VERSION     KCLA01002302.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 907)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..907
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>907
                     /note="ultra-conserved element locus uce-2560"
BASE COUNT          240 a          150 c          200 g          317 t
ORIGIN      
        1 ggggggggag gagagggcaa ggggcagtag ccaatagcta acagctttct agtctgtatc
       61 ttccttcatg aagtttatct tctgtgcagg gatgcctgtt tgtggtggct ggtaagtcac
      121 atactttatg atacttcagc aaagcattca agctctttga tagcttggtt tagatcagct
      181 gtttacatgt ctcggtcaac tgaggtagag gcatctgaat ctggtcatag tattcttgct
      241 ttattaaagt tacttttaaa tatggttaac tgttatcata gcaggcggtg tatttgtgag
      301 ggtaaaactg gtcgggtttt tttacactgt atctctcctg cagccagact gttgatcttc
      361 tcatgcaaga gtcaggatgt cgtttagaac atccttctgc taccaaattc cgcaatcatg
      421 tcatggaagg agaatgggat aaggtaacgt agggcttata ggactgtatt aaccactgtt
      481 taaatttata gtatctgtga gagaaataaa aattcacact ccttatacac tttttgtttg
      541 ttttcttgtt tttctttatg ctgatttctg caggctgaga acgacctgaa tgaacttaag
      601 gccttagtgc attctccgca tgcaattgtg gtaagaggcg cacttgaact ctttcagagc
      661 tgtgtagttg gactaattgt agtggtgtaa tctttagcta tggagctggt tgtccatagt
      721 tgttctttgt ttactttaag cagcttgcat gctatctcaa acgtcatact aatctgaact
      781 tttttattct ttagaatatg agataggaag tccaaaacca ttgaggttaa tatttggtgt
      841 agtgaatgtt taaacattgt taaacatact ttactgataa aataaaatgt ctgtaacact
      901 cctaaaa
//
LOCUS       KCLA01002303             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37464upu ultra-conserved element locus uce-2737,
            sequence.
ACCESSION   KCLA01002303
VERSION     KCLA01002303.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37464upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-2737"
BASE COUNT          206 a          130 c          116 g          179 t
ORIGIN      
        1 tacacagaaa ataagtaaaa cattttaata aggaatggga gactattaaa gcacaacgtt
       61 taaatcaatc aagagagctt ctagaacacc tttgctcagc acctggaaat aagggagggt
      121 acaaacaatg ttctaaacaa gctaattgct tttcagagtc agtctgcctg aagcctgagc
      181 tgttttacat ttcagttcat ttcgtcagag agtaccaaaa ggctgaagtg atttgtggtg
      241 gtctcaggag tctctgccag ctatgatgta tataaaagga attttttatt ctggttgtaa
      301 ccataggcag taatgtttat agtaggtgaa catattagcc tggacgcagg gcatgaattt
      361 tactctagaa aaagccagtt catttataca gcctaagagt taaatgtcgg tatttgaaga
      421 caaattatag ggaaattcat ttaaactcat gttatgtggc agaatataaa aacagacagt
      481 cctatcttta tcaatttttt acagccctct taattcactt tgcttccagc aacccccttc
      541 ccacaaaaca gattttaccc tcttctccct ccagctagcc caaagaacga ataccctaaa
      601 cggccttggg gcacccaact gacagccaca c
//
LOCUS       KCLA01002304             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37480upu ultra-conserved element locus uce-4136,
            sequence.
ACCESSION   KCLA01002304
VERSION     KCLA01002304.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37480upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-4136"
BASE COUNT          196 a          119 c          133 g          193 t
ORIGIN      
        1 acaacaatgg cagagctgtc acttgcacat tatgactctt tctggtgcca agaagagaga
       61 tgtatgctga gtggtgaata acaagcatga aaataaaagt cccaaatgtt catctaataa
      121 tgatgtattt gtaacaggat tacactgccc aatgatattc tttctttatc ttctccctaa
      181 atggtgaggc agctgtgtgc tttggcacag cacaatgtcc ttccttttgt gtgctgcata
      241 ttaatccttt attgaagtaa ttaaatatgt gcttaatggc agcaagttgg cagaatgagc
      301 atacaattga attagcagtt atgatggaga ccatgctaca agatgaacta aatgcaatta
      361 ctgtaggtat ttttctccaa gtcaaatctg gctacatgac atgacttaat tacaggttgt
      421 tagacatact ctgatctcag agtggtgcat gtggaagcac agctttggct ctggcatgta
      481 ctgctaacat ataaatgggc ttaataagag atttagcctc caaaaaggtt gatcccgatc
      541 cataacattg ctctcagttg tagtggaagg cagattaaaa acctggcaac aaaagaaacc
      601 cagtgctctt ctcttgggaa tctggtcttg aacaagcttc t
//
LOCUS       KCLA01002305             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37495upu ultra-conserved element locus uce-6929,
            sequence.
ACCESSION   KCLA01002305
VERSION     KCLA01002305.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37495upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-6929"
BASE COUNT          247 a          136 c          147 g          321 t
ORIGIN      
        1 attattgaat acagcatgtg aaaagcctga ttgaattggt ttttttaagc ttttatcttt
       61 cgagattaat atcctgctgg taatcaaaca ctgtaaataa gacttgtgat tcttagagat
      121 cgttatggta attatccagt aagtcagagt agtatgctga acggtttaag ccatttaaga
      181 tcacgctgtt tcctttttgc atgttgcaaa ttagacagtt catggttatt ttttagatac
      241 attgatcata aagggtatct aagagatttt ccagtactta gctgtaccac ttgcttcttt
      301 ctattttctt cttgtctatg atgtataatt aatcatagat tacttcattt tgtttcattt
      361 catttacaac atttatgagc ttcactttgt cggtatgaaa tgcttgtccc cttctttcct
      421 ttccaaagtg gcgtaattag tgttagcatc ttttttaaca ggctacataa agtttagtgg
      481 ctggattaaa tcaagtcatt aacataatgt gctatacaat ttgcccctat ctcttttcgt
      541 ttccagtaca tcaaagtgcc acagagtgcc agtgtaattg ggccttgcta gcttgtcagg
      601 ttcagtcagg ctgatggctg ctgcttttac taaaaagctt ccaggcatga taattaatag
      661 aggaaagaag tctgagaaat gtaaaagttt ggacagttct ctatgaatat ttcatataat
      721 tgaataatca gaagttaaca ttatcaattt gatgtataat acattgatta aaagccttgt
      781 ttcagatcct caaaatagac atcaaaactg ggaatttgca ttttctttgg catggtcttc
      841 atatttttaa a
//
LOCUS       KCLA01002306             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37511upu ultra-conserved element locus uce-6219,
            sequence.
ACCESSION   KCLA01002306
VERSION     KCLA01002306.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37511upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-6219"
BASE COUNT          274 a          198 c          175 g          161 t
ORIGIN      
        1 accctctcca agtgccagca agccttggcg cagcaaatcc atgaatgtca aacatagtgc
       61 aacctctacc atgctgtccg tgaagcagcc tagtcctgca acctccccta ctccatcttc
      121 agacagactc aagccaccac cttctgaagg tgtaaagccc ccctcatctg gacaaaaatc
      181 tatgctggaa aaattcaagc tggttaatgc taggactgct ctaagacctc ctttgtcact
      241 gagctcagga cccaatgaca gtgggagaga ggatgatacc ttttcagagt gtggtgaaat
      301 tgatgtctta agtggtggca tgaacagcgg tggctccaca agtagcagtc ctaaagtatc
      361 accgaagtta acccctccaa aagctggaag caaaaatctc agcaataaaa agtctttgct
      421 acagccaaag gacaaagagg aaaagaacag ggacaaaaac aaagtttgca ctgagaaacc
      481 aatcaaggaa gagaaggacc aggtcactga aacatctaca aaaaagagct caaaaattgc
      541 aagcttaatc ccaaagggaa gcaagacagc agcagccaag aaggaaagtt taataccttc
      601 ttctagtggg atccctaagc ctggatcaaa ggtgccaact gcaaaacaga gcacttcatc
      661 cacatgcatg ggaagtaagg aggttgaaaa actgaggact acgaaaggaa accagcccca
      721 gtcaacacca aaatctcagc ttagtgagaa gatttctcct tcctctggtc ttgcgtcttc
      781 tgaagggaaa gaatcaagtg cagctctc
//
LOCUS       KCLA01002307             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37527upu ultra-conserved element locus uce-1693,
            sequence.
ACCESSION   KCLA01002307
VERSION     KCLA01002307.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37527upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1693"
BASE COUNT          248 a          137 c          143 g          240 t
ORIGIN      
        1 atatatgtta ggaaaagggc ttcaacagta agaaagactt ggacaaatta aattgacaaa
       61 gctggttatt accttgccaa gaagtctctg tcaaaagata aattctaaag ctagaatgca
      121 tgaaaaagtc cccagataga attaaaattt aaactgattc caaatagata agcttttttt
      181 aaatccacct ctttgctgca agtcaggatt ttaaaaataa attttccctt taaatctctt
      241 gagtgatttt cattttttgc aaggccgcac tgctggtgtc ctggaaaaat ggagagttag
      301 agctttatca gttggtgccc tgaggtatgt ggcaaagaag ctaaatcctt gaagattagc
      361 aaaaaaaatg cagcacatgg caataagggg cttatatgac tactagtatt agttcaggtg
      421 aaagaagtat tgcttataca taaaactgga caaatccact gacaatgtat ttttagttag
      481 ctacaaagga ttcttatatt gctggacttt acctctttgg tgatttggga agcttagtaa
      541 tccactgtaa atgctcttct gctggcccca attcccagta ttactccaga atgctgctct
      601 ttcgttttaa cccctaaaat tacatgtttc cttaatttag ctcaaagatc acacaattac
      661 atatttaggc agtggttgag ctggaagagc aaacgatcaa gttactgctc agacgcttta
      721 accttccatg gtgcattggc ttcagatgta caaccttgta aagttcat
//
LOCUS       KCLA01002308             264 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37542upu ultra-conserved element locus uce-7317,
            sequence.
ACCESSION   KCLA01002308
VERSION     KCLA01002308.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 264)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..264
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37542upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>264
                     /note="ultra-conserved element locus uce-7317"
BASE COUNT           75 a           40 c           49 g          100 t
ORIGIN      
        1 aagctgcacc attcacaggt aatcttgtgt acactttaaa accatggttt gacaattttt
       61 tatgcagtcc tcagccgaat ccctgggtat gaattctgtt ttcattgtca gagtattcta
      121 gtagtatttt atagaacttc aatgtctttg tggacattgt tgtgaaattg gtgacttaat
      181 gtctagctat tatatgtctt tttgcaagac agttaggaac agtatgtaca gtatataatt
      241 gctaaatgat ttaagtatga cact
//
LOCUS       KCLA01002309             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37558upu ultra-conserved element locus uce-6636,
            sequence.
ACCESSION   KCLA01002309
VERSION     KCLA01002309.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37558upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-6636"
BASE COUNT          264 a          166 c          124 g          317 t
ORIGIN      
        1 aattgcagtt atgttgttaa tagactttat taataccaag gaaaaataat atacagagta
       61 tcctcaatgg atgcataact accctctcaa atggagtttc ctgatatttt aaatgaatgg
      121 cggggtttat tttggcagca gcatcacata actaatgttt catattacac acaaaaatta
      181 ttttggtgcc attctttaaa ttaaatgttt tatttcaata aaagcttgta attgtaacac
      241 ttaaattcta tcattaatag aaaaaagaaa gttctgcaag caacattaaa gagtgaactt
      301 cccggatctt tcctctatta cagccaatgt ctttttattg tctgttttca tctccatttt
      361 actttatctg ccaaactact ttgcatttca agacatttcc actcaccttg agttcttggt
      421 tcaaaaagaa acaataaggt ttaatctttt cacttgacaa tgatgtatgg gtctgctgaa
      481 aaacactttt caggtattat cattaaaaag tctctttttt tagtttctct tcaactcttg
      541 atacacagaa aaatacaaca tgtcacacat gtgagggctt ttatcaaagc ttctaataat
      601 accacttaat tagaaaccaa agccttataa tgttccttct gagagctcct tagagtagtc
      661 tttccccagc tttagtcatt cctctccaac taacattgtc taatgactct attagtgatt
      721 tcaaaggcta gcaaagggta ccacttcact cttttctttg cagattacat cttgttggtg
      781 agggaatttg ctgagctcta ccatcacgca actggtttga attaggattt tttttcccct
      841 ctcttgcagt tagctactta ttagcatttg t
//
LOCUS       KCLA01002310             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37574upu ultra-conserved element locus uce-4089,
            sequence.
ACCESSION   KCLA01002310
VERSION     KCLA01002310.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37574upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-4089"
BASE COUNT          221 a          172 c          167 g          280 t
ORIGIN      
        1 tgtatggaca ttttagattt actgcatgta tacagatcat ctgggcagca ttttcagcta
       61 tttccaatgc accccatgtg ctgcatttac tgcatgttgc acattgggaa tcctagaaag
      121 aaaacaggga tgctctggct ttcaggattg ccttatgact tcttcctcac gaagggtgtg
      181 ctgtctaaag gtacagttaa taattgcttg cagtttggac tttactggtc cagaggtgtt
      241 tgtgggggag aatgtaactg tctgtttatt actaggatca gtcaagatct ggctctcatc
      301 gcacgggaga tcaacgacgt agcaggagag atagattcag tgacttcttc aggcactgcc
      361 cccagtacca cagtaagcac tgctgccacc acccctggct ctgccataga cactagagaa
      421 gaggtaggag atcttcatgg agaaatgcat aaggttcttc cttttcttta tttattttgc
      481 ttttagcatt ttgcatagcc tttcttcagt tattccagtc aacctgtatg catgacttct
      541 gcatcatttt ttcatttaaa gttcctttac atttcaacaa acccagagat gattctgtga
      601 acgtggtttg tccaaagggt acatattctc tgtctgtctc tttttttcca caaaacatag
      661 gacaagatag ttctttattt cttgctcatc tgtagcctta ggtactgtgg atggtgtcta
      721 aatgcattta aaaatactag tgtgaatgca caaatttata tcaatgtaga catttaatac
      781 ttcgcatagc tattaaagcc aaaacgaccc tcttttcaca ggtgataaaa gtttcatctt
//
LOCUS       KCLA01002311             894 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37590upu ultra-conserved element locus uce-3353,
            sequence.
ACCESSION   KCLA01002311
VERSION     KCLA01002311.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 894)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..894
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37590upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>894
                     /note="ultra-conserved element locus uce-3353"
BASE COUNT          288 a          195 c          151 g          260 t
ORIGIN      
        1 tccgcttttt actgaaatta aactcagcct cgtgaagttt tcacgttgtt ttaatcgaga
       61 cccaggcaaa gcagccagca actgcattta ttattaaaac aaacttcttt aaaaattcaa
      121 atctcggctt attaaaaaat ataataaaga cttttatgta gtttagtatg caagagttag
      181 attgcttgac ctctctttta atgacttaat tagctgtact aaagcccagc tgggcctctg
      241 ctgacaacat agctagatat ttcaatcagg cagtgttatg gagaataagt aataaatgct
      301 accttgtcgc catacagtcc caacccagag tgcatgctgg taatgctaaa tttgatcagt
      361 atgcctcata tttcaattag tcgtggtctg aatcactaaa actgtgtaat gtggatgaat
      421 tcctgatatc agatacagag ctacaggctc ccacagttag aagccattga gtttgctttt
      481 attagcagcc aattaatggc caaaatctgc attgctttta aaatttataa cctctattcc
      541 agctgcatcc atggctcctg gtatactgta tacaatcaga tccatatcac tgtcgcaagc
      601 caaacagctg caaactgtat tctgtctgca gagctgaaaa atccttccat acagaagctt
      661 ttttttaacc tcttagaagt tcttttcaaa gcccagcagc accagtcact ttgcgacaat
      721 gagcgattta atacagaaag aaagaaacct acaccaaggt atcctcttgg gatgtgctag
      781 gttttcaaac gaatgaaacc ctatcacttt ggcacagcac aagggcaagc aaagccactt
      841 ctcctgacca aggctaagaa aatataaaca tataaaaccc gaccctcatt gaaa
//
LOCUS       KCLA01002312             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37605upu ultra-conserved element locus uce-6351,
            sequence.
ACCESSION   KCLA01002312
VERSION     KCLA01002312.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37605upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-6351"
BASE COUNT          247 a          174 c          218 g          246 t
ORIGIN      
        1 ctccacgttg cgctgcttgc tctccgcaaa gtgaagacag ggcagcagtg agacgggtcc
       61 gcccctgtga gcaagctgtg ttttactgat ggtcactgtc acctcaggaa ttcactagta
      121 aaggaaacaa aaaggaaata taataaaggg ataaaggcca tttccgattt tgcctttcag
      181 cttctaatcg tacggcaata actttgcgat agagttgccg atggcaaacg tgcaaaagac
      241 attaacttta tttatgtttt ggattattaa tgcggctgtt aaaattcctc cagttagttt
      301 tgattgaatt gtttttttgt gcgattctgt cgtttaatgg agcggtaaat aagaatttct
      361 gataatgagc ccaagcatct gtcacaacaa cctggcgctg gttattaaca tttccattaa
      421 cggcagggtg ggcagtgata atatggaaac cacacagtta gaacaaaata aatagttggt
      481 gtcaggctga gtgggtgtta attactattt tattttataa ctctgagggg agggagtatt
      541 ggtacaaaac tgtgacttat gaaggtcatt ctctctaaag aaagaagtct ccagaggagc
      601 ggataaccgg ggctatctaa ctcgagtagc gaatgtttta tcacttctat ttatggccca
      661 taaaggggca gagagaaaag aggcagctct ctctggtgct ctgggtgaag gctacagcac
      721 tgtgaagatg gagaaaggag aaatataccc tttgccctgc ctttctcttc cttcttctgg
      781 agtttgtaca ggacgcgctt cagcacctcc tctgcacaca gaacacgtgc tggtttgtta
      841 agacctgccg gaggcagaga cagcaggtcg ggaaaacagc ccgtc
//
LOCUS       KCLA01002313             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37621upu ultra-conserved element locus uce-7721,
            sequence.
ACCESSION   KCLA01002313
VERSION     KCLA01002313.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37621upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-7721"
BASE COUNT          195 a          177 c          158 g          159 t
ORIGIN      
        1 ccagaacgag aaaaggaagg acagtcattt ctgacatctc cagtttcaga ccagtgctat
       61 cccattatca gcaaacacag gtactggcca caactggttt cctcagccgc tccttcccca
      121 aagaaacaaa aaaaaatagt aataacccct tcagctctca ccttggatct gagatcgacc
      181 agatctgttg tccagttttt tgcgatcaaa aataatccag agcgttgctg gctgtttaac
      241 cgagagaagc cctaattgat tcccacagta attaacctgc attttacctc ggagagtggt
      301 agttaaggaa gtcggcgctg ctatttataa ctcatctcaa attgagggca gactgcctaa
      361 aatctaacac atcccagctg tactcctgtt tgaactgggg ccaagggaat tttttaaagc
      421 aatcttggca ctgaatgaat gacaccaaca gtatgagtgc gcgtgtggtt gtgttgtggt
      481 gacgtagcac tggaggtgga aggggaaggg ggggtaaccc ggcgtaatcc ctcttcccaa
      541 cccgctcgtc tcgtacggcc tcggcagcgg ccgctatgac acgccggagc ctcccaccga
      601 aaaccaaaca caggaaacgt cttttcctgt ggaacgcctt gaagtgagaa gcacatggct
      661 aatctgcata aaagcaaagc cacaccact
//
LOCUS       KCLA01002314             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37637upu ultra-conserved element locus uce-1363,
            sequence.
ACCESSION   KCLA01002314
VERSION     KCLA01002314.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37637upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-1363"
BASE COUNT          227 a          109 c          142 g          191 t
ORIGIN      
        1 aatggggcgg ggcggggggg gaatctgaga aaataacaaa gcagcagtgt atgcgtgcaa
       61 tgatttttca ttctgtttcg cttcagctct gcccctgcaa cagaggatct aatcaatctg
      121 ccggctatta agtttgttaa ttgataatgc atactaatta ggctgtgcgc agttacttaa
      181 gagactttgc taaggtgatt gtaggcacaa gtccaaatgg agtttaaagt attctgtgtg
      241 aggttaaaac ccatcaacca gaatagatgg attttatatt ataacagaag gcacaacata
      301 ctcataagta tttaatgcat tgcacggtta tccattgtta catgtcctaa gtctaccaaa
      361 taattaaaaa tatgaacaca gcctctaaaa tatgtaacta aataaagtgt gtgtgtgaat
      421 atgtggagat agtagagatg gagggaaaat gcaatttggt cttaaaataa atactaattt
      481 tcacacttaa gtctaggaac aatagtatgt agctctgctg caggggagga gcaagcataa
      541 tgagaatgca gcctaatcta gttttatgca taatttgata ataagccaca ttaaaattac
      601 atgcctttcc ccccatccaa tagggcaata aaccagtagt agcagagtag tatcaaagtc
      661 atgtcaagt
//
LOCUS       KCLA01002315             685 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37651upu ultra-conserved element locus uce-4396,
            sequence.
ACCESSION   KCLA01002315
VERSION     KCLA01002315.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 685)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..685
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37651upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>685
                     /note="ultra-conserved element locus uce-4396"
BASE COUNT          253 a          123 c          123 g          186 t
ORIGIN      
        1 ctgtgataat gtgctgttca aacacaagaa agcacagcct ggattaaaac cttggctcgg
       61 aaataattgt gaaatttgag gtgttttttt ttaaattaaa aggatttaat taaaaacacg
      121 agatgaaata aatattttag gcaaccagca acaaaatggg aaaataccat gtgtttggag
      181 ttttagtgcc ctctgagtac tggaatttat ttgcagcaag cagaaaatag acagcaagca
      241 taaaaattca gcagattccc gctagtaaaa ttatttatca agctaacaag ggaggaaccc
      301 ttctagtagc aacaaggcag caaggagaag acgtgccttt atattttacc tttgggttag
      361 cacaccagta aaaatgccaa ctgacaagca cttcacataa acatttcttt ctaaatgagc
      421 tgccttgtta gagaagaatc caagcgaagg agcgctacag tcaaccgaca gaaaaacccg
      481 ggatgaatcc tccatcactc cacgttaggg gaaaaaaata ataaagacat aaacctaacg
      541 ttggagcata aatgaattta ataaattaac acttcatttt gcatttcaaa taactactcg
      601 ggttataaat cattctacca agagtgtatg ctggttatct attatttagt tctttcttac
      661 tactggaact aaacagatac acaca
//
LOCUS       KCLA01002316             574 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37667upu ultra-conserved element locus uce-7200,
            sequence.
ACCESSION   KCLA01002316
VERSION     KCLA01002316.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 574)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..574
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37667upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>574
                     /note="ultra-conserved element locus uce-7200"
BASE COUNT          164 a          133 c          135 g          142 t
ORIGIN      
        1 gggagccggt gccagtgccg gcggtgcggg ggggaggcgg gactgggtgc gccgctgccc
       61 ggcggtaccc gcggttgtgc cttgggagga ataacatctt cccctgcttt tgcagcgcgc
      121 ttaaatacta aacagaggag gagaagacgt ataaagaagt acttaaaata actgcttcta
      181 atagccttta atactgacat tttgggtaag taattacagc aaatttcaca tttcaccttc
      241 aacccccgag gctacactgt ttctccacct cctctgaaat gaactaaaag cacttactct
      301 ttccaacagt ttaatattcc gtgggttggc tatttttctc cacttgctat taaagaattt
      361 actcgatata gagcgtgttt ctaatgcact gggaaacaga ggtgcagaaa cccctcactt
      421 caggaaaaaa aaatcaatgc cagtcactct atgggtgggt gtgggggtgg ctgtacacac
      481 gcagacagga acacatacct tatcacagca atgaacaaag catgaaaaag cccacaatca
      541 catgacatgg tctatgtaca actatgattt aggc
//
LOCUS       KCLA01002317            1076 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37683upu ultra-conserved element locus uce-7869,
            sequence.
ACCESSION   KCLA01002317
VERSION     KCLA01002317.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1076)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1076)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1076
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37683upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1076
                     /note="ultra-conserved element locus uce-7869"
BASE COUNT          315 a          192 c          207 g          362 t
ORIGIN      
        1 accaataaac atttatgata tgaaaagttg ttggggggcg aaaaaaccca cacattttcc
       61 tgatgagtat cttgcttttg gaataaatag acctgttttc tatggctgtg gtgtttgtat
      121 tgcttgacat tcataatcat ttctttatcc ttagcgggga taattacagt agaagtttag
      181 gctgattttt tctttgcatc tgttgaaggc ttatttacct cttaagagca cagaaagtac
      241 taaactgaac gggagaatgt ttacagctag gtttcttatg acccaggtca tattgttgtc
      301 ttgaatcagt tttctctctc gtcctcaact gaagacaaaa aaactgactt aatcttgtgg
      361 ggttaaataa aagaaggaat tcggtgcaaa gaagattcct tttatgcaag ggagcagaga
      421 tgactgaaag tgcctgcggg catttggtcc ccattggttc tcacatggaa tgcaatgatg
      481 cccacagata gcctgtattg ttatcagtta aatgggatca tgagtgtctg aaaggtgttt
      541 gagaatgaac tgaaaatcat tttcacaagt ggatgattac ttctgccaca tgttaaccga
      601 actctatcag agtggcccag atttctgaga ctgcattaat tgctctttca accttgactg
      661 aggtttctct ttaagaaagg cctttgctag actaaactgc tacacatatt gatttttctt
      721 tctatatttt tttcattgtc tgtgataaat gaagcctttt gcaagtagag aatttatcat
      781 tcaagatgta gatagattgc ttcatccctt ggaataaaaa gaccagtcta aaaatgatct
      841 ctgcagaagg agtaaatcct ttctcgtttc tccagcagtg aatagtgcca gtattccacg
      901 ctcaattgta ttttccagct attcattagc gctgattttt tccccacaaa gtcgagttct
      961 gcactctcac agcgtggact tagagcaaat aagctgccat cttctataat atttcaaaaa
     1021 actggttcat tttgtaacat aaagaaatgc attttgaaaa tattcaacgt ttatat
//
LOCUS       KCLA01002318            1023 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37712upu ultra-conserved element locus uce-5586,
            sequence.
ACCESSION   KCLA01002318
VERSION     KCLA01002318.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1023)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1023)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1023
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1023
                     /note="ultra-conserved element locus uce-5586"
BASE COUNT          233 a          248 c          256 g          286 t
ORIGIN      
        1 tttcctctct gcagggagca cacagccttc tgactccagc tctagaccct gctgaacccc
       61 agtggagcta gtttctggaa gtcctttaga ggttgccctg tttgtgctga tgggttttca
      121 gtgctcgctg tggcttgtca ccagacatcg atttccattt cccattctct gaactctctc
      181 atggctcaca cgcagtgagc tcaggctgtc tgctgtgaga agtcagggtt gtctactgca
      241 ggcagtagtt ttagcttcca agacctccca ctatcaaaat atttggcaag gctgtgttgt
      301 aaacagattt gtggttctac ctatcccttc tccttgtccg gtttgctcac accttctgtt
      361 ctcacagttc ctttcccctt cagcccagta gtgtctgtct cttccccttt cagtgcctct
      421 aatggaggtt ggtaatcccg ttaggtgctt gcagctggca ctgccgaatg ggtttgcagc
      481 cgcctgtgcc aggtcaagtg tcattgccag cagcgctctt ggtgggatga aggttgcatt
      541 agcgaacagt aattgaaatg caaaataaca ttttgatcga gcaagcaggc tgtttattta
      601 tcagatcaat agccaaaatg ccccatctgg agaagtcagc gtgataataa atgatagcat
      661 cccaaggtca aagggaacaa actcagcggg ggggacatgc tggcagggga agccaacttg
      721 agttgggtca cactgggctg tcagttgctg agacttgctt ctttctgggt cctttctttg
      781 aagaaggaag gctctttcct agtacagtct gtagagtgtc cagacatctg gacacagagc
      841 aaacaattct taaatacgag atcaggcaga gcacagacat gtcctgctct gacagactca
      901 gggttgtgac tgaagatgcc gactgcagat gatgtagctg tgccaggcag tggagtttgc
      961 tctagcacaa tctgtttgct gtaaaggtct gaacactgac aacccagata tgtggcatca
     1021 cag
//
LOCUS       KCLA01002319            1141 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37727upu ultra-conserved element locus uce-1576,
            sequence.
ACCESSION   KCLA01002319
VERSION     KCLA01002319.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1141)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37727upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1141
                     /note="ultra-conserved element locus uce-1576"
BASE COUNT          367 a          216 c          217 g          341 t
ORIGIN      
        1 tgaaagttct cagatattgt cagatctaca gtgtgtagat ttgaagcatt tgttccaggc
       61 acacagcaat ttttgccatt tagtgatcac tttaaaattc tgcaaagcct tttctcatgt
      121 gttcttgtgc agcgctttgg gagattgtct gatgtgaaag gcactattac acatcgaact
      181 gattattgtt gtttgttgct gttaacacag acaagaaacc ctcctggcag agaaacaact
      241 tctttgctaa taagtattca taatttgtat ctcagcaaaa gatgtaaaca tatattatca
      301 ttaaataggc tgtaatttta attgcctata aatgttatta attctgattg tgattattca
      361 ataggtaata aagataaagg ctgtcaaaat taattaagta catattcatt aaattcaagg
      421 tagcttcagt ttctttattg cacaaataca attaacactt aatctgaatc tcagtaagtt
      481 acataatcat gtgactcaaa ataaagggag gatacaacct tggcctttta ctttttacat
      541 gggaaaacat taatgatgct gacattggag acaattagac agtgtcggcc aattgttttt
      601 agtcagcttt ctctcacatc tgtggtgtct acaagcaaga agggccattg tttctgcagg
      661 cctccatcgc gctttggctc tttgtgcgaa ccgtcaatct cttgctgaat atcaaagctg
      721 tgaggaaatt agaacagacc agctctactg caccacacta aagcttagca gggtgcatcc
      781 actatgctac taattaggca gtggccaaca aaataacctg tcaatgtgtg cttgccattt
      841 cccacacacc tgcatttcat acactaataa gcgtagagcc agggagagaa agggagaact
      901 gctcgagtgt gaaaaatgaa caaaatataa cagtgtttct ctccccacct atactactgc
      961 caattaccat ttaacattag gtagaatcaa catgtcggaa gaaatacaat acagtatctg
     1021 aaactaaaga gggggtagga aggggcaaag ccacacatag cgagtgtatt aatgtttgct
     1081 atggaacgcc gcaccgagca gaatctcccc ttatttgtat aaaccaggag attgaaaatg
     1141 a
//
LOCUS       KCLA01002320             817 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37741upu ultra-conserved element locus uce-3978,
            sequence.
ACCESSION   KCLA01002320
VERSION     KCLA01002320.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 817)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..817
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37741upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>817
                     /note="ultra-conserved element locus uce-3978"
BASE COUNT          170 a          205 c          255 g          187 t
ORIGIN      
        1 ttcctctcct tgtggttaca gaaccggagg gaaggccctg gctgggttga agcctctgca
       61 gctgcgtgcg acacgcaggt gcaggccggg agagggccct ggggttcagc ctgtcgtgtg
      121 ctgtgcgcgc gagctgcgcc cctgagctgc tttctcttgg cttgcagcgt acatcagggg
      181 cggctggatc ctgcggaagg cctggaagat ttacaacaag tgctatacgg acattaacgc
      241 ccttcaggag atcttccaga agaaggccac tcaggacttc tcgacttgtg atgctgcaaa
      301 tgataatcat gttgctgcag agggtgtaac ggaggatgcg ctaaacagac tgaaaggtgc
      361 tgttagcttt ggatacggac ttttccatct ttgcatatcc atggtgcccc caaacctgct
      421 caaaatcatc aacctgctgg gttttcctgg agaccgcctg caggggctct ctgcactgat
      481 gtatgccagt gaaagtaagg acatgaaggc ccctttagct acgtgagtag ctatattgca
      541 atgctttggt agataacgta gtgctaaaag taagtaactg gagaaggatc gaaaccagtc
      601 gtgctgcccc gaaggcagtg gcagaggtgc aataacctgg gagctgctgg cctagcctgc
      661 cgggggctag cgaattcctc gctccctgcc acggggtctc tgcgctggca ggcggttacg
      721 tgcggtgggg tggtggcggt gtgctctgcg gtacctccta acgttcagtg atgtccacgt
      781 cagcagagtc ggtgagagca gccctaaggc tgagcac
//
LOCUS       KCLA01002321            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37757upu ultra-conserved element locus uce-2940,
            sequence.
ACCESSION   KCLA01002321
VERSION     KCLA01002321.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-2940"
BASE COUNT          305 a          196 c          244 g          290 t
ORIGIN      
        1 agaagtaatt tctgctgtgc tgtctgtgct gggtattgca tatgagaaat gtttacgttc
       61 tgtttgagaa ggaagacatc tttagagctt ttagggaacg ttacagtgag agggaagaga
      121 acttttagca ttactgatct gcatttttta cattatgata aatactcaga agggtttcca
      181 ggaacatttt aagcgtgcgg gcatggtggt gatagctatc tgcgtgactg ttaaatttat
      241 acaaagtctg tctgtgatag atatgtgtgc tagttttaaa tcctttccct tctcttttta
      301 agagagtcag ttttggaaca gctgtaaatt agtgatgggc tattagtgag ctgtgtcatt
      361 atttaataaa aatggcttct ctcaccttat tttttatcca ggtccctgac aggctggatg
      421 aaatgagatc cccatgtagc aattgccatg gaaacctgtg actcccctac tatctcaagg
      481 caggaaaatg ggcatagcac atcaaagcta tgtggaacta cacaacttga taatgaggtg
      541 ccagagaaag ttgcagggat ggagcctgac agggaaaaca gctctacaga tgacaacctg
      601 agaacagatg agcgcaaaag tgaaatcttg ctgggtttca gtgtagagaa tgcagctgcc
      661 actcaggtta cctcagcaaa ggagataccc tgcaacgaat gtgccacttc ttttcccagt
      721 ttacagaaat acatggaaca ccactgtcct aacgcccgcc ttcctgtctt gaaggatgac
      781 aatgagagcg aaataagtga gttagaggac agtgatgtgg agaatttaac aggggaaata
      841 gtttaccagc ctgatgggtc agcatatata attgaggact ccaaagaaag tgggcagaat
      901 gcacagactg gagcaaatag taaactcttt tctacagcga tgtttctgga ctctctcaca
      961 tcagctggag agaagaacga gcagtctgct tctgcaccta tgtcgttcta cccacagatc
     1021 atcaacactt ttcat
//
LOCUS       KCLA01002322             521 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37773upu ultra-conserved element locus uce-2815,
            sequence.
ACCESSION   KCLA01002322
VERSION     KCLA01002322.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 521)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..521
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>521
                     /note="ultra-conserved element locus uce-2815"
BASE COUNT          192 a           94 c           84 g          151 t
ORIGIN      
        1 catccctata aacaaatcag cttaagccta atgaaatctt atttttgtaa attaatgcac
       61 aaaggaaaca gtcaagtgta aacagacttg tagtctgcat tgtttagagc ctatcgactc
      121 tggaattagg ctgcttttca aacactgcac gtcaaaaata tagtcaaaat gcaaatgtag
      181 cataaacggc tctataataa atgctcattc aacatttatt ctttctcaaa tcatctttta
      241 aagctctttc atgctaatgt ctcaaagatg tgacattaga aaaattgctt tgacatgcta
      301 aggggctcca agattaacaa aaagagaaag aacaagataa agctttcaaa agacctattt
      361 cagaggaatt attacttcct ttgaaagtct tccaaggttg cagtgcattt aagcttgttg
      421 gcatacatgt aaatgaagga ctacaaaagt attccactaa atacaacttg aattaaacct
      481 ccaggctaat gctaaggaat gaggataaag gccagacctt a
//
LOCUS       KCLA01002323             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37789upu ultra-conserved element locus uce-6943,
            sequence.
ACCESSION   KCLA01002323
VERSION     KCLA01002323.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37789upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-6943"
BASE COUNT          192 a          123 c          111 g          158 t
ORIGIN      
        1 tatgatgtta aaatgaaaac ttgttgttgc atcccagggg gactcaggaa cactgacttt
       61 gttgcccatc agaaatggga taatgttctc tattcctgtc atgtgggtat cagttccaac
      121 ttggaaacca gcctcctctc ataattcaag ctggggctat atagtgcaaa ccttctcaga
      181 tattataagc cagtatgagc tcaaaaaaag aattcactgc tcaaggccaa atagcttcaa
      241 agctaacaat cctccagagt cagtgtgaaa gtgttgaaac tgtcaatgtc aacttacacc
      301 atgcatagtg agtgtaaaac ttcaataatg acatcatgga gaaaaggaca aagggcaggc
      361 actacacaga aaagtgccag tgctcttcaa atctttgaaa ccttcaagga tttatctgga
      421 ctaacacttc tacacatagt cattggggtc ttaggctata ctgattaagg atttagctta
      481 ttcaaaggct ctcacagata gcaaggatga caaggtttca gcagttatat tggattccat
      541 tagctttcac ttaaaaaaac cataccccaa aaccctcagg atcc
//
LOCUS       KCLA01002324             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37804upu ultra-conserved element locus uce-7691,
            sequence.
ACCESSION   KCLA01002324
VERSION     KCLA01002324.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37804upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-7691"
BASE COUNT          129 a           98 c           78 g          121 t
ORIGIN      
        1 aaagaaaaca agtgaaaagt ggaaaacatt tggcagttta gtatcttagg ccgcatattt
       61 gcaccctgct cttcgaacaa aagaacgatg agcctgcgcg cgcacacgct catgcttatt
      121 ctatgctttt cgcctcatct ggcagccgct ttccggtcca gcagacacta acatctaatg
      181 agtcaaactt cccattttca gactaatcag tcggctgcac taattgcaaa tgcaaatatg
      241 caaatttata ttaattaatt actctgctaa ttagttctgc ggtctttttg gggtaataaa
      301 tcattgtgca gtggaaggga aacacgtcct gtcccatttc actccacata aaaatttaat
      361 gtactcattg aagaaaatat atggaaaaaa ccccagctcc gatagctctg ctcctgctga
      421 tgagtc
//
LOCUS       KCLA01002325             932 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37820upu ultra-conserved element locus uce-7372,
            sequence.
ACCESSION   KCLA01002325
VERSION     KCLA01002325.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37820upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>932
                     /note="ultra-conserved element locus uce-7372"
BASE COUNT          267 a          230 c          198 g          237 t
ORIGIN      
        1 agaaaaccca aaacccaaac taaaccaaac aaacaccgag gaagttgagg gaaataaacc
       61 cctaaatcga atttcttgct ttaaaagtgc tttacatata tcaccaccaa ccagcatgta
      121 aatttgagtc agcccctgga ctagtctttt aaagaagttg aaaaatggcc ctgtgtcctc
      181 aaaggacaca cctgttatct gaaacagttt ttaaccagct tgttaagcag ctttgacaga
      241 tcaaagaccc cggacaatgg gcacaaactt taacaatagt ttagccttga gcaaaagctt
      301 ctgtcaaagc caggcttgtg ccagtagtat tatggcctgc aattgaaaat aaattttact
      361 tgaataagta cctcagcccg atcagaggcg ctgccgccag ggagacaaaa gcagttgggg
      421 ataagttatt gactccactg acagcatgaa tgaagttcat tatgccaacc cactcttggt
      481 aaatgtgtca ggttttaaac tgaattaggt ggcaggtgca tggaccattt tcctgccccc
      541 cttgagacag cagagagcca gccatcacct gattctacag acaaatgttt agatttggtt
      601 ttcatatcgc atggcacgag caatggacta ttcgaatcat aaataaggct tcgtgtgagc
      661 ccttgtccat acttctctct ccaaccccat ggctggcagg ctgtgctccc gcacactgca
      721 cactggaggt gggtttgcct cagcaccact gcagccacct tccttgtcta acacgggatt
      781 gtgtaggatt tgggcttcca caggccacca ttggggtcca gccctgagcc agagggaagc
      841 ccaaacccct ctgtccctat ctgtgtcaca ctgcgtgtct gtgacacatt tttatgagat
      901 atatacgggc ataatctagt gaagcattct tg
//
LOCUS       KCLA01002326             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37834upu ultra-conserved element locus uce-4303,
            sequence.
ACCESSION   KCLA01002326
VERSION     KCLA01002326.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37834upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-4303"
BASE COUNT          266 a          119 c          212 g          208 t
ORIGIN      
        1 gaggggaggt ggggaaggtt gtctcgcaga aagagaatta atttggttta ttgggcactg
       61 aaaagcagag gcttttgtca accagagaag aaaacataga tttggaggga gagctaggtc
      121 actagttaaa tgtcaaggtc tgctaaaatc aaaaggtagg aggggtgggt gacaatgaaa
      181 tctaagtaga aaaccataaa tgtaaagaaa caccgctatt gcggggctgg ggtggaatga
      241 gaaaaatgac cagagacaaa gataggcagc ctgggtctgg aagtaattac ggccaagtga
      301 agacaactga attccatgtt actttggtgg atgtctgtaa aggcagtttg gggaggtatt
      361 ttggtaaggt ttactttttg gagcttagca acataaattt gttgtcactg aactattaaa
      421 taaaatagac acatgttggc aacgagcgag cagccgaggg atggaactga ttaagggaca
      481 gcctatgaaa taatagctta aatgggccca ctgcaggatt ttaatatccc atgacaacac
      541 tcaattgtca aattctgctg cagtgtccag gatgctacta aaattaaggc agaaattcct
      601 agattgagtg ggtttttaat acagctaaga acaggaaatg ccagtaagct gggagaatct
      661 gagcaagaaa ctgggaagaa aagaggatgc tctaccattt tatgagattt ctgccatgaa
      721 atcgataaca aatgtctttc acctccacac gataaagagg cgatgtggga ttttaattgg
      781 acttttggct tttcttcatt tgatt
//
LOCUS       KCLA01002327            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37848upu ultra-conserved element locus uce-7924,
            sequence.
ACCESSION   KCLA01002327
VERSION     KCLA01002327.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-7924"
BASE COUNT          232 a          209 c          191 g          371 t
ORIGIN      
        1 gaattttgca gactgggtaa cttggaaagt cagggtcttg gactcatctt catctgtttc
       61 ctccagccta gggaaatact gatcttcctc tgatattcta caatgctact gggtagtgta
      121 acttggaaga ggatcaggac tgtcggtggg tggatgaaga gggagccatg gttgtgtgct
      181 gatgctgcaa agtgtatgct gtgcatttac atctctaagg gtaagggtct tgtgtgaggg
      241 aagcaccttg gtgggcattt gaagagtaag tattgcacta ttttaacttt gtttcagtct
      301 tgaataatga acaagagggt tgaagtcaat gacaaatacc agggtgggaa ggctatacag
      361 cacccttctt ctttatagta cagatggcat gattacccac agagtcctgg tcatattgtc
      421 ctctttctca ctttgtgtgt ctcaggtgcc ccatgccttt ttttgaaaaa ctaacactag
      481 atcattcatg caatgtgtca tttttactaa ccaactaatg tactaacacc ctaacgactc
      541 atctttgctt ttagttattt taattaacaa tcgttctgtt cacgattttt taatttcctt
      601 tcttccccct tttccgcaaa gcactcaggc attggacacg ctatggtaaa caaactacat
      661 tgtctggtag atatcattct tattgtctct ttttttgggt ttgccgtgtg ttacctgcct
      721 tttcctaccc ctatcccctc tttttccctc cttcttcctt tattttattt ttttaatcga
      781 attgaaaact tgattatttt cctctttttg cctccccaat tctttttcaa tgaaaaaaca
      841 agcaacaaaa gcaactaaca caactcttca ggaaatgggg tttggacgtt tctttcattc
      901 gttttttcac ctccctattt agttcttttc attccagtac taaattgttg ggggggttgt
      961 cccttgcctt tgagttgaac tttctctctt tggttttggt ttt
//
LOCUS       KCLA01002328             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37863upu ultra-conserved element locus uce-4932,
            sequence.
ACCESSION   KCLA01002328
VERSION     KCLA01002328.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-4932"
BASE COUNT          222 a          130 c          126 g          218 t
ORIGIN      
        1 gattctgtat gatcccacaa agacctctgg gctctgtgtg cccatggtct tcttgtctgt
       61 ctttcagtct tctatcaaat ctgttggctt tgtttctgtt acattgatgg gaaagaaatt
      121 ttaatgctgt actgtgtatt tactttatct gcttgtcttt acaaatcact cgacaatcca
      181 agggtttggt gtgagacaga gagcgagcaa gaagtagtat ttatagtaaa acatggatag
      241 tcaatagcgt atgggaaaac aactgaaact gaaaacggtc ccaaaggtaa tttgcaaatc
      301 tgctgaaatc ccgaacaagc tttgatttaa ccgaagcttg aaatggcttt tatttactgt
      361 ctattgtgga ataaatgaca tctcataaac aggctttatc cattaccaca gaatggcgat
      421 cactgtgtta gggacatttt atcctcttga tataaaacaa gatatgctat agtgtgttat
      481 tacaaataga aaaatcaatg ctgagacaca cacctctgaa atttcatttt tgtggaaccc
      541 cattttcaaa aatgtattct ctaataaaaa cgtctccata accgggggga tttacaaaac
      601 actgagcaac aaagaacaat aacaaacaat gaataaagtg gctccatcct gagtcttttt
      661 gctgtacatt agtcacacac ttgcatacat ttctga
//
LOCUS       KCLA01002329            1091 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37879upu ultra-conserved element locus uce-3337,
            sequence.
ACCESSION   KCLA01002329
VERSION     KCLA01002329.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1091)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1091)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1091
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37879upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1091
                     /note="ultra-conserved element locus uce-3337"
BASE COUNT          307 a          208 c          243 g          333 t
ORIGIN      
        1 accttaagtg ccagacagga ggacagcagc tgagcactgg aaactaaaat cctgaggaaa
       61 aggcttttcc caaggtcctg gtatgtgcat tttgtacagc agtaatattg ctgaacctgc
      121 cttttagtgg agaatctgct cctcaatgct ttatcccttc agacaaatgg aacttttgag
      181 ttcaaaacaa agaaaacaat tctgcatgtt tgctttgcac ttgaaataaa taatagaata
      241 aatgagtgtt ctgcatgcat caaatcccat gatgtgttat tgttctttct tattgttgcc
      301 atgcaagtca tgtttaagtg tctgttgttt ggatctgtaa taaactttga tctgtctatt
      361 aaggaaagct ttaaaaaaaa aaacaacaaa caaacctaaa acctccccaa acccaacaac
      421 aaacaaacga aaagcattga tgtcaaagga aattaatttc ctcgctggct tgtgtttttc
      481 tctgaggcag atattgatga gtgtgcagag gggatcattg agtgtcacaa ccattcacgc
      541 tgtgttaacc tcccagggtg gtaccactgt gagtgcagaa gcggtttcca tgacaatgga
      601 agctattctc tttccggaga gtcctgtatt ggtaagcaat gatcagcata gtgtttggtt
      661 ttttgtcttc ctctttctgc atggtgtaac caagtgacta ttcagccact gtcctgagca
      721 gctcctgtgt aatgtctaat gagaatgcaa ttgagtgtgt ctgtttgtgg gcacccaagc
      781 cgcgcagcgt gggtgccagt tgaagagtgt cccatcctgg aacagttgtt gcaggaggga
      841 gttggttgga gatcaaaagt gggacttact gtgctttgcc attcatcata ctaacttgtt
      901 gtaaagcctg ctgcaggctt cctgaggagc ataatagacc aagaaaaggg aagaactgct
      961 tttccatttt caaatttttg cagagcaata tgagagggca tttggaatag ctttatgatg
     1021 ctttggtttg ttcgtttgcc aaagttttgc atcttttaga attctgcaaa tagcatcaag
     1081 ctcttaatgc a
//
LOCUS       KCLA01002330             900 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37895upu ultra-conserved element locus uce-3393,
            sequence.
ACCESSION   KCLA01002330
VERSION     KCLA01002330.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 900)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..900
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37895upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>900
                     /note="ultra-conserved element locus uce-3393"
BASE COUNT          180 a          234 c          229 g          257 t
ORIGIN      
        1 agtggtttct cctggagcta tgcagctgtg tacgactgct ctgttcaacc ttactgtaca
       61 ttcagcacta ggtgccttcg ctctcttcaa ctctgcattt ccataccagc ctgaaaggag
      121 ctgtagtaga aataacaccc aggcgtttac cctgatccct ctctggtgga gccttccctc
      181 ttaggtcagg ttaggcgagc actccgtggc tcattaaagc tgtgttccgc actcccatgt
      241 ggggtgaata cccacagata aacaccgagc agagcagggc ttgtaacgtt cccgttcctg
      301 ctcaaacacg agcgtgagcc gcgccgggca gcggggagcg ctgaggcttt gtcgctcctt
      361 ttttattgtt gtgggttagc gtttcttcta actggaaaca gcccctccgg gttgcctgcc
      421 tggttagcca tggcatggag acaaacggtt ttacagtatc agacatgcgg tttcctgtct
      481 gtgtttaact ttgaacagaa catcgcagcc agctgctccg tggcttctcc agacaagaga
      541 taatagcctg tcataattct gcctttgagg ggctgtggcc ctgacccgct ccgcctcttt
      601 gccctgggtg tctcttgaca ttgagcaccg attgctgccc tgtctttgca catcctgcaa
      661 ttttagagag ggggcaaatg ctgctctgct gatcaaaacg tggctgtgct tgtttattag
      721 gagaaaccga ggtgataaaa gatgctggaa gtttccagtt gttcacttcc ctttcaagca
      781 gtggctaaat tgtcagtgtt ctagctcttc ctcctcctgg gagtacgctt gagacaattt
      841 cggttctttc tggtgtttct ggtgccagaa agacagctgc ggtaaggcaa gttctgacct
//
LOCUS       KCLA01002331             991 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37909upu ultra-conserved element locus uce-7222,
            sequence.
ACCESSION   KCLA01002331
VERSION     KCLA01002331.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37909upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>991
                     /note="ultra-conserved element locus uce-7222"
BASE COUNT          283 a          198 c          195 g          315 t
ORIGIN      
        1 ataacaaaac acttattaag gctaacttta tgagaaaatg ccttcatttt tgtattcaaa
       61 gcactgaata aggcaaagtc agttttcacc agctgatttt gcaggtgttt acttattttc
      121 tccattgttc ttccacatta caaaaggtat gataccaagg tggagatttc ttcctttccc
      181 atctcgtttc cctgctccct ggcaaagcaa ataaaatttc atatttttct ttctaagaag
      241 atcactgagc catctgaccc aaccagtagt ggcaccaatt agacattatt caaaattaat
      301 aactactatg atgataacaa atcaaaagat tgagtcttct gatgagagaa taattttaat
      361 taatttaatc cttgttgaaa gatcagctgt gcacagtcct gcttaccagt ggggcccatt
      421 tgtccctgtc tgtctctgtc acccaaagcc agtgaatatg atcagtagcc agcacttagg
      481 gaacaataag aaacagattg tactgtcagg cttcattaaa gatcatcatt agtattccaa
      541 tttggaaaca gtcaatctat cccaaccttt taccaattat tttcggctgc ttttgtgaag
      601 tttggttcag ctgctaaatg taaaaatgcc atgcaggctg ttttaaaaca gcaggctgtg
      661 tctcgctaat gcctgtcagg ctgcagctta gggacaaact cgggggaaat acatgctatg
      721 cagcccagcc ctacatgata tcatgtgcag ctgcttatga tctgagtatt tatgggcaat
      781 gaaactttct taaacttgaa gcttaacaaa gatgaatgga aatgaaattg atatggcact
      841 ttctttcatc ccactattga ggtttgggtc ccaagggtgt acagcactaa ctggctggct
      901 gggctctcct gctctgcaga gggcttttgg ggtatgttga tgagggaggt ggaatttgag
      961 atgtgtttac agttcacttt atcttttctg c
//
LOCUS       KCLA01002332             987 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37925upu ultra-conserved element locus uce-2419,
            sequence.
ACCESSION   KCLA01002332
VERSION     KCLA01002332.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 987)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..987
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37925upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>987
                     /note="ultra-conserved element locus uce-2419"
BASE COUNT          256 a          262 c          207 g          262 t
ORIGIN      
        1 gttgttttat tactgttatt tatcttgatc gcatttgttc tgctcagaag aaacaaaaca
       61 caggcgctct ttgctttaat tgccgggccc attcttcagt aaacaatgaa aagtgattag
      121 agatgttttt tggcacgcac agcccccaac cacctagtga gagttcaaag aacaaagccc
      181 gtgctcactg gaaggaacca cgcagctcac ccaacttgtg cgtctttgag tcgggcgttt
      241 ttcagcgtct ttaccccatt tatcactgca caattactgt cgctgctgtg ttgtgtcatt
      301 aggcgtaagg ttacgagtgc cagtcgggat aaaaaaattg ctgtaatgtt ggcataattt
      361 ttcattatca tcttcattaa ccacagctag tgggagtaag agtttatcct tgctgttgtc
      421 atcgtcatga caacgctccc aaagcttgtc tgccgagagt tcaccacaca caaaaaactg
      481 aatgtcctca ttattccgct tctcacactc tcacccatgc caagggtgat ccgagatgca
      541 cagggccctt gatttatccc ccgtgatttc tcttgacagc ctggtatggt gtctcagctt
      601 aaggcaatcg gtctgatttc acagtttaat tactgctaat ctgaagaagc gtggccaatg
      661 ctaatgagcc agcagcaatc aaagccataa tggctaaact cgccccgttt cattcttctc
      721 tttttatgaa aacacccctg ccccgaaaca agccagcgat gtctctttct ctgcacagcc
      781 gcaccgaggg aacacacgag cctcctgcac aatccagggc tatttcggca gcagaccacg
      841 agattccttt atattttcac ggaatcctag aatccttagg gatgagaagg gacctggaaa
      901 gaacacccag tccagcccct ctgccacggc aggatcaccc agacccagtc acacagccag
      961 gtaggtctgg aacgtctcca gagaagg
//
LOCUS       KCLA01002333             476 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37940upu ultra-conserved element locus uce-3733,
            sequence.
ACCESSION   KCLA01002333
VERSION     KCLA01002333.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 476)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..476
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37940upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>476
                     /note="ultra-conserved element locus uce-3733"
BASE COUNT          152 a           83 c           89 g          152 t
ORIGIN      
        1 ccaacaaaca cactacactg tctggctgtt gcactttttt tttcccagtg tcccccttta
       61 tctgcctcaa ccaatctcca aatgaatgca tgtctatcat ggccttagct ttgacactct
      121 ggatatattg attaatagtt gccctaagct ccttttagca aatcaaattt tcacttttag
      181 caaggatttc gcctctgatt tattcagcaa agtgaaatgc actaaattga ctttgacatt
      241 cagggaaaat ggctgaaaaa caaagagggg aggaaagaga tataaattgt gtggcagctg
      301 gagacttcaa gcataaaaga ggcggttttc tatagaatat tgttggttaa tttggaaaca
      361 cacatttaaa catgagtgga aatgatgttc ttaaaatcgg atgtttttta gactgaggat
      421 ttggggtata ataaggttaa cttagtaaaa tgcaatatat tcaactcaaa ttcatc
//
LOCUS       KCLA01002334             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37955upu ultra-conserved element locus uce-4593,
            sequence.
ACCESSION   KCLA01002334
VERSION     KCLA01002334.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37955upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-4593"
BASE COUNT          245 a          200 c          149 g          249 t
ORIGIN      
        1 tttgcaccaa atttaatccc tggagggttt aaactccaat gagaagacac tgtattacac
       61 caattcagac agcggttaca cgaggtcttc accctttcag gtatctcaca ttgggattct
      121 gcctctgatc agtccttggt gcagtatgtc agatattctc cccacatttg ggctgcaaac
      181 aggcattagc ctccttccat gtatgtactt attaggaaag gttttgcacg gtataatcga
      241 agcccgacag tttttaccaa ctgcagctta agaggaaaag acacacaatg tgatgttttg
      301 tgcctttttt cctcttttgg ccactgaaaa ggtgcaaagc gctgctaaaa gtacattttc
      361 taaccctcaa agccctttaa gaaaggtaca caatgcaaga atacgcagct gcaattttaa
      421 agaggccact gttcctttaa tgcccagctg gtcccgagat gtaataaaat tgacatattg
      481 attcctttga atttacaaat gcctgtttca taaactccat ctccaaagcc taggcatctt
      541 tagagcactg tcattttttt ctccaaatgg atcaattatg tgcccacgta atcctgttac
      601 ctgtgaaatc catgcatact tctcccattt gctgcagttc ccaggcggac aaacttgcat
      661 tatgtacgca taaacaaaca gagcattttc ctgatattag ggattgtttt caaagtgaaa
      721 agcaatctcc tgggtccttt cctcagaaaa acatacatag cgccgtgttc ctccgagtaa
      781 cctccctgtg ctatacgtat aattattaca caacgcagcg aatcattaaa aaaacatcaa
      841 gtc
//
LOCUS       KCLA01002335            1004 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37970upu ultra-conserved element locus uce-7383,
            sequence.
ACCESSION   KCLA01002335
VERSION     KCLA01002335.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1004)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1004
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1004
                     /note="ultra-conserved element locus uce-7383"
BASE COUNT          337 a          141 c          180 g          346 t
ORIGIN      
        1 aataagttat gcatgttgtc caacagtaga tgaatacttt ttccacgaac aaaattttta
       61 caatattaga tgaggactaa tgaggacatt tcagctataa tttatgggct gaaaaagagg
      121 acattctcta atttgtctgt gcagtgatgc attgctatga ggcttggggg aagggtgacg
      181 ttccagcaca aactgataag gaagataaga atgcaatata ttcttcttac acttctaatg
      241 ggagttttgt atgaaaaagt ttaatacaca gcccttggtt gaacaaacct ctcactgtaa
      301 aatgtttacc tttaatgaca catactatta tttcatgatt attttaaaat acacttaaag
      361 aattttacat gttaaccagc tactaagaat gccttaatag agaactaatt tttgttagag
      421 atgtctcgac aatttgaatt ttatatgcat gcattatgtt ttcttaaaat ggggaaatta
      481 tgcatctgaa ggaatctgtc tagaataatg gggttctata gaggttactt taatcacgtt
      541 caccagcagt tatagctgtt ttacatctta tttgcaacaa aagggaactc taattatctt
      601 caaaaagagc ataaaatggt gtgctttgct gctgatgtaa tgttgatttg tgaatgctgc
      661 tgataggaac tgacaactaa atacatgtca cacttttaag aaatcagtgg tggtgacagg
      721 ataaccctct tttgtgacct ggggaccagg agatggggta tatatttgct tgctaagtag
      781 aaacaattta cagttttcac tttaaaataa aaataaaaat gctgttatag aagggctatc
      841 gattattttt aacaatgcac cacttcaaaa gctgtcttct gaaaattaga tttagtgatt
      901 acaattcctg atgaaagaga aagaattttt tgcttatagt cttgttttta ataaaatatt
      961 tcctcttaat tttgtatctc aaagtattta tagaaaatat ctat
//
LOCUS       KCLA01002336             233 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 37999upu ultra-conserved element locus uce-1922,
            sequence.
ACCESSION   KCLA01002336
VERSION     KCLA01002336.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 233)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 233)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="37999upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>233
                     /note="ultra-conserved element locus uce-1922"
BASE COUNT           68 a           43 c           49 g           73 t
ORIGIN      
        1 gccgtaaaca ttataaacat attcaaataa gcttaacaca atctgccatg cttatttctg
       61 cctagatcat ggaccagcga aatggttaat gcaaatggat ttataatttg ctttgggggg
      121 ccagtttctt ctccttattt attagcccag ctgatggggc agatttgatg aggcacttct
      181 ggaataattg agtcatcaca caaagaaggc tgctagcatt cagagtggtt tta
//
LOCUS       KCLA01002337            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38013upu ultra-conserved element locus uce-2613,
            sequence.
ACCESSION   KCLA01002337
VERSION     KCLA01002337.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38013upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-2613"
BASE COUNT          248 a          261 c          287 g          263 t
ORIGIN      
        1 agtgggaaag ggacgtaaat catcctcctc tcgcacggat ggaaatgtgc agaggtttgt
       61 gaccagtgtt ttctaagtct tgcagagttc acttctcctc tcttgttacc tctcccggtg
      121 ttgtccagta cagcactcaa gctgttgaac cgctgtcctc tttcagtcca caaggtgcac
      181 taagatcata gaaagaaagc tgtcaggact aatttgagaa gggggtgtca gcctcgttag
      241 ggaggctcat tcctcttggg tcatctcgag agaaaaaaga gcatgaagac agctccatcg
      301 agagggagac ggctctatcc ctgggccctc ccaacctttg tgtctctcgg cgccccacgg
      361 gtgggttgta gtaccgtgca acgtgtttac gagttctaac atctctgagc aactgcatcg
      421 cttcctccgg gggctggaga acttgaagct ttgcacgtct ggcaaagatg agggaatttg
      481 ataaccttcc ctctttaggt cttagggtga gccgaacgcg tctggcctgc caaggcacaa
      541 tttaatgggc ttctgaaaac actccaaagg cagacgcaaa tgtgtggatg ggcagccagc
      601 cagggtgacc cgggggatgg ggccagcctg attttcagca gggtaaggtt gtgaaggaat
      661 gttggaggac aaagccggct gggggagtgc gctgaaagcc gaatgtttga ctggaatgga
      721 tttacagagc ttgaacccga ctctgtagct gaagagcgaa agcattccca cctgtccggc
      781 cgggaaaggg aaatggcaaa cgtaaaggat gcacaattaa tttcaattac cagctgcacg
      841 tgtgttttgc ttggatgggc gctgtctgtg ctccctgcgc cgcgtttcag acccggtgcg
      901 ggaacagaat ccacaggaaa cagacgatcc ttaggcatct gcttattcct cccccaaaac
      961 ttttggtcat cttttctttg gaaatcttga ctattggtca aggaatttta cccgcatgat
     1021 ctcctccaaa cgacgcctct tccctgtgag tcctcccat
//
LOCUS       KCLA01002338             935 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38028upu ultra-conserved element locus uce-7369,
            sequence.
ACCESSION   KCLA01002338
VERSION     KCLA01002338.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 935)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38028upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>935
                     /note="ultra-conserved element locus uce-7369"
BASE COUNT          258 a          186 c          207 g          284 t
ORIGIN      
        1 ctgggcacaa aaacagagaa atgtgaattg atagccctgt ggaaactgaa acagaaaatc
       61 ctctttggag tgtgtttgga aggtccagca attgtaaaca cctgatgaaa acgtaaggaa
      121 ttagacacca gaaaagtttc ccttagcttt actaggagaa ttgtactttt tttcagagca
      181 tcagcactac cctccagtgt aagcccagta attcttcctg aatgctacca tgctgggggc
      241 atttgaagct gtacctttga aaataaataa ggagtgaact tgtttggcat tccaggccat
      301 tgaccagagc cagggaaccc gatgagcgct cttctatatt ttctttagct ttatttttgt
      361 gggcatcatg catgtttaaa atggttatac atttccttga gccgatgtaa tataaaagat
      421 ttactgttac agtttgtgtg tggccaggca atggcatatg gaaaacatgt ttcctgctat
      481 ttaatttaat tactctaatc acgtgccagc cccgggcatg tcattctgga cctctgaggc
      541 tctttgtctg tcaaagagat ggacaatatc ttggctctgt ttagttgctc agcgggctgc
      601 agataaaacc actgaaacac tgaatgtttg cgtaaccaaa gctccgcatt ttaaccattt
      661 ggcttcaaaa aagatgacat tttggcctcg gtgagctgaa aaggaaatat tagggctatg
      721 gagaactgtc actgtttggg cttaatagat gaaagagaat actttagcct tctggtcaaa
      781 accgagcttt gttaaccgaa acctaagatg tgcatggccg ttgttttcca gttgccagcc
      841 agcaaaggca gctgcagaag tcttgtttgt agctgcttgt ttcttacatg gctagccctt
      901 ctgtcaacgg cttcagcaga ttttgatttc tttca
//
LOCUS       KCLA01002339             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38044upu ultra-conserved element locus uce-6586,
            sequence.
ACCESSION   KCLA01002339
VERSION     KCLA01002339.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38044upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-6586"
BASE COUNT          212 a          229 c          191 g          232 t
ORIGIN      
        1 cagttgcttc ttgctcacaa caatgcatcc cttgctccac tggcttacct attcccccag
       61 gggcatctcc tcttcctggt gtgatccttt tggcctcagg gtgtctcagg gtctacccag
      121 ctagaacatc actcagtgag gcaagaggaa ccatgctgaa ccacagggca gccccagggg
      181 gatggacatc actcagtccg actccagtgc agcatcatgc agatttgaat gggaatgagc
      241 tctgctgcct tcttggtgtg ttcaaagcac acggggagac ctgcttgaac ccacctcaca
      301 gttcccccat gctgtgcagg tccagcagag ccccgtgcat ggctctgcgc agcaaagcaa
      361 ggctctctga atgcaaattt catttctgag ccactggcgc tgtttcaaga gccggcagcc
      421 tcggagccct tctcggtgtt acatatgtaa cagcctcatt gaacttgaca tgtcaaattc
      481 aggccatttg tgcaaaatct ccctttaata ataccgtttc atttcgctca aatgagactt
      541 gaatgcatgt aaaatggaaa aggatattta agcgctaaca ttaggcagat gtcttgccag
      601 aggccgattg aatatatgag attttgaagt gcttaacacg ttttcggtgc tccctcttag
      661 aatatgtcac ctggctttct tttttctccc cctcctttct tttccccctc tttaagtgaa
      721 gggtataaat tgaaagaaaa caaaactaca agccttggtt ttatggggtt taactcttgc
      781 caggcaagcc caatggtgtt ccacctcaaa agaggaattt ccaagtgtct cacctccaca
      841 gagcacatag tcacagagcg ggag
//
LOCUS       KCLA01002340            1002 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38060upu ultra-conserved element locus uce-7761,
            sequence.
ACCESSION   KCLA01002340
VERSION     KCLA01002340.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38060upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1002
                     /note="ultra-conserved element locus uce-7761"
BASE COUNT          234 a          225 c          253 g          290 t
ORIGIN      
        1 tttgaggagg aattattaat aatttcttat gctgtaaata gtactctgtg gagaaaacct
       61 gttaggggct ggtatctaag gaatgtttag gggatgaatg tcatggagaa ttacaaaaca
      121 tgtggcagtg taaaacaagt atctcttggc tttgttctgt ccaaaagccg gtgacattca
      181 gacaaagcgg gccaagccca gccctggtgg aagcagctag cggtgctccc agcctggggt
      241 cccaccacct gttaaagcca aagctcattt ttatcctcct ctttgacttg gcaagtgtct
      301 gggtgcagga gctgggcgcc cgggctggga ggggtgtgtg tgaggccgtt ggaggagaat
      361 taggttatta catttcctgc ttaattcttc atcagggctg ctgcctgtat tttctgcagg
      421 aaaatcaatg cattctgatt ctgtaatttc ccatggtgcc tcgccgggcg cgcgccgtgc
      481 cgtgggaggt gacatatccg gtcatggcag cttgaactct tttttccagt gaaagaattc
      541 attggaattt cacaaccttt gcatgctttt gtgaaaacac tcatttgtgt ttgcgccaac
      601 ctgctaatgg cggatgccgg ggctggcgaa tcccacctac gttcggtgct cgttatggca
      661 tggaatgtgc tgttaataat gcatctgcga aactcagctg cgagggagcc aagtaattat
      721 cccaccgtag cgttccctgc ttcagtgtca tcacaactgg ggcttcatta aaagtcctaa
      781 cagtagagat gttgtgtggt gcagcctgta tatatatttt ttcatttaaa ttatcagcaa
      841 tgccatggct cagaggtaat ttgacttttt gaaaccgtgg agcccctgtg aatttccttc
      901 ctcctctccc tctcgctgcc gcaccagctg atcagcccca gaagaacaaa aggtttatct
      961 gaagctatga agcatatatt caccagcttc tggcgtctag at
//
LOCUS       KCLA01002341             250 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38076upu ultra-conserved element locus uce-6337,
            sequence.
ACCESSION   KCLA01002341
VERSION     KCLA01002341.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 250)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 250)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..250
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38076upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>250
                     /note="ultra-conserved element locus uce-6337"
BASE COUNT           73 a           42 c           75 g           60 t
ORIGIN      
        1 ttttgcagac tttcgccgcg gatatttatt ataaccgggg aaacaaagcg acggtctttt
       61 cccattctta caggattgtc tttgtctagc tgcttgtttt gatgggtgta aaacaaataa
      121 gattagactg agcagccgaa ctgaaagcga tagctgggag gaaaagccaa tgaaaggttg
      181 ccggggaaac gagcataggg gaagctgagt gggggagcag gtggcaatca tgtgggaata
      241 ctgcaaacag
//
LOCUS       KCLA01002342            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38092upu ultra-conserved element locus uce-2790,
            sequence.
ACCESSION   KCLA01002342
VERSION     KCLA01002342.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38092upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-2790"
BASE COUNT          300 a          186 c          212 g          317 t
ORIGIN      
        1 ctgttaccta ttatggggta agaacttaat gcctcatttc tcaatgagtt tttacagtaa
       61 caagatcgct gtatcacgtt tgtaaatgaa aagcttatga acttgcctgc attattgttt
      121 ctaaccttta tgcttctaaa aagctctcaa agttgttgtt gcttataaaa gtggaaaatg
      181 gacctgataa aaatgtttag actgcagggc tgtgttttat ttatcatatc tcaaaaggac
      241 agtgttttct tgcatcatgg tcaaaacaca agcgaccttg cttgttcatg agtgctcaaa
      301 gcctggagat aagaggcaaa ataatagagt acaatagaaa gagtgtagtg taattatttg
      361 tggcttgtca agtgaagccc tctcaggccc caagtgattc aaatctggga actctgcaca
      421 attctgtaca ctaactgtag tcagcatcag agaaatctca cccagcttct ccgacagtac
      481 tgaaattgca tcagtttgtc atgcactgag catgccagct acacacaata tcatttgctt
      541 gcaaatgggc ctggccccaa tgccctgaga cacattcttt ggtatctgac tcttggcctg
      601 tgatttgtca tgtctctagt gctatcagcg taaagtaatt ttaatagatt ctgatggttt
      661 gcttgtggaa ggtaaagaat gcactacaga ttgtgtcagg tagctttcta tggcacatag
      721 catggccttt atgatggtga taaccaagca aagagtatgg aggaatgaga agcctatttt
      781 gagtggtatt taatgctcac cttcacaacg ccctgctgtg gatatccttg ttaagtcagc
      841 aggttcaaga acgtagcagc tcaacaaagc agtggcagtc atggtttaga attgttaaca
      901 gatggaacat acagtcaaaa atcagtggct ggatttttcc ctattgagaa agaaattaca
      961 cattttaaaa agtaatttcc ctggttaaag tatgcatgtg tttaattctg tttta
//
LOCUS       KCLA01002343             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38108upu ultra-conserved element locus uce-5132,
            sequence.
ACCESSION   KCLA01002343
VERSION     KCLA01002343.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-5132"
BASE COUNT          165 a          113 c          102 g          148 t
ORIGIN      
        1 ctgctcagag cccggggggg cagttacagc tgaagagact tgtctcccac ccattactgc
       61 ggtttactag accgcatttt tccacactcc agtctctcta gtaaaaggga tctcaagaaa
      121 tctcatttca atttcaagga cctcttaggg atagttgcta atggttatgc taattggcag
      181 agggtctaag tgacagttat gtcctggaat gattcgcaaa tcacattttc ttggagctta
      241 ttagcagact cattaactgt acaacagtac attactttca gaaattcaaa tctaagcaga
      301 aaattaaaat tatttgctaa atgacctaat aaaattgact acaaagtgct gacaaagcaa
      361 aacctgggct gtatgagggc tctggatttt ggctaaaaat aatctctact tcctattgat
      421 gttcatccct cctctgagag cagttggagc ccaggtgaat ctcagttaga aagctgctta
      481 gatataacaa atgagctcaa atcaacacta acaaaagcag cccagctc
//
LOCUS       KCLA01002344             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38122upu ultra-conserved element locus uce-7483,
            sequence.
ACCESSION   KCLA01002344
VERSION     KCLA01002344.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-7483"
BASE COUNT          153 a          135 c          181 g          191 t
ORIGIN      
        1 aggaaatagc tgggtttgcg gtgttaaatc tgttgtgggg atgaagagaa aatccaggct
       61 aaacatttgg ctgtgcggga gattaggagc ccgttaaaat gaacgccacg agcgctaaga
      121 agccatcggg gacgtggggt gtgttggtta tgttgttttt ctgcttatcc tagtttgctc
      181 tcctctgcag ctgtatggct atgccagcca aagcccctga gaccgagctt tagccgctgc
      241 tcctctgtaa ctgcatcatt acctcactcc aaacaaagtc ctttttttgt caatagagga
      301 tgaaaacatt attggattcg ggagctcatt gcaggcctgc gtgcagctgg ggatgaggag
      361 gatagattta tgaaatggac catttcaaat ggcattatct tcccacagcg aggtacacct
      421 tccataaatc acgggagagc acttggaagg caagcggttg gcgttcctgc cctggattgt
      481 atttgcatcc tccacaacct ggtcttgggg cagtgaggag aagcctcttg tttgtgtttg
      541 ttcttcccta ataattaggg tgctttattt ggagagcagt ttcagaaccg gctttgctag
      601 atgaatgttt gccttctgta tagctgggga tgcacactga gttgtagagt catcagggat
//
LOCUS       KCLA01002345             770 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38137upu ultra-conserved element locus uce-3028,
            sequence.
ACCESSION   KCLA01002345
VERSION     KCLA01002345.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 770)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..770
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38137upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>770
                     /note="ultra-conserved element locus uce-3028"
BASE COUNT          269 a          130 c          127 g          244 t
ORIGIN      
        1 aaaaatcaat gtaagttact agtttggaaa gtttagtctg ttatatttga ttactgggat
       61 aaatacaatg acagtggagg aatttcaaca gtaattttga agagttttag tacattgtgt
      121 tgtacaggtc tttataaaag gtttttgttt ccaaagatgt tattggggtc cacatattcc
      181 ttaacagatt taagcattcc caagccaaca tcagagatgc tctccttcat ccagtgcttc
      241 cgtaatttgc ctactggaaa aacaaaacca gaatgtttca atatatggca ggattctaga
      301 agcaaattaa tcttgtgatc atgaatgaat aaacactgcg tgataaatgc tttattcaca
      361 aatgagaaat gttttgcttt atttgattta ttgagcccac tagactatca agctcattaa
      421 gctcagcata ctcccagagg aagactgtgt tccacactgt ctactttctt tagaaactat
      481 gaaatttaga tgaagctttg gctgaaatca cattactggt aataagcttt agaaagtcac
      541 caagctaatt ttaagtagga aactgtcaag gagattacta aaaagcagaa cacatcctga
      601 ctgcttttaa gtaaaaacat aactcaaaac ctgttttaga ttttcgaagg tttaaagctt
      661 agttttaaat caacggacta tcttatttaa ttcaaaaact ttcacacaga ctggtaacta
      721 ctcagaccat tacacacaag cttagttacc cacataaaaa gaaagatgta
//
LOCUS       KCLA01002346             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38152upu ultra-conserved element locus uce-4921,
            sequence.
ACCESSION   KCLA01002346
VERSION     KCLA01002346.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38152upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-4921"
BASE COUNT          160 a           85 c           59 g          111 t
ORIGIN      
        1 aaaaaagcac agagaatact gtaaaataaa atgtaatact ttacttttat gtatctatag
       61 tgttccatca gactgataaa ttacaaatgc ataaagcaaa gcaattgttc aatgcactca
      121 gaatggtccc ggatttaatt acaagtaaac tacattaaag atttactgta cagtaaacaa
      181 atgggtgaaa aactgtaatt tattgaaact cataactcaa aaaatataag atgctgtagt
      241 gtacaatatg ttacacaaag caccctaggg tgcacattca agtcaagtaa ctccatcacc
      301 ccccaaaccc tggtacccta gtacttgttc catatacaat catgcacatt tactcttcaa
      361 gaggaagccc ccagtattct gatgtgttaa atagcaccaa acccagcaca gatca
//
LOCUS       KCLA01002347             675 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38168upu ultra-conserved element locus uce-4124,
            sequence.
ACCESSION   KCLA01002347
VERSION     KCLA01002347.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 675)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..675
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38168upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>675
                     /note="ultra-conserved element locus uce-4124"
BASE COUNT          219 a          105 c          142 g          209 t
ORIGIN      
        1 aagcttctta gagccttcct taacagctgg caccctgaga ttgtaagtat tcgtgtttta
       61 ccactttttc acatgcaaaa tgtgttgctt gggagttttg aggatcagat tgatgaagga
      121 gagttcagag ccagacgtac agtataagag acaaaggttt agtaatgagt tcaaaattta
      181 caaaacacag aagcaaatat ggctttaata catgatgtga ccctttataa ggcttgaaat
      241 tactcttcaa aaatcattct ggcttgactt cagagccgag tggattgtgg gataccacag
      301 attgactttg agtagtgggt tggtattgca ggaatttttt aatttcctgt aactcacaac
      361 aattttcttc cagttagacc ttatcctgct gcagtgtatt tactgaacaa tttagtacag
      421 tgtataagcc agatcagagg cacatgcata cactcagatg catctacaca cacagggcga
      481 ggaaaattaa attactaatc gcaaaatgta aaacgattac aagagaaagg ttcagtgtgt
      541 tgatatttat gttttcatgt gcatgatatg tttagtgtct aactggtaca gggaagaaga
      601 aactttgggc tgaaatgtat ttgtttcatt ttgaagcaaa taaatatgat tcaagtggca
      661 ttaatgaaca gaaaa
//
LOCUS       KCLA01002348             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38184upu ultra-conserved element locus uce-1708,
            sequence.
ACCESSION   KCLA01002348
VERSION     KCLA01002348.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38184upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-1708"
BASE COUNT          190 a          118 c           91 g          198 t
ORIGIN      
        1 cgaattcttc acccaaaaca agaggaaaga tgaagaacca cattaccgag gagtattttt
       61 agtggcaaca aaatcataac catcaaaaga atgttcactg cttgcagttt tccatttcat
      121 tttttgtgtt tctttcccca atcatgtctc aacaattttt tgaaccaagc agaaaaatga
      181 tcagaaaagc tgcatatctt tctgctcatg gaataataag cttcctttat gcaatttgtt
      241 agaggttcat tctagaacga cctttttctt atattatccc tttaaatcat cactctttac
      301 agctgaatac acatgaaatg ctctggagtt gtactaaggt taagcattaa agttgcatgt
      361 caaaaatcgt attagtcaaa atcattatta taagccattc tacactcaaa gaaccttgaa
      421 aaaattaagg ttatgcagag agtttgtgag ccaactcttt aatcacacac tgaacttcag
      481 atatatagtt ttgtacaatt agcagcactg ggctaatggt tatgggttaa atggtactta
      541 caagcacttt tgtttgttta atttagtcca ggctcttgct ttcactctcc caccccc
//
LOCUS       KCLA01002349             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38214upu ultra-conserved element locus uce-2835,
            sequence.
ACCESSION   KCLA01002349
VERSION     KCLA01002349.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-2835"
BASE COUNT          224 a          158 c          134 g          217 t
ORIGIN      
        1 tgctgcacct tttcctccag ccactcataa atgacagaga tcctgtggtt aagagtttcc
       61 tgatgacttg gtatggaggt gtaaacagat aacgatcaca aagagggttt cttgtagagg
      121 tggactgagt ttgctattca tcctcccccc caccattaat ttgaaagatg aatgtgccag
      181 agtcctcctt ccacaggtga agtcagcaaa ttggcaagga cattacgggg actcactttc
      241 agaaaaaggg gggaattttt tctaattctg agcaacatta cccctcacct ctgaaccaag
      301 aaagacttta cgcaatgtca taatttagca aattacttcc tcaaaggaag gtcaaacatt
      361 ttaccattcg atcaatagga agcgacttac aaatcatgtg tattgatcac tgtaatcatt
      421 cagagaaatg tagggcagac actaaaatca catgcactta gtcttaattg cccacattaa
      481 agcaattatg ccccaaaact gtcattgtct aatgctatgc acagtaccca gcatggtaac
      541 ttttagccat acgtatttaa tcataaatca gcctcttagg tctgtttcac tgaagaccta
      601 cactattgcc gtaattatgc aaatataact gcgtcttctt ttgccagtgt gtaagatcac
      661 aggaaaataa gtcctcgtat taatgcagct ggtatttaat acatgtattt tacagccatt
      721 ctctgtgttc atg
//
LOCUS       KCLA01002350             414 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38228upu ultra-conserved element locus uce-1295,
            sequence.
ACCESSION   KCLA01002350
VERSION     KCLA01002350.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 414)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..414
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38228upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>414
                     /note="ultra-conserved element locus uce-1295"
BASE COUNT          139 a           56 c           68 g          151 t
ORIGIN      
        1 aaaccctagg aaagtgttat ccaatgggca gatgttaact taaagtgcac attgtttgga
       61 aaaggagtta attaacaact tattaattgg atagaaagtc tgaaactgtt gtacttctag
      121 caaatacata attttcttca agtattatta aagcgttttt gttgtaccta ttaaagattc
      181 ttgtctctaa gttaatttca ttatgctaat aagctatcat cgttacagaa cctaagcttt
      241 gatccatgtt aattgtcgtg atcttcaaag acaaagtcac cacttacttt aaatgaattt
      301 tacatctttt taaagaatca cacggaaatt aggggaagta attaattttt tattatgtgt
      361 ctcaatattt ttaagggagg aagtcaatgg tattggctgg aattcatttt aaca
//
LOCUS       KCLA01002351             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38242upu ultra-conserved element locus uce-7582,
            sequence.
ACCESSION   KCLA01002351
VERSION     KCLA01002351.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38242upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-7582"
BASE COUNT          263 a          147 c          124 g          233 t
ORIGIN      
        1 tacatcataa aaaggccttt acaaaatatt attattgaca gaaatcttgt gctattcttt
       61 tcctcccgaa taactcaata tgaaaaatta gctttttcct actttaaaca aacatgttct
      121 tcatgtagca gtgtatttag ggggaatttt aaaaagtgat aaaagcacca aagtctcaaa
      181 actgtacaga gaaaatacct aatagaatct gagactgagc acaatattat cagtgtcagc
      241 atactgatga cccagatggt atttgtatgt ttgaagtatg acatctttac tcctctgtca
      301 tccaacacaa gtaattaaca ataatcaagt gggtgttaat tggatataat ggaacaatct
      361 ccagtcagtc tgagcctact atttgcctct tactagtaat tatgaacagt aagtactcac
      421 actgatctcc ttcttctcac tgaagccaaa cagaggtgca gtatttactc agctgatagc
      481 ttgttttgtc tgcaatttag tctgttttaa gccaagaaac tcataatttg cagtgccgtc
      541 accagctgcc aggatcacac aaaagaatgc aaggccctag atgacagcaa ttcattatat
      601 atcatccagg aaaggacaat tattaattaa actgaccagt tacaagcaca atagccaaaa
      661 catctggaca tgtaaatatg gaaaactatc ctttgtatac cataagttca gatttcagat
      721 ttgtatttct gacagatgct gtttaagcag aaaacttccg agctagt
//
LOCUS       KCLA01002352             468 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38258upu ultra-conserved element locus uce-4330,
            sequence.
ACCESSION   KCLA01002352
VERSION     KCLA01002352.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 468)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..468
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38258upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>468
                     /note="ultra-conserved element locus uce-4330"
BASE COUNT          151 a          104 c          105 g          108 t
ORIGIN      
        1 tcaggataaa aataaaaggc agagcggcgg cgtgcaccgc tggttgggct gttggctggc
       61 tgagcgcaga ggcagcctgc agttaatcag ccttctttcc ccactaactg tcactgcaaa
      121 caaaggaatt agcagcaggt ctgtagggag cattgagata atttggctgg ctgaagaaaa
      181 gagaaagaaa agaaaagcaa aacagaatta cagagaaatt tacttgcact gacctctcca
      241 taaatattta gatataatca tcattacctt gagtaaatta agttataaac agtctccaca
      301 attgcacatg atgaatgcgc gtcggcatcg gagagcactt tattgcaagt taatgtggaa
      361 acagagcacc tcaatcaatc aggatgcaga agtgctgtct gatgatatca gcctatctca
      421 acctattcca agtggacacc gtgcattcgc tcacccactc acacccgc
//
LOCUS       KCLA01002353             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38274upu ultra-conserved element locus uce-5565,
            sequence.
ACCESSION   KCLA01002353
VERSION     KCLA01002353.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38274upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-5565"
BASE COUNT          201 a          117 c          142 g          239 t
ORIGIN      
        1 tatgtcttca tagaaaaagg ggagagagag acacactgac ttgctaagaa gtgtttgatt
       61 aatatgtaaa gtaatctgtt ctgaagaaac ctattcctga aggaactgta cagcatacat
      121 aaatcccgtt acttctctgt ctccagataa gtttagcatt gtgtttgtgg tacacacagg
      181 tagattaata gatacataga tagaatcctg cgtacttact gctttaagct attgcacatt
      241 caaacagatg ttgaagctga gattagcctt tttttgcatg tgccagtagt gtgcaaacct
      301 tttaaaggca tctatgaatt attgctttgg ttcagcatga gtgcagtaag aagaaatgta
      361 cctcatctgt aatacactgt gtagactaat atcagcttct ttttttctta tattgcagtg
      421 agatattgat ctggtaaaat ggtaccatat tggagctgtc tgttgtggta ttcatcatgc
      481 tgtcacatcc ctagtgcctt ggagttattg aaaagcggaa ttgagggaat tctgtcattg
      541 tgtgttgcaa tccattcata agaaagttta caaaaacatc tgaagtacta ttcttgctta
      601 tttatttatt tacttttagt gagagctgtt cacttctttg gaggccgaga accctcctat
      661 ttcaggcaca gggacgttaa tagtttaaga tgcctcttc
//
LOCUS       KCLA01002354            1202 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38290upu ultra-conserved element locus uce-3743,
            sequence.
ACCESSION   KCLA01002354
VERSION     KCLA01002354.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1202)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1202)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1202
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38290upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1202
                     /note="ultra-conserved element locus uce-3743"
BASE COUNT          374 a          298 c          270 g          260 t
ORIGIN      
        1 acacagcaca ccacataacc ttgtgcctta tttgcatttt gcatgaaaac agcaaacaat
       61 attgagttca atcagaaatg aaagcagaac ccattctaac aaatggggag gaagcaagag
      121 ccccaattct cctcttggac acgctcacag ctcctcttac agccaagcag agctgggaac
      181 gcacaaggca ggaaaaggcc tcttgcagaa cagaagaacc tgctttaagg acacaacaca
      241 gagctacaat aacaggaaga aagagaagta gaaagagaca tactggagaa gctgaccatt
      301 gcgaaatgct gacaccggtc tcccgtgaat tcgatcggac acctaccgga agaaagaaaa
      361 ccagaaagag agaaaccaga tagcaaaatg acacccaaac agactgaatt gaggcccctt
      421 ctgatctctt ccatggctcc tatccatctg ctttcagcct tcgcccttac ctgcagccct
      481 aagccctagc ccaaagctga caccaagagc catccctgac tagaccactc tacatccacc
      541 gctgtgccca ggaggtttta agtagtgtgg tgcatttttt gtcttcaaac atactttgct
      601 taggatctgg catgtacaat cgcaaaggca gtttctccaa acatctctgt ccgaagaatc
      661 cgtttggaca tctggagggg aaaaggggag aaatcacaga acatgtctgg caccattctt
      721 gaggctaagg tcagaaataa aaagtgcatt gtgatgaatg gaaaaaataa aaagtttacg
      781 tgcatagtta ctcttcgctt tgctttaacc aggcacctgc aacatcagca ttccagctct
      841 atttttgacc tggatcttca agcagtcagc caaacccctc ctttgctctt ctgcctgcct
      901 ctttcctttt caccagctag aacaccagat ggcaggaaga ttgagatggg ctggatgcta
      961 cttccagaga ctatccttgc agctgctatc tagacaagac tagcaagagg caccccagag
     1021 cagtgagcag ctgctcaggc gacagtgagc attgtgtaca gcaagcatct ttccattatg
     1081 accccagaag gacctccagg gtgttccagg gaaaggtgct aggtcatggt tagagagaaa
     1141 gcgtgtgcag agtctctggg gtaacaaaga ggaatggaca gagaagaaag ctgaactgaa
     1201 ca
//
LOCUS       KCLA01002355             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38306upu ultra-conserved element locus uce-5781,
            sequence.
ACCESSION   KCLA01002355
VERSION     KCLA01002355.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38306upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-5781"
BASE COUNT          223 a          174 c          191 g          250 t
ORIGIN      
        1 agtcagaaag tctgtgtctt aactctcagt gcattttgtc tcaggtatta atccattata
       61 tgtagtgttt ctcacgtatg ggtttatcag cagttcagaa tgattcagac cctgttgttg
      121 ttgtgtggta cagtgcttcc ataattcatc tgtggtctaa acaagtcttt tgaaagcagc
      181 tttataagta ataatccaca cattaaccag ctcctgcatg catttctttt tatatctctc
      241 agaaaatagc ttcttaaacc agtgtcaggc tgttgtgaaa aagaaagggg ggaaatgtag
      301 gtcaggtctg tcacacatgg gctaccatta catgaagtga taggctgtct ttctgctctg
      361 gcctcgggat aggagtccct cagccttcca ttagaaactt caataaatgt atatctaccc
      421 tacatgttag tggggggagt caataatagt gtctcgcctg tggggaaaac actcagtggc
      481 actctgcagt aacatactcc agcccagcat tgacatgtag ccaccaccac ttctgcccgt
      541 gtctgataaa agcccagtgt ctctgcagct tgttattgaa ttctcttcca ttgtaccctg
      601 gcacaccatc agaccttgct ctcttgtgct gatttttaac tcccctgcca ctgtggagag
      661 cacaactttg agagacaaag gcttagtcat tctggcagat atgcatcact gcgggataaa
      721 aggagcgata taggattgtg tgtacccagt atgaatctgc cgggtaaata atcatgtagt
      781 gggggatctg ccagagatgg gggagggggg taattgttga agaaatatga ttaaaaaa
//
LOCUS       KCLA01002356             975 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38322upu ultra-conserved element locus uce-1210,
            sequence.
ACCESSION   KCLA01002356
VERSION     KCLA01002356.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 975)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 975)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..975
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38322upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>975
                     /note="ultra-conserved element locus uce-1210"
BASE COUNT          317 a          162 c          188 g          308 t
ORIGIN      
        1 agtaaattat tcttcctaca cagataatgt tccttgggtt ttggacagca tagtgcctca
       61 ctaggaatta aatgatggtg gtgttgacta ccgtggaatt cagcaaaagg catgtcatgt
      121 ttcctggagt tgtagcacac tcacaatcac taatgaattt taaatttcca gccttagcat
      181 ttgaaactta gctaactcca aatccccaaa actaaagcta tttgaaacaa ttacaaaatc
      241 caaggctttt tttttttctt ttaagatttc aataaaatgt aatgttcaca gaaaaatctc
      301 ataaatgtca aaattgctat gggcagaata gagggaaata tagtattttc ttgatctgct
      361 gtagcaattt atagatttca ggacgtggtt tataagaatg ctaaatgttc tggaattaca
      421 gctgttactg atcagtgatt gagccagatt tgtgttattg caccatgttc ttgcttgtac
      481 ctagagagca gtaaagcctc aatataataa aaagcacctg cattttaaat gaaatttcaa
      541 ttgaaaaact taacagccct tcaaattgca gaatttaacg cagcctagta aagcttaaat
      601 aacactttgc ctccacaggc tgagggtttt gcattcaagg tgacttgatt gtgtcgcgtg
      661 gtgaaattat ttacaattaa ggaatttctc tggagggctg cagagtattt gctgttccac
      721 aacacctatg caggcatatg gtcggtcttt ttcagtattc atggaagctc ctgaaccttt
      781 atgataattg aatcagttag agtgctgagt ggagcaagca taaaacctgt taacctaaag
      841 gtcagatctg tgcattgttt atttatcagt aggtgaaaga gctaaatcgg cagcttctgt
      901 cacagtcgaa gtaaaaaatc agctataata ttaacaggga gtagataaat tgcaaaaaat
      961 ggattggaat tacaa
//
LOCUS       KCLA01002357             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38336upu ultra-conserved element locus uce-3654,
            sequence.
ACCESSION   KCLA01002357
VERSION     KCLA01002357.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-3654"
BASE COUNT          164 a          126 c          137 g          169 t
ORIGIN      
        1 agatgtactc aaaggacact caaaatgaga tggacccagt ggtggcacca ggatcataaa
       61 caaatggttt ttggtttgaa cagcaccatt ttctgcaggc agccaatgtc ctctgctttg
      121 caggtgctgg agacgtggag agaaaaagga tgtgtgggca ccacattgcc caaggaaatt
      181 cagtggctgc aagacagtgg tgtctgtcac cagctaccca gcctgttcca gttttcatat
      241 ggtactcaag gggttaatgg agtctatggt agagtgtttg ctttcttctg tttgaaatca
      301 aacatctgat ctttatctga ggtgacaggt ttaatgcctt tcttctctga caaattttta
      361 cccgaagagg aatgcaaaca catacatcgg tgtggtttta gaagtgctca tctgagcaag
      421 ccagtattgg cagcttcgcc ccctaataaa cagcactgcc atgagctggt gccacttgct
      481 taagaaaata tccctcacat catttaaagg actgtacttt agatctgtca ggggtcacgt
      541 actttgacag agctttaggc aaaatacagt attcattcag taatgcaaac ttctct
//
LOCUS       KCLA01002358             635 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38351upu ultra-conserved element locus uce-5182,
            sequence.
ACCESSION   KCLA01002358
VERSION     KCLA01002358.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 635)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..635
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38351upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>635
                     /note="ultra-conserved element locus uce-5182"
BASE COUNT          154 a          152 c          167 g          162 t
ORIGIN      
        1 ctggtgtttt gtgccttcct cttaagagct gggtacaaaa gagtgtctcg gttgacagct
       61 agggagtgct gagtcctcac ccctggaaaa tcaggcctcc ttgcagcatc ttgagtgggg
      121 tgcctcaagc cgaagcacct gaagcttgca gctgctcccg agttgtcatg tgggagccct
      181 tgtagggaaa agagaaacag aggtacacaa ctggaagtcg tgagatgaga aagccaaggg
      241 tttctgattt ctatgccttt gaaagggtta atgctgaggt gctctattgt attaatgatg
      301 gttgtttctt ctcaaagccc gttgggctct ttcaggggcc tctcaaaaca atgagtgcag
      361 cgaggctgtt ctgtctaatt actccaagac agggatgcta aagaggaatt aatgacagtt
      421 gacaagtgca attaataatt atagcaaagc tgggagtcat gcagcaggca gatgacaata
      481 acagggtaac tgtacatgac agctttcatc cgttcctccc cccccacacc cccgcctgct
      541 tcttctttct ttaccctttc atacgaactg ccgcgtgcag ccggcccgca gcgcgtacga
      601 ccagcgagtg agaccgtgct gagatgtagt cgctt
//
LOCUS       KCLA01002359             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38365upu ultra-conserved element locus uce-6565,
            sequence.
ACCESSION   KCLA01002359
VERSION     KCLA01002359.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38365upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-6565"
BASE COUNT          324 a          172 c          152 g          324 t
ORIGIN      
        1 acatatatgt atgcatgttt tatcaaaaca gaacagacat tagttaaaga gaagcttcac
       61 ccacttgcct tgtagcagac ctttttattt cccagcaaca gataggatat aatgtttcct
      121 acaggaaaag tcacttagct aaaattaaca ttatggcaga atttaacttt tgttgttact
      181 tctctaaagc aaacatgtag atcaagacat agctttcatt tccaagagac ttccttgatg
      241 actttgagta ttatataatt acaatattca tacatccaac aacaattctg atttaatact
      301 agagtagctc ttttatttat caaggttgtg tctcaatact tgcacaagct tagataaatc
      361 aggtgttaag caggcacatc accaaggaat ctggaaattc tctcatctgc agccctcagc
      421 atatcttatt atttactgct aaagaaatga ctgattcatt ttgtcatctt tgctctgtga
      481 tttttgctca gctgaagctg cctgccctct tctgcaatgc ttgatcagac ctatttaagt
      541 tgatgccttt gatcgtagac actgaggagc ttgctgactt aggctttgac taaacattcc
      601 ttcacttcaa tattcatgca caaaatccta aatgataact gacagtcaat gtagataaca
      661 aaaacttgta agatgtttcc actattttac tgatgctcag gatagatcta cttgtactag
      721 aggtatcagt caaggtgaat aattgccaat aatagaacaa aagcccaata tattttgctt
      781 tgatgaatag tttatttctc acaaagaagt atctgaggtc agaaaaaaat atgttactgg
      841 aaaattatgc aacattgttt aaaaaaaatg ttttaaattc tttctgtagc atgattcctt
      901 gttttggaag ttaggggcat tttactatca aactgttcca aacaaaatta tggaaatgaa
      961 gctaataaaa aa
//
LOCUS       KCLA01002360             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38380upu ultra-conserved element locus uce-6135,
            sequence.
ACCESSION   KCLA01002360
VERSION     KCLA01002360.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38380upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-6135"
BASE COUNT          150 a           99 c          112 g          117 t
ORIGIN      
        1 aaggacacag gcagttttcc cctaaacgga agggaagctt tgcaatctgc ctcgtgagcc
       61 tgtgctcgca gtgagctgag ctattaattt cttgagtaaa agggatatta cagtgtcttg
      121 gcagggagat gtctcagcag cgggcgaaaa gaaaaaagtg tcaaaacgtg aatgtgcctg
      181 cgataattta aaaaatagaa ggtgataagt tgaaaatgtc aggtaattgg cagacagata
      241 gaaagttaaa ctgtgtcctc agtgaagaaa attaaccagc agctgccagc agaggcccca
      301 aggtcatctg aatgtcagaa ccaagtaagg gccaatcatt cagaaggggt tcgctgctga
      361 tatttgccct ccctggtcat tttccgatct cccaggaact gccctgaact actgccaaca
      421 tgtgttcatt tctaaaaatt acacagattg tgatttatta cccatcacgc taccaaaa
//
LOCUS       KCLA01002361             571 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38395upu ultra-conserved element locus uce-667,
            sequence.
ACCESSION   KCLA01002361
VERSION     KCLA01002361.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 571)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..571
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38395upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>571
                     /note="ultra-conserved element locus uce-667"
BASE COUNT          175 a          105 c          132 g          159 t
ORIGIN      
        1 tggcgacaga attgttttaa agaactgctc acccggaaaa gccgggattt tttaaaatac
       61 tctgaacttg gtagcggcga caggacaatg gaagcggagg agcggccgag ctagctgcag
      121 ccctgctcct gcagcagttg ggtgcaggtc ttcaagacaa atgagatttt taataaaaag
      181 gacagcgtgc cggtgcgttc tgctggcgtt atgcagatga attgaggagt tgtgatttaa
      241 gaagttaata aacagtcacc attttggcgg ttatccaaat gctactgaat agaaaacctt
      301 ggatccctaa atgatgcgta attaaaatta cttaaaaaat cctccttgac aggccggggc
      361 ttagccaaaa tgtaaatgac attaaagaag acaatgaatt taattttatt taatgtccct
      421 ttttgcagat cctcatttac atagcatttt taacaaaagc gttgacctta taaatgctgg
      481 catttgtaca gcttctgcag agttggattt aatcacgctc ccgcaaagcc ataagggaaa
      541 aagctttaag ttctccggtt ggatatggag t
//
LOCUS       KCLA01002362             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38438upu ultra-conserved element locus uce-4446,
            sequence.
ACCESSION   KCLA01002362
VERSION     KCLA01002362.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38438upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-4446"
BASE COUNT          171 a          121 c          120 g          261 t
ORIGIN      
        1 gcacacagct ggtggcctgt cacgacatcg aggtggtgat cattctctgg tgctgaactg
       61 catgttgaaa agacactggc catttaattt tccatttttt tggcaacaag tgaaatctca
      121 gcatgtaatt ttcacaagtg atctttctgc aaaacgaatc actttcgtct gctagtggtt
      181 tttttttaat tgcatggcaa agtaaagcta gtttgtgcat gagcaagtgg aaatgctagc
      241 caaagaaaca tgagttttta aatttttttt tgaacgcaca tttctctgct ttatttaatg
      301 tgacggagtc acgcttttca ttcaccattg cttctctttt cccactgtct gtgatttgct
      361 tgccaggagg agctactatt cttactccta ctatctgtaa gtagaatacg ggtgacttac
      421 tgttttacat gttttgaaga tgcagtatcc ctttttaaaa aaagaaaagt cactctaact
      481 tccacaaagt tttattggta gctacctctt tattcaggct ggaaaaatta cttgcatcat
      541 tgttcctgtt actcttaccc tgtgttgttt ttttaaaagg gatattgtat ttctaactgt
      601 atattgagac ttttgctttt tgctatggtt tttttcataa ctctcatttt agtttattgt
      661 agtcataatt taa
//
LOCUS       KCLA01002363             899 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38454upu ultra-conserved element locus uce-7474,
            sequence.
ACCESSION   KCLA01002363
VERSION     KCLA01002363.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 899)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..899
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38454upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>899
                     /note="ultra-conserved element locus uce-7474"
BASE COUNT          284 a          219 c          149 g          247 t
ORIGIN      
        1 tttttgcatt ttaaaatgta acctcccacc cataaaaccc agttaattac aaaaacggac
       61 acactcaggc cacccttcag ttcttcccaa aactacaggt tggttgacat tttattagtg
      121 attcatagtt aactccgtcc ttatgcttgt ctttttactc agaacaactg agtaataaaa
      181 gtagagaaca gatcatcacc tcatgtcctg tacccttctt ccctccccct gcttttaaga
      241 gtggccttac agtcaagttg cgatttaaat aaaaaaccac atttacactg atgtgaactc
      301 acttgcttgc caattcacct cccggcggga ggtttgggat gctctcagtt gctaacgtac
      361 gcatcacgtg gactaagtct gggactcctt caccctgctt ctttatgatc tctgggaatc
      421 agaagtactt tttttgtaag tgcagtccaa aaaaaagatt gaaacactca gttttataaa
      481 aaggcagctt aacttctgtt aacatagata caagaagatg acagaccata ttcaacatgg
      541 taattggtaa cctgggttcc ataaggagaa gaacctgtaa cagatctcac aacaattgta
      601 cccactgctt ataaagccac agctacctaa tacaagagag aaaaacttct ttaatggctc
      661 tcctgctata cattacatgt aatatctccc caacaaagcg ccctgggcac gaggcagata
      721 ttaacatcag ctttaccgct gcaacagaag ataaaagatt actgccatca cagaaagcgt
      781 aatatcttca agaaccaaaa cattagacat attaaaaata actcccatgg ctggatgtgt
      841 agtggccaat cgctgcccct cactgcatcc cagcaacacg acatttttag gacttctgc
//
LOCUS       KCLA01002364            1090 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38469upu ultra-conserved element locus uce-3392,
            sequence.
ACCESSION   KCLA01002364
VERSION     KCLA01002364.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1090)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1090
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38469upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1090
                     /note="ultra-conserved element locus uce-3392"
BASE COUNT          358 a          234 c          197 g          301 t
ORIGIN      
        1 aaattctatg tatcaatgcc tatggcacaa gataaaggtc tgagcagctg tggaggatac
       61 tgaacagtta ttccttaaag caaatctaac actggacttt tattttttga gtaacccaac
      121 agataaaatg ctccaggaca tctcagctga attgttctgt aattaaaaac tcggggagac
      181 tattcctact gccttccact gttgtttcct caaataataa caaacatcac ttgaaaaagc
      241 aattaatagc aaatttaaaa gagaacaggt gggtgaatat tgcagtcact ggacataaga
      301 tgaattccag gggaaaaaag cctctggcta cgatgggttt tgctgcctgc aaacaagtgc
      361 ggggaggaca agaataaaat aagctcttct aagaaccatt aaaaattcag ttcaacccct
      421 ccctttcctt ggactctgga ttctgctatg acatacaaca agataaaata gtaatgctaa
      481 tattgatagt ttgtccatta caggtcagct aactgtccac tggagctgtt agtttcgatt
      541 tcacaaggcc aatcaatacc caggcatact gtttcaattt tgtccacatt gatttttttt
      601 ataacacccc aaccttacag cattcatctt tctgaaagaa ggaagatttg atttactgaa
      661 gaaaaattgg agagagcatc acaaagattt taccggcaag cctgtgacac ggaaaaaaga
      721 tgaatgtctc taaggcagag ccgcctcttg cttgagggca gccattagaa cacatccaac
      781 caatctgaaa cagagttcct taaacaaccg aaacctgagc ccaaactccg tctcccaaac
      841 taatcaaaag cattcaggaa tcttgatata caggggttct cttaaaaatt cctaaccctt
      901 attgctttga aaataattta tgtccgcagt tctacctatg catttttctg aggagagcac
      961 caccctcttc ccctctaata ccaagagtga atttccatgg tacattagtc agcctattag
     1021 aatgcaatga aggacgatat gagaaaaggg tagtatgtcc tctgagactt ccatccagtg
     1081 ttctccatca
//
LOCUS       KCLA01002365             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38484upu ultra-conserved element locus uce-607,
            sequence.
ACCESSION   KCLA01002365
VERSION     KCLA01002365.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38484upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-607"
BASE COUNT          148 a          143 c          194 g          165 t
ORIGIN      
        1 tgcccccagc tgcctcaccc ggtgtgggcg tctggcgggg gcgcgggagg aggatccttg
       61 acgcttcaga catgagagcc tgtagccaga tgtttgcgag atccgtgctc gttcgcgaga
      121 gggaagcgag tgaaacctgc agctcctcgc gcgggatgca gatcgatgtt taatttactc
      181 gtacgcatgg atggctcatt tggaacagag aaaaacccgg gcgtctcggc gaaccgaggg
      241 gccgcgctga tctgtttctc gtgaactctg gagcggaaat aagtcacggc gtcttaataa
      301 tggtcttgat tttataaatg atttttcccc tcgaaatgag caatccattc attttaatat
      361 gtggaattgg tttgctagca gggcgacagt ttaaaaagac ttccaactgt gacacaagtg
      421 caaccatatt gcttcctatt actcgctaag gtagttgttt agaagagaga atgttctccc
      481 tggaaatgtt taaagtgctg taattttatt taggataatg aggatttata acggtttttc
      541 cgtatgaaaa cctgccttta gacagagcga gatcggcggc ggcgggtacc gagagctggc
      601 ggcggggccc gcgccggcaa ggggaggcgt ttgtgtcggc tcgcgccgcg
//
LOCUS       KCLA01002366             933 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38514upu ultra-conserved element locus uce-2378,
            sequence.
ACCESSION   KCLA01002366
VERSION     KCLA01002366.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 933)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 933)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..933
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>933
                     /note="ultra-conserved element locus uce-2378"
BASE COUNT          282 a          210 c          185 g          256 t
ORIGIN      
        1 tttggtttgg atcagtgtga atagttgtaa gaaagagaca gaacttcttt ttaataatgc
       61 cttactttct ttcagcactt gcaaaagcac gagagtgcag taaatctcga gtcctgctat
      121 tactactgtg ctctgtgcga ttactccacc aaggtcaagc tgaacctggt acaacatgtc
      181 cgctcagtga agcaccagca gacggagggc ctacgcaagc tccagttaca ccagcaagga
      241 ctggcaccag aggaagacaa cctcagcgag atattttttg tcaaagactg cccaccaaat
      301 gagcttggtg agtaacactg gagagggctg tccctaagcc ctcccccaaa gactctccca
      361 accctgaatc cgtcccccag tgtaaaacac ggcaactctt aatctctcag aaatgaacat
      421 gttgttccca ttaaaacctt ctttttatat cagtaccata cgcagtcctg catgcggtga
      481 catctttagc aggcatgcag gaggttatga aactctacct agggaggatc tcacagtgaa
      541 atttttcccc ccagagtgag ctttaatttc ctttctcatg accaaagcaa tttggctttc
      601 atttaaaagt ttctttgctg ccagcagcta ataagtgtaa caggactgta aaacgttctg
      661 agacaaaaaa agattaatag ttttatttga gagagaccag taatttaaaa cataagacct
      721 agtcagggtc cattatacaa taattccaat gttaatgcta ctttgcaaaa tgagcgctta
      781 acttgttttt gctttggttg acctggcgca gggaaacagc taacacgttt tgaatggcat
      841 tccaaaactg aattaatctc tgttccctaa agtgtcctgt ttatatatga aatccagaaa
      901 cagatggttg tgagctaaaa accacatgcg aaa
//
LOCUS       KCLA01002367             701 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38544upu ultra-conserved element locus uce-7109,
            sequence.
ACCESSION   KCLA01002367
VERSION     KCLA01002367.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 701)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..701
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38544upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>701
                     /note="ultra-conserved element locus uce-7109"
BASE COUNT          198 a          137 c          141 g          225 t
ORIGIN      
        1 tgttgtacag ggctgtagat acagacacat tcccgtgtat aattaggggt atagacattt
       61 ggttaacttg aaagctccaa agtgtcgttt gtcacattta tggtaggaac tttaactgcc
      121 ttaaatactt attcttttcc aaagtgactt ttttgttatc cctccacaga aagaaagaaa
      181 atgtacttct tgaaactatt gtatatgaag cacttattag ccgtaattaa atggacaata
      241 tgaatttact acgtctttag gactctggct tgttctggtt tagagcaaga tgattaatgc
      301 aaatacatat tacttgagat aaccatttag cagctaattt agccaaattt attacagcag
      361 ttagaggttt ttcattttag cagacggaga caaggacatg acaaaagcag gaggtgtctg
      421 tgaatgcaca gtgccctcta gtgcacagag ctctgtggca tcgctgcaaa tgtgctccag
      481 tcacaatagc acccaggttg catctagttt aggttttctt tacaaccgca ccgctccctg
      541 ccatagaaga cttgcatttc atccccttct gctgatatgg agacatcggc tacaaatcaa
      601 atccgtttca agttgacaat attttgggtg aagtgttacc gtagacatct gtctttttaa
      661 gccttcttgc tgcgagcgtt tagtgccagc gtttcaagtt a
//
LOCUS       KCLA01002368             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38559upu ultra-conserved element locus uce-7542,
            sequence.
ACCESSION   KCLA01002368
VERSION     KCLA01002368.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38559upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-7542"
BASE COUNT          216 a          115 c          129 g          242 t
ORIGIN      
        1 ttccttttca atcttccttt gaagaattca agtcactcta ttgccaatat atatgaaaaa
       61 ccagatatga tagttgctta tgctttcggt ctccccagca gcacgtttca attaaaagtg
      121 aaattattgc attctttagt ttgcataact tttgaataga atactacatt tatatgttaa
      181 ttttgctaag atcaacttta tttatctaca ggaagctatt ccaagattgt tgtacatttt
      241 cttcgcttct gaaatgttat cacatttaat tgcctgatct tatttgggtt gcaatcacag
      301 tcattaatta gcaggaaggt gagggacagc atcatatcta actatctgtt atggctgctt
      361 taatgagaaa aatccctgcc ataattttaa aggcatcctg tacacttcac aaatacagct
      421 tgctgtagca ttctcattta gactgtgaac atcaaaggaa attgatgtca ggtgtgaaca
      481 gaagctgttg aatatatctg ttaaggaagc tgagtggtat gcctggatgg gagagatgaa
      541 gggcagctta aaacattaac aaaactacag gtaattagtg taaactttca agggtaaggt
      601 atgcttgagg aataaaaatg ttgtttatag ctattccctg tagtgccact accgctaagg
      661 gtctgtcaat gttttcattt ataaagctct atttttatag ga
//
LOCUS       KCLA01002369             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38574upu ultra-conserved element locus uce-2404,
            sequence.
ACCESSION   KCLA01002369
VERSION     KCLA01002369.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38574upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-2404"
BASE COUNT           57 a          111 c          111 g          103 t
ORIGIN      
        1 accagtgccg ggcgctggga gcacaatggg gagcggcacc gctgctctcc ctgcccgatg
       61 gctttttcct ccagctgtgg gatttttcaa gccccttttt tccatgtctg tcccttcagt
      121 tgagcatccg ggtttattaa tgtccggagg cgtaaatcac agccccgtgt tttgtcatcg
      181 cagtcatttc agtggcgaaa ggattacttc aagtgactgc acccgcctgt tatctgtttg
      241 agtttttgca gccaggtcat ctcaggggac cgggaacaag ctcgctgccc ccttagctgt
      301 gtcgagcgcg cggcttcggc tggaccactt ctggtgattg atgcacgttg cgcggcgccg
      361 ctcttctcct ggcggcgcgg gg
//
LOCUS       KCLA01002370             883 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38589upu ultra-conserved element locus uce-1053,
            sequence.
ACCESSION   KCLA01002370
VERSION     KCLA01002370.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38589upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>883
                     /note="ultra-conserved element locus uce-1053"
BASE COUNT          279 a          175 c          145 g          284 t
ORIGIN      
        1 gcgatacaat cagattgtaa ctcacttcaa gaccaatgtt ctcttcaggt tcataggtta
       61 caaatgattt attgtcatca ctttgtactt agtgttctgg cttctcctgg taaacacttt
      121 acaaccaaag cattttcatg tttcagaaat acttatgcta aagtggctta acacaactca
      181 aattgcttta aatcaaagca aatttaaata aaatgtccct ctgctgcttt acagcaggta
      241 gaaaaatctg gtgcctgtat gcctgttctt tcacattaga gctgtaagtc tcctctttca
      301 ggtcacgtct tccacataaa agtgctaaac taatgccgct taatgacaaa ttaatgtcca
      361 tgaataaaaa atacacctct aatagcatag agtaatttgc cattacaata tcatcattgg
      421 acatgcccct ggtttaatac gatgtattta attcataact taatgagtga tatataaaaa
      481 gagagagatg aaccctgcaa ttacatttat gtgagtctgt caccttattt gtaaaacctt
      541 agagtcattt acattcaaat tagaacaaat gagtgatttc acaaagtgca gtgataaatg
      601 accattgctg cacaagacag aactgtattt cctgcaaaaa cattaacagt ttcctattat
      661 ttgttaaaaa ttacaatgca tattgcccag tgttgtgtga ataatgactt ttttactgat
      721 taggtcataa gactaatacg gagcaaaaat aaataatttt tcttttcatt ttttctgatt
      781 tcagctggga ggtctctgct gaggcagtgg caggctcaca gtgccacctg ctgcccatgc
      841 ctggctggaa gggctaccac tgccccattc agctcctgaa atc
//
LOCUS       KCLA01002371             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38603upu ultra-conserved element locus uce-422,
            sequence.
ACCESSION   KCLA01002371
VERSION     KCLA01002371.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38603upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-422"
BASE COUNT          281 a          227 c          213 g          251 t
ORIGIN      
        1 tttaaggtgc tcttttctac ctcctcggcg ccttggcaca aggtaaatcc ccctcggtaa
       61 agtcggtaaa ggcggggaga agtagtttag cagctgaagg taaggcggga gatatttgcg
      121 ggagaagagg aagctctggc atgcacccct gaacaaaagg gaacaagtgg tctttactcg
      181 gagagcagct tcccattaag actcactccg tcgtacatta tgcctttcat ccccactcaa
      241 ccacaaaatg attttgctgt agggaataca atggcagaaa aagatttaca ttgaaagaat
      301 ctttaataat aaactgttgc agatctgcct acttccccgt gatttataat acaataaaca
      361 tcggattcta ttaagtctca tgcactgaag acacgcactg aaaacccgaa tatgaaagcc
      421 ctcaattctt cccgtctcca gtaccataat agtgaaacga gcatggataa atgtgctaag
      481 agtatctctt tgcatctttt atagcttgtg tgtattaatc tgtaaagctt attaagaaag
      541 tcattgctat gcaaagcagc acccaatccc tttctctcgc ttttcaacag cgcgcagtgt
      601 cgagccaatg ggaccgctcg gcggcccctc attgcgcatt catggcatgc agcattcgca
      661 caatgtatct ctcaaaggct gctgaataga aagccttaat actcatgtaa acaaccgcaa
      721 accaattact taatgaatca ggcccacaca taatgaggtg ccagacaaag agctataaat
      781 gcatttttgc acccgagcct ctgctttaaa gtaaaatccc tcagctgtag ttggggttta
      841 accggcgcat cgtaatgatt gtctggggga catcagagaa gccatgtttt ccccctttgg
      901 gtccggcggg ggctttggcg gggtcactca tcagctcagt gacaaaacgc agtaaagaag
      961 aatttatctg gg
//
LOCUS       KCLA01002372             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38618upu ultra-conserved element locus uce-212,
            sequence.
ACCESSION   KCLA01002372
VERSION     KCLA01002372.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38618upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-212"
BASE COUNT          283 a          146 c          142 g          251 t
ORIGIN      
        1 aatcaactgc cacgaaggaa tctgttatgc ttatatgaat tacttcagtg gttgttttta
       61 ttgctgcact tactgcaccc cgcttctgta attgcttaaa agataatgtg caaaacccca
      121 aactttaaag tatttctaag atataaaata acggttctaa aacaaacgat ttgacagctg
      181 caaatgcagg ataacaccta gttacattat agaaacagtg tggataatta cttttttcaa
      241 aagggaaggc tctatggacc acagtcctgt ctgaatttcc ctgcagctca gataatgtgt
      301 ggtaatacaa atcctgttgt cacctcaacc taagtctttt tatcatctat acatcagtaa
      361 gaatgatgag agacgtccca tgattctcac agtcttcctt tgaaggatcc acatgttaat
      421 tactgcacta attatggttt ttgaataacc aaatgaagta agcagtctat gggaggtaca
      481 ggcatgaacc taagactgag aaaatactag ttactgaagt catcagtgta aactgacaca
      541 ttgaacgtgc ttaaaagaag tataagaagt agattttaaa agacaagcat cttcaataat
      601 tagggttcca tacaggaaaa agaaatgtta tttcttaatg gcaagtgcat ttaaactgtt
      661 atctaaggat ctgaaggtaa gcctgcttaa ttcactgctt cttcttttgt tattaggaaa
      721 acataattgt tccaaataat tagcactaga gtacatcaca agctgacaac aaaattatag
      781 aaatcttcat attcagatcc gtctagctgg ctattaggaa ca
//
LOCUS       KCLA01002373             397 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38634upu ultra-conserved element locus uce-2690,
            sequence.
ACCESSION   KCLA01002373
VERSION     KCLA01002373.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 397)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..397
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38634upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>397
                     /note="ultra-conserved element locus uce-2690"
BASE COUNT          134 a           71 c           80 g          112 t
ORIGIN      
        1 caactataat aaatatgagg agtgattccc agaccgaaga ctggcaaata gttacccagc
       61 tgctatagaa atagcaagat agattttttt tttaaagaaa agaaattaaa tgaaatggat
      121 attagctgga aacatctgtg ttcaccacag agcaaaatgc atattcagca gccagtttat
      181 tggctcttta gaggatgtga atggtgcatt gtaaataatg acacgcctgt aataaattcc
      241 cagtaaaaaa gagaggggga ctgagcctgt tcctcccaca attcacattt ctgggtccct
      301 gctgtgagtg atgattcaca gcagtcacaa attcctgttt tcaaaatgct attgtatact
      361 ccagggcttt cattaagttt tacactagca agggaaa
//
LOCUS       KCLA01002374             470 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38649upu ultra-conserved element locus uce-3273,
            sequence.
ACCESSION   KCLA01002374
VERSION     KCLA01002374.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 470)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..470
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>470
                     /note="ultra-conserved element locus uce-3273"
BASE COUNT          134 a           86 c           75 g          175 t
ORIGIN      
        1 tgtttttaat gaatgagaac agtctttcta aatgtccaat atacaaattt gaggtgtgtt
       61 tcagaactcc tcacacagct actcccaaat gattaagatt tatgaatttt tgttggtttt
      121 cttttcctct ccaatattaa tcttgaccaa aaaggtatta aaggaaccct tattctccat
      181 catttttagg tcaggaatac aacttcttga agatggaacc tggagaggtg aactcccttg
      241 gggaaccata tgactttgac agcattatgc actatgccag gaacaccttc tcaaggttgg
      301 agtctcaggt tatacctttt gacttttaat tctattcctt tatgtaaatg ctaagtttgc
      361 ttaaggattc taaaattgtt taaaacaatt ccttttaaac tcattttgtt tctgttcagt
      421 ttcatagcag ccttttgatc ttgcttcaat tctttagatc tgaagacaag
//
LOCUS       KCLA01002375             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38664upu ultra-conserved element locus uce-2407,
            sequence.
ACCESSION   KCLA01002375
VERSION     KCLA01002375.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-2407"
BASE COUNT          209 a          175 c          169 g          259 t
ORIGIN      
        1 tgaaaatttg gaacagccat aattccattt tagtgtgata tacttgagtc aatttatcaa
       61 agggtgttaa agggtgtcag ttctgaattt taccattatg tactcaatct tctgtaactc
      121 tgccttgctg tatcgcagca gcagtttatt ttacaccagc aaaacctcca ggtacaactc
      181 ttgtctcaga aatcaccgta tgttagaaaa caattcaata accacaggaa ttaagcactg
      241 gtggaagctg aatttcccaa acatgttttc ctgagagcca tataatctga aagccttcct
      301 aaacccttgc cccacatgtg ctggattcct catctccctg ggttttatgc ccatatcctt
      361 ctgaatggtg actgtaaaat caaattcaca agtttggggg cttggtaagt aactgctgcg
      421 tctacaacgg gcatcctttt acctcttgtc caattgcaat aagtaggtgg gatttggggt
      481 ggtggtttcc ttgcctttcc ccctgtttct ctctttctag atgattcctt gagtatgccc
      541 agtgtggtaa gtgagcaaga agcatacctt atgagtgcca ttgggaggag gcggttctcc
      601 agccatctct ccagcgtgtc tgcacctcag gctgaggtgg gcatgttacc cagccaaagg
      661 taacctggga aatgaagctt catttgcttt gttttcctcc aagtagcctt tgtcctttct
      721 agaacagtaa ttatctcatc acagagactg tgacaagttc agaagtgata tttaatgttg
      781 tttaaaaata ctggttgata gaattgactt tg
//
LOCUS       KCLA01002376            1031 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38680upu ultra-conserved element locus uce-881,
            sequence.
ACCESSION   KCLA01002376
VERSION     KCLA01002376.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1031
                     /note="ultra-conserved element locus uce-881"
BASE COUNT          280 a          212 c          256 g          283 t
ORIGIN      
        1 aggattgggt ggtccctcag cctccttaca ttttttctga agggttcaga agcctgaaca
       61 ctccatttct catctctgca gcccgtaaac ttttcagatt gagtgccaca gtcagcggga
      121 acacaactca tctcctgtgt gctaggagga aggccagcgt gagggtctga atttctgttg
      181 agcaagcgga atttaaatgg ccctgcctga gctgcagaca aaaatagata gaaagggatt
      241 cagcatgaga aagctggggt tttgctgctg cccctgtgct atttggggtt acctacagct
      301 acaggtccca tgacaccaga attatcgaat acagaatcat gtgaatattt ttgatgtcaa
      361 aaggagaaga catgaaaaac aagtgaggga cgcttctttg cctgcaaggg ttggggattc
      421 tcaatgtaca ttcagagcca cacacgcaag tgcaaataag tcaactacca cagctattta
      481 atcaggagca tttgttgatt tgagcagagc ccctatgctg tgaaatgaaa aaagaaaacc
      541 aaattttctt gagcaatctt gctgttcctg cttcaggtgc taggccattt cactaaagca
      601 gctcagacga gaatgtcatt agttcttaag ccccaggtga atttgccact gttccacatg
      661 attaagccag ataattgtgt gttgatagcg aatgtggttg gtgaaataca atttctagga
      721 ctttcctaaa caaacacaat gtagaagtga gtcaaagtgc tgtcatttcg gtcctttgtc
      781 acaggctctg ctcttgcaga catctctggt gaggactgga gaataattct gtggcgtgtc
      841 accatgctct taaaggtgac ccggctccga aagtggatcg tacatctttg ggcatgcagt
      901 taggggagga gggggggaaa ggcctgctta atatgcccac caacaatgga gacttctacc
      961 attagcctgt tttaaagtgt gcatgcttga gattgctttg tcttaggttg gactggatga
     1021 gctttaaggt c
//
LOCUS       KCLA01002377            1099 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38695upu ultra-conserved element locus uce-2422,
            sequence.
ACCESSION   KCLA01002377
VERSION     KCLA01002377.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1099)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1099
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38695upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1099
                     /note="ultra-conserved element locus uce-2422"
BASE COUNT          284 a          280 c          258 g          277 t
ORIGIN      
        1 gcacaacggc ttttgtgcac gaagcagaaa atgtgaggct ctgggctatg aaatcaaacc
       61 ttgtctttgg gcaggatcag gcccctgagc accctgctgt tctccagcct ggctggatga
      121 tgtttcctct tttgcctccg gggatccctg taactaaaag agtcattttg ttttgtagag
      181 tgggaaggga acaaaccctc agcaaacacg caaacacaac tggttgtctt tgatgatttg
      241 ttagcttgga cccgagccac gagacctggg gattgcagcc caagttccta cagctcgaaa
      301 gctgccatgc agagcagcag atcaaagtta ggatgagtga agcttgttat cagtcggaga
      361 ggtggccaga ggggtttcca ggtggaatct tcttaaaata tctccttctt atttccaatc
      421 tggcaatctt ggctgaacct gagtcaccta cttaataaaa attccatgtt cagtccatgg
      481 aatcgcttcc agcacaatta gatcaatttc ctctaagtag caataaatgt gttttccttt
      541 aaaaggccaa cacaagcaca ttatcgcagc ctgtaatccc cattctctct attagctcaa
      601 agtacatcct aaaggccaag ggtcgtggct aaagactaat cagtctcatt agcctgtcta
      661 atttatctta actaggggga cacaaacaca ctaaaactgt tagggagact ttttgatcag
      721 gatatgggag tcattcatca gggtcctgca gtttccagag acaggaagga gagaagaccc
      781 agggacaaag cagctctcca agggtgctct gcacccagtt gcactcactc aagcaggacc
      841 gggcagaagc cctcccagag gttcctactg tcctaccagg caacatccca gcaggctggg
      901 ggtaggtaag gaaaagcttc tccttgttct cacccacaca ctgcccggag catcttcctt
      961 gctcaggctc tgctttggca ctgcaggagc tccctgggct gggaaaggtt tgagtgccac
     1021 tggttaaaga ttaacccttc cccatttgca atggctctgt cagccacccc tgtgacttgg
     1081 gaacatgaat tgcccctcc
//
LOCUS       KCLA01002378             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38710upu ultra-conserved element locus uce-2668,
            sequence.
ACCESSION   KCLA01002378
VERSION     KCLA01002378.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-2668"
BASE COUNT          215 a          234 c          193 g          242 t
ORIGIN      
        1 ccctccaaca gaagggagaa gaaactttcc ctctgtccct gtgcttagac ggagcagcgt
       61 tcctgcaggt cctggctgtg gtgttgccga gaccctttaa cagccccaca tcctgccctc
      121 acatctttcc ccatcctggg gggcaaagct ggcttccccc atcacctcct ctcctttcgc
      181 tctggcaaag ccctcctcct gtgcacgcaa gcctcagcgc cgtctgcacc cacattagca
      241 tttctgctga ctacgaggat tggtttaatt tcatgggtgt catttccttc aagaaatctc
      301 tctctgagca gcagcccgac caacgcctga taaaacatat tttcctacgg taatgatttt
      361 atggagccat aagtcatgaa tttattatga tctcaacccc tgccgctgat tgctgtaaaa
      421 tgcaaagtaa ttaacagcga gcggtagcag cgattcccac ctggcagcct gagcgtggcg
      481 acgctgatgg ctttgattaa agcaatggct aaagcgtaca gcccggctgt aaaatattag
      541 cgtgctgaac gcaatatcct aaatcagaaa caaaactaac gagtagggtt gaaggaatta
      601 aataaataaa taaattcatc tccctccctc cagctattgt tctggctcat ttctgctttc
      661 ttttccctta aataatgtat gggctgagga cccgggggca ggctggagat gcagattgtg
      721 gtttcataac atcttaagtg ctcgtgttaa tttttcactc ctcctttctc tttcttctca
      781 acctgccatc tcccttcgga taagggaaga aagataatcg agtttcctgg agttggcctg
      841 gagtcagatg tgatttgact tggactgcag acagcccagg gaag
//
LOCUS       KCLA01002379             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38724upu ultra-conserved element locus uce-5227,
            sequence.
ACCESSION   KCLA01002379
VERSION     KCLA01002379.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38724upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-5227"
BASE COUNT          255 a          120 c          105 g          247 t
ORIGIN      
        1 aagcaatcaa gtgtatttag acagcctttt gtcatactat gtttgttgtg ttcaagcaaa
       61 attaatagat ttgagtgaag ctattcaggg cagaccttta aagttacttt atcactagaa
      121 taagaataaa tactttgcaa ttttaataaa gcgatttaaa atattttaat ctatgcttta
      181 ttgtattcct gagacataaa taaaacaaca actctgcaaa gctcacagta actacataaa
      241 gcattttaca tagaagacac actttttctt cttttctatg aatgtataaa gctctccttc
      301 aaggtcttac taaatctatt gatctgtgaa acgcagtgca ctccagggag gcaattcact
      361 tgatgttata tatcaaatga tgagatgaat aatgatcgta ccatttggta attaaagtct
      421 tataaacctt ttaactgact gaacgtcaga aaggtcaaat gagatcaaac ctactttgtg
      481 ttgttcttaa ttcttttctc atattcgtca taaaaggtag tatttgacag ttatatggaa
      541 gaaccacata cttaaacaac atacttttaa ttcctatatt actgtacagt ttaactacac
      601 aaacaaatgt tctttcctcc tacagtccta ttatgaattt tgccgttaag gttttagaaa
      661 agtagctact caccaatctg gtgaaataat tagcaaagtt attggattaa ggaaaatgaa
      721 caccaca
//
LOCUS       KCLA01002380             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38740upu ultra-conserved element locus uce-6588,
            sequence.
ACCESSION   KCLA01002380
VERSION     KCLA01002380.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-6588"
BASE COUNT          248 a           96 c          152 g          232 t
ORIGIN      
        1 ataacccaga tagaaggaac aatttacagt gcaagaagaa tgccaaatac cgtgtacata
       61 attcttgctg tgagatattg acattttttg aactgagaca tcaatttgtg aggtgtttgc
      121 atgtggccat tacagtcatt ggctaggaaa cattggacat tgacaagtaa ataattgcta
      181 ttaaaggatc tgtgtgtctg tgggctatga atgatgctgg ctttcaggag aaaggattat
      241 tgtatactga ctttttgtaa tcttgtacaa ttgtaatgca tcacaagtgg ggatgggaaa
      301 gaggaaaatt ctggtttatt tcctagactg ttataaaaaa aaaaattgtg ttaggaaggc
      361 ataaatgtaa caagtatcat gctgtatata gaggtatcaa tgtttgtctt gtataagaat
      421 tattaaatta caacagcaat ttcatttaaa cttctgggtt atgtttgagc ctgaaatttt
      481 aatgaagtgc aatactgagt gtgcctcata tcttgcagct gtaaacataa tggaatgtac
      541 atgtcaataa agccactgta cctttttata cagtgaaagt ctaaaggacg agtaagcctc
      601 tgcttttaca aactgttttt aaaatggggg gcaactttta aaaacaactt gctgaaataa
      661 ttcaaagaaa taggaaaggt tattggctaa actggtagtt acaaggtatg aaaatgctgc
      721 tcaaatct
//
LOCUS       KCLA01002381            1006 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38756upu ultra-conserved element locus uce-7216,
            sequence.
ACCESSION   KCLA01002381
VERSION     KCLA01002381.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1006
                     /note="ultra-conserved element locus uce-7216"
BASE COUNT          318 a          201 c          203 g          284 t
ORIGIN      
        1 ataaaaatgc taaggccttt taacctattt atttctgcat cctttgagct ttgggtttgg
       61 tagtatgtgt aaaaaataca acaacaagca tatgttcagt tgctcaatca accttttctc
      121 aatacacact cggtgatctc agtgagtcat tacagcataa ttacaatttg agtgtgatat
      181 gctgctcata gaaaagtagc tatttttagc tgaagaaaca ctatggtccc tgaaaggagg
      241 agaaagaaac aaaaatggaa ggaagaaaat ctgtaaccag caaatcaatg ctattgttaa
      301 ctgatattat gagacaccct gtagatttac aatgcctgcc ttcagccccg tacgaaccgt
      361 gccaaacaga atgcctagca ggggttaaat tcgtatgcct gcactgcagc ctatttctgt
      421 caacactcag ctcaggaaat aaacatttat gctttctgaa atgaaagtgt atttttgaag
      481 actagccgtc agatattttt tgcccttcac actttcaaat gcttagcctt ttttgtaagt
      541 tgactgcaaa gtgcatcagt ttgctaggca aaaagagaaa aaaaaccctt gacaagtgcc
      601 catggcatca ttgtcaagca cacaagcgtc tagtagaaga tggcaggagg gttggcacaa
      661 aacatgcttc cttcaagctt cttacctcag gggtacctga ctcttgagaa gcctttcaat
      721 ccttccaaat gacgttattg caaactgtca tctggtttat ttggagtgtg ctgtacggca
      781 gataaacatg ccatttaact gcaggtcaag gtacagagtc attctgctca caaatgccta
      841 agatacatta aatggcattg acttggggag ggagatggag cgacatcaaa gttgtcacca
      901 atatgctaca tgctaaaggg gaaaaaggta cacagcgttg tgttttagaa agccattatg
      961 cacttctgca tttaaaacat tgacctgcaa gacttttaag gaccca
//
LOCUS       KCLA01002382             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38772upu ultra-conserved element locus uce-6898,
            sequence.
ACCESSION   KCLA01002382
VERSION     KCLA01002382.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-6898"
BASE COUNT          203 a          131 c          107 g          218 t
ORIGIN      
        1 tcgatattaa agatttaatt catctctctg tttcctgttc caaacatcac ggaacaggtc
       61 ggttaacaga aattctggat caaaaccaaa aaccaggcag tttttaaatg ggctcttcct
      121 tcatcaggag atgtataaag cataagcatg acttacctct gcatacagct tctaattccg
      181 ctcacttccc ctgcatcatt ttgtacattc ctgtaccttc cagtattaca cactgtgagg
      241 atctagtaag cgagttaaag tcagatgact ctaacgaatc ccagcgcaaa tgactgaatc
      301 aataggaaac cagccactgc tgtttaagtg tatcgataaa tgtaccttta ttttctcttg
      361 aatggataag tgtcgcagtt aagagtccta tggatctctt aattgaaagt taattttaaa
      421 tcaataaaga gagtcattta aatattgatc agcgctttct acacgaattg ttagctgatt
      481 tttttttgaa acaactttgt ttaaatgcaa tcaatagccc acaatcagtg tgttccataa
      541 aaaattgaca gatgttccca aaatgcctgc taggcataat cttatctgtt tacatatgta
      601 gcatagatat ttcagtcctt ttcagatgta tctaagtatc tgtagaatcg tgctttcct
//
LOCUS       KCLA01002383             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38788upu ultra-conserved element locus uce-3235,
            sequence.
ACCESSION   KCLA01002383
VERSION     KCLA01002383.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-3235"
BASE COUNT          339 a          179 c          156 g          298 t
ORIGIN      
        1 agttcagcca aaatttaaac tggaaatgga cacagtgaac aacgaaaagt ctgaccacct
       61 tcaagctata gtcactgcag acatcaactt gttctgtata gggtttacat gcccagatta
      121 cttgatttcc aaagcccttg attttacttg atcttcaatt ttaactctaa taatttctac
      181 aaatatagat aagaatatca ggaaagatca gttgcgtatg cttcattaag tgaaccatga
      241 cttaaagcag aacctgatga aagctttaaa ctgcactgga ttacaacagt tgtaaacaat
      301 gctactgttt ttattatagc ttgatgcaga catgcttcag tattttacag actctcaatt
      361 ttaaaatgta aatggtacag gatattgata aaccaattag cactgatgca aagcaaattc
      421 ctcttttatc tcaattacaa catgacaact taataggtca agatagtcta acatctgaga
      481 caagggcaat tcaataaaac aactgcatct tgatatagta attaagagga aatgtgaatc
      541 cattacattg cctcgtgtat aggcacatat gtaggtgctc ttttttattt atttaagcat
      601 tcagtatcct cttgctgttt ttatagtatg ccaaatccac atgaacacac ggtctaaagc
      661 ccacttgcta agtatctact gcatctgtag tttagcaggc caatttaagg atgcaactgt
      721 gcagataaat aattcatgaa aagcccttaa aagacacagt tgcaagataa tatcttcaga
      781 cacaggactt ttctgtctac cacgttgcaa attatttaga tctggctaaa agaatttatg
      841 aaaggttctg atatttatct ggtgcttgcc cgtactctac tggcaaacaa aacaaaatcc
      901 caaaggctgt agcaaaataa atagattaca attagaaaag aaaaataatt ctgttcgaat
      961 atgctgccac tt
//
LOCUS       KCLA01002384             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38802upu ultra-conserved element locus uce-2260,
            sequence.
ACCESSION   KCLA01002384
VERSION     KCLA01002384.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-2260"
BASE COUNT          215 a          135 c          143 g          211 t
ORIGIN      
        1 gtacattgca gcctgttgca gcccacgagt tgcacccttt ggcatattct tgtgtaatga
       61 attgaattgt cccagctaca acttgggact ctaacagaag acaataaaag agagaaagaa
      121 tccatattaa tggaggaaaa aaggcagctt tggaaagtaa ttggtatgtt tgcctcagac
      181 ctgaactgct taccaagtat aagattcatg ctatcaattt tatttatatt ataaagtgta
      241 atgatatata ccttaaaact taggtaggtt tttggatatc gctggatgat ctgccctaag
      301 tttgtcgttc ttaatccatt aaaagacagg cctgcttgta aatccacagg tacagataag
      361 gagtcactgt ttgactgtgt ctgaaccctt ttcaaatgaa aaatgtcagt ggcagaaagg
      421 gaggctgaat tattttttta aagggttttc aaagattctc atgattcctc tggtatcagt
      481 taaatgtgac atgtccatag acatggctgg tttgtagtgt gtaaaagcaa gaaaatgcta
      541 cacttttcat ctctatgcag agaaaatgct gcagtgtgcc aaagcgatca gcatcttacc
      601 ttgccatacc agaaagactt ctcccttcca taattagcag attttcttaa gttcatacac
      661 gaacgtgtct gtgagagggg aaaacagcag cttccccccc cccc
//
LOCUS       KCLA01002385             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38817upu ultra-conserved element locus uce-7212,
            sequence.
ACCESSION   KCLA01002385
VERSION     KCLA01002385.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-7212"
BASE COUNT          161 a           62 c           78 g          158 t
ORIGIN      
        1 aagctttcat ggaatttatt catttcaaac tgtatgtacg ttttacaaac attgaaataa
       61 tgtctgcgtc gaatctcaag tgcatttgat gaaaaaatag gacaattttg atgtttcatg
      121 ctcgattatt aagcaaaaat attcagatat cagatagtta attaagtgga accgactgta
      181 ttcattaaaa tatttgttcc aaacaaatgt atttaacatt cagatattat gcagaatagg
      241 tgacaattgc atatctccat ggagatcaat aatgggattc agatcattgt gtaaagagtc
      301 tgcaagttta atgcggagag aatgtcatta ttatttctct cttaatgatg gtcattatgc
      361 gcaaacactg attgaattcc atttgttacc tgcatttgag ctgagaggaa taattacaat
      421 ttaagtgtct ccattaaaat tcataaaaga atatgaatg
//
LOCUS       KCLA01002386             360 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38833upu ultra-conserved element locus uce-7725,
            sequence.
ACCESSION   KCLA01002386
VERSION     KCLA01002386.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>360
                     /note="ultra-conserved element locus uce-7725"
BASE COUNT           78 a           78 c           84 g          120 t
ORIGIN      
        1 gatggggagg ggggggggag cgagggctcc actctatctt tctagtgtcc ttcatagatt
       61 gttttcttct cttaaaactg acatgtctaa ttggcaagcg gtgccatatc gtgtccagag
      121 gtctcctgtg gaacatttct acagctgtct ccttcaacta gacgcttatt catgtcgcct
      181 taatgagaaa caaaacgatc tctaatgagc aattacatag cgacagaatt gttcccataa
      241 caaattcttg cgtgtgacag aaacatcctt tgtaccagat attccgcaca ctgttaccga
      301 tttttttttc tcggtttggt gggttttttt ctggttgttg ttggggttgg gttgcccccc
//
LOCUS       KCLA01002387             857 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38847upu ultra-conserved element locus uce-5905,
            sequence.
ACCESSION   KCLA01002387
VERSION     KCLA01002387.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 857)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..857
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>857
                     /note="ultra-conserved element locus uce-5905"
BASE COUNT          254 a          188 c          187 g          228 t
ORIGIN      
        1 aataactcta ggataatgct gagcagtacc tataggccaa tgtagagcac cctcaccaga
       61 aggaagggag aggatggtag cactgtatga gcatggccat ggtctctgtg tggcagcagt
      121 cacctacccc tccactaacc tttctcacac cctcatccca agcgctgagt gacatctcac
      181 acagacagaa aggaaaagaa ttagctcatg gaaagcgaag aggtccagta tgtaaataaa
      241 agcgaatggc accctcatta tgtggctctt ttgaataaac gttggccttt aagtgccagc
      301 tgtcactcta tgcatggcct ccctccttac agctaacctc cccgtcacct cgccttgtct
      361 ccctaacttg tcctattatg cagtaccaag ctgagtcatt gtttcaagca ggaggtgaca
      421 tgttaatagc ttaataatag tataatctcg caaataataa tatgctgtca cactgtctga
      481 agcacaatgt ttacaggaga agtggtaatg tatgatgaca gtaatttgaa taaaaatgaa
      541 tttactgctc ttgtctcatt tgcagtaaat tttcgcatct ttcatgcaca actggtgctc
      601 catgacctct ttcattattg tgttctcagt ggctgctgct tgctttaaag aggaaggcag
      661 gcaaacgaaa cagaaacctg cagcttaata actgacttct agaaaaagag ttcacaccgg
      721 aaatctccct tgtttaggga gatgaggcgg cgtcagacgg gctgtttaat taatgcaagc
      781 tggaggtgcc gatggaaaag caggcgcgag ctgatatgat tacagattga caatttacaa
      841 agtgattgtc attaaaa
//
LOCUS       KCLA01002388             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38863upu ultra-conserved element locus uce-6184,
            sequence.
ACCESSION   KCLA01002388
VERSION     KCLA01002388.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-6184"
BASE COUNT          169 a          206 c          233 g          192 t
ORIGIN      
        1 cagagagcca ggagcctata aaggagttgg gctgaaatct gcatcccagc agaacaaacg
       61 gggcccgttc cttgccagct ggaagaggca gcctggcgtt gctgtcccca ggctgcaaac
      121 accacggccg cttcctttgt tcccacaact gcatcctcca atattccaca cctcaaaaat
      181 ccagtgctgt cccccgtcgc gtggttttcc actcgttcat gttgctcctc agtcacttag
      241 caatgagcag gccagatatg ctgacaccat attgttgtgc gtgtttgacc aggacgctga
      301 cagattaata ggaagggtaa atagctgcgc gctcggcggt ggctcggtgt gggccggcgg
      361 ggctgactgc tgccaggctc ggttgtgttt gcacagagga agccgcagca aaagcctgct
      421 gaggcagggt gacgtgggtc acgggtattt gtttctcatc tctatagaaa acaattgtgc
      481 tctcaatgga agacagcttc tggaagctgc gccgttccac tcgtggggaa gcgtttgtgc
      541 ttccagagcg ctgaataaaa cgcagctagg gagcagcaga tgcaccgagt gttggcggta
      601 ccccgtgtat caccatcaga ccttgggttc ttaggcattc ttctgctctg ctgctttgac
      661 tcgctctgtt tggaagtaaa agagcgttgc tcgcgtgttc gtttaggttt gccaggcctt
      721 ctcctctctg ctgagaggtt ctatgggatg gtaatagaag cagagcacga ggggctgcac
      781 gcagagccac agaggtgatg
//
LOCUS       KCLA01002389             343 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38878upu ultra-conserved element locus uce-6052,
            sequence.
ACCESSION   KCLA01002389
VERSION     KCLA01002389.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 343)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..343
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>343
                     /note="ultra-conserved element locus uce-6052"
BASE COUNT          120 a           41 c           76 g          106 t
ORIGIN      
        1 aaaaggaacc agtagagaat attgcaaatg acacccttaa aaatgagtta agagtatgat
       61 tgactttgaa atcactttag tcttctagtt tttaaagagg tttattctga ttaactgacc
      121 tgaatgttaa cagaactgga attttaattt gtattcagac tgtaagaaaa tcatccactc
      181 agatgagaca gggttgttta attaggtcta gtagttaact cagaagaaag taaatgtact
      241 gctagagatt tggaaggctg ctacaggctc ctgggatttg caggagtttg gagaagctta
      301 aaaataagaa gtcagtagtt ttaggaatta gaaatgagtg ctt
//
LOCUS       KCLA01002390             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38892upu ultra-conserved element locus uce-2319,
            sequence.
ACCESSION   KCLA01002390
VERSION     KCLA01002390.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38892upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-2319"
BASE COUNT          255 a          201 c          163 g          283 t
ORIGIN      
        1 aaatagttca tccaagggtt gacaaatagt ctttacacct tgtataactg agcacttctt
       61 actctgactc cctgcagttt gtgtacattc agcttttcac tttcaagtgt ctccttcacc
      121 agtctctata cagcttcttc catgccaccc ttaactttca agcgcagaga actgctgtgt
      181 gagggagcag cacatttgct tttgttgtgg atttccccct atagacttgt ccagcctagc
      241 agagggtaga acacaagact tttttctttt ttctttcttt ttcttttctc cccccctcgg
      301 atgctaagca tgatttacag gcctgagtta ttatttatca ttattcattt tctgtcagca
      361 gtgcattgaa ggttaataga aatgccagca tgctcactga tttacttagt aaaatatttg
      421 ttccaaggtt taggtcagat gattggtgtc tgattgaact tcaggtttat gcattatgaa
      481 aagcaagctg acttgacctt gtgccattag cactagcact atatattact ttagtggagt
      541 gaccttcaga gacccaatgc acactagatg cattcaacac gttttcttct cccatacagc
      601 tgaaattgta tacattccag ctgaatgtat gtaatgtaag atgatactca cttttcatgt
      661 aatgaatttg agtaggatga catgttcaac taaaaccacc cacctcagag gtaacaaaca
      721 tcctttgaat cccagatgga atgacgctca gcaagaattt caggctaatt agcacactgt
      781 catagagaac atccggttta ccaactcaca caggagagag agggcttaat tctgacgttc
      841 accacccaag tacaagtcag gaataactcc aataaggtcc accgaattta gcaggagaaa
      901 ta
//
LOCUS       KCLA01002391             613 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38908upu ultra-conserved element locus uce-4360,
            sequence.
ACCESSION   KCLA01002391
VERSION     KCLA01002391.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 613)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..613
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38908upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>613
                     /note="ultra-conserved element locus uce-4360"
BASE COUNT          142 a          152 c          165 g          154 t
ORIGIN      
        1 acccggccgc ggctcctgcg gcagggctgg ccctttgtgc agaacaatgg ccccgtgcgg
       61 gcggccgggc tgcggggggt taaagcggga acctcctgga gctggaaact atggattgag
      121 caaaatctgc ctgtcagctc tcggtgattt tgctgagagc acttggacat gctggcactg
      181 gatttacaaa ttgaaaatca ttaataattc taaccaggct gtgataaatc tgagatcggt
      241 ctcgatgaac ctggacaccg tcccataaat caaaaagatt acttggggat tttttaaaat
      301 ctgacgtcaa gatgtcacgg ttactaatgg tttttgtaga tctcgcgcgg cgatagatca
      361 tctatccacg ctacatctcc agcgtgacac cggggcagag atgtgatgtc tttaatatca
      421 tgaatacatt tcaccccata ataaagggat taacaactcc tcgctggcac cgctgcttgc
      481 ggctctggcc ctgatttagt gccattgtta ccagagtcgc tgtttccccc caaagccgtg
      541 cgggcaaact gttgctccct ccgtgtggtg aggagcagag gagagagagg tccctgttcc
      601 cagggtgtct gtc
//
LOCUS       KCLA01002392             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38923upu ultra-conserved element locus uce-4744,
            sequence.
ACCESSION   KCLA01002392
VERSION     KCLA01002392.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38923upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-4744"
BASE COUNT          165 a          112 c          103 g          150 t
ORIGIN      
        1 aatctctata gtcattctcc tcgataaaca aacaagtgaa aagatgcaat gaggtgtaag
       61 aatagatttg cacagggcag acaactgaac atttaattta tttacctctc ctaacagata
      121 cctggggtga catttattaa taaacggcat tatcaggtgt ctgatatgta gctcacagaa
      181 attaattacc cagcccatgg taaaaccata acaagcctgc agtgctgtaa catttgtgct
      241 aattgaaaat gagataagtg ctgtgggtgc aatttgcatt caatgcagtg tattaattat
      301 cttcagttct cctcatgata aatatacctg actgaaccac tctgctaatt tactgggtaa
      361 tagagtcata agtggattcc cttaggtgac caactacagg cattgggcaa tttgcaacat
      421 caaggcttcc ctcttctcca agcacttaaa tgagttagca aacaccgggc cgtttcttgt
      481 ggcctgcatt ggaagaacac agcggcaaac tcctttagtg accccatggc
//
LOCUS       KCLA01002393             339 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38939upu ultra-conserved element locus uce-4729,
            sequence.
ACCESSION   KCLA01002393
VERSION     KCLA01002393.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 339)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38939upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>339
                     /note="ultra-conserved element locus uce-4729"
BASE COUNT          127 a           58 c           60 g           94 t
ORIGIN      
        1 ttgccttctt agttactccc atccatcagg gtgatgtgtg cagattgtga ggatgccaaa
       61 cctttgctga aaactgatga gtaagcaaaa aaagagccgc tctttaaacc cttcacagtt
      121 tatagccaca tttacataac attaaataag tcaacaaagg catcattagc tcccattaaa
      181 atatgagcga agaaatttaa acgaacaaga caagctaatt ggtaagtaat gttgtgtatc
      241 aaaaattatt actataagac tccaaagtta atgagaagcc ctgcaattgt gtttactaaa
      301 tgtttaaaaa ttaaattaaa ggtgaacatg gagagccag
//
LOCUS       KCLA01002394             844 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38955upu ultra-conserved element locus uce-5972,
            sequence.
ACCESSION   KCLA01002394
VERSION     KCLA01002394.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 844)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..844
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38955upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>844
                     /note="ultra-conserved element locus uce-5972"
BASE COUNT          312 a          158 c          153 g          221 t
ORIGIN      
        1 tccaattcaa aacatgggtt ctaacactgg agaaaaactt acaaattctc ttcagatgtt
       61 tttgctgcct aatacttcac gtaaacagag aaatcccaaa ctatcataac aaattccccc
      121 ataatgaaag attataagcg tttgaaaacc acattacatg acactccgta aagctgtttt
      181 tcaattgtgc aattactatt cagcagttaa ataaaagtga aatattgact taaaacaatg
      241 ttaatggtca aagaatcatt aagaaatcct tcatcataac tttcacagca ggtggcctgt
      301 aaaatgatca agaataatgt gctggattct gtagccacca aggtcagttt ctgcatacaa
      361 atctttgcag ggggagcctt cagaaagtgg gccattcatc tgaaccaagt tcagagaatt
      421 ttcagcactg tgaaaagata tgttatgcaa gcacatagat gtattcagtg ggggtagact
      481 gaaccagcta catggagact acaaaggagc cctcccatgg ctcatgaata agtcgaggaa
      541 atgatcaggg agagatgttt agacagatgg cccacttaaa atgcctggga cagggcataa
      601 gcaattttaa tgaaacttta gatctaccat ataaattgtt tcttattttc tctgccctaa
      661 aaaaactcaa gaaaggcaaa tagaaattta acaactcaaa caagggccta tgctacgacg
      721 taaaaaaaaa gcaaaaaggg aagtaaatct cacactcgtg agtgttattg gtttaataag
      781 ttcatataca aagaaatatc cctcacagac ccttcaactg tcagatgaat ataaaagcag
      841 ggaa
//
LOCUS       KCLA01002395             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38970upu ultra-conserved element locus uce-2152,
            sequence.
ACCESSION   KCLA01002395
VERSION     KCLA01002395.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-2152"
BASE COUNT          154 a          128 c          154 g          188 t
ORIGIN      
        1 tcaaaccgtt ctcctcctga gcccggtcag gggccgtcag ctggattgtg ctgctgagga
       61 cctcgaaatg cagtgatttc actcgttact aacagtctca ggcatctccc agatttgtat
      121 gagcttggtt ttctcttcaa gctcaggttt gaggcatggt agttaacaga aggggaagac
      181 ttctggtgtt aggagagcga gaatctgcgc agtcaggcac tgtagcaaag ctgattttca
      241 taggtgtggg cagctgcaat tcctacaatt aataagtgca gtgaaggggt taaagagcta
      301 tcggttagtt tgagaaatgt tcttttttag ttttttcctg gcctagtcta gagcaaccac
      361 gtgatgtact gaatgcctgc cagcctcttt cttgttgatc ctccggagac catctgtgct
      421 gggggcattg attagagtgt gtctgctggg attacatctt ttctgttgcc atgccaacta
      481 atcagctgat tttggttacc acagaaacaa aatgtcagag ctcacagtac ggtaacacga
      541 attcagcaca acagaaaatg ttttcttaat tggagaccct tctgattttt tgggttctct
      601 gtacaaggca gctttaaaaa agaa
//
LOCUS       KCLA01002396             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 38986upu ultra-conserved element locus uce-1236,
            sequence.
ACCESSION   KCLA01002396
VERSION     KCLA01002396.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="38986upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-1236"
BASE COUNT          210 a          110 c          129 g          216 t
ORIGIN      
        1 gtcccccccc cgatagtaac ggaaggtgga tcgaaagatc ccagattgag aaacagtcat
       61 atttctggaa ctaactggtt tttaaaagaa aaggttagga cgactggaga atgctaagta
      121 acagcgcggg agagagatgg ttgagctctg aaattgctta cagaattaca tttgtttttc
      181 ttgtgatttt attaaaagtc actcctcatc tccagaatgc gtgaaaatat ctactttcca
      241 ctcagataca ccacattaac ttgttggagg cgaatttgtt tgtttgtcta ttttatttat
      301 ttgccagata agattgatgc agtcttatta gcgctatatc tagttatagg aagagataag
      361 gatgagatgt tttcttttta ttccaattac tagacttgtc actttactga ataactgata
      421 catgattatt tatcttgagt aaatagaaat cagaaaagca gccaatttaa cacatacaaa
      481 caaaatatgt atgttcctta ttgctatata ccacctatgt aattgaaggg attaaaacta
      541 cggccttaaa agggagaaag ttaaatactc catctacgtc agtctctgat gtatattctt
      601 tcatttctgt gcctggcggc ttatttatcc agctggatgg ggagaatcag atttaaaaat
      661 acggg
//
LOCUS       KCLA01002397             858 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39002upu ultra-conserved element locus uce-2740,
            sequence.
ACCESSION   KCLA01002397
VERSION     KCLA01002397.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39002upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>858
                     /note="ultra-conserved element locus uce-2740"
BASE COUNT          208 a          235 c          219 g          196 t
ORIGIN      
        1 aaggaaacaa agggagcttt aaaagagggg ggtttatttt taattgcctt ttaagcgcag
       61 ccgcctccat aaaggacagg gctcggggct ggctttctgc cgcggcgctg tgcccgtaaa
      121 cgactccctt aatgtcgctt ttgatagaga ggccaaatta gctctaataa aaagcgataa
      181 taaaggcagc tctcggccca aactcgactc ctcctcgctg tcaaggctga gccattatca
      241 agaggaagca gcactctcat ttcaattaac cttgtttgca ccccactacg tccacaccaa
      301 taacaataac attaattcag ggcgctggcg cggcgcggcc gcgtttctga ctccgcacgc
      361 gcttcggagg cagcgcctaa tgaagccgaa acctcacgtg aggctccaaa ttgctcacaa
      421 cagagttttg aagctctatt agggagaaaa atgctgattc tcttcgagtt cctcaagggg
      481 aaaagctgtt gtagcagcag cgggcggctg cccggatcct agccccttgc taaccttcgt
      541 tcaatcatgg ggatgagccg ccggctctgc cctgtcgcgg acaatgaata ttcctcagcc
      601 aagggttcta ccctgcgaga gaaatcgccc agctgacagc tttcgctctc ctccaggctc
      661 cctctcctct tgccagaggg acagtttggt tcttgaaggc atctgcaaag cttcatgccc
      721 atctggagca gccctccagg gagtgcttag gatggggaaa aagctgaatc caggtagttt
      781 tcctacagaa aacagagggg tcgtccccat tttgcagtgg ggaaactgag gcacggactg
      841 ccccgagttc tgacttca
//
LOCUS       KCLA01002398             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39016upu ultra-conserved element locus uce-4866,
            sequence.
ACCESSION   KCLA01002398
VERSION     KCLA01002398.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39016upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-4866"
BASE COUNT          204 a          143 c          143 g          171 t
ORIGIN      
        1 tttttttttt tttaacatgc aagttgccat gaaaaatttg ttaatgaaat atttgcttag
       61 aagtctgctc tgggctaggc tgataaccta tctgtgtttg agtttggctt cccatattct
      121 aaatactcat cttctctgtg tttagcttat tgattggttt ggcaggaaaa gcagccttgt
      181 catcagtgac caaggtcaaa ccaaacaaaa agggacagga gagataaaaa aacaaagaaa
      241 gaagaagttg gatggatgag ctcagcgaga cagcagtaga atatctgacc tcctgcaact
      301 ttccttcagg agatggctcc ttgtctgccc aggggcctgc tggctttcac aaggtcacaa
      361 gaaatctctg gcatcatcac agccagcttt catatagcgc aggacagcct ggaactggga
      421 gtcagacaca actagcagga ggaaaatgtg gacatgatca caccaaggct gggtctaaat
      481 gctcagtgga atatatcctg agaacactca gcacaccaag tcaaatatct caagcatcca
      541 gcctatacct acataaggaa acaagatcac ctgttctcag aggtgcctga agctctttca
      601 gagcacagca gtttcacaaa aataacagga ttctcaccct tggtatgggc ttacagatct
      661 a
//
LOCUS       KCLA01002399             985 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39032upu ultra-conserved element locus uce-5615,
            sequence.
ACCESSION   KCLA01002399
VERSION     KCLA01002399.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 985)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..985
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39032upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>985
                     /note="ultra-conserved element locus uce-5615"
BASE COUNT          310 a          179 c          215 g          281 t
ORIGIN      
        1 ccgcaggcaa acaacatatc actttcctta aaatgccatt gggaaacaga gataaatggt
       61 gaagcatttt ctgtgttgac atgatgttcg cctgtccgat cgcatccttc ccaacagaca
      121 gcagagaagc aattacaaaa aaagacatct gtgccaaggt ttggctagcc agggagggca
      181 agctcttgtg tttaagaggt agagaatcca atcgatgaaa atgtctgggc ctgttagcac
      241 caataaagct gaaggccact gggaagctca gagagggtct tttgttgcgg agatagaaaa
      301 gaggccgaag ctgtgacact tggggagaaa tagggtcagc tagtaagatc atccatcttc
      361 ctcaatggca gctttctgtc agtttttaac cctgctcagc agaggatcta aacctctatt
      421 gttggcacca gccaattctc agccaagtgt aaatgaagtt aatattcact gaccttatgc
      481 atagccaatg aaggcccttg atgtcatcct ggaaataatg ttatctgaca cttcaaaaag
      541 cagatgttgg caggttggtt gtggtttttt gctgagccag tacgcaaaga cacattgttt
      601 agccacctcg catttaacct gatttccata ataaccacaa ataggccttt ttgacccgaa
      661 attgacatag ttatggtttt agtttgcata tctttatatg cttctcacaa agcctggcta
      721 acctgtgcta aaagatctgg gagagagagt ttggttcact cagataagaa atatatgggt
      781 cattgagcaa atttcactta tgctgataaa acagtgagta attaaaatag tttaaatagt
      841 tcaaagtgga catctttaga acatgatgaa gaatagtgtt tattttacaa cataacttta
      901 ggaaaggaaa tatatcacag aagtgaaaga ttttatgggt atagtgttta ctctgaaagg
      961 cctcttacat ataatagtta aggtt
//
LOCUS       KCLA01002400             588 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39046upu ultra-conserved element locus uce-546,
            sequence.
ACCESSION   KCLA01002400
VERSION     KCLA01002400.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 588)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..588
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39046upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>588
                     /note="ultra-conserved element locus uce-546"
BASE COUNT          195 a           99 c          106 g          188 t
ORIGIN      
        1 aatctggcaa atattactcg gcatgtttgt caatgtgctg tataattatt aatttgttca
       61 ttgaggcaac tatataaata aatagaaagc agaatgccat gattaaacta acactagaaa
      121 cgcagggtca aggagccctg ctatacaggg atctaaatag ctttcctagg tcctattttt
      181 acatctccat aaagatctgc aggtctgtaa ctgcgaatta attggcacac atttagatgc
      241 caacagagct tttgtattct cagtgcacat tttgtcttct cagagtgaga tgttagtaat
      301 ggaggtttta atattacccc taggggagca ccagaaaatc ttaacaattt ccttcactag
      361 agtattttca ttagagctaa atgctgtgca atttacattt gaaatcaggt gtagggtaag
      421 tataatgcga caagacatgt tgcaatgtta ggtttttttg ttctaacgtt ccctatgtac
      481 tgcaatatac cttcaaaaga taagcatgca attaaaataa acatcttgat ttttaactgc
      541 tcctaattgg ggataatagt agtgcaaaac acaatcacga ttaaaaaa
//
LOCUS       KCLA01002401             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39075upu ultra-conserved element locus uce-675,
            sequence.
ACCESSION   KCLA01002401
VERSION     KCLA01002401.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39075upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-675"
BASE COUNT           86 a           47 c           64 g          102 t
ORIGIN      
        1 tgcttctgta tatgatatag gttcagtgct gtagcgcttt gacagcccat tacagaatgt
       61 aatgaacagc tatttttaaa cagaagaaat gcaagttgac agcttggcaa ggaaattcag
      121 ccagtggtgt aatttttgtc atcttaggta gagagagcgg atttcagttt aggttaaaga
      181 aatttatatc atggacttca tggagcaagc tttttttgct tcaatttact gaatacttat
      241 tgaagtgctt gaattaaagc tgcgttttgt caaatcctga aacctgcact cctgtcttg
//
LOCUS       KCLA01002402             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39090upu ultra-conserved element locus uce-7787,
            sequence.
ACCESSION   KCLA01002402
VERSION     KCLA01002402.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39090upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-7787"
BASE COUNT          283 a          170 c          153 g          239 t
ORIGIN      
        1 aattaaacag aggtcatgag tatttattta tgggaatgcc cacagtgcat tggcactttc
       61 caaggggaga aggaagcacc atgccctctc tgaaaaaatc ataggctaaa gtgcaggatg
      121 tgacactaac cacaacacag aaattattct aatttgagcc agcatgcctt gtttacccct
      181 cactatttgt tgacctcact gttaatatga cagtttcttt gttgttgtta atagaaagca
      241 aaaaacgaag ccttgaaaac cccattgcac tgcaccattg ggaaccaggc ttattgagag
      301 gagctataaa gccttgaaca agccctttat ttagtgtttt aagaagtgtc ataaggagtt
      361 aataggacac agctgtacca gctctttcta ataagcagct tctgtcgctt tggtcaccac
      421 aggtgtctgt aacctgcaaa ctcttattcc tagtgtatca aagttgtgct acttaataga
      481 tttctttagt aaaacacaac aaagcaatta catggctgtt gatcgtcagt cataaaaaag
      541 cccctcaaac acagtttttc aaaagcaact acactgcaat tttttgtcat tgtaaaataa
      601 aagacactag agaattaaat agagaagcga acaatagaac agcaggtagt caaatgaact
      661 tagccactac agatggttaa gaaatagtgt ttccttctac accaacttgt gggataaaag
      721 aaaaggagga ggctccttac tgcccatgaa tggtaatgcc aaaagattta agcaactttc
      781 cagcctacat attcagtccc atgaaagaac ctagatgttt ctttttcctc tttttccatt
      841 aaaaa
//
LOCUS       KCLA01002403             921 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39106upu ultra-conserved element locus uce-438,
            sequence.
ACCESSION   KCLA01002403
VERSION     KCLA01002403.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 921)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..921
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39106upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>921
                     /note="ultra-conserved element locus uce-438"
BASE COUNT          265 a          177 c          186 g          293 t
ORIGIN      
        1 ccaacataat ttacacttac aagtcaggcc aacttctgac ctgatgctaa agtatatcat
       61 tccattgaag ttagtgatgc tggaagtact tgctctcggg ctgaagttgg ttcacttcgg
      121 tgttgaggca tcttttcctc ttccctgaga aattaatttt ttcccttgta cagtttatgt
      181 tggagaacag gatgagtaca gggcaaatgc aggcagtagc aaatgtgttc acatttcact
      241 acaaggaaca taccaactgc ttgtgcctga cactttacac aatatgctct ctggccttaa
      301 gaaaacatta ttttatgttc ttactctaat cagccttgtc tgccagctca gagaacagag
      361 aggtacattg ttgtatgcag ctgtcatttg ttccatctcc ttgctctttc tgacttcaat
      421 atctttgtgg tatttagtga aagtaatttt cagttagaaa tcttctgccc tttcagtaag
      481 tgcaagtata gcacttcatc aatggccaaa gaattctaag ctatctggga tgtatcagga
      541 cagttgataa aacctcacag agcaacctat gatagtacat cccatcataa ataaaaaaaa
      601 agcagaaagg gcctttgtca gtgtttatct gtagcgcttt tattctttgc ccttgatttc
      661 ctcttcagaa aattgatgca cccttaaatt gaagcaggag gcttgacagg tgatggttag
      721 tgtgataact gctcagattt catcagccag tgtttttctg gtggtgcaat tgtaagaact
      781 ttcagctaga ttacctgtca tccactacat cagataaaag agggagagtt gaaagatgca
      841 gttttgccac tgtaccttat agaggatgaa aagtgtgggt gaggtaacag cagctgaaaa
      901 gaagtacaat tattttctaa t
//
LOCUS       KCLA01002404             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39122upu ultra-conserved element locus uce-6758,
            sequence.
ACCESSION   KCLA01002404
VERSION     KCLA01002404.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-6758"
BASE COUNT          251 a          196 c          175 g          270 t
ORIGIN      
        1 acagccttaa ccgaagcagg gtgaatggca tagcatggct ctctgtacca aagcagcgca
       61 gcctcaattg gcaccaatct ttgtacatac agccatgaca aaaggggatc cgggagcctg
      121 aatattcttc caaagcactt aaaaggccag cgtgaatgtg agggtctcgc atgttttttg
      181 tttgtgtgca gctagcagag tgtgctgtgc tattcattct aggttaagct ttcagtgctg
      241 tctaataagg ggcccttgta caaaaacgtg atctgtgctt ttccagatat ttgtatgtca
      301 ggcagctaca cagcagcaac ttctgtaatc ccttctcctg cagttagagc tactagaaag
      361 gcttaataat atcccaaagg caaagatgaa acggtatctc cacagctact gtttgctgta
      421 gagagctttt gaagtcgagc ttaagatgtc tttatttccc taccagagag attttttttt
      481 gcccttcttt ctccagtgtt gtcatgatga tggctttttg cttgaaaaat attccaagag
      541 gctgcagtct tcccataaag cattaaggaa taagaacagc tcttcatcag gggctcctgg
      601 aatctgtaag tacagtttgt cactacagaa acccacagct accctaccag caatctcaat
      661 ttaatacccc acatttcttc cttatcagat ttatagcaac ctcagccttc tatggcagtt
      721 tattcctagt tcttggcttt taacttctaa ttctaattaa atctcaactg agttcatcac
      781 tgagctgcca tttatagatc gcttttcttg ggtgtaagaa agttaaatat gataaagctg
      841 ctaaaaacct catcaaatta tgacccagcc tgataaatga aaggagatag ca
//
LOCUS       KCLA01002405             973 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39138upu ultra-conserved element locus uce-1497,
            sequence.
ACCESSION   KCLA01002405
VERSION     KCLA01002405.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>973
                     /note="ultra-conserved element locus uce-1497"
BASE COUNT          310 a          165 c          188 g          310 t
ORIGIN      
        1 aagtagtggc tttattgaaa gagagccttg tggtattttg cttttgaaat gtgtttaaca
       61 cagagtttaa ggattggcaa tttgtttaaa gaaatgggta aaatatttaa aactgctact
      121 ttatttaaac tattgtgctt ccttcagtaa acattcagta catgactgaa ccctgtatga
      181 acttgtgctt gttgttggtt aaatagattc tgagcttaaa tgaaaagacc tgctattgag
      241 aataggacaa aaaagttgca tgtgcttttt ttttttattt gcccacacac aagctcttac
      301 ctcccaaaat actatgttca caggaccttt tattaaaaca cctttttttt tcctaggcct
      361 caaagtacta aactgaaagc aagctgttaa cagaaatgag taattattga agctctaaca
      421 ggcagctttc attgaagttg attacagcag ccatataatc acttttacgg atgctgtaat
      481 cacagtagca gggaatgctt gacttggttc ttattgtttt cactcagggt ggaggtaggg
      541 ggcctgcaag aaacccattt taccacctcg gtacaatttc tgctgtaaag aaaatctaca
      601 gagcactgaa tgcagcagag aatcatttat tctttcttta ttagcatttt ctcctccctc
      661 acatgagagt ctgttggagt caggaaattg ttgttattca atatgcaagc cagaggttct
      721 aatgaccatt tgggagagta tgaccaacaa ttacagctcc taatgaatag gagtaatcta
      781 gttgagccta aacactagta gcaactctgg tgctgtctct ggttaaatta aaagaacagc
      841 aatgcaaagg aagttaacaa gaattaatta gttagatcga actgaaaacc tactcattag
      901 tgatgttata ggcagagtaa aagcctatct tcagtgcaat taggtagaca aatgaattgt
      961 acaactgact gat
//
LOCUS       KCLA01002406             991 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39153upu ultra-conserved element locus uce-4716,
            sequence.
ACCESSION   KCLA01002406
VERSION     KCLA01002406.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39153upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>991
                     /note="ultra-conserved element locus uce-4716"
BASE COUNT          328 a          158 c          197 g          308 t
ORIGIN      
        1 atggtaatag attagcaaag cagctgagac tttttactta ctagagagcg atcctctgaa
       61 gacacagacc ctctctccca ctatctcatc cataggatag actttgtgag tgctttaggg
      121 tcttgtgggc aacatttgcc cccagagttg aaaagaaaac tgttaaatat atagcactta
      181 caacgtcctg aatacatcta agactttact cttgtcatta gctctgcttg gtctggcttt
      241 tagaaagtca cagtcttgat tgcaccgcaa agtaagtttt tcttagaaag ttcaacattt
      301 ccttacttac taggccatat gatattttaa ctggaaataa aacaccaacg tcagcaaaat
      361 agcctaacgt cttttctatg gtagaatcta aaggctgaag ctatacactg ttccaaagat
      421 ttatactatg gactttccta tgctttctcg tacgattaaa tgcagcatgt gaaaaaggat
      481 attgagacct ggatggatgc atcaagaagt atcaatgatt gttacctgca gaggtgttac
      541 aagaaatttc atctgctgca acgaagacga attgatttct gcaagagaag ataaaattca
      601 caatactgct tgctgactgg gaaatgtgct agctgccaat tgacttgatg tttacagatg
      661 gggtagggta agggtgctta attttaatga atgtagcaag aaaaagtgtt gacgtatttc
      721 agtactatag agtttataag gatcatgagg tagacatgct gggatctttt aaatgaaata
      781 atggtgacat ttggatatgg actatgtaca aactcttgca ttggaagctt catgtttagt
      841 gttacagata tgtcaatata ttcatgaagt ctaataaaaa gaaaacagta tttatattga
      901 tatagatatt aaagggcact gctgcaaaat atgtaaaaag cattttttga aaaaaagaaa
      961 aattgccatt tattttgtgc atctgaaagg a
//
LOCUS       KCLA01002407            1059 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39167upu ultra-conserved element locus uce-502,
            sequence.
ACCESSION   KCLA01002407
VERSION     KCLA01002407.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1059)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1059
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39167upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1059
                     /note="ultra-conserved element locus uce-502"
BASE COUNT          356 a          202 c          197 g          304 t
ORIGIN      
        1 ctgtattctg caacatcact acaatgactt gaaaaagcac gtgtcaaatg tatcccaaga
       61 agaacagttt cagcagtgaa ataccatggc aaggttaaaa ggtttacacc taatcactgc
      121 aaaagatatt tattttacaa aggagaacat attcagagta cagatactcc atcttttagc
      181 ttcaaataat tgttatagag ccacagacct taattaattc aggaacttga gaggagtcca
      241 gcagtctgca aatgccgctg tggagggctg cagggataac tatattctgt accaagaggt
      301 gggggcataa attatgagag ttttgaaaca cagtcaaaca gaaatttgtc taacagaaat
      361 gatctcagat gtaattcatc tccagctctt gcatgtcatt gagaagtggt ctggttgtac
      421 ttaaaagcag caatttcaaa tctaatagat acatgtcagg caggacaggc attatgtagc
      481 aaaaaatgaa atggtaccat cttcttcagc tgatggaagt attgtctcaa acgttcctcc
      541 ttggcctgta cctctgagtc actcatgctg tcaatcaagt gataaagaaa atagccaaca
      601 gcttctgtgg aaaaaaacaa gagaaagcat tccactaaaa ttaccgagac tgtcatgtta
      661 tcaagattaa tttataagaa atcattttgg tgtgagatgt caccctgatg agaggctctg
      721 aaatggcaac aatgatcact gaggcataga gattatgtgg tttgggagca catatctaac
      781 tggtgagtga aaggaatatt aattattttc agacctagtg acagcttttc agtacagaat
      841 cttacttcaa tctatttttt ccactactgt gtgacagaag tggtactgcc caaggccttc
      901 cccccctttc ctgcccacta ccccaaatag ttgacacaaa tattttgtca ttgatcaaaa
      961 gaaaaaacag atttgtaaca ctttgcatat tcattccata cactttactc attgtatctt
     1021 attgccaagc tacgttaaac agtgcaatat taatataaa
//
LOCUS       KCLA01002408             865 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39183upu ultra-conserved element locus uce-254,
            sequence.
ACCESSION   KCLA01002408
VERSION     KCLA01002408.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39183upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>865
                     /note="ultra-conserved element locus uce-254"
BASE COUNT          254 a          150 c          172 g          289 t
ORIGIN      
        1 agaggggttg aacctggaaa aagctcagtt gattgcctca tataatgggg agaggggaga
       61 gggaggaatt tagagtagct ttaagtcatt aagccgggaa ggctctctga tttcttctct
      121 ataacgacat aaagtgcttt attcaggtaa agaaaggctt tacttactgt aaatctcaca
      181 aagtttatgc caccccagat acaaacttca cactaacttg ttcactttgg ggaaggtttg
      241 cggtttggtt ttgttttctt cagggttttt ttttgagcaa taatagtctt tgtaagatgg
      301 ctgcagtgtc agcatttatc ttgaaactct tggatattag ttttgactgc agtcaccttt
      361 ctgacaagtg ttattgcgac tatgttttat atccctgttc aggatgattt ctaatgataa
      421 tgctctgtct acctcactgc ttcacactaa attatagatg ccactatgac agggcaaact
      481 atatccaagt gctaaactct actccctttg tgtgatgtca gtgccttcac tactctgtgc
      541 ctggaattcc aaacaggaca ggaagatatg caaaacattt ctgcgtaaaa ataatgttct
      601 gtcagttatt aaacaagtga tatttcattt aatcagctca aggggattat tttaaatgaa
      661 aaggcagaga gtatgatttt attaacacat tcctgcccta gagtcctact gtaataattc
      721 ttacttgact aaattaaaaa gttgtaattc agtccatcca caacaaagac ttatggatag
      781 ttaaatttca ttagtttttc tgttttgagt ggtgtgtgga atacaaggac agcatcgtgt
      841 ctctaggaaa tacatcctga agtaa
//
LOCUS       KCLA01002409             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39199upu ultra-conserved element locus uce-4585,
            sequence.
ACCESSION   KCLA01002409
VERSION     KCLA01002409.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-4585"
BASE COUNT          302 a          199 c          163 g          292 t
ORIGIN      
        1 attatgcatg gaagtgtata ataatccagc ccagtcgtga ctctaccact gacttcccac
       61 atgaatatgc acgaatcaat taaacctctg aatgcatcaa tttcctcctc gagtagtaat
      121 gataataata ataatcactg cccattgtat agggcaccgt atgtaatatt tttaatgcct
      181 gctaatgaaa tgtgctatta attactagaa tgtggtttgt ttttgaaagc caagcaccag
      241 cgcggctcaa ctttgtattc aaagggatac gatttgtgcg ttcccaaatg ctgacaacta
      301 ctacagcaaa tccccctgaa aaatcaaccg gcattcaatc agcctgagaa cttttcgatg
      361 tcaccagcac tgcagagaaa tttgcagcta aggggttaat cagattagat gggagtggtt
      421 gtaggcttgg tgccacaggt tttgcccttt gtggcttctc acatcccaga cttggaaaat
      481 atgagctgtg atactgagaa aggtaagaag ccagcacagc cccatagtga taaatgagtt
      541 tgcatcatct gtcattagaa cttcctgcca acagggtcat tccctattaa attaccactt
      601 gtcaatgttt aaaatactga ttgataaatg actgtgccaa aactgataac acgacagctt
      661 ttattttcta atattctcgg ttaccacatt ctgctacttc aagatacaga tatagttcaa
      721 gtactttagt gaaagacaat ttaatctaat acaaaactaa caggtaccat agaatgattg
      781 gtcctgatat acattacata ctattcttct tgccaaaata aacctactgg cgatttagcg
      841 atacgggtag atccaagttt cacatttcat caaatgctag taatctgttt tatcaatata
      901 aactgcattt taatgaaaaa attcttttct tcagtacact tcacttctaa tgcccc
//
LOCUS       KCLA01002410             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39214upu ultra-conserved element locus uce-4342,
            sequence.
ACCESSION   KCLA01002410
VERSION     KCLA01002410.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-4342"
BASE COUNT          213 a          140 c          104 g          185 t
ORIGIN      
        1 atcaataaat accaaatgac aaactgtgac aaaaacagag aaaggtcatt acagttgtga
       61 cacagaccct gagatcaccg ccccagccat caaaatgtta aaacaagcta cttggtatta
      121 acaaccttta tggaataata agaaccatta aagtcagatt agtctacaaa caaggaagcc
      181 caaactttca agattgttgc cttactgccc tcgagagttc acctctatct cccatgaaaa
      241 atgccagtat aaaaattcta aaatacctcc ataagcccaa aggaaagcct gtggacagac
      301 agatgatgtg atatatttct tcctttccat tcttgggcag cttcttctct cagcggctga
      361 aagcaaatgc tttgagactc agtcgcatat ttaattagaa gcaagctgct tgcactatca
      421 ccgtgcgaat ctacctctcc aatctctcgt gagtcaatct ttcccatctc tgattttctt
      481 ttatatttat gctagaatat ttaattgtag acaaaaggtt actctggctg tattcactgc
      541 acagaggcag aataatctgc tttaaaaggc ttgacatttc aggcttttca aaaaggctga
      601 aaaaattata tccctgcttt tgttaatcaa tgaagtagaa ct
//
LOCUS       KCLA01002411            1201 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39228upu ultra-conserved element locus uce-277,
            sequence.
ACCESSION   KCLA01002411
VERSION     KCLA01002411.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1201)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1201)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1201
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39228upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1201
                     /note="ultra-conserved element locus uce-277"
BASE COUNT          357 a          237 c          256 g          351 t
ORIGIN      
        1 caggaaaatg gagtaaaagc cattgggctg cttttgccct tgtttcatcc cagagaactt
       61 acagttttgc tctttaaaga ttcaggagga ggaagcagtg gggggagatg caagggagag
      121 cacaaaggca aagaaggatg cagtgccata acaagtcctc cttggcctct ctaagacaac
      181 cttgttagaa aacccaaaaa aaccatgcac tcaaatagtt gatattaaaa agaccaagaa
      241 aaaaaagcag agtataatta ccttctgtct gaacttcggg aaagttgagt tctgcgattc
      301 ttttctcttt gattaaaatg aatgtttgtg atcagcatta ctatttacta ccccatgatc
      361 aaaaacaaat aacccacttt gtttgtttct tacggcaaat gaattaaatt agacgccatt
      421 aggagtactg gctgtttata tccttgtttc agcagtggta gtatttgaag tttcctgcgg
      481 taagttcatt actcgtattt tgtccagaat tagtgaagcg tgctgaaaat tgctaatgac
      541 agatgtttct ccactctgtc acacttcttg tatcatttga tttggaaagc aacatacggt
      601 gttctgctct atcagtatgt cacagactgt ctgtaaacag ctggtcataa ctcagttcag
      661 tgaaaaccat tactttccaa tgaagtgctg gacaccctcc aaattgcatt ttggcatggc
      721 ctgagctgca taatgcacaa agttcttctg ttctgaggtt acctaaggaa ggatttcctc
      781 cccctttcca cttgtttatt gtggctgggg aaagaaaatc ttgttgtaaa tggttagata
      841 aggactgaac aacagaggaa gaaaaaaagc tttctcttgt ctcgggaacc ttaaaggctg
      901 tcgctggtgc tgtgctcaaa ggaaaaaagg aagtattgca tccctacctc accacttctg
      961 tttgtgcctc aggttgaaca gggtgtatta tcggggtcag ggcacacaag atgatgacag
     1021 attgaaacgt ctcctatcaa gtagttgtgg cattctaaca ttgctatgac tatggggcta
     1081 ttccacagct cctaatcaca atgaatccta ttaaaaacat ctccctgcgg tttatgcgtt
     1141 ggtcagatgc acagaaatcc ttttcatgta tgcgtgtgag aagcacaaaa tacaaagggc
     1201 a
//
LOCUS       KCLA01002412             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39244upu ultra-conserved element locus uce-4443,
            sequence.
ACCESSION   KCLA01002412
VERSION     KCLA01002412.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39244upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-4443"
BASE COUNT          249 a          129 c          153 g          254 t
ORIGIN      
        1 ctggctaaaa ttcaacattt atatcattgc gttgatggtc tgtttatcac tgaacaagtg
       61 agtgcctttt ggcaggtcaa gctctttgac acatggagca aacgtgtgct taatttctcc
      121 caaacagaag aattaatata ataataatta acacagaaga gaacagaatt aaaatcaaga
      181 acagtcaaga gttcagttta atgccaggca tctcgcattc tagatattag gacaaatttt
      241 ttcctgtaat gagggttttg caattagtgc tgatgggagc tgaagtgggc cttgaatgca
      301 gagagacagg attccctgta ctttccattt aatgctaaaa actagaagca acaggctcat
      361 ttagtatcag taaaggtcag ttaaaattat agagacatcc tttggagcaa atcctctgcc
      421 ttctatttgc atatttatga actagagatt acgacaggct attccattta ttagagcagt
      481 gctgctatag ttaatagtct gtcagtattt ccattataaa ccccgttttt cagtgcttta
      541 atatctgagc catttaaaat cacatcagga agcaagttgg tcttatgttg ttggccaggt
      601 aaattttttt gttttggatt attttcaata atgaaatgct gttcatctta tatgtgaatg
      661 agacacaaca tttctattgg gcaaaaacac taaagtgtgt aagttcatta gagctttaat
      721 tttctttagg aaagaaggga aaaaggaatc taccagtcat gtcaactggg gcttcacctc
      781 tgaag
//
LOCUS       KCLA01002413             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39260upu ultra-conserved element locus uce-5973,
            sequence.
ACCESSION   KCLA01002413
VERSION     KCLA01002413.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39260upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-5973"
BASE COUNT          144 a          163 c          136 g          125 t
ORIGIN      
        1 gctgacatga gacccagcat taaagccagc aacctggatg ctggcagctc acagcaaagg
       61 ctgggatttg tgggggtggg cagaggacag aagccggagg caagatatgg atctgtaagc
      121 ggagagcaag ggcatctttt ttgatctaca gaatatccca tcctatccca taccttcttc
      181 acaaggatgg tgaggccctg gtacttgaag ggcttggaga actcaatata ctgtgcccgc
      241 tcgttgttga tggtgagggg agccacaatc atgtctgctt ggccactcag cagttccccc
      301 atcatcccat tccactcttt cttgttgctg ttgttaacct gccagagaac cagcacagga
      361 tcagccaaca ccctgacatc tatcccctcc agccaggaca cccctacacg tggccttcca
      421 ccccatcctg gctccagaat tgggtctggg agtgttgcaa cacacaatac aggcaaagag
      481 atatcacagg ctgcccaaac tcacccgctc ttgggtacca aatttaccat cagccaccag
      541 gtgaacctca taggtgaagt tcatcacc
//
LOCUS       KCLA01002414             615 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39276upu ultra-conserved element locus uce-7082,
            sequence.
ACCESSION   KCLA01002414
VERSION     KCLA01002414.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 615)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..615
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>615
                     /note="ultra-conserved element locus uce-7082"
BASE COUNT          135 a          131 c          152 g          197 t
ORIGIN      
        1 ccatgcctcg aacttgtggt atctttaaat ccacaggaga tgaatggctc acgtcctttt
       61 tcccatcctg tttagtttga agtgccattt tttgaaaggc agagttttct gtaagaaaag
      121 gaaggtcact gatgttgctg agtgcaccat ttcccctgaa tttcatgcgg ctgaaattga
      181 attcgtagtg tggttttgcc caagaagcct ccctggataa tattaagtgc tgtccatgat
      241 tctgtagtcc agatggccca tggctggcag ccgtagaaaa ctggtttctg ctcagcagtt
      301 cttcactaat ctggagtgat cgagccagcg gtactttaag agatgtggag tggccataac
      361 cttccctggt tccatcctgc aagcttcttg gaggtacccc atcaccactc tgtagtccct
      421 ccggatggtg ctggctgggt ctcccaggtc gcctaattgg atggaaggaa actgatgtga
      481 gcaggacttg cacaggtagg gagggatggg tgagggggcc actcctttat tagaaggcct
      541 tgcttgggta acatcacttt ttgtgtattt atttttctct aatttttttt ttttaattta
      601 attttaagtc tcagc
//
LOCUS       KCLA01002415             219 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39290upu ultra-conserved element locus uce-4045,
            sequence.
ACCESSION   KCLA01002415
VERSION     KCLA01002415.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 219)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 219)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..219
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39290upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>219
                     /note="ultra-conserved element locus uce-4045"
BASE COUNT           68 a           47 c           39 g           65 t
ORIGIN      
        1 attccaggtg tcttcagttt cttcttggaa ccttgggggg tttggaatcg ccaagtcccc
       61 tgtagagaaa gatgttccct tggcttgctt ccgactccct actgcaactc aaccaccttg
      121 agtttaatgt tatatcattt atctaaattg caaaagacga acaagcaata atgagtacac
      181 aaccacaaaa aaagaaaaga ttgtttttaa gttctaaac
//
LOCUS       KCLA01002416             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39305upu ultra-conserved element locus uce-2266,
            sequence.
ACCESSION   KCLA01002416
VERSION     KCLA01002416.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39305upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-2266"
BASE COUNT          158 a          107 c          131 g          208 t
ORIGIN      
        1 caattccgct gtcttctctc tgcgaatggt tctgtattag tgctaagtgt atttgccagg
       61 atagcttcag taatctctcc ggcagaagca tatttgtgtg ccattttggg aatttctctg
      121 agataggaat ctcgaagata gaattaattt ctaggggaaa cttcatagcc tgtgcatgag
      181 tgctttcttt atcacctgtc tccatttggc attcggagaa ggtaaatcaa agtgcgcgat
      241 ttgttattct gctccacttg agagctgaac taaataacac ttggtctgaa attctgattg
      301 aagttgtagg aggatatact gtatttaatt taatgccctt taatagcatc ttcttgttca
      361 gctctgatgc tgtcatttta aaggttggat cagagtagtt tttccctgta gggagtggga
      421 ggagtaatca tttcagggga aaaaagcagg ctaaattctt agaacactaa tagccacaaa
      481 cttggcctag tgtccaagcc attgttgctt gccctgaggc ttcactttgt tatcactctt
      541 tacaatactc tgaatggttt aggtataaat attacacata gaagttgatg atgttttttg
      601 cagc
//
LOCUS       KCLA01002417            1047 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39321upu ultra-conserved element locus uce-6262,
            sequence.
ACCESSION   KCLA01002417
VERSION     KCLA01002417.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1047)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1047
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39321upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1047
                     /note="ultra-conserved element locus uce-6262"
BASE COUNT          217 a          300 c          285 g          245 t
ORIGIN      
        1 caaagggctg gtggaagcca aggttgattt cagcttcaga agtcttcact gttcacgctc
       61 tccctgctcc caactggccc cccacactgg tgtctgtgca aaggctgaac cagagctgtc
      121 gaaacaagtg aagctcttct gcctttggaa gggggttcag tcagtcagga accctacctg
      181 ctcccagcag gcactaacgg ggtggagggt gttggtttac tctgcctgtc cctgccagca
      241 gctacacacg cagcgagcta gagccggtgg ggaagataaa ccactacagc tacgtacagg
      301 gagggtgtgt acaaagcaag gccaccaagc aaggcaacgc cgctcccgct gggttcctta
      361 cctgtcaaag gctgtcccag ctccgcctgc actttaccct tcgctgctcc ttccagaggt
      421 aaagaacctc tgtccccttt gtagagtttc ggtttaaatg gagaatcttt gtctttacct
      481 tttgatcctt taggcctgcc tgcttgcttc ttcttggatt taccatctcc cttcacaccc
      541 agcagcggat ggacttctgt ggagacacag aggcaacgac cccgtcggct ccgcgtgcca
      601 gcgcacggtg tcggacacta acagctgtta cagactgctc tgcgccttcc cggctgagga
      661 aggggctgag ctggtggctg ctcagccaca gagaagccga gtgacctgct gaaccactgg
      721 ccttcaggca aagctccaca ccctcctgac gcagaggggc cacgaagaga gcggcagcgc
      781 ctactcacca tcgttgggga ctccttggag ttcaatgttg gtggttttgg gcttcttctt
      841 tggtgcctga gacccatctg aggaggactg tctcttcttc tcagagccga ttgcctcatc
      901 agttaaagag ctctgaacag catccggtgg aggcccgtag gggttttctt ctggatcttc
      961 gacttcagga gcaatgggta agtaaagcag ggccttggag tcctccagct cctcatcact
     1021 gcgagggaga aaggcctttc gttaaaa
//
LOCUS       KCLA01002418             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39336upu ultra-conserved element locus uce-4484,
            sequence.
ACCESSION   KCLA01002418
VERSION     KCLA01002418.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39336upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-4484"
BASE COUNT          182 a          140 c          136 g          199 t
ORIGIN      
        1 gagggatgtt tttaatgtta atttacaaag actgagcatg ctggcctgtg aacatgtgac
       61 cgggagttaa gtgtatctac aacagaattg cactcgtgcg gagatgtgag aaaggaggat
      121 gccatgcata gctgcagaac ttcttgaatg agctttcttg acatttacct accctacctc
      181 ttcctcctgt gcatgggaaa gaaaagccac agcttgtgca cccactgcag ctcctggctt
      241 gtgcattccc attttctttt cattgaagct ctgtttgcag ttatacagtc aggtctccac
      301 agagtaattt actggcagaa tctctcccag aatccagctt gaaaccaagc tgtaaaaaca
      361 gctgagagtg taaataattc atgcagacaa tatgactttt ttatgtaaat tcggtgcatt
      421 aaccctctat tataatgatg gacgacagat ataggcgacg ttgcctcggt aagagctaat
      481 ggatggccgc cataaattca ctgcacattt tattgtgttg ctggaaattg tgccttcagg
      541 caatgctgtt tacttttatg taaaactcag ggttccctaa atattacaaa tattttacat
      601 ccgactcctc agcatttggg cacagcacac aaatcaagct ttcttcatct gagttgt
//
LOCUS       KCLA01002419             265 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39350upu ultra-conserved element locus uce-6034,
            sequence.
ACCESSION   KCLA01002419
VERSION     KCLA01002419.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39350upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>265
                     /note="ultra-conserved element locus uce-6034"
BASE COUNT           80 a           48 c           47 g           90 t
ORIGIN      
        1 gaccttgaat ttcagttgga agtttttatt tttatccttt tccttactac tggtctttaa
       61 acctgctctg aggaaagcta tacatgcccg gctggtgctc atcaaaagca agcaatcaca
      121 gctaaatcag catgcaaaat gccactcaac cttgggcctt tattaaaatt tgctgggact
      181 caatttgaga tagcaatcgt tcttattaaa aagcaaaatg taagatagtt tttttatata
      241 aatctctgga tggaatggaa ttgtt
//
LOCUS       KCLA01002420             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39366upu ultra-conserved element locus uce-5596,
            sequence.
ACCESSION   KCLA01002420
VERSION     KCLA01002420.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39366upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-5596"
BASE COUNT          203 a          176 c          151 g          167 t
ORIGIN      
        1 tgagaccact gagctggtcc ctgtagagac cctccaggac cactggcttc ctcctaaacc
       61 ccactggcta agtccacaaa gccttgatgt gctctcatac tctcctgctg cactgcaacc
      121 atctggggca ctgcaagtcc agttggaccc tgccaggtta gtgccacccg cgcatccgcc
      181 cagcagcaca ggcctccctg tcccaaatga caccacagcc ccttggcagt gggagcacca
      241 agctgctcat aagtcattta gtgagactca ttccaaataa gtgctaaggt aaacatgctt
      301 attataatta tccatgtaaa aaagaaatca acaacagcag aacaactttc taatatgcaa
      361 ttacagccat gtattgattt tacaatgtaa tccgctccga ttgatttaat aacacaatta
      421 taggctggct ctcgggatat tagagtggga gattttcata aactccaaag caaaaaacta
      481 agcggctttt aaaacaacac agtcagatgg ctgtttgggg aattattagc gatatgaaat
      541 cctctaaatc tggccgtcgt taccttgtga aaggaatttc tattacaaaa acggcaattg
      601 ccagcctaag agagcgcgaa ggggattgct ttgctgctct gccagggctt aagtcctcac
      661 aaaggtgacc acggggtggg agacaagtgg ggtccaa
//
LOCUS       KCLA01002421            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39381upu ultra-conserved element locus uce-3580,
            sequence.
ACCESSION   KCLA01002421
VERSION     KCLA01002421.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39381upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-3580"
BASE COUNT          310 a          248 c          232 g          254 t
ORIGIN      
        1 aaagtcctgg caagagtggt caaacaagaa tgttatggaa cagtgaaatt atttaccctg
       61 gtgtccacat gacaactaca gcattgggca acgctctgcc atgaacgagt atttgataca
      121 gaaataaatc tcataattaa gtatgttatt ccatccccgg gtagcttggg atggtgctct
      181 ctccactggg ctccgcttgg gttttttatc aaactaaaca agagaaacaa cagcgtgttt
      241 tatgataaac agcaatgtta tggtaatact ataaattatc aacaataccc actggaaaaa
      301 aaaagagttg gtccgggtgt ctattttagt atccgttctg tctggctgtg aggacacagg
      361 aaggtgtgca ttaccacgca cagctacgcc aacgagagaa gataaaggtt tcagcgatgc
      421 agcctcacca acaaagccac tgctgccctg acactgaaat gaaaggtggg aatatgcgtg
      481 ttgccagctc gatcagcacc cattaaacct aataactaac caccctcacg agttcctagc
      541 tctgaattat caaatctgca aagaaaacaa catccgtcca cttttacact ccagtggaag
      601 aggtggtccc tcgcggcggg gctgagcagt ctcgccatct ggagaataaa tcgagtgtga
      661 agtacagtat agtttgggac caagctccat ggcggcagcc cagcagtcag ttcattagtc
      721 ccaaacttgc ggggattaac gcagtatcag cttcaccgtc ggatgggatc aggcaggcag
      781 ggcacaggac tcggggaagt gggtgtcagc aaagaaggag cccctcaaac ttatttataa
      841 agctacacac tataaacaca ggcgcctttg gtatcagtac tgttatagtc tacgatgtgc
      901 tgattcagta cctttccttc tttcccctct tttttcactt tctatgtcaa gacctttcca
      961 cttagaaaca agaaatgcca cagagctgga ggactggcca ctcactcacc ccaaacacag
     1021 cgttaacaca gcaataacga tggt
//
LOCUS       KCLA01002422             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39397upu ultra-conserved element locus uce-1255,
            sequence.
ACCESSION   KCLA01002422
VERSION     KCLA01002422.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39397upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-1255"
BASE COUNT          142 a          116 c          160 g          169 t
ORIGIN      
        1 ggggggaaat aggaggagat gtcaaacctt ctgctttatc ctcatcttta tggaaagtcg
       61 tgttcagttt gtcatttggg caggtaaatg tgggttgact tgttcttagg agccagcagt
      121 gaatggatcc ctcccctctg gggctgcctc aatcatcagt gtgatacctg ctacaggcaa
      181 gagcttgctt ttctgtctgc attgtccatc tctgccttaa tgagggaaac ggttaaatgt
      241 ggaaaggggc gagcctggag gaatgtgtct gccatttgac ttgaatattc cagtggataa
      301 agggagaggg agggagagga gcgagaggaa tccacttaca tcactaaccg ctgcgagtga
      361 gtgcctgtgt gcaggttaag agacagactc gagtgtcttt gctttctgca ggaagcagcg
      421 tttgtatcct aagaggaatt ttttatttag agaaggaagc attctttcta cccaggaaat
      481 ggctttcctt gtgcgttgct atgccaactg cctgcagcca tggtcttcca aagtaagcac
      541 aataacgtaa ttatattggc gtattgcatt cagcctcatg attctcg
//
LOCUS       KCLA01002423             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39412upu ultra-conserved element locus uce-4416,
            sequence.
ACCESSION   KCLA01002423
VERSION     KCLA01002423.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39412upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-4416"
BASE COUNT          285 a          198 c          194 g          263 t
ORIGIN      
        1 gaattttttt aaccacccat cagtacagca ccttacaggg cacattttca aagggattgg
       61 ggtggtgaat aggcaaagca tctctccgtg atttgtctga aagagatgat tcaagtgatc
      121 gcctcagact gccaatagaa aagaaccggg taccatatta aaacctgagg attctgactc
      181 tattttgccc ctggtcgtat cagtcttacc tgaaaagatc tactgcaggc acctctccct
      241 gtgccagtat gggtgcgcag cagacaaaag acataccaga aaggggaaga cagatatgcc
      301 acttaaatta aataggaaat gaattggcca gcaagttggc atgtctgctg agacaaatca
      361 tagacaacat gtctctcaac aacagaactt atttgttttc tcttgccaac agattcatca
      421 ctgcccaggc aaaacaggca aaatacatta gtgtcatggt aaactgataa agagaagtgc
      481 ctcaatctag catcctcaat ggcgaaagtc ttagggctgt attgatctgt gttatataaa
      541 tcttgttttc tgtctgcaga agtgaatcag gaatgaccct taaggttaac aaacattgta
      601 atgtctttca gctggggcag atgcctatgt gctccacaca ttgtatttgg tcaagcccca
      661 tcttgtcatt ttactgccaa ggagcttaac taattgctgg caatcataag acagtttgat
      721 ggaagcaaag aattcctgca attgttgctc ctctccctta ttttttttag ccttaacaag
      781 cactcaaagg catgtagcgg aaaacaatca acactgaatt agtcagcagg agtcttggct
      841 gagctggaac ttgatgtcac gttcatacat agccagaagc agtcctgatt aagctgatat
      901 attttgtttc agtaaacttt tacaaaagag gctttgcctc
//
LOCUS       KCLA01002424             699 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39427upu ultra-conserved element locus uce-6441,
            sequence.
ACCESSION   KCLA01002424
VERSION     KCLA01002424.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 699)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..699
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39427upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>699
                     /note="ultra-conserved element locus uce-6441"
BASE COUNT          180 a          116 c          149 g          254 t
ORIGIN      
        1 gagtatttgt tatacaagga aataaaatta attttcttga aatatacagt aggtagaagg
       61 agttggggaa aaaacagtgc aaggaaaagc ataatgctat tttcctaagc cacatttgct
      121 aaatgcagag ttttgcaagg tcagcagtta tactggagtt gagcagaaat ggcttcagtg
      181 gctttaactt taccagtgcc cttgatgagg tgcagagttg tcagtattct cgtaaaattc
      241 ctcagtgatg gcttcttctg ttctctttat ttccttaagt gaacatctgt ctaattgttc
      301 acctccattg ctttagtgct ttcctcatgc tttctctgtt tccagacaat aaactttatt
      361 ttcttcataa gaattcagtc tacgcaaggg tattaggcag cttgtttgca ccttttaatt
      421 tctggaagtt ttccagaagg gctttttgct gtagttccaa tgggttcatc agtgaatcat
      481 gtaacataat gcagcattgt gtttgggttt ttatccgtta ccttctgttt ataaacatct
      541 gcttggaaat tttctttttg gatttttttt taatatgttc tgtatttttg cgtgcagcat
      601 gtgggtgagg tatccagcag ctacagtttt tcccaggtgt tcaggtagga acagacaggg
      661 tttacctgaa aatggggaga agtgtaagct gctcactaa
//
LOCUS       KCLA01002425             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39442upu ultra-conserved element locus uce-510,
            sequence.
ACCESSION   KCLA01002425
VERSION     KCLA01002425.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39442upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-510"
BASE COUNT          206 a          141 c          168 g          253 t
ORIGIN      
        1 gtgtcttata cttaaaaacc atcgatggaa gtgtgcgttc acagaaagct aaaaaaagct
       61 ccactgttta tttctgcaga catttttctt ttcctcctcg cctttgagga actgctgcta
      121 cccaagccat gcgtatgctc tggctgctcc catatgggtt ttgcattggt accggctctg
      181 ctgttacccc aggaaggaca ccttggccat ttctgaaaag agaaaaacct cagagcttcc
      241 catcgattga tttcctcatg tgattctttt ttggggggtt ggttttattt gtttgggcaa
      301 gtttcttgcc atttaccttt gcatttgcat ttcctattga ttggccgtta ttaaactgtt
      361 tattgtgctc ttttgtttag ctgttcgaga gctaaaacaa aagccactag gccctgtgag
      421 ggacacattt gcatgcggcg agtgttgccc gaggaaatag taattgctaa tgcatattta
      481 tgtggcacaa atttgccatt tgtttatgca taaaattatc aatagtgcag ggtggcccag
      541 ccgtagaaaa tggtgacctt tttagcttaa taaatagaaa tcagctgtta ttgtgaagag
      601 atcagccatt tattctgtgt tgagggacag tgtcaggaaa atgtagattg gtgccggcaa
      661 tatcattaaa tggaaggcca gtgacccttt cggtatagtc tattatattt tatctaatag
      721 gggataaatt actctggttg gcaaatagat taaaaaaaaa aaagataa
//
LOCUS       KCLA01002426             628 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39457upu ultra-conserved element locus uce-4646,
            sequence.
ACCESSION   KCLA01002426
VERSION     KCLA01002426.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 628)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..628
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39457upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>628
                     /note="ultra-conserved element locus uce-4646"
BASE COUNT          184 a          122 c          144 g          178 t
ORIGIN      
        1 tgtagagttc taaaaggtca tgcgcgtgaa tggtgcacct ccacgcaact gggcatacac
       61 aaaactggat gtgaattgga gggttcaccc agtttttgtg ggaatttaac aaattgcaag
      121 caaaatatgc ctattgatta ttaaacatct ctgttgcaat acaggaagga cattgaagac
      181 tgaactatgt gttttagagg ggctgggaac acaaccaggg gaactttcaa ataaaacttg
      241 gtggaccttt ttgctgtaga tttgaaaata agtccagaag gctgagctta atataacatg
      301 tggcaggtgg cccgcatttg cctggagaat tcctctaggg caaggcagct cagcaaacac
      361 ataaatcctt ttttctctgt tatctagtag cacatttagt tgccatggga attttattta
      421 tgcagcagat cctctgcagt tcagttggcg cctaaagttt aaccatacag ctgttaccgt
      481 aaatacgacc cgacaataat atcaaatggt ggcaccttgg aacacaaaga acgagtcttc
      541 tccaggattg aattcattgt gtctccctgg aagcttctga agttggtgta aagtgtgtac
      601 ctcctgcgga gcgattccta ataatgat
//
LOCUS       KCLA01002427             386 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39471upu ultra-conserved element locus uce-101,
            sequence.
ACCESSION   KCLA01002427
VERSION     KCLA01002427.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 386)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..386
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39471upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>386
                     /note="ultra-conserved element locus uce-101"
BASE COUNT          119 a           62 c           97 g          108 t
ORIGIN      
        1 acaattcaga aaatgtgaga agttaaaggg aagggaggga cagggctctt ggttttagag
       61 ctgctaaagc ttgggcttta tttccacctt aaaatcttta cctggccatg atctgttgtt
      121 ccattactgg agggcaaaaa tgggaggaac tgtctgggct aaattgcaat tagacagccc
      181 tgagagaggc tggcaccagt taacttggga tattggagtg aaaaggcccg taatcagcct
      241 tcggtcatgt agaacaatgc ataaaattaa attgacatta atgaataatt gtgtaatgaa
      301 aatggaagag gagagttaat tgcatgttac agtgagtgta atgcctagat aaccttgcat
      361 ttaatgctat tcttagccct gctgcc
//
LOCUS       KCLA01002428            1075 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39485upu ultra-conserved element locus uce-492,
            sequence.
ACCESSION   KCLA01002428
VERSION     KCLA01002428.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39485upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1075
                     /note="ultra-conserved element locus uce-492"
BASE COUNT          335 a          225 c          217 g          298 t
ORIGIN      
        1 gaattttaag tttagttaat ttgtctataa aacagtgcca gaggagacaa acccgagacc
       61 tctgtagcac ttagaaaagg tcagggtgat acagcattca aatactttag actttggttt
      121 cttaaggttg tctgtgacct ctgaatgaaa gatgtcgtct caaatatgcc gcagatgatg
      181 ttcttctatt gacagtcttg ctgtatgtgc aaaggacaga tgcatctcaa cttgccaagt
      241 taaagccaat aaatccatag ctttatatca ggcaagctga tatacagcac cctgcctttt
      301 gtcatcaccg gcattcacgt cccccggccc ccagaaagag gggtgcatta atcaaacatc
      361 aacaaagaac acttatcaaa caccggccat gaggacgtcc aggcctccag caagatgaca
      421 gctaaagtgt gcactggggc tgtaattact acgcagaaag ttgtttctat gctagcaaag
      481 ataataaatg aatgaaaatt tatggcaggg aatctaagta gcaaggaaac agaagcaggg
      541 agactggtgt ttctcccaaa aggccaactt gcatcataat tgccatgcag ttgcaagggt
      601 ccttacagat aattgaccag aaaatgatta agtcatcatc aaatcgcttc tgcttgcaag
      661 agttcaaaca tgtacttaac ctatccaaga attatatttt cactctgtgt gtctgctctg
      721 tctctattca gccttgcggg gaacctgatt aaaaagacaa ctgaaggacc cccgttatct
      781 gatcttctgg ttgccgattt caatagaact taaacccatt acgatttgct gaacttggag
      841 ttctttccat tttatctcag cagtaaaata cactgtccaa atttccagac actgagataa
      901 ggactacagg cccccgtgac ggcttactgt tcctttttaa ttcttttaga ataagaaaca
      961 aaacattaca aaatgatagc aggctgtgca ctggggaatg aaaattgctt tgacatggag
     1021 attaggctcc tgtattgtta caagacattg tctcatatgg acaagagtac tgtag
//
LOCUS       KCLA01002429             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39500upu ultra-conserved element locus uce-7054,
            sequence.
ACCESSION   KCLA01002429
VERSION     KCLA01002429.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39500upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-7054"
BASE COUNT          201 a          136 c          171 g          288 t
ORIGIN      
        1 tattttcccc tgtatcgttc caacgagtag acacgtgtgc tcagcccttg cctattatat
       61 tttgatgtca gtacaaaatc tgtggttgag attttttttt ttttggtttg gtttctaaaa
      121 ttgcagctgc atttttctcc tctgatttac aaaaggtttc atggggagtt gagaattgga
      181 taggtttgcc acatcgatcc gggagttatt tgcctaggca tacagtttca gcgtgtggct
      241 ggcaagtatg gcacgaagca gcaatttttt tgtgctcagc tgccgggtat gacagaggat
      301 attttattcg tctgtcagaa cgttattaat aaaacatggg gtgcaaagag ggccactatt
      361 tcccctttca atcactatag catttacaat gaaaatttta tgcagtgtgt aattttcggt
      421 tagtgcttga cacttaaaat gtcggtagct gcgttttgtc tggcttctga agggttaatt
      481 gtatcatgtt ccctgcataa aagctctgct tatcaaaagt gaataggaga gcgtatgcaa
      541 atctatgtct gtgacctttt gcctttccag ggttaattta tatggtcatt aaagatttta
      601 tgaaatggtg tggtctggtg ctttgaatcc cattttactt tcacctccta atttatataa
      661 ttcctacctg aactaggaaa tatgattttt ttattttatt gggtgctgca atgaaaacag
      721 catgctgtgc tgcaaggagc tgcaagtctg gttatctggc attactcaga ttgctaaaaa
      781 ttcattaaaa tgtgac
//
LOCUS       KCLA01002430            1033 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39514upu ultra-conserved element locus uce-2253,
            sequence.
ACCESSION   KCLA01002430
VERSION     KCLA01002430.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39514upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1033
                     /note="ultra-conserved element locus uce-2253"
BASE COUNT          294 a          242 c          189 g          308 t
ORIGIN      
        1 attgtgctca aggacagcaa ctctcgacaa tgccgttact caaacctcac ctgagagcaa
       61 agaagcatca ccagctccac gactgaactg ctggatttca tgcacaccag acctacagaa
      121 gggaaaaagg gggtatataa atacaggctt gtgtggcacc atctgttctc acaagccgct
      181 tccaaaagcc acctacaaga agcattttgg caaggcaaag aaacctggaa ttctcatacc
      241 actctggatt ttgtattcga tcagcacaaa ataaaagtaa acctgtgcga gggagaggat
      301 aaactcagtg ccttccacct aaagatgcga tgcattacct ccactgttca gtttcgtaaa
      361 cgtttgtgcg tcaggatcat caggagtgta gtcaacatat gttacattaa tccactgtat
      421 ctacatcttg ctatttcctg aaggatggag tcattatata tgcagagaag ggaaatggct
      481 ttatgacctt tgctttctcc atcgcgtatt ctcctttctg cctccaccta tcaatcaagt
      541 ttccattttg tttcatggca gcagacatcc caaacattct tattagtact ttgaccctta
      601 accctgcact aaaccttagc agaagcgcaa gcagtaaccc attatatatt cccaactgtt
      661 tatacactca tttgactatt cctatttgta tttgcatttt ggtctgggtt tgctgatacc
      721 tgggctttag gcacagaaat tggtttcagg tgtttctttt tgtctagatg gttcgacgtt
      781 cccaacagct ttatctgctt tctgtgatca cccagtctaa gaaatactca cctctgtgtg
      841 cacaatctat actgcaggca aaatactttg aagccagact atcttgtctt tatcttcaac
      901 taaggaaaaa aaatcactca ctagcttatt tacttcctcg gcaaatgaag cttggaaaat
      961 gaataactca tctgttcgta gcagttgcca tacaaattgg tatcagagca gaatcgcatc
     1021 gttttcggtc tta
//
LOCUS       KCLA01002431             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39530upu ultra-conserved element locus uce-5230,
            sequence.
ACCESSION   KCLA01002431
VERSION     KCLA01002431.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39530upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-5230"
BASE COUNT          161 a          163 c          192 g          180 t
ORIGIN      
        1 tacaatgcac agcggagtca acagatccca cagactgcac agcaagcagg tatttatgtc
       61 tgttactcac ttcctcagct gctcccaggg cctttgctgt tgacaccttg tggttgggtt
      121 taatttattc tggaacgatg gaggagaaag ctgggtgctg ttgagtggaa aattccaaat
      181 gacccctttg cttggagatg ttgagcagtg gaagagcaga ggttgtgtcc ccccaccgct
      241 aatgtgccat gtcctttctc acatggtatg tgcaagccaa ccgcttgtcc ttcatcatgc
      301 aagctccccc aatgtttgta cgactacctt cagcactctc tgagcccaag gtaggaacca
      361 gctcgccgca gcgatgtgtg gctgggaggg gggccgttac actgtaagag agtgagtagc
      421 aggtctcaca gtgaaccggt ctcttttcct gctgtgtcat gccactagta agaaggacag
      481 gcagagctgg actggagcat gcttgggagg gggcagggtt gtgtttgtga cgggtcctcg
      541 cacttcaaag gaataaatag cttctggaga tatttattta aaagctgttg atcattcttt
      601 cacacacacc acccctccaa gggtgtacca acagtaactc cagagtgtgg ggggttgttt
      661 ccgtatgtgc caggtagggt tctgagtggc aaaaca
//
LOCUS       KCLA01002432             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39560upu ultra-conserved element locus uce-2326,
            sequence.
ACCESSION   KCLA01002432
VERSION     KCLA01002432.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39560upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-2326"
BASE COUNT          241 a          120 c          122 g          227 t
ORIGIN      
        1 gaataaatga tccatcagca actgtgttta tttctttaaa ttacatctct ttccacttca
       61 taaaaagaaa ctattttaga atcttcctga gtatagtaat ttattctatc aagtaccatg
      121 aacaaatgtc atgcaaagtt agtgaaagaa aacactgagt tagcagactt ttaaattata
      181 gaaagctgta gtagcatgtg tatactcatg ggaaaggaca ctctcacata agacagatta
      241 tggtacttgt aatgctaatt tgcacatggg atggacatca cacacacaca aaaattaatg
      301 tggccccagt gtcccagaga atacatcgaa ggtgctgtga gccggctgct ccacttgcag
      361 tttttatcac ttctgaattg cattttaata gtacattttt cttttgttca gacatgaaag
      421 aaaattggct ttctcagggg actggatagc tgagaagaca aggctagcag tgtagggatt
      481 tgcccatata tgcacagagt ttagccatag cattcataat ttaatatgaa tactctgtaa
      541 aatctataca taaaatggaa aaaaaccttg aggaaagcaa aagataaatt attacagttt
      601 tccttataaa acttccaaat ctatgtttta atttcacagt ggatcagttc atctttgtct
      661 ttttggaaaa caaatcgcca aagctatcta tgttctacta tgtttgtgta
//
LOCUS       KCLA01002433             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39575upu ultra-conserved element locus uce-6809,
            sequence.
ACCESSION   KCLA01002433
VERSION     KCLA01002433.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39575upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-6809"
BASE COUNT          230 a          139 c          117 g          205 t
ORIGIN      
        1 gatgcaaagg gaagctcaca ccgacaatcc acaaagagag ggcattaaat gactacctct
       61 tactgccgaa atcccaaaga atcatttttc tttacacatc tctatcagga attttattcg
      121 cttccacttg agagaaagct gacaaaatga agcccccgta ctgaacagga tggtaatttt
      181 cataaaacgc acagtcaaac tggtaaagac aaaatcatct caatcctcca atttttactt
      241 caatttgaaa taaaagaacg tgaaatacag tcattgtggg tttcttataa taagaaacgt
      301 tttacaggta ctaacaccaa taagtaatgt atacgaataa ttttctccca gcaattccga
      361 gctgcttgtc tttcatagga tttcttatgg ctatttacat tttcactcag tgaaaatcaa
      421 ttaccttcct gcaataagcc tcatttgcta cctttgagta taatagaaac accattagga
      481 tgatgacatt acccaaaaga agggcaccac acagttggta gacataaatt aaggcccctt
      541 tcacatatgc attagaaata ctgctgtgcc tgaaatatgc ataaaatctg tatctattag
      601 agctattagc gtgtgccggt gatgattttg aaggaggagg gggagattgt gatctactac
      661 tttgacaaaa ttatgtattt ccttttccct c
//
LOCUS       KCLA01002434            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39591upu ultra-conserved element locus uce-1667,
            sequence.
ACCESSION   KCLA01002434
VERSION     KCLA01002434.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39591upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-1667"
BASE COUNT          305 a          191 c          205 g          354 t
ORIGIN      
        1 tgattaggag tgctctgaat tgatggagcc tttctggttt gctcttatag ttcagctctt
       61 aaagtacatt gacctccacg agcttttgat gtatttgggg ctgcgtttcg ggtacttaag
      121 gtaaatactg cctgggcact ggataggtat gtatttattt acagtaaaac ctgatgtatt
      181 aattatttca ttcagcagac aagtatcatc ataaaggctg ggcttatgcg acctagcagg
      241 catcacagca gaaatcataa atactgtagt tctttttagc ttgacaatgg caggtactag
      301 actatcattc ctgttccctt agctactgca ttctttccta tccatcattc tttattgtta
      361 ttatcacact tatttcagcg ttcttctacc agcaccattt agcgacattg tgaaaatacg
      421 gttcagaaag gctgaacttt taattgtgat gagaaataag ttagcttaat tattcaatgt
      481 aagtcgaaaa gatgcggttt gttcctcttc ctaagtcctt ccttcctaat cgcaattcaa
      541 cacccttttc aagcattgct atgtatgaac ttcatgctgc tagacaaata gattctttgg
      601 agaaatgcac atttttattt ggaaataatg ccatctcttt gttagatttg cagcaatcct
      661 attttgcctc tactgttttt aagtcgaaaa tgaaaaatta tatagaagat gtttgtgcat
      721 catattgttc tgaatggtat gtaggtcagc atgctgcacc atagcagata aggcacagtg
      781 aacaagtgtt ctatgtactt acaagcaaat atcagtcata atagaagtag acagatctac
      841 aagagcgttt tggcttagga aatgtttctt gtcattagca tttaaaaaaa gctatgagat
      901 tcaggcctat cagcaccgat tcacagcaaa gcctggcttg cacaggttgt tatctgttca
      961 gtacagaggt gcagctggtt agcaaatgga tttgcagatt tttttttttt agcagggatg
     1021 agtaaaaagg caaagaatca ggtacttaca accca
//
LOCUS       KCLA01002435             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39605upu ultra-conserved element locus uce-802,
            sequence.
ACCESSION   KCLA01002435
VERSION     KCLA01002435.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39605upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-802"
BASE COUNT          246 a          166 c          132 g          276 t
ORIGIN      
        1 ctattgatct ttctctatgt ggtttcctca aggatttgtc agacttcctt acaggttaaa
       61 catccaggct ttctgaagtg gctataaagc tttggttttg attgttcaaa cttttttctc
      121 aaacccttgc tcatccataa tctttaaaag ctcagttgat gccatgcaga gtagaggctt
      181 acttctttgc tgaactaatc tagacactgt ctagtgttga gtacagttgt ctgattcaaa
      241 tcttctgtta caaagcagat gacatctagc tagatgtcat gagaagagac taacaatgac
      301 aattcactta tcccttagaa agaatcaatt ctcccacaat gcatctgtca gagaactctc
      361 actcagtaaa agcaattttt ctagctgtct gacactgtaa ttgctcttaa attttcaatg
      421 aacgttttac aagaactccc ctgaaccatg atgaaaaact taactttttc taaaaatgag
      481 aggctgacag gatgaaagag gtctttctct ttaaagcttt gcttgcttga gtaggaattc
      541 tttcatatca tcaacaagct gttgaataga ggatagatta ctttccattt atttcatcaa
      601 tcagattaaa ggctctcctt cacaatgccc tttaaacaag agctgtttat gatgtcctcc
      661 caggttctac tttaatgtag tattaaatca ccctgagcag agaggcaggc aaagcatata
      721 tatatgatga atatctgaca acatttaaac attacgtaca ttcaggtcag ttcgctattt
      781 cttgtcattt tacaataaat gtgaaatccc tctatcctcc
//
LOCUS       KCLA01002436             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39621upu ultra-conserved element locus uce-5278,
            sequence.
ACCESSION   KCLA01002436
VERSION     KCLA01002436.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39621upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-5278"
BASE COUNT          297 a          174 c          166 g          261 t
ORIGIN      
        1 aaactgtcat acaagggatc ctcataacct tctgtaggtt ttacattagc tatacagctg
       61 ttagacttct ttaataattc tgcttttcca aatcatacct caataaaact ccattttgaa
      121 ttagatgcat tttactctcg ctagttggct caaatatttt gaggtaggag catggctaag
      181 acgtaccact cctcactgtt aaacgcatgc aggtgttaat gaacttattt taaaaatggt
      241 cctgagcact gaaaagggta aacacataat aactctgctg tttacaatgg taaacaactg
      301 gaagtcataa ccacaatatt gttcctagtt atttcagcta taacttgcaa ggctccacag
      361 ccagacaaac cagatgaaat atgttgctgc aggtctgctc tgatggatcc ctctgaaata
      421 tccacattat tgcttttatt ttattatgta ccacacttca taactgtaca cagcagagta
      481 caataaaaac tgcactacac tcctttaagt acttattaaa taggtcaaaa agttaccata
      541 acaaataact tgctctactc agggtccatt aataacatat cttgttggga ctccaaaaca
      601 aacatgggga aaaaaagaac agatcagaag cgtcgattat ttggtgctgg tgctcacagt
      661 tttcacttaa agagtgcagt attagtcaca gcattactca gttaattgct gttctaaaat
      721 aagagaattg acacaagatg gaaaattgag ccatacagag gtttggggga aggcaaaggg
      781 caggacagca ttttgatcct acgtgtaagt acatctgatt tgtcaaggga aagaaatgcc
      841 acaaagcctg gtgctttctt agcagaagga gccatgagat acaggactgt gattcatc
//
LOCUS       KCLA01002437             855 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39637upu ultra-conserved element locus uce-6696,
            sequence.
ACCESSION   KCLA01002437
VERSION     KCLA01002437.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 855)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..855
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39637upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>855
                     /note="ultra-conserved element locus uce-6696"
BASE COUNT          300 a          139 c          176 g          240 t
ORIGIN      
        1 tggacaaagg caaaatagaa ggagtctgac tcttagcgag cttttggtgt tttcgttact
       61 ggagaataat tagagctaat gaatatgcag gcaactgagt aaataaataa actggcagct
      121 ttatgtatgt acgcacgcta catacatacg cacataaagg cgtctacatc ctgaagtttc
      181 aggagacgaa gcatcgttta aaatattgta caaatgttgc ttagcttcac tgactaggtc
      241 acaaaagctt tctgatttta aataccattc ttataccttt caacaatcat tttaatatgt
      301 agtcaatggc tttttgtaac gagaacaaaa aagaactatc cgcagttttt caatagactt
      361 tgagctgggg aaagacaggt taatcgaggg ctgcatctag aaaacaacca agtgttgtat
      421 gtttgcactg aatccaaatg tctgcatttt tctaactaaa tcaaagggag tgttatttct
      481 ttttctgctc actcatctga aggtaagtaa attttctctg gcgatcaaaa gcttggtcag
      541 caacaaagac accgcctgct ttttccaccg tcctggtgtg gcaagttgag gaatttcaat
      601 aactgtgaca agggtgactg atttgtgaac tagaaaaggt ttgaatgtca gaaaatttac
      661 attgctccta tcgcagaatt taaataaatt tttaactaaa gaaaaaaaaa taagacgtat
      721 ccgggaattt catgcagcag gatgagaaac aatgtaggtt tgggaaactg acagttttac
      781 ctgaatgaaa gacacttcct taaaaagaaa aagagaaaag gagagcgaga gagagaaagg
      841 ggaaaacaaa ataac
//
LOCUS       KCLA01002438             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39652upu ultra-conserved element locus uce-3394,
            sequence.
ACCESSION   KCLA01002438
VERSION     KCLA01002438.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39652upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-3394"
BASE COUNT          233 a          146 c          147 g          257 t
ORIGIN      
        1 aaggtaattt atatttttgt ctaatatgtc tgccctaagg gtctaacaac tgcaagtggg
       61 aaaatataat taatacagaa ttataaagcc aactgtgaaa tgtattttct ttatttcctg
      121 ttgataactg gagagaatga aaagcaaaaa gctcaactga cattccttgt ttaatgcagc
      181 ttacttagtg actggcataa tgataagtga tggtaattta ccttaaaaac cttaatgagt
      241 ggatcattac tatagagaaa tgggaagaaa actttaattc cacagaggca gagctccatg
      301 gttggctgtg caataaccag acagaactct gaatgagatt cccaagcttc tgttcccttg
      361 ataaaatttt ctctcactct acttttgcaa aggtaatgag gaggtaatga ggcttgactt
      421 gaattttttc aacacttgat tcccttcatt ccctagcagg ctcccatagg atagagtaag
      481 atgttggatt tatataaaag ctgtgctgat agataggtgg aggaggtgag ccatgctatt
      541 tggttttgga ttctgtctgt atgagaatgg gttcaaataa atttcaagtt ctttcagcac
      601 tgtcaattca ctctgatagt ttccacagaa taagacaatt tgactacatg cagaccttgt
      661 cagggctgtt gactgtttat tttggcactt tactgcttct aaacactgac ctttctgtgc
      721 caccttttcc tccccctccc cccccctttt tcactagctt aatacttaca tatgagtaaa
      781 taa
//
LOCUS       KCLA01002439             280 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39666upu ultra-conserved element locus uce-7331,
            sequence.
ACCESSION   KCLA01002439
VERSION     KCLA01002439.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39666upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>280
                     /note="ultra-conserved element locus uce-7331"
BASE COUNT          103 a           52 c           44 g           81 t
ORIGIN      
        1 aaaaaatatg tgttatcaag caatccagag aacattagga attgttgctg tctcaagtct
       61 ttcacagtaa acttaaactc tagacaataa aaacagataa atagaggaaa tgtcaaactg
      121 aattctgggt aatgatcaga tcagcatgct tttatacaat ttccatcact ttgaatttta
      181 aatcaccttt taaggggaac taaagcattc ttgcaaatta gtctgcactc caattaatgc
      241 acccaacgtg acaataagac cagtttcagc ttggctaagc
//
LOCUS       KCLA01002440             366 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39680upu ultra-conserved element locus uce-793,
            sequence.
ACCESSION   KCLA01002440
VERSION     KCLA01002440.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 366)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..366
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>366
                     /note="ultra-conserved element locus uce-793"
BASE COUNT          116 a           91 c           76 g           83 t
ORIGIN      
        1 ggattacggg tttggagtgt tagtgcaaaa caacactgga aataagtcag cttttccagt
       61 cagatttcat ccacatctgc agcctccaca ccatcatcaa aatgcaaccc ccagccctgc
      121 tgcttttata aataataaca cagctgccaa tggcagtagt gctgggtcag cttggctctt
      181 tcctgctcca gctgcccata atattcagga tgagattctg gggtcagaaa aatctaaaac
      241 tcagcaacag gaaaagcaag agtccataga aaaacagcag ctttcccctg gtcaaagtca
      301 ggacgcaggc attctctcgg aacctgagaa agctaaaact gaagaaaacc agggcgataa
      361 ttcttc
//
LOCUS       KCLA01002441            1042 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39694upu ultra-conserved element locus uce-6211,
            sequence.
ACCESSION   KCLA01002441
VERSION     KCLA01002441.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39694upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1042
                     /note="ultra-conserved element locus uce-6211"
BASE COUNT          286 a          193 c          219 g          344 t
ORIGIN      
        1 aataactcaa atgatcactt agtgaagaga gtttaattat ttgcttatgt actaaaaatg
       61 gtagctgctg aacttcacct taaatgttat ctgtgtgcta aggagaagga ccttttgtct
      121 tttgttactt ctttggatgc atttctttac ctacattcga tatcttttca cattctcttc
      181 ccagcacgct gcttgacacg tttttcacat aattaaatat tttaaataag ccctgacgta
      241 aaagtactta ctgaaggcaa atagtccttt aatatcacag agcaataacc tctgttgttg
      301 gtaggaactg tgaccgtcac atgtgccgct tgtgactagc aggttctgcg tcacgtgtcg
      361 cacatggcac aatttacggg tttgtatgaa attggggggt tgagtgtttt attctgtttt
      421 ggtgtgaacg tttcactcgt ttcagttcaa gtagcattct tgcagagtcc aggttttgtg
      481 ctgatatgat gtttcctagc tgtaggcatg gcctgtccct actcctggct gtaatttact
      541 ttttggtctc tgtcgccttg agcttgcctt ctgactagtt tgttgaatga tgtgctaatc
      601 cattatattt ttcagacaag tgtatcgacc agtataaaca gactggaggg cacaaaccta
      661 aatgaaagct atactacctt gaatcattta aaaagctcct gcagtggtgg cagtgcaaaa
      721 taacttttct ctttacatta aatataaggg gaaaatttca ataaataaaa taaggttgtg
      781 gggaggggga gggaagggga agctttctga gcacattata ctgcttttca catgggcgcg
      841 tttagttaca gggggaagag acagataatg ttagttaacc acttgagaat gtgcttctag
      901 atgataaatt tgaaaccgag ccccaagccc tgcattactt gccatttccc attgtccaga
      961 cactctcaca acacatgatc catgtttgaa gtcatgtact gtattgaaac gtttttatac
     1021 aaataaagga tggagagtaa cc
//
LOCUS       KCLA01002442             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39709upu ultra-conserved element locus uce-541,
            sequence.
ACCESSION   KCLA01002442
VERSION     KCLA01002442.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39709upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-541"
BASE COUNT          226 a          134 c          167 g          197 t
ORIGIN      
        1 gtaatcctgg gaaattgata ggataaatgc ggcgtatctg aataaaattc ttatcatact
       61 gcagaaatac aaaagcattc ttggaatcgc agagctgcat gatagagtgg ttgtttttta
      121 aaagatcctt tattttttca tgggaaaaat gatcaaattg ataagccaag agggaaaagt
      181 tggagcagct gaagtccttt ttggaaaatt tcaggtatat actatatttg gtcggatctg
      241 ggttttccag cgtccaggta cagtttgtga agttcttagg aaacatttca cttacagaat
      301 acgatccata aatgaccccc ttcaccagtg tggaacacca gaagtcttgg gcagcattaa
      361 atccaaacat aaccagtaga taggtggaaa atatataaat cagcaaatta cgaacagcct
      421 tcatcctatg tcatttggcc tgcaggagat gaaacggaat aaaaatgcag gaagaattcc
      481 tcacgcattg aaaagcaaac tctttcaaac attcgagcca gctgttttcg agcttgcggt
      541 gagagcccct ttcggaaaga agggcaggta atttttattt tataacgcca gggctgggtt
      601 gggtgctgtg ggcgcagcgc catcgcgtgg ccaccgcaac ggccaaggct ttcacaggaa
      661 aagcggaaaa ttatctatta gattattaat aggaatgtcc tctcctgtct aggatggagt
      721 catc
//
LOCUS       KCLA01002443             338 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39724upu ultra-conserved element locus uce-6736,
            sequence.
ACCESSION   KCLA01002443
VERSION     KCLA01002443.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39724upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>338
                     /note="ultra-conserved element locus uce-6736"
BASE COUNT          104 a           64 c           61 g          109 t
ORIGIN      
        1 aatcgcatta ttttgggtaa aagcaaggca aggttacttt tgttcaatgc catctttcga
       61 aacgcctttt gtttttctct gtttatttct tcaaggagtg atctgaaata tttactagcg
      121 gacagtaccc aattttaggt tttaagtgct ttaacagctc tatgaaatat gatcagcagc
      181 tgcaatatag aaatatgccg aataaactct cctcataaaa agggagacct gttttgcccc
      241 gagttcataa aatccccgaa gacagaaaaa agataacaga gaaatttagt tgttgcgtcc
      301 tacagcattt gacagagatt ccaggcattt ctttcttc
//
LOCUS       KCLA01002444             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39740upu ultra-conserved element locus uce-211,
            sequence.
ACCESSION   KCLA01002444
VERSION     KCLA01002444.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-211"
BASE COUNT          250 a          110 c          165 g          288 t
ORIGIN      
        1 atccctggag gtgtttaaga gaagactgga tgtggcactt cgtgccacgt tctggctgat
       61 gtggtgatgt taaacattgg ctggactgga taatctcagg tcttttccgg cctcaataat
      121 tcagtgattc tgagatatac ctgaacgtat aaattaccta tgaaagtata attagattat
      181 cttgcatgtt gttgatttac tagtgaagaa gtgggatcaa agtgatataa tgaagcgagc
      241 agtgcatagg gtggttggct tctcccaatg ctttgtgttt ggttaaactg ctgtttcatt
      301 gctggattat atggtaaaaa gattcattgt gagggttacc taacaacgtt ggtgttgatg
      361 aatagttgca attaatacat tcccttaatt agtctgatac ccagaagatg cacctggcag
      421 gtcattttaa tactacaatt gatttattgc tgctagaaat tattttactg gctatcttca
      481 gagagcacaa ttagagagga ttctttttaa tgcattttca ctgaggaata aacataaaag
      541 gtctatgtaa ttcagaacaa agcagctata atgtactaat ggtttatgga ttttattatt
      601 attcagctaa cattagagga aattttaaag aataacaatc tattttctat attaagtatt
      661 ccatttttat tattggagag ctttatttaa aaatgatatc aaaccatcat catttaaatg
      721 agttgctatt atatatggga aatcttatta atggtgtaac gtaagaatat atcaatagat
      781 gtatttgtcg actttgtgct gcatgggata cgt
//
LOCUS       KCLA01002445             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39756upu ultra-conserved element locus uce-5228,
            sequence.
ACCESSION   KCLA01002445
VERSION     KCLA01002445.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-5228"
BASE COUNT          132 a          135 c          134 g           91 t
ORIGIN      
        1 caaaccggca gctaaaccaa gagcaaaagg aaggaacccg gtgccaactc catccgctcg
       61 aaaggaccga aagggaacgg ttttgctaaa acctcaaagg acacacggca gcttggttag
      121 gagtcttgca tcgagttccc gtgctgcaga gcccgcccga tgctgtgaag atgccggtag
      181 cacgctcaca gcaacggcat cgacaggggg atctcgtgga ggacagtcca aaccgaaacc
      241 cgacggggaa acagggagaa aaataaaaag gcaccgggaa aagccacgcc gctcacgcgc
      301 accacagatt taactctcta catggaggaa gccaacctgc tcctttttga tcttcttctt
      361 tggcacaacc tcagtggatt tctccgactc ggagcgcgtt cgaatcgatc ttctctgttg
      421 cttcttttct acagaacctg aggaaggaaa gaggtttccg tcaggcgacg cctcgtctgt
      481 caggaggcgg gg
//
LOCUS       KCLA01002446             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39772upu ultra-conserved element locus uce-1060,
            sequence.
ACCESSION   KCLA01002446
VERSION     KCLA01002446.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39772upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-1060"
BASE COUNT          270 a          169 c          221 g          319 t
ORIGIN      
        1 acagattgaa gaaggattca aacacgcatt ttccaagtaa tgtatttgca aacgagtgct
       61 ctgtggccgg tcacaggatc tattagttgc atcttcaggc ttaaaacagc tgaggctgag
      121 ctgtgttctt gtacgtgctg atgctgaggt ggacttttgt ggcttgtgga ctctgatgtt
      181 aagcagcagc tctggctcgt gctgcaggac caggtaaggg actttgagct gaacaggagc
      241 atcccgtgag gcttgagtag ttgctttttt gctctggatg tggatgcttg cacagagtgg
      301 aagaaggctt aagtgtgtct gtgaactaga agtgcagagg gagatgaaaa ttatggatac
      361 tctctgttta ctccagctgt agactctctg tgggatgcat cttaaagttt gagactagta
      421 acacacttct cttctcttga caggctggta aaaattgccc cccaatatta tgacatgagc
      481 aattttccac agtgcgaagc aaagagacag ttggatcgca tcattgccaa acttcagtct
      541 aaggaatact cacagtactg aatttctgtt tgaactgaag ttactcagag gacagcttta
      601 agagatgaaa ggattcaaag ttcaagttgt gctcttcact ttggttcaat aatggccttt
      661 atttgaaagc tttttaattt ttctttacag taaatattcc attctgattt cataaattaa
      721 acatttatgc ctcccttttg tgttgacact gtagctcata ctggaaaagc tgatcaatgt
      781 tttgcagttt attgaaagta gttctatata taacaatgtt ataagcattt ctttagaaat
      841 ggttgaaaat gcttctaaaa atgtgattat cgaccatggt atgcatgatc gttgtaattg
      901 ttgacattcc ttttagaagt tgtgaaatgt tacaactcgt gcttatgtag acacaatctt
      961 cggcttcagt acagaggta
//
LOCUS       KCLA01002447            1075 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39802upu ultra-conserved element locus uce-6474,
            sequence.
ACCESSION   KCLA01002447
VERSION     KCLA01002447.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1075
                     /note="ultra-conserved element locus uce-6474"
BASE COUNT          272 a          227 c          255 g          321 t
ORIGIN      
        1 gtcaccagaa taatgaaatt ccttaactac ttctctttaa cttgcctgaa gaaagcgtgg
       61 tatgttgcta aatcgctttt caccggccct gccgagaaac aactttaatc cttgttagaa
      121 aattgcagag tctgggcctg acaaagagct catgcctggc gcattgtgag tgctgggagc
      181 ggggcgaggg gagcccttta cagctgcgtg cctccagccc gcctcagctg gactatttag
      241 gcgaggaggt ttgtcaattc ctcccgacaa tggagcgagt ttttcagtgc ctgtagccgc
      301 gccgagcccc gttggggatc aatgctggcc attcaagctg taccctcttt cattgctttg
      361 gtttgttaat ttaagactaa aggtccgctg agggggttta gggtgtttaa gaaagctgat
      421 gaactgttta agaaatctga tgaactgaga gcgtttatag ccctggtgtg gcaactattg
      481 gcactgaggg agctgtgtcc ttgttgaccc tcttgttatt aaaaatgcac aagtgctgcg
      541 cttctcaata tttcaacact ctttcattgt caataccacc ttctgagccc ttcagcttgt
      601 tgcttgctct aaagatcttc ttagattggg tttgaaaact tcaccttaaa cactagatta
      661 gactgatgtt ctgttttccg tgctcctgtt gatttgttga accttcccag ggctggaaag
      721 caagtagcag cttgatgggg agacgggctg ctaatatgat ttaccagtct acagtcatgc
      781 acaataagtg tgaataaata caggggtctc acagagtcaa gcctagcctt tccttttctc
      841 ttatttttta ctttgaaaga agtatctcaa gaaaatgaag tgagtaatgc atgcccttac
      901 aggagctgga tgagctacga ataagaagcg agggggaaca ggggggcaca catattttgt
      961 tttatgtgtg tggctgctgt tatatgctga tgtgaaaaaa atactattcc cttactgctg
     1021 tattcttgca tagacaacag caaaaaatat ggcactaata ctatacctga cctct
//
LOCUS       KCLA01002448            1176 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39817upu ultra-conserved element locus uce-4642,
            sequence.
ACCESSION   KCLA01002448
VERSION     KCLA01002448.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1176
                     /note="ultra-conserved element locus uce-4642"
BASE COUNT          276 a          285 c          312 g          303 t
ORIGIN      
        1 aggagcctgg gagggggttc agcagactgg agcctggggg agactagctc tgtctggaaa
       61 aacagagtac agagctccct gtgactgcag atgtgtcatt gctgccagtg gcttggtggc
      121 ccctgctgcc ttgccaagag ctgagagcac agttgcctaa ggagcgttgt taaatcaatc
      181 ttatcatttt ccctatttgt tcaagatatc ttgtttatcc tccattattt catctctggg
      241 ggtctgttca tgagggcttg aaggacacct taattaacag cagcagcagt agctggcaga
      301 gaggtagtag cgtgtctctc ctttcctgcc ctgccatttc ttcggtcaaa gaagtcactt
      361 gcaacttctt tcatcattcc ttctcctcct ctttccctcc cccatgttcc gactccctgc
      421 cctgattcaa gagcttgaag gtctgctggt ggtagccgtg gtggctgcag ggaggaggga
      481 atggggaaaa aagcagaggg agtaaaataa gtgtcaagga attcattgtc tgttctccac
      541 ctgttgttat tctggtccca atcaacctgc tagccaggct ggagccagtg gccatctgga
      601 aacactgctc tgtttataaa cttggcatga agcagcactc ccgggccctg acctcccaca
      661 caaatctgga aacaattaga gcaagatgat aggcaggcag ggagaggagg ggagagagaa
      721 agagcgcctg ggagaggagg ctgcagagaa ggggaaaaca cagggagaag gggagcgtgg
      781 agaaggtggc gaatgtttct gagatgcaaa tatttatgcc cacctcaaat gaccgctggc
      841 tcattaatta ctgctcttgc caaagcagct tttttccagg gaggctaagg catgcctctg
      901 tgccttcccc agcaatacag gttttccaaa ttatatttta tgttttacac cgctaaaagt
      961 tcgcctttat gactcggagg aaattaagat gggtctggta ggtccaagag ctcagccccc
     1021 tgcatgtttt acacttggtg gtattggagt ctgaacgctg cagctcccac ccatttctct
     1081 gaggagtaac gtctttcttt gctactcgca caccccagca cgctgctttc cagaaaggac
     1141 ggctcccagt ctccagccct ctgtagtgtg ggagtc
//
LOCUS       KCLA01002449             593 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39832upu ultra-conserved element locus uce-6265,
            sequence.
ACCESSION   KCLA01002449
VERSION     KCLA01002449.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 593)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..593
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39832upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>593
                     /note="ultra-conserved element locus uce-6265"
BASE COUNT          180 a          107 c          119 g          187 t
ORIGIN      
        1 ccccccagct cttgaaatgc cacgttcgag agacgtaacg gagtaccgag agcaaacggc
       61 cgacggtttg aaaacctggg ggaaaagaac acaaactgtc tgctcagcac ctttattcct
      121 ctgtacttag attgactttc tcgtactaaa atcagttgcg gttttaacca gttaaacatg
      181 cctcttctac agttccattt ttgatagttc aagttggata atacagtatt tgcaaagagc
      241 atgtttggtc atctgtggcc tctgtctcat ccgatccatc ctttagcacc agaaagcaaa
      301 ttaaagagaa aacaaaagta acacttgttt gaaagagatc attaaatgta ttttgaaaag
      361 cctaaagtta tatatttaac agtttttata tgttgtatat ttgtagaaaa tcctatttaa
      421 caattaacgt gataactctg acggtcatga caagtggttc agagttaagt tgtgttttat
      481 tacttcagtt gtctctgaag tgactggtgt tgtttgcttt cttccattgg gacattctgg
      541 atgtaaagca tgaccagaga ggactgtgta gaaaaagcaa agcataatgt tgt
//
LOCUS       KCLA01002450             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39848upu ultra-conserved element locus uce-3788,
            sequence.
ACCESSION   KCLA01002450
VERSION     KCLA01002450.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-3788"
BASE COUNT          217 a          112 c          123 g          214 t
ORIGIN      
        1 ctaaagcctt tggaaactct ggaagccttt aaccttaagt agtctccaca tcttacactc
       61 acaagtttac agagttttac acatttatgt atttgagctt ttcccagtga tcttattgtg
      121 taagttaaga gggggaaata ttttaaagga taattgagag cataaagtct tcttctctga
      181 gtttttgact agaacatgag acagttaact tctgaaaagc atcaagactg atgattttgt
      241 ctatatagca ttgacctgga agctcaacca ttcagactaa taaatcaggc aatttatatt
      301 taatcattaa ctaactccca agctgaacag ctgttcaaaa ttagaaatgg gtcaccccgg
      361 ccaggatgac attacaggca atctataatg cattagaata aaattatagt gatttttaac
      421 tgtctggaaa tttattacac tgcatgttcc aactcttaaa cccttgttag ccaatgtcac
      481 ttgtgattta tggtgcttgg gtggtatggt aaaattacgg aagatttaaa tagacaatca
      541 gtctatgttt agtaaatctt gaaatttcaa agctattttg gagaatgagg tgggtgctct
      601 ttattgttca tgacttacca gtcagtgaca acaagaagag agaatgggta aaccaaaaag
      661 ccctct
//
LOCUS       KCLA01002451             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39863upu ultra-conserved element locus uce-1565,
            sequence.
ACCESSION   KCLA01002451
VERSION     KCLA01002451.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-1565"
BASE COUNT          274 a          205 c          163 g          267 t
ORIGIN      
        1 cacccgtgtt tatatccaca aggcattaaa gataatcacc gctgaccata aatacgagaa
       61 taatgcagcg gggtcaccgc tctgagccgg ctatataaat acagtatgat tagtaatgtc
      121 taagagtaca ttcatcactt aattactttt tccattatgc ctgcacattt tatctaatca
      181 gaacgtaagc ctgcttgctt tcaccttgca gggttaaact aataagaccg cgctgcttcg
      241 aacctcctca aaattacacg gaacgcacgg tctcgattca gacgccgtcc attaattttg
      301 caaggtattt ggcaaatgaa ttttcaatgc gaggggaaag actttgagcg gtttcgaggc
      361 gggccccttg tcctccaaaa agagagcggg ccggtcaatt agcatagctc ccgtgctcgt
      421 tatgaagtca cgggctaatc tgacatactt ggttattaac gtgctcctga ctgaatcaat
      481 ctggcaataa atttccctac cactcttcct aacagctctg cctttatatt ccgatagttc
      541 tatgacaata attgattgtg attcactcct gaaatgtacc aatcccgggg aaatggcatg
      601 ggctttcatt catcactttc agcttcataa gtggaaattt atacaaggta tgcagatgtt
      661 tagagtttgg ggtaatcaat aaggagtaaa taaagattgg cattcactat actccacttg
      721 acaagctcca gcctaatgtt tgtcaagcaa attaaacaca ctcagacttt tcacctgctc
      781 ctacaacagc accacatatg gctctgaagt taaaaataag aaaatgtgca tacattatca
      841 tacataatgt acaactccct ccatttaata tgcaaatttt gtaaaatatt actgaatacc
      901 ttctgttct
//
LOCUS       KCLA01002452             213 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39877upu ultra-conserved element locus uce-5920,
            sequence.
ACCESSION   KCLA01002452
VERSION     KCLA01002452.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 213)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 213)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..213
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>213
                     /note="ultra-conserved element locus uce-5920"
BASE COUNT           58 a           37 c           38 g           80 t
ORIGIN      
        1 aatattaaaa cacaaaaagc caccgttttt gagtaagatg tctgcatatt ttgccttttt
       61 ttttttttta tttccctttt cgatggttta gcgtttaggg cccttcactt gactcactct
      121 ttccatggta actatacaca atgctggcga tggtacgagt tggcggtaag tgaaacaaaa
      181 acgctagaga agaagctttt ttttaattat tat
//
LOCUS       KCLA01002453             966 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39893upu ultra-conserved element locus uce-7994,
            sequence.
ACCESSION   KCLA01002453
VERSION     KCLA01002453.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>966
                     /note="ultra-conserved element locus uce-7994"
BASE COUNT          297 a          173 c          200 g          296 t
ORIGIN      
        1 caagcacaag ggttgaaaag cattactgaa agttccttta cattaaatct gcacggcatt
       61 atgtattgga cacataacat acccagcaag caaggtaaga agtttcttcc aacagtcaaa
      121 agttatagat tatgaacagg aaggaaaatg attgtctgga aaaattaata tactctctga
      181 gttcagacac tctgcaatag gcggtgtaaa ggaaaatagt ataattgtgg attttagaga
      241 aaagatagat tttctagcac agaaactttc tcagcattgt tcaccgaatg agaggaacca
      301 tagctgctgt tcatttttca acaagttaat tgtttcttta gaagtgccac agtcagtagt
      361 agtacctaag taattacctg ctttccagtg gtgcattact gccaaggacc cagctgtcct
      421 gcagctggac tgactcaggt gtggtttgca gctcggcggg caaagcagcc ggcggggccg
      481 gactctgatt cctcctattt gtcagtgagt ttctgttaag tgaggtgatg gatgggtgat
      541 gctgtgctga atgttgcttg tgaggaggtg gcaaaggctg cagggtcgac tggccttggt
      601 tatttggagg ttgttctaag aagaaaggaa atgaaagctc gttatacacc atctcagcat
      661 ttactataac cgaagcagaa caaaaaaatc aatataatcc tatcatctaa tatatttgca
      721 tattattcta ttagcagaca ttcagtgaca ttctctaaga gcaagtttac ccttgataca
      781 ccaagttcta attaatatac aacagatggt aaaattgctt ttggttttaa tttgtttctt
      841 ttttttttaa tctggtttta ttatcaccta cagaaaacag catctgacag atcccctaat
      901 gtgcctttac atttcagctt tttttaacaa accaaccctg aaattaaatg ggtaatttca
      961 gtagaa
//
LOCUS       KCLA01002454             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39907upu ultra-conserved element locus uce-5165,
            sequence.
ACCESSION   KCLA01002454
VERSION     KCLA01002454.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39907upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-5165"
BASE COUNT          180 a          110 c          114 g          154 t
ORIGIN      
        1 aaaattatca tcttttatac atgctttaaa aagaaaaggg tgggggctcg ggaagcagag
       61 caggatctgg tattagtcct tttagtcgtc aggaaattac aaaatgtaca cttgcggagt
      121 aagcaatttt cgcagtctgc tggcacatcc atctttttaa tgagccttgt ttataacctg
      181 acgccatgtt cctagtcacc taccctgttt acatctttgg cccctttaat taagagaaga
      241 accagttaaa agaaagtaag aagaaatatt aatatgatct gattaattca gctagcggga
      301 ggttatgggg taccaaggtt attataacct ataaaggcaa catgagcaaa gctgtgttca
      361 tttgtaattt tattaggcag agcaaattag tgagcccaca tggcaatgac aaaagacccc
      421 ttcctattct ctcttacccc ccaccgaaag ggccaggcgc ctaaagttag gctccatatt
      481 aggcaaatga gagctgataa atctcagcca acaactaatg agaatctcca gaattggagc
      541 tgtgctaatt tgaaaaca
//
LOCUS       KCLA01002455            1145 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39923upu ultra-conserved element locus uce-891,
            sequence.
ACCESSION   KCLA01002455
VERSION     KCLA01002455.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1145)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1145)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1145
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39923upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1145
                     /note="ultra-conserved element locus uce-891"
BASE COUNT          337 a          223 c          246 g          339 t
ORIGIN      
        1 ctactttgaa atcaaaccct ttcaagattt tatttcccag aatcatgtcc tttggtctct
       61 cagtcttgtt ttcacctatt ttgaaataga ccaagttgga tgtttttatg ttgtcaaaat
      121 gagaataatc cacttcttgt gctgtgaact ggacaaaacc aaatatatac ggaaaataag
      181 acttctactc gattccttca gtaaagggtt ttggacattg caaaatgtgt ttgttaccgt
      241 gtagtcaagg agtggctgtt ttaatgaggc aacagaacag gagaaagcta gcaagaaaag
      301 catattctta ctgcagaatc acttttattt tgattatccc cttgtaaagg ggatacatat
      361 gttttgtgtg gttctggata ctaagctgtc cacacaaata tgaaatgatt aaacggagta
      421 gcaataagca gtggcctgta agtattgcct ggtgagagat aatgctgcag ctctctaatt
      481 ggctctctac caggatacag tgtgactgat ttcagctgta gcattaccag tcttgcttcc
      541 accagcacta ttatctcaga gtgacacttc cattactctg aacggagaaa gatgaacgtc
      601 acctgtcagg ggctggttaa ttgtgttgct agatgtatgt taccagggca caggttggac
      661 atttatgaac ataactgctt cctctgatgt ccaccatcct tcaacaatcg atgcagctct
      721 tacagtaagc gcgtaattga gtgaaggcac ttaccactga ggggtgaaga tcagcccgtt
      781 gtgcgggttt cattgtccat acattcagcc caaatgagct gatatctgcc ctttattgtg
      841 tgttgctttc tggaaataga aactaatgtg ccactttcat ttgttttcta gataaatggc
      901 caagatgtcc agaatcggga agaggcagta gcgttgctct ccagcgaaga atgcaagaaa
      961 attgtgttgc tggttgcaag accagagatg caggttagac taaatagatg cactgaagca
     1021 gaactcagat tataccatac attcaccgtc acttgaatga tgaactgtga tgaaatagga
     1081 aagccaaagt tcctgacaaa aggaagaaac acataattgc agaactttgc ccttgtttag
     1141 cccac
//
LOCUS       KCLA01002456             705 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39939upu ultra-conserved element locus uce-3824,
            sequence.
ACCESSION   KCLA01002456
VERSION     KCLA01002456.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 705)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..705
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39939upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>705
                     /note="ultra-conserved element locus uce-3824"
BASE COUNT          154 a          182 c          201 g          168 t
ORIGIN      
        1 ttcaagtgca tatattttat atgtataggt gcgtgtgaga gagagaatat ttaaccctct
       61 aagtgtcccc ctgcaaagtg gacatcttta acgatggtca gcagctcggc cggagtgtag
      121 ccgtagccca cccgtctgta cccggttgcc cccggcagcc accgtcgctc tcctaacccc
      181 tgctcctggg cattgctgca gcaaagggcg gctgtaggtt tctccgtggc tcggtcacgg
      241 ggcagagatt gcctgcgaca ggtaaatagg ctgctggtcg cagtaatgcc aagagtattt
      301 tcagttaata ggggagggaa aatgaggtgt ctggagcgat attggaaagt acaagatcga
      361 tgatccgtcc ccatgtccaa tcagcagcct ttaattgact gtattttcta ggtaattgag
      421 ccgctgtgct cctaaattga agtggaagat ataacaatac atctcactgg gaggaattac
      481 tcattacttc ataatgaaat tttccttttg ctccgtgggg ccggtgccgt taacgccttc
      541 ggcaccggtg ggcatgtccg tggcctcacg ccgggtgccg gccccgggca cacgtggggc
      601 atcgccagtg gcagaggcag acaagtggca cccagcaggc atcaggatct gatgagccac
      661 caccaccggg cagatcggtt tcccttgccg cgccctggtt gggga
//
LOCUS       KCLA01002457            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39954upu ultra-conserved element locus uce-6910,
            sequence.
ACCESSION   KCLA01002457
VERSION     KCLA01002457.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39954upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-6910"
BASE COUNT          319 a          179 c          206 g          303 t
ORIGIN      
        1 taaccactga gatttaaaac ataacatttg ggtttatccc tggagaagac ctagactaag
       61 cagtaacagg acaattcgtt ttacatttgt aagataagcg tggacattct gctttccctt
      121 agtttcttac cccccaacat atagatttgt caaattatgt ttctagcaat ttaattcatg
      181 aaacagacac aaaattttca agtttctttt ggagtttatt tttttagaga aaataaagaa
      241 atggcttcta gaatgagacc tgttttccat accttatcaa taacagttga tcagaaatgt
      301 gtgtatgata gaagggtcaa gagttaatga gatttattaa aatgcaggga agtagaagtg
      361 tgataatcct acacaataag tgactgcaaa gagggaggtg acgagttaac gggaggcact
      421 gtgaatattt ggaagacaac cttcctttaa atgagacact gctggtaacg gtaatgggga
      481 atttgcaatg aagggaagga catgcaatta taatctggct gggccccact ggacaaaaag
      541 tgatttactt gaaagctgcc tttgcactca gtaaatgttc ctgttatggg ctgctcagcc
      601 tgtgacagct ttccagatgt caatcaaatt atcatctatt tacagttgat ttggtagtgt
      661 catttgcaat attccctacg tttctgatga aattggaagc acagaatttt ctccagtttg
      721 ccctggcact cgagtgggca aactgctctt tgcaaatgtc atgtgtccgc ttatcagcac
      781 tctaaggaga gcgatcttcc attcgcctga gtgaatcgct accagatgca aatctctcaa
      841 tcgtcaaggg aagagtatgg caaattttaa tgtactttga aaaactcagt ttacatcagt
      901 gctcaaggtg cggctttacc caggctaaca gtttttgtat aacaatgagc ctaaattaaa
      961 gactgaaaaa caaggaaaat gttttaactc cttcatgtaa cagaaaa
//
LOCUS       KCLA01002458             754 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39970upu ultra-conserved element locus uce-1769,
            sequence.
ACCESSION   KCLA01002458
VERSION     KCLA01002458.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 754)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..754
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>754
                     /note="ultra-conserved element locus uce-1769"
BASE COUNT          227 a          130 c          149 g          248 t
ORIGIN      
        1 ttcatctgag catagttgag ttttatagat ctatttatga gatccaatac tgtaatgatg
       61 taattttcct tgtctaataa atgtagctgt acaagcgaag gatagcaaac atctccattg
      121 tgaccaaaat cctttaaact gcagccactt tgatcttaga gctcatgcta tttaataaat
      181 gctggctttt cttctaacaa tcacgattat ttaaagggtt ttcaaaaggg atcgagcaaa
      241 tcaaataaaa caattactgt tgtatctcat tctgaagtta agtgtatttt ttatgtgggt
      301 cttgtttagt gtctcctccc agttttcatc cattatcaca ataattgagt ttgtagctgg
      361 aattaaattt atcaaattgt gttatcctct tttgaaattg gataggtatc ctggcagtgg
      421 gagctagaag ttaatctgct ttgctaaagc ctccagtggc acagcggcaa caggattgag
      481 aaggctcaaa cattttcctg tcaccctgga cacgatgtaa tttctcctca atcccttgtg
      541 caaataatga catttgaatc gagcattaac aggcttaatt actttaaaat tgtcatttta
      601 atttacactg atatagtatt gatcatacaa gcagagatta agctgttcag tggagcagat
      661 gatggggaat taaacattaa agggtcctcg tggggctgag aggccgcaca gagagtgcca
      721 gaagaggaat gatatttctc cgtaatgaac tggc
//
LOCUS       KCLA01002459             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 39985upu ultra-conserved element locus uce-2516,
            sequence.
ACCESSION   KCLA01002459
VERSION     KCLA01002459.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="39985upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-2516"
BASE COUNT          244 a          169 c          163 g          280 t
ORIGIN      
        1 aaagtttcaa aataccccac tgtttctttc aagcccagtg acaaaggcat gctctgctca
       61 ctcctgggct tgggtgctcc cagcaagcac acagtaagga ccattctcag ctgctcctga
      121 aacccaataa ttagcctgct atggcagcta cctcttgtgg ttttgcctgt gagagacatt
      181 tgacacagta aacatcagag ggatttttca ggaggctctt gtggcgtccg aatggctctt
      241 aattaaccac ttaggtatcc tcgttcactc tcctgcttgg cactttccaa atggtagggg
      301 ttgcactgtg gatctaaaca ccggggaagc atgctatcaa aagatcttgt aaatgaaggc
      361 ttgtgtaaat tatttttaat gattccctcc tggcacatca ttatgtttgt agttacacac
      421 aggcacttca gagatggctc atcttccgta aggtcagctg caggaccacc ataactagct
      481 gcagtcagta aatggcttat taattagcac actgatttta cattgctaag agctctgatg
      541 tatggagcta gaattgtaat tgtgtaggac cgaaataata agccatctca gggctcctta
      601 tgcaaattgc catattataa aatcattacc tatctaaaca ttgagtttta ataagaatta
      661 caatgatgaa ttttatgata attgacactc aaattttaat ctcttggatt tttatcattt
      721 tggtggttaa agtgtgtttc taattaaatg ttacttaaaa tgcaaaggat tgtttaacaa
      781 ttctattcag tttttctaat tcaattcagg ttattctctt tggtcacaga agaagtacct
      841 tcttagtaat aggtat
//
LOCUS       KCLA01002460            1164 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40000upu ultra-conserved element locus uce-5676,
            sequence.
ACCESSION   KCLA01002460
VERSION     KCLA01002460.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1164)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1164)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1164
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40000upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1164
                     /note="ultra-conserved element locus uce-5676"
BASE COUNT          347 a          219 c          248 g          350 t
ORIGIN      
        1 acaggcaccc acactgtgca ttaatctctc ttggcttatc tgttgctgtc tttaatttgt
       61 atacttcaaa attgagtggt gaggtcattt attagactgt ttctgtgaat tttatgtagt
      121 gataagaaag cagtaacatg caatttgttt ttatacaact cacttttgta agtatgatcc
      181 aatatttcct ttctttaact gaacagtgag gaagaagagc cttcagagct agctaagact
      241 tcattggcta catttcaact gtcaccattg tcttacatct acatagagag cagagagaga
      301 gagaggtgta agtacaacag gccattgaaa atgtttatcg atagaaattt ctcctcagaa
      361 gcctccaagc aaacctttcc agtttgtctt gatttttttt cttatttgtt aaacataatg
      421 tgtggtggaa atgattgtta ttatccaaag gacctcactt gctggctcga tgcatctctg
      481 tttatgaaat gccataacaa aagtgagctc acgcttgtgt gcttccaatg cgtgatgttc
      541 ctgtgtgcca gatgggcact ttcatgactg tatgagcgtg gattatttca tttcctacat
      601 ctgggactcc aaatggctcc acagaatgtc acaggagaga ggcacagatc ttcagctggg
      661 gaaacctacc ttcacagggg aagcagctac atcagagggg atgatgtaaa gaatccccaa
      721 gtgatatctg aaagttcaca taaaccaggg ccataaggga aacctttaga acaaggaaga
      781 tgacaaaaat aaacaataac taatgctggc tgtcatctgc agagagtggg gagggaaaat
      841 aaacgctaag cagtttcttg tctggccaca gaagatgtgt ttggaatgct gttctgtatt
      901 tcagctcaga aactcagcgg tgaccttcag atatcagagg gtattacaag ttctacagat
      961 agccagagaa taatacccct aggagaacag gcatatactg tgccattcta gttaacattg
     1021 actgtgtttc tcacagccca ttctagtact atgacaaggc agtcttgtaa aaacttttca
     1081 gaatactaca gtaacagtca ggaatgctgc agtttgtcat aaagccatca caggatttgg
     1141 gataattact tgtttgtttg tttg
//
LOCUS       KCLA01002461             395 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40016upu ultra-conserved element locus uce-1786,
            sequence.
ACCESSION   KCLA01002461
VERSION     KCLA01002461.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 395)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..395
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40016upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>395
                     /note="ultra-conserved element locus uce-1786"
BASE COUNT          124 a           84 c           77 g          110 t
ORIGIN      
        1 gaaggtagga aacatcctag tgtccgtcat ctaagcactg ctatagacta gccagggcaa
       61 aattagtacc agtagcattt accttgttct ataaatggcc tgagcagaat ctcataccag
      121 atctacattt tagttggaac tcagctgttg tttgcgcttc cactctgcgg atgagacagt
      181 ctcaaaagac agagtaggct gaagactggt tggacaactc tataagtgaa gtctcaagac
      241 tcttgtcatt ctagctgtct aaattactta aacaggactc agagggattt aaaggggaga
      301 aacgacatga caaacaatta tattctaaca cactatttat aacaatgccc tttcagatta
      361 ttgttccgct cagactgaca cattactgta atccc
//
LOCUS       KCLA01002462             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40031upu ultra-conserved element locus uce-6399,
            sequence.
ACCESSION   KCLA01002462
VERSION     KCLA01002462.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40031upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-6399"
BASE COUNT          200 a          118 c          127 g          176 t
ORIGIN      
        1 tagtgtttag ataccaacaa cacatcttta cacacaggag cctaatcaga ttgtgattgt
       61 atcagggaat taaaggaaag aggaaaaaaa ggaaaaagga agaaaagaga cacggtgctg
      121 gatatcacca actgagtttt tgataacgaa aagacattgc tcagttcttg aattaacctt
      181 tgtgtcctag acacactatt gtttactctt tccctttttt gttctatgcc ttctggaaaa
      241 ggacacccac acactgtggc agcagctgct cctattaatt taaagctatt acaaaaatta
      301 aaattaaacc caattacttt ggctggttta tagctgggga acggcttagt ctgattgttc
      361 cctctggtta tggacaaaaa caatattcct acctacaggc agctgccagt ggaatactaa
      421 tgcatctagg gcctggtagg aacagattca gaacgcagac tctagctgca tttcttacta
      481 gagaaaagca tcttatcaca gatctgcaga aatgcaccaa cttacagtct aagtcacaat
      541 gaagttgatt tgtagttaga ggtaggaaag cttgatggca gagagcttaa tgctgagatt
      601 tgtcattttg catttccagg c
//
LOCUS       KCLA01002463            1017 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40046upu ultra-conserved element locus uce-3821,
            sequence.
ACCESSION   KCLA01002463
VERSION     KCLA01002463.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40046upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1017
                     /note="ultra-conserved element locus uce-3821"
BASE COUNT          327 a          184 c          224 g          282 t
ORIGIN      
        1 gaaaaaaatg gattaaatat caccaatatt tactatgcat ttacgagcta tattactgaa
       61 atctgcacca caatataaat aaaaaatggt ggtagcccag atgctacaaa ctccgtaaat
      121 ccgtatgttg ctaacaatac cttaaacaaa tgtcctccaa ctctacagat cacctgcttt
      181 aaatacattt ggaacagata tttattgctc tttccatatt ctaaagagtg tttgatatgt
      241 ccatacagct gtgcaacaac ttactatcat tttcccatta ccaaatctgc tatgccaatg
      301 atcctgttgc aaaacacact gtcatactgt aaacccagaa atacttatgg aatacttgtc
      361 tgtgtaatga actaacagac aagtctgaat acttttcccc tttgacaacc tgttggtaaa
      421 aaaaaaagat ggaaaaagga agcataatta catgagaagt ggcagcagtg ttggttaagg
      481 tggtgccatc tgacacagca gacatctggc tcaaggttgg ggaaggtgtt tcagagcagt
      541 cagtagtatc aaagctacaa gtctgcagct catctaggat ggctgtggag gactcactca
      601 ctgtgcagga ggagcactca ctcatggcag aatctgtgct tacagaggct gtttcgttcc
      661 tggggatagt actttcagaa gctaggtatg ggcatttgta tgaaaattgt gaaagggctg
      721 gggatttata aaaatgtgaa ggtaaaaaat catcaagcgt tggcaaaaaa tatggtacta
      781 gatgggtgcc actgtctggt gagaaagagg ctctgttaac tggtaccaca ggaggaggaa
      841 gaggcagtgg agaagcttct gttgctgttt gtctgtgtgt ctgtgaagca tttacctcca
      901 tcacaggggc agttattgtc tggtttccaa gctgagattt aagggaaaaa ataagaaaag
      961 aaacagatta ccaaatgagt aaaaaacttt tccctttgcc tcttgctgtg tgaagga
//
LOCUS       KCLA01002464             265 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40060upu ultra-conserved element locus uce-5239,
            sequence.
ACCESSION   KCLA01002464
VERSION     KCLA01002464.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 265)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..265
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40060upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>265
                     /note="ultra-conserved element locus uce-5239"
BASE COUNT           74 a           48 c           40 g          103 t
ORIGIN      
        1 aagttttatt tcatatgttg tagcaactta ggtaaaacat cttgtttctt tggtaatatt
       61 gtttaaaaag aagtgtataa tgtaatcatt tagtcttgat tttatcatgt gtaccttggc
      121 attattgttc ctaacagtga tggatacaaa cagatcatgc cctatgacct ctaccatcct
      181 cttccacggt atgtaatacg gtcaaccaga tgctaggttt aacaaacaga tttacctcct
      241 attttttact tttctgcatt tctgc
//
LOCUS       KCLA01002465             957 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40075upu ultra-conserved element locus uce-7545,
            sequence.
ACCESSION   KCLA01002465
VERSION     KCLA01002465.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40075upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>957
                     /note="ultra-conserved element locus uce-7545"
BASE COUNT          292 a          191 c          182 g          292 t
ORIGIN      
        1 ttattttaaa taagaacaac aagacgtgca gggttaatgt gtcccaactt aaaacctcca
       61 gtaatctatt attagataat taaaataatt tcaactcaat ttgttgtcat atttgtatga
      121 gcagccagtc tgtgaagaca gtgttttcct accgcatgca ataaaaagca tttcacatgc
      181 atgaaaaact agtgtaccca atttcagacc ataaataagg caattgtaaa atgtaaatgc
      241 ttcgaagcgc tagcgaactt gagccagcaa agcagggatc agaaatttat accctcgtta
      301 ctggtaatta cagtcacatt ctttactgaa ctgtattccc agccaacaca taaaagtgtc
      361 ctgatgcatt acctgtttag aacgaagtca ccccgaacac acatgtgcca gcgagtgaag
      421 ccgcagctct gtggccatgt tagcacatgg agctctgcat gcgctgctgt aaatgtatct
      481 gtctaccttt taagcaaagt agctgaaagc ccctcagggt gttcttacga aatgtaaatt
      541 ctctgacttg gagacctcag cataaaatcg ctgcttttag cggatggcag tttaacactc
      601 tcctttccat tagcaagtga ggaaaaagaa ctgcagtctc atcgttgttt tgatgtctat
      661 tcaggatttc taattcttca tttttcttgg tcagtttaag catctgtaaa actaagtttt
      721 tttcctctga ggaataagca ataaattctt aatgcccttg tgacggatca atctcaacct
      781 gtcaataatt catatttgat acttccgcta tttaagttaa gaaggaattg tgggaagatg
      841 aaccgtattt tgggttcaga ttgacacctc ctgccaaggc tgttaatgtg cctaagaaga
      901 attaaagcac acacagggga gctgaaattc attagtggtc ttcttgtaag tattctg
//
LOCUS       KCLA01002466            1016 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40090upu ultra-conserved element locus uce-6535,
            sequence.
ACCESSION   KCLA01002466
VERSION     KCLA01002466.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40090upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1016
                     /note="ultra-conserved element locus uce-6535"
BASE COUNT          355 a          169 c          179 g          313 t
ORIGIN      
        1 aaagggaatc cttactcaaa gtttaaagta agaaatgcaa agtgctttgc tctcagtcag
       61 acatgctgaa ataacaggtg gggagatgtg agaaaatttt atcctcatta tctttatgat
      121 gtaaatgatc ccctttacaa acctcttcat tgatgcagaa ttaaaaaggc agaacctatg
      181 aaacctgtga agttttgtag gaggaaaata aaactgcaaa atactgcaga gtattttatg
      241 tcctgtacat tcaggcttgt gtgtgcagtt ctagacaaac taaaaaaaag aaatccttta
      301 taaaaattct ttgaccctgc tttttgcatc tgagtggtca tggttgattg gaaaatcaat
      361 gaagtgctgt gagaattgca cctcactgtt gcagaaaagc cacacaaaaa tccaactttt
      421 cacatgagat gaagattgcc tttggttcat ttgctctctt aagacacatt aaaatcaaat
      481 ctatcacccc atttggccat ctgtcaattc tcactgcaca gtaaacgagt agactttgtt
      541 ccttgatcac cagaattgga ggatgttttg ttgttgtaat aaatggttgt aggcctcaga
      601 gacagaaata aatcaatgca atttataaag ttggggtgaa aatgttagat gcagttttct
      661 aaactgcaga gaattatgta tggatgactt gcaataaata aagcaaagct ttagcagctt
      721 acaaaaataa ataatgaaga tgaaggaaat taatgttcag ccctttattt tggaacttaa
      781 aaaaaagttg aataaataca agagttagtt gcacatcaaa ggtgcagctt tccatctgtt
      841 taattttaaa tactcaggca atgaataaga gttaatttcc ttcttctcta aaccagaatc
      901 tacatttaca aatataaatt gcactaacat ccaaaagcac actttctact gcttgctcag
      961 gaattactct gctacttatc tccagaagat tcgttttata gaacagagta tgaatt
//
LOCUS       KCLA01002467             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40105upu ultra-conserved element locus uce-4199,
            sequence.
ACCESSION   KCLA01002467
VERSION     KCLA01002467.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40105upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-4199"
BASE COUNT          226 a          189 c          186 g          245 t
ORIGIN      
        1 aaggggagat cccccttttt cttatgaaac aggcaacact ccgtctactc tccacatgag
       61 cggctacaac gtaattaccc cgaaaaagaa aatgttataa cagaaataat aataatataa
      121 taataattca agtcaacctt tcgccttgcc tgggcatcct ctaccgagag aggtaggagg
      181 aggaaggatc gcactagcag cctggtttga atttgatttg aaccattttg aatatattta
      241 gccccagctt tcccttcttg aatacgaggc tgtcccaagt ttcaaagtga ccgaaaagtg
      301 acaccgtgtg cattttgttt cttattaatc ttacacattg acagtctttg ttaaataaca
      361 aggcgtgccc ttcaccaggc gacattttca tatttgttag acgcgatgac ctgaagttca
      421 cctcggcctt ggacttagtt tttctaaaag gtctataaca gtgtctttta gatagcgggg
      481 tgctttgccc aggtcactac ttctaaggga aaattaagaa aaaatcgcgg gaaaatgtaa
      541 acgttatgga atgtatcgac tgtattccct cctttgttcc tgggaatgac acggcttcga
      601 ggctgctcct gattccgctg gcgggagcgc tcctttgcta ggctagctgc cgggctaatg
      661 ttcgcagttt tgccccaagt tcagcgttta ggaaaagcgg tgacttctgc agcaccgggg
      721 ctactcttaa caacaggact gctggcgaga tttactcgtt ttgtcctagc atagttaaat
      781 aaacacacct aaaatgtgat ttgtgcccgg gttttaaatg aatggtctgt tcagcagacc
      841 ttccgc
//
LOCUS       KCLA01002468             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40121upu ultra-conserved element locus uce-499,
            sequence.
ACCESSION   KCLA01002468
VERSION     KCLA01002468.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40121upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-499"
BASE COUNT          240 a          140 c          160 g          272 t
ORIGIN      
        1 agaaaataga gccgatgctg tactgcaccg gctccctaag atgcagcaag gaagagatcc
       61 cgttattttt tttttttctg taaaggtgtc aggtagcaag atgccgaacg tgtatcttcc
      121 ctccagtgat ggctcagagt taaaaaccac gtagatcttg atatgcaacc taaatttggc
      181 atcaggaaat gggaaattgc atctttaagc agagtacaat caaaaatgaa ttacaataaa
      241 tcctatataa ttgcataggt cattctcttt aatgagattt tattaacctg actgtcaagc
      301 ttttgagtca ggcagatatt ttatcttctt caactgataa aagtgtcagc tataaaccac
      361 catataaata ttcataaatc tacacatctg tggcagccta tcagcatcat tcttttggac
      421 attaaaagca ttctaattac tttctgtcta gcagagctga aatgctgcct gttatagtat
      481 gtgcttggca ggcatgattg cttttgtttg ccatcacaaa tagcagcatt ctattttata
      541 tactgatggt ccagaatata ttcagggttt gactgaagag gatgaatatt acgaagcacc
      601 atctggtttt gataacgttg ggtatattaa ctcatctgtt aatttttgac acatcattga
      661 tttatttatt tagaaaaatt ggagcctgtt ttggtatgtt gctgtttgcc tttgtaacaa
      721 atgtgatgac atttccttac taaacaggga gataggctgg ttaataggat atatggctgt
      781 gtcttaatgc ctgggtttgc tcaggagcag cc
//
LOCUS       KCLA01002469             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40136upu ultra-conserved element locus uce-5418,
            sequence.
ACCESSION   KCLA01002469
VERSION     KCLA01002469.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40136upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-5418"
BASE COUNT          163 a          130 c          108 g          155 t
ORIGIN      
        1 tatacacaaa acaattgaag ggtatattta acttaaactc ctcatctgta aagggaactt
       61 aagctgctta cacagagcaa tatcagactt aaccttctct acacaaactg agcacaggca
      121 cttttagctt cgttatcctc atgccttctg agagagcagg actgcaaaac attcaccatc
      181 cagaacatgg tgtcgtcatg gtctagaaac acgtttgcta gctgcatact gtactttctt
      241 tacctgacct tgcttatttg aagatgcact tggtatagca tgtcagtcac taatgaggcc
      301 taaagtaatt gagcctgatt gaactggcaa gatgctgtct aattataatg acaaatggaa
      361 ttgtctgatc agctatggag ggtgaacggc atggagaaca ttaaagcaag gtcactctgt
      421 gaaggagagc ccctttctag attatttcct tgctctcccg cagccatcca aaactgcact
      481 cttacatctt ccacacgttc caagtacctc tgagatccta gcagacatct ggtaagcgga
      541 agtcctctcc ataggt
//
LOCUS       KCLA01002470            1000 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40150upu ultra-conserved element locus uce-3187,
            sequence.
ACCESSION   KCLA01002470
VERSION     KCLA01002470.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1000)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1000
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40150upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1000
                     /note="ultra-conserved element locus uce-3187"
BASE COUNT          313 a          165 c          193 g          329 t
ORIGIN      
        1 ctctgtactt ctaaattcct gaaagttcaa aggtttgttc attccctaat tctctgtagg
       61 attagcctga gatgtgtgga aattaaagaa tggaagttcc agtgaattag tagatggggc
      121 ttgttggggg tgcggagaaa gaaaagctaa atattcaaat gaactttatg tcattcattt
      181 agatgtcatc cagactgcca gctttggatg agagttttgt gtagtgaaac tatggtcact
      241 agactgttaa agaaaatgat caaaatttat ttcatgtctg acataggaca agtatcagat
      301 caaaatcttt tattttacag aatgaaatct gaagttgcat gtgaaaggga aaaggaaata
      361 gaaaaataag tttaaagaaa taaaaaaggg agtgtgtgtg gggggaaagg cagtactaaa
      421 actgcagtct tagccttcta aacccttttg cttctctgat tgatactttt caattatacc
      481 ttcctatttc actgacattt gaaatgctat tttttttcta gtgataactt caaatgctta
      541 agttccaaca gcaccagcaa ccctgtttag ctgtagtagt aaattggttc cttgtacaac
      601 ataatggcag tgacagcctt ttgctaggga aatgagttct ccaatgggac atgcctatga
      661 taagacgtcc ggttttgaaa ttgtatttct ctgtatcaga attaaatctg gactttatat
      721 ttctttgctg ccactgctct gtagctggtc cctatacagt acgaccaaag actgacaagt
      781 aatgcttaca caggaaccct ttcacttaaa ttggatttgt ccttttatgt ttcctcctat
      841 tattagctat taaaatctct caaacccttt tttaaacagt gatagggttt ggcaaagctg
      901 gaactcactg acttggagga ggaaaaaatt ctagtattaa gaccagtaat ttccttccct
      961 aggtaaaatt aactcacatt tagtaaaata cagtattgat
//
LOCUS       KCLA01002471             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40165upu ultra-conserved element locus uce-2928,
            sequence.
ACCESSION   KCLA01002471
VERSION     KCLA01002471.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-2928"
BASE COUNT          294 a          162 c          129 g          220 t
ORIGIN      
        1 taaccacagt attcaacact agttgtaagt agttcttgag gcacaggtat tctccaagaa
       61 tagaaaaaga aaagctgttt ttctaactag cagaataacc ccaaattacg tagctcagta
      121 caatgagttc actgcaatta tttgcatagc cttatcattt cactaagttg gaggcaaaat
      181 gatctcgatg caacctataa caagcagttt aaccacttga aaatgttgaa atcataaaag
      241 agaagcagcc acaaaaagca caagcttttg cttctcaact ctttcagaca gttccaaaat
      301 ccaggcagac atccagaaga actttctgcc ccatgtctgg tcagtaaaga aattgaggtt
      361 aacctttaat ttttaatgtc acctgcagcc agtgactgct ttttctaatg caagtgacag
      421 ataaacagca aaacactccc aagatgatac acaaagcacc acacgccata agtgcatttt
      481 tatttttata ccaactcaat ttctcaaatg gataaccaat gttcctacta atttacatta
      541 agaattgagt gaggcatgaa aattgttctg atgcacaggc tctaatgtac tgcatagtgt
      601 tctgtacttt attacaatgt tgggggaaaa ctaactacac ttacaaggta cagaaactat
      661 acgtacgaaa acacaagcac atatgtgtct tacaaaatca cttctgagag gactgcaaat
      721 tatccagggc agtctgaagc aaaataagtt attacagtca gtaaaagcaa aaaaaaccaa
      781 aaaaggttcc tattaaaatc ctttt
//
LOCUS       KCLA01002472             974 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40180upu ultra-conserved element locus uce-6258,
            sequence.
ACCESSION   KCLA01002472
VERSION     KCLA01002472.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..974
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40180upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>974
                     /note="ultra-conserved element locus uce-6258"
BASE COUNT          276 a          204 c          220 g          274 t
ORIGIN      
        1 tttaggggca gtgaggagat ggacagtggc cctgtggctc ccatacgcta aggagaaaac
       61 agctatgccc ttcaaagatt tcacaggagg ccatgctctg gaaaggctgc caggcccatg
      121 gggaacccaa ggtctggcac tgctgtcgcc aagtgccact gcaccttccc tgcgcgggga
      181 caccatgtag tgcccgccac aggaaacagt ccgggacctc gctccagggt gtgtcgtttc
      241 ttgtctggtt ggtgccttca taggatggag acagagatta ttttgtaacc gttttacttc
      301 aaaaaaggca tcccgagaca ttatttacaa gagcacataa tttacctatg ctatttggca
      361 aagcaacttc ggaaaagaaa gtgaatgaat aaatacttca taactgctgg tagaacagac
      421 tggctcctgt aatgaagaaa agatttatgt cacgttattc cagcccaaat agcagcagcc
      481 tctgtttgtc tcagcccagt gcttctattt aaatgttact ttcatatatt atgtggcatt
      541 aatttaacta tagctcatta aggcagaatg aaatggttaa attaacttat caacccataa
      601 tgatgatgaa tgaggtatta attcagatac aagctgggca atttgcaagt ttacgcattc
      661 tgatggttct caaataacat tttgaatagc gggtcagcgc ctcaatcaat tacataagca
      721 tgtaaagtcg gtctctcgga aaaaaatcct ttttcatgca tatgcattaa aacatgttcg
      781 caattatcct cggaaattgc cttcattgga ttaagcagca gtcttggact cgggttctgg
      841 tcttccctgt gcctttatta aatccgtgag cagctctggc tgtagcagcc gagccagggt
      901 gtttgtttaa acaatgttta ccgaagaaag gcgaagccgg tgtatttctg tgtgttttaa
      961 taacaatagg caaa
//
LOCUS       KCLA01002473             977 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40195upu ultra-conserved element locus uce-1344,
            sequence.
ACCESSION   KCLA01002473
VERSION     KCLA01002473.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 977)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40195upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>977
                     /note="ultra-conserved element locus uce-1344"
BASE COUNT          291 a          211 c          163 g          312 t
ORIGIN      
        1 aaatttgaaa ccttcgaaaa tctttaaaaa aaagttcccc catatgctct gcaaagatca
       61 aacctggagc ctgatagaac tgcacaatca tcttttgtta gcacttcttg tccatgttga
      121 actgcaaaga aaaaaaggtg gaaagcaagc ctgctacaga tgtgactagc tatgaatatt
      181 catgaatgcc attgctcctc cttttctact ggcatccaag ccattctgat ctccctctcc
      241 ctctgttttt tcctcttctt tccattccct ttccttcctc aagactgaac aagactgcag
      301 ttttatttcg gtaacagcct agtatgatac agttatcagc agtctcagaa gccttttatt
      361 tccattagaa aaaaaacaaa ggaaaaaaga aaaaaattgt aattatccac agttttatga
      421 atccacctcc ccttaatgtt cattatttaa accagcagca attacaagtt caaaggggtt
      481 tagagggcca gcaacccgca taatcactgc caaattaagc gggactcatt cgtcacagaa
      541 gagtacactc tgagcagtga atcatgcatg cagtgacagg cactgattta cataaagacg
      601 aaatctgtgc cctctagggc tgagcgttac tttatctcag tggtcctgtg atatatgcat
      661 tttcttttgg tgtttgaagg ttcagagact gatgctgtct aatacatgat attttattct
      721 cactagcatc actactactg ctgctacttc gtgtatatgt gtatttaaca gtaatacaaa
      781 cttcaaggca cttgagtttt taaaagcgaa gttttggcca gaaacccctt ttctaatctg
      841 ttatgatact tctgaacctc ttgaatgcca gaaccaattt gcaggttgaa tactcattct
      901 tgaaaattat tactgtgatt ctgtccctcc acgttcgagt caacgtaatt attttttgag
      961 attatgtaaa tacttgt
//
LOCUS       KCLA01002474             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40211upu ultra-conserved element locus uce-5129,
            sequence.
ACCESSION   KCLA01002474
VERSION     KCLA01002474.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40211upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-5129"
BASE COUNT          241 a          175 c          214 g          286 t
ORIGIN      
        1 ggaaatgagt agactggctg attccaaact tattatgcaa gattatagaa ttacaaagtt
       61 ttctctgtgc tttcagagag ggaagaagca attgagggga atttgtagga aagttatgct
      121 gtgtcgccca cctcttttct gtacagcttt aattaagttg aataattaat taaatatcta
      181 aggcttgact agcatattct gtatagcaat ttgaaaagtt ctgtgctttc ttgagtgaca
      241 tttggccttt tgaagaacaa aaaattggaa atgctaatgt ttttcagtca actaagggaa
      301 gaaaataaaa atgtctccat agcaacaaag cttctttcta gatgggttcc taagatatgc
      361 ctgaaccaaa agcagatgtc tgatttgaga ctctcgcctc cttcaatgta aacaaataac
      421 ttctaggcag gtgttggaaa taatatggaa atcctattaa ggggccctgg gttcctgtca
      481 ctcaggaagc ccctgccaca aaagggttgg ttgtctgaat aaaggaggca gagtaaattc
      541 tcgttaggct ttagcttttc ccaggaaatg attgtctcag cttgctcttt ctcctgtgtg
      601 cttgaatgca agccatttct tctattgatt ccctctgcca ctcttgcttt ctgcctctcc
      661 tctcctgctg gattaatgcc cgatatctat ggtggtggct gctgctgttt ggggcggtgt
      721 cgcatttctg gttttaaccc ctgtcaggag aagatgcctg agaggtaggc ctggagcagg
      781 agaggaaatg cagacattgg ggaaagcaga gcatccaagt actggcttat gctccagctt
      841 gttggtgtga atttacctgt gatgtacccc atagcattgc aagactggag tcctctggat
      901 gcgggatttt cctttt
//
LOCUS       KCLA01002475             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40226upu ultra-conserved element locus uce-1836,
            sequence.
ACCESSION   KCLA01002475
VERSION     KCLA01002475.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40226upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-1836"
BASE COUNT          254 a          167 c          126 g          245 t
ORIGIN      
        1 ccaaaaattt acagataacc ataaatttta tcggatgcct ttgaacctcc tcagagattt
       61 gcacctgaga accaagaagt gtgagaactg ctgcctcttt caactctctt gtacaaaaga
      121 tgcgtggatg aaaaaaaccc cacagacaag agcgcttgcc gtctcctccg cttgcaaaga
      181 acatgaaaga gtcaccagac atttttattc aaattaaatt atacacattt ttattctctt
      241 tccttccttc aacgtgtaaa aaccccaccc tacgacgaac acaagctgaa agcaatccct
      301 tccaatgggc ccttctcctt attgcacaat ttcttcccca aattacgcag gtataattat
      361 tttgacactg taatgaaaag aaaatgggat ttgggcaccg tgggtttatc taataacact
      421 atttcttgcc agacttcaca gcactgacaa tcacaaagag ccctgtccat tccaatagga
      481 aatatttgat tttactgtag gaacattatt tattttcacc aacttgctat tatcagaaag
      541 gatatgatag ctgaataata aaaatgaaat caaggaattc tggtgtttca aggctttatt
      601 tttttctgct ctcacttttg acattttctt cccctggaga gacaagataa agtgctgtca
      661 taaatgggtg acttttcttg tcaaatgaca gatttgattc tccatggcaa ccacaaatca
      721 aggtgctagt ctgaattaaa gcttctctta aaaggcgtct ttatgtttat aaaatgaatt
      781 taaattaaat gg
//
LOCUS       KCLA01002476             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40242upu ultra-conserved element locus uce-5076,
            sequence.
ACCESSION   KCLA01002476
VERSION     KCLA01002476.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40242upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-5076"
BASE COUNT          270 a          132 c          144 g          283 t
ORIGIN      
        1 aaataagctg ctttcaatat gatgaggaaa tttgccctag tttccagtta ctgagtaata
       61 agtatatttt gcttacttaa agtaaaaaca cattagtaaa gcccatgaat tttttactgt
      121 attgtagtcc tattgaaagc aaattaataa tgatattgtt cctgtagcta acctgagaat
      181 gtgattaatg ttcagtaatg cacattctag tgtatttttg caatatgaaa acctgactgt
      241 ttagtaagag taaaatttca aattaaagca ataaatcaga gttactgaag taaggcctgg
      301 agtatgccac actcctcgac agagtggtat tttgtcccat atttctggca gctaaagtct
      361 ctttatcagc tactgtcttt ccagtcatgc ttgtgttcac gtctttgcta catgcttcgc
      421 tgattacctt ggaaaagggc aatgctgtaa gtgttcaact gacctttcag tttattttct
      481 cttgtgtaat atgaaacatg agctaacaca gtcttagtct gctgattttg agaaagaaat
      541 ctgtctctac acttttgcag ctttctgctc aaatatggtg gatttttact gtaggtaatt
      601 gaagaagaac tttgacttat tttagttatc accacagaga aggaaattat tatagctaac
      661 aaagcgtgtt aattgtcaac taatcataca taaaactact atgagacata gtgagtctta
      721 cttaaatgaa gaaatgtcat actgaaagca tttttctgaa acatccagat gtgtaaaaca
      781 aaaggaaatg tatatctgct attttgcttt tatacaggaa aagaacaca
//
LOCUS       KCLA01002477            1086 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40257upu ultra-conserved element locus uce-1910,
            sequence.
ACCESSION   KCLA01002477
VERSION     KCLA01002477.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1086)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1086)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1086
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40257upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1086
                     /note="ultra-conserved element locus uce-1910"
BASE COUNT          309 a          261 c          252 g          264 t
ORIGIN      
        1 tttctctcag agctatccca tttaagcagg gtaggtttaa taataacagt attattgttg
       61 ctgaaatctt cagggaagct agctgccagc gagagattat ttaaagcagg ttctcccatc
      121 gcccctcccc aatgaaaacg ctcagaaaaa tccttataga cagagaggct cagctttttt
      181 tttttaccta aagccgtgtt tccaaggata aaatcttact tgcaaagatc cttattacat
      241 gcgcgtaccc ttaagctgct gagatgacac caccacttac aggtggtgga gtgaaagcaa
      301 gcgaaagcac caaaccccta aagtctcaag tcactgcaat catcttcaac tcccaaattg
      361 tcctggaagg agaatagcat cggatttgtc ttaggctgtt tggccaaact ggggcacaga
      421 tgggataatg acttttacaa acagcatttt gatgagagga ggggagaagg aatcatatgt
      481 aaaatgcaca aaggctgcat aaacacactg atgcctgcag ctggaacaaa ctaaaaagat
      541 gtttaataat ttagaaccaa gcaggcaggg cctgtgcagc tgttgtgtgc aggggaccat
      601 gaaagtcttc catttgacag ctggctccat ctttccccag ttgctacgtg aagaagcgaa
      661 tgcagatttg ggattagcca atccctgata cccctgccca tctgccacca agacccccag
      721 ctccggctcc tctcgccgga gaagcgcaga cataaaaaag tccacactct cccaaacata
      781 tgtaggcatc aggatcagcc gtcagccgct ccgaggatct gttgacatgc cgccagtaca
      841 tggctgctgt cgtttttgct gcagggcaca ttttgcattt cacacatttg cagaaataca
      901 aaatgctgtt ggatgcaaac aattcagagc ctaattggct gaattacttc gatgctacct
      961 tgtgtccccc acctgattaa catagctcag ctgggagggc tggggaggaa ggagcagaca
     1021 gggatttgga gggcaggtga agctgcgttt gcccatgaaa gccagatcct tagcgacgtc
     1081 ccagct
//
LOCUS       KCLA01002478             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40272upu ultra-conserved element locus uce-208,
            sequence.
ACCESSION   KCLA01002478
VERSION     KCLA01002478.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-208"
BASE COUNT          247 a          193 c          158 g          295 t
ORIGIN      
        1 taggtcttaa aacaatggct tttaactttc tgacctaacg tttcatgtct taatcctaat
       61 tttatgctga ttctaagact ctttgtatta ttaaatcaac ctaggttaat tctgaattat
      121 gtgtctccca cccactatca ataggtcctc tgttttgttc cccagaactg accacccact
      181 ttaacgagaa tctgcagtga attagaaaat ctgtcattgc tggaagagct ggacagctcg
      241 gatatggcct gtcatttctt ctgtacaata cacatccttt gtctgctatc tcttaaacta
      301 acctgacata gcttagcctc ccggtcaatg gtatctttat tctctcctga ggaatgtttt
      361 gttcaccagc attattaaga aatttctgga caatgtttag tggctctgca atcatccaag
      421 gttctattaa aaagctatct gggtaattaa tagcacattt gttctcagcc tcctcccaat
      481 ttgtccatta gtggaataaa agcacaggac aaagggtaat gtggttcagt tatattttac
      541 aagaattctt caggaagttg gaaacacatg atagttttct aaagatacat atgtttatga
      601 gcactctgtg agagcagcaa aactgcatga gccaggagca tttaataagg cttctcccat
      661 gttgacagga cactgcctgt tgactgcgca ctgcctcgca ttgcctctct ccagcctgag
      721 ttggggtgag tttgtgaatg cgctccttca tctcaaccaa atcaaagctt agaaaactga
      781 tttgaaaccc tatgttaggg caccacacaa aacccagaac aaattacttt tatattcttt
      841 cacctggtat ttgaaggctt ttttgaggtt ttgttttaac atctcatcct gaa
//
LOCUS       KCLA01002479            1017 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40288upu ultra-conserved element locus uce-598,
            sequence.
ACCESSION   KCLA01002479
VERSION     KCLA01002479.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40288upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1017
                     /note="ultra-conserved element locus uce-598"
BASE COUNT          330 a          210 c          163 g          314 t
ORIGIN      
        1 atgccccaaa taacccacca ttcctgtaat acttagattt gcatatttag gttagaaatg
       61 cctggcattg ctggattaag attttccccc agtaaaacaa tgccttatct tacattttac
      121 tccagatact atgcagattc ctaaaccaga tgggtccgca cactgaaacc ctgcgtggaa
      181 gcatgcccac caaacattct taccagcaca cacctctaca gctgaaacac atttagaagt
      241 ttcctcttac tcttgaaacc caactgaaaa cagtgacaaa tgcaaagatt ctctctgtag
      301 ccgcccccgt gataacagat gacaagaggc agcacaagct tcatctcttg ctaattaaac
      361 gaatcaatta agagactatt gttgcaactg tgtaactgct gttctatagt ggcaataaca
      421 accccacggg gaggtctttt actacattaa aatgctgtcc tccacaactc catttgatat
      481 tattagaaac agttatttgt gtcttgctgt catattagta gcaaaggcaa attatggaaa
      541 tatgcagacc agaatggtcc cagtatgaga tcaggtttgg ttttcagcct ccaagggaac
      601 aattgctgaa attccaaagt tccctaaagt tctttaatgg aactgataaa tctatcagca
      661 cagcatccat ttagattcta ggtaagggtc acatatttgc atactttcct gctaagctga
      721 tacaattcaa ctagataaat tatcatatta agtttaccct cctgagttaa actgatggag
      781 ttcaaaattg ttttcgatgg ttgtcattaa tcgctgttac atcctaaatg ctcactttga
      841 aatctaattg tgctggtgta ccaagggtca tattaatagc atttttaatg ttaaatcttt
      901 gtaaaacatg tttatttcac tgatattagc actgaagcct aaaagactaa tgagaagcaa
      961 agtatattta ttatcaataa aaacttcatt taaaatttac attcagagac ttaaatt
//
LOCUS       KCLA01002480             669 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40304upu ultra-conserved element locus uce-4956,
            sequence.
ACCESSION   KCLA01002480
VERSION     KCLA01002480.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 669)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..669
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40304upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>669
                     /note="ultra-conserved element locus uce-4956"
BASE COUNT          187 a          116 c          151 g          215 t
ORIGIN      
        1 tgtgatggtg agcacaatta ctctggcgat tgttttcggt gctgctttat taaggtatgt
       61 aatggcaagg gttcaaaccc cagagattgt tgaaatggtg gctttagaga ccacgttagc
      121 atgcttgtca ccagcaactg tatgggattc tgaagcgctg agatttttac ttggatacca
      181 ccgcagcttg taatttttat ttaaatagtt tggaggtttt agacttaata ccctgctttt
      241 ttaaaatgtt ttaaaatctt gttttattcc ccaaagattt gttttccgct gttgcgatta
      301 gatgatgaca gctagctggc ttttagaatt gatcaggaag tattctggca gtcattcagt
      361 gttgtaatag cactttaatg gatatgagct attcacccag atcagactca atgtcaaaac
      421 aggcgaaaat acagctgtca ctctggacaa gaagttacac atatgcaagc agctgctaat
      481 aatactggaa aggaagactt ctaataatgc tttaaaggtg cctgcatgta tgtgcataca
      541 tactgctgct gtgtgtgtag gcactgcctc tcaaactctg agatgtgaat ttgtagctgt
      601 gggtatgaag aagaaaaggc gaacacacac tctgacctgt gtggaagttg caataaattt
      661 attctcctg
//
LOCUS       KCLA01002481            1008 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40319upu ultra-conserved element locus uce-2710,
            sequence.
ACCESSION   KCLA01002481
VERSION     KCLA01002481.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40319upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1008
                     /note="ultra-conserved element locus uce-2710"
BASE COUNT          335 a          143 c          202 g          328 t
ORIGIN      
        1 atgttatatt attcactatt tatctgaaaa ttctgcaggg tgttttgaag aatggtagtg
       61 gtgcttccca gactggattt acattactgc atcacaggta ttcatttaca ataacacaaa
      121 actaggaaat cttcatgctg taccgtgtaa gttggtgtgt gcatattttt agagagaaca
      181 tgaaaaatac tacatttctt aatgtttaac atttggtaat tgtaaactgt tctctttttc
      241 taactttggc aatgataatt ttcattcaga ggaatgaagg ttagtttttt gcatgaaata
      301 atgttggcgg tttaagtgct tctggcacag cagagagaga aagaaggatc tgtccttcag
      361 tctgttcatg gtatagttaa aaaaaaaagt ataaacactg aattcctgag cttgctgtga
      421 gatggaaggt cattaacagg gcacttgagc agattggtat tacagtcaat tgagacggtg
      481 aaacatccta aatggcctaa tgcagcaact aagtgcttct taaattccag aacttttact
      541 tgagcagagc attcatgacc aaaatgaatt tccatttcct tcggtgcatg ctgtatttat
      601 acagtcagag ttgaagaggc aacatggtgt aaacacagca gtttgattct atctccacag
      661 tagcactaat ttgtcaagtt ataaacacga aatctgagta tcagtgaatt acatattatt
      721 acacatggaa ttaatagaaa tggcaggaat ttgtgtgcta atatatacat ggactatcaa
      781 tatagctcca tcagactaat cagtatgcaa attagaatgg tttcgacttt gagaagctga
      841 agttttaaga gtccaatcaa ttcagtgtta taaaaaggat aaattagata tatttaactt
      901 ttttatggtc tagaagtaaa gttttcagga aagaagaatt gataaagata gtgaaggatg
      961 acggattctg aatgttaaca agctatttgg caatactgta tgtagctg
//
LOCUS       KCLA01002482            1074 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40335upu ultra-conserved element locus uce-6396,
            sequence.
ACCESSION   KCLA01002482
VERSION     KCLA01002482.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40335upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1074
                     /note="ultra-conserved element locus uce-6396"
BASE COUNT          298 a          206 c          235 g          335 t
ORIGIN      
        1 acgcatttcg gctgataatt tcacagggtt tgtttggcta atggttcatt tttaaataat
       61 gtcatgtgca tctttaatat cttctgaaaa ccttggtgac aaatatcgac actaggctgt
      121 gctttaatac tgtcagattt ttaatttcgg aaagtgtaaa cattgccaag ttttgaaggt
      181 ctgaaccaag gatactgaca taattttcaa aggcacgggt aatacctcag cacctccctt
      241 caacataaaa cccagaggtc tgacacaagc aaacctctct ataatacact tcatgcataa
      301 caattctgtc acacatcctt cctgattatt tgcaagtccg cacacggaag agtgttttgc
      361 atatgaggtt caggtgatgt attttattgc tgataccgtt tcacctgtat ttagttccag
      421 tgacatggaa aacactgcag ccaattgtcc ttattacagt ccctgtgtat ttctccccag
      481 tgcacttgca cagggggaag atgtgagcat ggagtgtact taactgccag gctgaatggc
      541 tctgtaatgt agcttcagca tggcataaat taagctgtca tttttttggc agcaagtgca
      601 gagaggcgat tttcctgtac tgtaacattt gaaacaacaa ttttctgtct ccagtagtaa
      661 ctgacagtcc tgtgtgatac atgctcaatg tttgtgcttc aggggctgca ggtggaaaaa
      721 gcctttggac taaggtattg tctttattag caaattgagc tggttgttgc agaacgctaa
      781 tatttgctaa ctctttgcaa agagactgtc actcatgcac taaaaaatgt gcttaaaatt
      841 tactagttcc atcagggtat ttaactgtgc tgcttatatg caaaatgctc ttttggataa
      901 tgacttcaga cctgctttca ttaggaagat tgcttaccca aagagagctg gccgctggca
      961 ttttattggc aatgcgtacc aagatgatga cttgaaggat agccaggctg gaaaatgatc
     1021 ttggaatgct tggccagatt caggctggtg agaaaggagg atgctgatga ggtg
//
LOCUS       KCLA01002483             998 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40351upu ultra-conserved element locus uce-7637,
            sequence.
ACCESSION   KCLA01002483
VERSION     KCLA01002483.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 998)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 998)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..998
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40351upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>998
                     /note="ultra-conserved element locus uce-7637"
BASE COUNT          261 a          191 c          232 g          314 t
ORIGIN      
        1 atgggaagag agggaggagg aaaggtgata gggaaaacca agggtttgat tggcatgcag
       61 tgattttgga ctagcaggaa gcaggcgtct ctgctctcca gcccccacat acttctcagt
      121 ccatatgttt tgagagggaa aagaagctga tacttttccc tctaaaatta attcctagtt
      181 agtcagttac tcctgttttt tagctcagag cctactgtca ttgtattttt cacttcagta
      241 attatagagg atattaaagt ggatagacag ttgtagcaat ctgactcttt agacatagct
      301 acttgtccaa gatcaaatga caacagcata tttagggtta cagcctcctt cttttccttc
      361 ttgatctcta ctgcagtaga tttttttttc agtgttacca tggcaacatt atatctggct
      421 gccagctctg tcgtaagtta ttgaactgag actggctttt ggtttagcag ataattaggt
      481 tctgtctcac aggttcattt tcctgtgact gggatgtgaa tatgacctac atctggcctc
      541 aatttcagtg tcacagacaa aactttaacc cttctgagtc tcatcactac tgtacccact
      601 gtggtggttg gtggtgagtg taaacacttt cctgggggtg ttggacacag cacaccctta
      661 tgagtcctca gggctcattg cccgggctgt gctaattgcc agtgaggagg gacgctgcct
      721 ggtttccatt ctcagtctgg gcaaatgggg gaaaagagta ttgctagcac cagatgaata
      781 ttgattgtgt ggtatgtaga tttgtcagaa aggtaagttc actgctcgat tagaataata
      841 gaaataatag aaatgcaaag ggtggtggca ggcattttgt gcttgactca gggatatgaa
      901 atatttatta gaggacaagt gcagagtcac atcttcatct agcaaagcaa caaggaactg
      961 ccattatgtc catgtgtaac tctctttctt ttctcttt
//
LOCUS       KCLA01002484             991 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40367upu ultra-conserved element locus uce-5598,
            sequence.
ACCESSION   KCLA01002484
VERSION     KCLA01002484.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40367upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>991
                     /note="ultra-conserved element locus uce-5598"
BASE COUNT          272 a          206 c          229 g          284 t
ORIGIN      
        1 gtttttccct ccaatttcat ccacaaaaga aaggacaaaa cagagtgtag cgaaaaattt
       61 tagccatgag aagatacttt ctagctgtaa gaaccagctt gttgccaatt tccgtcaaaa
      121 taattcccca ggttaaatcc tggtgctatt gaagtcattg tccgaatact cattggctac
      181 aaggggagat gaggatttgt cccgttcaat tcattagtga tggtatgaac cccaagtagc
      241 attatgcttc ctttaaagaa agagaagctc ctacttactg tttatatact aacgttattt
      301 ctcacacgtt tattgtgtta ctctccttaa tttggtgcca tgctgggtcc ctgtgggatg
      361 ccactcaaac attatgtcaa tgatctcaaa attgaactcc agtgctttat tttacaaatg
      421 gcttctagca gatgtgtggc acactttatt aacttaagta cccattagtt gaaaatttca
      481 ttagtttggg ggaaagggat cagtttcgtc aatagatctg gtatgggtgg accctttgtg
      541 tcaacctgac ccatatcaaa atggattatt gttgtaagtg agacaagtga cctaatgttc
      601 tgcctattat gcacacatga tctataacct tttaaaatac tagtgtggga aaggagcaca
      661 cttcactgca tccccaaacc gcggattcct aacaggtggc agtccttctc ttagcaacgt
      721 ttgccatggg ctgtctgtgt gagcgtatga attatcaggg ggtacagttt ccaaccaggt
      781 aaccagggga aaacggggat ggagaatgaa accagaataa tgaacggccg agcagacgtt
      841 ttaatgagcc cggaggcagc cgctggagct gggtctgtag tgccatcgtc tgactgaccc
      901 gagcatttcg gccaaggcgt ttcgcgtgct gcctgcgcct tctgggctag taaagccgcg
      961 aaggtaaagc tggatgtggt catagcagta a
//
LOCUS       KCLA01002485             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40381upu ultra-conserved element locus uce-3832,
            sequence.
ACCESSION   KCLA01002485
VERSION     KCLA01002485.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40381upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3832"
BASE COUNT          131 a          112 c           88 g          148 t
ORIGIN      
        1 tcccagagct gttgtaatct tcattgctaa tgctgatcta agagcacgga cattattcta
       61 gttcttgaca cgtttaaagt tctctaatga ataaagcaaa cagcttatgg ctgcttggac
      121 tgtcactcga ttgccccgga gggctttaat gtctttaaaa taggcctcct agtttgtatt
      181 taactacctt gtccgcagag gtagagcaga tcaaagatgt gctggaagca taaaaagcag
      241 ctgcccttca ttttccttta attagctaca tctgaccaga ttctttacgg gctctttgtc
      301 acacattcag cagtctatag gctttttgac ctgtccttat gtgctgcacc cttccaagag
      361 cttcagcaaa atgcaaattt aaattcataa acacaagact ctgcccaaac tctttggttt
      421 cactacgcaa atcctaccca gagctagatt attcgggatt tacctgcaga agatgctca
//
LOCUS       KCLA01002486             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40396upu ultra-conserved element locus uce-4851,
            sequence.
ACCESSION   KCLA01002486
VERSION     KCLA01002486.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40396upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-4851"
BASE COUNT          207 a          199 c          212 g          205 t
ORIGIN      
        1 tgtgatggga cctccagtgt ttctcttcct ccagttgaaa acctcttaac aagcagattg
       61 ccgcgacgca gctccgtcct cgacgggatc tgctaagcgc agtccagagg cgatcgatac
      121 ctcgagcagg gagggcttct ccccaccttc tttgcccgac cgacgcatca tcgaggagct
      181 ggtttcctcg cagatcgccg cgagcgctaa tgaccacccg agccttgttc tgctgctcac
      241 ccagacggct cctgataaag atttagcatc atgttccgag tgtcagggct gtcagagcgc
      301 tgagccattt gaccagaaga aaaaacgcac agggagctat tgattacagc ttctcagtgt
      361 cacttgttca ccaggattta ggtattgatg aggctgcgag tgaaaacaag ctctttccct
      421 tgtgggcctc tacccagaag aacaaaagcc aagttggaga aaatattcag ctggtgccca
      481 aatcagaggg tctctgccat cgatcccaga gccccttcgt gttacttatg ttggagacaa
      541 atctgtgggg tttggaagtt gtagagcgtt tgaggccggg tcgcgagtga tgggtttgtg
      601 taggagatga attagatttc acagcgtgaa gatttcagca gagccaaacc agtgtgagct
      661 gcttggttat tgataaaaat tacattaaac gtcgccgagg cattaaagct ccagactagg
      721 gtagtgctcc ctcgaaaatg tccttagggc cctaataaat tttagcagct ttaattattt
      781 gagtagtcag agggttgtca ccacaattaa gccaaaccga agc
//
LOCUS       KCLA01002487             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40411upu ultra-conserved element locus uce-681,
            sequence.
ACCESSION   KCLA01002487
VERSION     KCLA01002487.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40411upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-681"
BASE COUNT          315 a          215 c          161 g          278 t
ORIGIN      
        1 gatcaccaaa ggaacgtgta aatcatataa tgcttactgt aatttgttca gagcttgctc
       61 tgggaagaac ttctctagat agatactaca tatagcccaa tagctacata aaactttgcc
      121 actacatttc agcacaaccc acatcagtga gtgatgctcc agcaccacga gaacacacgg
      181 tttaaaaaac agtcccctac caaattcata catccttcat gctagaccat ttttatcctg
      241 ggcagagtaa ttgcttacct cgtttcatcc atttctattg tctctactga ttactggaat
      301 cgcatttcta gggtaaacaa ggtgaaaaca gctttctatc ccactgcccc gttttcattc
      361 aggaaggttt gaagcaaagg cggcctccca ataagttccc taatctagat aagcaaggct
      421 aagatatctg acagctgttt cacgctcttc atcatcatct gaaacaatca gtacgcatta
      481 gagagtactt ttccctttac aaaggtgata attagataac aagctgagat taaagtaatt
      541 acagttagac agctggcaag gcagcacagt catgttgaaa tattgttgat acttcagcat
      601 ctggttctaa taacagcaca ggctaaaaga ttttacatta attacagcac ataatttaat
      661 ataaacatat ttaattacaa ttgatgagcg ataaactgtt caagaatgac ttaacccctt
      721 acacatgtca aaatgattgg aacttcatat acatctttcc actatagaag caagctccag
      781 ttttaagaaa gggctctaac tggaaaggtg aattagtggt tttcttttaa aatctaattc
      841 aaattgtgtt aaaactgaca gcacgctatg gaattcagga ccatctccag tacagcacaa
      901 ttgctgccca gaactgctgt ctcaaaaatt ccactgcagt tgccacccag ccctgaggca
      961 tcttcagct
//
LOCUS       KCLA01002488             955 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40441upu ultra-conserved element locus uce-4082,
            sequence.
ACCESSION   KCLA01002488
VERSION     KCLA01002488.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 955)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..955
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40441upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>955
                     /note="ultra-conserved element locus uce-4082"
BASE COUNT          297 a          173 c          179 g          306 t
ORIGIN      
        1 tgagtgtata taaaataaaa ttaattaaat agcaagaatg taatttctag tgacactttg
       61 caatgtctga ttaatatatt ttgaatattt tccactgtaa atttgctttg ctcgattctc
      121 ttcccttgga aactgttatt tagtaaaaac taatcaacat gtcaacattt tgtttattct
      181 taaatagcat catttattat tattattatg gtgtcacttt gttgtttgcc atctagagga
      241 ttccaggagc gtcagctagc tgcatcaccg gcctatttga cattcagggt gcctgcccct
      301 tctcccattg ctatgacaag gttatacaaa gtctgcagcc ctgagaaaac aggttccttt
      361 ggaagctgaa agtctgacag acttcgtaca cagcaaggca tccgtgacat cttggcgtct
      421 gccagctcca ttcttgcttg attagttctt ggttacctca gtgataatgt ctggaggcac
      481 tgattaatgt acaataatgg tacatctcac tggaaagata agcttataga agatcaatta
      541 aacagtggca atttcacagg ctacaagcta gaagaatggt acttgcagtg ttttctcgga
      601 gctatttttt aatcagtttc ttctgccttc tctagaattt tcatgtaaaa cagtaactgt
      661 catgggggta aagaaatacc ctgaaaatga aaggtgatgg tacccattaa aattacaagg
      721 gaaaatgaat atgaatcaag gcccctgaac attccttcag ctgtcagaag gttacaaatt
      781 ctgctttgat gataagacaa gaagttgttt caaatgcaaa cttgccataa atggtacata
      841 ggagaatgcc attgtttcac gcaattacat tgttgcctgg gcaaccatgt acaaaagtta
      901 atgtaagtac aggtttaaag acaaagtgtc tcctaaattg gaataaaacc cattt
//
LOCUS       KCLA01002489             759 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40457upu ultra-conserved element locus uce-3909,
            sequence.
ACCESSION   KCLA01002489
VERSION     KCLA01002489.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 759)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..759
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40457upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>759
                     /note="ultra-conserved element locus uce-3909"
BASE COUNT          218 a          135 c          160 g          246 t
ORIGIN      
        1 tatttcaaat aaactgacag acttattgtg ttgtgacatc atagcaagtc ttgtttcagg
       61 tttttgtttg tggctttgtt ctctttcttt tttttaaaga aaggaaataa gcccttctgt
      121 gaattcagca atagcacaag aaattgcatt aacaacattt aagcagagtg ttgaaaacat
      181 actgaaataa atgctagtgc aattcagggg ttgaaaggaa tatgcatcaa aatgcttggc
      241 atttaatttt ttttttcttt gggaatttag ccagtgaaat atagctgcca gtgtctcagg
      301 cctgcgtgtg ttcttctgca atatgctctc gatcaatcag atttgcataa ctaaactgtc
      361 ggcaagcccg ctcggctgcc caggtgcagg gccatttgca tatagaacag tgaggaggtc
      421 ccaagagtca cttcagactc cagtgactgc tgagctcgca gtccacactg cactggaaat
      481 gaaattggaa tgacaaaaaa atggttgtgt tagtctgcaa gggtgaaata tgcacttgtg
      541 tttcaaaggt tatgtagaga tcacaagaca gctttcaggc atgagaatat gcacaaacct
      601 acagaaaagc aaatgctgtt gtgtgaattt tgtttccctt cctccagccc caatgtttat
      661 ttatatgtat gcatgtaggt agttgtatat acaaaaatgt ttattttttt cctctgaagt
      721 tgtgtatcac catgtcacat gttcagtcct taggtatgg
//
LOCUS       KCLA01002490             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40472upu ultra-conserved element locus uce-1405,
            sequence.
ACCESSION   KCLA01002490
VERSION     KCLA01002490.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40472upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-1405"
BASE COUNT          290 a          187 c          182 g          250 t
ORIGIN      
        1 aaaacatcat aaaccaggtg tcatgcagga tgtgttctga cagccggatg acaattatgt
       61 gtgagcatag gtgattatga aataaatagg ggtgaaaaaa aaagcccaca aactttttga
      121 cttgaactcg aatgacacta tataggctga atgtgccggc aaggttccca caatgcactg
      181 tgaaacccga ggctaacaac caccctgctg cgttgaaaac ccccaaaaaa gacaaaagca
      241 caatgaaatg gaaagcttac caccagtagc tttcaaaact acaaactagg caaactatac
      301 atctccacca ctccaatttt gtcagaatgc taatgagctc gctctgatct ttactcggct
      361 tcccgtgttt tctacatctt caaggaccac atggcgctag caaaataaag acaactaaat
      421 gagaatttcg aatgcttttt gtgtcaggac ccagtgcctt tcagtcgacg cactcgttga
      481 atattctcaa cttaaaagcg tacaacaggg ggctgggtat gaacttttgg aaatttgtac
      541 aaaagtaaat gagtgcgatg aggaaaatat gagacaaatt tctgattaat ttccactcca
      601 taatatcaat gacacctctg gcccctctcg tcctcctcta acaagagatg ctgataaaag
      661 atgaatgaat ccatgttgtt gctggtgaat gtttagtggt tttttaatag cggcattcga
      721 cataaaaggc accaggaagt actctgcatt agcagtcgag atcactagtt aataggatga
      781 tgtcttttag cttttgtcac aagattatta gaaaggatgg gtttctgttc tcatcccagc
      841 atactttgga gtgcttgttg agtacaagtg ctaaaatatg ggttttctcc cattattcta
      901 catgcaaac
//
LOCUS       KCLA01002491             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40517upu ultra-conserved element locus uce-4619,
            sequence.
ACCESSION   KCLA01002491
VERSION     KCLA01002491.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40517upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-4619"
BASE COUNT          176 a          132 c          179 g          181 t
ORIGIN      
        1 ggatgtgtgg gcgatgcggg aagcacgaac ttttttgctt ttgtccttag attaacgatt
       61 taagggggat ttgatgagtt tctgggagct ccagcacttt ccctgccggg ggagttgggt
      121 ccttgtgtct cctttcgcct tgttgtgttg gccggctcct ttgtttatcc agccctcgtt
      181 cgacctttta aattgctgtt aatgttttag cgtaacgaat tagtctctca tcacgaatca
      241 ggactcgaaa taaaaaaaaa tatattaaaa aaaccccctc caaggccaac ttcctgaaat
      301 tggggtcatt ctcatttgca aggcagagaa tccgagaccc ttaatgcaag gaaatttatt
      361 caaaggcaga gccccagcgt gattaggccc tttgtaatta tagctcggag agattccact
      421 ccagcctcct gcctccctca tggattagca agtgagtcgg aaaaatacac aggatttaat
      481 tagaggcaaa ttaaaattgg taatgaaata ggggcagtgg caaatggcag ggagttggga
      541 agggaaaagg gagccggtat ctctcggggc tgcgcagtct gcctacgtgt gcgcctcttt
      601 attttacatt tagaaatgta aagatggtcg gtggagagaa gaaagggggg gaaggaccag
      661 aaggggct
//
LOCUS       KCLA01002492             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40531upu ultra-conserved element locus uce-2828,
            sequence.
ACCESSION   KCLA01002492
VERSION     KCLA01002492.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40531upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-2828"
BASE COUNT          250 a          132 c          123 g          242 t
ORIGIN      
        1 atgaagaatt gaactccatg ttcctgcaga cttttactat ctctttataa ctgattgaga
       61 atgttttctg atttatattt taagtttaaa ctgcttgaca aatatttcat tgtcctcata
      121 cagctcactg ctgccacttg tttggaaaaa tgaaaggcaa gttgaaaaat gcacctttcc
      181 cattttaatc tctaattgaa ttctctcttg acccccttat tccccatggc tgtatttctg
      241 ggtttgatga taagaaaaag aattttgtat ttggataata caattttctc acttgccttc
      301 agcgaccttc agctcaattt cctctcccca gagacactgt atattataga actgaatcaa
      361 attccttatt catagaaaaa aagttccaat ttaatctgaa tattcagcat tttacactgg
      421 tcagggtgat ggatggcaaa ttgaaatgct tttggttcag gtaatcaaat ggtagaattc
      481 agacttgtat tgaaaaaaat aatgaagtct attcaatatt ctcctaaggt gcaaaaaatg
      541 cacattacac agtagaactg gagtttttct tattacctaa ccaacaacat ctccattgca
      601 aaaagtatag taaaccatta agaatttatg taggttagaa catgtgaaag actgacacag
      661 ctgatagaaa atgcaggcat ctacctaaga gtgctcaaat gaatgagtac aaaaggtgct
      721 aaaaagggta tgacttagaa gggacct
//
LOCUS       KCLA01002493             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40547upu ultra-conserved element locus uce-2025,
            sequence.
ACCESSION   KCLA01002493
VERSION     KCLA01002493.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40547upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-2025"
BASE COUNT          172 a           80 c           54 g          125 t
ORIGIN      
        1 tgcacccagt gttaaaaaga ggtcgatgta agagatgacg ataaacgcac aaaccgcttt
       61 cattttcttt attttcaatc gatactgtat gaatacaaag gttctagaaa gctacaaaaa
      121 ttctaccact ttatcaagaa ggcatcaaaa tgtgtcactt tgcaaagaca tgaaaacacc
      181 tgcagtaacc gacacaaaaa tagcattttt agagtgatga aataattgca cttaactgtc
      241 atggatatta aagttatcac acatatgtac cgccaaagct agaatacatt ttgttttttt
      301 tacaaagcac tttataaaaa aattctctgc acacaaaacc tataattttc atattactat
      361 catactaaag ataaattcac tttaaagcca acacttaaaa cattttaaac aaaaaaaggt
      421 accagtacct a
//
LOCUS       KCLA01002494            1038 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40563upu ultra-conserved element locus uce-3670,
            sequence.
ACCESSION   KCLA01002494
VERSION     KCLA01002494.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40563upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1038
                     /note="ultra-conserved element locus uce-3670"
BASE COUNT          250 a          300 c          281 g          207 t
ORIGIN      
        1 caggcagagc agaggtgctg ctttgaaaaa tacagagaga gtagtcagag gaatttaaac
       61 ataatagccc agcagaaaag aaatgctcca gagcagaggg actggatgcc aactccatct
      121 gggtgccaac tggcaggcgg gctgcagctc ctcgacgcgc cacccgaccg agcgtgtcag
      181 gttgcgataa tccgatttcc gagggagaag gccctaatga tggtccagat ttatcccaag
      241 gtcccttcgt tcgcagtctt tcaggtacta ctccatctcc gcaaccccgt gagcgcgggg
      301 ctttgtctgc tcctcctgac aaatcgcccc cgacagcgag cgccggcccg acgttggacc
      361 gagctctgct ccgcgcagca gacactctcc caaagcataa cgcgctagac taatgggcag
      421 ttagaagcca gaacgactgc cctccgtctt ctcctcgtgt aactttgcca gagtccttgg
      481 aagttgccaa attcggtcac gcctgcttag cccgctcgac tgattgtgcc agaacgggaa
      541 ataagacaca gatgtatttg agctctccga gatgccagta cgagagacag ctaatggctt
      601 catttcgacc ctcccctacc agctgggcac aggtgggggg ataatgaggt ccctctccct
      661 aatcaaactc aattatttac tactctggac agccacaaag actctggcgt tcagctccag
      721 atagcgaatg caccgagggc tccgtccagc cctgccaccg gggatttata ggcggctcga
      781 gcggcccaga gtttgccttg gcagggcttg aagtgaataa agttctgcaa actgtttctg
      841 ctcaaacatg tcctgctgag acggggtccc tggcgaggtt ccacggctgt cagctcgcta
      901 actgcacaac atctgcagga acagcccgtg tgcagggcga gcgagagctg agaggaacca
      961 ccgggcgccg gcacgaggct tctcagaagc atcagctttc ctcgacaggg attcgacagc
     1021 aataaacatc gcgaggaa
//
LOCUS       KCLA01002495             277 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40577upu ultra-conserved element locus uce-3137,
            sequence.
ACCESSION   KCLA01002495
VERSION     KCLA01002495.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 277)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 277)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..277
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40577upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>277
                     /note="ultra-conserved element locus uce-3137"
BASE COUNT           90 a           46 c           49 g           92 t
ORIGIN      
        1 gagactcttc caacactttg ggattttatg aatgatttac atctggtgct aaagttcata
       61 aatgaaatgt gggagaacca gatgcttcat ttcttgacta catcgtgtct gcacatactg
      121 atggtgaatt gaaaacagga atgtctcata aatcaagaaa atctattttt gtactcttga
      181 tttctattct gaacatccat ataacaccca aacaaatgtg gtaaaattgg ttccctgaga
      241 aacctttatg tttagtaaca gtgtggacat gttaata
//
LOCUS       KCLA01002496             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40592upu ultra-conserved element locus uce-3300,
            sequence.
ACCESSION   KCLA01002496
VERSION     KCLA01002496.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40592upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-3300"
BASE COUNT          160 a          117 c          144 g          216 t
ORIGIN      
        1 atcctcgaag gcctctggca gtagtagcct gataaattca acagcagtgc tgaagctctc
       61 agttgtaact gtaaacctgt aaatgcactc accatgtcag ccacattcta aatgccgcag
      121 ctgagtcaag ttgtgtggga cgggtccctt ctacctccgc agtccagtcc cgtatgaccc
      181 tatgatagaa acaggaggta tgccttgatg caagattgct gtgccccgtt tctctttttt
      241 cagcttgact caatgttatt tatctctttc taatctgaca gggttcgttt acagttaaga
      301 taactgatca gaaggatatg atgataagag gtggaatagt tctgtttgga attaaactct
      361 gtaacccgta gactcaaaca caaacaagct aaaatggtga ttaacgatgc atgtatgttt
      421 tcttcatata gtacatagac ctccgtgtgc tttttttcat ttatttattt attacagtaa
      481 tgaagtggtg ttgatagcta aactgtgtgc ttttatttaa ttgaaagagc tgtagtgaaa
      541 gttttggggt ggtttttttg gtttttttgg tgttgaggag tgactttgcc atggggagca
      601 aagggccttt gtttccttgc tttcaagctg tagcctg
//
LOCUS       KCLA01002497             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40608upu ultra-conserved element locus uce-5,
            sequence.
ACCESSION   KCLA01002497
VERSION     KCLA01002497.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40608upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-5"
BASE COUNT          193 a          140 c          144 g          185 t
ORIGIN      
        1 atgagccaag tgtcaagaca ggaaacctat cattaccagg aataaaaaca agtttctgaa
       61 aaatgaaaca catttggttg tctggcttct actatacagc atttccactg aagattgtaa
      121 ttcctttttc tacatcccat tccccttgca gagagtgtcc ccttgggaag tgaggcccaa
      181 gagtcctttt taggatggga caggatatta cagcttggtt tgtgcaccag catccttaat
      241 atttccttcc tttcagaagc aaatagagca tacccttatc tgaatgctaa tttcctagtt
      301 aaaaccctcc cttgctgaca agggactgaa agagttttaa atcacagatg tagagtatca
      361 aatgcaataa tgctcttgca atagtgcatt gaagcctcaa ttaattaacc cttgggctaa
      421 gtaggcaggt acatggtggt ggccacaggc ggtggatgga tgagatttaa atgggcatct
      481 catttcctca gcacggaaca tgccgtttgg ttcagaaagg agtcatttta cacactcgcc
      541 tcatttgcgc tcagctttaa tccctgtaat tccacctgag atccaagcaa gaatgggaaa
      601 agagagtgaa gtgcaaaagg ctacagagct gggctttgtt tacatatgtt tcccagggga
      661 cg
//
LOCUS       KCLA01002498             441 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40623upu ultra-conserved element locus uce-2736,
            sequence.
ACCESSION   KCLA01002498
VERSION     KCLA01002498.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 441)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..441
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40623upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>441
                     /note="ultra-conserved element locus uce-2736"
BASE COUNT          162 a           63 c           75 g          141 t
ORIGIN      
        1 tggataatgc agcacgttgt aaagagacca attggcagca ttatgtaacg taaagaacaa
       61 gaactcacaa catcgctttt ttcatcacga tacagaaata aaatgagtgc ataaactaga
      121 atggaataca gctctcagtg tttacagaaa taaaaataaa tgagtggttt ttaaattaat
      181 attttcaaat gttcaggttg aattaatttg tgaaatatga atatgtattg gtagtgttaa
      241 ttctttgggg ttttgaaaat tcttacaacc acataattaa acgaatgcct ttagaaatac
      301 tgataaaacc cattgccatt caaatatcca tacaagacaa caggggctgt aagctgtagg
      361 ctttagagat tagtttggcc atgggccagt atttatcaca acatttccat cttagaagat
      421 aaaatttaat catttttatt t
//
LOCUS       KCLA01002499            1048 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40637upu ultra-conserved element locus uce-7095,
            sequence.
ACCESSION   KCLA01002499
VERSION     KCLA01002499.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40637upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1048
                     /note="ultra-conserved element locus uce-7095"
BASE COUNT          335 a          241 c          177 g          295 t
ORIGIN      
        1 tgctttaatg aaaagaataa tggaatattg cttctggtat ttggaagcaa atggtgatca
       61 cacaaaggaa actatagaaa agtatgtcat ttatattcga cttcaccttt cagcacaaaa
      121 agacagtgaa gaaccaccat cccttcccaa cccccttgta ttgcattaag caattccagg
      181 tgttatgatt ttgggatcta tttccccttg gtttgcactg tactatcgca atcttgccat
      241 ctgtcacaag aaagaacaga tagagaacag tggcaaaatc atgttaaaaa gactgtcttg
      301 ggataacaaa gagaaaagtt aatggacatg gatttacaaa ttattaatga tttttcttgt
      361 catttcttga aaaatgaaag ctatgcaccc tgtctctttc cccaaacaga ttgcatttta
      421 ttcctctgca gtttgtccgt caggcttcac tctgacaaca taatccaaaa ctaatccaga
      481 gcattcagtt ttccttgttg gctctcatgc acactgctta gacaaatcct gctacctgtc
      541 agccctcctg tgtgtgccaa acaggctgcc aggttaaccc ctggggaagc cgaaagacct
      601 gctgacttaa cccctgcttc ccttcaaata atccactgta aatacatagg acgttaacag
      661 gctaactgtt ctaatcaggg ctggatccct taaaatctgt ttcatacaca acccttaaga
      721 actagggatc taagcatcac tgctgaaaga ggaaaggatt tcttgcaata atacaggcac
      781 taaataagca gatggataga acacactgaa aggttttaat cccctaaagg aagttgagaa
      841 aaaacacaca gcaattcaat tgcccacctc attgcttata aatttcccct aattgtcagg
      901 gcaagatcac aaataattta gggcaatgga agaaaatcta atgtagttac aactcaggtt
      961 ctcactgtca aacttttacc cactgcccct gtccacttcc atcaaattca acttaataac
     1021 aatccccttc tcagtgccct agggtttc
//
LOCUS       KCLA01002500             607 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40652upu ultra-conserved element locus uce-529,
            sequence.
ACCESSION   KCLA01002500
VERSION     KCLA01002500.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 607)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..607
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40652upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>607
                     /note="ultra-conserved element locus uce-529"
BASE COUNT          131 a          164 c          122 g          190 t
ORIGIN      
        1 ccttttctca gctcccaaca tggcggtaca cgcctgtgcc cgctatctgc ataagtcttt
       61 tgtgtattgc taatggagtg ctggaatcgt ggcggctccg agcagggaat acatgtgagc
      121 aacaatatgc tgacagaccc ctcggtggaa tctaatctgt tccagctcat gcactcctca
      181 gaaactattt aactttcatt aaactgtgtt tgatatcagc taaatagaat gcatacggca
      241 ccaatatagc tcatatggtc tcattcattc aatcacagca gtgcttttct cttaggttct
      301 ccccccactt gtgtcagtac ccggtgtagc cgggtaaata ggagaccttt gaagatatag
      361 ttagtactcg gatttcttta ttcttttgtg ccgctttctt ggtgttgaaa cagtgattca
      421 tgttcggctc agacagcctc cattaatttc atgtaatgca gcttttatct cgtagctggg
      481 acaactatct ccagcgctgt ctccccacag catctcgcac gcagcggtcc gccggcttcc
      541 caccccccca gcaccccttt ttctccctcc agcagctcat ttctgggtaa tttacttgtg
      601 ttttgtt
//
LOCUS       KCLA01002501             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40668upu ultra-conserved element locus uce-1048,
            sequence.
ACCESSION   KCLA01002501
VERSION     KCLA01002501.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40668upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-1048"
BASE COUNT          289 a          159 c          179 g          318 t
ORIGIN      
        1 ttgaaaatgt actcattaag ctaccctgca gggttatgtg attgctacct tttaaatgat
       61 tgttttgaaa gtagagaaat ggggaagaaa aatagcagta gttcttctga ttttttgctg
      121 aagggtgttc ttttcctgtc cggcacattc tagctgctat ggtaaccagt taacaatcag
      181 cagataaaat ttaggcattg ttatgtacat gaagtacaaa aaccaattat gtaaattctt
      241 ccgtgtacat tttccaaagt attaagggtt gtgctttctt ttgaaattca gatcagccgc
      301 atccaaaaag atttaaataa gacttttggt acaggtcatt tgcagcatgt atacaaatta
      361 gtttagataa atcatgcatt gtcctacaaa ctagtttttt ctggcttatt gtaatatagc
      421 tcctgaattt tttccagcag cataataaaa tggctaatca ggtgaatggt aatgcggtac
      481 agttaaaaga agaggaagaa ccaatggata cttccagtgt aactcacaca gaacactaca
      541 agacactgat agaggcaggc ctcccacaga aggtggcaga gagacttgat gaaatatttc
      601 agacaggtat aatatgcatt tcttgtttct gactggttat gaaagtgagg gcataccatt
      661 ttcaaatttt tatagattaa ggtttaaaaa atcattggtt ttgatctgtg tagctctgaa
      721 tgttttgcct ctttgacttc cctaaaggca agttgggttt gactgattgc ttgacacgtc
      781 ctcagtattg tatgtgatat cttagttatg tagggcacaa aacactggtt ttctagatgc
      841 tgtcaaatgt tcaagcatac aaaactgtac atttttctca atccaaatca tcattttgct
      901 tttacgtttc tactgtcaac tcctcacagt agttcttaaa cactc
//
LOCUS       KCLA01002502             313 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40684upu ultra-conserved element locus uce-5723,
            sequence.
ACCESSION   KCLA01002502
VERSION     KCLA01002502.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 313)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..313
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40684upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>313
                     /note="ultra-conserved element locus uce-5723"
BASE COUNT           51 a          120 c           94 g           48 t
ORIGIN      
        1 gacaccaaga tctgccgtcg tgccaccggc aggggccgct gcgacctgct gcaggcgctg
       61 cacgccaccg aattcgccag cctcaacggc gacgtgcggc tcctcacccc ggacgccgtg
      121 gagggctggt cggacctggt acactgcccc tcgcagcgcc tgctcgaccg cctggtccgc
      181 cgctacgccg agaccaagga ctcgggcagc ttcctgctgc gcaacctgaa ggattcagag
      241 cgcatgcagc tgctcattac cctcgccttc aacccggagc cgcttgtgct gcaggtaagc
      301 gcacccgagc ctg
//
LOCUS       KCLA01002503             786 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40715upu ultra-conserved element locus uce-2146,
            sequence.
ACCESSION   KCLA01002503
VERSION     KCLA01002503.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 786)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..786
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40715upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>786
                     /note="ultra-conserved element locus uce-2146"
BASE COUNT          232 a          164 c          197 g          193 t
ORIGIN      
        1 cctttttgtt ttagctgctg gaccagacca caatggatgg accactgaga gatgatgggt
       61 cagaccctaa atcacatctc tgtggggaac tgataccagt cctgcctatg ctgggtgagc
      121 tgagtgccag cagtcccagc aatcccattc cttgcttgca gtccatcttt tgggaatcac
      181 ttctgcttct gaggagcaca ataacctggc agctacctca aatcctgcct ggatgcactg
      241 agaaaagcta cagctccctc tgagatcaag tgggcagcag ccccttaaca ggaactggtc
      301 tgtgagctac caccacatgt ctaattaatg accctgccgg tcgcagctgg aagagctgag
      361 ctgggggtga ttaattaaat tagctggcag aggaaattac agtggaaaag ccaaagtttg
      421 attgctccat aattaaccgc agtgcaaata atatctgcat ctataacttc cagcgatgag
      481 atcagaagcc aattgaattt ggcactgatt gaagctgtaa atatcctgtg gtgaaaaatg
      541 ataggtttgt tctgaaggga aaacttacag aaatggacat ccagcggata cacaagagga
      601 gcaaggcaga caggaggaaa gagcactgga attagatctt gatttcagct gatttctgta
      661 gtcttctgga gaggtggctt cctcagtgtg gaagaggaag aaagatttaa aaaaacagct
      721 gtagctgctg aacacgagat ttctcatcag ggatttggtg aatctagaaa gtaaaggcca
      781 cttaga
//
LOCUS       KCLA01002504             743 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40731upu ultra-conserved element locus uce-3336,
            sequence.
ACCESSION   KCLA01002504
VERSION     KCLA01002504.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 743)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..743
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40731upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>743
                     /note="ultra-conserved element locus uce-3336"
BASE COUNT          236 a          146 c          139 g          222 t
ORIGIN      
        1 tttttccctt ttcagtggca agaaactagt gagcccatct gtacgtagtt ctaaaactga
       61 caaccatctt ccagaacctg tgctttaata caaattgcgt ttaacctgaa aaaaatataa
      121 actcctttct aaacagtggt ttatatcaca gaagaggtaa atccatgggc tgcaggcagt
      181 tgattctgct tttccaccta gctagggaaa ggcttttagt acctttaaat tttggtgcac
      241 acaccaccca tcattttctt cctctattta aaaggtaacc catatatctg tcgttttagg
      301 tttccaaaga ctcgtaactt aattccttca ggctattcat cagcacagta attaaactag
      361 caaatggatg taaataaagt gaaattggtt tcatgacaga tgagccgaag aggcctctga
      421 catgaaacaa gccaggacaa taattatttc tgcaccgggc tatatgagga actccatctg
      481 gatttattag gtgctgcaag ttatttgctg ggagcaggca agacaggagg actcacttta
      541 atttgacagg attttttttc tttttgcatc ctaagtaggt tacagaaata taaatctgga
      601 attaactttg gcaatacccg agaagcctct acccaatgta aaatatctgc agtgaaaata
      661 ggaggtagga gaaaggctta tcaaaccatt tcttgccaga ttataaatag gagaaaatca
      721 aggttaaaat cctgctctcc agc
//
LOCUS       KCLA01002505             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40746upu ultra-conserved element locus uce-451,
            sequence.
ACCESSION   KCLA01002505
VERSION     KCLA01002505.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40746upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-451"
BASE COUNT          208 a          249 c          150 g          212 t
ORIGIN      
        1 gatcttgcat tgcatgtttg tttgcagaag acgatcagta ggacaaagct gataatttat
       61 gcagaaacaa tctctcggca gttacaagtg cattcctagc catcaacaca acccggcaga
      121 ctaagcttga cacaggtcta attagcatgc agatatgtgt cgcctcattg gcaattcaaa
      181 ttgctttttt ataatgtacc tcaaattgtg ctactcaaac attgtatttg atttccaaag
      241 ccccctgggc atcccataat gtctctcttc atcctgggta cagaacattt attgaacaat
      301 ctgcttccac tctggctgcc cttttgaaaa cacccaaaca ttgcaactgt gggaccagtt
      361 ttgcctctcc atcagacagc aacttgttct tcgacggacg ccacgtctgc aggcttcgtg
      421 gtgatacctt gcgactcctg ctcccacgat agctgttcta tctagggctt cgctcctgtg
      481 ccactcattt aaaaaggggg aggatgtcta cggagcacac attaatatgc agcacataac
      541 cacgtctctg aatgccagcc ttccattctt cattaaacaa aatggctgga ttgcggtgat
      601 tgttttcccc tccacacacg cgcgcaggca cacacacacc tcgcacgcag gcacataccc
      661 acacacccca cacacacact ccggctttct ccctcttcct ccttcacaca cacacatgca
      721 cctttccccc acacacacac acactgatac acacgcgtca tcccctgcca tcacgtgtcg
      781 gtcgccatgc ggtgagttac gtgcaaaaag ttgcctgcg
//
LOCUS       KCLA01002506             820 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40762upu ultra-conserved element locus uce-5385,
            sequence.
ACCESSION   KCLA01002506
VERSION     KCLA01002506.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 820)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..820
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40762upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>820
                     /note="ultra-conserved element locus uce-5385"
BASE COUNT          248 a          180 c          145 g          247 t
ORIGIN      
        1 aattaaaaca caattgcagc aagatccttc tcaagtcagc atcatgtatt tgcacaaagg
       61 ccacaaggag ctctattttt taattttttt tattatttta acttcgctac ttcctcagag
      121 ttaatctgtt atgaaaaatt acttccctta tttattttta aataacggga gtacagagac
      181 tcccacacca cagccctgtg cggagaactg gctgggtatt tcatcacagc gctgagagcc
      241 tgaacgtctg ctaacaggca gttttccagc tcactggcac aggcacaagt gaaagcagca
      301 cattcatttt gtgcaatttg ctttaccttc ccacatggag ttggtgcatg taaaaggctg
      361 ttaagtacta aattattcct tatcaaatca ccatcatctg gagtcatgat caacactaat
      421 taaattactt tcactgaaca cggctccagc ctgctgcctc ggctgtgagg tacattttat
      481 tttgcttact gtacagccct agcaaggtac agggcacagt actagaaggc atctgtgctg
      541 tagttttaat taaagttacc tcacctacct cctagcttta taagcgaggg taaagtgtat
      601 caaatcaagt aggttaacac cttcatttca tttagggaag gcattactgt ccaaagtgat
      661 attatattag atccttatct taactatgac cagaaaggta atgtaaattt aaagccttcc
      721 tcgggcagtc ccctgacaca gtcaccatgc taaaagttat ctgtaactcc ttaagtgtac
      781 acttttagag gcagaaagca aaaaaccctt agaaaaatac
//
LOCUS       KCLA01002507             783 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40777upu ultra-conserved element locus uce-7724,
            sequence.
ACCESSION   KCLA01002507
VERSION     KCLA01002507.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 783)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..783
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40777upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>783
                     /note="ultra-conserved element locus uce-7724"
BASE COUNT          259 a          142 c          183 g          199 t
ORIGIN      
        1 gtagtgaaga agcttcatct gttacccttt aacagcaata gaagaggaaa aaacagttta
       61 tgcacccttt ccatcctgac agatgtgaca atagctggaa acgctgcgcc tgccaagagc
      121 ttttatcaag tatgttataa caactagtaa taagtgtaaa taataaatgg ccacgatctt
      181 atgggaaacg gcggcaatac gaaacaattt ttggtgcttg ctgatgggag tctgctagtc
      241 ttggaattcc ctggcttccc agtagagttt tggcctgaca ataaacaaca gtttaatact
      301 ttatctaatc ccagccagga ggtaagttca acagcaagct tttgcagatg ttcacatcca
      361 ataatctatc cataattgat gaaacaggga ggtcagatgt aatggttgct actattccag
      421 caacaaataa atggttattg acaaaacaag gcagtgtggc gctgagtgct gagcagtgac
      481 aagcatgaaa cagcgctgag acagaaggag tgatgtgaat gcagcccttc atcttgagaa
      541 tttctcaatg tgatgtgcag cacgagggcc actctgacac ataagcagat ggaggtgact
      601 tgtaaaggaa aaatgagatt ctgcgaatac ataaaagaca aagagacaga agcaaacaag
      661 gagaaaggag tggacaagcc tggaaattta ggtaagtgca ataatgtaaa ttgttcagaa
      721 atgtttttct acagcagcac tgtgatccag atgtctggat ggcttttatc acactgctgt
      781 gtc
//
LOCUS       KCLA01002508             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40793upu ultra-conserved element locus uce-1062,
            sequence.
ACCESSION   KCLA01002508
VERSION     KCLA01002508.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40793upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-1062"
BASE COUNT          212 a          204 c          153 g          194 t
ORIGIN      
        1 aagcagggag aaagggaaat gaacccagaa agatgcagcc ttgatgtcaa ttcactaaag
       61 aatatttatt gtcctctcat gcgtcttgtt tgctctgcta acaaatacaa gtatttcgag
      121 agaatgagtc tccctttacc actgctgtct ctcccatgcc cttcctctgt ctcgctagct
      181 ctgtctctgc ctctctgata ccaactctga caatccgtgc ggttctgatg gaaaattcat
      241 tagtcgtccc tctttttttt ccttccccat tttcccagtc agcttcgcgc ctgatctgtc
      301 agcctcttcc atcctgatta tctggagacg ccaatttcaa agagacatct taatagtgat
      361 gtcaacgaat taattagatg tgttaatgag ctaaaagcaa cccaaattaa attaatgcag
      421 taataagcac agacagcaaa attagctcca atttctgtaa atgattctga actgtacaca
      481 acatctcatc ctgctagaac attaccatcc cccaaagcta atcaagaact ccagtgcaat
      541 taactgctta attacaaaac acacacacag ctcatagatc cagcagcagg aggggtgtgc
      601 cgggctgccg agcgaacagg gagattctct gcaacaaaca cagcgtggtg gccctgcagg
      661 agagcctgtg ccccccaccc aaatcaatgc cctggctact caaatggggt gaccctgagc
      721 taggacagga ggagggtggc cgggtcccca ggtgcgccca cat
//
LOCUS       KCLA01002509             296 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40809upu ultra-conserved element locus uce-3312,
            sequence.
ACCESSION   KCLA01002509
VERSION     KCLA01002509.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 296)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..296
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40809upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>296
                     /note="ultra-conserved element locus uce-3312"
BASE COUNT           64 a           90 c           67 g           75 t
ORIGIN      
        1 atcggggctg gctgtgcctg accccgaggg ccctcctgtc aatcactgcc tccccatccc
       61 ttgctctctt tcacaccagg cagctgtacc catcgctgtc aaccaggtaa caaccagcaa
      121 acaatagggg cctgaatgcc tggtctagac actcttttag ccacttattt gctgctcttg
      181 gcagctgttg aagcataaat aagcagtttg taatcagaaa gctgacatca ttgcagctca
      241 gctgagaggg ggaattgttg ctgtgcactg agctgctttt ccccgacacc cccctt
//
LOCUS       KCLA01002510             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40825upu ultra-conserved element locus uce-7494,
            sequence.
ACCESSION   KCLA01002510
VERSION     KCLA01002510.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40825upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-7494"
BASE COUNT          150 a           69 c           93 g          145 t
ORIGIN      
        1 taatatgatc cagttttgaa atgatacatt gtttagaacc tgactgaaat tctttgtaga
       61 aactatgtga tcataggggt cctcaggtgc actgaggcac tgaaaagcta gttttcactg
      121 acacataggc ctttttatca tcaggatgag gtagtggtcg tattttaatt aaaatgtcag
      181 aacaaatact gttggagtta ttgaaaatga atcaccagat aaagtgagca ctgggccatg
      241 gcaggtcaaa gaggcaaagt cacctggaga agaggactcc attcattttc ctgcctaaat
      301 gaggaagaag taacttttat gagcagtgtg aacttttaaa tatattaaag agcatcttgc
      361 cttgtattaa ggctcagact ttcacaggct gatgaattta atttatatat caaactgttc
      421 aatatggtta gtacctattt tttaaaaaat atttgac
//
LOCUS       KCLA01002511            1057 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40839upu ultra-conserved element locus uce-2104,
            sequence.
ACCESSION   KCLA01002511
VERSION     KCLA01002511.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40839upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1057
                     /note="ultra-conserved element locus uce-2104"
BASE COUNT          263 a          259 c          200 g          335 t
ORIGIN      
        1 tgcaacttcc atggtagctt tcaacatatt tggatacgcc taactcttgg taccaaagca
       61 gatatcaata atggagtgta acttgcagtg atggtaccag tgcttttgca aagatatgga
      121 atcctctgta ttttgtttta ttttgaggat aatttcagac tttttcccca tcttgcagtt
      181 atttatcatc accttaatgc aagactgaca ttgggctgca cagctccaat tatgcaccat
      241 cacaatgtta gatgttatga tatgagacat aatttatttc tccaataatt catttcttca
      301 gtgtgtgaag attttgcagg cttctgactt tccaggctgc aaattctctc tctctctttc
      361 tcctattgac cacttgttaa atctttttgt ttgtttccca cctttcccct gggacccaca
      421 gacagacagc cttgccagat tcattttctg atcaaagctg tttgatttgg tcaattttgc
      481 cacattggag acgttctcta ttacagagat aaatagcctt gggctaactg tcaacgaaaa
      541 cttgtaagct aataaattat tccaatttct tcctgcggat ttctctggag acagccctag
      601 gaaatacact ttttgattag taaatttctc tgtgtgtgtg tctggacatt caaatgtgtc
      661 gactttgatt agcaccattg cttttcaagt agatgctggc tgaggggctg tcagttgccg
      721 gcagccctga tgcataatgc atcaactggg cccggaaaca ggagccttac ccaaggctag
      781 aaaggcggga aaattgcccc aacagccctt tgcaccatgg gagcaatcca agttgcaaag
      841 actttgtcat ctgcagatac aaggccttgg agatcaaagg agcctcagga gagagaaacc
      901 agtaggaaca gagaagggca aggagagagg cgggcaactt gctgcctccc ccttcacttc
      961 cacacctttc actatcccca taaaatggct tcctccccct ccttttcttc ctcctcctct
     1021 tcttcttctt cctccccttc ctcctcattc tcttcct
//
LOCUS       KCLA01002512             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40854upu ultra-conserved element locus uce-6998,
            sequence.
ACCESSION   KCLA01002512
VERSION     KCLA01002512.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40854upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-6998"
BASE COUNT          217 a          174 c          133 g          191 t
ORIGIN      
        1 ttaaagaact gcgctttatt catccatatt tcaaaaccat ctttgctctt tctctctgct
       61 gtactaacca gataataact cctcattttt aagttgccaa cgtggcatat gcggcgctcg
      121 cctttcaaca aaaaaattac aaattagaga gcagggatga ttaaaacatg aacgggacgc
      181 agtgcatctg tcacagcacc ctctcgaagg gaacaacctg tctaacatct ctgtaaggag
      241 cgtagtcggt ttcgagaggt ctaaagtcaa acgcgttgcc ttagacagtc gcttcggagc
      301 aaaccacgga gctcttccct tggtaattta aatgactgac cattcaattt acgagcattc
      361 ccagcaataa aatccagcct gaacttaata atagcacatt ttatgtgaca acgatgacaa
      421 ttacaatcta tagttgccgc agacaccctt tggtctaggg aaaaatgaca gtattaatta
      481 cacacacttg ccattcgtca gccttaactt ggcaggcgat tgagctccga accatcttca
      541 gcttgacttc tacattttcc attttctaat ccactggaac gaggataatt agaacagaga
      601 aaaatgagag gcttgcactt atttaaagat gtaccaagcc tctacaactt gttagcggca
      661 caggcagtga caccgcagtc ccattaacac cgtgccactc cagtcaagga tctgt
//
LOCUS       KCLA01002513            1113 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40869upu ultra-conserved element locus uce-1349,
            sequence.
ACCESSION   KCLA01002513
VERSION     KCLA01002513.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40869upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1113
                     /note="ultra-conserved element locus uce-1349"
BASE COUNT          294 a          273 c          248 g          298 t
ORIGIN      
        1 acaccccagt gctgtcagac aaaccctgcc ttgcccacgt cacatatgga tccttttccc
       61 cccttaacac tcaaaggaac ctgtggtaaa acagatggct tagacgacac atgtctgtga
      121 cagggaggag ccgccagccc catctccaag agactgatcc tttccccact ctgctttatt
      181 taaaacatga gtgctgtccc ctctaccagc aggtcttgtc tgatgtgaca ttcgattgag
      241 tgacagccct gtcagctccc agctcagccc tctccgctgc ctcatgatgc tcttgaccac
      301 ctctctgtgc ctgacgggaa ggggagaaaa attcttccac atgctgtgtt agcaggaatg
      361 tggagagcac agggttaaac aactcagggt gctgagtctt tgtggggatg tgtgcacgta
      421 tagatacata tatgggttta tatatagata cacacacaca cacaccttgg tttggctgta
      481 ggacctcgtg cccgcaggcc acagtcacat tatcatctgg aaattggata acgacagcac
      541 aatgacaaat ccaggttgcc tgcaataagg tgctaatccc tttgctttaa tatcggagca
      601 gcgtgtaatg atgtttggac atcactccag tttactgacg accccactgg ggccagcaat
      661 agaagcgtac aactgtctaa caagccatca ggtgaccgcc gtcgtcaaag caacggggga
      721 tgcaatctaa tcttccctcc atcccttcca gctcccaata aggcccagat tatagaagcg
      781 gcccatcaat gcttggtaac tcgaatcaat taacgttaat tcgcacaatg ctatgatgta
      841 ttgtgatcac tttcatttcg gagaaggggg aagaaattgc tataattcac ctaaaatgag
      901 gttgtctatg gtgctgaggt attaattggg tgtccatatt aaatggaaaa ggagcacggt
      961 agtgaaggca aagtggatga gtgactctct tggctgctat tgacctatca gaagaagaca
     1021 gtgccctttt cctttgcttt tatctattac agttttccct attgcgtgtc aagttgatgt
     1081 attataaaaa attcatttgg tgacctttca ccc
//
LOCUS       KCLA01002514            1174 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40885upu ultra-conserved element locus uce-2611,
            sequence.
ACCESSION   KCLA01002514
VERSION     KCLA01002514.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1174)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1174
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40885upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1174
                     /note="ultra-conserved element locus uce-2611"
BASE COUNT          326 a          272 c          236 g          340 t
ORIGIN      
        1 gattttgtct taattacaat ttttcaaaaa agaagctaaa gcacagattt atttttttag
       61 gagattgaga ataacgatat catcaaaata taaatttatt ttcccttctt ccatatcaga
      121 cttttaaaat tgaaagcaat gctctgtatg tgctttgtta aattaaccaa gtgtgcaaag
      181 tttagtgcat tttagctata caggggatac ttggcatctg ggggattttc ataactgaag
      241 acttgtgctg tatcacaaca aattaagcgt aattaaacgc tctgttcagt gtctattgtt
      301 aattgcagca gctaatttga tgcttagtta gtgttgtgtt ctgaacggag aattcttcag
      361 ttaagactgc ttgcttgtag ccctaaactt cattcttgtt tgacagcttt tagctcattt
      421 attacttctg ttaaacggtc agaaattccc ttgccaaggc agtactttga ggtccttcac
      481 tttcaccaag tcagacacta aatcataggg gacaattatc agcaaatgct ctccgacagg
      541 ccctaagcct gctgaggtaa tgcagctgac aaactttgat gcgccatgcc cgtgcacatt
      601 atgttcacgt agtgtgtaca tctgggcacc ctttatggcg atgcagcaaa cagccaatca
      661 tttattccac tctaattagc acacatgtaa atcctcacca atcaaaccac tcacagggtt
      721 accgttgtgg cagccataca gcaggctggc aggacatggg aagaaagtac aagaagcaac
      781 tattgggttt gatttgaacc tgccgtcacg ccacggcagg tccccccagt cctgactgta
      841 accagctctc cccttcacaa cccatcatcg agctgcataa gaaaaaggtc atcgggcaga
      901 ctgccgacca gccaagatgc tttgattctt tacaggcttt gggagcacac ctgaagcgac
      961 acacgtctcc gatagcttac agcgcaatag ctgtcgtggg caaaagtcag gcgtagcttt
     1021 aaagcatgcg gcacagcatg gagtacacgt taccttaaag aagcactgtc cacctcaata
     1081 ttttagaccc cgttatgtcg ccaggaaact atctgccagg tgtcagcatc tcttttcttc
     1141 ccacgagccc aggtgcctct gcagtgtttt attt
//
LOCUS       KCLA01002515             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40901upu ultra-conserved element locus uce-1748,
            sequence.
ACCESSION   KCLA01002515
VERSION     KCLA01002515.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40901upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-1748"
BASE COUNT          296 a          175 c          169 g          321 t
ORIGIN      
        1 tagcctcctt ctcaaatgaa cagcacccac taacaagcca tttgttactg ttccttacat
       61 atggaacctt ttcactggca ttgcttcaaa tgccctgtgt ccctcggact ttcataaaat
      121 cacaaggtgt caaaaaggaa tgtttataaa cttatttgca ttactcatga tttgtgaccg
      181 tgcaagagag aagtcatggc catatttagt gtgggggagt agcatggggg aaactgggag
      241 gaggcgttat tattggctca attccacaca taccaaatgt gaatacttat gttcttccca
      301 caaaacatta atttcttcac atactgtaga ctttattctt ttaccgtgtt ccagatagca
      361 gacagctctt gtttttcact tatgtttccc tcttaacaac agtcattaat gtactgatat
      421 gctgtctatc agaaccacat catcttgatt agagctgtta tcctaatcaa aaggctgata
      481 attaagacta tccatctgta gagttccaag tgctaagatg agctgaagat cctaattaag
      541 attatttagg tgttacttaa atgccatcat ttgattcagc taatcatacc agcaggtaca
      601 ttagatttgc attaatgttc tgctgaagcc agcagctctt taaacagatc aaaaatgtag
      661 attacaggca ccatttttaa acatccttat atcaaaataa cactgaaaca atacattaaa
      721 gtaaatggaa tattggaaaa aagcaatgtt gatgtctctc agcctgtttt attataatca
      781 gtaatgtatt taaaataagt agttgatgta ttttgtgtga atgggagctc catatgtaag
      841 gtttcacttc tgctttgaac atagactgta tggacgtctt ctaatttgat gtgaattttt
      901 ctagcctaaa tgaaatggca cactgtgtgg gagttcatta gttcctgctg ataaattatt
      961 a
//
LOCUS       KCLA01002516            1011 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40917upu ultra-conserved element locus uce-6754,
            sequence.
ACCESSION   KCLA01002516
VERSION     KCLA01002516.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1011)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1011)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1011
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40917upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1011
                     /note="ultra-conserved element locus uce-6754"
BASE COUNT          280 a          220 c          223 g          288 t
ORIGIN      
        1 tttgctcatc tgcagaggct ctccattatc ctattcctgg ttgtgttcat cagctgagct
       61 ggctgcacaa ggcaacttta ggaaatttta tttcacctgc cttacaacac tctgcctctg
      121 cccccgagaa gatcagaaat gttttccttt aattgctgag gataaattac agcagcatca
      181 ggctagcatc ctgccttctc cctgcgtgtc tcctgctgct tggtcagcac aggtccacaa
      241 ttccattttt aaatcaaatt atgcttgtga taatattgtc ttgagcttac agttgctgac
      301 atggatattg acaaaggctt agccagtatt ttaataagaa aacaaaatac aggaaatact
      361 ctagagtttc caggtggatc attaacaaga cgccttggag ggctgagact gccagccagc
      421 aaggggaatg catcacagtt cgtcatacaa cttaaacttc ttttgacatc tagttatgtc
      481 gaaatgtgac tgatcaccta ggggtccagg ctcctgtgag ggaaaagttc actgacagac
      541 agcgaacgaa gctgatctta aatgagaatc aagagaaagc agcattccag cgtctgacag
      601 tctgcagctg ctacctgggt ctgcctaacg aagacgagcc tgctctgctg aacagttata
      661 ttagcatctg tatgcttctg tctcattatc acacatctgc ccacctttat tcgaatgaag
      721 cttctgatct gacagctcag gcattgtcag tgaatagata ttatgggagc tgggtacagc
      781 agcttagggt gttagctttt attttctaaa gactgttgta cagtttgaca gtacaatgcc
      841 aaggaggcaa agaagataat taacatattg ggcagtttct aaacaaagct gagacagtta
      901 tactggcaaa agtgctgcta cctgagcagt attgtttgtg ctctagaaac atcaaaggct
      961 tgtgaagtcc acctttgagt gagagcagat acagtgtggt ccccatgctg c
//
LOCUS       KCLA01002517             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40933upu ultra-conserved element locus uce-6484,
            sequence.
ACCESSION   KCLA01002517
VERSION     KCLA01002517.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40933upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-6484"
BASE COUNT          263 a          127 c          137 g          242 t
ORIGIN      
        1 aagactcaag aactgtttgg aataaaaatt tgaacactgg aaaaaaagaa cctcctgctt
       61 caatcgaaca gctttcattg acactttttt ggtgtaatta taactgactg cttttggcaa
      121 acataaagac tttttgaaac agttttttaa gtgtatgctt tttcttgtag tcaataaaat
      181 ataaatagca ttttcatagt gataaatgac aagtagtaca gtgttctatg atcatggttc
      241 caggatttta tttcttttag ctttgtatac attaattaag tatacacaat caggactgag
      301 tgcagagaca gctaaataaa caaatgacac tgtagaaagg tctttctgca tactaatcat
      361 atcctacatc tgcaagcaaa agctctataa atcgatttgc tctttcacat caaaagacaa
      421 acagcgaggc aagtcagcag ttcctttgtc aaagtcacag agattgctgt tcttcacaaa
      481 tgcatttcta cagagctgaa ttcaaccatt tgatgattag cattattggc aactcttcaa
      541 agaagattca tcaagtaatt tgcaattgga ttggttgcca tttttgtgat tctaccccat
      601 gaaattgaac aaaaaatgat tgacatttga attcttgctt ggaggacaaa gtgaactagc
      661 ataagaaaaa gaagcaatca gattcccaag tggttgggaa gctgctgtga tgtctctggt
      721 gattcccaga tgaactggat cagataggtc taaaattaaa tgaattagc
//
LOCUS       KCLA01002518             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40948upu ultra-conserved element locus uce-5307,
            sequence.
ACCESSION   KCLA01002518
VERSION     KCLA01002518.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40948upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-5307"
BASE COUNT          203 a          104 c          120 g          217 t
ORIGIN      
        1 gttcctgcca gaaaggtgag aatgttaggt acagtgtaag atccctatgg tctcaatgct
       61 actttatccg tatatacaca catatgttcc tgctccataa tatattgctc tcattgaaga
      121 aagtgaactc tgagcaccta tcaggtctat cctgtatgat aagttgcttc aaagtcgtat
      181 tctggttgca gttgccaata gagtataggt ttatgttcat acaatcacca tgtttgcatt
      241 gacctgaaat aataattagt caaaggaaac ctggtagtgg aaggggatga taacccttgc
      301 aaacctataa tttatcattt gataggcaca gttgtgaatg taagtaatag aaacctgaag
      361 atagtacaag cttaatatca aagctaatga tttattctgt gttaatgact ttctgctagg
      421 gcataaaaga ctgctcataa tggactctca gctctgcatt cagttgcgga tgctaatggg
      481 ataatcttac ccaaaattaa gcttttggaa gtaaatcata gtgttatttt ttcaagttaa
      541 ctcttgaaaa tatattgaca aaatgttatt aaagaattgc ttgtcatctt tataggaaaa
      601 tagaagggta ctcttttttt ctccatgaac agttttctta attg
//
LOCUS       KCLA01002519             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40964upu ultra-conserved element locus uce-2817,
            sequence.
ACCESSION   KCLA01002519
VERSION     KCLA01002519.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40964upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-2817"
BASE COUNT          223 a          118 c          141 g          234 t
ORIGIN      
        1 tgttctaacc tccattagga atattataga gccgcagtct gcatctatat tggttattta
       61 acagtgatag tgcatattgt aattgatcta gataaagacg ttagcataaa gcgtggcaga
      121 tgtgcttaaa ccttatgtcc ctatgtagtc atattggcca atgatggctt aatttttctt
      181 ggagataaaa tgtgcggctc cacgttgtat cttgatgtat cttgtaaaaa taaattcctg
      241 tgcatcttta tttaaaggga cagaggtttt gtcgaaggat acggagaatt tactgctaaa
      301 agtgaaaacc atctcggagt gaataattct gctgaatttg tgactgcgat tgtttacaga
      361 tttcattctc catttgctcc caaagaatac acttaaacac tcaatcaatg aataacctac
      421 agcagtttgt tgtagattca ataatgggga atggtgcatt gtacggggat agtcagatat
      481 acccataggg agtgtcagtg gtcaaaatgc ttccattgcc agaaggtagt ctgaaaatgg
      541 tctagaaatt caatacagca ttgaccccac attgtataca tgatctgcag tcaggttctc
      601 aagcatattt gaagttttaa atacagccat tttaactcta ggatacatag tatatacaag
      661 tacctatttt agtttcaaac tatttatcat cccataaaga tgtaagttta ggaggt
//
LOCUS       KCLA01002520             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40980upu ultra-conserved element locus uce-2432,
            sequence.
ACCESSION   KCLA01002520
VERSION     KCLA01002520.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40980upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-2432"
BASE COUNT          243 a          176 c          181 g          247 t
ORIGIN      
        1 tggactgtga ggattctgtg attctatgta aaatagaaca ggacttagag gaaaatttag
       61 aagagtaagt atgagggtgt gcagaagttg ggggatgccc ggattgcagc tggatgtcaa
      121 agacaaagcg tttccttgaa aaaaaaagcc tgtgctagga cacagcaact gatgtgggtg
      181 ccaaactgtt cagatttaac attcgctttt tcttttagac atggcaaact gaattgcaga
      241 tgggttacca attgatccac aaaccattac ggagcgcctg gaaaaggcac gtgaacagga
      301 ttagtatctc ctgaaaacct ctgccgctcc tggagctcgg tgttgagcaa gagaggtgct
      361 ttgctctcga aaacctaaca agccgttttg caatgtcacc aatttttttc aatcatccaa
      421 atacccccaa ttcaattaaa ctcataaact tcctacccac agttctcccg gataagcagc
      481 tccatttaaa agtgaatgcg gacgagcttc tgctgtccgt gtgaaatatt gttcaatcaa
      541 cagccaaagt tttacttgtc agttttgata tatcccataa tagctgtagg ttgttttgca
      601 atgtccaatg ttctgtgaag atgggctttt catattcttt attggttttt tctgacaaaa
      661 tgttgcctgg acttttgcag ttttgtgaaa tgaaacaaca gtaaaaacaa tcttgaattt
      721 aaccctccta gccccagctg gacggcagag aagcagcttt cccaggctta tggctacttt
      781 tggccgggct ataatgagtt cctgctcatt gatcccctat aagcatcctc aatgattgaa
      841 cataacc
//
LOCUS       KCLA01002521             795 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 40996upu ultra-conserved element locus uce-7410,
            sequence.
ACCESSION   KCLA01002521
VERSION     KCLA01002521.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 795)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..795
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="40996upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>795
                     /note="ultra-conserved element locus uce-7410"
BASE COUNT          229 a          174 c          167 g          225 t
ORIGIN      
        1 cactggttag atgtttctta atgtagactt caccagaaca tgagagatcc tagtgccatg
       61 aatcatttgc tgcagttcct tcaaattctg tggttttcta tgtccttatc aacccaaagc
      121 ctcatctaca gccttgctac agacgtccat aggccttgtc cacctggtgc cctcactctg
      181 tatgaagcca tactgcactt atttttcccc ccaggtctgc tggatcaaac cactgcaagc
      241 tcacatttcc tcttagcctt tcttgttgct atatcccagg cagtagcaga aataatcatt
      301 gcaggatcaa aacttgcttt ctgttatcca gctttagttg atgatgatgt atgaaggaga
      361 gagaaaagag acagcttgat tttcgtaggt taggtgttga ccctgctggg cttagtgtag
      421 catgaaacta gttttgacta gtaaactgaa taaataagcc aggaaagcag tagaagggca
      481 atatacatgc aacactaagg caccattttt gcaaaatgac tctgattcat cagagggcta
      541 agctgatgcc cagtgcatta aaaatcccgt gaacaggagc tcagggaaat atttcaattc
      601 ataatcattt tgcatgaaac agttttctct cctgtttcaa aatgtgatac tatttggcag
      661 agcagctcag ggcaaaaacc ataggacatg gtgctgccag tcagcccaag ggatccagca
      721 agaagatgaa caaaggtctc tctgctgtat tgtcatgtca gcacgagcca agaaaatcag
      781 tagcattgta ggtgt
//
LOCUS       KCLA01002522             389 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41012upu ultra-conserved element locus uce-5779,
            sequence.
ACCESSION   KCLA01002522
VERSION     KCLA01002522.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 389)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..389
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41012upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>389
                     /note="ultra-conserved element locus uce-5779"
BASE COUNT          119 a           68 c           75 g          127 t
ORIGIN      
        1 atcaagtaag ttgactgaag atttttatgt tgtgtccatc agtgagtctc aatgtgtggt
       61 tccttcatcc atgtttatta gaaaaaacct ccaagctgcg tataaatcat aaaagcatga
      121 ctaattgcat ggtaacagga gaaatgcttt ctctgtctct ggggtgaagc ctgcatgtct
      181 gtgttttagc ttgggaagta atacagggat atttaaactc cttgggattt aaaaaccatg
      241 tcattatgag aatgaggtca ctgcaatatt ttgtatgtct aaaaccttgc aatgtttaaa
      301 atgttttcca tgcgacaaag gagtattatg cactttagaa cccaatgata actttacacg
      361 tttccactaa tgacaaaacc tcaccttgg
//
LOCUS       KCLA01002523             212 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41027upu ultra-conserved element locus uce-117,
            sequence.
ACCESSION   KCLA01002523
VERSION     KCLA01002523.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 212)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 212)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41027upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>212
                     /note="ultra-conserved element locus uce-117"
BASE COUNT           76 a           36 c           35 g           65 t
ORIGIN      
        1 caaatattaa actggaaaat gtatagtcat ttcagcttaa tgtaatcctc tttctgtaaa
       61 cacccaagat gatttttttt tcaaccagaa cagtcctgac atctcataag cctaagggtg
      121 aatagcaaga gattgttttt gatagttata aatattcaaa agacatgcgg accatctgct
      181 ttcataatac aggtaaagca agactgaaat gg
//
LOCUS       KCLA01002524             970 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41042upu ultra-conserved element locus uce-2444,
            sequence.
ACCESSION   KCLA01002524
VERSION     KCLA01002524.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41042upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>970
                     /note="ultra-conserved element locus uce-2444"
BASE COUNT          270 a          209 c          226 g          265 t
ORIGIN      
        1 ggtgcctgca aagaaatgtg tcatttccct gtgctgaaaa agagggagaa aacagaacaa
       61 gaggaggagc cctgtaatgg ccaaagagaa gtgtttccgc acgggaatgt tgggaaaatg
      121 attctgatcc tccaagttta ttttagttca gcacatctgt ataaatgcaa tttacctcga
      181 ggcgtaattg gctctctggt tgggctcgct gtcctccgtg aggaagccac cgctgtagct
      241 ttcatatgga aagggaatca ggggtgcttt gtttacattg ctaccattta taaaacattt
      301 aaagcaacca ttctgctgaa taaacattca aggataagcg tatcgcttaa acttcttaag
      361 actaaacttt ccaaaccatt tcctgccaga gggacctagc agtaaaattg caaactctgt
      421 gctccaagat gagataggca gaattagatt aagcagctta ctgttgacat gtctattgat
      481 ctgggttcag cgccgtttcc tgtctctgct agcggttaga ttgctgtgta caatagcaca
      541 gtggcctggt ttatgtgaaa ttggggaact cctagcatca attactccag gaaggcagtg
      601 gcactgggag ataaggttaa gccgctcaca gtgtttaaga ctgctgaaac ccaagcaaca
      661 tatttgctgg ttaaattgct gcttataaat ttgacagcat tccatttgtg ttgttgattc
      721 cccccagcct ccaaagagcg atcatcctgt actgttctct gcaggtagcg gtgccgttct
      781 cgttataaac acacattgtt cgtcggtcct cccttcccat cagccctttg ttagaagctc
      841 ctgaatatct gaatagaaaa tagttagaca ggagggagga gggcaggaag gggtagagaa
      901 ccgacccata ataacctaag taaatcttca cccttgcact gattccggca cagcatcaca
      961 ggaaggcttt
//
LOCUS       KCLA01002525             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41058upu ultra-conserved element locus uce-6169,
            sequence.
ACCESSION   KCLA01002525
VERSION     KCLA01002525.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41058upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-6169"
BASE COUNT          223 a          143 c          177 g          209 t
ORIGIN      
        1 tggcttgcct gagtgttatg actgccatag agtatcagtt gtattgcaaa agggtttgac
       61 agcagccaga caggtttcct ctgtggaacc gtcacacagc cggcatctga tctgctactg
      121 cttgacattc accgtgatgt ttctccaaag ccagtccaaa ggctgtaatg gccaagattt
      181 atcttggtaa ttttggactt ggcccatttt ttagccttca gatatgctgc tggtcatagc
      241 tttccaatgg gacatgagcc acagactctc ccagtcattg tagcagagtt attttgctgc
      301 tcagctatgc agaagcagca gggctttatg ctaattaata aatcatcaac acatttgtgg
      361 tgtgaaaaat gaaatattta tgcttgccag agtaatattt ctgtcttgca gccccatgct
      421 ctgttgatgc ctgatggagg atgaagtaaa taccagctgg tgtagaatga gcagaatata
      481 attacttcat acaaagttaa ctgaatatca aaaacagaag ttggagaagc tggtatagga
      541 aaaaatacat acatgcctaa aaggcaagac acaggcagta cacgaagaga acagtcaccc
      601 aattagtgcc gtggggttag ataacctgca ggatctgtgt tgtgtacaaa tgtatcacat
      661 taaggttttt tgcagagcag ttagtgacca gctggagtaa agggccagaa gggaagcaaa
      721 gaatgcccta atgttctgat tggttatcat ga
//
LOCUS       KCLA01002526             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41073upu ultra-conserved element locus uce-8032,
            sequence.
ACCESSION   KCLA01002526
VERSION     KCLA01002526.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41073upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-8032"
BASE COUNT          188 a          220 c          184 g          230 t
ORIGIN      
        1 ggtacacttc aacatagaaa acacaagact tgtgagacac aacgtgcctt cacagttcaa
       61 agcttcattc accggcttca aacacgcttt ggtcagcccg ctttgcgctg aagggtacca
      121 cactgtgaac agctgcatgt ccagcaggga ctcaggaggg acagcgggaa acacacacgt
      181 ggattgttct gaaacgacaa ggttacgcat ggcctaagga actctttgtc tagactaggc
      241 tacacactgg ggtaggtacc tcttctttat cagcctcaat ttcctggtac aacaatccat
      301 atctccggtt agcaatttca tcttcagata aatctgagtt gttggtctca ttgtctttag
      361 gactagttga actctcggtg ctagcatttc tggaatttcc catgtgaaac agagtcaagg
      421 gtctagctat ctccttgctc gctccaggat tgctaatgcc cgcttgctcc ccaggcaagc
      481 cttgtttcac tggtgcctcc tgactcttag tgcttgtgct tgtacctact tctgcccagc
      541 agctctcagt ccctcctagg tcttgtgcag accatttatt gctaatacct aaccaaatgt
      601 tttccgagtt accttcctgt gagtcttgct ggttggggaa aaagggccaa ttatccagtc
      661 cattggattg gccatctgac tgattagaaa agccccagga atcattagtg actgttggat
      721 cccagtttgc cagccagggg tctgtttcca gggcttcagg aacaccaccg ctactaggat
      781 gctcttcagc cactgctgct gctgccctac ctgtcacctg gt
//
LOCUS       KCLA01002527             629 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41088upu ultra-conserved element locus uce-4724,
            sequence.
ACCESSION   KCLA01002527
VERSION     KCLA01002527.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 629)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..629
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41088upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>629
                     /note="ultra-conserved element locus uce-4724"
BASE COUNT          220 a          102 c           98 g          209 t
ORIGIN      
        1 caggaagtag ttataaacta cttcatacgt tagaaataaa aagtactttg gtattattat
       61 tctattggta gagtttttaa tagaaaaaaa tacatatctt taaaagccaa aatgaccagt
      121 gaaattgggt tgtacatcat tttctgggaa aaaggaaaaa cagcctcgac aggtgtaatt
      181 tatcattttt ctgatttaat accaaagaaa tatattaaaa taataaaaag aatcctgaaa
      241 tcctcaaaat ttgtagtgat aaatagccct ccctgtcttt attgcattat gcctactaac
      301 agaaatattg catggtggat tttgccagac aaggacgatt attttccaat aaaaagttgc
      361 atattaaatt ccagcacaaa agtgggtgtc taatactttt gaaatctttt atggtttgcc
      421 agggaacaca attttaaact taactaatac aacatcctgg ggaagtgaag cagcattaaa
      481 gctgcttttg tacaacccca cccatctcag cagactggct gcagcccttg gaacttttgt
      541 ttaaagtatt ttcatgaaaa aataattgca cagatttttg gtatttacat ttttagttaa
      601 tctctcctct taccagtctc taaatgttt
//
LOCUS       KCLA01002528             971 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41104upu ultra-conserved element locus uce-491,
            sequence.
ACCESSION   KCLA01002528
VERSION     KCLA01002528.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41104upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>971
                     /note="ultra-conserved element locus uce-491"
BASE COUNT          297 a          180 c          177 g          317 t
ORIGIN      
        1 tataggttaa attgatgtaa attaaagctg ctctgcccag cttattgcag ttgttcggtt
       61 tttgcaaatg tgagtgagag gagctgatgg atggttggaa aatactgttt tctgtgatgt
      121 gagcgaaagt gagtgaggcc acttggtctt cataacccag agtgtttcct gcttgagcct
      181 ctatgtgtac tttaagctag acagacctgt tgtcctctta taggctgcaa attacacagg
      241 caaatgtaat tacccattcc ctctgttatt agtgtacagc taggaagctt caagcaatcg
      301 tccctttctt ggtatttcaa agctcactcg caagattcat ccttgatatt gaacacaatg
      361 agatgtcctt tttttttaaa ttcaattaaa catttgccta ctgtgactct ttattcactg
      421 caaattgtct ctgtaaataa tcttcatcaa aagtcagaac caatccccat tagttgttta
      481 gattaattaa tgagtccccc tggagccacc caaatgaatt caatttaaac gtcaacaact
      541 tggctatgga gtttcccagg ttggcattaa gacaatatta aacctgcaat aagtcacatt
      601 taaaatgtta attcaaagaa gctctccatt tagagcattt aattaaatcc ttaaataaac
      661 tgcatgggct caataccaga tggttctgca ttttcattgc agcagagagc cttgaagtca
      721 ttgagggaag taatattgga ggcatggtga agataaccag gatatatagt gtaataaaat
      781 ctaatcttgt ttccagcagg gagattcagt gtatgtacac aacctaggct aaaattgtaa
      841 gttaattaca ttaaccccag tgtactctgg tatctgagca gccagagatg aaattagtct
      901 ttttcctatc ataagattct tttcaacttc actatattaa tttttagcca aatacttact
      961 cataaggaaa a
//
LOCUS       KCLA01002529            1028 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41120upu ultra-conserved element locus uce-680,
            sequence.
ACCESSION   KCLA01002529
VERSION     KCLA01002529.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1028)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1028)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1028
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41120upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1028
                     /note="ultra-conserved element locus uce-680"
BASE COUNT          326 a          216 c          219 g          267 t
ORIGIN      
        1 ccaggatgat ctgactccac aattcagaaa acagaaatat ccaagagaac tgaagaggca
       61 caggtatgga tagctgaaat aagcagaact gaaaaggcac tacaaacgag gcagaatgca
      121 aaccaaggct tggaactgtt gtcatcaaac tagcacacgg gtttattctc actagttgag
      181 tgcagtaacc tgtgactgga gtaaagttac actccgtgtc aacttacaca gagttttagt
      241 gctgccttca ttgccaccgt tggacaatgg gaattattat cccagggcgt aaagggttcc
      301 ataaagggta ggtggatgaa aatggaaatt caacaccgtt taaggaattc agtgaataaa
      361 ttaccaaaac tgtccatttg cctgcccttt ttaatcttac tgtcatattc aaactattgg
      421 gcatgtaact gaatatctca actgtacctg aagaaataat ggagcgtgtc tctgcagtaa
      481 aacagaacgg cactaaactg atgagtttaa cccagcagaa agagcggctg taaacatgac
      541 aaatgcctgc tattgatttc aggtttaatt actctgtgca gcactgacaa agcccatcag
      601 atgttgttgt gaagtgtaaa tggaacaaac tacacttcac tgcccatagg aaactgatgg
      661 tgtctgcagt ttgcattgtt tactttatcc tccgtaaact tcagccttga tcaaattaac
      721 aagtgctact aacctccaac aactacaagg cactatgatt ttacaacagc agccttggaa
      781 ccatagttct gcagcatttc attgataaca aatgtctggc taataacagc atcatggcag
      841 cagctggacc ttactggcca gcaccagagg catctcgctg ggctggggag aaggtttaac
      901 ctatttttgg ggagttagta ctgcatactc caataaaact tcctaggctg tctagaatct
      961 gttttcacta ataagagcag aacagtaaag gcggactgtg tccagcacgt tgtagctgct
     1021 gctcaaaa
//
LOCUS       KCLA01002530            1107 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41136upu ultra-conserved element locus uce-752,
            sequence.
ACCESSION   KCLA01002530
VERSION     KCLA01002530.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1107)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1107)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1107
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41136upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1107
                     /note="ultra-conserved element locus uce-752"
BASE COUNT          345 a          205 c          152 g          405 t
ORIGIN      
        1 tatttgcttc tgaagcatcc cgaaaatgca aattatgata caaactacta gcacttacca
       61 agagaagtac tatgagccat gcaacaggaa caataaagta atgaagatag acccattttg
      121 tatcttgact cctgttttcc atgtttacaa tggaatttaa ttcattatta ctaatctttc
      181 tgcattttca ttaatttaat agaacagagt gtgctttgtt ttgtaaccat agtttctaaa
      241 acctatacag cttttaattt tgctattgga cacttctcca attacatgta aacattttag
      301 gtgagattaa agtaatttct atttacagtt agtgaaaaac aagctgcccg tacccctgct
      361 gtagtagaga ttataggtga tatataatat gctacaccat atgtttaaag gccaataatg
      421 caactcctaa tctcactctg gctaatcaag ccactcagat tattttacat acatctttgg
      481 tttaggcctt gacatgccct tgtttttctt tcttctcaaa gctaaagttc ccctctttga
      541 ttagctgaaa catttgcatg gtcactacac atttttcatt ttataaatca ttatgcatta
      601 gcagtcttga tcgcctagct tgactaatcc tgatgaactg aaatcacagc tgaaggtcaa
      661 actccatccc actgcacatt catattcaaa caaatctgca ctattgttca ttagacttct
      721 aacatcattt aaaagaagtt actgaatatc ttacccttat tctttatgtt ttctaaaact
      781 ttatatacaa aatgttaatg cttaacagat gatagtagca gaataatgtc aaaatcaaca
      841 ctagcttgct gctggcttgc ttaattttat tggaagttgt acaacctaga tcttaatcaa
      901 tacatgcgta caatcagagt atttctgtca tttcagtgat taatttgctt tgttctaatt
      961 aaacaatata gtatagcctt gctgttgtgt attccaaatg cagcagcttt tattatcatt
     1021 attccttggc tttaaagcaa ggaattttac atttttaaga tattaatttt ctactcttgt
     1081 gataacaatt aggcccattt gtatttt
//
LOCUS       KCLA01002531             966 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41152upu ultra-conserved element locus uce-3869,
            sequence.
ACCESSION   KCLA01002531
VERSION     KCLA01002531.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41152upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>966
                     /note="ultra-conserved element locus uce-3869"
BASE COUNT          249 a          190 c          171 g          356 t
ORIGIN      
        1 gaaatatgcc ctgatttcac cttatttttt cttcttttga atcctaataa tgggggaaga
       61 agtctgtctt ttaaaataga aatgtaacag ttatgataat aattttttat tttttttgga
      121 gtggagcctg gatagtttgt ttctcctccc ctcttcagga aaaacatgac ttatctgcat
      181 tttattatta gatatcaatt tgaatgaatt ttgttcttgt ttgtgtccca ctttttcctc
      241 ttttgactaa ttgcctaaat tttaatgtgt gtacctttcc caaggtcaac ttttgtattg
      301 agctctcttg tttgataaaa acctttactt tttaaagatt ttctttttaa acaacttcat
      361 agatctaatt cttttgaatt ttcagatctt aaagatgcat atcttctgaa catattcatc
      421 atcccccttt ctttggcctc tctttttagt cttttcttct gtctcctatc ttcttcttag
      481 gccatgtttg ccagctacgt ccctgaaatc atagagttaa taggaaaccg caagaaatat
      541 ggtggttcct atagtgcggt tagtggaaga aagtaagtat cctaagaggc tctgctgcct
      601 ctgctgcagt agaacactct ctgcatgcca ttttcttttt tttttttgtg tttctgtttc
      661 atgcatgtag gcaatgtttg ctcgctacgt gccagaaatt gctgctctca tccttaatcg
      721 gaagaaatac ggcgggactt ttaactcaac ccgaggcaga aagtaagtcg aaagagacca
      781 ggtgtggttg tgtgacttta aagagcccct gaaggtggta atagctcatt cacagcttaa
      841 aggctgtatt actcgacatc atattaccac tggagagttg tcacactgtt agagacctgg
      901 gatatgctat ggtacaagtc acattttgcc catacttcaa aaacacctgg ataccaccaa
      961 ggcaac
//
LOCUS       KCLA01002532             599 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41168upu ultra-conserved element locus uce-5075,
            sequence.
ACCESSION   KCLA01002532
VERSION     KCLA01002532.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 599)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..599
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41168upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>599
                     /note="ultra-conserved element locus uce-5075"
BASE COUNT          173 a          127 c          112 g          187 t
ORIGIN      
        1 gggtaacatg actttttttt ttcagtaaat ccaaatggaa tataaataac gctttgcaat
       61 tacgagtgtt taaattccaa tttttttcag ctattcactt tcagaatcaa acaagaggtt
      121 gaatttatat cgcctgcagt tgttattgga aaggtatgcc ccgagatggc taaatgaagt
      181 cagtcccagt gcaattatga tcactcaagc atgctttcaa cgtatcgtgc caaattaggt
      241 agatttgagc aatttgactt cctgtaacaa atctccaggg cactcttgag aaagtacaga
      301 ctgtttacaa acactctcca atttcatgag gaactcagcg cagcagcggc ctgagcggca
      361 cataggcaca cacctgtcaa accgtgacag catggacccc tcgcaccaca tgtgctggag
      421 aaagacctca ctctctaggt tttgttatcc tttatttgca atcgaaaagc tgaaaggcca
      481 ccaaagtttt aattacctcg gactcggtct tttgaaagcc aaactgctac aatctgttga
      541 atgtcaatat tgccagcttt ctggattact ttttttcttt gaattatttt tttgttgaa
//
LOCUS       KCLA01002533            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41183upu ultra-conserved element locus uce-4456,
            sequence.
ACCESSION   KCLA01002533
VERSION     KCLA01002533.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41183upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-4456"
BASE COUNT          291 a          183 c          191 g          361 t
ORIGIN      
        1 gctacatatt tggctgttta gaaaaatagg ctatagattt cagtgaacta tctttagctg
       61 tcatgagacc tttttaaaag ctgccaggaa aattttttag aaaatgattt cctattttgc
      121 ataaatttta acacctgtta attgtggttg cttttttcct ttctcgctgt gtcgcgttag
      181 acaccctggt tatcaaagtg atcgtatcac tatggtatgc ctcataatta tgatcaaact
      241 gttatctaac attcctggag cattcttttt ttcaatactt aatacctttt attccttggc
      301 ctcatgcatg aattatgctg tgtatgtgaa gaggcttaaa gtttgtttcc attacattct
      361 ttctgaatgg atcctgttgt atctaggatt tttttaaagc caagtaggaa tgttattgtt
      421 gaccttgaca ccagataact gggcagacat tatatagcta tgtttgaatc ctctcaaaat
      481 gtgatgctaa agccaacaga atcctggcgt gagaccctcc tggatagcag agttatggag
      541 cttttcttta cagtaagttt ctttcttcaa ctttcatagt ccagtccaca gggaaagcag
      601 cttcttcctg ttctgaaact gtattgttgg actcttcctt ttgcatcagg taggactgac
      661 tgttaacttc agcttgctta cagaagtatt gcatttttcc tgggctactg aacatgtatt
      721 ttgcctgtaa attgtttata ttgatgacct taacaaaaga aaaaggtata taatgatcta
      781 aacttttaca cactatttat ggccgcatgc ttggcaaatg aaaccagcat gatgagcagc
      841 agtagagtgt atcttacaga taaggtgtaa tggttatcaa aaaagataaa tgtgcagtct
      901 gtgtttgctg atcttaaagc atttgctcaa caggacagct gaaaataagt actgtagttg
      961 cagttttata gccagtttca gcatacagaa ctctgcagcg cttttctcag aacaaagtaa
     1021 attcaa
//
LOCUS       KCLA01002534             716 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41199upu ultra-conserved element locus uce-7739,
            sequence.
ACCESSION   KCLA01002534
VERSION     KCLA01002534.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 716)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..716
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>716
                     /note="ultra-conserved element locus uce-7739"
BASE COUNT          204 a          176 c          147 g          189 t
ORIGIN      
        1 gaggaacact acccacagca caaacttcta caattttcag ccagaattga agaaatgtgg
       61 ccctctcctc ttgtcccact cccaccttat ctggagaagc ccctcacaga ctggagccag
      121 agaaactttg catcttcaca ccatttgttg acacaaacct catcccctgc cttacttttg
      181 cagaggcact gggggtgggg tggagcaggg gggaacgtct gtttccattt gaaactgtca
      241 aaattagcat tcagtaatta aaaatcacac cctttctctt aataacctaa ccagcatgat
      301 acaatcaggt tgtgccaact ctttaatcta attgactaat tacagatttt aatttagtca
      361 gttactgaac aactgttgac aatttgtttt cattagggac agaacaggat aaatatttag
      421 gctccccagt caaagactaa gacataagct ctgggttctg acctccagtt tcacacgggt
      481 gccttctcca ccagtatcac ccatggaaag gtgccgcctt ggaacgtcct ggtcccattg
      541 ctgggcagcg aaggttgttc catcaccata acccgtatta tttaaaatat aaaattaaac
      601 tatcccagct ctgaacaggg tttaagtgac actcaggctt gcaggtggga tggatgtacc
      661 agtaccctga actgggatgg aaggctgagc ccacagcact gctggaatag ggaatt
//
LOCUS       KCLA01002535             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41214upu ultra-conserved element locus uce-7299,
            sequence.
ACCESSION   KCLA01002535
VERSION     KCLA01002535.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41214upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-7299"
BASE COUNT          105 a           49 c           62 g          115 t
ORIGIN      
        1 tttgtctata gtgcttcctg ccaaaaaaac ctcctgacag gaaataaaca ttaaaataat
       61 ctttaatccc ttgtctggtc tattaccatt aacaattgat gcactttaat tttgtgggat
      121 tttaactaca aaatggaatg gctaagtagt gataattggg tttggaatta tacggtcatt
      181 tatatcaaca gaaacgcaag tggctgggag ggtgatgaat tatttagcat ttcctggctg
      241 tgctttctat tatagaaatt tctgagatat tctgctgtga acaattatca ccaaatgagg
      301 ataaacaaat ctgtgatgtg aagtcttatt t
//
LOCUS       KCLA01002536             948 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41230upu ultra-conserved element locus uce-3703,
            sequence.
ACCESSION   KCLA01002536
VERSION     KCLA01002536.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 948)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..948
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>948
                     /note="ultra-conserved element locus uce-3703"
BASE COUNT          248 a          167 c          200 g          333 t
ORIGIN      
        1 aagaccaaag tactaagatc acttcaactt tataaacagt aagaagggca ttatgactct
       61 tcagttaaat tgagactgat ttaccagtcc atgagctggg gctgcaattt gaaatggtga
      121 ctaatgacaa aaacaagaat aaatgtctta ataattgtac tggtctaact tttgtgtgat
      181 tactgaggtg aggctgaaca ttttcagtgg ctggcggaat cttttaagtt ttgtgaacta
      241 gtacagtaaa gaatatcaac taaggaaaaa ataccccaag acaactgact tctcttccat
      301 tgatcaagat aaaaagcaaa accaattcag aaataggtac caactgtaaa atgttttgtg
      361 tggacctaaa gaacaggtgc tctagcagtc attttctttg cttgatcatt ggaattatgt
      421 taactttgaa tgcatgtctt ttacttaatt gggtcatgtt ttttctaaaa tttaaatttt
      481 tcttcttcct atagccctgc cataggacag gctgaggcag agtctcagtg ttgccctgtt
      541 cagtctgagg caagtgggat ttattttatt cattctgggg gctttcacag ctttatggct
      601 gttggatctt tatgtcccca aacttgcagc aagtttggtg aaggccccta aatttatttt
      661 aatttaggtt ttttattctc ttgctagatg ggctctatat taatatttat cttttgttgt
      721 gttaagactc ttagggggag ggaacatgtt ttatggtgtt gggatacctt ttctcttagc
      781 tttcaaggct gctcaggtag gccttcagcc acactgcccc tccttcttcc tctgcatggc
      841 atttgtgctg cttttgggtt tggtaatgtg actttgtcca gtctctgaac tagcggcata
      901 taaatactgg ttactgatgt ctcctcttct ggggagatgt ggttgctg
//
LOCUS       KCLA01002537             440 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41261upu ultra-conserved element locus uce-7102,
            sequence.
ACCESSION   KCLA01002537
VERSION     KCLA01002537.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 440)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..440
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41261upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>440
                     /note="ultra-conserved element locus uce-7102"
BASE COUNT          123 a           84 c           87 g          146 t
ORIGIN      
        1 gcgtggggtc tctggagctt tgcaaagcac tgaaccatgc agctacagct gtcctccaaa
       61 caagcccaac attctttatt tatttgttat gaaatattta tggatgttat gaaaggttta
      121 aaataatgtg tctgtctctc tctctccctc ttatttttgc cctggcacag tgttttctaa
      181 tgcataaata attctggcct gtggacagtg ggacagcaca ttaggtggga tgtatctgct
      241 gtatcacatt ctttctgcct gagagaaaat atcattccta gtaattttct acacttatac
      301 aatctacgtt gacagtaaat aattgatgta tgaatttagg actaaactcc aacacaatat
      361 gactttatgt caagggttac tcccagcaga ttttgagcta aatcatcttg caaaatggat
      421 tctttcagag ggaagggggg
//
LOCUS       KCLA01002538            1018 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41276upu ultra-conserved element locus uce-6966,
            sequence.
ACCESSION   KCLA01002538
VERSION     KCLA01002538.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1018
                     /note="ultra-conserved element locus uce-6966"
BASE COUNT          293 a          200 c          178 g          347 t
ORIGIN      
        1 actagatttt ttaaggtatt cattgccaga cccatgttag cttaaaggtg aaatatctct
       61 tccgtataca gcactacagt cttatctgga gtttgagcag tttaaagtta tcatttattc
      121 atactaatgc atcaatcaaa agtgttttgt caggagtctt tatcctgtct ttttgtatat
      181 gtccttcata ttcctgggta ttaacaaaca ccccagaatt aataggatat acagagtgat
      241 tgatgtattc catgttgtta ttaagttgct ggtatccaag acaggggttg gtttttttct
      301 ttcttcttct tcttttccgt gggggatgag gaaggacctg tcccttttta accacttgct
      361 ctgaatgact tttataccca atataagtaa gaaaagagga tgaatgtcac ctctcttctc
      421 ttcctcctcc tgccgatgca tactcctcct tttgattgac agctactaat aaccttcctg
      481 ccctaagtgc catggagaca ctttattagg acaaacagcc aaggaaatct aggaatgaag
      541 ccaagcctgc agtgagttat tatcgggctt gtatttatct cagctttgta atttttttca
      601 gtgatatgca aatcctgaaa tagatcttct tctgttgaag gacaggtccc tctgttaatt
      661 gatccactga gattcagcct aacctctttt agctatcagc cagggaaaca ggctacataa
      721 aagagtctca gtgctgtata cagttcacat aaattctctg tgcattctac aaggaaaact
      781 tctgcacaga aaatgcattt ttagctcctg aacatatttt acatctcagt gctatctgca
      841 taacagatca aaccgatttg tttatttgtg tattagatat gtatgagggt acacttttat
      901 aatcacaagt gattttagac agagcttact tcctttctgg attgatacag caccaccact
      961 tagggtaaaa acacattaaa tgaaattcag gcataatgaa aagacatttg ttcaaaat
//
LOCUS       KCLA01002539             919 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41292upu ultra-conserved element locus uce-953,
            sequence.
ACCESSION   KCLA01002539
VERSION     KCLA01002539.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41292upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>919
                     /note="ultra-conserved element locus uce-953"
BASE COUNT          300 a          197 c          139 g          283 t
ORIGIN      
        1 tcggtgctag ccctttgctc agaaacacaa aaagctaaaa cgtttatttt cctcctgcta
       61 cgttttcatc cgtgatcaca acgcaaagta aactcagctt tgacctaaga aacacctcag
      121 cgcattaaaa tttcaacagg caatgtcagt gttacattaa acgagaagac ctccagttcg
      181 ctgcagagct ggaatttgaa taaaacgttc aatgttaaca aacaatacac acgtttggca
      241 ctttgtgtat taaatggatc aaagagattt gataaggcac aatacaccat ttgtgcagac
      301 ctgattgagt taatataata tcagcaaatt ttacagcgaa atgaatctgt ttcttttctt
      361 tgtgtttaaa accagcacag attacaaatt ttaatgatct gaaaatgttt ggtatacaaa
      421 atcatgctta tttcagtatt agcaaaaaca caagaaattt ttcaacacaa acacccagct
      481 gtgtctattt taaaagcagt tcaatgacag cttgcactta tgagcatgca atcagctaat
      541 ttcgcttttt ttttcttctg tgttaatcaa cactttcctt cctgcatatc agagtacaaa
      601 tagtatagtt actccacatc agtaaatgtt tacgtaacct gtcctttctc aagaatccgg
      661 ttacaccgaa tcattacatg ctagaccgag taggaaaatg cactgggccc agctacccta
      721 atgggatcct agtgcaccat aatgacatgt attagttaat gatcatcata atcataataa
      781 tatgcaggaa tcttaccttt catcttaccc cttgccatgg cagattcaag tctttttctc
      841 cacatcgcac tcttcctcaa gaattcccat acattgactt cagtgtcaag caatgaaata
      901 attactaagt gacatgact
//
LOCUS       KCLA01002540             984 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41323upu ultra-conserved element locus uce-1034,
            sequence.
ACCESSION   KCLA01002540
VERSION     KCLA01002540.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41323upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>984
                     /note="ultra-conserved element locus uce-1034"
BASE COUNT          289 a          205 c          146 g          344 t
ORIGIN      
        1 ggtaggacag ctctcattta ttttcacctt tctgtaaccc ctaagaagtc acaatcctct
       61 cacagtctaa tcagcatggg aaactgcaga atgaatgtgc tggaaaattc ctttgaagcg
      121 caataataat atttttttat atatgaattc caacatagtt tttgggagct cgacaaaagg
      181 aagtcatggt tattgtttct ttaatttttt ttctctttca cagagctttt caaagacact
      241 tgcttttgca taagttgtaa gtttatgtca gagtcctatg ccagtctctg ttacacattt
      301 tagtgtattc tgtactgccc tgagagctaa cccccctccc ccaaagaact ctctcagccc
      361 cttcatctgt aacctttctg caagtaaatg ctaattgaaa aagaaagaac accactaatc
      421 ttggaattta aatgcattta acaaaaccaa tctcaatcta aattgttgtt tcaccattcc
      481 cttttcccca acagatgtcg agaaactgca attcctatta agaacacttg actgtttact
      541 cagcaagaga acttcaggct cgggctgcat caatctaaat gtgtttcagg acgtcagtct
      601 tttgaaaagt gcagactgtt agttggttat ttttaaatgt aatctcacat aaaagagttg
      661 ctgcattttt tctttttact ttatcatccc tcctccttcc tctctttttt ttttttaaat
      721 gatggcatca aacacagaca tcctgaattt ttatgtccca ttccatttac attcctctcc
      781 atagtgcaat ttttcacttt tttctccctt cttttcaact ttgaccgaga acaatatcat
      841 cagtttgtga acaatattgt agggaaaaaa aagttcagaa atgttatata ctaagaatgt
      901 tagatgtgaa aagcaggaat atattttctt actgaatttt acaataaagc ctccatgggc
      961 tttgaccaca gacctaagta aggt
//
LOCUS       KCLA01002541            1060 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41338upu ultra-conserved element locus uce-8044,
            sequence.
ACCESSION   KCLA01002541
VERSION     KCLA01002541.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41338upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1060
                     /note="ultra-conserved element locus uce-8044"
BASE COUNT          339 a          187 c          221 g          313 t
ORIGIN      
        1 atacatttat ctggaatgaa ctcaagatgt ttaattgata catgcttatg tctgaacact
       61 gtcaggtctc gtaataagat gtttagtaca atacatcggt tagactgcta gagtccagcc
      121 acagtaataa gtaatgacat ttgcagcaca aaggcagctc cccaacgaat tggtgacaag
      181 agtaaaaagg caatctagcc tgtgtaagct ttaaatgtgg tctgaatttt acaattacat
      241 gtcctatagc ccattattag acatgatggc aatgagaagg aaagcagtca ttgcatcact
      301 actaacacca attataggaa acataaatca ttcaaatttt tgtactttaa taaaaatctg
      361 cctgaattgg tgtttaaagg gaaggatcta gtacaggagc ctaatgggat agaagaaaat
      421 agagtaattg gaggttgctg tcttttcact ttctatataa aattatttga agagacagcc
      481 aagaacttta aacagcagaa acccagaaaa gttgtaattt ggatgtcttc agttgtgact
      541 ttaatggtgt ttacttaaag agctttcttt tatctctgca gacatacttc aatgacaata
      601 tcctcacact gataaggacg ttggtaacag gaggagccac accagagctg gaagcactga
      661 ttgctgagga aaatgcattg agaggaggtt acagtacgcc ccagacactt gcaaacaggg
      721 acaggtgtcg agttgctcag ttggctttgt atgatgggcc gtttgcagac ctaggggtaa
      781 gatcatgagg gaaatatagg accaagtctg gtcagtactt attttcactt ggactgaata
      841 atttctatta tttgatttac tagagctttt gggtcattta acaattcccg acacactgta
      901 ccatgtttgc ttttaccctt tttaagaaga tacatgactt cccagactcc ttgcctggac
      961 atttcataca gaaaatcctg tggcccttca ttgtgagcta aagattgcag gatataacca
     1021 aaaaatcgga tgtaaatatg agcgacatct gagtctgttt
//
LOCUS       KCLA01002542             320 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41352upu ultra-conserved element locus uce-2926,
            sequence.
ACCESSION   KCLA01002542
VERSION     KCLA01002542.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41352upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>320
                     /note="ultra-conserved element locus uce-2926"
BASE COUNT           89 a           69 c           50 g          112 t
ORIGIN      
        1 atcaaacaac atctgtgttt atttaaaagc tcaggataag ccacgaggtt gctcccatcc
       61 ctctttcttt atcccttttt acaagtatcc tatttttgaa tcggagtccg tgagagtttg
      121 acattggatg actttataaa accttctcct aattggattc gttcaaataa ataaatcaaa
      181 cgctaattgg aatgtgccct gccattattt gtgcttactg aattagctag aatggcgtga
      241 agttcttttt atcatatttg tgcacttatt taaacacccc cctggcgccc acttctgcaa
      301 attcaattag ctattcaaag
//
LOCUS       KCLA01002543             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41368upu ultra-conserved element locus uce-7788,
            sequence.
ACCESSION   KCLA01002543
VERSION     KCLA01002543.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41368upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-7788"
BASE COUNT          281 a          156 c          178 g          214 t
ORIGIN      
        1 attgtttcat tacttatcaa agacagtggc ttacacacct tgcagtatct agacagcagt
       61 ctcctgggat gtcaaaagtc aaagcaacat cagctcttga ctttatccag gctctatgat
      121 gtacaatgtc actgtaacag agcacttcct ctttgttcca ggggaacttg attcatagtg
      181 agcccatcta gggtgtacac aggttgtgat aaagagctct ttacagaagc tcctacttta
      241 gagaaacagg tgttggcttt gattagagaa aaattacatc atccaaggga gaggagaaaa
      301 aaggcaaagg gaaaggaagg caaaaataga aaaacgtggc aaccagacac aaatacattt
      361 gcacatataa agctgttcta atgagagcca aattgatttg acattcagtg gcagtttgaa
      421 gccaaaaaaa gcgaagcagc ctacaaaagg cctagctcat tgtttatgga gtgtcatact
      481 tcatcatctg tgagaccaat aacagtgatg ggaagacctt taaaagcagg gagtctgcac
      541 agaatggctc tgtggatact gctgatgtca gatccaatag aatgactgca agctatttcc
      601 tgaattgaaa tcatgtttgt cagatgaaga agatactctc tacagagtat acctttgtga
      661 agaggatttg gtgcactgtt agaattcttg gacaatttct cttgggctga cacagccaca
      721 gtacctacct tatgacgggc aaagatcatc aagcagctct gaagaaaaaa cgtagaggac
      781 aaaaattacc taacatgcaa atgcagtttc actatatgaa aattaatct
//
LOCUS       KCLA01002544             785 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41383upu ultra-conserved element locus uce-1622,
            sequence.
ACCESSION   KCLA01002544
VERSION     KCLA01002544.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 785)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..785
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41383upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>785
                     /note="ultra-conserved element locus uce-1622"
BASE COUNT          196 a          232 c          214 g          143 t
ORIGIN      
        1 ctgcggctgt gccctccgca gggatgccgg gcacgtctcc cggaggcgag ctgtccccac
       61 acactccata aaaacccagc gacaatgact cctcacacaa ctccctcagg gtggcacggg
      121 gatgcttaca ccccctgccc ctacaaaggc tcccgggcag cagtgccggg gcggtaggaa
      181 ggaatgggtt ggctgcagga gtacccgaca gggccctcgt ggttctgaag ctctgagcac
      241 aggcgacacg agcaaggcca agcgcgtttc acacgggctg ggggcacaac gtctgccagg
      301 ccgaggagga gaggcggtta aagcctgagc taagcgaatc cttcagccac ttcccttcag
      361 agaagagaaa tctgacccca ggaaataaat aaaagtcacc caaaaagtga acaaaagagg
      421 tgtttgagaa aagcccagcg ccattcatcg cagctaacga cttgttcatt atgagtgatg
      481 atggataaag acttctcacg ctgagatgaa atcaagattt atatgcattg tttcctctcc
      541 caacttgtgg gaagatcatc atcatttaat tctatctctg cggccagtga tgggcatcca
      601 gagagccggt tatcaaacgg cgcagtcagc tggcaaaagc cgcagcgtgc ggttggcaca
      661 tctggacgga gccgccacag ccgagggtga acaatgactc ctggccagcg gccaaatagc
      721 tgcggaggct ggcgggtctc atccacagcc acccctacca gcctctcgct ctcctctccc
      781 accct
//
LOCUS       KCLA01002545             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41398upu ultra-conserved element locus uce-3808,
            sequence.
ACCESSION   KCLA01002545
VERSION     KCLA01002545.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41398upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-3808"
BASE COUNT          224 a          152 c          213 g          227 t
ORIGIN      
        1 ttcttgtgac tgcgtggcca aagcacagta gaatgtagct tctgccatta gaaataagga
       61 gctgcctctg cagctgcatg ggcagtgaga ggcagggtgc ttccacagag cagcagccac
      121 aaaagccgct ttctggcgga gcgcttattc cttaatcagt agctctaatg aagggttttg
      181 tcatttatta aaaaggagga ggaaaaaaaa ctgagagaga aaagagagag ataaaagaaa
      241 cagccaagaa ggagaaaaga tggggaatag ttgggattat ctctgtgccg tctctcaggt
      301 ccagtgacaa cacgactaca atgggtagct ttcaggactg catatggtct tccttccgag
      361 ggagttgatt aagcgactcc ggatgaaatt gaaatcctgt gatttgacct ttgtctggcc
      421 tgggaggact gcaattcgca taacaatttc cttttgttct ttgtttggag ttattaatcc
      481 aacatgagcc tcgaattaat caggggtagt gcgttgttac atttctaatt cacagctcca
      541 ctgcttgtgt cttttttaat taaggccgaa tgatagcagg ccttagcccc tgattgcaac
      601 acttactaac cacacattga gggatgaaga ggctaaatag gcagaatgag attacttcaa
      661 ggtttcactt aattgttttc ttcctttaag taaagagcac taaatgaatg ctgttaatgc
      721 caggctggga gtatttcttt tatatctctg ttggtgcgtg caggggtggg ggaggttatg
      781 acgggtgcac tgaggactcg gggcgctaat ggctca
//
LOCUS       KCLA01002546            1070 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41414upu ultra-conserved element locus uce-7094,
            sequence.
ACCESSION   KCLA01002546
VERSION     KCLA01002546.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1070)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1070
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41414upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1070
                     /note="ultra-conserved element locus uce-7094"
BASE COUNT          286 a          227 c          223 g          334 t
ORIGIN      
        1 gcatgccctt cacctcagca aatgtttcct gggttacagg ctgcctagaa acccacacca
       61 gtatggcctt tccttcactg tagaagtgtt ttcagtgtca gctgccttct gggcttaaca
      121 gacaggcctt catttgacgt gttatgtcag gaaaaatgat gggttactgg tgtttcttgg
      181 ggatgcagtc gtccatcaac aagcacagca tttccagaag agacctgtgc tgggtaggtg
      241 ggtatttctt ttggcagtaa atcccgtcag gctgtaacgc agatgtggtg ttttcactgc
      301 tcagtgtgag cctatctcac aatacaagtg ttaagtcagt ttctgaaaat tcagttaaga
      361 agctttggct gtgtgaacta ggctcagtgt tctgtttcaa atgcctttct agctttctgc
      421 attttgaaga acctaaagcc tgttgttttt ctaggtatct tgcggtaccg agtggacttc
      481 cagggaatgg aataccaagg aggagacgat gaattttttg accttgatga ctactaggta
      541 gtcgacctgg gtccggcaac atgtgcctcg cccctccagc atccaaccca aggagaaaac
      601 tcatggtgga aaacacaaca gatccctgcc ttagaattgg aacatttcca gaacttgatc
      661 cacaagcatt gggtttaaaa aagcaaaacc ctacactttg atttgtcata gtgtcagtac
      721 agcagcaaac tactaagttc ctatatgcca ctttggacta atttaaaaag aatcccagtt
      781 tttactttta ctcaatggtg aaattggttg ctcttgtatt ttatgaaaat gattttttta
      841 accttcatga tacattaact gctgtaaacc tcttccttcc aaaattaata gaagtaagat
      901 cctactggtt ttttttcttt tactttgatt ggagaaatca attgctgcat tttgcagtgc
      961 tgtgacccat ttacatggca ttctcagctt agactgcaga agaagtgtgg agccattcat
     1021 tctcttccaa agaataagaa ggcacttcct tcaagtgcca gcttataaca
//
LOCUS       KCLA01002547            1147 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41430upu ultra-conserved element locus uce-7133,
            sequence.
ACCESSION   KCLA01002547
VERSION     KCLA01002547.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41430upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1147
                     /note="ultra-conserved element locus uce-7133"
BASE COUNT          342 a          216 c          253 g          336 t
ORIGIN      
        1 ctatccaaag gttcatcttt taatccatga cattctcatc atcccagttc tgcagattta
       61 gaagtatttc attctttcat tgtacggaca gagcaatgag cattatcata gggttagtaa
      121 ctctgagtgg ctatgctgat gagctaactt aatcctttgg aaggggataa tagggtaata
      181 aagcacaaag gaataatctt ggtcctgtct ctagtgttct gacaattgcg ctctgctctg
      241 aagcagctta atgcaaagca accaagaaaa aaatgactgt aattgtcagc tgcacagatg
      301 agaggatgtc cacggctgtg tcactcactt taatgagtca tgggaagagg gaaagtggag
      361 gaacaaatta aaaaacccaa catttttctc ggttccccac aacagaagaa agtgaaaata
      421 gttgcaattt cgtttgcttt taaagcacag ctctcgggta ataaatgctc cctgcaaatg
      481 tgctgagcaa acacctccac attcatcaat atgcgggagc tgtttattgc ctcataaact
      541 tggaagcaag tgatattgtc tcttaaatca atggctgcat ggacatccta ggcactgcag
      601 gagaacagtg catccagaca atgctgatac ttaaattaat gggtctagta atgactgaaa
      661 ggtgctctgt cactgctgaa aaaggtaggc gtagattaga agtgtgccga ggacacaatg
      721 catgtatgtt atgataggga tatctctatg tatgtgtctc attatggagt tttatgctgt
      781 ggcataaaaa cttactgctc catgcaggtt tgatttaaat gttgcttggg ctgccagtac
      841 taatagggtc aaacttggtt taagcctagg tgatatacga acaagggctt taattctgtg
      901 gagaagatgg ctctgctggt aaaaccgtta gctttatcaa tttcaaacca gattaaagag
      961 ccaataataa tctggattca tggcatccat tatctgaaaa tgatttataa acacagaatt
     1021 agctgacatg gcattgcaag ttcctcatcc gcagtgtctc gagctgatcc tatcttcttt
     1081 tcctgaaagc aagataatac acagctggaa ggtgttgctc cgggtctgca gctcttggtg
     1141 ttctttg
//
LOCUS       KCLA01002548             915 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41446upu ultra-conserved element locus uce-317,
            sequence.
ACCESSION   KCLA01002548
VERSION     KCLA01002548.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41446upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>915
                     /note="ultra-conserved element locus uce-317"
BASE COUNT          221 a          186 c          217 g          291 t
ORIGIN      
        1 ttctgcgtca aagtgtggtc ctaccagtgg gacagctcct taaccatggc catcgccatg
       61 gctctgctgt atttgctatt ctctgtggaa gttgagggtt ttctaaagaa aagaccaaac
      121 catttccaac agtgccagag tgggtgccag caagattgta gtttaaaacc acatgattaa
      181 aaataagttt cttgaaagcc ctgtactctg tttataaaaa tagatggtga acatacggta
      241 caacataaaa atccatgtgg tcctggaaaa ctctttagtc taaaccagat gtgcgaaaga
      301 gagctcctaa ccgtattttg tatttgtgtg tgtttgtgta tgtgggagat atttttggtt
      361 cctgctaggc ttctttgcag caaagcccct ttctagaatt tactttcctt tattagagtt
      421 gcagctcggc tttgtgtggg cctctggggg ttttggccag ccgttggcaa tttctctcag
      481 acacccaatt acccctgacg tcaatgccgt ctctcccatc tcccttgggt gcccacattt
      541 tttcctttgt aacactaata gctgactagc taagtgcctg ttatttcctt ggcagaagat
      601 ttgattgtgt tttgggccgg atactaaatc caaaaactat gtaaaaatgt caataggtga
      661 gtgcacattg atttcggtta gtcacagtga tatttgagcc cctttggggg ctctgtctgg
      721 ggaagtattt tacaagaaag ataatataac agaaaattac tggagctgca caggtctctg
      781 gtgggtttct taggggcctg ctaagtttct gtagaatcaa caaatgcttt attaatctaa
      841 atttgcggtt ttgttcctgc ctctcttcag acggtttggg ctcgctggag gaggctcggc
      901 gggagtgggg cggcc
//
LOCUS       KCLA01002549             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41477upu ultra-conserved element locus uce-7848,
            sequence.
ACCESSION   KCLA01002549
VERSION     KCLA01002549.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41477upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-7848"
BASE COUNT          278 a          133 c          157 g          271 t
ORIGIN      
        1 aagcaaccag atgagaaatg gatttttatt cagtcaaatc cttttagtca atgaaacagc
       61 actttcatgc atactgcact caagtgataa ttaatatagt ctaattccgg acatgatgcc
      121 tgaattgatg tactgtcatc aataccccat gttaaaatca aaccttgaca gggacttaac
      181 accctggaac aggtcatcat atgataatac tcttttttcc tttcagtatt tgtcttcagc
      241 caagcaaagt attacaagat ggggggaaaa gaggggaaat aattacaaat gaagagtgac
      301 gcaggctgtg aatagaacat atgttaggct aggcagaggc atcagtgaat tttatcattt
      361 catgatgaag cggcagtggg gctgaacgga cctattttaa accttgatgt attttatctc
      421 tactgtattt ggactgtcat ctttggagaa agactttgtg taattgagag tcagctccaa
      481 tctgcatgac ttgagcatga agtgtaagcc agatgaacag tgttatggaa gaaagggaag
      541 cgtctaataa ggtataaatg agtaataacc tttatacctc agacatttaa acatgtttca
      601 tgaaatacgg tgtttaatgg tattaatttc acgctactat taataataca aacaacgttt
      661 gaaaatagtt taggttttgc tttgttttaa taaaatctac atatttacag atgagacttc
      721 ctttgtcaca ttgaacagac aaatacagca tagcaaattt ttccttaaat aattcttgtt
      781 cataataatt ttttgttcat aaattcaagg ttcatcttcg taggctgaga ttacagttt
//
LOCUS       KCLA01002550             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41493upu ultra-conserved element locus uce-7073,
            sequence.
ACCESSION   KCLA01002550
VERSION     KCLA01002550.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41493upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-7073"
BASE COUNT          262 a          147 c          193 g          174 t
ORIGIN      
        1 gatgatgagt tgtcagaact aagaggggag tcttacaggt ttgctgagaa aatgcttctt
       61 tcagaaaagc tagatgtgtc tcattctgat actgaagagt cagttactga ccatgcccta
      121 ccccttagtg cagagttgca ggggtcagat aagcgatgca gagacaaagt agctactgtc
      181 cccaaaaaag agattctctc caaaatgtat aaagatgtgt ctgaaaatgg tgtaggtaaa
      241 atgtccaaag atgatcatta tgataaagtg acagtgttac actacactgg agatgttagt
      301 agtccaaaac atgccatgtg gatgcgcttt actgaggaca gattagacag aggtagagaa
      361 aagttgatgt atgaagacag ggtggacagg actgttaaag aggcagaaga aaaactcact
      421 gaagtctcgc agttttttcg ggataaaaca gagaagctga atgatgagct acagtctccg
      481 gagaaaaagc agcataaaaa aagtggcaaa gaaatccatt ctagccagag ctctgccagc
      541 agcagccccg agaaagttct gctctctgaa ttgccactgt ccagtgacga atggggtaag
      601 gtgaaaccct acacacatga tggcaagtgc tttcccaaga tggatgaaag aaaagcatcc
      661 agtttgccca gcagtcctga aaaaaggata tttgtgcaac cttccgagga ctctaaacaa
      721 actatggaac acaaaggaag tgctcagcag actggagctc ctgacgtttc acagac
//
LOCUS       KCLA01002551            1033 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41509upu ultra-conserved element locus uce-6942,
            sequence.
ACCESSION   KCLA01002551
VERSION     KCLA01002551.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1033)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1033
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41509upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1033
                     /note="ultra-conserved element locus uce-6942"
BASE COUNT          334 a          192 c          196 g          311 t
ORIGIN      
        1 tatagataag gaaaatatat tgccccaaac ccacctggaa atcattgaca aatgtatgcg
       61 acttagatca gaatgtaatt gccctgattc gacctacata gggtttttta aaaactgacg
      121 tcgcttgttt tagtaatagc gttggctacc agatgtaaag cctcccaggc taccttcctt
      181 ttccatttga gctcaggcat atcacaaaag ctttctaaca tgagcggata ccagtaaaat
      241 tgtgatgaaa accataggta ggaatatctg caagtggctc acacgaaagc gtttagtgct
      301 gttcatgcac atgtgtgaaa ccatggtggt aaagagccct tccttgaaaa tgcattaatt
      361 atttgacact gctttgcctc attttttttg ctatgggatg caagtgaagg attacagctg
      421 aaaaaatgat catcatactt gaggtaggct cacagaatct tttatgttcc atgtgaagtt
      481 gtcttgaact gaaacctctg ctccttaagg attaaaggat tgaaaagcaa agactgaagc
      541 tgctgtaatt taaaccattg ttctctagca caaaggtgaa aacagactaa gccaatctgc
      601 ttctttccta gttcagcgaa gaaatgattt tgccttctta aagttttgtg ctattgacat
      661 tccagacgca attgttttta atggaaatgt cgtcttttga ttttttaacc tgagatcaga
      721 gccgtgacac acgctggcca tggtttcaaa ttgcagttta cggcatctct gaaaaattcc
      781 atccgtgaga caaatagaca aatcataaac ataaaattaa tcagcaaatg tcagtgagtt
      841 ttctcgttta taaaaatatc cagtctccag aaatactctc ggagcagttt tctattgcta
      901 ttttaacaaa tacttttata atgaaagagt cataaaaagc atcagacaca aacttagctc
      961 caaggactgc aggagaagag ggagcatttt gttatagttc agataatgaa tacattcact
     1021 gggcagaaaa aat
//
LOCUS       KCLA01002552             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41524upu ultra-conserved element locus uce-1272,
            sequence.
ACCESSION   KCLA01002552
VERSION     KCLA01002552.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-1272"
BASE COUNT          186 a          104 c          129 g          163 t
ORIGIN      
        1 ctttgaattg gaaaacaaaa ttgcaatcag accaacatga tttcctcatg gtctgaccac
       61 gctaatacca agttgagaca tgggcaaatg tatttaaaag tcataatggc atattaccat
      121 gcaatctctt tttactggcc cttattaata taaaacttca atttgcatgt aaatgcagtc
      181 aactttcata tcatcaaaat acatgaggcc tgggaaagta atgaattgaa gtttgatgca
      241 gcaattactg acgtttataa agaattttaa agaggtcatt ctagccttgg ctgagaaaat
      301 gaggaaatca acagggaata ttgtcaatat agcaacagtg ggagttggag tcagtcccag
      361 gtgttagaag gccagatgat gattaataga gagggcgtat gaagcctttc acccagaagg
      421 actgggctgg acctgaggct caataacaga gatctcatga aaaggttctt gctgggttcc
      481 cactttagct gcttcgaaat gtgttccaga gggaaagcaa gtgtttatga gacagagcat
      541 tgctgaaggt ttaattgggc tccacatcct ttcagctccc tt
//
LOCUS       KCLA01002553            1073 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41540upu ultra-conserved element locus uce-1914,
            sequence.
ACCESSION   KCLA01002553
VERSION     KCLA01002553.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1073)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1073
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1073
                     /note="ultra-conserved element locus uce-1914"
BASE COUNT          299 a          247 c          178 g          349 t
ORIGIN      
        1 tcatccttgg aagcattcag ggctgggtcg caagaggttg gaactagatg atctctgagg
       61 tcccttcaac ccaaaccatt ctatgattcc atattacccc tcacagtccc acagacacca
      121 ttgtactggg gagctggaac tgtcatcacc ccacatggtc aattcatgag tgcgcagctc
      181 atttttggaa ccaattgctt atgtcttaga aaggagattt attcttcctc cctcttccag
      241 cctccacctt ccccaatcct tgtcaatctt gctttctagg ggaaaatgag gaaggtgttt
      301 agcagcctca attgtctctg tgattcaaat gactgaatga agccagaccg caaaacaagc
      361 gtaaatcagg caaaggctgc ccattctgct tctgctttct ctgcaagaat cagtttcaaa
      421 tattgggtgg atactttttt ttctgttgca attaactaag aaaaatattt caaagccgca
      481 taattaaagg ccagcgtttt attagggttt aaaatagtct ttatgaaatc tactcctgcc
      541 actggtaatt acaatgtaca tcttaatata cctctgctag gcctgagctg gagataacag
      601 tcctgtgtgt attgcatttg gcttgtgcat agaaggtaaa atcctttatc ttatctcaat
      661 ctccacacaa caaccagcct ctcttccaat tcagccctaa tcttcttagt aaataatact
      721 gatatttttc accataacaa aagtggagct gccagattca ggctgataac acctctcatt
      781 tacacaccat tctctgtcaa aatctgcctg attttcctta atctctttaa ctcatcaaaa
      841 aatacttttt tacattcagc catggtaagt tccttgctac caaataatat tattatacat
      901 aaatctgttg actacagctg tctctttgga tagatactgg tactcttctc tttcctggct
      961 tctttccttg aatgatgacg aattcttgtt gtcccattta attttgctga aaagtttgtt
     1021 attttaacaa aagaacctac aggagagttt aatcgtgccc aaaaggcagc ttt
//
LOCUS       KCLA01002554            1037 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41555upu ultra-conserved element locus uce-4605,
            sequence.
ACCESSION   KCLA01002554
VERSION     KCLA01002554.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1037)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1037
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1037
                     /note="ultra-conserved element locus uce-4605"
BASE COUNT          257 a          227 c          327 g          226 t
ORIGIN      
        1 gtgacaggac gctgcttaga aaggcaccgc tccctcgtta ggcagcgttc gccgcgtgaa
       61 aaggacccag ggtgtttgtc gaggcgaagc tagacaagcc gtggtcaaag ctaaacagag
      121 ctgagagcct gaacgcacgg cgctgcgagg cagaagtagc ttcagagcag agagtttcga
      181 caggcaggtg ccgtcctgtt gggcacagac cagcggctgt gtggctgaag tgtgaataat
      241 tcgagcaggc gtgaagaccc ctgcttgccg aggagaggag acgccaaccc tgccgacgtt
      301 tgcatcagcc ttaaagaaca atgtgagccg caggatttga aagagctttg cagatgcgct
      361 ctctttaggc agggagaatg ctcattacat gcaagacgct cgcgtggctc gtggcgtttc
      421 accgaggtag aggttggcga gactgacgtg tcgggtaaag tcagagcggc taccacgccg
      481 gtggtggagc agctgcataa taaaggatgg gaagaattgc gttaggcatg cccacctaac
      541 ctaacttgaa tcatgcgaaa ggggagctgc tggaattcag atagactctc tggttcccag
      601 cagtcggcag taatagaatg cgttcaggaa gatgacagat gcaggggaaa gatgctgctt
      661 tgcactatct tgatttgtta cggcagccaa cttattggcg tgatggagtg acggggaaag
      721 cagctggcat ggaaggtagg attatcaaag ctattgcgtc ccactgaatg taattaggaa
      781 ttgaccatga caaagcagat gctccggcga gctgccgccc atggcagagg atttgttgcc
      841 gaggtctcga aactctaaaa gcgacgttcc tcgtgcagaa tggattttgc agtttcattc
      901 acgctcgtgt ggctctcttt ttcctgctcg agctcgggtg gggggaatcg ctggcttgcc
      961 ggagcgttgc gttgagatga ggctgaagga taaagtgttt gctaagtctg tgaagcctca
     1021 ggtagataga aacaaac
//
LOCUS       KCLA01002555             825 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41571upu ultra-conserved element locus uce-533,
            sequence.
ACCESSION   KCLA01002555
VERSION     KCLA01002555.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 825)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..825
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41571upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>825
                     /note="ultra-conserved element locus uce-533"
BASE COUNT          268 a          174 c          160 g          223 t
ORIGIN      
        1 ttaaaccctg caaggcaaag agaagataaa aagcttaaaa atcaatcaat ttaaaaaaaa
       61 gttgtattga ttccaaaaac ttcagagccc gtaccatgag ctttaagcct ctcaccaatt
      121 gtatggcacc atgcaggaat ccgccaaaac aacacagttt ggtgctcatt gtatcctaat
      181 taatactata atgagtttcc ttagatagcc aaatccttaa tcagccctat caaaactatg
      241 tctactcaga gaaagacttg tgttaattct gcttaattcc tgacagtggt taagcaccat
      301 taatactcca taatttcatt gtatgttatt gtaatcatat cagcatatat ctcagcagct
      361 acagtaggct cagtaggctg ttcatgaatt atcagtcacg tggctctgtt tcactaagag
      421 actatcttcc atcacagcca gacctcctct gccctcccca cagtcagtag cctaagcagg
      481 tattaataaa ggtctccttt ttaaaattgc actgctctaa atggtcttta agggacccag
      541 cagtaatctc aagatcccta tattttagca ggaaggcagg acagaggaat taataagagc
      601 cctttttgtg taaactgctc cctgctctaa ggctatatcc tgatgtcagg gcgctaagag
      661 aattttaaat gcacaggatg gattgtttgt gttgcgaaag caaaacaggg ggcaaaggct
      721 aagagacttg agaaaattga aagactgcca gggatgctgg gatgcaaata gcaacaaaac
      781 agggataaat gctcctgctc acatatgcag gagtcctgca gaagg
//
LOCUS       KCLA01002556             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41587upu ultra-conserved element locus uce-814,
            sequence.
ACCESSION   KCLA01002556
VERSION     KCLA01002556.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41587upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-814"
BASE COUNT          165 a          134 c          122 g          152 t
ORIGIN      
        1 ggggaactga ggggtggcag ccccgggtgc tgagccctct cccgctgcct gcccactgct
       61 gctgtcagct cgctgcctgc actttagctg tctctttccc agtccctacc ctgtcagttt
      121 ctgggctgcc aatttcaact tgaagcttga ctgggctgat ttgatgcaaa tacctccagg
      181 gaaaaccctg aaactgatga acagttatgt caagtcgatt ttgcaccatc gggaaaaggt
      241 aacctctgcg agaaaaaaaa acaacaaggt taaagagaca agggcttttc acgtgtaata
      301 ccactgctgc acatctcgtt cactgtttac catccctcag aaattgtaac tgtcagaatt
      361 agtcctaatt gcagatgcga aagctgccat tataataaaa acagaggcag tgcaggcatt
      421 aaatgtagca gcctaatttg tgagactact gaaaaggtag agtaaatgaa tatttcatta
      481 ctttaattac cagggactac tcttttcttg ctgtcttatg ataagtgttg ctgtaactag
      541 caacagcaaa catccactaa aacataaagt gca
//
LOCUS       KCLA01002557             966 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41602upu ultra-conserved element locus uce-2733,
            sequence.
ACCESSION   KCLA01002557
VERSION     KCLA01002557.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41602upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>966
                     /note="ultra-conserved element locus uce-2733"
BASE COUNT          306 a          199 c          160 g          301 t
ORIGIN      
        1 aggctgcttc tgaaaaaagc ttcactcctt ttgcaaaccc tcttgctgga tgtgagtcta
       61 gttggcaaga taaatttcat ccctcttgtt tcaggaaaaa aatctagcaa ttttgatcaa
      121 ttaaagaaaa actgaaggaa tacaatcttt gacagtattc tgcaataaca gccatactta
      181 caagcacctc agttcaaata gctctgaaag agtgaggact gcatttggag ctgcttgaat
      241 aacatttgcc ccacttatcc tccatttcaa tttaatattc gtagtgctag tgttgcctat
      301 atcatcaatg tcaaaaacta aaaagtctta tcttcaactt tcattccaat tcttcaaaag
      361 agctttgaat ttgcatctta ctctagggaa gatgtagttt aaaaacattt ttgcccagct
      421 tgctccatta atttctgagg aaaatgcacc tactgctgtg aatatgacag ttctcaacct
      481 tggtgttttt ataggatgtc cctccccggg gaacgaccaa caccattctg acttaccctg
      541 ctggaactgc acctcctgct gggtaatcag ctactgcagc actaagggag agacctcagt
      601 atgattaaca gaatgcccct tgtgaatgct aaggaaaagg agaacagcaa gttttctagg
      661 ggaaaaaatg ctttcagtaa tcatctattt tcagttcaat cagctcattt acagttgctc
      721 aattaccaga tgcacttagt attttataca atgcagtaag ctttaactta aaataatatt
      781 catcatacct ataaaatata tttttctccc aattacttct gtgagtcaag aacaaaactc
      841 attttgtaat gattatctga ctcaagtaaa gctgattttc tattactata ggccaaagcc
      901 actgacaagg gcacaaaaag gattattttt cagcagtttt cggctcagct aaatcagcag
      961 ataatg
//
LOCUS       KCLA01002558             906 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41618upu ultra-conserved element locus uce-5842,
            sequence.
ACCESSION   KCLA01002558
VERSION     KCLA01002558.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41618upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>906
                     /note="ultra-conserved element locus uce-5842"
BASE COUNT          283 a          174 c          219 g          230 t
ORIGIN      
        1 gctctgccag ggagctctca gcatgaaaca ctatgatagc aaaggtcttg aatgattaag
       61 attcttgaaa gccttggtca gtatcagaga cagtttccaa ctgggcaaag tacaatattt
      121 tccctctgct ttttatgaat ggctggatag gattatgctg gagtcagagt cccctgcaaa
      181 agccattcat aaaaataaga acaaaacaaa acaaacacac atacaaaact ttctgagtcc
      241 agtctggagc cactgggtgc cagaggctgg gaaaacatgc tggcagctca agccccagct
      301 atcactgaaa gtattcaagg ggctttttgg tggtctgaaa agtatgaagt gctatgtaga
      361 agggcagctg gtagaattac tctgacacat actaggcaga aagccagagc tggcctggtt
      421 tcagacattg tctttcctct cattgaagtg tcaggaccta attcatggaa aatttggtga
      481 gttggcagct ctttcagaag atttcattga gctacactgt gtgtgagtca catgaatgca
      541 gagtgcacag ccaaaaatac agggggattt ctgagcagga caaaacagtc agcctctaag
      601 aatgtctgca gatttcatgt agtttgggac taaacatgtg tacaggtgta atcaccagga
      661 aaaaaaaaag aacatcggga aagcactagg gttagatcac tgaacaatga gttctgtaat
      721 gatgaggaat tcctttgaaa caagtcattc ctttttccaa gggcaccaaa tgtctactaa
      781 tgtgtgcagg gctggcagtc cacctggaga aggcatcagt aaaatgtgtg ccttggtaac
      841 agcttctcca ttgcaacgga atttaatggg aaagggtgca acttgaagtt taaggattga
      901 cccagt
//
LOCUS       KCLA01002559            1016 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41634upu ultra-conserved element locus uce-238,
            sequence.
ACCESSION   KCLA01002559
VERSION     KCLA01002559.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41634upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1016
                     /note="ultra-conserved element locus uce-238"
BASE COUNT          260 a          199 c          209 g          348 t
ORIGIN      
        1 aggtgctctg cagtcagcag ccatgacatt aacttccgtg ctcacagaaa atcttctgtt
       61 aatttattaa ctgaatttta agacagaaca ttagtccaaa aacggaagtg ccttctgtct
      121 gtctataaat agtagcaaaa aaaagtctct gtgtttcgga ggtctctctt tgtatacgga
      181 gtgagacctg gttctctcag cacctggatg gctccttttc tgctgatggt ggatgttatc
      241 catgcagatg tttggtgtga atcccaggac ggtagagcca ctgcactgag ccgtgttttg
      301 cattgcctat tctgttattg cttagcatgc acaagggtag agttaaaatc tttattcatt
      361 taatttaaaa atgtttcttt tgttctcctt atcgtgtttt ggctttccca aggatatatg
      421 ccttgaacgc aaagtcgcat gtgcattact aattgtgtgc cattgtattt acagttccta
      481 gtggtggcac tgtgaagcta ctaattcttt tgcttcactt gatgtaaaat aatctgagtg
      541 tctttgatag cagcgaaaca gtattaattg ttttgtacat ttcttggtca ctcttcttag
      601 gtggtcttca taatctatta gaactttaag ccagattttt gtaatgtcat gcctccagca
      661 gcgattaaat tggtaattaa tgaacagtcc ttggcaacat aaaccacatc ccgttaattt
      721 tcccttttga gtttttagaa tttgtcgtct ctgtcagaaa gcattgcgcc acctcgctat
      781 ggccccttgg catgaaacca caacggcttg attctttgca gccattagta gatcagagca
      841 gtaatttcac agtattttgg tcagggtaat tatagtacca agtaccaagt agagttggaa
      901 attcacacaa gaagtccaga aataccaggt gagcttcctt gtgttcactg agacgttatg
      961 attagtttaa ttgggctttg tttgatttca gccgcagaga ctctttgtgc cacggc
//
LOCUS       KCLA01002560             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41649upu ultra-conserved element locus uce-3602,
            sequence.
ACCESSION   KCLA01002560
VERSION     KCLA01002560.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-3602"
BASE COUNT          262 a          146 c          160 g          268 t
ORIGIN      
        1 gtaaggagca aggaaagctg ttagtagcct cagtgtgcat ttcataaatc caaagatttt
       61 ttaattcctt tatccttttt cgtttagctt ttcactatat cttaaatgct ttatttttca
      121 gaggagagat aagacttagc tcttcacata aaactacagc ttagccatta cttagttttt
      181 ctctgttaca gaaaaggtcc tgtctgtgca cagatgtctc agattaaatt gtatctcaca
      241 gtccttacag tgctcagtac tagatgaact gccaaaaggg ccgtaggcaa gaactaaatt
      301 gctttggttt cagtacacag tgaatttggc tcagacaagc tgaatcagta cattaaatgt
      361 gaatccctca cagatttgaa agcagccttt agcacaatta ttgactgtga gtgatgatta
      421 tgtctaattg aaggagactt ttgctacctg tagctcagtt ggagtccacg agagccacag
      481 caaggcactg catcttaatt caatgttcca gcttgaaaga agcaattgaa cctaaatcct
      541 gaagtgtata cacatggtcg ataaacttta ataaacttta caggttcagt aactagactg
      601 agtgtatata attcaatttt ttaattcagg aaaggaaaat agctaacaag tatgttaggc
      661 tacaataatg tattagttct tctcatgcag aggcctttct gaaaggaaaa ggtatagttt
      721 catgcttgtc tttggaacaa gtcataaatc tgccatttat atgttataat aatgctctac
      781 aggtgggaga tcactgggtc atttgagtat gaaccaactt ccagtaaata tgtgag
//
LOCUS       KCLA01002561             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41664upu ultra-conserved element locus uce-1678,
            sequence.
ACCESSION   KCLA01002561
VERSION     KCLA01002561.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-1678"
BASE COUNT          242 a          149 c          118 g          227 t
ORIGIN      
        1 ggagtgactt tcaatcaggc atttttaaat tgtttttaat ttatctaaaa acaagctaaa
       61 gagtttaatt aacaggctca gagtaatagt tacaccattt ttcctctgct atcagctttc
      121 acttttattt acgatgggag tcccccttgt atctcctttc ccacagggcc cactatcact
      181 aatatttctg tgatctgtga ataaaccaaa atttaaagtt agtccttaca atcaatgcaa
      241 attaatgatt tcttaaatat ttcaatcagg aaaagcagct ttgtagttga aaatcccatg
      301 ctggccttag agtgggagtt tttccagcct ctgcttaaat ccaaaaaaat actgcaatct
      361 tctggcacag gctcactgta atgctttaaa aacaatttag caactgtcat tgctgtaatt
      421 acagtaacta attaccatcc ttagcaaaca aatagcttaa cataatacgc aagccgaatc
      481 aattttgaag aaatgcaaat tccgaaagcg aaaaagggca ttttggcaaa cctgaaagag
      541 aagcaggaaa ataatacact ttgttttatc tgcacataat tcccagggaa tatcatatca
      601 taaatatttg cattcagttc ttatcaggac atttgcattt gcttcttatc agtctgcagg
      661 ccggactctg ccagatagag agtagagctc cacaccatgc acatatttct aatgaatcac
      721 gtctcaggcc gagaga
//
LOCUS       KCLA01002562             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41678upu ultra-conserved element locus uce-4472,
            sequence.
ACCESSION   KCLA01002562
VERSION     KCLA01002562.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41678upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-4472"
BASE COUNT          259 a          200 c          183 g          261 t
ORIGIN      
        1 ggttcagtaa cgagttcatt cagaaaatca caagggggtg tgacagctgg tgcgaggaga
       61 agcttgtggc aatattctgt tcagaatggc atgatgaaaa aataataata aacattaaca
      121 gtgggttctg gttttttctt tcccatggcc taaaccacag ttctctggtc acaggccaaa
      181 ccctgacaaa ggtccaaggt tgaaaagggt ttctttgagc ctgtcttcct agtgtaatta
      241 ttgtaggttc agaggaacca gatctggagt gttgtaaaac tcaacacaat gaacttgaca
      301 gacagccaga tttctgtttt cagccagttt agggttacta taatctcatt attatacttg
      361 aaagacgaca agtaatagaa tctcaggtag ccgttctgtc tttactcagc cgcatcttct
      421 cttttatgcc gatttccctt gattacctga actagtgagg ctcagttttc aaccacttat
      481 cttccagaaa taatcatctg atcagcctta caaggttctc actgcactca atggttttaa
      541 tgggtcaagc gttaaattaa ccctttaacc atatcccagg agaatacaaa acttaataaa
      601 acccagttta ctagtcattg ttaattttgc agagaagcag ttcttagcca gctttgccta
      661 ttccctctac tcatgtcctg tctcactgca ccttggcact cagtaacacg tgaaagcctt
      721 ttaaagggaa cgttcttctg tttcttactc ctacaaatgc ataaaatgaa gccgcaggag
      781 aaatgttcag gatctggagg ctcctctggg aggaagctgg gggcagaagg ccaagcatct
      841 ttccacacag ccagcagaaa tatgccttct gctctggctc atcccaaacc tagagagtca
      901 aga
//
LOCUS       KCLA01002563            1094 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41693upu ultra-conserved element locus uce-2453,
            sequence.
ACCESSION   KCLA01002563
VERSION     KCLA01002563.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41693upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1094
                     /note="ultra-conserved element locus uce-2453"
BASE COUNT          303 a          248 c          266 g          277 t
ORIGIN      
        1 gctaacctgg tgttgacttc atcttgctca aaaattaaag caaaaaagag aggaaaagga
       61 gagaaagaat aagaaaaagg aaaaaaaaat aaactaacac tgaatgcgtt tgagtcacag
      121 aggtctacgt gaacagagtc ttctgctgat gacctaacgt ggcagagagt gcatgtggaa
      181 atggcaggat tacagtggct ttcccagtgc acatcagacc attagaaccc tgtgtattta
      241 ttactgtcat ctttatcctt aacgcgtact cgacctctgc tggtgctcaa ccagattact
      301 aattgggcac gattcaccac agcgtagcgt agtaaaagtc cccgacgcag tgagccgcgc
      361 atccgggtta ctacggatga ctagcccgtg ccgtcccatt attcagcctt tcctcgttct
      421 ccaaaaaatc tgtcggaaat aaaagagtcg agagaagaac cgggtaagac tttggcactc
      481 tgcatggtat cagtccaagc tgatgcaaag agtgattgtg aagtgttttc ttatgcttcc
      541 cgcagtggat tcactattga gttggcttcg gcgttcacag ttgtggtagc ttccaatgtt
      601 ggacttcctg tcagtactac acactgcaag gtatgccttt gcccagcgac tgcagtcaag
      661 gcagtctgga ctgttcatct taaaattatg ctgcttgaac cagtagataa tggcatggcg
      721 aggggaaaac agcagctcac ggaggacggt caggcggggg tgcgtccgcg cacctcggtc
      781 atgccagcaa caccggaaaa caatcgggct tcccattgga gttgacgcag taaagtcact
      841 gcaattgggc acagcatgaa ctccacagtg tggggaaaga aaaccagtgc ttattaaaac
      901 acaacctcta aagcaaacaa ttacaaggaa gaaccgggtt tcctccgacg gtgccatttg
      961 aacctggtcg ggtagcagtt ttcctttgtt cagaggctgc gcaccattcg tcatttagag
     1021 ttgactttct tgataagtgc atggcatggg atttcctgca tttaactctt ttactacagg
     1081 ttttccatct gtct
//
LOCUS       KCLA01002564            1075 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41723upu ultra-conserved element locus uce-3659,
            sequence.
ACCESSION   KCLA01002564
VERSION     KCLA01002564.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1075)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1075
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41723upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1075
                     /note="ultra-conserved element locus uce-3659"
BASE COUNT          338 a          196 c          214 g          327 t
ORIGIN      
        1 ccaagatggg caaaggaaaa ggagtgggca gggggtggct ttcgtgctcg ggggtaatcc
       61 attgttccat atgttatgct cacctatctc agacaagaga ttttgttttc ttttgaagaa
      121 ttctgcatga gtttccatca gaactaggtc ctgatgcaag aaatagtagc tgtgactttt
      181 aaataattag cctcactaca ggcaccattg tggcaaccag cagtgttcta ccttaattcg
      241 ttttgacaat gcattctccg cattacccag acttggaggg tgtcctcaaa ttattcaaag
      301 ctaggacaat acgcatagct aagaaaagtc cagaagcagc caaacaggtg tgttctcctc
      361 tgaaaaagcc tttttagatg aagacctttt gtacgctagt tttatcctgg gcccctttta
      421 ggggccacac ctgagagaga aagtgaatta tcaatgacat ttttttaaag aatcagtggt
      481 ttaacactaa tttctaatca gatcctacag aaaggaacag ctcgcatggc agctgtactt
      541 ttcccagggt taattacctt tcactgctct ctactaatga gtcagctgtt cctgtcatca
      601 cacaactaca ctgtgttcat ctgtagctct agctgtggac aaacacagta gctagagccc
      661 tgtttacata ttggtgaggt ttgttgtgca aagaatgcgc aaagcagttt taaaaaaaaa
      721 caagtaaaac tccttctatt ccaacatctc ttttcgtgga aaaaactgta tttgtaatgc
      781 caacacaatg ttctcaaggt tagtgaatta atcaacaaga ggagaaatct aagcacatga
      841 aaactaataa aatttttggt aatgttgcgt aatagtttat ataaggaaga ttagactagc
      901 ttgtcttacc cgattgttgg gtgaagatgt ttatttataa cttgcagatc tatgaagtag
      961 aaaacttctt tataaaatat tgttttaagc atagaacaga tactagcaca aaaccgaagg
     1021 cacttgaaag agtttgtatg atttttatgg taaaatctaa tgagacaatg attta
//
LOCUS       KCLA01002565             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41738upu ultra-conserved element locus uce-5433,
            sequence.
ACCESSION   KCLA01002565
VERSION     KCLA01002565.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41738upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-5433"
BASE COUNT          183 a          167 c          157 g          169 t
ORIGIN      
        1 tggaccttgg gttgtgcaca gggtgcaacc cctctctgct accacctgaa cgttaaaata
       61 cgtatgccct ggctcctgat ttataagatc atcgacagac agtaaaaagg acaggcaccc
      121 atgaacgggt ggagcaacgg catgcccggc gatgcctcct cgagactaaa agaggaagag
      181 ctacggattc ccacggattg cagaccgaag acacagagcg agcgtctgcg tgcagcgaat
      241 ctgcaatcac caccccacag cgcaccccgc cgtagagcag ccatacatta attagagcgt
      301 tccgcagaca ccgcaatgtg ttacactcac ccaagtgaat cttcattttt cacaggcagg
      361 gccttcctaa ttaaaatcag ctttgcaatt aaacgtggaa aattgcgttc aacttgcaag
      421 cgcggtttag aaactattta tttttagggt gttttatttt gatgcaaatg aattctccat
      481 caaagtgaga ccagggaaag ggaggtatga ggatttctct tttttgtatt atggatgctc
      541 ctctcagttg caagttgcaa tgctccacta tctctctgcc agtacctggc gccgttccaa
      601 tgcttttagt gagtgctatc tgtcaaggca tgaataatac agcccctagg ctgttggcag
      661 aatccaaatg aggcat
//
LOCUS       KCLA01002566             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41754upu ultra-conserved element locus uce-3797,
            sequence.
ACCESSION   KCLA01002566
VERSION     KCLA01002566.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41754upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-3797"
BASE COUNT          336 a          181 c          187 g          241 t
ORIGIN      
        1 aagaccactg tgatatttat cttatctcac ggcacacttg aatgttggca ttaaagagca
       61 ggtaattctt cacaagataa actattcaaa actaatgaga aatcaaatca aataaaaagg
      121 gtcaaattct gtgaacgtac ttgacatcat cgaaggcact catctgcagc ttcaggagat
      181 ctgccacttc ttttattaac tccaagccct tttccacact cagggggctg ttgaaaggga
      241 gcaagaaaac agagcattac gaaaatggaa ctcatcaata cttgagagtc taaaagtccc
      301 aaaagagtta tcaccttggc ctctttgagt ctgaaagcca ccactaactg tattcctgtc
      361 acatagcgat cgtgatatcg ggggaattgg gatcaggtgc ttcttcaggc atgatgaatc
      421 acctgaattt tccagcaata agacaaacaa taaggtgtaa atggaattgt taggaagtgt
      481 aatgggccca tgatgcagca accagttcat ctcagtcctc aataaaaaat gtaataaagt
      541 aaaaggacag aaaaagagga aaggattgac gagacaagga gggaaacaaa caatgaaagt
      601 caaattgcag actcggtatc gaatggacag gggaaatgca ccctttaaaa ttcattatat
      661 ttaaaatgaa acttcaccca gtgaaaggat caaaattact atggatttga aagtaaacaa
      721 cggagcaagg cacacagtcc agaggacact gattagcatc gcaggattta ctttgatgca
      781 tgcacgcact gctgacaaaa cctgctttaa ggctttttaa cctttgtcaa tgccacattt
      841 ccatttttta atttagaaaa caggttgtga tccagcctaa cactgctatg atttcacaaa
      901 gcacttatcc agatgcaaaa gttatatttg caaaaaatgg aggtt
//
LOCUS       KCLA01002567             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41770upu ultra-conserved element locus uce-3857,
            sequence.
ACCESSION   KCLA01002567
VERSION     KCLA01002567.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41770upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-3857"
BASE COUNT          238 a          122 c          117 g          225 t
ORIGIN      
        1 ctccaaggct gtcagtaaaa ccaaatgtta aatggaaaat atttgccagg atttaaaatt
       61 agacctacac attacttaca gatgttccaa tgaaaaacac ttgaaactca accacataga
      121 gtaataaacc ccacaatggt gtattttttt tatacttcaa gttaattttt attatataag
      181 tagccatacg aagaagccat tgcatactgc ttaaattaaa tgtggaagaa tgaaatcagc
      241 agtatccctt tacagcatat ggtccagcaa atcaaattat aaagctttcc acatctcatt
      301 aactgcaatg agtacagtga gatttctaat aagtcacttc tttttcatgt gagaggtgag
      361 cagtgactta ttgtaagtat tctcacagga tgacccttgt gctgaaatta agaactaatc
      421 taaaatggga aaggtcatct ggtcaagtct gatcataaca tttcctcgtt attgttttag
      481 ttggcattga actacatgct ttcctggtgc accagctgaa aaatgctttt gataatttca
      541 ctgacagcga gtaacccaca cattgctatt taacgagttt gggctggatt agctgacaat
      601 aaagaataca gtataaatgt ttttatggaa tgaatttttc agcatgaaaa tttcatacag
      661 gcatacttaa ctaatttatt tgcatttacc actgggatgt ca
//
LOCUS       KCLA01002568             970 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41786upu ultra-conserved element locus uce-3752,
            sequence.
ACCESSION   KCLA01002568
VERSION     KCLA01002568.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 970)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..970
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41786upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>970
                     /note="ultra-conserved element locus uce-3752"
BASE COUNT          316 a          207 c          165 g          282 t
ORIGIN      
        1 acaacaagag aacatactga gttaaaaaag cctgccatag ggttgtattt tactccaaat
       61 taagagatct cattgccaag aaaaattata gctactctgc attaccctcc aaggcaccca
      121 gtggcttttt gactatcatg tgcatctctc tctgaatgcg cccaatgcat gcaatgatta
      181 tacttgcttt aaggccaagc aagaaggcta tgagcagcac atccagctct gctttgtttt
      241 cctcaagtga aatatgtatt taaacctaaa tactgaaata gcaccaacta tttaaaatat
      301 gttatagttg ctgagttttt ccacagtgcc ggtttgtttt ccattctccc catgacatct
      361 cacaactcta agtgctcaat gacagcctgt agaggttttg ccataatcca cctttatcca
      421 ttaacagaca ctcaatcact aaagtgctta ctagactaaa catatttatc caaccaaatc
      481 acactttaca atgcaaaact gccaatcagg cttgggctat taacgaggaa ctgctttaag
      541 gggattttgg tgtttgtgct gtgaagagca tgcttacctc caacaaacca ctaaaccaaa
      601 ttaacatagc tgtatcctca taaaagaaac cagatatcct gttgtgaaaa tagaaagctt
      661 ggtaggacag ggctcctttg atggctaaca gtgtggcaga cgaaggcttc agactacaaa
      721 tctggttacc acaggctcat tacaaaaccc tagcattaag cttttgctaa ctttaaaagc
      781 aaaataaaaa tgtatcattt gggtaattca gtaagtcatc aacttgctcc cttgctatta
      841 taattgcagt aagtgccgca attgttggat aaggctcctt aattgtaatt gttcctttac
      901 ccaagatcat gttgtaaaaa agcttgcatt agccaaaata aaatccaaga gacacaaatg
      961 tggtagtaat
//
LOCUS       KCLA01002569            1134 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41816upu ultra-conserved element locus uce-7227,
            sequence.
ACCESSION   KCLA01002569
VERSION     KCLA01002569.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1134)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1134)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1134
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41816upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1134
                     /note="ultra-conserved element locus uce-7227"
BASE COUNT          274 a          265 c          239 g          356 t
ORIGIN      
        1 ggaaccattc ttttcaaata acttctgtcc ttgagcatga acctggtttt ttttagagaa
       61 gtgtagccct atgctaggtt aggtccaaat cctatctagt gcacagcagt tcaacaacat
      121 cctatgggaa aagatgacag taagttagca ttaaccaaca ggtacaagta ttttatcttc
      181 agcagactac cacctgagaa aggttcacca gttttcagcc actgtgatgc acaactcctc
      241 ccaggcagtg cctctgtgtt tggacagaga tgatcataac tgagaactgg aaaactgagt
      301 gaagactgga tttcaaaaga gagataacag cctcttggag tgccaagaac ttactcctag
      361 agcaaaccag acatctcaat tacatgcaat gcaaagattt gcttacctgt tcattaggct
      421 caaagtttct ctcttctttt tcggtccttg cagctattaa ctttgtgcta ccggaagggt
      481 ctgtcttact gtccaaccgc tccagttttg ggggtatgtc tggtaaacca gtatctttag
      541 tatcatcttt atctagcaag tagcgaagta gtgcgttatt atttttctta ggacttgctg
      601 gctcctgttt aacagtcacc tctgaaccag aagttgtgct actggactcc tggttcagtt
      661 ctttgcctgt ggcctctgct gtgagcttgg ctaaatctac aggagaacta ctgtcctgca
      721 atagtctgtg caaaatttta tgcttctcct tgagtgaggt cccatgtgcc gaaccagacc
      781 caggcaaccc tcctgtggag tccttgccaa cgtctgccat ggtactggac aaaggcgaag
      841 gctccatctg atctgatttg gtggttagca attgtaagag ctttgtctgg ctttttccat
      901 catgcagttt attctgtcca tcaggtctca cgccactgac actcagtggc acgttgctat
      961 cgctaccatc tttctgttct cctgaatggc agttgctctc tgcttgtcca gttgtacctt
     1021 ctgattgctc tccatatagt ccaaagcagt ctttagagtc caagcttccc atcttgctta
     1081 gctgaggagg attcatattc acaggggaat tttgtaaatt tcccattttt aggt
//
LOCUS       KCLA01002570             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41846upu ultra-conserved element locus uce-6633,
            sequence.
ACCESSION   KCLA01002570
VERSION     KCLA01002570.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41846upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-6633"
BASE COUNT          222 a          203 c          171 g          234 t
ORIGIN      
        1 agccgagggg aaccgaaagc agcccctcct ccctcccccc gggctcccct cgaacccgct
       61 ccctgcagtt ctatccgtcg ttattgcaga cccagcctct tccaccaaac aacagatgca
      121 gcttctaatg caaatattgc catttccctg ctgaattagc cttgtcactt agcccagaag
      181 ctggcagcgt taagccagct tgcattttaa tttggccctg gagttactta tttcattatt
      241 gatcaaacat aatgctgaat caatgttcat cttgttacct gggccatttc catgtaatac
      301 agtgatagca ctgcctggag ttactcattc ccatcccaaa gtgactttac cataaaatca
      361 atgcttgttt gttactgata taaggcagca tccgtgggat gaagagcaaa taaagcagtt
      421 acgccatcgc gatctaaaag ttcggacgaa atatgcacgt gaatgaagac tttgatattt
      481 aaatgtcttt tatcagcatc aaaatcgtcc tacccaggcc ggtgggacag aaaatctcag
      541 gctgcaaatg acggggcttt gatactgtag gtgttgccgt ttgtaaacgc tacctgagac
      601 ctaatggggg atcgtttcta aaccagagta tcattacaca gcagatgtgg gctgtaagct
      661 cttccgggcg gggactgttt tggaaaaata gtaattaata caatagtaat taatgattgt
      721 gtcacaagat tagccttcgc ggagtgttat ctttgctgca gctgctgctc cttttctacg
      781 ctcatgttct cccctccagc taataaacta atttacaaat tacacggagc
//
LOCUS       KCLA01002571             936 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41862upu ultra-conserved element locus uce-6296,
            sequence.
ACCESSION   KCLA01002571
VERSION     KCLA01002571.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 936)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41862upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>936
                     /note="ultra-conserved element locus uce-6296"
BASE COUNT          248 a          193 c          221 g          274 t
ORIGIN      
        1 tgacaccatt gtctgaggaa tcgctcgggc tgtaatggtc ataatttatc ttttgtgcta
       61 cgtaatttgg agcagtgcag gccagggagg aacatctgca tggagggagc agcatcagtg
      121 cgtcctgcac ttctgcactg ggacgtgctc gaaggtcact ttgctcataa acttcgttag
      181 tgctgttggt tttattcatt atatttgaca tattaagctt ctgtatcttg gcataaagga
      241 cacaatattg cagcatattg gcaagctcat ttgcttttcg cagctagtgt tgtgtccaac
      301 gatgggtccc cagggagtga cacgtgtact gaggcggcag gaaaatgagc cgcagcagca
      361 ggtggccttt tgcagcctaa tgaacatggc aatctgttct gagcacggtg aggcttttca
      421 ccagacaatt aggcaactaa gcatgtaatt attcaggcca acaagaagag gctcttctct
      481 aatttcatct tttcattgct gtttactcac ccacactccc ctcgttaatg agagattttc
      541 cagtctatgc taattggttt caataacatt cattttgctt aaaagggagc gattctgtta
      601 attgagaagc ggaagcgtct tttcattttg agtgcgtcct gttacggaaa gctgaacagt
      661 ctcaacaggt ttgagctaat gaaattaagt tacacagcca ctggtagggt aatagaaaaa
      721 aagttagtta ttttcagtag agcatgtgct ataggtcccc aacagttaat ccagcttgtc
      781 cacaagagcc ggcagagaaa gcagctttga atgaacggcg ttgctccctc agatccactg
      841 tcgtaagtct cagggtggtt taactgctaa gccttccagc atgacctgaa agtgtttaat
      901 gagaatgaga cacgtttacg gaaacactaa ttcttt
//
LOCUS       KCLA01002572             932 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41876upu ultra-conserved element locus uce-1299,
            sequence.
ACCESSION   KCLA01002572
VERSION     KCLA01002572.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41876upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>932
                     /note="ultra-conserved element locus uce-1299"
BASE COUNT          280 a          153 c          205 g          294 t
ORIGIN      
        1 ttttttagcc tcaggcttgc agttgttgag tgtaggtgaa tcttcaccaa attaacaaag
       61 tctcactact ggcaggtttt actctttccc acataaaagt gccagtgaaa cgagatgaac
      121 acagttctgc gtgcagatag gcatgacctg acgcagtgag gaattagaag gcagtaacag
      181 aaaggaaatg aagagtttat tgtttttatg gctctaatat ccattaaaag ttagtaacac
      241 agcaggtgac agtttgggta agcgtaaagt gaatgttttg aaataaatag cagttgggtg
      301 acctgggatg tcagggctct agacaagggt gtgtgtttgt caatatatcc tacatgtttt
      361 acagactcct cggggagcag gggaagatac agtttcacct tttctgtgcc aaaacatttt
      421 aattatatct tcttccaagt acagcggttc agtaaccaag gagctgacat tgatgcatgt
      481 gttgataaag ctgcaaacat tcaaaatgag attaacaaag attttgagca aagggtgaca
      541 gctaattttg cacagtattc tgcatctaat tcaggtcagt gtaatgatag aatattttat
      601 aactgttgtg tcatccagag ggactttcac gatgctttgt gtttttgagg gtctgtgtgt
      661 atatggaagt tcttaatgca tcactcaaac aggttataac ttttttattg aagtctattg
      721 gttgtagcca taaataggaa taaacttcag catttagaag caattttata tatccatcag
      781 cattcatcac cgtaataggt tccttttgtc taattcacct tgagactatt gacttcagat
      841 gtgaaatggg accaaaacta ccgtccccgt tttgctgcgc cgcttaatat ttgcaaagag
      901 atgggatgga aagttatatg aagtgcattt aa
//
LOCUS       KCLA01002573             572 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41892upu ultra-conserved element locus uce-2108,
            sequence.
ACCESSION   KCLA01002573
VERSION     KCLA01002573.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 572)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..572
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41892upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>572
                     /note="ultra-conserved element locus uce-2108"
BASE COUNT          186 a          105 c          121 g          160 t
ORIGIN      
        1 tccttcatac ataatgatct ctacttcatt aaaagcgtat taatctggtt cccggtctct
       61 tgggagacac cttaagatga tgatattgtg ggggtttttt ccccccgaat tgtttaaaaa
      121 aaaaaaattt ctagcagatt tggtccctgt cagtcagaaa taattgtgtt cttaatcttg
      181 tccctgatgg atgactcgga gttcagcaac gggccagctc caatgacaaa tacaatatta
      241 atattcatta actgctttga caatgctaat tttgatgcag tagtaaaggg ccttccaaag
      301 ttagcggcca aagcatcaga gctgcgcaag gtggcaagat aatttgtgct ggtttgctga
      361 gctgaaggct tttaaagtct atagcaaaaa gctaggtacc acaaacaaaa aagagaaagg
      421 gaaaaaagtt ctgaagcatt ggaaggcagg gctgcggaaa taatacgatc acagtccgct
      481 aaaaaatttg acacctctga tgcagtttct ttgagtgaaa tttctacaaa gttgcaacaa
      541 aaaagcatag catggtaagt cagcacattc gt
//
LOCUS       KCLA01002574             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41908upu ultra-conserved element locus uce-4687,
            sequence.
ACCESSION   KCLA01002574
VERSION     KCLA01002574.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41908upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-4687"
BASE COUNT          130 a          159 c          130 g          221 t
ORIGIN      
        1 ttaaattctg tgtttcttaa aattaatcag tctttcgtat cccaaactct ttacttttgt
       61 ggaattgcct gcttttgtca cagtgaaaac tctgaagaat ctgtctgatt ccaatactga
      121 ctactctttc tctctcactt tctgtatgtt cacttttccc acccctgtct tccttttctc
      181 ccttgttttc tttctcctcc tccttttggc ttgctggttc gtcagcccct ccttccttgc
      241 tctcttccct ccttgcagaa caagatggtg aaaggcagcc tcagcacaga gcagtcggag
      301 cgggggtgag gggggaagtg tactcctggg aatggaaata aaagcaagca caggtgagtt
      361 tgggacagtt tcaaggttca gtctgctggc ttctgtggct cctttcctcc agtgctttcc
      421 ttgttccttt gagaaataca ggtgggtctt gtaccttcac aggatccata atgtcttttt
      481 atgggttttt cccatttgcc attcagttaa ggctagcaac ttcactgttc tgtatttctg
      541 cagtgcagca gtagtgaaag gcaaagcttg ttaactgttc taactgcctg actgccctct
      601 aagctaacca gtggcagaaa tcacctttca tagtgtcacg
//
LOCUS       KCLA01002575             915 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41924upu ultra-conserved element locus uce-3013,
            sequence.
ACCESSION   KCLA01002575
VERSION     KCLA01002575.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41924upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>915
                     /note="ultra-conserved element locus uce-3013"
BASE COUNT          257 a          201 c          182 g          275 t
ORIGIN      
        1 gatctggaca cattcagaag gaatagtatg tcagcaggtt tgttatttta agtggttaaa
       61 caggaatggc tgtgaagagg cagccctgac ttttaactgt gtaaacccca atctacttct
      121 gttgtcaaaa ctgagcattg cattaacttt tttgaggtca tagtcagtat ttccaccttt
      181 ccgtggagaa agtacaaaat acacaaatga atcgttctac ctcattagaa tttctatgaa
      241 gtagtaattt tgatttcaaa gtgtaaaacg aagaacctgc aaaaccatag catcactgca
      301 gtgaagttct tggtaaacac agtatattga gatgatattg tgctctgttt cttcagatta
      361 aatatatctc atcctcagat ttatactggc actttatggc ttctgcaaat gactgtctca
      421 gcaccgcaaa gtaattccac cctgtcatat ttgtctttgg aaattgtaac aaattatggt
      481 gatttataac atcaaactca agtcttccat tttttcccca gatgggaacg tcgctgatgg
      541 caagatgctg ggccatccat ttatgctgtg tggagggtga cagtgaaaca tgtttcatct
      601 ctctggcctg acactctctt tccctttgag gggaggctgt cagcataact caagctgtca
      661 aggcaccttt gcaaggggcc tgaaacaaat ctaaagctct cctacctgca tgcctactaa
      721 tgaggtgtga ctctcctaga tgcctggcct cacagaatct ccttgcctct gacccctcac
      781 cgtttcgtcg cagtcaatag aagtcaagcc atcatctgtc tttgagtaag gacaggcaag
      841 atcagagatg gaaagtttgg aaaactcacg tctcatttac ttctgctttg ctgcaccctg
      901 tacaggaaaa aaccc
//
LOCUS       KCLA01002576             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41940upu ultra-conserved element locus uce-1026,
            sequence.
ACCESSION   KCLA01002576
VERSION     KCLA01002576.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41940upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-1026"
BASE COUNT          164 a          126 c          148 g          192 t
ORIGIN      
        1 aggcggagga gctgcgacaa gcgagagggg cccctctgca gggtcttccc taaggcctta
       61 ccttacttta gacagttgtc attatctttg tctaaaggtc atggctaaat tgaataaaag
      121 gaaagctgtg tgttcctgtc gatgcacaat ggcagtattg actttcctaa tccagtttgc
      181 tgaggggtga gagaattaaa ttagatatct aagcacagaa attgagagcc tttgaaaaca
      241 aagataagga gacagcctgt attttccttt tcctgggagc tctgggctca agattttgca
      301 ggtgtgtcat ctgatccatg gcttgcatcg atcaaaactg tgccaatgca tatttaatta
      361 gcaaggggac cctggatgca ttatggccat catccctata ttgaatggac tgtcagactt
      421 tctgaatgcg tccccacccc cccgcttcgt tgtttgggga gcttctgcat tttgtctgag
      481 cagctaaaag tttctttgtt tttagctgct gatgcataca gcaccactga ggagaataca
      541 aacaagtaaa gtcctaaagt gtttattttg tctaggaaaa agggctgaac caatttgaat
      601 cctttgggta acggattttt tttttccttg
//
LOCUS       KCLA01002577             997 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41956upu ultra-conserved element locus uce-5246,
            sequence.
ACCESSION   KCLA01002577
VERSION     KCLA01002577.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>997
                     /note="ultra-conserved element locus uce-5246"
BASE COUNT          282 a          189 c          213 g          313 t
ORIGIN      
        1 atgctttgac aggatcacga caatcagtga ctcttttcct ggtatgttgt cttttgagac
       61 tgacaaatta gcgtaggtgc agtagagaat aatattatta ggagatcatt caattttggc
      121 tgcaataggg tgaggaaatc ccttgttgtg ttgaaggctg catagtgaaa atgattgtca
      181 aaattatttt aaacagatta agccactgct gatcacttat tctctctgta ttgaacaaag
      241 ccttaggaac tgcctaagag caaaagactt caaaatcctc catcttttcc ttgagtaact
      301 gaaatgaagt ctgagctgga agataaggat gttacaaaaa gacacctctt cttataagca
      361 gaggagactt gaatgggtta agccatatct ggctgagtcc caacagacat aaaaatcacc
      421 tgtgcctgct ctgaaataaa tcagtgtcct tttctgctgc tgccgttgtc tggaaataat
      481 gcaaatgcaa tgggcctgca gtgacattgt gctgcactcg aaggatacac ataataaatt
      541 gtcccctaat actgttaaag agacattttc gtcttactca gtagcttttg aggttgaact
      601 gtgctactta ctggttgagg actgtgatgc ggtgccatgc tgttctgctc tattattcat
      661 tttgcctctt gtacacacat ttggttcctg agcctctaaa tgtgttttgc ctcttacact
      721 tggtggtagc atgtttgctc agggaaaaag ctgtgagttt tctttccact tttttgctgt
      781 tgttttaatc atttgtctcc aacagcagct ggaacaaata gtagattcat acaatctgcc
      841 tctactgcat tcatcactgg gaaaaatgca tggctgtgtt aagggaggac agaaagaatt
      901 tgtctgccca gcaggaagct gctgctgttc cataattgtt tgctaaaagg aagctgaaat
      961 aaaaatggag gtaaacgtgt atctgcacca atccaat
//
LOCUS       KCLA01002578            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41971upu ultra-conserved element locus uce-8017,
            sequence.
ACCESSION   KCLA01002578
VERSION     KCLA01002578.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41971upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-8017"
BASE COUNT          272 a          252 c          200 g          281 t
ORIGIN      
        1 atttatgaat ttcacaacca aatgctaatt tcataattga gccctctggt ttgaaaatta
       61 ccatttcatg cttatcgttt taaatagata gctgaaagca tttgccagac agtccaagct
      121 tgtatctgat aggcttgaag ttagctttaa ataaaacggt agaggaggaa atccaaccca
      181 ccgccaaaag cgaacttgtc cgtgttgcag tggaaggctt accagagcag ttactctttt
      241 gttgaactgg ctgtgcaagt caaccacgtg agcaaagtct tagcctgcca aagaggtggg
      301 aatttgccaa aatttagtag ctctgctcac tttccctttc cacccaggca tcaaggcata
      361 ggttatcagc ttatttttaa atagatgaag aaataaaggt aggaggttag caagggagag
      421 gagagaggtt gttagggatg taggcattta agcagcactt gagcaagaca agtgtgcctg
      481 ttttttctac agagtacagt tgacaaaaag cgtgccagcc atcatgagag caatggcttt
      541 gccggtcgca ttcacctctt gccagatctc ttacagcaaa gccattcctc ctccacttcc
      601 tccacctcct cttccccatc ctccagccag ccgacaccca ccatgtcccc acagacaccc
      661 caggacaagc taactactaa tgaggtatgt cttacaccac agctggctgc tttcgtaggg
      721 ttatagcagc attgcctagt agctagatcg caaaggaact ccagccaatc tcccctgctt
      781 tttttttctg tcacctttgt tcccatcccc caataacacc tttcagttct gtgtaagaag
      841 cctttaactc tagagctgtc ccatgccaaa cttgccagtt tactattttt gcttcctctt
      901 agcaagtcat taattgcatg gcattctgtg aaactaaacg tgactattgc gttctcaagc
      961 cagcgtcctt tttgaaaccg ttgtactcca ggagaggcta accca
//
LOCUS       KCLA01002579             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 41987upu ultra-conserved element locus uce-4587,
            sequence.
ACCESSION   KCLA01002579
VERSION     KCLA01002579.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="41987upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-4587"
BASE COUNT          271 a          155 c          195 g          282 t
ORIGIN      
        1 tagatgtatt tatcagggtt tgctggcccg ttttgatact tcctctgtaa aacaaaaaca
       61 ccctcagaaa tggatacggt agccaaaatt atattcatca aaaatttaag aaagggctct
      121 cagtgtttaa aaaaaaataa tatttttttg aagaagctga aaagaaaaag gtcttggaat
      181 tacaagcagt tagacttggg tttttgcgta atgactcctg gtatcccact gtgagaagac
      241 tttccccagc ttctcgtctg cattcttcct cgttccctgc gggagaatga gttggatttg
      301 tctgccatat tcacagcaat cgaggtgatc caggttgaaa gaaaatcaat aagatgtgtc
      361 catttatgcc tcacaaagga agaaaggtct aaagaacaga catgggacgt gattcaagca
      421 ctagagactt aataagactt ctacttgtgt ttgaagggga tggtaattta tattttactt
      481 tgaacttttt tttatgcttc ataactattg ggattcgggc tgacatggga agcaaggaaa
      541 agaaggtttg atgctgtctt agaagaccta acccatttgg gaaggccatg ctcaaaagtt
      601 caaaaaattt tgttttagaa aagattaaag agacatcata tcatcacact gatttatggc
      661 tattgataaa actggtttaa agtattttgg attggggtac aatgaaaaaa agtctttctt
      721 cgagaacagc tgcaagtttc tcattattgg ctgtcttttc tgtctgtttg atatcgtttt
      781 gcttagaaat agagaagcag ccataatagg taccctggtg ccacttgaag ctttgtcagg
      841 gcagctcccc aaaagtggtt gttgttccgc ttgatgtctg tcatgtcagc cacccgggtc
      901 ctg
//
LOCUS       KCLA01002580             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42003upu ultra-conserved element locus uce-7786,
            sequence.
ACCESSION   KCLA01002580
VERSION     KCLA01002580.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42003upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-7786"
BASE COUNT          239 a          109 c          109 g          225 t
ORIGIN      
        1 ttactgaaac aagcaccaca ttaaaaagta atgaaataat ctaattattg tgaacataaa
       61 attcaccagt aaggaatgga agcaaaaata aagctcattt aaatcatttc attacattct
      121 aagatgccaa ataatctgtg agtgttttct ttttagatga aaagaaataa aaatatcaga
      181 cagatgttgg acaaaccaca tttgagttct atcacacact ggcatttttc aaattatttt
      241 ggctcatcta ttaaataagg tgtattttgc ttgattttaa aagggaaaca tcaggaaata
      301 tttaaaggcc aattgctgcc aattaacttt gatcaggaaa agttgcattt gaatctttta
      361 gattcttttg cctgtctgaa ataacacact attctaaaat ctagcaaaac aacaacttga
      421 tgattaatgt gtgttggcag cttcaccaca agcttgctta acatttggat tttaaataaa
      481 ctgctttatt cgttatgatg ggaaagaaat cttactgttt catgtttttg tgtttttaaa
      541 atgtgatcaa aaattgcttt ttcgcctttt cagatgaaac agacaggaat catggtgaca
      601 gtctctttca gcagtttgga cggttttaga ccaatcttac aagcagtgcc aatccacagt
      661 ctacggagac taaaaaagcc ct
//
LOCUS       KCLA01002581             259 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42019upu ultra-conserved element locus uce-102,
            sequence.
ACCESSION   KCLA01002581
VERSION     KCLA01002581.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 259)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..259
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42019upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>259
                     /note="ultra-conserved element locus uce-102"
BASE COUNT           70 a           45 c           80 g           64 t
ORIGIN      
        1 aattataata aagaagaaga gtaggataaa aaaacaaaca aatggaaatg ttagaaaagg
       61 ttcgttaagg tagtttgtga ggggctcccg gattcgtggc tgtccaagtt agaggtcact
      121 gatgtcacta cagtgatagt gggattggtc aggtctgtta aagtggtcgc agtgccgggt
      181 ggagtgagtg cgccgctgtc tgctgagggc ggtgccggaa gtgaggtgcc atcagcttta
      241 tcgacacccc cattctcct
//
LOCUS       KCLA01002582            1031 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42035upu ultra-conserved element locus uce-5425,
            sequence.
ACCESSION   KCLA01002582
VERSION     KCLA01002582.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42035upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1031
                     /note="ultra-conserved element locus uce-5425"
BASE COUNT          309 a          190 c          229 g          303 t
ORIGIN      
        1 aatattactg tctctggctg caaaaaacaa gagtggtaaa tgttttatat ggaaaggtgg
       61 agcagtttag gaaaacaggt tatggaacaa cactctttag tcctgcagaa tgactgcatg
      121 cttcagcaca gatttctctg ctagttggat cccaggaggc cttattgagt gcagtgctgc
      181 tcagggagtt gcagctgtat aaagtcgggg agaaagagta gtttgtacaa attgttcttt
      241 accttggttt gggttcagtg tggcagctgc acttcgactt tgtgtgtgac agcacaaagg
      301 acagcaaaag tgaaaagcaa gtcagcaagt agagagacaa aagcaacgat cagctaatac
      361 agctccacat ggcctaacta atttatgaga aaaaacctgt tttgttcatt ggatcagcac
      421 tctgaggagg caggtggaat tgtaggaagt tttcattgag tctctggagc aactaaggaa
      481 gccactagag attcttctca gtttgaactt tatcagggtc tacgcttaat caatatggta
      541 ttggaaaaag aattaattac taaagcagaa taaaacagct gcattttaaa ctaaggatcc
      601 atcaattcag taatcttcca gttacaggct aggtgccgtg aggatcattt tgacttcatg
      661 taatgaggaa ctgagggagt ttcctcatga acaggctggg aattcacatt agcctatttc
      721 agctatttgt catcagtaca actcatttct ccccttctga attacaattt gtatttgata
      781 tactgtcaaa cccacaaaat tcccatattc atggaactga aagcattaat gcggaaatca
      841 ttgtcaccat gagaaaaagt cttaaccttc ctgagcctct ttattctata ggctgcggct
      901 cgagtggttt catgccggac atacctctat tgtgttcatt gtgagggtca gggacctgcc
      961 tgttgaagaa gcagtaattt gaacacagcc tgtaaatgtt tcatctgtaa tttccataat
     1021 ggtgaatttc a
//
LOCUS       KCLA01002583             834 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42049upu ultra-conserved element locus uce-7417,
            sequence.
ACCESSION   KCLA01002583
VERSION     KCLA01002583.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 834)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..834
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>834
                     /note="ultra-conserved element locus uce-7417"
BASE COUNT          176 a          203 c          195 g          260 t
ORIGIN      
        1 catgttgtgg agagccaaaa ttttagtgtc gagctcagca tcctgcctgg tgcggttgtg
       61 cagtcctagg tggtacttgc ggaagtgttt gatgagatct gtggggtcgt tcccgtagta
      121 accgtatcca cagatgttgc atttgaagtc ctgaagctct ggagacagag gcgccgtatc
      181 tgggttatca ttcaccaaca aatctgcttt agatttgttc agccttaaac ccccatctga
      241 aggcacttgt gggttttttg aggccatggg gaccgggctt gagccttggc catcagtttg
      301 accactttgc acttgcactg tttcatctga agcttttggc gacatctgat gctcctcgtt
      361 tgtctccgct gcatctcctg atggggtaca gaccacatct tgggtgtcat ctgcatctga
      421 tttctgagga gacttcaagg gctcacagat tcccccaaca gctggagatg agaaagccag
      481 catatttctg tctgtcacct catcatgagg gaaggatgga acatttcctc ccttattgtg
      541 gctttcataa ttgaagccag ccttttcact cagcactgag cttttcaagt cctttttaat
      601 gctggaagat ggctcttgga catgcgtgca aagctcctcc ttgttattta actctgccgc
      661 ttcaccctgg tcagtgtttt cttgcatctg ctctgtggaa aattcttttt tccttccaga
      721 ctcttcgctt tcagtacctg tagactcaag ggtctgtacc tcaccttcac tagcaacgtt
      781 tcttagaggg gggttctttt tccggaccat atctaccaca gaaaaagaaa gaaa
//
LOCUS       KCLA01002584            1068 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42064upu ultra-conserved element locus uce-6983,
            sequence.
ACCESSION   KCLA01002584
VERSION     KCLA01002584.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1068)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1068
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42064upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1068
                     /note="ultra-conserved element locus uce-6983"
BASE COUNT          293 a          226 c          242 g          307 t
ORIGIN      
        1 ggaaggtggg ctgtcttctg aagctgggat tgagggtgac ggtttagctg gcagaaggta
       61 aaagttgtga agaggatgtg aggctggggg agaaggagga aataatcact gaaacttagg
      121 taatgatttt atttatagtc tactgtgcac acatggctgt tgatgaggct accagtgaca
      181 taaatacact caagcgaaag atgtaagcga gtggatatat gtaaaggctt ctctgggcag
      241 tgccacgaat ttggacatgg accaagagaa ttatttatgt cccttgcaat ttccatgggg
      301 agcacaaagg agataattag accaggatgc atcacattgc tctttccatc ttgtgcgcat
      361 tcgtgcccac caaatgtgaa atgtttgcct tttcccctcc aatgtgacgg ttgttgaact
      421 tatttttagt gtcatttgat aagcctccct gctcgcagag agacatccca ctgacccagc
      481 cactggtcat tgtctatacc agttcccatc aaagcgggcg cgctttgtca ggtttcgact
      541 cgaatatcca ttttgcatct gaagtacagt atcgaaagtg actggatcat ttgagccttt
      601 ttcttcagct gctccctcct tcctccccca cagtgtttcc gctcacgcta acataatttg
      661 gcatcgtcga cgtgacacga cactggtttt tctaaaaaat tataatacat acattgtcga
      721 tgttttgtga tggccggcgc tcccataaat ttaatttcta aattgatggg aggaggtctt
      781 tttccactga cgaatcctat ccaacacaca gtgccccctc gaaaaccaag tatcatgcat
      841 acagtaatag gtcattcaat gtcaaaaggc ataaaaaaga tgagcaaaat cttcacaggc
      901 tgctgcttgc tgttgccttt aattatatta attaaacttt gaaattctca tgcaaagagg
      961 gttgctggct tgtgacgctg aagagccctt ggagacttgg ggggggtaaa ccctgagata
     1021 ccatcttagt ggctactgct ttttttaacc tagaaacaaa aaaaccac
//
LOCUS       KCLA01002585             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42079upu ultra-conserved element locus uce-1119,
            sequence.
ACCESSION   KCLA01002585
VERSION     KCLA01002585.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42079upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-1119"
BASE COUNT          221 a          150 c          159 g          178 t
ORIGIN      
        1 gatttgctag gggttttgct tatttattcc tttcgcttgc tcctctggct taaagatttg
       61 atgttttctt ttggatatcc caactggcct tggctctatt aaaataagga agaacttcaa
      121 tcaaaaagcc tctcctaagg caagctttct tgttaatatg cacccacatg aaaggctttt
      181 catcctatac aactacagtg tgtgcaaatt gcagggggct cattggcata aatcttggct
      241 gtgacctctg aggtaaactg gatttacatt acattctgac aagaattaaa tgaaggcctt
      301 gtggatatac gaacagcctt ctagactgca acagatgggc atgaatgtgc tccctaggca
      361 aactatcagt gacatctgtg tcttccaaat tctggtggtc tcagccaatt agcaggcaaa
      421 aaggaggaaa gaaaaaaaaa aattgccctc tgcacagcta cgccgaccag agcagaagca
      481 gaagtgcttc tgtttagaaa tgggatcaag aacagcctcc agcagcaagg aggtggtcag
      541 ccggctggct ggaatacaga ggtaccatcc cagggtaatg aggtagaaca gatattaata
      601 ttaacacaga acaaatgccc agcgcagcta agccccacaa tggatttaac tactacagca
      661 aagaccaaag ttttgtcagc ccaaaaagca gaggaggggt caaagtga
//
LOCUS       KCLA01002586             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42095upu ultra-conserved element locus uce-520,
            sequence.
ACCESSION   KCLA01002586
VERSION     KCLA01002586.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-520"
BASE COUNT          270 a          169 c          173 g          276 t
ORIGIN      
        1 cacctgcatt tggttgagaa aaatgttggg tctggtagat attgtgagga agctgaaaag
       61 gagagtcaca gcagcctcac acaccaccaa accacaaccc cttaggaata aaaactgaca
      121 taaaccctgc cgcagaaaat gagccatgag gcaaagagga agggggataa aactgagtgg
      181 ggtgtgtggg tcagcttaag aggacaagac tacaaagaag gaagaggcag cattaaaaga
      241 aatattaata aattgaagca tgttcacttt ctcctgcaca gtagattcta tcagaagaaa
      301 acactgaact ttgtagtgtt agcagcagct gaaatttaga attattgttt cctcctaaca
      361 gaagactcat tttccacggc cgcatttgca gcataataag ctttttgtta ttttttcaat
      421 tagagtcaat tgacctaaca aaatggttgg caattaagtg atttttgtaa tggtccgggg
      481 gtaatttagt cgagcttgtc agctgtgttt catgaagccg agatgtcttt ttttcccact
      541 gcctctctct ccctctctct cactctctct ctctttctct ctcaagcata atggctcata
      601 atttcaaaat cttttccttc tgtttccctc acaataattc gcaattacag gaagttgttg
      661 gaggtgattt tttttcctac cttgcttttt gagttagtaa ttttaaataa aatgtacata
      721 cttgtaaaaa gggggctatt acagaaatca ctttttgtgt aaactcaatt attttacgaa
      781 tagtgacacc agtttctgct gggttcaact cctaaaggct gatgtattat tattttcagg
      841 ggaaaaggtt ctgaacattt agaacacact ttcaaatcaa accactgt
//
LOCUS       KCLA01002587             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42111upu ultra-conserved element locus uce-7344,
            sequence.
ACCESSION   KCLA01002587
VERSION     KCLA01002587.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-7344"
BASE COUNT          211 a          128 c          161 g          258 t
ORIGIN      
        1 gtttattacc cagcaggtca tatcctgtat attttaagaa caaacacctc tgagattgtg
       61 atttggtgga aagaggtgac atgtcattgc tgttgttttc actacagcct tgtgaaaaaa
      121 ctaattacct tttcatctta gtaaattcag aggtcagttt accactacta tatcacaaca
      181 tgacagggaa catgggtaat taggtaggct gtgtaacctg gatattccat ggatctcatt
      241 acatcttgtt tagaaaggct ataatttgat tggtggaaaa ttaaggcatc tcctcatggg
      301 tcattttatc tttctgcaat aataattctt ggcttgatta aaaattgatc cagtgtctta
      361 aagtgaattt attattacta caatctatca cctgcagaca gataatctgg ttcccatctt
      421 tatctgattt gaaaaatctg tcacttatta tgtgttgttt tcttcccaat catttaaatt
      481 gatggtttac tgtggcgagg cgtgctacca taggctttct gacgaaagca tgtaagagac
      541 attaagacat gactttttgc tgcaaggaat ctgatcctac gttgaatatt gattgaaatt
      601 gtgatatggc atcactttct caaaaacaag cagaaatttt ggttggagag aagtcagaag
      661 gacaggctgg tcgtattatt ggagaaaacg gtctgtgcgt cagcagtgcc cgtgtggagt
      721 ctggctgtgt gtgttgctgt ttctgctgag tgcagctc
//
LOCUS       KCLA01002588            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42126upu ultra-conserved element locus uce-7763,
            sequence.
ACCESSION   KCLA01002588
VERSION     KCLA01002588.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42126upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-7763"
BASE COUNT          339 a          214 c          205 g          297 t
ORIGIN      
        1 gtacaccaag ggctagattc cagccataca gtcagggtaa ataatgtaaa gccatcaatc
       61 acattttata gtgagcaaaa tgaaattgca gaaataaaga caagttaata aaataattaa
      121 tattagtgga aaataactgg catacagtaa taaatgctct tctatagatg cgccacttaa
      181 ctgtaagaaa atacatacat acatatacag tggctacaaa tgaacttgca attttcttcc
      241 agaagtattt gagcaggaag taaaacattt tcccagtgga tgaaataaca ttcagttttg
      301 ccaatctaag caaggcagac ttaaatttta tgtgtgttcg actgcttgtt ccccctcagc
      361 taataacctg cctgctggaa acatttcaaa tggaaaggag ttcacagttc ctaagcccag
      421 ctctgaatct atctgccatg catgtaaaca agtaaaccat tatgtttctt gctgagataa
      481 agaataccat gataagtggg gacttttaca aaacaaaggg cttcctattg ggagtgtgga
      541 taatcttcca gaaaacccag tgttttggca aatcacacca gattaatcta ttaggcatct
      601 cctttcatca tcaaatttcc gctgcctatc acagtgactg ccttataaaa caccgttttc
      661 tcaatagcct gcccattcct aggatttcag gtgctggtct gccatgctca gaaaacaggt
      721 gtccccactg ttttcaggca ggaaaggtcc ctgcacagaa gcctgggaaa gggcagggat
      781 atcagtcact gttctacctg aaagaacagg taacaggaaa cttgattcaa tggtctgaac
      841 ttaattggca tgcattagtc tgcaccgact gctttttgtg aattaaaaat cctcataaga
      901 attcttcctg acaaaagttt cagaagtggg aaagatatgt gtgcagagat tccctcccag
      961 gagcagccag tcactgtatc tctgttttaa gtgtcacatt ctcttggtgt attccagaaa
     1021 atataatcta ggagttgagg gcagagtgtc actct
//
LOCUS       KCLA01002589             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42140upu ultra-conserved element locus uce-6648,
            sequence.
ACCESSION   KCLA01002589
VERSION     KCLA01002589.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-6648"
BASE COUNT          300 a          148 c          148 g          267 t
ORIGIN      
        1 ctcgcctttt aggaacattg gaaaccatta acaccacttt gtaaacagat tttgaggtga
       61 cagtgcaatc tttgcaaagc agggctccaa agagacacat gccacacaaa cgcatgcatg
      121 catgcattcc acttttatga ctttggaata aaaatgcaaa tgaatttatt agcttaagca
      181 tggcaccaaa tagaaattta tgcacataca tttaaaaaac atactctttg aaaataaagc
      241 agttgcagcc tattaatttt cttctttgac aggttttaaa attcccctaa aaaaatgaaa
      301 cagcatgaat actgtcaata tatcacaaca ggcacattag gttttgtgat atacatcata
      361 atataaagag cactattaga gcacaacctg ggaaccatta aatcattcta aatcactgtt
      421 acattccatt agtgtcaatg gtgaaaccac ataataggct ttattacaaa cttcaccttg
      481 gtaggccatt gtctctaata accacttctc tgtgatgtgg tatcatactc agaaatccag
      541 ggagataata aaggctccct tatttctttt ttattggatg ggtaaagtta aatttagctg
      601 taagtaaaaa aaaaatcttg aagctttgtt cactaactgt gagttgctgc tatttggaca
      661 aaaaaaaaat taggcagact tgggagaaca gtttgaaata aatttgaatc ctggtaaatg
      721 cttgaggcca aggtaagata ggcagtcctg gcaattacag tgtcattttt gaaatgtagc
      781 ttagtgcatt tgtgcccttc tttacacttt tgttcaggta caaagcattg attatagaaa
      841 cattatagga atgaaattat gtt
//
LOCUS       KCLA01002590             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42155upu ultra-conserved element locus uce-897,
            sequence.
ACCESSION   KCLA01002590
VERSION     KCLA01002590.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42155upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-897"
BASE COUNT          196 a          103 c          140 g          300 t
ORIGIN      
        1 tttttctgat ggaatgtaag ttaaagttta gcaaggtcag actaaacaag gttttaattt
       61 actgttgctc attccgttat atctctttaa tttggataaa gggagccctg ttatttattg
      121 gggtttttta aaagtgctgt atgcagatgt ataatcgatt cattgacgag tgtttttggg
      181 ggtttttaag cattcagtct aagtgggctg ctcagtgaaa tttgtacatt cataaaatag
      241 ctgattgaaa agcaatattt cagataaata caagccagcg atctatcagc agttgtaata
      301 aaagctgggc ttcaggctgt gattttattt tgaaataata agaattgctt tattcttttt
      361 acttgagtta ccatggtaat tctgtcgtgt agcagtgtta tattgattta gaaagtggac
      421 agtaatattt cttttgtgtt attctgtttc taggggttga tttctaattt ccacttggag
      481 attactttta taaatttctt aagtccttcc acttttttct ctagcagtgt aattttcctc
      541 tcacacattg ctattttctg agcttattgg tttgctctta ttttaaatta aacttgctgg
      601 tttcaaatat tgaaatgaca tctttgtctg tgtctctact ttggtttagc aaaatattac
      661 agtctgctgt tttatgctta ataatttaag ggaagcttta tggctgccat cagtggtcac
      721 tggtaactta ggactaaac
//
LOCUS       KCLA01002591             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42171upu ultra-conserved element locus uce-5500,
            sequence.
ACCESSION   KCLA01002591
VERSION     KCLA01002591.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42171upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-5500"
BASE COUNT          183 a          222 c          191 g          150 t
ORIGIN      
        1 cctaaacccc ccatttcact gccagtgaca gcgattccca gctacagagc cctgcgaagg
       61 gtccagcaca ccccaccact ctgctgggct gctgccattc gtcaccgggt cactgcctcc
      121 ccgtgaggag gaagaaaggg tttccttaag gaaggacact catcaagatg cccaaccccc
      181 ccaccccgtg atcaaccgcc tgtccccaga gccaaggtcc gaggacagga ggggctggag
      241 aggcagggca gccccagcgc cgggccgggg cggtcggtac tcacctctag tgtagtcaat
      301 acaatcttct caactgaaga aaaataagcc tcccacaaga actgtgtctg ctgtctaagt
      361 gctaggattt tatcctgatg gatagacctg attgtagaag gaatctgtaa tacaagatgt
      421 aatacagtca gcaaacaacc cgatgccatc gcattaagat gctgctgaca ggtcctctcc
      481 tctattagca ggctgcaccg cggcggcgct cctgtccgac acagatgcat gtgtcaacag
      541 ctaaagtctt gatggaaaac gaacgagaca caaccctccg ggacctctgc gactgagtct
      601 atgaatattt gctttgtctg ccttcttcaa agttgggggt ggctgataga agctccctct
      661 gcacagggct gtgggcagga caggtaggga gctcctccac atccccccta ctctccagga
      721 ctctgaacag gacaggtagg gagctc
//
LOCUS       KCLA01002592             661 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42187upu ultra-conserved element locus uce-1692,
            sequence.
ACCESSION   KCLA01002592
VERSION     KCLA01002592.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 661)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..661
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42187upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>661
                     /note="ultra-conserved element locus uce-1692"
BASE COUNT          206 a           98 c          113 g          244 t
ORIGIN      
        1 agagtctgca tgcaatcctg ctcgtgagct ctcgtgtcat aaatagactc ggttcaggaa
       61 ataaaaatgt attgttttca ttgttagggg atgctgctaa attggctgta tgtttgtcta
      121 ataatcacat ccaaagctga ttattgtggt aatagcctta agatattatt tgaaaataaa
      181 tatataaatg cactactttt gtactaatac gagtttttaa tctcttgttt ctatgaagtc
      241 tgaatgagat tttcaaaatt gaataataat ttgatccgtt aatcttttga agctagtaat
      301 tttattttcc cctctttgca gtctctgagg ctcgcaaatg aatagagctt cattactgga
      361 gtctgcattt aataaccatt atccattatc ttgtaattaa gactccctgt aacgaatcat
      421 gaggacaatg caaaaatacg tagtacattt ctttaatgaa ctggaaaatg ttcatcttgt
      481 tctatttagt aatgagttgc tgaatagtcg ttaaatccgc tagagaatag agctagatgg
      541 attttgaaga ctatcttgag tttgtggtta atctattaga attaaaattt catcttctat
      601 ttttatcaac agctgattag aagtcattct gtttgaccaa attgattaga agaccatata
      661 c
//
LOCUS       KCLA01002593             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42203upu ultra-conserved element locus uce-5584,
            sequence.
ACCESSION   KCLA01002593
VERSION     KCLA01002593.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42203upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-5584"
BASE COUNT          247 a          219 c          168 g          212 t
ORIGIN      
        1 tatgacaaac tgctcagaga agcgccttca gaatgtagca cgaaagtcga ctccattgcc
       61 agtatttgcc agcgaggggg atttgcacag attccctatt ttacacacac acacatacag
      121 cccctagatt ttctaagagg atggcacttg aaaaggattc ctggagccct gtgcgcacaa
      181 ctctgcttgt gccagccaac aatgcaggaa tcccccgctc caagcacctg taaactgaca
      241 ctgcaaagca gccattggaa atgctcacca tggccatata tttaagcaca gagcattgcc
      301 taagctactt tttttcctcc ccttcttctt ttaatagatc tcagcacaaa agccggagag
      361 agggtgaccc accaaacaaa agagcctttt agttcctagg aaaagtagac ttgaaggagg
      421 atggaaggaa tccaagtggc cctattattt ccacttgcac taattagaca tttttctgtc
      481 agccattgag cacccctgag aggccaaact cactgaattc atttctaaag tgtttacaga
      541 agtttgcatc tgtttgtgtc tcttcaggag gaaaataagc acttcaatag cattgtggaa
      601 aatctaaacg aagcatccta ttctgaaggg cttggcagtc ttgcagctgc ataatttaac
      661 tctctgctca atgctcaaac ctcttgtgtc cctctccaaa cccaaatgga cataaaacgt
      721 agaaaagtca agccaaggag agaaacccag ctcttttttt caaaggcagg gctgcacgct
      781 gtgtggcaca cggtaacacg gttccatgtc aaccttggca attacgtcct cccaccccat
      841 acactc
//
LOCUS       KCLA01002594             627 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42218upu ultra-conserved element locus uce-7281,
            sequence.
ACCESSION   KCLA01002594
VERSION     KCLA01002594.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 627)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..627
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42218upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>627
                     /note="ultra-conserved element locus uce-7281"
BASE COUNT          217 a          109 c           91 g          210 t
ORIGIN      
        1 actaaggact aacatatgta gtttatacag aataaatttt ctggaaattg atcttttcag
       61 tagttcaggt tatgtcttaa tggacatgac taactcagct tagtgttaac taaagctatg
      121 tttgattttt aaatactgta cagtttaata aataaaccaa acaaagcctc aatgtagaac
      181 agtcactgcc aatgtcaccc agtatccctg cagatatgag aatttaacaa atgtattcca
      241 gtggtctgca gatttttcct ctacatacag catttaaaaa acatgtatta aaacagacca
      301 gtttccagac taaactaatg gagaaattac atttcagtgc aaaatatttt agactgcatt
      361 tctttctagt attcctcagg tgaagaagtg gttgcatatt attaaaaatg taacaaaagc
      421 agctaatgct ttcataaaga gtattatgtt agggatcccc ctcacatctt tgccatattt
      481 tgaaaacaaa ataacatttc ctatagccag caattttgtt tatttaaatg ttacatatac
      541 tatctcaagg cacatctgat gatatattta taacacagta ggtgtcaaag tatgtttaac
      601 atatgatttc ttcaggatcc ctcccct
//
LOCUS       KCLA01002595             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42234upu ultra-conserved element locus uce-2814,
            sequence.
ACCESSION   KCLA01002595
VERSION     KCLA01002595.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-2814"
BASE COUNT          205 a          272 c          243 g          157 t
ORIGIN      
        1 gggtctgagc ccaaagtcag catcagaccc caaaacagga aaaaggctga gcccaagctc
       61 tgtcacatcc tccaccttca gcctcccagc cctgcccccc tgccccagcg atgaccagga
      121 gctgggaacg ggccatcccg gagcagcaca gcagcgagaa gcaggggacc gaactggttg
      181 gcggcctcac agcatcgctg ccagtgcctg gggagacggg ggtcagggta cctgactttg
      241 ctaattaacc cccgaagaaa ccacctacgg acgcagcggc agctgctttc agggagctgc
      301 tccgccgctg cccgcaagag gctgagccat gcctcgcctt agtgtcttcg aaggagaagg
      361 ctatcagctc caaacagccg agacctttag ctcaaatcca ttaatcctct ttattaaacc
      421 caggtcacct ctgagtcctg gcaaattaac cagcatctcc ccactgcaag tacatcaaga
      481 ggaaacgcgc tgtacagcgc ctgtaatttt catggaccag ggcttcgggg tcagagggct
      541 tcctgggctc cattctctgc ctttgtcaat ttaaaaggga acatcagctc gctcttgtat
      601 aaattacgag agcggcagag cggagccctg gggcgcttgc ggggcgatct gccatttgca
      661 gcccggccag tgggatgacg atgagaccac gagcacccag tcaccaggaa aaaatggggt
      721 tggggccatc ctgctagcac aacctcccaa cagctgggcg gccggggtac tgggcttggc
      781 atcttccagg caaccctggc catttgcctt ctggctgctc ccaataaacg actcggaccc
      841 cgtgccagcc cagctgggga gcaagagaaa gggagac
//
LOCUS       KCLA01002596             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42250upu ultra-conserved element locus uce-6902,
            sequence.
ACCESSION   KCLA01002596
VERSION     KCLA01002596.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42250upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-6902"
BASE COUNT          136 a           88 c          104 g          155 t
ORIGIN      
        1 aggtgctgct ctgcagagac tccacatagt gagtagttca ggctgctaaa ggatttgaca
       61 gaatttggta gtaggaatag tagcagtaat agcaccaggt ttctgctgct cacgttgtat
      121 aagaaaagga cagttattta aaatccagca ccagagtggt gagaagtttt aataggaatg
      181 tgcttgagct gctgttcctt accccaagtg aatttcctcc acagctccat attttgttct
      241 ccatgtgtat tgctgctctg agagcctgtc atttcttatc agaatgagaa aggctaaaga
      301 gataatattt caataacata ctggcctgat cataaaataa ctcaatggaa atgtgtaagt
      361 gcctggggca gcacagcagg atagtcagca gtcagatgat ttctattccg ggtttctttt
      421 ttttatggtt acattttctg ttatatcaga cataccctca agtcttagtt atgcttttat
      481 tca
//
LOCUS       KCLA01002597             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42264upu ultra-conserved element locus uce-3644,
            sequence.
ACCESSION   KCLA01002597
VERSION     KCLA01002597.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42264upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-3644"
BASE COUNT          315 a          161 c          150 g          250 t
ORIGIN      
        1 attaccttcc ttccaaattt agtattacac gtccttatac taaaatccag ttcagaacaa
       61 gattaagtag aataaatata gctttcccca gcttttctaa ttttgcctac tgctattcta
      121 ctgatttcaa ctgacaggag cagaagcaag gtaagtgcag aaggaactgt gaatatattg
      181 tcattgtctt tatttagctg caccatcaaa acaaaaaaaa gacagtattt tcttcatttt
      241 gatagactgg gagttcactt gtagtacaat atccattgat gctgaaataa aaaatgtgaa
      301 gtaacctcaa gatacacaag cttctgtggg caacagaata tcaaatcaca taaagaggct
      361 tcacatttaa attacacaaa aattaaaggt attttgaaca tacattaggg caggatatgg
      421 tcctttgaat gttattctca atgctcgtac cagcagcaac cgtcatctga aaaagggggc
      481 aacagagatt ctgctgaatg gacagaattt tgtacagtgc tacagtatat tcaaattaca
      541 ccgagctaaa aaggtgaatg ttattatcag tcaggctcaa ctgacattca cacaaaaatc
      601 ctgaacgtac tgttacatct cctggttcac gaggtgctaa gaacaagcaa ataatacatc
      661 actttggtgt tctgcacagt gttcactgaa gtgaacccta aagcattgtc aaatagtcag
      721 atagcaatgg agaaataacc atccatggct aacattaatc tctacataaa gcaaactgtt
      781 cacctgttag tgaggttaaa aacataggac ttttctcaaa tgaaagcatc ttatggaaaa
      841 acatcagaag taaaactatg aacttattgg tagaat
//
LOCUS       KCLA01002598             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42279upu ultra-conserved element locus uce-6715,
            sequence.
ACCESSION   KCLA01002598
VERSION     KCLA01002598.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42279upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-6715"
BASE COUNT          279 a          153 c          136 g          263 t
ORIGIN      
        1 tgtgctttga aaaatgtctt gttccttcat atcatcacaa atacttcatg gcatcccatc
       61 aaggtgttga tgtaaagcct aatgtatgac ttcttatatt tctcttaatg agccatatcc
      121 actttgaaga ctaaattaga ttatcatcag cctaacacca tctacaaaac actgtaaaga
      181 ggttaaactc ttttagatgg ggtttctgga tatttatatg aaattacaaa tgttcctgtt
      241 agaaggttat tcatgtaccc atacattata gccactgcat gaacactctt ttgcaaatca
      301 atattaatta aaaattatga tcagagaact aaacaaaggg cctgtgctac tatagaaagg
      361 gtatgcccca gtgacagatc actgttaaaa cctctcatgc cattgggtga tatttgccat
      421 atgtccaatg attgatagta agatttaatg agttcttaca agcaattaaa taatcaaggg
      481 ttcctgctgt tacatggcat agcttgatag aacagtgaca aatgaaagaa tatctgcaac
      541 ctaatcaaag ggacatattt ccttgggaac aaaataatat tatccaccag tgcaatcaaa
      601 ggacaaaaga acacagagag gacgcaacag aatgagataa attttgtgct cttttcatta
      661 ttctggccat acagtttcca tttattggat cctattaaat cagaaagaaa attagactac
      721 ttaaatatgt ttcatttgtc atacactgtt agtcagtggg tgcagatcca tatccagtca
      781 ccttaagtct cctttcccca tgaaacgtga tcttagatta tagttttcgt c
//
LOCUS       KCLA01002599             375 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42294upu ultra-conserved element locus uce-8010,
            sequence.
ACCESSION   KCLA01002599
VERSION     KCLA01002599.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 375)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 375)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..375
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>375
                     /note="ultra-conserved element locus uce-8010"
BASE COUNT          105 a           73 c           83 g          114 t
ORIGIN      
        1 ttttttaacc agtgaactca gaagagaaag cttcattaaa ccaagttcta aaattgttgg
       61 ggaataataa gaacaataaa aaagactaac gagtttatgt taaattgtga gaacaaaagg
      121 gaagtgaagg ggtccttatt ttaaagctgg gtttcaaaag tttgagagag cctaaagaat
      181 acattctcag agacagcgtt caacggttgc ctggtcctcg aacaggtgat tggcttggtg
      241 gatcttctgc atataacttc aacaggtgct cgccacctgt ctctctgtca cacagtctgt
      301 ctttggtctg gcatctgtct ctgatgggcc ttttcctaaa cctttatttc cgtctcggct
      361 gaggctgtcc acttt
//
LOCUS       KCLA01002600            1055 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42310upu ultra-conserved element locus uce-5921,
            sequence.
ACCESSION   KCLA01002600
VERSION     KCLA01002600.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1055)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1055
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1055
                     /note="ultra-conserved element locus uce-5921"
BASE COUNT          267 a          258 c          190 g          340 t
ORIGIN      
        1 agcagtgcat cagatcagga tctcccactt tctaattgct gggtactggt gtgtcgtgga
       61 aaggcattca atgtcctgtc attcttttat cttgaaactg gtatcagcag gagacaaagt
      121 gcagtgaaac tggtccttct atgcagtagg caaaagccct tggttagaga gcaactgcag
      181 acgagtgtga cagtctgcta ggcaaactcc tgttggctct cctcttcaca agccatgctg
      241 tcagcccttc gttctccacc tctaccttgt cgttcattgc agttgtctgt tttttcccta
      301 cctgagtgtc ctgagtcaag catgtcagtt ccatttttca gccctttgtg ttcattgatc
      361 gaaccctatc atctccttga ctggccttat ctgcaacgga accctccaaa cctgtgcctc
      421 ttcaccctgc tgctccacaa cccccctgct acaccttacc ccagactgtt ggcataatca
      481 aggctggatt tcaatacttc ccctcatttc tctgttcact gctctgcagg ttaatgcaga
      541 ttccaaactt caacaagcag ctgttaaaca tgtcattaac actgcttcgg ctgcaaatga
      601 aactctgcta ttgggattat tctgggagct acagttttgt gatgagcttt gtcaatcacc
      661 gctgacctgc tgtgtacaga atgaaactca gattatcttc tttcttcctc agactcttgt
      721 cattttttca caaagaatta ctattctact ccctgaaaga ttgattactt gcacaaataa
      781 gagagtctga gacattaata caaaattcac aggcttttct ttatctcaaa cctgcaactc
      841 cctctacatt tcctcctggt aattatatta gaattgtgta cactaggaat tgccatctga
      901 ttattatgaa actagttttg tcatgacaaa aatgagctta agtcttgttt ttttggaaaa
      961 tgatcagtac tgtgcactgg atgagagaga aggagattaa atccaacttg ctttcatcca
     1021 tgaatgcttt catctctttt tcaaacacag gaaat
//
LOCUS       KCLA01002601             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42324upu ultra-conserved element locus uce-2094,
            sequence.
ACCESSION   KCLA01002601
VERSION     KCLA01002601.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42324upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-2094"
BASE COUNT          144 a           74 c           95 g          144 t
ORIGIN      
        1 tattgttgct ttaggtctcc tgtgtaatta cacggcagcg tgtcattcag cattaatgat
       61 ctcacggacg actgtctaaa gccatctaaa taatgatatt tctgatcact taatgggcac
      121 gtctcctatg gccggttaca agacatgaga gtgtacttgc tcgaaattta tctgaacctt
      181 gagatgggag aactgaaaac tccttcactt gatgagaact tttgattagg gcttgggtag
      241 gtggataatg aaagagtgaa acattgaaat gtgcctaaat aacatgctgt tacaagcctt
      301 atgatagatt tgtgtttgac ttaacagctt ttggaaccta ataaaaagaa cttaattgac
      361 aatttcttga aattgctaag aaaacctagt gatgttggta gggtataata aggagttttc
      421 tcatcactgt cttcaagatt gagcctatac aaaaaaa
//
LOCUS       KCLA01002602             251 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42339upu ultra-conserved element locus uce-4463,
            sequence.
ACCESSION   KCLA01002602
VERSION     KCLA01002602.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 251)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 251)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..251
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42339upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>251
                     /note="ultra-conserved element locus uce-4463"
BASE COUNT           67 a           66 c           49 g           69 t
ORIGIN      
        1 atctaggcag ctaatccgaa cgctccgaat ccagttcagc tctttcgtct ctcactggac
       61 gccccgcgct ggtagacgta cgcagctaac caggttccgt gcagtagaca aaatatcatt
      121 gtgggattac attagtccga cagctgcttt atgactgcag cttccagacc aatttattta
      181 atattgatct ttaaacaaac atcagtacaa ataaatttga gcgctcgagc cccgtgattt
      241 cgtatctgca c
//
LOCUS       KCLA01002603             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42354upu ultra-conserved element locus uce-7426,
            sequence.
ACCESSION   KCLA01002603
VERSION     KCLA01002603.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42354upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-7426"
BASE COUNT          201 a          143 c          112 g          218 t
ORIGIN      
        1 gctaagttaa aaccagtatt actgtggtta gcacttcaca tagaggatgt taatgatgat
       61 ttacctaggc aacacagaag gggaaaaatt atccttcctg ctatctcgca aaccagcagc
      121 tattcctctt ttatcaccat cttgactaaa aacatgtatg ctatacatgc aaagcagaaa
      181 cagacgcctg ccctaatcat aagaaatgat gatacaggct tgacagtagc tagaagcaaa
      241 cacctatgtg tgtttcagta atcccatgtt tatgcatgag gtaacaaatg cacttaggta
      301 acagcttttt cctcttgggc aatgtcttat agtccttctc catcagcgaa agccaagaaa
      361 ccaactctaa gctcatttaa gtggattttg ttcttggtga tccatgaaat gctctgtctt
      421 tttatctgct ctttatactt ttaatgtatt ccccatagaa cggaagtgta cttttcctgc
      481 agtttaagac taaggttata aataacatca gtatggggta gtgagcttgc agctcacatt
      541 ttgctcaatg attttccata aaacccattg attgttgtta aatacaaaaa gctccatagg
      601 atcctctcac ttctatggtc tcccctactg ttttttctta taagatacct ccctgttgaa
      661 aataaccttt attc
//
LOCUS       KCLA01002604            1001 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42369upu ultra-conserved element locus uce-3231,
            sequence.
ACCESSION   KCLA01002604
VERSION     KCLA01002604.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1001
                     /note="ultra-conserved element locus uce-3231"
BASE COUNT          246 a          278 c          227 g          250 t
ORIGIN      
        1 tctctgaata cctgtagctt cctttctgca ctaacatttt actgcgagca gtctctccta
       61 tctgccagtt aacttcccct tgaagcccag tggcctcctc tgctctggtg gtcactcatc
      121 tcgctcctct cagatctcgg aagggggtgg caaatgaaat atcaagcaca ttcacatcaa
      181 atggcagcgt gaccccccca ggtaatgaac aggcatcaga tgtgggagcg ttctgcccca
      241 caacttgtca ctctccttgg gctctgactg tgcctcctct gtccgtgagc gcaagtggag
      301 cctaattcgg agcagctcct tgcaatccct taccggatgg ctgctgctat gattcttaat
      361 tagaaatgca acgttgggga agaaaggcaa gaggaagaaa cgcacggcag agagtgactg
      421 gtttgttgat gcctgtagtc tcggctacaa tacagctcct gctgcatttc ttccagcagc
      481 acaggctgaa tcttttccct catttgatac agtgacctct caagtgcatc attgccctga
      541 gggctgaggg cagtccagca actgttaaac cccttgggtt gataatcttc tcccacattt
      601 gcccttaaca ccagacatag caccattagc tacagctcca ctggtgctca ttagagccga
      661 tcaatataga ctaacataaa gaatgctgct gcaccttctg ttatttttca cttactgcaa
      721 acacacagcc tctcacctac accaccaggc aacgccgctc tgctctgtaa aaaagaggct
      781 ttaagacagc aaaaaccaag gccaggtggt ttctattaga cgccctgatg tcgtttatcc
      841 ccggcactag cgggcgagcg gaaggtgttc cgtacagaat cctccttggg ttaagtcgcc
      901 gtaaaattgg agtctgaagg aatcggggcg gatgcttcca caaacccagg ctctttctca
      961 tacaaaagag agctggagcc tcgaaggccg atgcaaacgc t
//
LOCUS       KCLA01002605             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42384upu ultra-conserved element locus uce-4650,
            sequence.
ACCESSION   KCLA01002605
VERSION     KCLA01002605.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42384upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-4650"
BASE COUNT          262 a          153 c          135 g          291 t
ORIGIN      
        1 tctttcctct taaataatta aacaaagaaa atgtgagttg gactcattct aaatgcaggg
       61 taactatcaa gaacatgaac aattactgag tgcatgatat tacacaaata aataacactt
      121 agcattatct tcagcactct catatttatt aaacagtgac tgagggaggc agtaaccatt
      181 tttattgtcc catacagctc ttattttcta attaaacaga aggttatttc cactgccaat
      241 gcagccattt atcttgtttg agtgttacat aatatttttt gccagccaag cctgactata
      301 aagtggtgtg tgtggtgaac tgtggcccaa ctttctttcc tgtttgataa tcacagaaat
      361 gggccatttt gtgctgtgtt aataaataaa ctttttgcag tttctcctaa aacatgatga
      421 agcttatact ttgtcctacc ctctagcttc aatacaaggg caatgagctg tattattaaa
      481 gatataggtc aagcaaacct gatgatttca atcctgtggg gtgctttaga aactgttgtc
      541 atattactga gatcattctg ctgttcctaa ttattcctct tggttgcttc acatttcaag
      601 tgatttctct cacacttatg tcaaaattta taagctgctc tgtgtaacaa cactacatta
      661 tttcctcact tgttatggta atataggaca gaaactagga gaatgcttta atctatctga
      721 caaggataat gtagtctaga aatgtaataa actttgtgtt ctaccacaga gttgtctttt
      781 ttccctacca tgaaacattt catatagata gacatcttag aaaaactaat tgctacaaga
      841 a
//
LOCUS       KCLA01002606             695 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42400upu ultra-conserved element locus uce-5261,
            sequence.
ACCESSION   KCLA01002606
VERSION     KCLA01002606.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 695)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..695
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42400upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>695
                     /note="ultra-conserved element locus uce-5261"
BASE COUNT          220 a          136 c          133 g          206 t
ORIGIN      
        1 gacctgcaag gcacaacata cagaaataaa aaatcctctg caaactgtac tgcctttgca
       61 ggagggtgag ggggctgata agtttattta cacttctaaa aagcactgcc aatcccaatt
      121 tatcagttac tgtcttgtga caatttattc actgttcacc gttagaagct agaagttaca
      181 taggaagcat gattggtgat agcttctcta tttcaatatg gtataataga gataacacag
      241 tgcccaaaag ctttacagcc gcctttttgt ctgctttgtc tcttttcatt actctatcag
      301 aatcttcatt taatataatc caaaaaagca aggtaattgc ttcacttatc agttatcatc
      361 gcactcgcat acttatcatg tcaaaattat ttatgtggat ggccaagttg atcttgctgc
      421 atttagaagc ttaaaatttg aataactgtt ctgctggtta ggttatcaaa attgcagcat
      481 aagcaatgag ttgcttcttt ctgcatcttc aagggagaat agagacaatc tcactgcaag
      541 acaactgtac ccatggctga acaccacccc aaggagtctt acaccaattc tgtagcctgg
      601 cactccgagt actggggaca gactttattt gctcgatgaa aagtaaataa aagtggcatg
      661 atataaatag agacaatgga gagaggcata aaggg
//
LOCUS       KCLA01002607             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42416upu ultra-conserved element locus uce-3257,
            sequence.
ACCESSION   KCLA01002607
VERSION     KCLA01002607.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-3257"
BASE COUNT          261 a          151 c          144 g          244 t
ORIGIN      
        1 aaagatgtga gcagagtgct agccctcgtc acagggcaag atttcacgca gcagcccaag
       61 gtcaattaag tgttaaacag tgcagggtga gatgactatg tgccatgtaa cccttttcca
      121 tatcatgagc tgtgcacaag agcctgtcta aataaaataa atgggaaata acatcacgca
      181 aatatcatct acattttttc ttgatcaaag aggctgagag aaaaaataat taaaaagtaa
      241 aagccttatg caatgagatt taaaagaaaa ctttggaggc tgacaagacg catctggcac
      301 aacttcaaag tccatcaaag tacatataat caatgtttgt caatagcagt tttgcatcct
      361 ttaatttatc tttcatggat ataaagcatg atgttattag gatccagacc ataccttaat
      421 tctgtttgag atttgatgaa tcagggctct attaaaattc agtgcaaatc agcttactca
      481 aggacacatt acataaagtc gtgtgttatc taactccttt tatcttgctg tctttttaac
      541 tagttaaaga atccggaatc tctgaaactg gtacgtgtgg ccaccaacac actaaatctc
      601 aaacacattt tgcttgtagg cacctgctta gattatgcac atgtggcata attagcatac
      661 ctaaattctt tgtgtatttt ttgatgtctg aaatctcctt taggatgttc aggctccaaa
      721 gtgaggaatc atcagaaatt tcagcacttg tcacagagtc tgtaatcaaa cgttcgtgtc
      781 ttatcttttt caccagaaaa
//
LOCUS       KCLA01002608             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42431upu ultra-conserved element locus uce-2809,
            sequence.
ACCESSION   KCLA01002608
VERSION     KCLA01002608.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42431upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-2809"
BASE COUNT          240 a          183 c          189 g          195 t
ORIGIN      
        1 ggagtggatc cttgattttg gccctcataa gtcccctgcc cacaggtgaa ctcctagagg
       61 cggtgaaggc gaagtgtgaa actcagccca tcatctcaga ggaagaaaac ccagccagca
      121 gctcagaggc agttgggtgc tttccttaat ttcaattaaa tctgaactgc accctcactc
      181 caactaatca gtgaggggct aattcagctc cctctgcaaa acaggacctg tatcaatagc
      241 cagagacaaa cactccttct tggaaatctg cagcgcacaa tagtaaatac agagaacggc
      301 gactattcat gtgttaacaa tgcagcggca gcagcccttt attgtcacac gcattgttaa
      361 acccacaaag agcaactggt aggttaaatc tattttagct gggaaaactc gacaaaaatc
      421 cttgccacca agcatttgat actgatcaca gtgtcacatc agggaagagc gagctcaaaa
      481 gaacaagtct tttttttcat ttctgaactt tagaggcaac ggcctctcct cttcgccagc
      541 tccccaggtc ttagtcctct tagtaggagg tgggcttttt attttatttt ttttttcctt
      601 cctgccactc aatgagagaa aattcaggtt ggggggaggg gaaaaaaagg aagcatacaa
      661 tgctctatgg aggcaacaca ggtggatggg gaaggggaag acaagttttc tcaagggaaa
      721 tcaaatccaa acctcaggat ggcagcaaag ggtgaggctt atgaggcagc aggatgtctt
      781 ggtggcaaac aatcacagtg taaatca
//
LOCUS       KCLA01002609             892 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42447upu ultra-conserved element locus uce-1971,
            sequence.
ACCESSION   KCLA01002609
VERSION     KCLA01002609.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 892)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..892
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42447upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>892
                     /note="ultra-conserved element locus uce-1971"
BASE COUNT          246 a          184 c          159 g          303 t
ORIGIN      
        1 aggcctgcca tccttcttga atgtatgatc tgcatctacc tcctttgtct catgggaaag
       61 tgacctgtgg caacaaggat ctctgaaatg aaggctaact tatagatctg tttgtctaac
      121 agcttataat tctaagggcc ctgattttac actttgttag tcaggtttca tgggaaatac
      181 acccgatttt gggttgactt tttctcttgg gtccccttta aatatatgct acatacaatg
      241 tttatctttg atcagactta tttagcagat agaatcagct tttgttttta aaaagtgacc
      301 agagaattgg tttgctatcg agtgcatagt taagatgcct catacagctc tgtttttctg
      361 tacttctctc attctctgcc aactggtacc tcggtcttat tggtatccaa taataagccc
      421 gattacagct agccctagga gacatgacaa aaagagagtc ctcatcttgc attaattgct
      481 cgtattgaaa ctatgccaca tctctcgaag ctagatgttg cttagtatcc ctttgatatg
      541 ataatgacat gcttcttagc agatgaatat gcaaattaaa agcagtaatt tggtggcatg
      601 cacctgctga cactgcacta ctatgcttat gtgctcctct gtaacactgc agctacacaa
      661 aagcatcaca gaggtaaaat taaattctaa tgtcgtatat attaaacaga tgcttccact
      721 tttctttgta tatctacttt ttacagaatt tgctattgga atctcagttc tcccttcatg
      781 caattagtgg acatttatgt gtcatacaca gaaatgtact tggagctatt taagggccct
      841 gtttttaaag aaatggttta catgaactgc actctcaaag agattccccc cc
//
LOCUS       KCLA01002610             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42462upu ultra-conserved element locus uce-7459,
            sequence.
ACCESSION   KCLA01002610
VERSION     KCLA01002610.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42462upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-7459"
BASE COUNT          123 a          152 c          209 g          112 t
ORIGIN      
        1 agcgcggctg gccccgctcc tctggcccag gccctctgcc aggcagctct gctcccgccc
       61 ggctgttccc ggggtgccgt tcggagtggc tgccgcgcct gtcctgtctg gtggcaatga
      121 tgaatgccaa acatgagaga aattaatgct gggggttttg gtcaatgtca gccctttctt
      181 cactgtgtca agttaaacaa acaagatcaa ggcagaggaa atggtaattg tctctctcga
      241 gatgggctgc ggataagagc agcctcgcgg aatctaaatg ccgcccgcgc tggcgggttg
      301 tggccagcat gaggaaggag gacggttctt cgcctaaaac gcagccatgt agtgagcgag
      361 cgactgcagg ggagggatga aacccctgca gggaaccggg gaacggggag gagacacagt
      421 ggcttcgggg gttccagagg tgggagaaaa tcccagctgc tggggacagg ggtctccctg
      481 tagcccatgc cagagctggt agtggtgagg tggaacccac cacctgaggg ctgcgtggac
      541 ctgtggttgg gtccctcggg aaatgcagcg ggcaagacgc tgcgataaag ctgggg
//
LOCUS       KCLA01002611             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42478upu ultra-conserved element locus uce-5063,
            sequence.
ACCESSION   KCLA01002611
VERSION     KCLA01002611.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-5063"
BASE COUNT          148 a          146 c          120 g          257 t
ORIGIN      
        1 tcattgaatt ttctgctttc tgtgcactca gcatccttct gggctatgaa tgaatatata
       61 attttggggg acaaatgaat accgtcttgt ttcatgaatg cttcttcttt cctaatttgt
      121 ataaatcttt attctgcctt actttcactt cccttttttt tggcaatact gctttctttg
      181 tcttccatct tctttatttg ttttttttgt ctttatcttt ctttttttct gctgccctcc
      241 cagcttttca ttactgtcat cttttttccc agccactgaa cccttgatgt tgttctaatt
      301 gacagacggg gtttaaaagc acattcgaaa gcgcctgtct ttttaaatag actcctgtct
      361 catcaaaaga tgtacagcaa cattccatta gagcacatca tttgaaaata gatggagctt
      421 ttagcaactg cacttgtatt tttacagtta ggctgttctg tgggatcatc cctccccctt
      481 gccagcccca ttgtctccca ctctgtggag aaagagagat gaatgtaggt tgtttttggg
      541 tttctcctct ctgcagctct ctggtgctta ttcagcctgt ttgtgtctta cagccatggc
      601 acagaaagtt ttggaattag tgatgcaaaa tacatctgtg ctgacgtaaa ggaagacatg
      661 gctgaagagc a
//
LOCUS       KCLA01002612             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42492upu ultra-conserved element locus uce-5231,
            sequence.
ACCESSION   KCLA01002612
VERSION     KCLA01002612.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-5231"
BASE COUNT          190 a          189 c          210 g          202 t
ORIGIN      
        1 acacagaacc agagagcagg cagggggaac cgcgtgctgc ttctcccaca tcaccaagca
       61 aaaaaaaaaa cccaagggaa gaaagcagag cctttgcatt attatgtgtt ccgaccagac
      121 ggcaaatgct ctatttttat agaccttccc atcttccccc agctctgtcc cctcctcctt
      181 cgcctgcgca ggcaaagttc ttgaatcagc agattctgag ctcgggagcg gtaaagagct
      241 attgagggac ggactctgat agcattacaa ccatccatgg agccattttc tgtggcgaat
      301 cgctgagttc tacctggtta tctcctgcct tgcacatcac ttccgaatga catgctctca
      361 gtctgggcaa aaaatgagag gggttttttt aagagctggg atttcaataa tatgtgacga
      421 aaggatgaga ttactttctg aggtgggaaa aggcgagaga gggggagaga ggatgaagag
      481 caacttcttg gtcctttctt agcaaggttt ccttcgtggt ggtaaaggca gcccgttcag
      541 ctgacttggg atgtctgctt acccgttccc caggtgaagg gcgttgggag gagtcctata
      601 ttgctctgca aatgagtcct tctggcagcc acgctggcta cctcagctgc tgggagctac
      661 ttgcttgtcc agtatcacca gccttggcct cttgtgcacc actgagaaga aatgggtcat
      721 tctctggagg aatctatgca cttgctggtc tgctgtggca gggggattgc actagatgat
      781 ctttcaaggt c
//
LOCUS       KCLA01002613             542 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42508upu ultra-conserved element locus uce-6339,
            sequence.
ACCESSION   KCLA01002613
VERSION     KCLA01002613.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 542)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..542
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>542
                     /note="ultra-conserved element locus uce-6339"
BASE COUNT          155 a          105 c          105 g          177 t
ORIGIN      
        1 cccccccagt aatctgacat tcgtgatcct tgttcctaaa gatcagttgt gcaggacata
       61 caggtgttag cacagctggt ttgctgatga caactctgtc catatagctg tctagtgtgt
      121 catcactcat attgttcagt gtcattctga cctagccaag ctaaaaatgg tactcctgct
      181 caagtgggat ttaaaaacct tgacaaacta aagataagac attgccgaat gtcatatcca
      241 tgtgcttaac tgttttcagt ttagacatat ctaaataact gttttaaggg tgcatttgtc
      301 ttttttaaaa ggctgaatac tccatgtagt ttgccttcag aaagaaatat ccttgtttgg
      361 agaagtgagg aattactgat tatataaact gttattttct ccagatatgg gttcattttc
      421 agcccaaggt cactgaaatc cattcataag ggatatatta tacttcacat cttgcatgta
      481 cagtgaagct taggtgcagt ggtcagtgtt tgcaaaagcc agcgctggac caaattaatt
      541 tc
//
LOCUS       KCLA01002614             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42524upu ultra-conserved element locus uce-2800,
            sequence.
ACCESSION   KCLA01002614
VERSION     KCLA01002614.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-2800"
BASE COUNT          217 a          187 c          164 g          237 t
ORIGIN      
        1 actcacagaa gaattggcag agcaccctat ttaattacag atttcatcca gcagcttaga
       61 actttcatac tgagcaaagg cccccacagc accttcttcc cccagcgcct acatcctctc
      121 atttccagct ctaatgacca ttagtacccg gaaagcatgt tgtacccaaa gttccaggct
      181 attagaggag taaagaacat acaggactgc aggggaaagg tgctttgcct gccgcagcct
      241 ggcgccgctt gctctgagct cagctctgtt tgaattagcg ctgccggctc atgtgcagct
      301 cacacattgg cccagaagac cgtgaagcgt agctgatttt tggagaaact actaagtagt
      361 ttctatagtg ataatgatgt cccctgtgct cctattggga atatataaaa ttagagagaa
      421 tttctgtttg ctttggtcct ctttctagaa taattacagc aactgccatt cattcccgtt
      481 ccgttaccct gattattcta gaataacctg gttattaagg tttagtggtg tttaagaaca
      541 tgctgccaag tgacaacttg tcatgttggt attatcaata ctttaaaatt tccatattag
      601 tgacccaatt ttctcgagat tccggagtgt ttcattcggt gggaagcagg agggagggaa
      661 gcaaacgatg cctattgctt tcctctgatc atcataaccg taatttttcc tttataaaca
      721 caaatctctc ccttactgac ccaaaaagga gccgaaacaa ttagtcttgt gaccccaaac
      781 atgttctgag gttgggaatg tttct
//
LOCUS       KCLA01002615             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42538upu ultra-conserved element locus uce-5846,
            sequence.
ACCESSION   KCLA01002615
VERSION     KCLA01002615.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42538upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-5846"
BASE COUNT          303 a          196 c          200 g          294 t
ORIGIN      
        1 ttttttcatt gacattcata atttcacatc ttagaactcc acagcgcctt gctggtgcaa
       61 aacaaccttg tattatgcta tttctctaaa gaaatgaaaa ggtaagttat aataaatcgc
      121 agaggtgaag gaacactgtt actgtttcca ctgcaatatc atagttctgc taatggcagc
      181 ctgctgcgca gaaaaaaaag ggaaagaaaa gaaacctggt taattagttg ctgctttatt
      241 gcagcattac tgctaagtgc actgagctgc cttcccatag gcaggtgctg gtggttgtac
      301 agctcattta gcctgggtga gtaatgtcag ttcaggagga gagaaaggct tgtgtcttca
      361 aactttcaat ctgcctccat tatctgtgat caaggtggaa ccacagggga gtggaattac
      421 tggcaggtct aggacaagtg aagagacagt gaatctataa gacatattaa tcatctttcc
      481 cttctcttca ctggcgccag cctgtgcctc cgactccccg gcgccaggca aatggattct
      541 ctgtccccac aggtacaagt gaatgccttt caggggcaag tcatcagaat aataattact
      601 gacactgctg agatcagccc taaccagtcc aaaagggaag agaacgtatt atgggagaaa
      661 catatttcct gaactttcat atcgctactt atggcactga gatatttttc aattacatta
      721 aggattttca aattatataa ttctatgtct atgcttcttg gtattgtagt agaatcacca
      781 atattgtatg gtcatttaaa atctttacag attctcttta aaacatcagt ggggtctgct
      841 gctgaagtgt gactacataa agatacaata tgcactataa ccattaaaat tcagctgata
      901 ttaaaaagaa cacgatcctg acatgtgtag ctttgcttag ctctgaaaca gagcaactca
      961 cagttttggt atagctattc ctaatgataa ata
//
LOCUS       KCLA01002616             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42554upu ultra-conserved element locus uce-7428,
            sequence.
ACCESSION   KCLA01002616
VERSION     KCLA01002616.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42554upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-7428"
BASE COUNT          276 a          176 c          137 g          289 t
ORIGIN      
        1 atttcctcat tggtatcaag gaaaaacaac agtattttca tgtgccacag ttaaaattca
       61 cagcgcatcc tcagaaagtg tactaggcaa acattttagg gtctggtggt gtcctatgga
      121 gaaagacctg cagaaatcac caagatagaa tgatgaatgg aaacaggatt atattgcagt
      181 tgaaaagtag cagaaagcta tctaatagat cttatactgg ttagtgaaca ggactcacat
      241 taggtaatgg cagcagaaaa cattaaagac aattgtatat gatgtagtat tcggtcagat
      301 tcgttcacag tgtatagtca tttccaaatg gcattttgct gttctttgtt ctgtagcagt
      361 gtctaatatt tctaaacatt tttaggctct gtgacacctt aatggtatac aataacagta
      421 tgcctccctc ctagaaaaat ggatactctc atttttctaa acattgcacc tttaccttta
      481 accatttcca tttaaatgca aatttcaatc atgtccacct ctctgtattc caacagaaac
      541 cgagggaaaa gactatacct taaatcctca tttctctata aagggagctg tttccttcag
      601 gtgtgtcact ccatgttatc tatcttcctt ctcattttac acatcatcat tgttgcaagt
      661 ttgccttgca gaattcacag ataaaaacca gtcttctctc tgcttgaaaa ctctgctgtc
      721 tttgaggact aaaagaaaat acgcatttct ggttatcttt actccctgtt aaatttgtct
      781 gacataacct actgacatac aaattttcca ttcacaagtc tttgatttat taccagcatt
      841 tacaactatt tatattcaca aaagcataga aattccta
//
LOCUS       KCLA01002617             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42570upu ultra-conserved element locus uce-1907,
            sequence.
ACCESSION   KCLA01002617
VERSION     KCLA01002617.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42570upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-1907"
BASE COUNT           68 a           55 c          100 g           70 t
ORIGIN      
        1 tgtaaagctg tctcgatgtt ctgaagcagg aaatattgcg gggatattta tagccgcggc
       61 accggagccg ggttgaatag aaacgtcagc gcggtcggcg gagctgtcag agcgctcggc
      121 ggagcaggga attttagtga attgctgaat taccgttgtg gtcttgacaa gtctttcaag
      181 gaggctgctg cgagcctgga gctgctctgt gggtttggga gaatgattaa ggaaatgcga
      241 tgctcgagga ggagattcca atggtatcgt ggttggaatc aaggagaccc ccc
//
LOCUS       KCLA01002618             525 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42601upu ultra-conserved element locus uce-381,
            sequence.
ACCESSION   KCLA01002618
VERSION     KCLA01002618.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 525)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..525
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42601upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>525
                     /note="ultra-conserved element locus uce-381"
BASE COUNT          113 a          153 c          127 g          132 t
ORIGIN      
        1 ctgcccccag ctcagcccct aacccgctcg cagccagccg gggcagcgtg ttaccggggc
       61 taaggctggg ctgttagcta aattaagcca ttgtgactca aaatcctcct ttaataaggt
      121 tcatgctgtc tacaacttca tcattttctg ctgaatgata attactttat tcaatcatgt
      181 tcaaggtttt ggtgaaagct agcattgatt gattaacttc aattaccatg cttacatttg
      241 catagataaa aactgctttt caatttgtga gtggcacccg gtggaaaccc cgcgccggta
      301 tttgcatttc aatgtgcacg gcgaagaata aaggtgggag cgaggtctga tcagtgctga
      361 gccctttctg ctccagtgct ccagcagttt tccataaacg ctcctgcgct ccgtccgctc
      421 cggaggaagc gccgcagcct cctggttacc agcgcctgcg acagcctgcc cgagcgggct
      481 ggctgccgca gctcccgcag cgctccccgc acgcaccagc tcgga
//
LOCUS       KCLA01002619            1030 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42617upu ultra-conserved element locus uce-5167,
            sequence.
ACCESSION   KCLA01002619
VERSION     KCLA01002619.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1030)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1030
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42617upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1030
                     /note="ultra-conserved element locus uce-5167"
BASE COUNT          301 a          269 c          198 g          262 t
ORIGIN      
        1 aggaattaaa aggggatttt gaatggcaga ctgtgattgt tgtgctgctt tgacaggata
       61 accttgatga attgcagagc aatactgcag tagaaacaaa accctaccat ggtaacccaa
      121 attaactact gcaccaggca gaaacctgcc ctttcaagct attctactcg atctcaagaa
      181 acactggtac tttctagagg gcagaaaaca aagctgagct ttcctggatg cacagagacc
      241 actgttctgt tctctacatt ctcctcagct ctttgcctca caagccagga acatgaatgt
      301 caagattctc gccctgcgtc cacatcaagt tcaagtacag aagtttagct ctttgactcc
      361 cacccccacc cccaagtcac ttatcagtaa aaggttgggc gatttattga ccactgctgc
      421 acgcacactg tcagtgctga agaaaatatg agcgggggct gtcgctcctc ttctggagct
      481 cattgataat gacatacctg cctctgtcac ccattaccca tactacaaac tacttagacc
      541 taactgaaaa atcaatagcc tccttgcact ggttcctatg gctgcctcct ttgattgtca
      601 gctcctgtct agggtcagca cttacatgaa aggggctgtg actgcctgat gctttcagga
      661 caacctaacg atatgaaact agccaacaga acagtaaatt ctgtccccct gccctcctca
      721 tcaattaggc tttgactagg cttgcctgta gaaacctgac cttttaagtt taggtgaata
      781 tggaaccagc tgaacatgcc attgccctca gcactgagcc aggaaatcca ctgacaggtt
      841 aaactaaaca gaaggttgta actgtcataa tttgcattgc actttcacgc caacaagggt
      901 gttatcagtg ggggcaagcc ctggaacaca caacacaagc accctaagtc actctcctca
      961 taaattttca agtgaaagga gataaaacat aaattcacaa acgaccgcac atttcaagct
     1021 acactttcct
//
LOCUS       KCLA01002620             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42633upu ultra-conserved element locus uce-5701,
            sequence.
ACCESSION   KCLA01002620
VERSION     KCLA01002620.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42633upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-5701"
BASE COUNT          263 a          297 c          246 g          173 t
ORIGIN      
        1 cttggattac aaccaaagac tgattccaag agcgctgtct gcagtttgtt gctccagatg
       61 cggctgcttt acctggctcc aggaggaggc caggagctcc tcctggttca gaccatcctg
      121 gataacccca tctcaacaac acaacccttg caccacacaa gtcctgccag cgcctcacca
      181 tcctctgaga caggaagggt ggccacgggg agatagtagc ccggctcatc ccataaagac
      241 agctctccag tcccactgcc tctccggagg ctggggagca gtggcaagct gctgggaggg
      301 gaaacccaaa agccacagag actgagtgtc cagaggtgtt tcctaagtgt ttcggattcc
      361 ttattcccct ttaaaggaag agatggtatt ggaaaagccc ctttcgtgtc ccctctcatg
      421 ccccactccc ggccaccctc cacagcgccc acaccatcct ttcggacatg gatcaccctt
      481 acctattgag ctgaggagaa gcttgtctcg acaacactgc ccagatagct gagattaatc
      541 aaaaacaaag cagttatcaa cacccgcaag gagccgagct ccgcaacaca tcagcacgtc
      601 aacaactcca aggcagggaa agaaaccaaa cggcaacaca aaacaaacga ggctggagaa
      661 gaaaggggga aagaaacaga agagaaaaga aaagaagaaa ccaaaaatat aaccaacgaa
      721 gcggatgggt ggagaagcgc ggacaacagt gctgctctaa caccgagctg tcccggagct
      781 gggtctccat ggggtgccct ggctgggaca catggaccta cgtctacagc gctccgtgct
      841 tgcgttttcc agaggcaccc ggccgtcgtc ccgggttcgg tgagctccaa cccctcccca
      901 tcctcacccc tgagccctcc ttccatccca ccatgcttaa cgcttccagg taccagaggg
      961 cgggagtgaa atgcggagg
//
LOCUS       KCLA01002621            1012 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42649upu ultra-conserved element locus uce-6424,
            sequence.
ACCESSION   KCLA01002621
VERSION     KCLA01002621.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1012
                     /note="ultra-conserved element locus uce-6424"
BASE COUNT          347 a          187 c          147 g          331 t
ORIGIN      
        1 aggcttttag cattaacata taacttttta gctgactggc tttacagtat tcacattcag
       61 tatgcaggtc aactcaaaat ggaataaaac cccaaatgga ttagttatcc caatttaaat
      121 ttattttaac tttattgata attttgcact agggagactt gaatcttatg gttaaaacac
      181 acttgaaacc aattaggagc catatgacca cattctagca caaagaacaa aagcaactga
      241 cagtttcaag attaagccac aaccattccg tttaaaacag aaatattttt accttatttt
      301 ttaaaggttg tgtatatctt aaaaaaaaaa aaggtgtaat atggcgaatg acacaatgct
      361 tcttaaaaca cagtgatacc cagggactct cactctctct ttaatgatcc actgctctca
      421 ttcagctgtc tttctttttt caaatcttta catatgtgac agctctcaaa agtagactgt
      481 agaccatctg gcattttcag aggtgtaact tgtgcaaatt cagctctact gggaacacaa
      541 tgctatcttc tgcctgcgtt ataaaagata caatagaatg tagaacttat gagttgtttt
      601 gaattattca ttttttgcct gtatattcaa gaaattttac aaactctgca ttttgtacta
      661 cataatcaca tgcgttaaag gtacaaagaa actttttgac acctcttttc tacagaaaga
      721 tggcattttg tttgatatgt gaacattctg cgcctgttat atcattctaa acaggccatg
      781 tgctgctaca aaagatccca tttttcactc tatgtatgag caaaaatgtt attcttgata
      841 ttcagaaact aatgcaatac acataaaaat ttcaaataca agttggatga acattcagca
      901 tcttcaaatc atgatggcac tggtcactta ctatacgtta aaggtaaaaa aattcctcac
      961 acaacacaga aatattgtca tttcaaacat gcacaatgaa tagtttcaag tg
//
LOCUS       KCLA01002622             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42664upu ultra-conserved element locus uce-532,
            sequence.
ACCESSION   KCLA01002622
VERSION     KCLA01002622.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42664upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-532"
BASE COUNT          263 a          139 c          105 g          220 t
ORIGIN      
        1 gagatgtgaa agcacctcag cacttcatac actggttaaa ttacttcatc tgaaaacagc
       61 ttctttctgt ccccccccaa ttatattctt tttcactgtg tgtgagaggc cagttgtatc
      121 tgtagtgata ctgtaacacg actgtaaagc agactaccat tcaatagctc tttaatgtca
      181 accataacct tcataaatgg atttgtaatg agaaacccct gtttgtcatt cagtaggtat
      241 gattgatgct gtatgagtga agccacagtg accatctcaa taacatgaac agctgccaaa
      301 tattcattta gcagaatgag tttaaaaaac tttgagcaga ttgctttcac aaggctgctt
      361 tcaacaaaag gaaacataat taacgagcta atatcagcat gtgtctggct aagctaatga
      421 atatcaaatt acacagaaac ctgtataaat catcattatc ctgaatttta attgaacctg
      481 caattaaaca tgacaaattt tatatacact aaacctttaa tttatacgtt caaataagaa
      541 ataatttatc atttttagta tttcatagtt aatttcccaa tatgtacact tctaattaac
      601 aagacagaca ggcatttaaa agaaaaaaaa ttcaaactgc tcaatagctg caatggttac
      661 accaaatttc aatagactaa aatcaagggc caaaaactta gagaaatgca gcaatcccct
      721 acttatg
//
LOCUS       KCLA01002623             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42680upu ultra-conserved element locus uce-157,
            sequence.
ACCESSION   KCLA01002623
VERSION     KCLA01002623.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42680upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-157"
BASE COUNT          154 a          211 c          148 g          127 t
ORIGIN      
        1 tggaagaaat ggttttgctt tcctcccctc ccccttcgag gaatggtaag aatttcctat
       61 tccaacagac aaaacccccg gcagataaca gttctgttac gttctcaccc gtaaacgcgc
      121 ctctgcctac agcatgaaga agagccacca gcaattcccg aaagcattct gtgggcagat
      181 gcagagccct tccccggata catttcctag aagtccctca tccagggctg agggcaggag
      241 ccgggctcag gatcccgctc ccaaatgcca ccttaaggcc tacgggctct cacaaataac
      301 cgagaaaaca gcaacaagct caagatggcg atgcagcacg gctcccgcag cagcagccag
      361 taataaggaa ggttattcaa tcccattagc cttttagccc aaagaacccc tcctcctccc
      421 actcactgag cctctcactt acccttcccc ttggcctctt cactgaagac attttgggcg
      481 tcaaaggctg gccctgggct ttttcagcac cgcaggcagc gctcaggaga aaagcattgc
      541 aagaagattg ctaactggcc tgtttggcga gcagcagccg cggcgcgcac agccctccac
      601 aggcgcgggg ctcgtcacca tggtcctccg ccgccgctcc
//
LOCUS       KCLA01002624             589 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42696upu ultra-conserved element locus uce-5692,
            sequence.
ACCESSION   KCLA01002624
VERSION     KCLA01002624.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 589)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..589
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42696upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>589
                     /note="ultra-conserved element locus uce-5692"
BASE COUNT          173 a           98 c          125 g          193 t
ORIGIN      
        1 gttgttgtgc tctgtgttat tgtgtttatg atcaattaaa ataagcaaaa aatggtctta
       61 attttaactt tcttttttgt tttcagtggc tgcatcaact gctaattcca cagctggtgc
      121 agccatgaat tctttgactt ctctgggtac tctacaagga ttggctggag ccactgttgg
      181 actgaataat attaatgcac tagcaggtac cgtaaacagt gagtatttac tgctgtggtg
      241 gacagccttc cccaataatc atgccacaaa aattatccgt ggtaaagtga cgatatgatt
      301 atttttaatt gatacacaaa ataaggtgat cagattgatc tagttccatt catggtacat
      361 atgcagttct gaggtcttaa gtttcatgta gtttgctaag caaagtgaag tacctggggt
      421 ccctgcacaa agatgccttt tcctgcaggg catatggaag ataaaaaaaa tgtcaccagg
      481 aatctgagat atctagatta taggagaggt ttctcttcca tttagggtgt ctgacaacag
      541 gtgtacaaag gttctctcag aaatgtagtg ataagaaata tatttgcta
//
LOCUS       KCLA01002625             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42710upu ultra-conserved element locus uce-5397,
            sequence.
ACCESSION   KCLA01002625
VERSION     KCLA01002625.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42710upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-5397"
BASE COUNT          220 a          183 c          154 g          190 t
ORIGIN      
        1 tgtctgctgc agcccactca gctataactg aaaaaattta cccctaaaga aacaaaaagg
       61 taaattccaa tcccttccaa tcctgcacaa gaattcaaaa caaatccgtc ttgaaagata
      121 tccctgctgc cctcttctcc aacaagctaa atattggctg ctaaaagaag gcccactctg
      181 ggctccctcc cgtcttacgt gctgccccac ctaccgggga taacactaga gctgctccca
      241 aagcagaacc tggcatggca agggttaatg gaggttgatg gggaggggag agtgagagga
      301 aagacaatag ctccacactc ttcccagctt gtttgatgga gatgcgacct ggcagcattg
      361 aaaagcttca agattaatgg agaaaaggcg gaatctgaca gcttttccgc tggtttcact
      421 cctcctgggt gggccgattg ctcttgaatg tcacttgcta cttaatcttg tgtatctgaa
      481 acagactgac gtgtttgggg agccctgctt gctctgtata gacatcaatt ggcaaggcag
      541 ataaaaggaa actgcattga attactctct tatgcctttt atagagcact ttctgactac
      601 aaaataatta gtagctccat ccaacgaacc ctgctttaaa caccaaaagt aaggaggagc
      661 aagtatccct tactctcttc cagctgcttc agaggtacca tgaacctaag acatgtttat
      721 tctcaaatgg aaacatctct acataat
//
LOCUS       KCLA01002626             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42740upu ultra-conserved element locus uce-1925,
            sequence.
ACCESSION   KCLA01002626
VERSION     KCLA01002626.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-1925"
BASE COUNT          236 a          214 c          176 g          258 t
ORIGIN      
        1 gctttaacat tgcatccaag aatccagacc agttgcaaga acagcctctc ctaataattg
       61 aattagccgg atgctcacag caaagcacac ttgctctcac gccctccctc cctctaccct
      121 tttgaatctg ctgactggat gggcttccat aatgtatgct tcttaggaac caatttcagt
      181 aaatgatcaa aacagtaatg aagaggcttc tatggagagt ctcacacaat agctcctcgt
      241 agctcttata tatggattcc tccagcccat gaatacagat ctataagaag cacaatttaa
      301 tggctagtat gggcttcttc tttttgtctg aaatttagca aagttttatt ccagctccct
      361 ggagtcctcc ccaagtctat ctaaaatgca gttagagcag aggctgtctt ttgcttcaca
      421 gagcgtctgc cttatgcttt catcagagta gtctaactca cacagatgca ctatttaaca
      481 atgccatccc ctgctttcat caggaggggg aaggttgcag agctgagccc tgaagaataa
      541 ggggggcagg tcccctgtga tcggcgaaag ctgaacatcg gtgccagttt ccatctgtca
      601 tgatagccta tctccgaacc ttcaatctgt caaaagcttg ctgcctagct gaaggctcca
      661 ggagatttgg tgcactaaac acatttgaca acagcattat cactgcaagg agcccagcaa
      721 aatgccatca atgtgttaat tgtagccagc tatgtaaaat gtcacttccc atatcatttt
      781 acagcagctt tgcctatttt gcagctccta attttccacc ctttataaat atgtggactg
      841 ttcatgtgga aatgtggttc ttttcgtgtc agctatggtt tgga
//
LOCUS       KCLA01002627             840 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42756upu ultra-conserved element locus uce-6723,
            sequence.
ACCESSION   KCLA01002627
VERSION     KCLA01002627.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 840)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..840
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>840
                     /note="ultra-conserved element locus uce-6723"
BASE COUNT          246 a          176 c          168 g          250 t
ORIGIN      
        1 tatgactcac aacgatggtg gagcgtgtgg ctttggccga tatgggtctg ggctgaggag
       61 cgactgctta gctcctgagc acaggcgctg ctgctccagc ctgccatgcc tttgcttttc
      121 caaggcactt gattcaccga cagccggcaa cacgaataaa ttacaaaccc gcatttaatg
      181 ttagtgactc tttaaatgga atttttcatt caaactttgt cattaaaata gaaaggcctt
      241 ttggttgtgt ccatacaagc ataataaatt gtatatgttt gtgatactga atgaatcttg
      301 cccatatgct gcactgcaag gctacatgaa tgaagcattt accaaatcag gcccaccaca
      361 ttaaacagaa aaacaatctt tattcatggt aacttatcag tttcaattaa tcaacctcaa
      421 caatagaaat tctgatgtgt tcaagcaact tgaaagcaat aggtcatctc cagggcagcc
      481 atgttgtgtc tttgtgccta tggtttcgaa caaagcaaca tctccaataa atgtacatcc
      541 ccacacacag atgtgtgcct atatgtgtat aaacattgag gcacgccgac ggctgcggtg
      601 aacactacgg atgtacatag aagtgtttat ctttttgtca tacaaaaagt aattgttttc
      661 tagtattttt ggagctctgc aagtttaaac aaaaggaaag aaatttccat tggatgacca
      721 tcctttcaga ttctctgctg ctatgtgaat agcattgtgc aaaccattcc aatggtattg
      781 aaaaggggta accattggtt tgatttggtt acacggtttc gtaaagagct ccctcccact
//
LOCUS       KCLA01002628            1016 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42786upu ultra-conserved element locus uce-2911,
            sequence.
ACCESSION   KCLA01002628
VERSION     KCLA01002628.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1016)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1016
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42786upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1016
                     /note="ultra-conserved element locus uce-2911"
BASE COUNT          243 a          255 c          247 g          271 t
ORIGIN      
        1 aggcttcaag gcagactgaa aagttgacat acactgtagt ggaacagtca atagaagact
       61 taatgaccag tgggtccaca tgtgacaaag ggtacctgca ctggactcac tgaagtcccc
      121 tgtacctctg ccactgatac tggcttaagg atgctcctgg gatggtttct gacgccagct
      181 ttctgctttt gcctacgtgt acaggctgct ctgttggctt tcccaaggat caagaggccc
      241 ctctctctgg gagatggccc tgcgtagatg gctacaatga attaaatgtg aagtagacaa
      301 ccctgataag ccgaggatcc tccagaccaa tggctcctac aaagacctgt tactgaagcc
      361 tctatttcat ggcattttct agagggttct ggttaaaaga ttacctaggc agttgattga
      421 gtgtaaaaca tgctgtacct gcaatgttct cctgcttggg gcaaattcct tttgtaggcg
      481 tgagaagacg gtcttcttca tcgggtgtga cttggatccc gatttccact ggctctgaca
      541 ctttcctgag ctcggcgcgt gaggaggggg gagggctgct cttatccatg ttcttttcat
      601 agcaggcacc accagtgcca ttgcactgtt ttctcttgtg ctctataaaa accaagatgt
      661 ctcccagcgg gaagttcatc tgacactgtc cacaggttaa caagtctggg tctgtcccac
      721 ctgcggcgat gctgatgcca cccggctctg ctattgccag ggtctcatcc tcgtcggcga
      781 gtgccggttc cacatggtca gcctctgctt tacaaggaca aggagaaaga gggagcaaaa
      841 ggggtagggg agaagagaaa aagattgctt tgaatgttca tgacactcaa gcatgcatca
      901 tgagaggccc agcctccccc caccccccaa aaaagccaag cctgattaca tctttctttt
      961 atttttcagc ttttccgctc ttcagaatga tttcaatata ttttgcaacc aagcct
//
LOCUS       KCLA01002629             378 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42802upu ultra-conserved element locus uce-5554,
            sequence.
ACCESSION   KCLA01002629
VERSION     KCLA01002629.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 378)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..378
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42802upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>378
                     /note="ultra-conserved element locus uce-5554"
BASE COUNT          125 a           92 c           57 g          104 t
ORIGIN      
        1 tgcggacagc taatctgtat gcttatcaca gcaaatcctg atgcgctctg tttttttaac
       61 actttgcaac ccaaaacaac tcataaaatg tagaacatat taaacttagc cctgctgttg
      121 aacaagcaca ccttattctg caaatttact gaaaacttaa tgaaagcata gaattcacta
      181 attcttattt ataagcagca gcataggaaa gtcccttgcg ggagtaaaac aaacaaaaaa
      241 gcctcattaa atatacaaaa acgttttgct tggaaggact caaaagggtt gttttcccta
      301 tggcctctca ataaaataac cctatctgcc cccttcaagg ttgccctccc cctattctga
      361 gtcaagcgac ctccgacc
//
LOCUS       KCLA01002630             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42817upu ultra-conserved element locus uce-268,
            sequence.
ACCESSION   KCLA01002630
VERSION     KCLA01002630.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42817upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-268"
BASE COUNT          188 a          135 c          158 g          168 t
ORIGIN      
        1 agggaaaaaa aggcagtgct gaaacggtat gacaactgcg agggtgtgct gcctcttccc
       61 acattcctgg cgagacagat ggtgttacat gggacacagg gaggtttgtt caaacagcag
      121 caaccttcaa agatcaagca gagcccagcc cgccgcgcgc cattgaggga cccgcgctca
      181 tatgttgctg agttgcataa acaaacagca acagctgttt tgtctccccc catcgccctc
      241 cgaggactac tataaacttt agttgtgcca ctgttaatat gatacaatca ttttaattta
      301 ctaattgtaa atgccacgag caaatgagag gacttttcaa caccaaagct accattcata
      361 atgcgccagc gccggcgcgc tctcgcatgt gaaatttcag gcggttacgt tggataaata
      421 tctaggcggg ttgttagggt ttttttttct ttttcccctg ggtgttttta atgatagcga
      481 aaaaagaaaa gacgcttgtg gtggatctgg ttaggaaaaa tacgggtgtg gaaacacgcg
      541 tgtccactgg aaaagccatg gggaaagaac tggagaatca actattattt atattgattt
      601 aagatagggc aaagggttct cttaaaaatg ctaattgcaa gaattgcca
//
LOCUS       KCLA01002631             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42833upu ultra-conserved element locus uce-110,
            sequence.
ACCESSION   KCLA01002631
VERSION     KCLA01002631.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-110"
BASE COUNT          206 a           90 c           72 g          139 t
ORIGIN      
        1 aagtgctcat actgaaaaca tattccatac acagttagca ataaagtctg tacaaaagta
       61 gtaaagttct gcgttataaa aaatactcca taactctaat ttaaaagagg gaaagaagac
      121 aagggaattg atttctcggt tcatataatt tattgcagtt agcacacagt ttaaaaattc
      181 accaacacac caatggtaca aaactaaaca gcattataag ttattccccc ctcaggaaaa
      241 taaaacatac tatgattgtc aaagctagat gtcagtctaa gttttagaac aaaaggagaa
      301 tatgaaacta aggagaaaaa caaagcaatc actcacaagg accacaaaaa aatccaagag
      361 aaagtccgtt ttcttcagat gctgattgtc ttctctaact taagaaaaaa atgtagtctg
      421 aaaatctaga aactattcaa gtaactaaag ataatgctcc aaggccattt tcacagcttt
      481 ttttttcctc ttttaaatgt cattaca
//
LOCUS       KCLA01002632             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42849upu ultra-conserved element locus uce-690,
            sequence.
ACCESSION   KCLA01002632
VERSION     KCLA01002632.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42849upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-690"
BASE COUNT          248 a          163 c          186 g          245 t
ORIGIN      
        1 ggaagcctaa caaagtcagt cacccctccc ttaagtttat gtgatcatca ccttcgttat
       61 ctactgggga ttccaacgtg tgtgggagca tcgtgcagga aaacctgagt aacacaggca
      121 tgggttagac attccaagca agatattttg cagcagctgt catttggtct gaataaacga
      181 atggagtgac ggtgagggga catgaaagac taggtggctg atagtcacag taattcagaa
      241 ttaattcaga ttctcttcag tgtgagtgat actgagccat agccatgccg aattcagcat
      301 tttcttttct tttattttta ctactggcct ctttaggacc tggaaaaata ctactgttga
      361 gctctttggg attctttctc accggggctt taaaattcta aagaacagat aagagcaaac
      421 agcaaataac tggatttaga ataaactcag aaattatcgc taaggccctt cctctgccac
      481 aatttgtcaa atctgctgat aggaaacaaa ttctattcat aaagatttta ttttttgggg
      541 ccctcttgtg atttggtagc aattcaatta tagttttgtg agatagtgag cccggagagg
      601 gaatccagac tgacaagaaa tatgacagga cagttacaga gtgtttatgc aattaaactt
      661 tccctgacaa tacctgcgga atgatgaatg cctgggcgga ggtgtgtgtg cacaagcaat
      721 gccccacaag tattgcacat ttttcattat tatacaactg ctcagatctt tcaagaatag
      781 cctgaagtga ggtggaaaag cgagtgctgt tccgcagcat gttaaccaaa tgcctcgcta
      841 tt
//
LOCUS       KCLA01002633             526 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42864upu ultra-conserved element locus uce-6987,
            sequence.
ACCESSION   KCLA01002633
VERSION     KCLA01002633.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 526)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..526
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42864upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>526
                     /note="ultra-conserved element locus uce-6987"
BASE COUNT          141 a          126 c          131 g          128 t
ORIGIN      
        1 aggagctttg gcaggccagg ctccacaggg ctttaccagc ccagctttgg ttctgccctt
       61 attggtgctt aagaggttaa gacgtgattt gtgcagagaa agacagagag aggggaatcg
      121 gtttgtctgc agcttcccaa gtcttgctta agatcctttt caattaccat ccatttctcc
      181 tttaaaaagg gacaaaaaaa cagcagtgtg gaagcgggtc agggcagccg gtgacaatga
      241 cagtgtgatg ggcccgagcc ccccgccgcg tttccatctg ctatcattaa ggtgactact
      301 cagacatgaa aaaatccctc tcgctgtgct gacaggcagg catcaagaac tatgacaagg
      361 cattaggaca caaagtagag acggggatgt catattctgc aaacagtcct gcctctctaa
      421 aattttagcg gaatttcaag caaaacggct tttacctgcg ggttatcaaa gtttccctcg
      481 cattagcctg acagtgaaga cagtgctgac agtcagctca gctcct
//
LOCUS       KCLA01002634             235 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42878upu ultra-conserved element locus uce-7533,
            sequence.
ACCESSION   KCLA01002634
VERSION     KCLA01002634.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 235)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 235)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..235
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>235
                     /note="ultra-conserved element locus uce-7533"
BASE COUNT           64 a           37 c           48 g           86 t
ORIGIN      
        1 actacattac aggatatgat ctcggtgtag tgcatataaa actgcagatt gattttcctt
       61 gagtgcttta tactgtttaa ttacatctcc atgtagggct gaaaaaaatg acctttgttt
      121 atatataaac tgtgttgctt ttgatgttgt gttattgcac actgacctgt gtgcagtaaa
      181 gtttttgcat atggtccagg taaagcacga tagccttgca agttaagtac tgctt
//
LOCUS       KCLA01002635             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42893upu ultra-conserved element locus uce-1832,
            sequence.
ACCESSION   KCLA01002635
VERSION     KCLA01002635.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-1832"
BASE COUNT          335 a          208 c          160 g          283 t
ORIGIN      
        1 ctcatcagat tatggtttaa gaacacacag acaaattttc atgtgaaata aaaagcttaa
       61 aagatattta aaagcaaaga aagatgggaa agcaaacgta aagcttgtca aaggactcac
      121 agacagaaga aagtagccag atcaaaccat gtgtgcaaac tcagaaggct gacatggtat
      181 cacaacgcat aaagagtaga tctatctgca ttttagtagc cctctatcta atcttcacac
      241 cctctggaaa aagcatgttc agtagtattc cagtgcacac actttgttta tgcttattaa
      301 ataaaaagaa aagatcacct tcaaccatat taatgatgga ctggtggatg aaggatgtct
      361 gcgaaaattc acaacatctg tttgctccac tctcttctca gcgtgctgca cctattcctc
      421 atgcttaatg atgctcatcc actctgcaag ttttacgaac aaatgtgtgt ttagccacat
      481 tcatcattct gaatgagcgt tcttgatgaa gcatccactg gcctgtttcg cactttctgc
      541 tacactttaa caaatgacaa ctgctctatg tacttttcat ttgttaaaaa taaaaagcta
      601 tgtgaagaat aggcccagca aatttttctt ttagtcctct ggtaacttta ctagaaaata
      661 gaataccaca tgcatttaag ctccatacaa gttcacacac acaaatctaa atggtgcata
      721 tagatcttag tattttcaaa acactataca gcagtgtttc aactacaaat cataaaaaca
      781 ttctatccca ctccaacaga ggtaggtcta tcttctgata aaaatcatta ttaggtctca
      841 ctatgatcag ctaagggact ggttctgtga ggtacacaat gccttgacac gagacacctt
      901 ttggtaccaa gccagtaatg catcagtgga gatctgcctt ccatctgtcc tcctcgaaag
      961 cataccaata tttataaaaa aaaagt
//
LOCUS       KCLA01002636             500 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42907upu ultra-conserved element locus uce-5334,
            sequence.
ACCESSION   KCLA01002636
VERSION     KCLA01002636.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 500)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..500
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42907upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>500
                     /note="ultra-conserved element locus uce-5334"
BASE COUNT          169 a           91 c           90 g          150 t
ORIGIN      
        1 aaagacaaaa gtaacctaag ctgtattttg gttttgtcaa taaaatgtag ctcttaacaa
       61 tttcaaacac atctttctaa ggtaatattt acctcttcac atctttagca tctatcagac
      121 atgacatggg acatattcat tgaccctaaa aattttcatc agtctcctgt gctggaaggg
      181 ggcagcccca gccagacaag aggctcattt caattttaac ggctgtaatt aaaggttaat
      241 tcactgagtc agaattaacg aggaaagtac aaatgatagg caagcagctg cctttataat
      301 acaggattag aacaatgcaa ttacaataag aattagaaaa aatcaacttc ctgaaaaggt
      361 tctgtaatga atgagctgca tttctgtatt cacagaaatg gtacttcaac atgaagactc
      421 cgtgcagcat ttttttgttg ctgtactagc actttattag cagtgtgtct aataagatag
      481 tatgcctgct gcaatgacag
//
LOCUS       KCLA01002637             320 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42921upu ultra-conserved element locus uce-6390,
            sequence.
ACCESSION   KCLA01002637
VERSION     KCLA01002637.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42921upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>320
                     /note="ultra-conserved element locus uce-6390"
BASE COUNT          107 a           55 c           62 g           96 t
ORIGIN      
        1 tttaattgtg catacatatt tttattcatt aaaatgaata accaataaaa ttccacacta
       61 tggtgtcaca gactcgtaac acattaataa agtttcttaa agcttttggc agggggccag
      121 cacagtccat taactccttg caagttgtaa aaaaaggaaa gtcatttcag gctgctttgt
      181 ggttatgaat gaaacagcag gcagtctgta tggaaacgtc actttggata tggcattggt
      241 aaaggattct tagctgctca atcaaaccag tatgggaata ggttaatgca ctgaatcaca
      301 atataaatcc tgatgcactg
//
LOCUS       KCLA01002638             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42936upu ultra-conserved element locus uce-2096,
            sequence.
ACCESSION   KCLA01002638
VERSION     KCLA01002638.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42936upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-2096"
BASE COUNT          185 a          110 c          129 g          232 t
ORIGIN      
        1 gacctgaaca atctacctgg tgaagtggta agtcttagag atatttcatt ctttttttct
       61 tacatagatg cttgaattac tggtagttat ttttgtcagg ttttgttaac tgctataaaa
      121 ggaataaggg ggtgaaaagc gccaagtgtg gacacctgta tttgagattt ttaccttttt
      181 gacagctaaa gagacattga atggaacatc atattcctta ttgtaaaagt aagatcataa
      241 ttatgaagct agctgcattc attaggcata gctgctttaa acgcaagagt ctcttcatct
      301 cattttaatc attatattac aaagtaggca tttctgtctg cctagtggca tgtcttgcaa
      361 aagaacgagg gagtttttga aggcaaaaag aagaaggggg ccaattatct gcttctgctt
      421 ccctgccacc tgccagctct ttccttttaa ttaatggtct gatggcactg gtcaatataa
      481 taagaaatgc ttgtacagtt ggggtcagaa aattcaggct ttgatcttca actttctgaa
      541 acatttattt gttttttcta aattatttca gttttatttt aatctcttct gtcctgctga
      601 ggtctgcatg aataaaaacc tatacatttg ctttggcgga gcaaaggctg cttact
//
LOCUS       KCLA01002639             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42951upu ultra-conserved element locus uce-7010,
            sequence.
ACCESSION   KCLA01002639
VERSION     KCLA01002639.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42951upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-7010"
BASE COUNT          279 a          148 c          145 g          258 t
ORIGIN      
        1 tgtatatgtg tatgtaagga ctgcatgatg tgtgtatgta tagacatcta aaaaccttgc
       61 tagtatgatt tagtataaca tttcaaaagc agaaagagaa aggaaaaaca gaaacacaat
      121 tgtgattaat cacgctcatt atcaaaacag acttctgacc tgtgtcaatt ttagggcatt
      181 ttttttgatg tgtgtgtgtg gtagtggatg ggaggagggg tgtatgtgtg gggaaccaga
      241 gatgaaaaat acgctccttt ctctgctaat aaaatacccc ttccaccccc ccagttttta
      301 accttccctc caaaagttaa gtagatgtct aaaactgact aaagccttat tatttagtta
      361 actctaggtg gtttccatta gccttacagt acatgccact gagcagacat acagtaactg
      421 aattgtttca acttatccaa ataacattga aatagactta attgttgaac tgcaggaaag
      481 accatgtgtc tccagagact attagtgtca tttaaaaggc taaatgtatc ataaaacctg
      541 tctttagcag aataaaattg tacagaccaa cacaatttta gctaatgttt tccacatttc
      601 ttgtaaaaaa agtcgttggc tgtaaagcaa agttcataat acttgtagga gttatttcag
      661 tgcagcactt cccaacaagt ttgaaaccac catccttttt actactgagt agcagctatg
      721 agagcaataa cactgaaatc tactggaata acttatagac catatttcta tttattatta
      781 gcaagcagaa tattcaagaa ggctaatttt actccctcaa catttaaatc
//
LOCUS       KCLA01002640             338 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42965upu ultra-conserved element locus uce-2400,
            sequence.
ACCESSION   KCLA01002640
VERSION     KCLA01002640.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42965upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>338
                     /note="ultra-conserved element locus uce-2400"
BASE COUNT           75 a           69 c           67 g          127 t
ORIGIN      
        1 gggacgcgat ttttcaaggc tgtgcataat tgcgctccct gtgccatcgc tttctgtcct
       61 gtccttgtca gattgtcatt gaaggctgat tccaccctct gtaattggag atgttctact
      121 tttggacaaa ggtgtggggg cagctcaggg gaacagcgct gacatttact tcatcaattt
      181 atttttattg ttcctacatt tattgcagct ataacagccc tttaatagtt atatctcctc
      241 cctgtagggt attctggtat ttgaaatttt tttaactcat ttgttctcag ataacagtaa
      301 agtgcatttc aggataacct ttaggtttca atcttctt
//
LOCUS       KCLA01002641             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42981upu ultra-conserved element locus uce-5555,
            sequence.
ACCESSION   KCLA01002641
VERSION     KCLA01002641.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42981upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-5555"
BASE COUNT          234 a          131 c          118 g          181 t
ORIGIN      
        1 ttttaacatt caagatcctt gctatggatg tagaaaaata aagaagggtt gcagcccttc
       61 ccattggtaa taaactactc cataaacaaa catttgctgt ctttccctct taggaaaatt
      121 acctttaatg cccagataga ttttccaata tataggtcaa tgtcccaacc ttttctgaag
      181 gaaaaagaga aatgcccctc acaaacaaga tcagacatac cgtatcttat ggccctgttt
      241 gcaagcacca aaatcaagaa ctgcaataga aagctatcaa ttcattttgt tgtaactgta
      301 tgcacctgtg aacaactgct taattaaaga ggcaaataga aatctctcac aataatactt
      361 ccaattactt gcatttatgt gactcaatta gttgagtgga taaatacagt tggaaagctg
      421 ccatgtgaac ctctggaaat acagaaaaga tacaactgaa gagatacaaa accaaatggg
      481 aggactccag gagataaata cagataattc tcaggggttc ataggcctac acaaacagag
      541 aagatacaga aaaaagcttg tgtgtaaata tatatacaca cctcatgtac tgtcactgag
      601 ctctgctttc acaggcagca acttcaatgg aattgtttgg tttgggctca gattttgcca
      661 ctgg
//
LOCUS       KCLA01002642            1003 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 42997upu ultra-conserved element locus uce-1893,
            sequence.
ACCESSION   KCLA01002642
VERSION     KCLA01002642.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1003)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1003
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="42997upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1003
                     /note="ultra-conserved element locus uce-1893"
BASE COUNT          300 a          229 c          210 g          264 t
ORIGIN      
        1 gggttgtcat agaagcaagc tatcatcagg gtttagaaac tctgaaaaat aactctttgt
       61 gtctgataaa acaaaaccaa accggaggaa acagcttctg agaaggcagc ttcaggcagc
      121 tctccatgcc aagtcaagtt cattagggga ctgcaccctc ggcagtgatg caatactcca
      181 ttaccctctg ctttagctga tttattttaa gcacaggaag aaaagtcaag attcaacaca
      241 gaaggagaca attgctcttg gcctgttgtg gctgagttta cgcgtagagg agccttctgg
      301 tctagttgct gaaggggaaa caagtacaaa tgtctcggcc ttggctgtta gggtctgatt
      361 ataagcactg tgctagagaa ttcatggatt attcatgtgt aattacagat agctattgtg
      421 ctcttttaaa tcatccctat ggcccattat ggcccataac aactgaaata gcaattgtca
      481 tagtaaggtt tgggctctgt catagagtgt aggctctaat caataatgat gaatggtaaa
      541 atttagcatc aagcaggaga aagtctagtt gcctcccgcc ataaatctgt acaaatagca
      601 agccgtgcag ctgctggatc tggaaattta aaaggcaaca ctctccctcc accccctaca
      661 catgcacctc tataaaagtt gaaaaaggag aaatgtgcaa tatgtcaatt ctaataatcc
      721 acatgctgtt aagacacttt tctatttatt caaagcgggg tgaaccctag gttgttttca
      781 aggtcaattc caggtgaaaa gggggtcatc tggaggccac ctcggctccc atgcaggtca
      841 ataacgcctc ctcgctgccc cagaagacaa gctgctcaca cccaatcaat ccaccaacgc
      901 tgccgctgca cccagcgtaa tgaacagtga ataaatgtag cctatcatca caaaacatgc
      961 tttttaagta ccttcccttt tcatgtaaaa cctctcgctg tca
//
LOCUS       KCLA01002643             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43012upu ultra-conserved element locus uce-1526,
            sequence.
ACCESSION   KCLA01002643
VERSION     KCLA01002643.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43012upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-1526"
BASE COUNT          264 a          142 c          175 g          286 t
ORIGIN      
        1 caccgctgct ttaagtttgg gagcagtaat taaggagctt tcgggtgagg aagggcaata
       61 ttaacgtggt cacgcgtcgg tgtgaacccg aggaatatct cttcaagcaa cgagccaggg
      121 tgtaaatgtt gagtctctga atgagggagt ttgataaccc tccctgtaac ccagttattc
      181 taacgccctt gttctgaatt gcgttagttt tttgcaaact catagagcca ggtaattgat
      241 gcgagggaaa ttctcgtcac atatttattg cgctatcagc tgaatttttt aagcgacgag
      301 aagcaaaata atcattaatt tttatagggc aaggatctgg ctttttgttt gacacaaagc
      361 tgtataaaaa actgcttctg attttatgca cattgttttt agttaatgat tttcagctgt
      421 ttgttgttcc tctgatagca tgaaaatgta ccatatgctc agccaaaaga caaatgatta
      481 gcaaatgaaa ttctggacag ctgtctgact gaaagcgttt ggttgatagc attctgctat
      541 cataattagc ttaagctttg ggttaattaa ctttctacct ggatatgcat aataatagca
      601 aactgcaaaa agcaagaagc tttcagtaca tcaacaacat tgctgtcttt tttatttggt
      661 atttcaagag catattagaa tttcaagagt gattaatcct gggaatattg tcatctactg
      721 tagattttat ttgcaagcca gataatactg aaacaattgg aatctattat acagcagaaa
      781 tagcatttta aaattgtaat taaagtttct aaaagcaatt gctaatttca aatgcctttg
      841 ttggcaggaa tattaggagt cctgctc
//
LOCUS       KCLA01002644             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43028upu ultra-conserved element locus uce-6346,
            sequence.
ACCESSION   KCLA01002644
VERSION     KCLA01002644.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43028upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-6346"
BASE COUNT          218 a          117 c          126 g          281 t
ORIGIN      
        1 aagatgggtt caatgttgat cttcctagag gaatttcgct ttgacagata gatttgtcta
       61 aatttttctt ttaaatcatt tcacttaact aaactggtag ttgtaaagct ccaagactca
      121 ttgttttgaa gccttggagt agttaattac agctataatt agttcagcac tacagcttat
      181 ttaaacaacc attataccat cttcgtcttg aggaaatgat gctttactga gaaaacagag
      241 ttaaggtttg cattcagaag tattgtttgt tgaacatata tggttgtatc caatagtctt
      301 attcagtgct acaatctttt tgaacaggga atggccaaat ccagtgctat tgaaacagcc
      361 agaagaatgc aatcttaatt tgcctgtatg ggacccaagg gttagtgtac tattttttcc
      421 cctataagtc acactgtaca ataaatttgg ttgcataaag aattctaggt gaactccatt
      481 tctggtttat taaacttagt attttggtat tatgtagtct ttattaataa tagttctcct
      541 gaatgtggaa cgaagtttaa ttttctaaac tggccccttg aagcaaactt gttgaacatg
      601 tactttttac tttcagcttt tgcagtgtga tcttagatca gcttaattag atgacttaaa
      661 gccatgtttt ttcctaaaac tctttatctt aaaatggttt ttttctgact tcaaacttat
      721 tactcttgta agtgtattga at
//
LOCUS       KCLA01002645             913 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43042upu ultra-conserved element locus uce-3016,
            sequence.
ACCESSION   KCLA01002645
VERSION     KCLA01002645.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43042upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>913
                     /note="ultra-conserved element locus uce-3016"
BASE COUNT          247 a          205 c          173 g          288 t
ORIGIN      
        1 gtatggtatc ctcctgcata caaatctgct cagcagaaaa ctattgcact tcaactaggc
       61 atcaccaaac agaggaagaa ctggttcacc agactcagtc cctcctaatt ctctttatat
      121 cttaataatc ttcttcctgc cccaacattc acaaaagtta ttccatcaac ggaatgatct
      181 gtgtctggaa gtgcaagagc tccgtgagaa aagcactagc gttaccactc gcccgcgtac
      241 cggcgtctca tccctcattc tgctttcaca atgaaatcta atggctgcgt ggtgagggac
      301 acgtttgtac catccaatta caatctcatt gcctttcttc ctctcttttt cagaatgttt
      361 ttgtagacaa accagcattt ccagaataca aagtttcgga tgcaaagaag tccaaattca
      421 tattgttgca ttttagcact tttaaagctg gctgggactg gctgatttta ctggcaacgt
      481 tttatgttgc tgtgactgta ccttacaacg tttgctttat tggccacgat gagctgtcta
      541 cgactcggag cacaactgtc agtgacattg cagtggaaat tctttttatc attggtaaga
      601 tacggttgga atcccttttg acacttaagg ttctcgcgga atgcatcatg cagaaaaggg
      661 agtaagcatt gctttcgtta tttagaagta aataagttta agctgctact tggaaacttg
      721 attacttttc tttatattga ttcacctagt actgctgtca ctcaaaaggg acttttgacc
      781 tcaaggaggg ttgaaaactg attcatcctg tggatgctta aaaccttccc gatgtagatg
      841 tgcgccctgg aattactata ctcctatcca taacatactt tgattctatt agctttcaca
      901 ggcagttaga caa
//
LOCUS       KCLA01002646             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43057upu ultra-conserved element locus uce-4988,
            sequence.
ACCESSION   KCLA01002646
VERSION     KCLA01002646.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43057upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-4988"
BASE COUNT          190 a          162 c          130 g          220 t
ORIGIN      
        1 tttttttatt ccatttttcc caaagtcttc tcagttgata actttcataa ttaaactgtc
       61 cgtcacacag ctatttcagt gttcaaagca ggcactgctg taaagatttg tgccttctgc
      121 tctccatcag agatgcagaa aagcagcaga cacagccgtg tgtcaagaaa gcagggagaa
      181 cccatgtctc tgcgaacaaa ccatgtattt ccagggttca aaggacaatg agaaagacag
      241 gatgagccat gtgacttacg agttgcaccc tgataaatgg caggtcaagg agggttgtgt
      301 ttaatagtat attcctcaat gaaatgtcac tttttcctca atgtgtcctc tgtgtgagct
      361 aattaaaatc atgctttact gcaatgtcag cacatgaagt tgctgacttt cttgttgtct
      421 tctacatagt gcaaaatgaa tgttgtcatt tgataaattc aggatcttaa aggttctgtc
      481 tgacgggatc taatgtatgc tgctctctat atgtttaccg ctttcaaacc gcccctcttc
      541 ttttgttcca atcacggcat tcatgacctg cacataatgt tctctcctac catctgcaag
      601 actcacactc gtcaaaatca ccaggatttt ttaaacgagt tcacacaaat gttggtattg
      661 ctttccttcc agcccttcaa cagcgtgtcc caaagccacg ct
//
LOCUS       KCLA01002647             928 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43073upu ultra-conserved element locus uce-42,
            sequence.
ACCESSION   KCLA01002647
VERSION     KCLA01002647.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 928)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..928
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43073upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>928
                     /note="ultra-conserved element locus uce-42"
BASE COUNT          302 a          159 c          152 g          315 t
ORIGIN      
        1 tatccaagat aaaacatgct taatgctatt acatgctatc taggctgatt acaggactga
       61 tagatttctc atagaatttg tgtgattgtt gaatgtggct ataggtctct gctctttgat
      121 ccttaaagaa ttaggtctgt gtggggacaa aaaaggaaga actaaaacct aaaactgttt
      181 cactcacttt ggctaaaaca tagctacgaa gagggacaca tttatacttc aaataaaaag
      241 tacaccttct aaaaaatcat tattaccaga catttctcta aatgtttata aacattttgc
      301 aaccccatta actacagaat tatgctgaac aactgagtgt tgtagtaata ttttagtctt
      361 tgcatatttt cactgactca ctgaaaacaa aaggagtttc tgtaactgta tgaatgaacc
      421 atggcatgtg cgtgttcttt taagaaaggc caagggtgca gttctatttt cttagctctg
      481 ctttcatatt tatgtgtctc atttccagct cattgctgat gccttagttg cactatccat
      541 caacactttt atcctccttg ttcctcaaaa agaacataaa atcctttttt atgtggtggt
      601 aatattattg caaataaaag caaataccaa aatctttatt agtctgccaa aataataaac
      661 tatttaataa aagcatgctg taaaaataag gtcatttgca tcactcaagt ttcttgcaga
      721 aaatacagag aattattggt caaaaagtac agactgacag caattatttc tgttgttgat
      781 ctaatgcttc ctgaaaatgg gttaaaaaat gcactgaggt tttgcaagtc tgctgtcttt
      841 aaatgtttgc ttttaatgta cttctacaca gaggagcctg ggagaatcaa atttttcaga
      901 gctttacgtt ttagcagtat tctccata
//
LOCUS       KCLA01002648             813 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43089upu ultra-conserved element locus uce-4554,
            sequence.
ACCESSION   KCLA01002648
VERSION     KCLA01002648.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 813)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..813
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43089upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>813
                     /note="ultra-conserved element locus uce-4554"
BASE COUNT          249 a          151 c          156 g          257 t
ORIGIN      
        1 ggtgaatgac atatttttta cacacctcaa ctgtcaacat ttctaatcaa atcatccagc
       61 cttcttgctt cttaaatgat acaagcaata tttcctgtaa taaacacccc taagtctaat
      121 gagaggccct aaggcaactt caaatgtatg aattcattat aattgaacaa cataatctgg
      181 agggcaaaga tgcctgctac ccagtctttt aacttcgcac ggcttgggtg ttctatgaaa
      241 aatgttgtac attttgttta caatgtagtg ccgctcgttg aagtattgta tgttcctgta
      301 gtacataaga tggggacgca taatggagga aaaatcaagg aggcaatctt tcattttgtt
      361 cctgtatgaa aaattcaaaa gactgaaaaa ctcacccaga gaaattttgc gagcgtatta
      421 ttttccgatg tttcgatcaa tttgtctgtc aaccatgctg agaggtggaa ggggccagca
      481 aaagcaattt agcttgtgag gtccaaaata gaaatgtttt aggaaacctt gtcacacgtt
      541 attttttcac attagaaccg ctgtgggttt tatttgctag tcatattatg aagagaaatt
      601 ggtatcaatc atctaaatca cctatgaata tctgatataa ctattacttt tgtgcatata
      661 aataagggga gggggaagat ttaaatgaag cttttaaagc ctagcgaaac ctttgagtag
      721 acaacaacct ccctgcttgg gttttcctgt ttaaaataca tcccgtgcct ttgaattgct
      781 tgcaccccag tgccatcgta ctgagtcatc ttg
//
LOCUS       KCLA01002649             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43103upu ultra-conserved element locus uce-4420,
            sequence.
ACCESSION   KCLA01002649
VERSION     KCLA01002649.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43103upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-4420"
BASE COUNT          254 a          170 c          142 g          197 t
ORIGIN      
        1 aagataattt aaaaggtttt ttatgtggag atcagtcaca atgaatgtta gctaaaaaca
       61 aaagcgaaaa gtatcattca cagttatgac accctctgcc atctgaccac agatctgtat
      121 cattaattgt gtgacagaga aaataaacat gctctgtctc cgttcctccg tgtacacaca
      181 ccctaaaatc agaaatcaga gcgacatgaa caacaaagag gcagaagtcg actacaaacc
      241 tcgactgctc actgatctag agtccaaatt ccagttttat agaaaattct ccccttttaa
      301 ctgaagtgac gcagtcccta ttcatttgta ttccccttca agtaacatga aatagctttc
      361 agagtctaca ggaaagcagt gtttcactta tgtattttaa tgagcaccaa tgtcagtaat
      421 aatcaaaatg atgtttcact tagaggaata gtttattccc aggtacttgt gcagtgtact
      481 aacataacta gaacaagagt gacaagagcc acgaaaagga gctgcactga ctagcaattt
      541 ctgtgaagcc ctcaacccaa atatagctct gctctcacgg tgtaaatgct gcacataatg
      601 cagtcgctgt gaaggactta cacaaagaag ggtttagcca ctctgaagac taacttccct
      661 acttcagtac aggaaaagaa aggaaatctg tgcatcctta agcacaccaa gtgcctgtgg
      721 gttagcagcc actccagcag gtttcctcag gctaacagct gca
//
LOCUS       KCLA01002650             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43119upu ultra-conserved element locus uce-517,
            sequence.
ACCESSION   KCLA01002650
VERSION     KCLA01002650.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43119upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-517"
BASE COUNT          272 a          154 c          207 g          158 t
ORIGIN      
        1 tgaagataga taggaaaaag gctggaagaa attttaggaa tacagagctc taagagacga
       61 ggaagagaat taaagaagga agaaggcttc tgaagtgcag gaaaagttaa gaggatcaac
      121 tggataggga ggaaacacct acgggagagg tgggaagaaa gaataaaagt gagagaaaga
      181 aagagaatgg gagagattaa gaagcgctaa taaacctggg agagagaaca gttggaccgg
      241 atgacaagaa ggaaagcagg agtggaaaac tatgagagag tgaagaaggg tcagagggag
      301 ggatgtgggg agagaaggaa ggagacagaa ggaggagaca agaactgaag tctcactgcc
      361 tagtcaaggt aaagcactga gtgagagaga gctcactctg agggttaggt tagatttcca
      421 gagctcttag agctcatcga ccagcccgct ggagtcacta ttcaacccga gtcccaaaca
      481 caagcctcac taactacttt acagccactt tcattgattt tctttatcaa ataaacataa
      541 tacccgttac agcaacactt cctcttcgcg cagccagaat gccacaagct ctgactgctg
      601 cggttctcca gctcgcagtc ccccaccctc cactctttaa taaattgtat tctcgcactt
      661 agatggtcaa agacattatc cctcgcagaa tttttttgta atctcaaagg tacactgcga
      721 gctaggcaaa tcgtttaaat taagagggaa cgggtcccca tcgtcctggc gtgaagacac
      781 aatttccacc c
//
LOCUS       KCLA01002651             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43134upu ultra-conserved element locus uce-3555,
            sequence.
ACCESSION   KCLA01002651
VERSION     KCLA01002651.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43134upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-3555"
BASE COUNT          235 a          198 c          201 g          202 t
ORIGIN      
        1 tcagcagcgt ggccgttttc actgatgaga gtggtggtat ttcctttctc acagttgttc
       61 tgacagctgc ctttggtaca agttacttta cagatgctgg gtgtaaagac gaccttgata
      121 cggccagtgt gatttcccac tgacagcgga ggcagagaaa aaaagaaaaa taaacagatc
      181 actctggtat ccattgaatc gcttcaacaa ggcttggagg aataaaaaag gaggacggga
      241 gaaaacaggc gataggtcta caggaggagg gcagtctgca gcgttctctc tcatggatct
      301 ccagtggtgt ctctgaaaca ggagtaggaa gcttagcaaa cagaactctg ggatccactc
      361 caaaaccaca tttaaagtca agtcactgga gtgggattag taatcacaat gctgcacttt
      421 attcacaggc agacaaagag caacagcgag ggtatgacag cttaaatagc cagccctgac
      481 aggcagatgt aacgtaaaga ggctggccac gcatcgaggg gagaataaac tcgtgtcctc
      541 cctcatactt cccccgttcc tgcacttatt aagtcactat ttgcagcctg acccctggaa
      601 ctgtttgagg catgcagcat gtctgaaaac atctgtctca aatctgctgg caccccagcc
      661 cacagtggtc aaaccctgtg acacagctcc ctggacccat tttttcacag tgttttggca
      721 ctacttttcc acaaggaatt ccatattaca gacggatccg tgctgtcagc ctttgtttga
      781 gtaacacaca gctcagagaa cagggtattg atgctcagaa atggtcttct gagctc
//
LOCUS       KCLA01002652             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43150upu ultra-conserved element locus uce-1850,
            sequence.
ACCESSION   KCLA01002652
VERSION     KCLA01002652.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43150upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-1850"
BASE COUNT          257 a          150 c          175 g          218 t
ORIGIN      
        1 aagaaccagc ttccactggg tcattttcct gagcaacgta gagagagaaa tacaaatcct
       61 ggggtacaca ccagaaaaaa tcagatgatc cccacctgta gataaagatt tggccaatta
      121 ttatgtgtga cccagtctgg gaggttgttt taactctgct atgtcagagc atctagagtt
      181 ggcattcaat gtaaaggaaa cctctgcaga aaggaaagat tttatagaag atgaataatc
      241 cttttaactc ccacccagtt gccttgcaag tggtgaatga gaggtctgat taaacatgat
      301 gcaaaaagag cttgcaagga gcactgttta ctaacatttc aatttctatg cctcatttat
      361 tagacttaga ataaaaaggt tagaggggtg tttgggattg tctttaacct tgatgatatt
      421 tccactgaag cagcataatg gctcttaatt gcttaagtga agagaacatg ttgacatgtc
      481 cttctttgtg cttaaagctc tgtgcctaaa ccattatgct aattcaagca ttatatacac
      541 caaagtattt atgggactga cacaagtgat gttgcaggta aagggctgtg aaatggtctg
      601 taaacagaga gaattgattc caggcccaaa gcgatgctgt taaagtcaca gacattgaac
      661 agccagccct acaatttcta tccagattgt caaactgggt caggcagtgt cagcagggct
      721 gccattatag atcagatggg tggctttaat aatatgtaaa ccaaccacat aaacgcaaat
      781 taacgccgag gcaacgggac
//
LOCUS       KCLA01002653             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43165upu ultra-conserved element locus uce-2731,
            sequence.
ACCESSION   KCLA01002653
VERSION     KCLA01002653.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-2731"
BASE COUNT          177 a           60 c           92 g          150 t
ORIGIN      
        1 ttcagcacaa atacttcata tcttttcagc ataattattt agcagatatt ttgggttaat
       61 tattgtcatt aacaatatga gtcctatgag ggaatatcaa ttaaaatatg cacagctgaa
      121 ctttcaaatg agtaaataat ttagtttttg aagatgactg gaaacagcag ggtaacagtc
      181 aaaaggggaa caattatttt aatgcctatt tgacaaatga gtaattttta cagcaaatta
      241 gtttcttacc atagcacccc tactggtaac gagagagaaa ccattagcat gagttttaaa
      301 aataaaagct gctaagttat gcatgcaaag ttaaggaaat tgtttgtatg aagaaaaggt
      361 gattatgata cacattgtta gctgaagaat gttgccatgg gaatctaatt agggatataa
      421 atcacacaaa attatgtttg tatatagggc tgggtacatt aaagcaagag gcatgtgta
//
LOCUS       KCLA01002654             922 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43181upu ultra-conserved element locus uce-1743,
            sequence.
ACCESSION   KCLA01002654
VERSION     KCLA01002654.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 922)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..922
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43181upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>922
                     /note="ultra-conserved element locus uce-1743"
BASE COUNT          241 a          235 c          212 g          234 t
ORIGIN      
        1 ggctggctcg agttgtgggt tatcagcagc cttggcacct cgaaaatagt caactcaccg
       61 atttccacca tttaaccgtt tagcaccatt tcatcacctt tgccccatcg gcgcaacccc
      121 cgcggcgctc cgggcaggtg gagagccgcg acagcgaggg gagtcactct agggagcaaa
      181 atcattgcag aggagccgct ggaccgctga ggcgaccctt cccaagtcgg aacactcgag
      241 gaagtccttc aagcggcaaa cgttgccccc tgttgactcc ttccctaaag aatgcgtgga
      301 gcagagagag gtggagagga agagcggcta agctgtggtg accaaaggtg ctctggagct
      361 gttgttttgt attccttcct cttcaaagag caatataaac agaattattt atgcccggca
      421 aaatgttgct taattactta tgcaccactg tttgcttgta ttttaagctc tctctaccac
      481 ccacaggcag acgttaaaca gctgctaaaa gggagcttta gtcttggctg tttgaaatta
      541 gcatactcga gctttgaaaa aactttgctg ccgatttaca tatgcataga gactgatatt
      601 tagactcgcc atatgatatg tccctcaaga gcttttctta ttgcctccat cctcgggtct
      661 caacctagag actgtaaatc tagcaggtga ttaattccat ccccttgaga aactagcaat
      721 tagcacttgc aaccagtaag aaattgtcat ttccaagccc tgtttaccgt gcccgtgcgt
      781 gtgccgtgaa ctcaccgtta actccgcgcc gagagacgcg gcaatagatt tgcagccgcg
      841 cctgtctctt tatgtaaaaa tataacggag ctcccagcta atcaacctat taaacagacc
      901 gagagagatt aaataattgg ca
//
LOCUS       KCLA01002655             897 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43196upu ultra-conserved element locus uce-7423,
            sequence.
ACCESSION   KCLA01002655
VERSION     KCLA01002655.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43196upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>897
                     /note="ultra-conserved element locus uce-7423"
BASE COUNT          306 a          160 c          177 g          254 t
ORIGIN      
        1 gaccagatct gttgaagcaa aatgaagcat cacattcctt tgtggaaaag aaacctgttc
       61 ttggtgcaag acctgtgcac taattgtgaa tcattttgag aagctgctcg ttgacagctt
      121 catgctggga agtctaaatg actgtgtccc actttgctca gagggagaga gtaatttgtg
      181 taagtctttc tacagcttga atctcagtct ccacacaata agatgtgcta tgtaaggcag
      241 cagcatttaa gagcctaatg aatgtacata cacaagtatg aagacacact tgtaagctgg
      301 tgctggtaag gaagagtaca ttattcaatg tagccacttt gaaaaaatct ataaaattca
      361 catacagtat gctcattgta aaatgacatg tgctgcattt aatactcacc gacgtgacac
      421 ttaacaaaca gtcttgaact gagctctatt tgcattttat ttctgtcaca gcttgacaaa
      481 aaagtctgtt gctttcatct gctttttctt tttaacattt ctaagcaaag atgcataggt
      541 gtaccttgca ggcagaataa aaagtgaagt gccctctaaa ggggtgtcaa aaccttttcc
      601 ttatatgttt ataatgtacc ccaatgttca atcacttccc cagcccagaa gagaaaacaa
      661 aggactattt caagagcaac tgaatatttg tgaattttga tacaaaatat atggatgaaa
      721 gggcagaaaa aacagaaatg tcccaaaatt gaatgagaga acaatcttct agaggaatcc
      781 tttgcacaca tgagattgag ggcaagaaag aatcatacaa gaatagaaga aattctagaa
      841 atggtgccag atgtgtcaag agatttgaag taatctgaac tcatactgtg gcaaatc
//
LOCUS       KCLA01002656             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43212upu ultra-conserved element locus uce-7296,
            sequence.
ACCESSION   KCLA01002656
VERSION     KCLA01002656.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43212upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-7296"
BASE COUNT          253 a          165 c          139 g          230 t
ORIGIN      
        1 tgttgacatt ctgcatgtgt aagaaaaact tatgtatgta gatttctctc acaagagctt
       61 cagggcataa cccagacaga gaagccatca cttttccatt ctgcaccgag gatgctgaca
      121 aaagaattgt gcaaatgagc ctttaaatcc ttaaatagtc actacacaat gcatgaaaga
      181 atgcagccca ggacaaaggg caatattcac agtttatctc agggtgatgg atctgaatcg
      241 acgcatgaac atgggtttgt tacgggatgg agtagtccgc aaacccctac tgagagccca
      301 gtggccacag tctgtaatgc aaacagtcag gctaagtcct taacaattag agtaaattga
      361 actggccatt atctgaactt caacttgttc tcatgattga tatgggaaat gaaaagttgt
      421 atatatctcc acaaagacca catgttttct tctcctgaca aattctagga attggtagat
      481 tcataattca atgcagaaat tcctattctg catttcctct taataaaggt gcttacattc
      541 acattgaaat gaacattctc cattctattg ttttcctgca atttcatcca gatacaagac
      601 atgacaacaa gctcacagaa ctcaatctgt acatagtaaa aacagacaac ctgtagaact
      661 taatatcata tatggatata tacttcttca tccaccatac tccactccag cagtctgtta
      721 ttagtctgta taactattct ggtagctacg gagtcatatg ttttggggca ttcaatactt
      781 ccggaaa
//
LOCUS       KCLA01002657             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43227upu ultra-conserved element locus uce-7941,
            sequence.
ACCESSION   KCLA01002657
VERSION     KCLA01002657.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43227upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-7941"
BASE COUNT          296 a          175 c          178 g          296 t
ORIGIN      
        1 acagagcttt tcaggtagat accagcttta tgtttaaaaa tacacatctc aaatatcttg
       61 agtatttgaa tacttgaagt ctcaaatttc caagcagaat aaaagcatcg tttgcgtttt
      121 tatttaagcc aactcattct tgcattttct tgagacactg tgttcagatt tgggttcgaa
      181 agccctaaag tttatttgtg agagctttta gctgaatttt atggatgata tggtattctt
      241 cacgatgaag ttttaaaaga cacaaaagaa aaaaccttgc tcaaatgtag aagttatttt
      301 tgcagtaacg tatgtcatga tttttaaaca ttcaggcctt taaacttttt ttttatagtg
      361 tatgttcttg ccaatcccag cacagttcta caaagtaaaa tatttggcag tgaattcata
      421 ttaacagatg gaacaagaaa ttaacacgtt tttgcttcgc taattcacag ttcttttaat
      481 acgctaattc taaatcacct gttctgactt tgacaggcta cagacacctg tttggggtaa
      541 tattccacag ctaattatta catgagaaac tcagtttcca acaaaagggt ttctgtgtga
      601 aattgtcata gttaacaaat tagtaatacc aactttatac gaaaatagct tgcagtttta
      661 atttacatgt acttaacctt gcccaaagaa ccagaagcag tgggattgcg tggggggcca
      721 agttctcccc ccagcacacc ggtgagctga tgcttctatc cattagccac cggagtccta
      781 caattcccaa tgcaagtcct gctccttgta gctgagtcaa tgatagcaca gggctgccca
      841 ctaaaatcaa gagaagaggg ctagaagttt cttctaagga gaaagcttgg agctaattcc
      901 agcaaactgg ggctggtgca gtttagagtc agagtaaagg aaaaa
//
LOCUS       KCLA01002658            1199 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43241upu ultra-conserved element locus uce-1747,
            sequence.
ACCESSION   KCLA01002658
VERSION     KCLA01002658.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1199)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1199)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1199
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43241upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1199
                     /note="ultra-conserved element locus uce-1747"
BASE COUNT          388 a          241 c          230 g          340 t
ORIGIN      
        1 tttttcccag gggaagtaca cagggaggct aatgggcaat cacataacta ggcaactgaa
       61 atgtattaag caaaacattt gcccgaacct ggaggtaatt tttgcatgtt tgctgtgcac
      121 tatagtcaca aacaagaagg aacaactcaa gttagagcag ccagagttct agctaaagaa
      181 ccataaaact ggaaagaaca caccaagtta tttttccatg tactgatcat tcctttcaaa
      241 aaggaattaa aaagacaagg attaaaaact tccaatgtca agaagttaag ttacatgtta
      301 gattgggcta cattttctca agagtttaat ctgtactgct agtcacataa aaatccagat
      361 gccagctcca gtattttctt gcagtgttgt ttttgattga aaactttgtg aatgtttgtg
      421 atattgctga gagcctattg gctgatgagc atctcttgct atagtctcca tcattatttg
      481 cctgtcttgt ctattaacga gcactatcat cccatcgtaa gatgacagct gcaacacgta
      541 ctcaggcgca ataaacagct aaatgaggcg cacagcaatt tcacttgtca ccagagccct
      601 cggcacgact ggctgcacag cttgatgcat aaattcatga ggctgttgca tatgatggag
      661 tatgcctggc tgaaagaggt gatggatagc agggcagcta aaaatggcca tcaccttgac
      721 tctgtcagga cattttttaa aagtacccca tcagctctct tgcattcttt catgtacact
      781 atccccaagc tacaggcttt tgagagcact gatacaagat tttcccttac tgaagttttt
      841 cagatctgaa gtcaagtttc ctcttaggtt cagtgaacac agtatatgct gctaatgtgt
      901 agggtgaaat ggtcctataa aaattgttca ttcaacacac agaagagcca tgaggttaaa
      961 cactaacaac agaaattttc aattttccag agtgtgtcta aaatgttgtt aaaatacata
     1021 aatcacagag gcacacagag aagcagaccc tctgaagtct catgctaagt acattaaatg
     1081 acatatatgc atagcaaaaa actctagaag gtgttcttga gcacattatg gtaattatag
     1141 attatgcaag cccagtacga gtcaaaataa cttgctatta cctaccatca cattaccaa
//
LOCUS       KCLA01002659             936 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43257upu ultra-conserved element locus uce-1892,
            sequence.
ACCESSION   KCLA01002659
VERSION     KCLA01002659.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 936)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 936)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..936
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43257upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>936
                     /note="ultra-conserved element locus uce-1892"
BASE COUNT          290 a          151 c          180 g          315 t
ORIGIN      
        1 tttcatgtat gaaacgactg gacagccagc tgcacataca taacacccat atagagagac
       61 tttagccaga agttccaaag tattatgagc tttcttgata ttttcgatat tttaaaaaat
      121 ctttctcacc attttaaatg ttcaattaaa caagaatcta cattttacat gtaaatttgt
      181 ttttaaaaaa catttttatg tacttataga aagaaagaat ttatatgttg tatgatttac
      241 agtcttggaa aaaataacgt agtcataact ttgcagtttt tgtgatgcat gaagatcaga
      301 ttttttaatg ttggttaatg ctttactaat taaagtgtgc atgttaatta aagcagaggc
      361 taatgttaat tacctatatt aatggaatct catgtagcac ctgcctgaag caatgggttc
      421 aattttcaaa atatctcaat taaggctgaa acttttgatt tgcatctagt agggtttcaa
      481 ttaactgcat tgcaaactta aataacacac ttaaagggat aatatcacca atcacatgca
      541 gcacagtgga attggtcggt tcaattattg actacggctg tgagagcttt cacagttggt
      601 aggtaagtac tatggtattg gcaagcgatt attgtctagg gctgtcatca cttctgtggc
      661 tgttgtaaga gagatgttaa attgctgttc ttgggcctca ctgcaattcc attgttgagg
      721 gagacgaaaa tagaaaggtg tttgctcatg tccactgttt aatggtgaag gcttggcttg
      781 ttcctctgaa ataaatgacc accgttccat gacatggtaa ggcattttat caaatgggaa
      841 agcagcattt gtgataaagt gtgcaatgtt gccgtgtgct tctcagccaa accaagagat
      901 gtgattgtat tcccaatctc tcttttagcc accaca
//
LOCUS       KCLA01002660             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43271upu ultra-conserved element locus uce-5774,
            sequence.
ACCESSION   KCLA01002660
VERSION     KCLA01002660.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43271upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-5774"
BASE COUNT          186 a          154 c          176 g          218 t
ORIGIN      
        1 ggctgatggc tgatggcagg tcctgggctg ggctgcatga gctcagaggt cttttccagc
       61 ctccatactt ctgtgactgt gtaatattta gctcctctct caggcagtga tgcatttcag
      121 tgcagtgtcc ccaagctgag ttatctgaac tacttcacat tattataggt gttgggaata
      181 acacttaaaa gccttgaact ctgtctcttg tggtgccagt gacccacaag taaaagagtg
      241 ttttcaacgt gtgtggaaaa ttgtctgatt gcttcgtgca tctctttgct ttttaatttt
      301 cttccaggtt tacaaggcca gaacatctag gaagcagtgc caaaatcaaa tgtagtggtt
      361 gccatagcta ccaggaatct accaaacaac tcactatgaa gaagttaccc attgtggcct
      421 gttttcatct caaagtaagt tcacatagag caggcagagc agaggatgtg tattccgctc
      481 ggagaggatg agctgaattc ctgcacgtgt cttctgcctc tcacctaccc tacactttta
      541 ctgaaagaat ctcacggagg agctctgtgg aaagaaaagc atgaaaaggt tactggttat
      601 aatggaggtt tctgatatct tcccagatgg ggggtgtttt tcagtagctc cggtccagat
      661 tgttaaatgc agtgacggga gacagtgtca taactgctgc cctcagatag ttttgtctta
      721 aagagcatga ctgt
//
LOCUS       KCLA01002661             637 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43286upu ultra-conserved element locus uce-2595,
            sequence.
ACCESSION   KCLA01002661
VERSION     KCLA01002661.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 637)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..637
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43286upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>637
                     /note="ultra-conserved element locus uce-2595"
BASE COUNT          185 a          135 c          164 g          153 t
ORIGIN      
        1 tgcattagag aggcttttat cctgctttgg gtcccacgag ctgcctatgc tgggaaggtt
       61 taaaaccatg tggaagtgca tggtgcgaga cgagtgctgt gtgcaagcat tgcctttctt
      121 ctctctggaa aagtgtagca tcagagctat tcagtttggt tagcgacaag catctcacca
      181 ggcccttccc attccgtgag gacggttggt taacaaggag aaagcagccc aacaaattct
      241 gcattcacat aaatcgacag gggattgtaa cagatggggt ctgtttaggt ttggcttatt
      301 ttaacagtgc ggcgaagggt tcccaactaa actgcattag atgatccatc agcaagaagc
      361 ttcagtcgaa aggactgaaa gggaaaaaat ctcgcattca tttacagcta cagccatccc
      421 cgttaaaacc tctctcgcct gacagcagca agtggcaaac tgagggaagc agtgggtcat
      481 gggaaaggtc ccattagatc agtgggagca cacactaaac aaatacagcc acatggatgc
      541 acacatttaa atactgccca agggaatatg tggacatatg ttcagtgtgg ctgagagagg
      601 caggctctag gcttcgagaa agctatgttt aagaaaa
//
LOCUS       KCLA01002662             798 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43302upu ultra-conserved element locus uce-5290,
            sequence.
ACCESSION   KCLA01002662
VERSION     KCLA01002662.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 798)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..798
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43302upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>798
                     /note="ultra-conserved element locus uce-5290"
BASE COUNT          272 a          158 c          143 g          225 t
ORIGIN      
        1 aaagtataaa caaaccacaa gacatgataa tcaaggttag agccatgtgt acaaaacaaa
       61 tggagccttc ctcacctttg gcttgaaaaa acaaaaagaa agggatttca gcaatattgt
      121 ctttaatcca atttactttg gatttaatct ccaaaacaag actggcctgc taattcccaa
      181 ttataatggc acatgtaatc agagtcctca ttaacaaaga ctgactatat tgtctattag
      241 gaatggaaat ctgaaatgca aattcagcaa atcaaaacgt taaatgagct ctacccaaga
      301 tgcttagagc tcctgccagg gcagcgcatg ctggccgaca cctgccctga attctccctc
      361 cagctgaatg tttcattctg ttccagtctt tgcctcctaa ttgacctgct tatgatctct
      421 gctacaatta acatatgctt attagtaatg gctggttaaa gatttcaaac tgccgcagtt
      481 tacaaagtct aatagagatg gcacaccaca ggaaagatga gaccactgtt tccctcatca
      541 gcaatgtctt agtggtttgg tttcatgtga ttcaaatgag ataatttttc acatcatctg
      601 atgtctgcaa atccattcta attgaaactg gaaatctgca cacaaagtgg cttaaggctc
      661 ctggtgcact aaatgaaaat cagttagtga atattatttt tctccccttt aaccacatgc
      721 ttaacagaca tgagaaaaag atttttttaa aagaagaagg gggaaaggaa agaaagaata
      781 gaggaaaaaa gctgattt
//
LOCUS       KCLA01002663             231 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43317upu ultra-conserved element locus uce-6628,
            sequence.
ACCESSION   KCLA01002663
VERSION     KCLA01002663.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 231)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 231)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..231
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43317upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>231
                     /note="ultra-conserved element locus uce-6628"
BASE COUNT           92 a           37 c           29 g           73 t
ORIGIN      
        1 caaatctagt tgtctaaaag acaattcact gtacacattt tatttacagt tttttacact
       61 gtcttatatg aatgggaccg cttttctact tgagccattt caaccaaagc aaaataacct
      121 aaggaataca aagtgttaaa atacagcata agatacaaaa acagacatac tatttctagt
      181 aaggaatgta aattatggtg ttacattaaa aaaaatccac aattatgttt a
//
LOCUS       KCLA01002664             932 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43333upu ultra-conserved element locus uce-3680,
            sequence.
ACCESSION   KCLA01002664
VERSION     KCLA01002664.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 932)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..932
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43333upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>932
                     /note="ultra-conserved element locus uce-3680"
BASE COUNT          244 a          221 c          183 g          284 t
ORIGIN      
        1 tcccacagca cctgtttgat catcaccagt ttccaaatct acttctctac taaagttctg
       61 gtttccattt atcctctttc atgtgtactg gttgagatta ttctaagcca attctcattt
      121 tcttagttca tccctattcc taacttttct ggctcatatt gtgcttgtct acagcagtgg
      181 aagaagctat tcctgtttct tcattctctg cctgcaatta cttgtttgta ctctccatcc
      241 ctgcaaatgt gctcacaagt gatctacagc caggcagctg tggtttgtct ctgtaggagc
      301 cagagagaat ctccttgacc tgaaaagcag cagctacctc atgctcagct tggccaagtg
      361 tgccagccag ctttgcatgt cctaagtact gtctgatgct tcctcttata atcagactga
      421 gcatcactgc ttctcccaat cgccccctgc actgaattga ccaatagagc tagacatatg
      481 gagaatcaaa tcagaaaccc aaatcagcag ttgtcagagg agattaattc aaacaggaag
      541 ctacaaaact cttgggttgg gtttttttgt gggttttttt ttctcaagct ccagtagaaa
      601 aaaacataga tatgcccagc tgtatgctca ggcagatggc agtgactcca gtgtgctttc
      661 tctgcccagc tacacatgtg atttctgtag catttaagca acgctaggaa attactgaga
      721 aagggaaaga aagaagaagc tgtattcaca ctgcttagtt caaagcatct aaactagatt
      781 agctgctgct aaaaggacac gctgtcttaa ttcattgcac aggcaatgca gagagacagg
      841 gactctgaat cgttctctgg ggatgcttct caatcctgac ttgaaagagg tgaacatcct
      901 aactcaggtg catgtatctt tcctctttca gc
//
LOCUS       KCLA01002665             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43349upu ultra-conserved element locus uce-4741,
            sequence.
ACCESSION   KCLA01002665
VERSION     KCLA01002665.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43349upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-4741"
BASE COUNT          155 a           81 c           79 g          171 t
ORIGIN      
        1 aataatttca aagtattctt agcatcagta aatccaagct cagagaatgt actggatagt
       61 gtatgaattg attaggaaaa caataaaagt atcttattct cacttcagat tggcagtgat
      121 tttaaaaact actgcaaaca aagtttgagt catgtgaaaa tagcactgac atttgcccat
      181 agttttcatc tggctaagtg gaagtgacac cagtagatta gaatgagact aagacaattc
      241 acattgcaat tgtgttagtt taactttaac aatcttttaa cactcctgtt taaatgtggc
      301 tgacatacta taattacaaa tctacaagcc ttgattatag aattttacat cacgaaccta
      361 tggggaaagt gtattgattt ttgtgaagca gctctttttt aaaaccactt ttctaatact
      421 gtggaatctt cccaacattg ttcttttgcc tgttgcactg atgtccatac tgttttttct
      481 ctttgt
//
LOCUS       KCLA01002666             553 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43380upu ultra-conserved element locus uce-1346,
            sequence.
ACCESSION   KCLA01002666
VERSION     KCLA01002666.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 553)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..553
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43380upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>553
                     /note="ultra-conserved element locus uce-1346"
BASE COUNT          147 a          118 c          124 g          164 t
ORIGIN      
        1 cccggcttgt ctggcaatca tgttagtgat tatatgggta atgaaacacg tgctcttttt
       61 gtctgtggct ctgattaatc tgctttctat ttagctgtga tttatggtgc tcaactgttg
      121 aggtgagcgc tggcccatca gttccatagc ctattacggg cgccgcgacg gtgaaatgcc
      181 tgcgaggctt gaactgtttc ttgacagcca ggcttcccgc tacattccct ccaatctgtt
      241 ttgcttcctg gtgtgacctt tcatacagta aaatacatta gttgaatagc acagtctcat
      301 taaaagagtg aattaaccga agagtctttt taactaaatg acagccaaag gactgagtgc
      361 taatagccac gggcagttag aaacttaact catgaatcag gctgttaata ctgctcggtg
      421 cctgaagcgc taagggcacc acactctctg cttgctctca taagaagaaa agctcattac
      481 tttcctcctg atgggagaga aagagtgagc gagcaataat aaagcttgaa tttttcaata
      541 ctgttaaaaa tgg
//
LOCUS       KCLA01002667            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43395upu ultra-conserved element locus uce-7949,
            sequence.
ACCESSION   KCLA01002667
VERSION     KCLA01002667.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43395upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-7949"
BASE COUNT          313 a          148 c          150 g          399 t
ORIGIN      
        1 actttttata atgaaaataa aatatatttt ccttcataag aaaaatatat ccccattttt
       61 ctttcctcta tactaagtgg tagggtattg tgtccttcaa gaagcacctt cgagattata
      121 catcttatca ttgtaaaatc agttttaaaa gaaaacctac aggtattttt cagtattaca
      181 gtcattgaca tttttataga tgccctaaag agatactgta ttaatatctt gatatgtttt
      241 ttatttattt tactaaaatg ttattactga ctttgtaagg gaacaccctt taggtgttta
      301 ggattatgtt tcatattctg cgtagtacag aaaattgcca agcttttata aaaaaaaatt
      361 attgtttctt agtgtgattt atttgccttg tctttagact attgcatggt aaagtttatt
      421 ttgtgcatat actttttatt ttactaatat attacaagcc atatctcaat gacccctgta
      481 catttttcat gctgtcttac tcccaatggc ctctgtgcat gtaagtaacc tgttaagtga
      541 caatgcctct ttatttgctt cttactgttt cctttcaaga actccttttc tttattagtt
      601 agtaacacag gagcattaaa gttcagtctt taaatgtacc ctgtattctc atatgatgtg
      661 cataataaga aaacaatcat ttttcctttg catttgataa ccctacaatc attagttaaa
      721 ttcatgctgc cagtttgtga tgaaggcatt agtatgtatc attcatgttg tttgttttgt
      781 tgtttgtatc taacataatg tgggtttgtt caagaagaaa ataatgatat ttttataagt
      841 ttatgagaga aggctcagat gattagaatg gtaaaactgc ctaacatgct gtagctattt
      901 aactccttct aatacaaaac aaattattaa ttaaactagt gtgacattgc aataaggaca
      961 gtagtgagaa ttccattttt gggatgaaag tgaaatatta ctaaattgtt
//
LOCUS       KCLA01002668             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43411upu ultra-conserved element locus uce-6249,
            sequence.
ACCESSION   KCLA01002668
VERSION     KCLA01002668.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43411upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-6249"
BASE COUNT          139 a          121 c          107 g          157 t
ORIGIN      
        1 ctctttcttt tccccccttc cctttcattc ataaacctgg tggctataga cgcagcttga
       61 atattgacgt ctcttccccc aactgctcct ccgttaaccc aattacagaa ttcatcaaga
      121 actgtgttga attatctctt tccatacagt atcagcatta gcctaattaa aagctataat
      181 gtctgatata atgattaaat cgttagctct gctgtaggga agcaatattt tgttttccct
      241 tcaattagaa gctgattgag gttttcagag caggtcagct gtgaaatttg aattatatgt
      301 gtgagtaccg ttcacagggt gagcccctac tcgaaagctc cagagattct ccaaacgcct
      361 ttacccagca agctgggaaa agacaacaaa acacaaagcg agcctgtagc tggtttggga
      421 ctggggctgt aggatgtccc ggaacggttg ttagtgctgg aaaataaaga ggggatttat
      481 tcgaatgcct ttttccctcc atcctgtccc tgctgaacag cagt
//
LOCUS       KCLA01002669            1001 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43427upu ultra-conserved element locus uce-5924,
            sequence.
ACCESSION   KCLA01002669
VERSION     KCLA01002669.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1001)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1001
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43427upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1001
                     /note="ultra-conserved element locus uce-5924"
BASE COUNT          302 a          248 c          183 g          268 t
ORIGIN      
        1 ttaagtgctg aacacacagg actcaactac aactacacac cctagtgatt gatcagtaat
       61 tccagtctgg aatgctagta aactccacac agcagttctc aacctagatg actgccccaa
      121 ctctgcttcc ttagcaacga taacagtttc acacactcct aacactgatc tctcagtgga
      181 tgttagtaat ggcactgtgc aagaagccat gctttcccag agcatcgcat tgtcttcttc
      241 agcatcataa aatgaagtaa agctgcagct tcgttataat tctgtggctc aacagggaag
      301 agaaaacaac gcttccaaca gtagcccact caaccttgag tgttttaact tcacctgccc
      361 taacgctctg cacgtattgt aacagaagtg tgccaatgca tttctgatct actgtctctt
      421 tggtaaatgt ttgggaatag cacttgtccc tgtagacctt acctcatatt atgatcatct
      481 actttattgt gtaacggatc ttttagttac ctccccgccc atccatgtac acggaagggc
      541 catgtacatg gcgaagctag agactgtaac ctgaagattg gggacaaatt aaagaaaaaa
      601 atgtgattca acaggattac ataaaggtaa gtcagggtca aacaagtaaa gccatttaat
      661 tcattggagt cacgtacatt atattatacc tgaccttccc acacctacag gattagcaac
      721 tacttcagca gagtatcact acatgttact gcatttaaca gttaacctgc tccgcctacc
      781 ccaactcact ggtggaacct tacatataat cagtaacatt acgtatacaa cgcctctcgt
      841 gtgtttagtg actaatagta agtgttggga aacctcacct tccgatgacc actgttcttt
      901 tggcacttct gcaaccagac agtggtagaa agggtgctca ccaaagccat cctcaagcag
      961 ctctagaaaa gcagaataaa tcggcacctg agctacagat c
//
LOCUS       KCLA01002670             472 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43442upu ultra-conserved element locus uce-4049,
            sequence.
ACCESSION   KCLA01002670
VERSION     KCLA01002670.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 472)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..472
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43442upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>472
                     /note="ultra-conserved element locus uce-4049"
BASE COUNT          139 a          104 c           97 g          132 t
ORIGIN      
        1 taacacccca aacagtcaca gactgctctc taccaccctc gacatttaat catcagtctc
       61 ttagccgata gacttctaag tgatttttct tccctactta agatatactc actaagtgga
      121 cctaacagta gtagtatatt ttacagcagc aactcctgct agaaaagtgc tcgaagttca
      181 gggggcattt gtcttctttc tcacaaattc atttaagtac cagtcttgat ggagctttaa
      241 ctggggcaga caaccataca aatgacttga gataaaatga aaataatgga ctgagctggg
      301 tgccgggggt ggtagttaca ctgcatgcac atcaataagc attgagtgtt attctatgct
      361 aatgtaagcc tgatggatca gctttccctt ttagcctaga ggaccattaa gcactagaag
      421 ctgggtcaaa ccgatactgt aaggcagacg taccttaacg gctggcagta gt
//
LOCUS       KCLA01002671            1178 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43458upu ultra-conserved element locus uce-2114,
            sequence.
ACCESSION   KCLA01002671
VERSION     KCLA01002671.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1178)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1178)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1178
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43458upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1178
                     /note="ultra-conserved element locus uce-2114"
BASE COUNT          356 a          230 c          211 g          381 t
ORIGIN      
        1 tttcagttct gtttatattt tgattagacc taataaataa ctgattttcc tttggttgtt
       61 tgcaacaaca catcacccag agagcttcag cgtttatttc cttctcctag agcacgccaa
      121 agaacgtctg ggtttctgaa ttagcattta gaactaaggt gggttatcta acaagcattc
      181 agattcaata gtacttttga cagcagtaaa taaagagcct tttaacatct tgaacacacg
      241 tgcttgaaaa aagtagttgc atcaaagcag ttcaaagact gaagagaaaa accagttaaa
      301 atccagtttg ctgcgagaca attttagtgt ggtgtaaaca acctttcacg actccccatg
      361 ggaaatgttg taagactacg ttcgaaatga atcaggcata tttataaaga tcacaaagtg
      421 gtcaaatgaa tttgcatttc tggcagattc actccacaag tactacttgc tacagcctgt
      481 ggaaatctca aatctcacat cagcgctgcc tatagtgctt tattatttat tacatgttat
      541 gctaagtacc tgtgaaaggg gacattcctt ggccaatgaa ctctggttca tatccttcag
      601 taagtccttc agagcatttc ttactgttgt gtgagaccat tgttcaggag gcaagtcttc
      661 tagtttaggg caactatttg aaacacagat tagaaagggg attattacaa gattgcatcc
      721 tgctgcagaa cattccttta agacagacag atttcatttc gcgcatcaag cagatgcatc
      781 tggagattgc tctcggtctc ctgattgttc cgattagtta attactttat acaacacatc
      841 tgctgtattg atgcatgaat tatacatcag ctgcatgtgg cgactatttt ttcatgttac
      901 ttctaccttc ctgctctgat gcgcttggta aaacaattta aggtgtaatg ctttctcaca
      961 accgatcatg aaaagcatta atacattaac catttcttcg gttttggttc ccgtgaaatt
     1021 taagaaccta gacagcaacc ataagtgtga gcaagtcatt cttgtaccaa ccgcacacag
     1081 atggtattgt tcatgatatg caaaaatatt tttctcttaa gtaaacttta tgtaaaatgc
     1141 cttcttgtaa tgcatcattt aattgactaa aatgcaat
//
LOCUS       KCLA01002672             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43473upu ultra-conserved element locus uce-6191,
            sequence.
ACCESSION   KCLA01002672
VERSION     KCLA01002672.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43473upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-6191"
BASE COUNT          181 a          116 c          111 g          169 t
ORIGIN      
        1 ttcatttatg caatatctgg cttcagataa tgaaaggcac ctgcaagaaa gcaaaagaag
       61 ctttttaagt cgtgctgtga caacctcgca gcatggggcc atgccaacta caggttgaca
      121 tcgtcatatt taatactgag atatcaaagg aaaagaacta atatttttat tcctaggaca
      181 agtttgacaa aactctatgt atctgggatt atatactgta atgattcttg agctgacctc
      241 attaagaaca tctgtttcta atagtagaat gccagtggtt atttcatttt ggacaaccct
      301 tatgttttac ctaatggcaa tcaggtttca tgtctcaaca attaataaca tcaagatgtt
      361 gttgacatca cttaagaaaa taattatgca gcagaaatct cagttgaaaa atcagcagtc
      421 caagcagtgc actgtggagc agagaaggag tctgccacaa ggatctctgc tcatcatttt
      481 ctttgttcca tacagcacag agaacgttga ggaacagctc ccagtactca ctttgtccat
      541 actgtccata ctggtagccc gtgacagggt ccatgct
//
LOCUS       KCLA01002673            1046 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43489upu ultra-conserved element locus uce-2164,
            sequence.
ACCESSION   KCLA01002673
VERSION     KCLA01002673.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1046)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1046)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1046
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43489upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1046
                     /note="ultra-conserved element locus uce-2164"
BASE COUNT          282 a          237 c          238 g          289 t
ORIGIN      
        1 gtgtgggaaa gggctggttt cacgtcattt attctgggct cctttggttt cctttccctt
       61 tcttacgctt tgcaggaggg agcttcagca aacctgtata acccttttgc attatttatt
      121 gcacacttgt ttaccgcgta cactgtgctt cattagctaa ttttggctcc ggacctccca
      181 cgatgccctg gcgagggtaa ggtaataaga ctgtagtatt agtgtcagcc gtgggtcaga
      241 gatgtcacga tggtatatca ttaaaatgtg acactgccaa aaactgcccc agctcccctg
      301 tccttagaaa agaaaccccg agccgaggtt gcctgctact cctgtgagct cgcattcagc
      361 tgaattgttc attttgagag cgcagccagc cgcagatccg gacctccata gtgaaatgat
      421 gggctgcctg gcacaaaagg ggagttctgt aggagcagtg aataatggga aacccctttc
      481 atcggcagtg ctaacctttt ggcagccacc agcaaactct attctgatct gctgattggg
      541 gaggacaata cactgaagct cactttgaat gaatgctgcc accaacagtg tccccattca
      601 gcgggttttg ggaaccatct ttgaccattg tctgccatca ctccttcaga cattaggaaa
      661 agggaaagtg agcacgtcta tagggggaaa agtacttctt ttcttggctt taatctctct
      721 ttaaagcttc atagatctac atttccagct gagctactgg aactatgcag tgtcagataa
      781 atacagaaga gagcggtttc aagctgagct tttaaatccc cttatctgca tgaactaata
      841 atgcagattt agtgctgtta aaaacagaga ctgataagtc ttttccttta aagcctttaa
      901 actgctaaag agcatttaac agcgatgcag ttcaaaccca gggaacaatg ccgagaagga
      961 aaacagttta atgagctaaa ccttcactga atgaaacaga agcaccttct cacagttgat
     1021 ttaggtcact gtgggagtcg gtgaaa
//
LOCUS       KCLA01002674             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43505upu ultra-conserved element locus uce-4927,
            sequence.
ACCESSION   KCLA01002674
VERSION     KCLA01002674.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43505upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-4927"
BASE COUNT          276 a          182 c          169 g          245 t
ORIGIN      
        1 tgacatcctc tgagacgaag acctccctga agcactatcc tcactccgca tctacagtac
       61 gtagcatcag agctgcctcc tcagttgctg tcattgagta ccagtgaaga attcttggaa
      121 acagaatctt ctcagagatc agctattcta aggagagaaa cctctaaaaa cgtgctcaaa
      181 aatacttatt attccttgtg agacatactg agaacaaact agttcattaa agtcatatca
      241 gcacttgtaa ttggcccttg ttggccaata gaaggagaca tttgcaactt ttccctggaa
      301 attatattct aaatccttca tgaggtggac cttgtccttt tctgaggaaa cttgatagca
      361 gtctttagta ttcactggca taattaggac tgcagttaat ttcattaaat cctcttgctg
      421 ctaaatgaag cagattatga gacatctttt attgcaaggc atgaaattac agcctgtcag
      481 ctgccaatgg tagagtaaaa ctaatgaatt acagggtaaa taacaccaga attaaccagc
      541 caatttaaca gagcagagaa caaagtcatt tttacttaga gctctggcaa acaccactgc
      601 cgccaggata cctttcagct gaaagggaag caattcaagg agtctccaaa ctgaacaacc
      661 ggggaaaagc cacattcatt gtgcagccac ttaaagttgc tgatgctgcc agcaagtgat
      721 tagaaactgg tctgacaagc tattgcattg ctaaagtatt tcaatcatga tgtctccgag
      781 tagtttgtgc tgatctatta ttctttacac agcccaggaa aaagggcaga cactgattaa
      841 tttgttacta ttataactgg tttaatgggg ac
//
LOCUS       KCLA01002675             802 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43521upu ultra-conserved element locus uce-7979,
            sequence.
ACCESSION   KCLA01002675
VERSION     KCLA01002675.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 802)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..802
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43521upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>802
                     /note="ultra-conserved element locus uce-7979"
BASE COUNT          217 a          208 c          201 g          176 t
ORIGIN      
        1 tggggggggt tcgtgtagct gcaggtaccc acaagcatct cctcaacagc aaatccatct
       61 agaccaaggc tcacccagca ccccctaaac tgcatcctgc ccaagtaggg tcttcaagga
      121 ccccataaca agcaaaccac aacctcttct ggttttcatt tggccggggc cactcccgca
      181 tggagcatgt gctgggggtg cctcctgtct gcaaattatt gataagggag ggggtgcgga
      241 aaacgccagg gaaagtatca ggcggggtga cgcgacactg gttcaatcca gatccgctcc
      301 gacggcagcg agaggtttga ttgacatctt taacctctat ttctcactct cgttctgccc
      361 ttttcccgac ctaaggccaa caaagtaatt tggaagtcga acttcaccta agtgttaatg
      421 atgaagctct gggaagtttc gcccataatg aggcaccatg caggaggaag taccagttgg
      481 gattcctatt gcagccatat gtgaggccaa tgttgcatga attaacatac ggtgggtcaa
      541 gttaacatat gtacagtgag aaatgactaa tgacttatca cactgatgtt atttttggac
      601 cttcttcctc gtacacaacc tttgccgact cgaagcactt gatgccccga cttcccgggt
      661 tccccgggaa gagagaggaa agtgaaacca tatgtttagc gaaggagaaa agacgagcca
      721 gaaacgcaag gctggaaaaa aataggggca agcgccatcc tgccgcagcc aaagggaatg
      781 aatgcccagc aacgtccccc cc
//
LOCUS       KCLA01002676             326 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43536upu ultra-conserved element locus uce-4450,
            sequence.
ACCESSION   KCLA01002676
VERSION     KCLA01002676.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43536upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>326
                     /note="ultra-conserved element locus uce-4450"
BASE COUNT           90 a           74 c           52 g          110 t
ORIGIN      
        1 ctactgcact gtgcctgctc tgacagccaa cttctcacct tttccaccta gaagtcatgt
       61 acagtaaatt attttttctt ccagcaagac agaaatcaga actaatgttc ccttagatcc
      121 ttcccttccc cccagtttct gtggcacaaa ccagcccaca ataatcaaac cagagccatt
      181 tagtgtatag tctagtcttg ctgtgactaa taggatgatt ggttgtatag cttctttatg
      241 gttgttcatt atatcaccct tacataaagt aatttaattt cagtgggata attagggtat
      301 ttctaatcta actgatagtc tgaatg
//
LOCUS       KCLA01002677             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43551upu ultra-conserved element locus uce-5107,
            sequence.
ACCESSION   KCLA01002677
VERSION     KCLA01002677.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43551upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-5107"
BASE COUNT          205 a           98 c          112 g          164 t
ORIGIN      
        1 tggtagccat gacctacaaa attactttag ttacccaaac ctgagtgtta ttgaactcct
       61 ttacctagct ctgtcaaacc acatattagc aagcaagaaa gattcacaga agaatttcta
      121 aaaaacccat caggtgtgtc aaatctctga cattcagaaa ccattggggg aaagcagcac
      181 acgctgactt aagcactaat gtatggatgc tttaattaat ccggggtgaa tttaattgct
      241 ttagttaagt ggaaattggg ttaaaaatga tgcagagcat gctggggtgt gttaaaaaca
      301 tgacatatga gttggatgaa tcgataaatt aaaagcgcac agatgtttta attaaaccca
      361 ggaaagttaa cgaagatcac tagagacttt taagcctatg attaattcaa ttcatttaaa
      421 atacctgtag agatatgggg atgcctccat ttggggagtt atataagttc tcaatcaata
      481 agtacttaag ctgtttaaaa aaaaagaagg caggattttg agagaagtga ctgaacagca
      541 cttcacgcac actgaatatt tacattcttc tcaacactc
//
LOCUS       KCLA01002678             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43565upu ultra-conserved element locus uce-3383,
            sequence.
ACCESSION   KCLA01002678
VERSION     KCLA01002678.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43565upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-3383"
BASE COUNT          300 a          174 c          183 g          283 t
ORIGIN      
        1 tagtttactc tcacagaaag ggactctatc actagacata acaggctcat tccagttgct
       61 ttggtaaaac catgtttctg tgaatgcaaa taacagtttc tgcagtccct ggtggcactc
      121 tgaaataatt acaaggaaat ggggagagga gaatgggggg ggcagtggcg gcgagagtaa
      181 gaataaggaa acagacagaa aatctcttgt gaagagatca gagtattgca gagtaataac
      241 attttttttt ttatgaaatg tgactataat tttcaatttt accctatttg tttttcagaa
      301 ataacagcat gactccatct gtcaaagtgg aaaagattca tccaaagata gatggtgccc
      361 aactgaaagc tgctgttggt ccaacttgtt ctactactgt gagttcatca ataaagactg
      421 gccttaattg tccctcaata ccaaagccac ccttgccttc ccctggacag atactgaatg
      481 gtaaaggtct tctctctgtg cctccatatt tggaaaagaa acctgaagaa aacacaaaca
      541 ataggaaatt tttacataaa agattgtcag gtaattactt ttatttacta tttccttttg
      601 gtaaggcatc atagaagtat gtttcagaag taaatgcagt acatacaatc gtacgagtta
      661 tgatgtgtat tagaggttaa atctataatg acctacttgt aaaggatgtg aacaacttaa
      721 actgtggctg tagttttcag acgccatacg gaccctgaag gtctgttact acttacagtt
      781 ttaaaatttc gctcttccac tctctctgaa cacttccttt tcattctttc tgtatgaaag
      841 gtccaaatgt acatagaata cagaacaacc agggcctcaa atgcagaaat gtgaactcac
      901 actgcacttt acatgtttca gatagaatga tgtgtgtcag
//
LOCUS       KCLA01002679             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43580upu ultra-conserved element locus uce-6123,
            sequence.
ACCESSION   KCLA01002679
VERSION     KCLA01002679.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43580upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-6123"
BASE COUNT          252 a          198 c          231 g          124 t
ORIGIN      
        1 cctgctgcca gctgtagcag tgagggcaca agacaaggca aggaaagcag atgacacagt
       61 tgcaacctaa aggcatgcaa gtgtggtaca gggcactcgc ccacccacct gcactcacat
      121 gcctctggga atggtcacca ctgatggtta gagagccaag caagccaaag ccatcttccc
      181 tgagacacgc ttggtgccag agcagtgcta ccaccactgt tgcccctgca aaatctgcag
      241 cccaccagtg attgggggag gagggtgaga tctgagtgag cagcaagcgg gtggactggt
      301 ttggggagag ggagggaaaa gaatctacaa gcagaggaca caaacgtaca agctgagtgg
      361 tttgtaccgg cctttcttgc gctttctctt ttgacccttc ccctttcctc gttttgattt
      421 tctggaagaa aaacaaaaaa aaaacagaaa gaaagagaga cagaaggaaa gaaagggaga
      481 gagagagaaa acggaagaaa atgcaaggaa gagggtaaaa aaaaatacag ccttgctgga
      541 aggggagaag cacacaaggc aagactggag agcgagtccc acagctgaag cacagatctc
      601 cacatcacac tcacatccac cagccctcct gtgctcctgc cagcacacac agccaagcca
      661 gcaccagggg actcagcaga ggcagatctg ctggagcctc agaggggcac ctgccctctc
      721 cagagagggg cagtgggaaa agaggtgggg ggaagaacag aaaaagcctt gtgaaagcct
      781 cacacgacca tggtgagcgc agaca
//
LOCUS       KCLA01002680             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43595upu ultra-conserved element locus uce-6818,
            sequence.
ACCESSION   KCLA01002680
VERSION     KCLA01002680.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43595upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-6818"
BASE COUNT          242 a          145 c          199 g          264 t
ORIGIN      
        1 atcacttgcc aggggcaggg acacctctca ctagatgggg ttgctgtaaa ggatgttggt
       61 atgtaggaag tgagttctat acaacatgag cataaacttg aaaccctcaa ctgtgtaatt
      121 ttgtagattt tatcttcaag gaatctaaat gcaataagcg ttaaacagtg gaaccagagt
      181 tgcaaccaag acaatgcaga acaggtacaa gggggaaaaa aaacctcaaa ccccagagta
      241 taggaaaaca gctaattata gtaattgcag ctgatttcaa agtacttgta acagtttgtg
      301 cataatgctt acttgaaagc atcaaatggg cgatagttgt gaactggaac acctgtttgt
      361 tgttgagcat gtgtttatgc agatgatttt tgttgtcaaa gcaccttgat gtagagtagt
      421 cctgtttaca tttacattct ccccaaagga ttaacagtgt tctctcaata aatttgcagt
      481 ctattcttct ctcaaaggct gctgtttgga gggtggtgtg aacgaggcaa caagtgcttg
      541 ctaatcactt gaatatacat aattagcgac agtctggtgc actggaggct ttgtacagcc
      601 ataacaatgc tgattggcag cagcatataa cagtagtggt ggcaaggtgc tatttgttga
      661 atatttgaag gtgtttttct tttatatttg cagtgggcag tgggagttaa tgatgccatt
      721 attctggaac tgcattgtgt tgtgttagtg tcagagttaa ccatcagtca tggggcctct
      781 tgtactcaaa ggagtaatgc cttccttccc tcgtgatttt atgagactgg actggattcc
      841 attttttacc
//
LOCUS       KCLA01002681             994 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43611upu ultra-conserved element locus uce-772,
            sequence.
ACCESSION   KCLA01002681
VERSION     KCLA01002681.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43611upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>994
                     /note="ultra-conserved element locus uce-772"
BASE COUNT          311 a          194 c          171 g          318 t
ORIGIN      
        1 acacatgatt tcaccctttg aagaacaaac ccagtttcct ttagcttagc aataaaagcg
       61 gtttcactta gccggtgtca aagtttatcg tgtgacttta aagcgcctgg taactttacc
      121 agcataaatg aaatcatcac tgcatatggc ctcacaaggc aatttttttt ttaatgttga
      181 aaccattctt gcctataccc ccttgtcatt aactggtaaa tcagtaattt atttcctatt
      241 agaatttata tagtttgcag caattaagaa gaaaagcata attgctgaca aacccagggc
      301 actatttaaa tcacttcctt gttgacaaca tatttctcct tcctaaaact gaatgtcact
      361 gaaatctgat ttgtacagaa cccttgtgga ctcatcattc aaatgtactg cacctgtcac
      421 ctgtgtgcta gcattctgct aaggatcaat ttacataacc tcatttaatg gttcataaat
      481 catacccatt aagcccagct aacaggaacc aagggttcta atttatgctg cctttcatag
      541 cagaaaattg ggaggctgga gcctgtggat aaagaaccca ggtcttgcct ttgattgttg
      601 attgtgatgg taaatgtatg gatgatgaga acagattttc actttattga tttcctgcca
      661 aagcacagca tgctttattg tgaaaggggg ccttttggca gcagtgctaa aagtggcagt
      721 tgtttaggag ccctttgcca agatgacatc taagacaata ccgagtggta aatactaaaa
      781 taatatcaag ctgaaatgtt aattttttaa aagaaacctc cccaaaggtt cataaaatca
      841 atgatgcttt ccaccccaga gcacctcact aataaacatg aagccaggtg attactctgg
      901 gatcttaatt tttaaaagat ctatttttct taaattcttt attccagtat aaattattca
      961 tggtatttca gtcaaagtaa tgcagatgtt tgaa
//
LOCUS       KCLA01002682             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43626upu ultra-conserved element locus uce-7537,
            sequence.
ACCESSION   KCLA01002682
VERSION     KCLA01002682.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43626upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-7537"
BASE COUNT          116 a           75 c           81 g           92 t
ORIGIN      
        1 gatgcttatt agaccgaatg ggagttccat gcagccccga agatgtgagg aagatttgct
       61 aactctgctt tatactcttc atgcagataa ggaagactct cagtctccaa tcatgaacta
      121 gtattataca gggtactccc aaaggccata attacttcca gaagcagaaa tttgaatgac
      181 ccagataatt agttcagtgc agctggtcca aaaattattt acataaaagc cagttttact
      241 tgagggggaa gaaaaacaac cttgctgctg aaagaaaatg acccagttag cttcatgcaa
      301 tgagtctgag gaggcaacac atgagcggca acaccatggc ctgtgctgct gctagttttc
      361 agag
//
LOCUS       KCLA01002683             738 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43641upu ultra-conserved element locus uce-4591,
            sequence.
ACCESSION   KCLA01002683
VERSION     KCLA01002683.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 738)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..738
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43641upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>738
                     /note="ultra-conserved element locus uce-4591"
BASE COUNT          219 a          154 c          144 g          221 t
ORIGIN      
        1 gagatgagag agttgggaag agaagcaaac aataaaaaag ctcacaccaa accagtttgc
       61 cttctccttt tgtgcagtgc atgtaatgac tgaacttttg actttaaagt ttttctcagg
      121 tgcagtactg tgtaacaaga aacaaataaa caaataacaa aaaagatccc cttggtgcaa
      181 agatgggtct aaggcaatac ctgctgaggg gatttttttt ttctggttgt tgttgtttac
      241 ttgaagcaga taaaacaccc accttaaacc cgccctctat tcagttcagc agcacctcca
      301 tactccaata aaccgttttc attccatctg gcgtgcgttt gctctgaaga cattttcctg
      361 tcaatctctc ctgccacatt aaaaatctgt cattactatt gcattgccgc ctggctcctg
      421 agatttgtct gactgcttta ttgctcctct cattttttgc tacagccgag aagcagaaat
      481 aaaggtttgt tgttgaaaca tggccgcaag gaaagtagga ggcacacatc tgtcaaggta
      541 ttacctttct tcaaccaggg attaaggtgt tttactgctc tcgctactga gcagtcacac
      601 tgaataaatt ttctcagtag aacataaaaa tgaactcata cattttgaac tgggtttcat
      661 tctttcaagc caacccatat aattatgcaa tggcatcagt gttcaggggg aaaaagaaaa
      721 gtcagaaagg tttgtgtg
//
LOCUS       KCLA01002684             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43656upu ultra-conserved element locus uce-2529,
            sequence.
ACCESSION   KCLA01002684
VERSION     KCLA01002684.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43656upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-2529"
BASE COUNT          277 a          139 c          195 g          245 t
ORIGIN      
        1 gactgctgag gctttgtcac ctgcaattcc atggataaac agttgtaaat tctgtgcctt
       61 gttagacttg ctcaacggta tcgataattg tgatataaaa tgttaaagtt tttaaaataa
      121 caacagaaaa gaagggagaa attcctcttg tgcgtgtatg gttctttatg atccaacgtg
      181 caatgttttt ataggttgta tgtctgaaag gagggatgta taatgatgtt taatgtgtag
      241 ttgagaacga aatgattaca gttttatata tagtgaagcc atataacaaa agagcagtag
      301 ctagtgtttg cccttatatg agatgcagtc ctataatgga gagccttaaa gctagggttt
      361 actgtacttt gggaattaat cacataaact ataaattggg ttcaacaggc tggctgggta
      421 aataggcgca gctaatgagg acactatgag atcttataag agcgctgact gccccaggac
      481 aaaagtgccg agctgcacct gatggaaaac tagaagacat caaagcataa aggattagtg
      541 ctctcacagt gttgagaaat ggccaggggg agattcacca acttattacc cacatccaag
      601 ctaatcctgt tatctgcaaa atatgactgt gttcaggaac tgccaccacc taaacttgca
      661 ggagactaat tctatgttta catggacaaa agtgcgggga attttcatct gggcaaagaa
      721 tataagagat gaggattttt gagggtttcc tttctatcaa aggcatgaag aagggaaaat
      781 gtaaaatgag atctgtaatg actaatctct accctggatg gatatccgat tggacagaat
      841 tccttctctg caaata
//
LOCUS       KCLA01002685            1158 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43672upu ultra-conserved element locus uce-4863,
            sequence.
ACCESSION   KCLA01002685
VERSION     KCLA01002685.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1158)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1158)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1158
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43672upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1158
                     /note="ultra-conserved element locus uce-4863"
BASE COUNT          288 a          236 c          225 g          409 t
ORIGIN      
        1 aaaatgtttt acctccaaac taacaagcgt agcctcacat caaatttgaa tgggtcagga
       61 agcctttttc aaaaagcgct tcgaaaagaa aaactcaatg taattgacgc gaggagcagt
      121 ttcttaggtg catcttgttt tgctttatgt ctttctcagt gtgactgagg ctaattttac
      181 aacgtcaaat aacacgtcga agaactattt aacatgtttt tggttttcat ttaatattat
      241 agagggaagg ttgtaaattt cttttcgttc tttgatttgg gtattttggg gttgtttttc
      301 cttatttcta gtgttggaac caatatgttt taaaactaaa gaatgggtta ataagcttga
      361 aatagataac tacaactgaa aactgcacat taaggaaaag aaaagaaatc tcctattttg
      421 tctttgttgc cagaaatcac agtgtagtgt caaacactcc aaatgactgt caaatataaa
      481 ttcttcttcc actccatctt tggcagctgt ttgttaaggc atctaataac agatgtgaga
      541 actgtaatgt gtacaatgtg taagtgtcct tggctgtcag tcccattgca gtttcaatgt
      601 gtgttactat atgcagtata tactaagcta atgtagttgt tttgtccttt gtcttctctg
      661 tgctttatct ctagtccgga gtggtaaagt cccattcctg cagtcctagt gaaccagtga
      721 ttcttggggg ttagtggttt ttgtgtggtg gccttcctct gtaatgtcac cttatgctgc
      781 ttccactgtc tgtatacctt ttaatttctg ctgttgcttt gctgttgtgt attctcagac
      841 ctctctctcc ctcttcactt cacacttttc ccctctctcg ttctctcgct ctctcgttct
      901 ctcttcttca ctctcagaga taaaagactc ttaactagct caaggttaat ggagccattt
      961 ttcccacgga ggaattctgg gcgtgactta ctctcgcggt gtaccccaca atcactacag
     1021 agtaacgctc agatttatta agcaaattga cgccatgtag cctcagttgt taacattccc
     1081 agagtccctt gtgctcgaac tgtaagcaga gggtgcattt ctttggttgt ttgccagagt
     1141 cgtccgtaga gcgatgac
//
LOCUS       KCLA01002686            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43687upu ultra-conserved element locus uce-1624,
            sequence.
ACCESSION   KCLA01002686
VERSION     KCLA01002686.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43687upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-1624"
BASE COUNT          308 a          220 c          162 g          354 t
ORIGIN      
        1 gctgaggctg caccatataa accaaacaga cagagtttgg tcagtgcatt taattcaccc
       61 ttgtttctct gactgtcatt tgtttatcag acaaaggctg gtatggacct taatcaaaat
      121 gaagaaaatg aaattcccac taattaggga gatctcagca cttgctagat cttttcaaag
      181 attaagaggt taatcatttg cagtcagacg gtaagaaatg aacctcttgt ctcttccttc
      241 atcctctatg cagttcctcc atttcaacat ccttgttact aaatctgaga caatgtgtaa
      301 ttatacagaa ggaaatctct ctggggtata gctgaagttg cttaaattgt gctgatttac
      361 aaagacgaag gatttttatt tttttccccc aactagaaaa aaaaattacc tttttttcat
      421 aatggcaaac aacctcctgc aaagtcaact ccttttctga aagtcattgc tagttttata
      481 atttctgagt cattagataa cagatagaac tccacactta gtggtttcaa atgtttatgg
      541 tctgcaattc attcttaatg agctctctcc atgtctttat tcttcttcac accctcctgc
      601 tgggaaatgt cttactctgc cttggctttt gttaatgatt ccacaatcat ttcagagcca
      661 tttcttctgc cttatgtaat tctgacactg cataagagcc cggctctgca gcctcacagt
      721 tggaaatgta acctttaatg tattaatttc tcttgctcaa aacaatttaa cctctgtctt
      781 ggttttgtga ttgctaagtg ttccaattaa atgcctcttt cattttttgt cctggagggc
      841 ttgatcttac cagtattatg tttaacatac cctacctagc aaatgatgag cactccaggg
      901 tcccctcaag tgtactttat caatccatta tctatctcat gagtgtctgt cacgttttca
      961 aaacaacaac aggagagatt aattaaacta gttttaaaca ctaaataaca aaacccacta
     1021 catgtggaaa caaataatta caaa
//
LOCUS       KCLA01002687             994 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43703upu ultra-conserved element locus uce-6823,
            sequence.
ACCESSION   KCLA01002687
VERSION     KCLA01002687.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 994)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..994
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43703upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>994
                     /note="ultra-conserved element locus uce-6823"
BASE COUNT          334 a          165 c          145 g          350 t
ORIGIN      
        1 taatgacagt gttatgaatt caggaacagt ttcagatgca aacatggtag gctgcacagc
       61 taagacatag atatatcctt tatttagaat gacaaaaatc ttaaacatat ctttcagtac
      121 tgtctcatac aaacagtaca tcactagcct ggacaccaag acatttaaag ctatcattta
      181 gtaccataat aagtagtaat ttaaatacaa ggtaaaatca ttacattgtc ttgtttacta
      241 ctgatgttaa tgtcaagctg atgcgtaacg ctccaaaata ggcagcctat gatttgttat
      301 cattaaactg tcagttctgt catgtcttag gcacagactc atactatact tctttcagca
      361 tatcacttta ttttctatca gtcaaaaacc gaaccatttt aattgtgtct ctgctatttt
      421 tctattaacc gtttcatgca ttttttctct ggccttttaa ttgcagttta atagtggtca
      481 ttaacacatt aaggggtgtt agaagaacat ttgaagtcct cttgacttct accaaagttg
      541 acacttcaat gctagagtaa tttcagctat tcatttattt aatagtgacc tatgcaaatg
      601 tggaaccatg tcattttaca aattgactgt aataattaac tagaaaggca gagtaaaatg
      661 aaacaggtta taattagaat aaaactgcta cagtattacg tcagctagaa taaaataatc
      721 tgaaatgatt aaattggttt caattattaa gaatcagttt aatgtaccca ctgttctgat
      781 tttttacatt tctctttttt gtgtgcatta gatgtcacct cacacaattt atgcatttta
      841 ttcatcttgg taaaacaggc attacaaagt ttaattaagt agtaaaagac ttcatattat
      901 tccgttgaat tctaaattag ttgcagaaag aaatgatagt gcatagtaca taccattcat
      961 acacatttca attagatgca tctattgtta gcta
//
LOCUS       KCLA01002688             977 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43718upu ultra-conserved element locus uce-3609,
            sequence.
ACCESSION   KCLA01002688
VERSION     KCLA01002688.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 977)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 977)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..977
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43718upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>977
                     /note="ultra-conserved element locus uce-3609"
BASE COUNT          352 a          179 c          203 g          243 t
ORIGIN      
        1 aatgctaatt atatattact aaagaataga gatagaaagg gaaatatgag cattaaaaga
       61 aagataaaca tcccagtgct gaatttaaaa tgaaaaaaaa agaaaaaaaa ctttcaatgt
      121 ctttgtagct cactgtcatc aaccaaagac ataatgaagc ctgaattaaa aacgtcagtt
      181 tctgtgaatg ttgataactt ggctctttgt tgtacaagtc aaaatgtgtc tgtttgatgg
      241 gttaaaatga cagtctgcaa atgggagaag ctagagctaa aaaaagaaga cacttcccaa
      301 aagacttata aaaagtaggc ccgtaatgca gtactttaag gagaagacct gtagggtaga
      361 agagccagta tctttaggaa gtaaccaagc agcactaaaa ggtaatgtcc atggccaatc
      421 aaaactattt ctctagctgc tggggctctt gcatctctgt cttcacacta gactggaaac
      481 cctttgtact aattgccaga ctgtaccaga ttttctggtt cagttccatc ccataattga
      541 ccgacaatga tgggcaagga aggggaaaaa ttcaggctca ccactgcaag cagagggtca
      601 gaaatggttt catagggagc acatcactgc ttggcactaa atgcagggtt aagcaagcat
      661 catctgtact ttcctctaat tcctgggtta aacgggggat gggaaaacat tcacgctgta
      721 gcagggtaaa gagaagatgt tgaaaactgg cataaaaacc ttccacaagg ataagaaaac
      781 acctggagga cttttggaag ttggtctcta atcgtggcat cggtacgtta cttaaattga
      841 ataaagcagt tgtgaaacaa cacctcccat aattacagta aacataaaac tatctgccta
      901 taaagttact tctccaagga gccaaatgaa ttcactgcct gatgcacaga aatgttagaa
      961 atacaggcac acagcaa
//
LOCUS       KCLA01002689             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43733upu ultra-conserved element locus uce-2442,
            sequence.
ACCESSION   KCLA01002689
VERSION     KCLA01002689.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43733upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-2442"
BASE COUNT          229 a          174 c          188 g          285 t
ORIGIN      
        1 cagaattaag taatggagac cctctcctcc ttgccctctg ttttgaaact ctgtggataa
       61 gtatgagcaa aagaactgga aggtgcaaat tgtgtgttaa agtactggtt tgagatttga
      121 tgtttggagt ctgctctaaa tctgcacttt tcagttaatt ctctttttca ggagtttgtg
      181 gagagtagta gaaaatctat gaaagaagct ggccgaggag gtggagctga gggcagagag
      241 ctaaaaccaa tggtaggtgc agatgaggag gtggcgatcc tccaagagtt tcacttttac
      301 ttcttcaccc tctttgtctt tactgactgc acttcttcag gagaagtttt tgttctctgt
      361 atcactcaag atgttctgct ttttctgttt gtgagcttgc ctatcacctg gatggcagag
      421 tttttgtcac agctgagacc atctcctgta aaagtaagat gaaaggaact gtgtcatatg
      481 aaacaaatgc agtaacattt ctttaggatt agtagtgctt gctatgtggt atacacagac
      541 agccccagtt gctgagtact ctcaaaacag atggaattca ttgggctatt ctgactttag
      601 tcctctttgc agccctgagc taaacaattt ttgttcatct tacattcgcc gtgaaagcct
      661 gaagaacact actgagcgca tccattgttg caaagtagga ccaggcaatt aaagctctca
      721 ccaaattatt atattcagtg acaaggaatt gggtacagtg attcctttca acctgctcaa
      781 atgacatttc tcccaattgt ttgtttttat tgccaactac ttatgttgct tgtctcttgt
      841 gtgctctttc catctcacac tgtcagatac acagac
//
LOCUS       KCLA01002690             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43749upu ultra-conserved element locus uce-5215,
            sequence.
ACCESSION   KCLA01002690
VERSION     KCLA01002690.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43749upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-5215"
BASE COUNT          165 a          216 c          181 g          260 t
ORIGIN      
        1 cctgtcccaa caggacagtt aagccctcta ctccaccccc cagtgggggc cttttttttc
       61 ttccccacca gctttgagca gccctgtttc agattggcct ttttatgttt gatataaaga
      121 atagttgttg gccaattcca tcttttcatc gctgctctcc aggcccgggt ccaagcggct
      181 tgtcagatgc tcattaactc cccctttggc tctttccagt gtgtcttcta agctcattgt
      241 gccaagaact agcgcttctt tctctttaca cggctccctt tctctgctcc atcagggaga
      301 caaattactt tccaaaaggg atcgccaggg atggtttaat gagaatttct ctagggctgg
      361 ccgtggaaat caatgtagtt aacattcggt gcacttaatt ggacttttct cttctgtctc
      421 cttcaaaaaa actctgaagc tatcctgtta atctctcatt tgtaatcaat tgtgttgact
      481 aaacaaaagt ctaggtcgtc ctttcttcct gtcccagaca atcctttgtt gcctctaaat
      541 gcctcattct tgagtgctcc tggtcgtgta gatgggtccg attgttgaca gttcattatt
      601 gcgcttttgt ccatttaatc tccctcgctg tgttttgcat gtgcatgcct taatgagctc
      661 cgttggcaat taacatgttt ctagcagcaa actggttgct cagacgtttg gagagcggag
      721 tgcagggaaa agggcaacgc agctgccttt aggttgttcc cttcccggtg cccggcggga
      781 tacacctggg tgccgacgct ccaggggaga cccgagccga gc
//
LOCUS       KCLA01002691             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43764upu ultra-conserved element locus uce-603,
            sequence.
ACCESSION   KCLA01002691
VERSION     KCLA01002691.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43764upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-603"
BASE COUNT          160 a          136 c          170 g          165 t
ORIGIN      
        1 ccccaccccc ttcacttgct ctcccttctt tttccccccc tcctgccttg ggagtgacga
       61 tgaagatcat ttgctggtgt gattggcagg tcagaggatt caatcagatg agttcctctt
      121 agtgtgggtc aaaaaggcta gttagcagga gctgtcgaaa aatgccagca gcattcgaaa
      181 tgggaaatgt cgtgacttcc aggcaggggg tgccacctgg aacacagagc ccccagctca
      241 ttagcaactt acaggatggc agcttaactg gaggcagcgg aggaggaaag ataataccca
      301 atagggaaaa tgatggtgaa gtggaattga tttcatgtat aatttgttta tcactagagg
      361 ggacaaacgc tgtcctcctg acatgtgcgg aggagtgtgg actgtgaatg aagcaactta
      421 gcataatctc caggttgagc tctgggttta aagaatgcca agttctttct tcccaactgt
      481 ggaagcgatc aggtcacgtt ggattaatta aacctgacgg cctctcaaac ggtttatctg
      541 ggcaattttt gcaatttatc agagcgcggt agatcggagc gcattcatta ttaaccacgg
      601 gacgtggttt gcattctgga tgcggtgctg g
//
LOCUS       KCLA01002692             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43780upu ultra-conserved element locus uce-5576,
            sequence.
ACCESSION   KCLA01002692
VERSION     KCLA01002692.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43780upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-5576"
BASE COUNT          122 a           72 c           81 g          124 t
ORIGIN      
        1 gtggccccat tgtgctacca ttcttcaaga aacctaataa tctgcatgaa ctaattctga
       61 cttactgatg gcctgcttca ttaaatcagg gtgatttttt cctgtgaata atggccaatg
      121 tagtgtgcca ataccttgag agtctctctt agtcttgatc tcattttaat ttacagggta
      181 atactacaat aatatcacta atggaaggta cattaaaggg catcaagcag cattaactgt
      241 attaaattat ggcacttgtg ttaattaact gctgaagcaa gatggtccta atggctagaa
      301 aggtcgccta atgcataaat aaagtcttct gggatggaaa actaagaaag agcagacatt
      361 tttcccttca tctgggctta ctgtggagaa tcagagggt
//
LOCUS       KCLA01002693             474 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43796upu ultra-conserved element locus uce-5377,
            sequence.
ACCESSION   KCLA01002693
VERSION     KCLA01002693.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 474)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..474
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43796upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>474
                     /note="ultra-conserved element locus uce-5377"
BASE COUNT          126 a          100 c          125 g          123 t
ORIGIN      
        1 agtgctcttc cctcccttct cccccctccc caggataaaa aaataaaaat aataataggg
       61 gtaataagag aggaggtaat ggaacgttct ccaactgggc acatgtcaga agccattata
      121 tgtggtgcag atttgcataa ttcaagaagc atcaaattaa atttgcataa ttcctttgat
      181 tacacttgtt attaaatgta agtgacattg atttacaaaa tggcccaata taaggttaat
      241 agcaaatgtc accttccagc agggtgaata gggtgcgtgt gtggtggtgg tggtgatgga
      301 ggagggggag aggggggcct gggaggaagg caagcagaca attgatttct gctcctctct
      361 cttccttaaa gggctcaggt ctcctttgca gaggaacccc cagctcccca agggttgcac
      421 tggtctctcg tgcggccgca gcgctgttag gagtgccctc caactggtgt cggt
//
LOCUS       KCLA01002694             659 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43812upu ultra-conserved element locus uce-5677,
            sequence.
ACCESSION   KCLA01002694
VERSION     KCLA01002694.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 659)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..659
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43812upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>659
                     /note="ultra-conserved element locus uce-5677"
BASE COUNT          176 a          138 c          158 g          187 t
ORIGIN      
        1 ataagaaagg gactaagagc tctctcagca atgtagacat tagcatcgct gctctgctac
       61 tttaatccct atcattgttt ataaaggggc tgcacgcaag gttaccgact gattgctgaa
      121 ggcgtatatg tatatttgtt ttaattgcaa cagcaacatt tgggttccac cttaacagtg
      181 caccttaaaa gattatctcg gttatttcac aggcaccgag ccggcactaa tagtccaagg
      241 cagatattga aaagcagcac agggccaggc agatctatta gaaattccca tccacgcgcc
      301 tcatacatat tgatttctga caccaagcag cagtgaaagc ccccgtggga ataatatatt
      361 tagcagggtt cgctgcgagg aggtcacaga gtgcatacag attagctgca gaggaccaag
      421 gcgctagtgt tggagccaaa tgctagattt tatatcattt taatctgaac ttttataatc
      481 cttttagttc ttctttctct gggtggcaga ggaaaggctc tggcgcatgc atcaggcatc
      541 ttttctttct ctttattccc cctataaatg tgcaaatgct gctttaatgg ggaggaatgt
      601 acccttagcg ttagcggaga gaggcacggg gttatagatg ggtgcgcgct ggtgtgtgt
//
LOCUS       KCLA01002695             326 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43843upu ultra-conserved element locus uce-6437,
            sequence.
ACCESSION   KCLA01002695
VERSION     KCLA01002695.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 326)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..326
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43843upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>326
                     /note="ultra-conserved element locus uce-6437"
BASE COUNT          108 a           59 c           70 g           89 t
ORIGIN      
        1 aggggccagg atggggctaa aatttcccct tgaacatgat gtcaatatgt tggcatgtct
       61 ccttttatta agatgccatc caactgataa caagtcctgc tgtgttttac caacataaaa
      121 aattagactg gagaccagag agcggcaggt ggcttttggc accaagaaat aatcacactt
      181 gatgtggaaa gtaaagtaaa aggagccatc tgttcactgc aggaggacgt gaaaaatcac
      241 attaacatat tgtcactaac atcatgaaat acacagttaa taataaattt agttatcatg
      301 gcaagctgca ttgggtgctt tcttag
//
LOCUS       KCLA01002696             711 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43859upu ultra-conserved element locus uce-4608,
            sequence.
ACCESSION   KCLA01002696
VERSION     KCLA01002696.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 711)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..711
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43859upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>711
                     /note="ultra-conserved element locus uce-4608"
BASE COUNT          208 a          151 c          132 g          220 t
ORIGIN      
        1 attacctttc ttcattaaaa aataaaacaa ccaggaggtc tagcacgtta tgtcactaag
       61 tcacacagta agagggacca tcaaagaata gtgggaatta tcacagcagc ttgctacttg
      121 ttagaagcat ttacctcatg accctttcat ttgcctactg ccactttagt ttaagagtga
      181 caacactgta tagcactctg cactttccac tcttgctttc cctcagcacc agatgccttt
      241 gtaaagcagg ctggtgaagc agcgaacaaa accttgtggg ataagtctga cactggaagt
      301 taatgattat cagtcgaaac aaaacacttg tttacatgtt gtagtcatta gaggttccag
      361 tcagtcatac ctcggctggg attcctgcca aatgttttga gggttctttc acaagctgtg
      421 cagttttgta aatacaaaag cactcttatt aagccttttt agtattagac tgtgcaatta
      481 agattacggg taattagatg ccttcatttg gagtagaatg gtccaagata cacacacaac
      541 attcctagct acaggatact gttggatctc tatttgggtg ttccattaca gatcagtgac
      601 taagagaaac tcctctgtat tgtgcacatt ttttctttat taaaaattgc acttaaaact
      661 tgaggcagta tgaatttttc ctcacctgac tgtcatcacc tccactgcag c
//
LOCUS       KCLA01002697             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43875upu ultra-conserved element locus uce-2090,
            sequence.
ACCESSION   KCLA01002697
VERSION     KCLA01002697.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43875upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-2090"
BASE COUNT          262 a          209 c          206 g          284 t
ORIGIN      
        1 tgattttgct gaaacctact ttggaacgct atggcttgga ttgatgttat ccaatgccat
       61 ttgtatcagg gtttcactgt attcagagga gtcactgcag gctgctggtg cccatgattg
      121 cctctgacac atacagctga aagagctctt attccaagaa tgatcttctt ttttagtctg
      181 tattgagttg ggactgattt tgatagccag tttcagtcaa gaatcataaa gttattgcac
      241 atttaagtcc gtcagtatga gaatcattct ctgtctctct gcctccccct ctcactgttt
      301 tttcccctcc ctttctctct ctcatcattt cacaggactg caaggttaca gaaaggtcta
      361 atcaattgtc aaactctcct ttatctctga gaaggtggta aaaaaatcta actgccctgc
      421 cgtagggcat tcttctaact acacagcacc ctttttcaca tacaatgcta ccatgattaa
      481 tgtcctccca cctcagacct tgttaaagcc tgttctttaa agcaggctgg tgcaccacag
      541 tgagagcaag agcaaggttg cataaatcaa cgtgttctca cagcccccag gatatccatt
      601 atagatgcca gctggatgac tggaagatag agaaaaatga atattgtatc ctgtggcctt
      661 ttgcctctaa tgaccacttt tcaacatttt tgaaggcatg attaaatttt gataactggg
      721 gaagtcactc tgagcaggct gaaatagaga taaattgact gagggtctga catcccagtg
      781 gagagcaggc aactaattag tgtgcgaatc gcactctgaa agagatgtaa aagggaggct
      841 ggtttaatca gaggagttgc tgaggtacag gaatagtcag ggataatagc ggcctaggta
      901 gaaatcacag gctcaacaag cagctatttc tgtctgcttg attggcagcc actgacctag
      961 t
//
LOCUS       KCLA01002698             830 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43889upu ultra-conserved element locus uce-6771,
            sequence.
ACCESSION   KCLA01002698
VERSION     KCLA01002698.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 830)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..830
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43889upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>830
                     /note="ultra-conserved element locus uce-6771"
BASE COUNT          210 a          217 c          157 g          246 t
ORIGIN      
        1 tcagcagcct ggtgtcaaca gggtaagtgg gagaatggtt ttcaagccac tgcaagtttc
       61 accatccatc tcaccactgt ggacataatg aatatgaaat actcaccaga ttttaaaata
      121 agctgtttta ggaggaaggt gagtttgttt tttaaatacc taccttttca acaacgaatt
      181 tttctaagac agcctgcaaa ctctcacgct gatagaacca agcagcaggt atgtccttgt
      241 gtctcctttc cgaggcgagg agccgcaaag caggcatgga aaaaccttct ccctcctcct
      301 ccctttcctc cctccccaca cttctcttga tgtgctggtg gctcctaaaa ggattaatta
      361 gaaagatgtg agcaggggtt ggaacgtcaa aaaacaatcg tcactttcat atctgacccc
      421 tatcaccagc tgcagaatta acaaattgaa tgtcgtcagc aaacaggagt tgcagatgat
      481 atgaagttca ttactagcag cacagggctt gttttcaaag cccagtttaa acaactcttg
      541 ctgattaaat tcctcacagg ggctcctgcc agacacgttt agaaaatacg gacatctaac
      601 gaccctctct ttctttcctt gtcttgtctt ttttttcccc cctctctttt ttttttttgt
      661 ttcttaacat gtgccaatta tttgtctcct atctgcaggt actggcaagt atcagcgctc
      721 tggccccact gtctacagcc ttatccattt ggcgcctgct ccagccctct cacattacca
      781 gcagcagggt ctgttttcag ctgtgaaaag ctgtgagcac cactccctcc
//
LOCUS       KCLA01002699             597 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43903upu ultra-conserved element locus uce-2780,
            sequence.
ACCESSION   KCLA01002699
VERSION     KCLA01002699.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 597)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..597
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43903upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>597
                     /note="ultra-conserved element locus uce-2780"
BASE COUNT          182 a          121 c          101 g          193 t
ORIGIN      
        1 aaaactacta caacacatag agaccttttc tatcctgtgt gatgacaagg agggcattta
       61 ctaaacagag tccaaatgaa aagctgacat agctttttag attatatctc attcattttt
      121 ctactttctg tatagccttt ctttatagca gttgaatccc taaatacctc actactttgt
      181 attgtcaggt cacctcttag gttagcctga gaaagcctga gaaaagttcc acaggaaaga
      241 tgcactattt aacggaattc aatctgtccc aatagatttg aatcactaac ataaatgtat
      301 gaatgtagat tatatctctg taatgaggcc tgaatcattc tcagttactt caaaggactg
      361 aaattcaacc ttccttttta gcagcaacaa tcagacctta atgggttcct ttattaattg
      421 ttccattgct aagcttgaaa agcagctacc ttcagtacag gtcctagact agaaatggta
      481 cctgctgctt ctaaagcagt atttctgttt tgcgttttac tgctctcaga gtctgcggaa
      541 agttttctgt gctgcagttt cgtaaatatg ctgacccatc cagaagtgaa aacaaaa
//
LOCUS       KCLA01002700             957 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43919upu ultra-conserved element locus uce-4224,
            sequence.
ACCESSION   KCLA01002700
VERSION     KCLA01002700.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 957)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..957
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43919upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>957
                     /note="ultra-conserved element locus uce-4224"
BASE COUNT          229 a          281 c          270 g          177 t
ORIGIN      
        1 gatacaaccc gaagggatga aaacatttaa gtgctacctg ctatcagagg catcccctca
       61 cacccagagg ctgggaggct gagaatgaag gcaggagcat gggctcagcc taggaggagc
      121 tgttcaggaa ggcatggagc aactagcatc ttcctctgac ctgaccccga tcctatgctc
      181 ccagctggta ctaagcccag ctcccacggc tagagagcag aggtggccag agaatccatg
      241 gggcttctcc gaacagaaag gggggtggaa ggatgagctg ctgggaggcc cggggtccgg
      301 gtggcaacac agagaagtgc cagaggagca tgccatggtc cagcggctgg ccatgcaccc
      361 tctcactcac ttcctttcct ccctcgcctc tctgccggtc ggcttgctac atacctcctt
      421 tcctacaaat tttcttgttg ggctttcggg tgcattcctt ggaaatccgt tttactgtaa
      481 aatgaataaa agactacaaa ataacaggag gctccaccgc tgggagtggg catgcaatca
      541 caaccacgct gctgccctcc caccacccct gggaccgtgg aagtggggag ggagcatcgc
      601 cgtgggagga aaactctggg tcagccgtgc tgggcgggaa ggaaggcatg attcatccca
      661 cagccaaggg ctccagggac agaggagtga agccagctgg cctggaagaa gctaccagcc
      721 tgctctgcca cgcacagcag acccactgtg ggtcccttcc agtccactca aaatccccag
      781 ggactcccgt tgcagtgagg ctgcagtgga tgcatgggca ggctctgcct cctctaccat
      841 ctacttacag ttcaggtagg atcccctata aaggaaaagg ttagacaagg aggcacccag
      901 caccgctcag cctcacccca acaggaacat gtcctgtagg tccctagcac cccaggc
//
LOCUS       KCLA01002701            1144 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43935upu ultra-conserved element locus uce-2415,
            sequence.
ACCESSION   KCLA01002701
VERSION     KCLA01002701.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1144)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43935upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1144
                     /note="ultra-conserved element locus uce-2415"
BASE COUNT          340 a          275 c          223 g          306 t
ORIGIN      
        1 ctctacttgc agctgtattt cagtaaagga tacatatttt taatccgtgt gatacagctc
       61 tgaaagctat ccagccaatt ccatgtcagc cactgctgga tatgctttta ctgaaataaa
      121 aggccttttg gcctgatcca aactcagcgc tagtacagtc ctcagtattc cttgatagct
      181 cgtttatgtc atacctttgt cttcaatcct aatatatttt tagcggaaac ttaagcagaa
      241 gcagctcaga tgaccatctg acatctgcaa caaactgatg atcaacgtgt cctccctgtc
      301 aagccaggaa aaatagtgtc ttctctatct ggcattgtac aaatcacaga gctgaggtac
      361 aggaaaaaac attaagcagc aagtacagat accagacctt taggaagcat cctgagatgg
      421 agcaggagga tctttattct caggctctgg aggaggagct ggcacacttt cctctttctt
      481 ttgtgcagcc aaaaattcat gaattgctct ctctatctga ggcctgaaga tgtggtttag
      541 ttttggatcc accacctgag aaataattct gtccactcca acttccagca ttcctgacct
      601 tgaacaaaga caaaggagcc attcagcaac tctgaaaaac ttctcccaga tctcctccag
      661 taattctcca gagccctcct gtcaactgca attagcatta acatggtgag aactgcagcc
      721 cactcaatag atccttaaca gggacttgtt tcagtcacct atttcccccc accccctctc
      781 acttctccct acagaattaa caactgacat ctggtctccc aggtacttgg acaagagcca
      841 ctttaaaagg actcatgtgg agatgaggtc aacatgaaag caaacaaaca cattttggca
      901 caaacaaggg aaaggagcta ttctgaggag gagggcaggt gagagcacag tcttttattt
      961 ggctgatggg aggaagaaga ggcctgcccc ctaataacac tactgccact cactccttgt
     1021 aactgttagt ctagacagat gggtattaat tataaaaaca agcacatgta gcacacagca
     1081 aagtttttga aactgaacac tagtaactga agtgacttat tacttcagag gctgtgtctg
     1141 actc
//
LOCUS       KCLA01002702             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43951upu ultra-conserved element locus uce-5568,
            sequence.
ACCESSION   KCLA01002702
VERSION     KCLA01002702.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43951upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-5568"
BASE COUNT          140 a          206 c          156 g          110 t
ORIGIN      
        1 gctttccctg gtgtgagaat gggttcacag aaagttcagt ttttcacagc aaaatcgaaa
       61 aattaaaagg agcgagaaag caggggtcct ccaccaatac acacacgcac acatcccccg
      121 cccgtgcctc cctcctcgcc ccacgaggat gcagactgta ccccatgcac atcggaaatg
      181 gacccggcga ggctctcggc gcagcatgca cacgcggaag ggagggagta ggatgccttc
      241 gctcggtctg atcatcacca taaagagtta aagagagagt gaaatggcta acgtacacac
      301 accccgctcc ataccggaga agagtctccc agctgaggtt tatgctctgt gaggaccagg
      361 ctgaaactga ccgcccccac ggccacgctg gacaccccta accctatctc cagcacggag
      421 agcaccagga ggctcccgat gatctggctg ctggtgcaca tcctccctcg gtcatccttc
      481 cttcccgatc agctgggaaa aacgcgcatc ctgcttctcc ggcgctcccg ccgccctaag
      541 tcgcccccaa acttttcttc cttctccagc agccggggcg gagcggctca tccgcggccg
      601 gcgagcgctg ct
//
LOCUS       KCLA01002703             917 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43967upu ultra-conserved element locus uce-4976,
            sequence.
ACCESSION   KCLA01002703
VERSION     KCLA01002703.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43967upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>917
                     /note="ultra-conserved element locus uce-4976"
BASE COUNT          290 a          200 c          229 g          198 t
ORIGIN      
        1 gagataccga cagaattagt ctgtaagttt tgtgatacct taacaggatt tctgacaagg
       61 aagtaatact tcagtaccct ctgatggctt tctgggggct ttctaaaaat ctttctcttt
      121 ttttaatgta ttatgaatgc ctagtccctc atgtcgcctg ggtgaaaaca ttatatgaag
      181 atgtaggaag gggccaggag tcaggaccgc agagtgcagt tgtccagcag ctgggatgct
      241 gtggctgcgt gctaacgtta ttaattgact tttctgtttt gtttccttcc ttctgctctc
      301 cccgtgacac tcctggcatt gcaggtctct aaagtcaacg ggatcactcg aatgtcatcg
      361 ccgagtgcaa atgcagccag tgccaaaaag atgagagaag tcagaccttc accgtccaaa
      421 actgtgaagt acactgcaac agtgacaaag ggaactgtca cgtacaccaa agccaagaaa
      481 gaactggtca aggaaaccaa actaaatcac cacaaaccca gttcacctgt caaccacaca
      541 atctcaggga aaatcgaaag tagcaatgca aaaacccgca aacaggtgct atcccttgga
      601 gcatccaagt ctaacaatac cgctgtcaat ggtgtaaaag tcaatggcaa gttgaaccaa
      661 aagacgtgca ctaaggaggt ggggagacag ttaagggagg ggctgcgcaa ttccaagagg
      721 aggctggaag agacgaatca cgtagacaaa atacagtcgc ccaccaagag aatgaaaggg
      781 gctgtcaact tggcagaagc tgccggcaaa aaggcagccg tagaaaagcc tttgctgaat
      841 ggacacctta ggaaggaagt gccggagaag agtttggaaa gaaataggcc gaaaagagcc
      901 actgctggaa agagtac
//
LOCUS       KCLA01002704             320 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43982upu ultra-conserved element locus uce-3497,
            sequence.
ACCESSION   KCLA01002704
VERSION     KCLA01002704.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 320)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..320
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43982upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>320
                     /note="ultra-conserved element locus uce-3497"
BASE COUNT          107 a           56 c           62 g           95 t
ORIGIN      
        1 tacaaagagg gaatagagaa tgctgttttc tttttaaaaa cattttaaaa atggtaactg
       61 catcctgctc ttgtagatgt attacttatg acatcccagt tttcatccgt tcatgatttt
      121 acattagagt taaatctctg cagcttgaat ctcacggctg agttagccag agcccataaa
      181 atattgaaac ctttagagca gcagccagcc aggttgagag aagttcatgt ccaaagctga
      241 gctttagatt ctgagacatc ccaattggag tgtagtacag aaaaaagcac tgataaaatt
      301 ttcataaaaa tgagctaagg
//
LOCUS       KCLA01002705             941 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 43998upu ultra-conserved element locus uce-5186,
            sequence.
ACCESSION   KCLA01002705
VERSION     KCLA01002705.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 941)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..941
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="43998upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>941
                     /note="ultra-conserved element locus uce-5186"
BASE COUNT          304 a          221 c          199 g          217 t
ORIGIN      
        1 aagcccctaa agtgacgagc cctcgactcc aaaagcaggc aaacgcagcg tgcccaggct
       61 ttcagcatgg cactgtggtg gccagcaagc aataaaccag ctagaccaag tttcacacca
      121 tccgaagtcc aaacagctat agaagacatc aaatatctgg aaactcaaaa tagcaagagc
      181 ccgagcaatg aggccacaga gcaaggaaag cagcagcctt cccgtggcaa gaacagcaaa
      241 aaagcctcgg tggagcatgt tgtacctgca acacacttca tgctctattc tccgcggagg
      301 gcttttcaac accaaaatgg gggacaaggt gaagagaagg gagtttaaag tgcaagctgc
      361 gctctctgct ccaaaaagca cactgtgctg attcaaaaaa aaaaatttca aaaatgcctg
      421 tgggtaaatt tgagctgccc acagctcccc aggggcagcc gaacttgctg tcgagccatt
      481 tatgtggatt tcagtcaaat tctaatttta gtgttcatta aacatgggta attcccaagc
      541 caatccctgc atcacctagt atacataata cctctacaat ataggtcatc ctagcttaga
      601 aaacatatac agacatcaaa gtgcaaccgt ttcattgtaa gtattaactt tataaataat
      661 tatgaacttc ttaattcttt acaagatgct gtataatcac aaatgtttaa aaaaaatgac
      721 aatagggagg cgagtgcttt gctctgtagg tgcacaggta tgtataaccg gcccacacca
      781 agtatcagag caaagagaga ggtctaaata ggcacttctc tgtctactcg aagcagtagg
      841 atgttttcct gaaacgtagg ctatctttgc tccagccgaa agaaagcccc aaacctgcag
      901 tcctaagagg tgttctcagc tggcttctac atctgtgcag g
//
LOCUS       KCLA01002706             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44013upu ultra-conserved element locus uce-4287,
            sequence.
ACCESSION   KCLA01002706
VERSION     KCLA01002706.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44013upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-4287"
BASE COUNT          184 a          108 c           96 g          202 t
ORIGIN      
        1 aaatgcttgt gatttattgc cgtaaagacc ccagatccat atctcttttt cttacattat
       61 gttattcaaa aacttgtatg aaccatgagc tggcatgttg tagaatactg aaaaggcatt
      121 aatcaaccta aataaacaag tgcgtagatc tatctagcaa ctacgaagta gttaataaat
      181 ttttagcaat tttattagag agagaaggtc taaaagagta gtgcttaatt atctggactc
      241 cactgtgctg ggctctcttt tgattgtatt aatgaagcag ctggcccatt gtttctcttt
      301 aattcctcta ttgttttaag aatatgtcac agctctttat tcttttatca ggtgctgtgc
      361 aggaggatcc acacaatacc tcatattcct actgtatttg ccaatgcaca aagaaacctc
      421 caaagcattt ttcaaagaag gggcacacat aatttataag ttccgttcct tgtaccactc
      481 tactgtcaaa aattcaacag tattggattg gaattaatta tcatttttta ttaaacaatg
      541 tggctacgta tagatatatg gacttcattc acgtcagaat tacacatctg
//
LOCUS       KCLA01002707             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44029upu ultra-conserved element locus uce-6137,
            sequence.
ACCESSION   KCLA01002707
VERSION     KCLA01002707.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44029upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-6137"
BASE COUNT          168 a          164 c          176 g          139 t
ORIGIN      
        1 cctagagaag ctgccttcag catctcgttt ctaataaccc aacatattcc cttaatacag
       61 cccggctcct tccaagccgt tagcggcggc aggagacaga gcccgaacgc tgccccggtt
      121 tgctccccaa gccagagcaa agagaaacct ggccataatc atttccaaac atgaaaatgg
      181 ctccattgtc attacagcgc agagattgaa tccgcctcat caaagcggcg tgtgacaggt
      241 gactcaatag gacggtgcca agcgccgagg cagggagatt agcggggcac tgatatcatt
      301 atttccgcct atcacgggtt cggcagggag gcaattgtaa tttcggggct tattagtctg
      361 cattcgcagg gaaaaaaacg tgataaagct gacggtgaca gccaggcatt tgtgcggcaa
      421 gtgctgtcac agtgacactc agcaaatgcc aacgtggcta cgatcgccta atccccccta
      481 atggaggtta aagcgtggca caaaggcgct cttatcgatg agcgggacgc taatcacgtt
      541 tgcattttta agttaaatat aggaagggga gagggaggct cctctccgtc acgttggccg
      601 tgaaggcgga ggaagctctg ctggtctcta gttccgatga gaacgcg
//
LOCUS       KCLA01002708             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44044upu ultra-conserved element locus uce-812,
            sequence.
ACCESSION   KCLA01002708
VERSION     KCLA01002708.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44044upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-812"
BASE COUNT          307 a          183 c          179 g          309 t
ORIGIN      
        1 aaaggaatta tttgcaattt cacattgcaa caagtcatga catgaagcta agtatgggcc
       61 atttcttcac agatacacag gatcctatgc ccagaatagt ttggagctgc tggtgacctg
      121 gctgatactt agcatcgtaa gtggtagcca aggcaagaat tatttttgtt tacacatgca
      181 aagggactga tctgccactg tcaggccgct tgggaatagc tttttgtacc cacatgtacg
      241 atatagaact gtttcaatag gcatttcctg ttaagaacca gaaacaccaa gaagcaacta
      301 atggttcctt ttagacagaa cagtactgtg atagaaaatg tatctgatac cctgcaatgc
      361 aattaccaca gcgtattctt gatgtatagg cttgacacag taaagtaggg tacacaagca
      421 ccatgtggct caaattctga attttatttg cctgtcggtt gagctacatg ctcgcttcat
      481 tgagcatgac aacctagttt taagtgtcat ttaattttca ttttgaaata taattacaaa
      541 gtgttcactg taagatatca ctcgtctgca aatgtgtcaa gattaatttg tgctagctta
      601 ttcacaagtg tcaatagtta attactgtgt catctctgga tggctaaatg acattctaac
      661 ttctgatttt ttccagtgtt cctttatgtt attttccatt aggggatgag tccatattcc
      721 tacatgtggg caaatactca agcacataaa atatcagacg tcacaactca ttaaaatcaa
      781 cagagcatac attgctgtat atatcctata aaataagttt aactggaaag ataagtctag
      841 taataatgtc acattcccaa agcccacaca ttaatttgga tctgtctgat ctaatgccta
      901 gggaatttat gtatgggatt actcttacac ttctgtatga gaaaaagatg gctctctgga
      961 caatcaaatc tttaaaaa
//
LOCUS       KCLA01002709             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44059upu ultra-conserved element locus uce-5011,
            sequence.
ACCESSION   KCLA01002709
VERSION     KCLA01002709.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44059upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-5011"
BASE COUNT          194 a          152 c          133 g          177 t
ORIGIN      
        1 ttttttcagc acagcttgag ccctgaagct tttattaaaa aaatagaaaa gggaccccaa
       61 accaagcagt gtacaaaagt ggggggagaa gagaaggttt aacaagctcc aagtcataga
      121 ttataagccg ctgctaaaaa tttatggctc tttggatctt tgccacactg aacagattgg
      181 caagctgatc agaatcgcag caggctgcct aatgagtccc acacaatttt tcaccccata
      241 tttttccaat aaaaaagcag ttaaatacca accgcagcca cagcagagcc tgccatctgg
      301 ctgctttttt ctccagccat cattaaaatg gttcttggca gtttacacct cgcttttttc
      361 tgtacagatg tggaacgaat tttctgacaa cccttggatg aaacaggggg ctttattgag
      421 ctttacagat taactgccta acttctggtc ctaattttaa gtgtctttgc acaccggagt
      481 catcatttta agtgagctaa ttgcacagat ctgagcccac cagcaacatt tgcttcactc
      541 ccagtgagat tcagcattgc aaggagctga gtaacccaca tcgacgtggc caccagtgtc
      601 cgggccatgc tgtgagttct cagggattaa aaataataac taactataag gtcagc
//
LOCUS       KCLA01002710             937 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44074upu ultra-conserved element locus uce-1606,
            sequence.
ACCESSION   KCLA01002710
VERSION     KCLA01002710.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44074upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>937
                     /note="ultra-conserved element locus uce-1606"
BASE COUNT          309 a          187 c          185 g          256 t
ORIGIN      
        1 actcggaaag aatctagtgt cgcattccaa agaatgtcag attaaactaa catgtgccag
       61 tcaatattgg tacactgtga cccttgatgc ctcctaagca aaactattaa gtccaacatt
      121 ttctcctgta agcacttatc tgtaaggatg gctaacatgt cctctgaagc agatattgaa
      181 actgattgga caataggtag ataccagaca ggggcctggg ggccgacctc tagaaatagg
      241 gggagaaaat cttaatctgc aacacaatgc agctctcttg aaaccctatc attttcactt
      301 cccatgtgtc tgctgcctga ctgtgaatgg atttgaaaag gaatggttag tgctgaaaat
      361 tggatcagag ctaacattct ctcattttta tcagcagctg ccaaaggtca tctgacataa
      421 tagctgatga attcaagccc agtggatttc atttgcaatt ttcaatttac tgaggcctcc
      481 aaaccccaca gtgataaaag cttcccctat cgtggcctgt cacaaacatc aagaaactgc
      541 acaaacccac aagaaagaaa taggagaaag ctgtgcatca tcgcagttac agataaggag
      601 aacaggaaga aacagtatcg tgtagaaagg tgtggagcgg tatgtgtggt tgagtttcta
      661 aatgccaatt gtaatgaaaa aactatgaag agcaatcaaa taacttctgc agaataatat
      721 catggttccc ctccccccct tcagtttgaa aattgccttc taatctcttg cttgacatcc
      781 tgaagataaa agtgaaagtg aaaaaaccct gcttatttag acatggaagc attgtacagt
      841 tgatctattt actgtagttt tgatttacaa attcatgcta ttaagaggcc tattatcaga
      901 gaaacagtat gtcagcacaa aataagaaat tcatttg
//
LOCUS       KCLA01002711             737 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44088upu ultra-conserved element locus uce-7620,
            sequence.
ACCESSION   KCLA01002711
VERSION     KCLA01002711.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 737)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..737
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44088upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>737
                     /note="ultra-conserved element locus uce-7620"
BASE COUNT          241 a          127 c          149 g          220 t
ORIGIN      
        1 agaatgggga atggaaaaga gagaaaacaa gctttttgaa ccctgtaatg taaatttgca
       61 gacaattatt cattattaac tgcctgaagc atcacacctc tctcaccttt gctggaatgt
      121 ctgaacatta gggtaaacaa cacactgctg tcttatcata atgcggtctg cttcactgca
      181 gcaagaactt gtcagaaaca gattgtgatg ttgacttctc aataggggaa aaaaagggcc
      241 taaattagac ttctataaaa agaatattgc atatttattt ccacaataac accaaggaaa
      301 aatgttagtc aagaagcaag caattgggtg aataaataag cttgtctttg ttctcatcaa
      361 ttaagttatt acatcagttg gaaaaccagt gaattataat acagatgttt aatgaaacac
      421 tgctgtgcct ataagtcaaa ctcctatttt gtggtgtgat tttggctgca tagttttgtg
      481 tgtgttaaac cgtatttatt agctgatacc cattattatt ttgagcaagg tataattcag
      541 ttgtcaggct ccagctctgg gaaggagatt taatcagtga gagcccgctt tgctgctgag
      601 cataaaacaa tgcgggtttc atgaagcaat cacaccagtg tgaaaaaatg ggattaatta
      661 gtattgtaca agaacaggca gcatgctcat taaaaccttg tgagctgcct cttgataaac
      721 tgccacttga tagggcc
//
LOCUS       KCLA01002712             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44103upu ultra-conserved element locus uce-5880,
            sequence.
ACCESSION   KCLA01002712
VERSION     KCLA01002712.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44103upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-5880"
BASE COUNT          274 a          151 c          156 g          235 t
ORIGIN      
        1 agggcatttc tttaaggaaa tatttatatg tttaggtctg ttgaccattt acaccattat
       61 ttaaaggggt cacagaaaag ggcagtggtt attaaagcag agagaacaag gaaaagcagg
      121 agagagacag agggagcgtg aggtaagaaa ctcataatag gatttttcat gtggaacaat
      181 cattttatct aatacgtctg aaaatgtaat ccattacgac taattaccat gctggcattg
      241 aaatacagga tcacacttcc tcctgatcca gacaggggcc caagtctttc cactcattgt
      301 tctttccatc ccacctcacc tccctccctt tctgcttctc caagaagaaa ttcagccctt
      361 cggacattag tgaagaaggg cctgaggtct ccctatcgtc ctaaagcaga agctaaacaa
      421 tattagccaa tcatttttga tagatgaagc atggaaatta gttccagagt ttaactgata
      481 actgaaacca cacagttaca ttccattatg gcaggcttaa ttgatgagct cattaagccc
      541 attattagag aaattgattt caaataggca cttaaaacag gctggtaaaa gaaaaaggtg
      601 aagagatacc gtacaatgtg aagaaagtaa ctaaaataca taatgaagca agtaatttta
      661 taggtttgtt taatgaaagc ctcaagagca tattagttgc tgtgtggatt ttaaacactc
      721 attttatgta ctaataaagc tcacgtccat tatgggagtt ctgagtgcct ccaatcttta
      781 atgcagcttt gctactaatt aattaattaa cctcag
//
LOCUS       KCLA01002713             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44118upu ultra-conserved element locus uce-914,
            sequence.
ACCESSION   KCLA01002713
VERSION     KCLA01002713.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44118upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-914"
BASE COUNT          201 a           87 c          111 g          169 t
ORIGIN      
        1 aaaaaaaaga cagatatagc atcttcaagc tcttggcatc ccttacgaga aaaaattggt
       61 tctaagggtc tctgatcttg tgttttagta aaatagaact gcacggctga ctgacagttc
      121 tgatctaaag catttacgtt taagttttga tctctctgct tttgattaaa actaatgagc
      181 tcatttaatt caaaatggga atctctgata agagaaataa ggttgatgtg attggattag
      241 aggggcaaat taaactctta gagcagaagt ttgtgcttat atagtgtatt aaaaagctgt
      301 tggcgtatta tggcgtgtta gatgatgaga aaaatttcat agtaattcat atttaatcag
      361 aagaaatgaa agtactaaat ataacatggc tctgcttttc cctcgagtga taaagagctg
      421 tacatttaaa atgacatcga attcatgcgc tctaaaacaa aaaaatctta agagagacgc
      481 tcaggcaagg gacactgttg tcacttattt catcacaata aggctgaaat gtcacaaaca
      541 caaggcaacg tgaccacgtt aaatcaag
//
LOCUS       KCLA01002714             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44133upu ultra-conserved element locus uce-1820,
            sequence.
ACCESSION   KCLA01002714
VERSION     KCLA01002714.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44133upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-1820"
BASE COUNT          235 a          108 c          144 g          227 t
ORIGIN      
        1 cttgcatcct ttgaagagat gatagacatg ttgcagaagc tttcttaaaa catttaccgt
       61 tttactgtac tgcaaatgta aggaaaaaga atgacaggag aacaaggaag taaacaagat
      121 caaacacatt tttaaaagct gttaccattt gtctctcagt ttaaaataca cttcttacta
      181 ctacacagag tggacagaat aatggagagt aagagtataa cctttctatc taaggtcaaa
      241 taattgtgat ttctacagtt gatgaaagtt taatatcctg tttcattaaa aattctcaga
      301 acattgaaca taagtcaaca ttccatggag aagaaggtat tatgcagctt gcatgtgtgc
      361 atatctgcat atcagagcac aaaatattga catgataatt gcagtcaagc ctgattgaac
      421 agtggcctct gggaattcag ctggtgttgt accaactgga tggctgctca ggacacagtt
      481 tgaaatgcaa ggtgcaagtt agcactttat tcagcacagg caggcatcat tttaaaatcc
      541 ttggggaaaa ccctggtgat gtgcagatgt taaagcagtc tgttctgaag tgctgatatt
      601 ttgaatgctg taagagtctt gtatatttta aatgaaaaat gtttgtgaaa ttattaggga
      661 aaaatgtcac tttttttttt actactctag tgtagaagtc tgtttagtgt ttta
//
LOCUS       KCLA01002715             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44149upu ultra-conserved element locus uce-5912,
            sequence.
ACCESSION   KCLA01002715
VERSION     KCLA01002715.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44149upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-5912"
BASE COUNT          169 a          103 c          103 g          155 t
ORIGIN      
        1 ggtgtgtttt catgttggca aataaactca atgtttaaga aggtagtatc gtgtgtcagt
       61 cacttgtgag gaaaaaaaag accttgtgta cttctagtaa tgaaaatgtc taggccttgc
      121 agctcttttt aacacttagt ctttttctat tcttttcttc aatacaactg cagctggaac
      181 agcaccacca aacttttcac aacgactaca gagcatgact gcaaggcagg gaagtcaagt
      241 tcgatttgac gtgagagtga ctggaatccc tacacctgtg gtgaagttct atcgggatgg
      301 agtagaaatc caaagctccc ccgattttca aattttacaa gaaggagacc tttacagcct
      361 aataattgca gaagcatacc ctgaagactc cggtacctat tcagtaaatg cgacaaataa
      421 tgtgggacgt gctacttcaa cagctgaatt gctaattcaa ggtaagaaat aaacatattc
      481 attctttcag tagtaaaatg tgcatcactt catcaaagtt atattcaata
//
LOCUS       KCLA01002716             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44165upu ultra-conserved element locus uce-1438,
            sequence.
ACCESSION   KCLA01002716
VERSION     KCLA01002716.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44165upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-1438"
BASE COUNT          262 a          109 c          151 g          300 t
ORIGIN      
        1 ggtcagacac atttctctga gttactaatg agaggaaccc attgaacaat cctagcgagg
       61 ttaatctgag acttttaata ttctgttgtt cactcctttg aattcagttc taaaggaatt
      121 ctggtacgtg gtgaagcagt aaatgaaaga attgtttttt tgttgtgctt acaaacgtat
      181 ggacttacta tcatatgggc tcaagtccag caaagtagtg tgaaggtgca tgacttcaaa
      241 catgttttca ttattttgct ggatcagcat tgtgatttca acgttattta atactgcctc
      301 atagtaaaac aatttttaaa ctggcaatta agaaagctgt taattttagt ataatttatc
      361 tgttagatta gggaggcctt acagactgac ttcacttaaa gaggatgtgt cacttattgt
      421 cagtgtggta tggactttat ttgcttaaat accttcattt gtaaagtatg tctcacttga
      481 aattgctttg tatacatttt gtaaaaatat ttataaaatg ttttgtaaaa aaaaagtata
      541 acaaattgca gtttattttg ttatgttgga taaatactgt taaacgacac aagtaagtaa
      601 atatattgtt aatccatgga taggaaatgt ttagttggag atgacaaatt gaaacaacca
      661 ttgcaataca gccaaagatt tgggaacaaa tatcatctgt gattgtcttg atttaaccat
      721 gttgagtatt tatgtttcca aaagaggatt gttctcagtt ttaagttacg tggttataga
      781 atattcttac tccagtgctt tttgtaacaa agttaaagtc tt
//
LOCUS       KCLA01002717             459 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44180upu ultra-conserved element locus uce-915,
            sequence.
ACCESSION   KCLA01002717
VERSION     KCLA01002717.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 459)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..459
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44180upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>459
                     /note="ultra-conserved element locus uce-915"
BASE COUNT          158 a           80 c           84 g          137 t
ORIGIN      
        1 aagttttgag cccatgtgct caatagatac cagcaccttc attttttaaa tgagtctact
       61 gctatttccc ttttactgtt gtataaacag ggaattgaag ggtaaaagag ttaaaactta
      121 atgctatagt gctaatgtgg cttttaaatc acgtcagcag caatcactgc attataatta
      181 acaatctatt gaaccagcaa taaaatgaac atcacattac ttcttaaagc agcagaataa
      241 aatggctaat aaatagcata agccagacaa attgcagagt aatagaaatt ttcttaagat
      301 ttatagtgtg cagaaagacg gatgtgctat tagtaggagc tccgatactt gacaaaattc
      361 ttccgcgaag acatagttac cgggcatgtc agagttcacg agtctaagtg gtttatccga
      421 atttcagctc gctgctatta cagtggaaaa tactcatta
//
LOCUS       KCLA01002718             753 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44196upu ultra-conserved element locus uce-4872,
            sequence.
ACCESSION   KCLA01002718
VERSION     KCLA01002718.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 753)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..753
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44196upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>753
                     /note="ultra-conserved element locus uce-4872"
BASE COUNT          212 a          147 c          137 g          257 t
ORIGIN      
        1 aaaaagctat acttcttatt ttgccaatga atctgttgca ctttgcaatg tttaagtggg
       61 cttatacaac ataaacattt gggacattta acatatcaag ctcaaataaa aatgacacgc
      121 agatcattca cttctgaagc tgccttgtgt tcagttattg gaacactcca tccctgtggt
      181 ttccgaaata ttataagtat atattccaga ttaaactttc tattttcctc aaggtagtgt
      241 tgcttttcag ccctcaatac cttggttttt gcctaaagaa tcaggtccta tcagcaaaat
      301 caaaggcgat tacacagctc agtagtcatt taggatttct gtggctcaat taagcatgta
      361 tagcatgcca cagccactga gactctgttt attcagtgaa agtgctctgt aatttattta
      421 aaataatcca tctttaacaa ataaagaggc cattgactgg ccatcgctgc aggcatccat
      481 ttaaatgctg ccttcttgat ggtctgtttt gctggtttaa gttaaatacc tgacaaaagt
      541 gattcagttt tttggcaata agatttgtac gcatgatgtt tattttcttt tacaccggta
      601 gtcagttaga acctctttgt agcagagcga ccattgcaaa tgattaatgc tattcactct
      661 gataatagta gatcatgact gtcatcttgc tgcatgacgc gtgttcgaga ctgctcagga
      721 attgtgtcct ggtgacactt tgctactcag gtt
//
LOCUS       KCLA01002719             949 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44210upu ultra-conserved element locus uce-301,
            sequence.
ACCESSION   KCLA01002719
VERSION     KCLA01002719.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 949)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 949)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44210upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>949
                     /note="ultra-conserved element locus uce-301"
BASE COUNT          292 a          149 c          166 g          342 t
ORIGIN      
        1 aaatcagatt aaatacgtta cttttgtcag tcatagtctt ctagaaactg atagtaaaat
       61 gttttcgtta gatattcttc aaattcttca tatgcttttc tacttcatac taaatacctt
      121 taagctgctg gtagctgcaa atcttgtatg tgagaatacg agataactac ttttctccat
      181 cagtgaaggc atgtttgcat ttttgtttaa taacaacttt gatccttcta ctgttggcaa
      241 tggtcattga gaaatcctga cataaagaag gtatctgcaa gataaagttc tgcaagggat
      301 gattagcagc acttaagttt tctttttgtt gaaaggaaga atccctgatt gaacagtgca
      361 ttgaatgata tgacaagcaa gtacttgatc cctgtccagc tggaaaggaa ttgtattcat
      421 cagcagcttt ttagctaagg atgtctttat attttcattc tttgtttgag tctctccaga
      481 tcctcccttt acttcatgtc agcactatat agtaggtatg ccaagtggtt ttgaaattta
      541 aattacagtc tctttttcag atgttattgg aaagaacatg taatttataa ccacgtgtta
      601 ggagtacagg atgttcatgg ttcactgcca attcttcttt tgtaaagtta ataaaacttt
      661 cataaaacac ttatacactt gtatatttca tggtaaagat ttttttatct cataggctaa
      721 tgtaaagatt tattaaaaac atttttttgt taagaggagt gtcaatagtt tgcagctgag
      781 tgtaattttg aattcccagt agatgacagt ctgactgaaa atgacactaa cagctttgtt
      841 gatttagcac taaaaataaa ggattctttc aagtgatata aagctctaat accctgagta
      901 tgctgaaaca cacttgagac ccttaagtag agtttcagtg aaatgttcg
//
LOCUS       KCLA01002720             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44226upu ultra-conserved element locus uce-2414,
            sequence.
ACCESSION   KCLA01002720
VERSION     KCLA01002720.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44226upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-2414"
BASE COUNT          127 a           54 c           64 g          119 t
ORIGIN      
        1 gatttttgaa ggttgctcat tttacttatc cacccaaagt caatttgagt atgaatgccg
       61 aatgttttac tcacaatagc aaacaacttc agagaagaaa catttattct ggaagcagag
      121 attcaaacca gacagcaatg atgcattaca aatatataat tatttgcact aatatttgag
      181 caggtggaat ggattagtac atggtcaaca ttgcgctgct gataacacgt atttttctat
      241 attaatatgt actgtgcaac atgtattaaa attgtcaata attcatttta gcagagatag
      301 caatatttat attgctgtat tctacagaca gcagagtgaa ttgttaaaat gtgtaaagcc
      361 aggt
//
LOCUS       KCLA01002721             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44241upu ultra-conserved element locus uce-7045,
            sequence.
ACCESSION   KCLA01002721
VERSION     KCLA01002721.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44241upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-7045"
BASE COUNT          175 a          112 c           89 g          136 t
ORIGIN      
        1 acaataaaag acaaacccca gacagttaca agttcttata attatacagt tcaaaaacat
       61 ccacaatgtt attcattggc tgctaacact acctggacag agggcagtgt tattgcaaac
      121 ccttgattct cttaaagggc cgctgcagtg tgtcccataa ggtgatacac aagttctggt
      181 tcgcacctgc gacccttgac cacaagtaac tgaacacgta ctccactggg cccactcttc
      241 aacaccagat tcacctgtat tcaagacaac aagcaaagat gaatatagac ataagtatta
      301 atataacatc tttttctttt tttctcattg tctgctctta gaaaccaaag aaaaatgtac
      361 cacatcaaaa gaaatattga cgaggtcatg gagtaaagca gctgtgaaaa tgtgtattga
      421 atagaaaata aaaccaccta cgatgctgca gtcacacaat gcctgtcaga gggcaacact
      481 ttgatagctt ggcatattta catgtttatg ag
//
LOCUS       KCLA01002722             682 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44256upu ultra-conserved element locus uce-4020,
            sequence.
ACCESSION   KCLA01002722
VERSION     KCLA01002722.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 682)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..682
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44256upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>682
                     /note="ultra-conserved element locus uce-4020"
BASE COUNT          226 a          140 c          152 g          164 t
ORIGIN      
        1 tagggtagct gtgtgctctg gatctgccag ccttgctgct ctaagcctac tctgtgctca
       61 cacagaacag acataggacc ctgacaaaaa ttggcaggca agctttagat gctgagtgac
      121 acatactgat gcacggagtc aaagatgtca tcatcatgca agctccacta gttatgagct
      181 tgagagaaaa atgaaacacc ccctgcaaaa taaagcaaaa caaaaaaaag ggaagggagg
      241 ggtgagagtg gagcaagacc tccagaaaat aaacagggtg tacagtttca aaggctacag
      301 acacagacat ttcattgttc aagccaatta tcagtggaaa ataataacaa cagatggatt
      361 cagagtcact gacttttcat atgcacttca tctctgcaca acagatgatg aaacgcgaga
      421 gctatctcgg aaaggcaaaa catctttcag taaaagaact ctatactcca gatggggacc
      481 ttctaaggca gctgattatc ttcttataat gttgtaagat agacttacta aacatttcaa
      541 gaactgatca gataggatga gcacaatggc atcattatga ggagtgagtt gctttggctt
      601 cagaccggtg actaaactag gcagattttc cagggccaga gctgcctgtt acttcatttt
      661 gaatcgagca gtgattcccc at
//
LOCUS       KCLA01002723             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44272upu ultra-conserved element locus uce-1265,
            sequence.
ACCESSION   KCLA01002723
VERSION     KCLA01002723.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-1265"
BASE COUNT          169 a           89 c           80 g          151 t
ORIGIN      
        1 aagaatcctc aaaatttaac ttgtcttcca agcatatttg atcacattta catttagtgt
       61 ccaaaacaag ttgattggta acatcagtgc cagcactacg tcatacagcg acttcatggt
      121 atttgacagt tcgtctaagt ctccgttcca ccaaaaatta caaaaggttc tacagagctt
      181 tccttagcaa gctgaagctt actagtcatt tgtggatgca cataaaagct gcttatagca
      241 cagctatggc gtaagctatt ttctaagcaa taaatggttc aagtcatcta ttttgtcctg
      301 aaatgctacc tgtagttaca gcattgctta taaatggtca tagtaaattt agcatcaaag
      361 agaatattac agaaaaagac agcagcagaa gcattagcat tatctagtat ttatatatgt
      421 tatcaacata acacagcagt aaaagtttta aatgcatatt aatgggtacc gtgtctaaaa
      481 attactgaa
//
LOCUS       KCLA01002724             938 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44287upu ultra-conserved element locus uce-2120,
            sequence.
ACCESSION   KCLA01002724
VERSION     KCLA01002724.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 938)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..938
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44287upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>938
                     /note="ultra-conserved element locus uce-2120"
BASE COUNT          301 a          159 c          187 g          291 t
ORIGIN      
        1 aaaacgatgc tcagcccctc tagtgtacta cagtgatgaa tgttagaagt gcaactttgg
       61 aagcaagaat caagaaaatt agtaacagtt ggagaattag catgtaaatc aataatatcc
      121 tttctcttgc atcttgaaaa ctgaggatat acatcacacg ctgcataatg aaagagaggg
      181 cagaagttag aattgtaacc tctttgcatt actaggtctg cttttactga agaactgttt
      241 aaaataattt caaacattag agtaaatctc tagtaaatat ttaaactacg tataactagt
      301 cacaaataaa ttaagctgat tttatgcatt ctctctaatt agaagggcac agcatttgtt
      361 gaaacgtgat tagtattatt cattaagcaa aaaattctca tttgtatctt attatcacta
      421 ttctgcataa accaacacaa tttgtcatga actccctcat ttgctgtatc ctcaaaaagc
      481 agattatgct tatttttcat ttggacagtg gaaaatcaag ccaggtgttt ggcagcacca
      541 gagtgttcag gtgtaactgt gccagtgatg gtacattact agcagcatgg atgaagaatg
      601 aggcatggag aatcttggga ctgaagtgcc tcgaggccca tccctttaga gtggtcctgc
      661 tgatgagaca ggtggtgttg tataggacta acaaaaaaat gagaaacttt tttgtaaagt
      721 cagcctttcc ccttcaagtg gaaatgagaa gtgctcttac atatctgttg tgcactgaaa
      781 tgtctggacg tatttgaagt ctctgcagtt aatacatttg tcttaaagtt ttccaaagct
      841 ggaaaatacc agttggtgca aagaagtgtc tgtcactccc tgttaggaat tggtacaata
      901 ttgcacatgc agtcaattgt gcataaatgt gtatctgt
//
LOCUS       KCLA01002725             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44303upu ultra-conserved element locus uce-4940,
            sequence.
ACCESSION   KCLA01002725
VERSION     KCLA01002725.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44303upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-4940"
BASE COUNT          174 a           91 c          105 g          189 t
ORIGIN      
        1 tgttcccatt aagcaagact ggtttccaaa gcttaagaaa agttttgatt tctcttgtgc
       61 actttatgat tttcactttg ggtctttctc tctttcagcc acagaagagg tgagaggatt
      121 caccctgtat gctggagtca gtggctgcca atacattaca ctttaaatcc ctgttaatat
      181 tctgcttaga cacactgtaa aggaagaatg gatatccaga ataattaaaa tatgtttaat
      241 ttgcatggag ctcagggcat tgttctgaca tcaaacatca ctgtcaacca tatgtggaat
      301 ttcaactgcc aagtgcttca tttatgtgaa aattagctta agtgtacaaa gaatgaaaaa
      361 tttatgatta tttcacattt taataaatgc agtgctatgc attaatttag acttctaaaa
      421 caattttgac agtgacaagg gaattcttcg cagactaagt gctgtagtgt gctgtgcttc
      481 acatatcctg aggaatagtg tggtagagtg ttaaggcagt tagatttcta tgtttttaaa
      541 caaagacatt atataacta
//
LOCUS       KCLA01002726             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44318upu ultra-conserved element locus uce-576,
            sequence.
ACCESSION   KCLA01002726
VERSION     KCLA01002726.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44318upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-576"
BASE COUNT          235 a          159 c          149 g          171 t
ORIGIN      
        1 agtgtcaacc tcccagacct ggacacaaca tgccaaagtc tcctctaaca ctagaagtcc
       61 actgagttcc tccacaccta ccctacgttc cagcactgtg aaacctgagc aactacccaa
      121 agccagcagt aaaaaaggaa ggaaaggagc agtgtgtaga ggcatacaag agcgagctac
      181 tggaatatgc atgagctcca aacttcaaga aagagtaaat taatgaaggt agttcacagt
      241 ttaaaagtaa ttatttttgc atttcctttt ctccgaggtt cttcttccat cttccacctc
      301 caaacggggc tgggattatt tagcaaccaa gtacattaga aggaaggcct atagcaacct
      361 cagtcagcgg tgaaatttgt tgtctccctc tgatcctcag attatggaga tgaggggatg
      421 aatgtacatc agtaagattc cccaccgaga tagcttttca ctcttttcag taagaaagag
      481 atcaaaggga agagagctaa ttaccatacc aaaggagaca aaacccctag agctttatcg
      541 ttgttgcaat ccaataataa acagccaagt acaaaaaaga ttatttgata gtgacacccg
      601 gaattgaaag cctttgaaat gtcagcttct cgaaaaatga ttttctgaag ggggaaatat
      661 ccataattat agagaagaat gctccagcat cggggagccg cgcgcagctc ctgg
//
LOCUS       KCLA01002727             253 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44333upu ultra-conserved element locus uce-1017,
            sequence.
ACCESSION   KCLA01002727
VERSION     KCLA01002727.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 253)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 253)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..253
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44333upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>253
                     /note="ultra-conserved element locus uce-1017"
BASE COUNT           71 a           71 c           57 g           54 t
ORIGIN      
        1 tccggggctg gaaaggcgag tgtaaaagtt tatgagctca tcaggattgt tgtaccatta
       61 catcagaggc aattataaat ggccaagagc aggagatgcg gagccaatca gatcccagat
      121 aggatgtcaa cctaagacca actgtctcct ggctttgaca gaaggatttt acctccataa
      181 ttcaaatccc aaaccaaagc gatccgcact cgctgctccc atcgcccagc tcctcaccgg
      241 cgctcccggc cat
//
LOCUS       KCLA01002728             510 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44348upu ultra-conserved element locus uce-5619,
            sequence.
ACCESSION   KCLA01002728
VERSION     KCLA01002728.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 510)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..510
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44348upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>510
                     /note="ultra-conserved element locus uce-5619"
BASE COUNT          174 a           99 c           88 g          149 t
ORIGIN      
        1 acaaaccact aagtagtagt atctacagag aggaaataaa aacagattta acctccatac
       61 ctttagttaa cttcttccca aagtaaatag aaaatgttac ttcatcttgc ttaaattaaa
      121 aggggagagg ggaaactccc catattacca cacattccca tattgagaat ctcttgtata
      181 taaaaagaag agtctgcata taaaagacaa tccagagaca tctttgaagg ttctctttca
      241 aagcatccct acttccctga gcatctaggg atttctgtta ttaattgaag ttaattttct
      301 agcatatcag tttgccatgc acgtgggaaa gattgatagc ctcttcgatt ctcaagagtg
      361 ttgaaaatga cactgttcca tcactgagtg tcttcacttt tatcatcaca aatcaaatta
      421 taaacatcgg ggcaaccttg ctggaatctg gcttcgggag atttccataa gattaattag
      481 gcggccaaag caaagatggt aaaatctaag
//
LOCUS       KCLA01002729             243 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44363upu ultra-conserved element locus uce-6362,
            sequence.
ACCESSION   KCLA01002729
VERSION     KCLA01002729.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 243)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 243)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44363upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>243
                     /note="ultra-conserved element locus uce-6362"
BASE COUNT           52 a           52 c           53 g           86 t
ORIGIN      
        1 gactgcttca tcctatttgg tggagcagct tgactttttt tccctggctt ttggtgatgg
       61 ttgtgagtgc agaagttgat tgacagatgc atgccagaaa cccccattct ccttttcaaa
      121 gactacatat gatggattgc gatcttgcag ctcagcagga cacagggacc atgcaagctg
      181 taattggtca ggtatggagt cagccatttc tcaactcccc ttttattttt ttcatttttt
      241 ttt
//
LOCUS       KCLA01002730             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44379upu ultra-conserved element locus uce-3191,
            sequence.
ACCESSION   KCLA01002730
VERSION     KCLA01002730.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44379upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-3191"
BASE COUNT          267 a          153 c          177 g          294 t
ORIGIN      
        1 attattgctg ttaatagtac cataggcttc tggtgtagga tatggcaaat ttactctcat
       61 tgatcctatg agaaggttac acagcttcct tttaactgaa ggactttttg gtcagggctc
      121 aagtgagggg atctttagaa ggagactgtc atcagcatac ggtagagagt ttgcctgccc
      181 tgcttggaga aagcctttac ctgggttatt atttccttag tgaggctgca taaaacttct
      241 gttgcattta attcaaccca aaacaattcc tatatttcat gtcatgggta ggaatgaaaa
      301 tggagatagt tcatcaatgc tgctctgtga tataaaaaga gctgagaagc caagggtatg
      361 agagtgcata aaaatgtttt gtgtcctgac cagtacattg cttaaaaaaa attttacaat
      421 cagccccgat tgttcattcc tcccatgcag aagatactca catattcatt tttaaaaggg
      481 caaatcaacc ataattcagt ttataaactg tgaagctggt tgcgaatgtc tggatgaata
      541 ttcattagaa tctcttaatc tgccatcgat ggtgattcat taggcatatg taaatatcac
      601 tcactttaat tgcccctaaa ctgacttaac ataatattgt cattagcaaa ttattagtta
      661 tttgtgtaac taatggtacc ttatgatgta catgttaaat cgccaaatat acggttgcaa
      721 ttataaggat gttttatgtt gggtgctttg taaactattt gatgaaatat aatggagcca
      781 aatcaaatct gggatgttca taggacagtc gtggaatttt actatgatat ttctacacct
      841 tggtgactgc tggactatgt gagactttgc cccaccccat gtttcaacgg a
//
LOCUS       KCLA01002731             528 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44395upu ultra-conserved element locus uce-2328,
            sequence.
ACCESSION   KCLA01002731
VERSION     KCLA01002731.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 528)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..528
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44395upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>528
                     /note="ultra-conserved element locus uce-2328"
BASE COUNT          131 a          134 c          135 g          128 t
ORIGIN      
        1 cccggagccc ctttcatgct tgcgggatgc tgggacggca gcggtgcgtg tgcttgtgcg
       61 gagcgaaccg cctgcaagcg gttgccttgg cagaaaggtg cagctttctg atgttctttt
      121 gtctgataac taattcaagt taatgcgatc tttatgtaaa gctaacagcg gataattgtc
      181 tattttctcg ccaacaatct ccatcacaat cacttatctg gaaacccgcg gttgtattaa
      241 tcgttatatt ccccgagata agcgtctccc gaattatcag taaacattgg agggaaatta
      301 aacaaactcc agagccactt aagtttcctc gacaggtttt aacccgcttc tcggcgtggg
      361 ggtgggaaac ccaaaccaac ctgggacaag agcacgagat gtacgtgtct gtgtgtgaga
      421 aacggtggag aagggcccga aggtcgagat aattttgaag agcccaaaat ctcctcgcgg
      481 tgcccatgct acaggcacaa gctctcacct cacgccccgc acgccggg
//
LOCUS       KCLA01002732             455 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44411upu ultra-conserved element locus uce-264,
            sequence.
ACCESSION   KCLA01002732
VERSION     KCLA01002732.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 455)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..455
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44411upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>455
                     /note="ultra-conserved element locus uce-264"
BASE COUNT          124 a           80 c          105 g          146 t
ORIGIN      
        1 cttttattat ttgtgtcatt ttgttccctc agacttacaa ggataaaact cgcactcctg
       61 gaggtgccag gcatttcaaa tcttgaattt aggaggagcc gtgttgcttt ttgcgtctgt
      121 ttgtctgtcc atctgtctgc gggtctataa taagctgtgc agggagacag cagcttacta
      181 tctgtgtgtg tgaaattagc taattggtgt tagcagcaat attttcacat gttttataag
      241 caaagtgcag caaggtatat aaatgtagat atgatccaga gacacgcgcg cgcgcacaca
      301 cacaatcctg tcgctgctca tgcatagacg ctcagaagta attaatgtta ataagatttt
      361 aatgtgcttg tgagatcata atgaggagaa atgaatgctc tgattagaaa aaggtaactg
      421 tgtgtgtgtt ttggcttaga acaagatttc cctgc
//
LOCUS       KCLA01002733             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44427upu ultra-conserved element locus uce-3228,
            sequence.
ACCESSION   KCLA01002733
VERSION     KCLA01002733.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44427upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-3228"
BASE COUNT          206 a          184 c          157 g          237 t
ORIGIN      
        1 cactagcctt cttagggctc attgctgtgt cctggtcatc ctgctggcca ccaggcccta
       61 ggtcatttcc tacagtactc tccagcagat cagtcactat tccagagacc catgcagtta
      121 tcctatgctc tggtctcaag aaacttcatc ccagactgag agaaaaatat gtgttcacct
      181 ttacttggac tctctggcct ggatttgtgg ttgtttgtgc ctgccttaca aataaagagt
      241 ttctggtgca gcaacctgca catgacgtct ccctaataaa ttcacatgac agtcatgaaa
      301 cgctcctata atcagtgaca tgggatgatt ttccgctcct gacaagccct tgtattgagt
      361 atgataacag ttactttgtc ttcatccact gctggagtat aatatcaatc cgtttgatga
      421 tccagcaaac gaagcccaac acttctgtat caatcttcat agagtgctgc ctgttgtcta
      481 acaaaaagcc tgaaatgaga tcattcaatc actttgctgg ccagggcagg cttctcttac
      541 tgaagtggtt ttaactccct gtcactattc ttctgtttcc tttacacgat gaagctgggg
      601 ttctgatggc aatcgaaata ctcatatccc ttcataattt tagagcaact ttgcaaggca
      661 gacaagggag agaaaaagcg tcaagggaga tctctgctct gacatttgct aaagaaatgg
      721 gattttctat gaattgagaa gactctggta gtcatttatt tcacaggtat ttcacaggga
      781 tcca
//
LOCUS       KCLA01002734             204 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44443upu ultra-conserved element locus uce-220,
            sequence.
ACCESSION   KCLA01002734
VERSION     KCLA01002734.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 204)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 204)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..204
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44443upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>204
                     /note="ultra-conserved element locus uce-220"
BASE COUNT           66 a           50 c           39 g           49 t
ORIGIN      
        1 gggaagacgg aaaggaaccc aaaccctagt taaataaatt gttcctttat tccttccctt
       61 ctccgcgccg ggatccacgc gcggtcgtta attataaaga gactattaca gcaccatatt
      121 ttcattcaag acgccgtccc ggtatatatc agagaagccc cataattaaa gcagaagggc
      181 cgcgatgaca attaaaatta caat
//
LOCUS       KCLA01002735             940 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44459upu ultra-conserved element locus uce-7242,
            sequence.
ACCESSION   KCLA01002735
VERSION     KCLA01002735.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 940)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..940
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44459upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>940
                     /note="ultra-conserved element locus uce-7242"
BASE COUNT          324 a          172 c          165 g          279 t
ORIGIN      
        1 gcttaacagt aaagcttgac ccaaggaaca tcaccaaact agcatccagg aatgtaaaat
       61 caaacattaa acttacaaga aaatccatat tcattctggg ttctctgttc agttgaaata
      121 ggataaatga aaccttaaaa agaaagaaat gaaacaaaaa tgggaacaaa atcaaattaa
      181 tgaagagaac aaaaaaggga agcatgaaaa atggtttaat taaaaaagag aaaagaaaag
      241 aaactgatgg cactttaaaa ttctgataca gcacagaatt atgattttgc atctcctgtc
      301 tcctccagag ccttagtaag aattaataag cagccagatt gaatttctaa gccaaaattg
      361 gtctcgtgtc actaactttg gagtgcttaa agtctttctt ttattgagca taaactctaa
      421 tggatctaat ttatttccaa catcaagggt cattagcata tggaaagtct ttttcactat
      481 ccctgccata tgctttaatt cccaggacac gtttggtgag gctctaaaca ggtttttttt
      541 ttaattatag tagcttgctg ttgatctaat agagctaaac aagacctgtt gttgcaggtc
      601 agaggttaaa tacccattcg ctgaacacaa tccctgcaca aagccctctc tccatatttt
      661 cttggaatta ttttatcctg cctttaataa gtgttcagta ggaattcctc ggggagcaaa
      721 gaatttgtca gcaagcggga aactgagtgg cttctcttca aaatcattac aaaatcaata
      781 aggcccctgg ggtcataacg ttatttattt gaaatctttg caagcactgt atatcgacaa
      841 aatcataaca tgctttacag ctgtattttg aaatgggtaa gtaagaaaga tcatttcctt
      901 tgtcttttcc tgctgcagct cctaaggatg gcacactgca
//
LOCUS       KCLA01002736             929 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44474upu ultra-conserved element locus uce-1946,
            sequence.
ACCESSION   KCLA01002736
VERSION     KCLA01002736.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 929)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..929
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44474upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>929
                     /note="ultra-conserved element locus uce-1946"
BASE COUNT          245 a          189 c          184 g          311 t
ORIGIN      
        1 ttctgctacc agacccattc agttctttct tacacaaagg tcttgatgct tctagtatta
       61 gtgatgtact ttgtctttag atgccggcta cctctggttt ccccactctt ctggtagatt
      121 ttatatccgc aaaagctgtt tacttgatac tttgtgcact tgcaaaggtt tctgctgaga
      181 atagaggctt tgctaacccc agcggtctct ttacattgtt caagatggat tgccgtggtg
      241 ctcatgatgt cttaactgtc ttacttctct ctctacatta ttttaatcga ctctttttat
      301 gtggcggcat cctagcatgt acagtatatt aaagccccag agggaactgc aagtgaaaac
      361 accttgttct tctgagaact ccaaactttt tttactggct acagaataaa tgctgcctga
      421 atgagtaatg attagaaagc ttttggaact gtattaccat aggtgacagc tctgaagaga
      481 taggcaggta atgttaagag gcagggataa gaggctatga cattatgtct ggagggttaa
      541 ggactcacag tcaaagcttg aactgctatt actggatcaa tacttctcag ttcaacactt
      601 atcttgacta ctggttagag gcttttgtag atatgaacac tgagagagca aaataaaact
      661 gaaaaaaatg attgttgctg ttcacttaca tgtggattgc tgcagttatt taggtttcag
      721 atccacaatt cctttctcat ggggcaaact ctggtgacct gaaagcagga taaacccaac
      781 aagttacaaa ttatattgcg ttttccttgt ccttttcctt cattttctac caaatgaaag
      841 ggaaaccctg gctgttttta caggtctgct tggaattcta cttgggtttc ttttgccaca
      901 acctcttcca ctttacaaac cagtgtctg
//
LOCUS       KCLA01002737             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44489upu ultra-conserved element locus uce-4413,
            sequence.
ACCESSION   KCLA01002737
VERSION     KCLA01002737.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44489upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-4413"
BASE COUNT          277 a          126 c          165 g          235 t
ORIGIN      
        1 gcatcacaag tgggaggctt tgcttttgta aagtcttctg ccattacaga ctggagcctc
       61 tctggtgatt gaaaggcagg agttgcaata attttagtat ctgtacagac atatgcaaat
      121 cagacgtgga atttaatatt atgggacgtt tgatttcaat agcattttaa aacctacaat
      181 gggcaacata ttttaatcag gtgccttttc aagtattcac aaggtgcctg agggttatgt
      241 aataatacta aaaactttat aatcattcat tgatttagtt ttgagcgtag tatatcattt
      301 taatccaatg ggaacataaa gagctatttg tgaggtcaac cacagtacag acagaggctg
      361 acatgatatt gatggcaagg tggaaagaaa ttgccaaatc cagcagatca atacctcgtt
      421 tcaccgttac agccttctgg agacataaaa tatatatctt tacagctacg aaaataataa
      481 taatgaaagt gggagataaa tgcttccctc aaggtaaact atttgattag ctgagggcaa
      541 aggtgacaat agcagttaca ctaaagtaac tttacagcct taaataaaaa tggtgggatg
      601 agcagcagat aaaagggcaa aatgaaactg aacaagttcc aggagataaa ggtgtaattc
      661 ttctagaaat aggtgtagca tgtgtacaaa tgcaagaaac tgttaagcta aacaaggtag
      721 agcagtttcc ttctactctg tgtttccaat agctaaaaaa gtgttttgaa attggagcac
      781 tcttatttct atccagaagt ctt
//
LOCUS       KCLA01002738             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44504upu ultra-conserved element locus uce-4336,
            sequence.
ACCESSION   KCLA01002738
VERSION     KCLA01002738.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44504upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-4336"
BASE COUNT          149 a          168 c          153 g          192 t
ORIGIN      
        1 agccctctgg gtgaacacct gtaccctggg ttggttgttt atttgttttc tgccggtgga
       61 caactgccct ctgcaaagaa tccactgttt tcctaacgtg aaacagctac tctctctgtg
      121 caggaagaga tgctcagtcg tgttctctgt gcagcagagt tccccctctt tgtcactcga
      181 ctcgtttttt gttatagcaa ggtgggatgg agctggagga cccgggagct tttaacagca
      241 gcagaactcc agctttagcc tcctgctgac tggagctagg acaggcatta gattaacctc
      301 tcttgacagg tcaggctcag caaatattct taaaaataac tcttccagta atttatgacc
      361 tttggggaac ataatcaata gtgttaagag gagaggcagc cagacagcac ttcctgatgg
      421 gggaaagttt cttgtctttg taatgtttgc attctgtctg cttgcatgca acgcgagtga
      481 cttggcagtg atatcatccc cctcttactc cgtggctttt ggagacatac gtttgtattg
      541 tcaatccacc gtctcctctg ttatttcata ggggatctca ttccagctga acccgatgcc
      601 caaccgtgat gacaaagtca gggcaaaatg caccgttcat ttcccccccc cagcccggat
      661 cc
//
LOCUS       KCLA01002739            1074 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44519upu ultra-conserved element locus uce-233,
            sequence.
ACCESSION   KCLA01002739
VERSION     KCLA01002739.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1074)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1074
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44519upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1074
                     /note="ultra-conserved element locus uce-233"
BASE COUNT          288 a          237 c          213 g          336 t
ORIGIN      
        1 gctttgtcaa aaagcttaga ttaataatat cagagtgttt aattgcttaa ctaccccaga
       61 tctgcaaacg tgagacaatt gttgcaacac tccaaagtta cataaacaca agcattttgg
      121 cttgctggca ggttatttta ttttacttaa atccatgtgg atgattattc cttaaaagct
      181 aagttgacaa tggcttgtat caggagacat tctgtctttt tagagtctct tgcaaatgca
      241 aaaccagatg ggttttttta aaaggaattg catttcatta tccagtcttc ttaggtgaat
      301 tttcatgttt aagaagccag aatacaagag agtgctatat tagtgtatta ttctcacaac
      361 aaacaagcca cggttctgtt gctacctgct tggccattgt tcccaattgt gtatgctttg
      421 cagtggtatt tggatggttt cctgctctct gccagcacaa aaaaggcatt tctgttacaa
      481 tggcccctaa ccacacaatg acggcattaa ggatttattt ggaggtttca ttattttctt
      541 ctcttttgtt ccttccagga tgtcttccaa gcgaccagcc tctccgtatg gggaagcaga
      601 tggagaggta gccatggtga caagcagaca gaaagtggga gaagaggaga gtgacgggct
      661 cccagccttt caccttccct tgcatgtgag ttttcccaac aagcctcagt ctgaggaatt
      721 tcagccagtt tctctgctga cgcaagagaa ctgtggccat aggactccca cttctcagca
      781 caacacaatg gtaggtttgc taacggtcta ttgtgcttac atccattctt tgaattctgc
      841 ctctacagta gtttggcatc cagatctgta ctttatggag tatacaatgc acagttacac
      901 atacagaaca cgctacaata atgtgaaagc tttgacccag ctggactgcc tttacccttc
      961 actctaaatg ctgtcacttc cagcacaaac tccacttttc ctcacctttg cctcctcaaa
     1021 tttagggtgc tacttcttta gctgcagcga tgtgaatttg aagtgttcag caaa
//
LOCUS       KCLA01002740             891 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44534upu ultra-conserved element locus uce-7064,
            sequence.
ACCESSION   KCLA01002740
VERSION     KCLA01002740.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 891)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..891
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44534upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>891
                     /note="ultra-conserved element locus uce-7064"
BASE COUNT          266 a          159 c          188 g          278 t
ORIGIN      
        1 ttacgaaata ttttactagt taggtgtatg atttttcaac cagagtgaaa ggaaacagac
       61 ctgttcttcc aagtgtcctc aaacgtatac atagtagagt aagttgctaa cttgtgaaac
      121 aagtagtttc ttaaatgtct tgttagtttc tttaaggctc tataaatgtc aatgaagtct
      181 aaaattcttt gtaaaactta atctggtaaa agtcatttgg ctttgggtgt ttggcgtgtt
      241 ctttcctcgt gttttacctg tgtataatgg aggcagagaa caggacaccc aactggccta
      301 attgtgctga ggttttctcc atctccatcg ggacccatcc tgttgtagta tttaatttta
      361 agacgtcaaa cttcctccta cagtgagaga agtagggata acttggaaaa agttttgagg
      421 ctagtgacaa aatatgtttg tctttcagat ccccagctca agggtatagt gaccaggtta
      481 tattgcaggc aaggctacta cttgcaaatg caccccgatg gaagtctcga tggaaccaag
      541 gatgacagca gtaattctag taagtgactg ccccagggga atgtctttct cacacacgca
      601 gattgcatcg ctcaacaaat gcctttggag ggtttctgaa tgtgttttgt caaaagaagg
      661 agggttctgt ccattcaagg cccagtgacc ccaacacagc tcttgcagga cgttggccta
      721 aatgttttcc ctctagaggt gaaggcataa gtgctgacag acttcaaggg ttagatattt
      781 aggccaatga ttctcttctg taaatttata aaagtgggaa aattatatat taaaaaattc
      841 taaacgatat atatattgaa tgaaaatgtt ttatcttcaa atacataaca a
//
LOCUS       KCLA01002741             523 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44549upu ultra-conserved element locus uce-4977,
            sequence.
ACCESSION   KCLA01002741
VERSION     KCLA01002741.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 523)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..523
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44549upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>523
                     /note="ultra-conserved element locus uce-4977"
BASE COUNT          121 a          110 c          122 g          170 t
ORIGIN      
        1 taatcttagc gttgcgcatg tctgatatta aagtttaact agatctacag cttccccgag
       61 gagtgatgtg caaactaata ttaagattaa aatcttttct gtttgttctg gagctccaaa
      121 cagcaaagca gcacgtagtc tgttttatcc cactggctct ccaaggttca ggtattaaca
      181 taaatacagc ccattaacac ttgttcctct ctgtcaggac ataaattaag tctgcaggtg
      241 ttccatgaag ctttaccctt ggtactaatt aaggcttgat aattaggttt gttaaattca
      301 ggcctttcag ctgatattcc ctcttcgggg tgccaaaacg ggcactcgca tcctgtctct
      361 gcagcttttg ggggggtgct gtgggtttgg gtttgttttt aatgctcgtg aacctctcct
      421 ctttggagaa gtggctcaag attccagacc tgtgaagaag ttgggtatca gctcctattt
      481 gcatcagagc gtcttgggtt gccagctttt tggcggagag cgg
//
LOCUS       KCLA01002742             846 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44564upu ultra-conserved element locus uce-876,
            sequence.
ACCESSION   KCLA01002742
VERSION     KCLA01002742.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 846)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..846
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44564upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>846
                     /note="ultra-conserved element locus uce-876"
BASE COUNT          256 a          182 c          199 g          209 t
ORIGIN      
        1 tctctgcaat taaaatacct ctcaatgcaa gaatggcatc gcacgcgatt gaattaccat
       61 tccggtggca ctcgtggtta aatacaagta cagatgcgat ctattgcggc caagggtgtt
      121 tacagctttc ccatgctgtg aaaatcctgc aatggattaa gagcactgtg cattttcctt
      181 tcttaatccg aagactgatg agggggagac agatccttac ggctcggctt ctctttctcc
      241 gcatttctgg ctaggatatt tcctaacagg tacagtttgg aagtttatac aaggacagtt
      301 tacacattaa tgcagctaga cacagagaag ggagacacta aacggatctc agtgcaatgc
      361 agaacagctc gaaggtttcc atgagcacag aagagacaaa caaaaaaggc agctacagtg
      421 gaaagacacg gccacgcaca caaggtttct taccataaat tgcacattgt caaatccatt
      481 agccagcaag tggttttcat actgaggtag cccaatattt tccaaccatt gtcccactgt
      541 ctggacaggg catcggggtc ctgtaggagg gtgaagaggg aggcgtttaa gcaacgagta
      601 accatccact ggataatagc ggtagtcctg ggctgagagg tggcattgcc acattgtgtt
      661 cctgggaaag ttggtatcaa aggagcccgc cagcttgaca gattgatgtt tccagcaagc
      721 agaaaagtca gaagtaaaac atactttaca gggcagtata tagcgtaaga tctgatccca
      781 gctctacatt tctcagttat taatctttac tatagaccag tacgtcatgc agcaggaaaa
      841 aaaaga
//
LOCUS       KCLA01002743             771 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44580upu ultra-conserved element locus uce-2282,
            sequence.
ACCESSION   KCLA01002743
VERSION     KCLA01002743.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 771)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..771
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44580upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>771
                     /note="ultra-conserved element locus uce-2282"
BASE COUNT          206 a          182 c          194 g          189 t
ORIGIN      
        1 aaaacccggg tataaacaag caagcgagca ctgagccctt caaaaccagg agtgccggat
       61 gcatgagagc tcaggggtga tgaagaggac acaggcagac aatgccaact cagccttaga
      121 aaccctcgca agcgcttctg attcgctcac ctcccctgct ttcatttttc tcctgtctcg
      181 ggtgaaggct tcgcgtttaa taccgtaatt tgcatcagcg tgtcccaact gaccaaggta
      241 ccagggctgg gagagattag catggtaacc tcattctgat ggataaaatt agcaaagata
      301 ttcccctgaa tggagagctg ccattggcga gctgccgtgc ttagaatcaa ttactaaatt
      361 actttgagct ctaagtcgac agtaacagaa aaaaattggc atcgaccgaa ggaaaataag
      421 ataaaaaata tgcgatcatt aaatctctcg ctactattcg cgaatgtgac tcgcaagaac
      481 tgctcaaaaa ataaggctga atttaatttt taacagtgct ccctgtcatc gtttcaaccg
      541 gggctgctcc gtgcacggaa gcacagctca gcctcgctgt ctggctgtgc cgctccagct
      601 cccaccccgt gctgagctgg atgcatcata gggattggaa gccagaggac tggcttctgt
      661 gtgtgcaggc agagagggat gtgccagagc agagagtctt ccttcgtgct gttgtttgct
      721 gctttctgtg aaagcgtgtt ttatgtacta ggtgatctgc aagcgtggag a
//
LOCUS       KCLA01002744             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44595upu ultra-conserved element locus uce-4292,
            sequence.
ACCESSION   KCLA01002744
VERSION     KCLA01002744.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44595upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-4292"
BASE COUNT          322 a          196 c          153 g          317 t
ORIGIN      
        1 agaatgagga atatatagaa gcattagctc actgttcatg tagatgtgta ttatcaagat
       61 ttatattgct tgacaaagaa ataacacttt cacttccctt agctcaaatc attgtgaaca
      121 ttttttcttc ttatttgttt cagctcaaag gtgagttctc tccactccta gttttgaata
      181 tcacagaaaa cgggcttcat acccttgggc tgcttggatt taatatcaaa ttcttacctt
      241 gcacaaggcc agaaaaaaaa ataaagctta caaaattgga ctcgtatgaa gaatgagttt
      301 ctatctttta atactacaaa acaatctgca aattatttaa attaagacaa ccagtgctcc
      361 aacatctgca agcaaaatgc tcaaatgcca aacgcaactt tactggcata agaaaataat
      421 aagtggagtt caatttgtgt cagcatagct caggaaaata agatatcatg tcttgctgtc
      481 tgcttgatgt cagcttctca gattcaaacc ctaatgcctc atcttaggct gtccttactg
      541 gaggctgcca aatagcaagg ttcagccaga gttcatgcag ctactacaaa atagcttttt
      601 ttctccttct cctttttcaa tcattatgaa cgttctgctt tatattgtac acacttgatt
      661 atatctatcc ttgaaatgta tacaactcta ttagcctctt ctcctattct tttaacatac
      721 tgtaaattcc tttcagtgct tagttttata gcttacagaa ttagtctttt aaactttcac
      781 tgcacagagg agattaagtt gtgtgatagg caactagaga aaaacaaaga aatgggaatt
      841 tatattatca caaaaaagaa ccagaagtat gaaccatttt cccaccttat agactcacca
      901 tatttcctct agaatgttca tcgacatcat aaccagttac caaaggcatt ggaagctggt
      961 tagtcctaga aagggaagat cagcacct
//
LOCUS       KCLA01002745            1072 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44611upu ultra-conserved element locus uce-1780,
            sequence.
ACCESSION   KCLA01002745
VERSION     KCLA01002745.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1072)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1072
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44611upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1072
                     /note="ultra-conserved element locus uce-1780"
BASE COUNT          305 a          226 c          223 g          318 t
ORIGIN      
        1 gggggttgaa tgtgagtgat atttgccaga attagctgct aatggtggct aacactcgct
       61 cggcatattt ttatgaatac actttaatct cacacaacag actctgaatt tccgttcgcc
      121 tcgatgatct ctgtctaaaa cttggtctga gcccagattc cacttttatt gaagcactcc
      181 aagccggaca accttttagc cttccctggt gagaacaata tttgctttct gataggctga
      241 atttacatac tttccccttt tatgtgtgtg catgtgtgtt atgatgagaa gtcttaaaac
      301 aaacggagtt atccccagct gctaagttct gacatgcact ttaaataagt aaacccaggg
      361 atgtggcagg ttatgaaggc agggagagca aaattggctt gcatgatgca ctgatcacag
      421 aattatcatc tgctgtcaca cagtttacca ttagacccag ctgctgccag cctgaccggt
      481 gcatttcttc aagctaagct aacaaagcac ttatttgtta tccagggaac tacctctaat
      541 agacttccag tgaaataata tttgctttcc agccctactt tgaatcccac tcactttgtt
      601 aaaaagattg cctctggctg tctccgctgg tctaatctaa tagtttctag tttgtacaag
      661 caaagcgctt tcagccaact atataaataa cttaaagaga agaagacact tttacagggc
      721 tctgtgccgg gtgctataga acatgacaga ttagcaaatg acgcctcagt ggagctcatc
      781 tgggaacctc tgtcagttga atatgagcaa ttacaatatt gtatttgggc tgaaagggtt
      841 gtctgtcttc ttacaaaaag gctaacaaga aaaataattc ctgtcttact tctcctgtgc
      901 atgaaactga tctaagtggc tccagtccct ttgctcttct cctcccatca ccgtcgcagc
      961 agcaggaggg gacagggggg caaacaagag caagaagaga aaagggagtt attttctttc
     1021 tgttttcact tttggtttga attgaaaatg aagaaagaat aatattagga ga
//
LOCUS       KCLA01002746            1031 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44627upu ultra-conserved element locus uce-2238,
            sequence.
ACCESSION   KCLA01002746
VERSION     KCLA01002746.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44627upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1031
                     /note="ultra-conserved element locus uce-2238"
BASE COUNT          319 a          177 c          195 g          340 t
ORIGIN      
        1 tcctctgagt aaggcatctt cttcatttta gatgtgattt tggcatacct taatagtaga
       61 agaaataatg cagtcagtgt ttttttataa aaattaaaca ctttatttct aatatcaaaa
      121 gaaatcacaa agaaatagaa aaagtcttcc tgtgttttta tccttgtgct agccagttca
      181 tggcctcagt tcgtgcttca tggttgtctt tgataaatat aaatgctaac aaggaataat
      241 cataaaataa ctcacacatt ttttttacaa catatgtgag acaacaacct acagactcta
      301 aagcagtcag tataggacac agttgaaatt tagtcattct ctgccacaaa tggtgtataa
      361 acaagctttt gtatcacaag cagtgttttt ctggtacagt taacttattt ctgtctcctt
      421 aaactagttt gtctttatgc tttgaatggt acagtaattt ctttaatcaa attgatggaa
      481 gtccctttcc cagcccacac tgaaaccaat ttattggtca tgatacgcca gctatgttgc
      541 taacagtcgt aacgaactgt caggcaatat cgcagtgaag ctaatttgaa gtcattaggt
      601 gtgcagcgtt caggcaacaa tttgttacag tggttaggaa cacagctgac atttctgaat
      661 ggctttgttc agagcacttc tagatgagcc caagcaaatt gtaaactaat ttaaacatca
      721 ctctatatta taccagctac tttgtcttac actggttgct aataaagcac cccaaattaa
      781 gtcaaaatga gttgaatagg tgaatttgag tttcatcttt ggaagatact tagatcacct
      841 taacaaaagc ggagcagctc tcagtcttgc tccatactag ttgtgaggga actttatcag
      901 tttgatttgt gaatatgctg tgtagctttg gtgtggctgg aggggtatgg agagcagagg
      961 gatgatactg ggaaaccttt aaaataatcc ctttgataat tgtgaagaag gttttggatt
     1021 ctataaactg g
//
LOCUS       KCLA01002747             784 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44642upu ultra-conserved element locus uce-6671,
            sequence.
ACCESSION   KCLA01002747
VERSION     KCLA01002747.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 784)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..784
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44642upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>784
                     /note="ultra-conserved element locus uce-6671"
BASE COUNT          254 a          138 c          138 g          254 t
ORIGIN      
        1 ggtaagttgg tgtatatctt gtattattgt ttctgatagc aattagtttc agagaggagt
       61 agtttttgtt ggctgatata cattgttaag tctaagatac agttattcca ttgtttcctt
      121 cttctgaagc agaggataca ggcactagta tgttttagaa gcagtttcct acaattgttg
      181 actaaaagtg actgaaggaa cagaaacaac attaaaaagt caactgtaat ggagaggtga
      241 attgacaagt cacagttaga accacaaaga ttattcctct aacatttgag aaaatgaaac
      301 ctactctcca cttttccatc accatgcatg caccctcaat taaagcagtg cccctgatag
      361 caggcagtat aatctgcatt ttatttcact catgagcaaa ataacaagtt actcaggcct
      421 gcggcactca tgagtgatat gggccgtgta atatcctctc cattgagttt cctattatta
      481 agcttgaaat aaagagttca aaattaactg tgacaatgat tttatctagc attggcatga
      541 ccattagctt ctgcagttta ctgctaataa aactttaaat ttgctattac ttgtaataac
      601 ctttctgcca ccttagctgt agaaatcaga caaagaactc ttccaaaaca tggctaatta
      661 ctttttctag tactagaact gactagaaat agtgatggct atttagaaaa tagtaatatc
      721 ataaagtaca acatttggga tttcatctga ttaatttgaa gcacatggtt cttcaggtag
      781 cact
//
LOCUS       KCLA01002748             489 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44673upu ultra-conserved element locus uce-5904,
            sequence.
ACCESSION   KCLA01002748
VERSION     KCLA01002748.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 489)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..489
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44673upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>489
                     /note="ultra-conserved element locus uce-5904"
BASE COUNT          166 a           75 c          103 g          145 t
ORIGIN      
        1 agcactcaaa tgtaaatgaa aaattaacag gctgttatat ttagaaatag ctggggccat
       61 acccttggtg tgtgttgcgc acagtaggaa atgagcataa aaaattaggg gggaaaaccc
      121 atggactttg cagctctatt ctctactacg agaaggtggt tgaagtaaat ttggaaataa
      181 aaagaggacc ccccattccg ttgtgtttac ccaaaagcct tttcttccta atttaaatag
      241 cataaacatc tggactaaag caatattaga atcatggcag tagtcaagca aatcttgtgg
      301 aaaataatga aattagatcc ctggtgttgt gacagagtaa gggcaggata catcagttcg
      361 atgttaataa aatttccatg aatgactgaa tacaattaag aaattgtcag ttgcggcaat
      421 gaacttttgt agctcataga tgtttgcatc atttgattat gctagcaatt taaaattgtt
      481 tgttagtgc
//
LOCUS       KCLA01002749             956 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44689upu ultra-conserved element locus uce-3263,
            sequence.
ACCESSION   KCLA01002749
VERSION     KCLA01002749.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 956)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..956
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44689upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>956
                     /note="ultra-conserved element locus uce-3263"
BASE COUNT          249 a          214 c          220 g          273 t
ORIGIN      
        1 gaagatgcca tctgtcatac gtactcctct ctttacttca cttacccttt tcaaaaaaac
       61 tggtgcatca aggaccctag ctggagactc gcgcagcccc ctgtgaaacc tgccttctca
      121 ctcccttttt ttggtgtgat tcaggacttt ggagtcagca aagactgagg agccccccct
      181 ttgctgtaat aagaaacaga catcaagtcc ccctcttgtc actacaagac cctgttttta
      241 tttttcctac aacccctttg aaattgatgt ggtctgggca atagatgcag tctgaccctt
      301 tggatgtcat ttttatcttc atttttttga caattgcccc taagaacccc gaatagggga
      361 caaaaagcgt tggaggacct gaaacgttta cctgaaccca ggttctctgg cgcttcacaa
      421 ccaaatgggg ctacagagaa gcgtctaagc cagttcacag agcgagcgtg tgtggggact
      481 tctcgctgcc atggaccctt gatgcatgct ccccgcgctc cagtggtccc gtgtcagagg
      541 gcggagtttt cgaaaggagg ccgccaaaaa taaaaggcaa agagacggga tcggctgcag
      601 cggtttccca caggaggagg gagtgtgcat cggtctggta acaaacagag aatgtttctc
      661 tctttaaaaa acaaaaaaat gaaggaaatc acaaaaatct gtgttttatc ttggatattt
      721 tcagaatatt ctctgtaaaa tgcagatttt tttttttttg gtgagctatt agggcactta
      781 ctgtaacact atgctttaaa aaaaacgtat gctggaggaa agaggtgctt ctggtacttg
      841 aggtgctttc tgtgaagcat tacactaaca tttgtttctg tcctggaagt tgacaaagtt
      901 tgtcttctca ggaggcacgt ggttccggtc taaatttcag tgtttggcat gcaaag
//
LOCUS       KCLA01002750             280 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44705upu ultra-conserved element locus uce-7741,
            sequence.
ACCESSION   KCLA01002750
VERSION     KCLA01002750.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 280)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..280
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44705upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>280
                     /note="ultra-conserved element locus uce-7741"
BASE COUNT          106 a           42 c           50 g           82 t
ORIGIN      
        1 ctcacagccg agggaataaa ataaagcagg tgagaaatac aaaaatctat gtagcatgaa
       61 atatctctaa gagacttgtt tagcaaaatt aactagtagt ttaatatgaa agcagcttga
      121 tgtatgagag tgctccaatt tcttcataga aattaacatt tcaatcccgg ttttatctag
      181 aagtcattaa actgtgcaac atgaattatt ggaactgtag cagagaatta actctattca
      241 tcaagtaagt ccaaacagtt tagagtgcat ctgtaatgaa
//
LOCUS       KCLA01002751             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44721upu ultra-conserved element locus uce-3810,
            sequence.
ACCESSION   KCLA01002751
VERSION     KCLA01002751.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44721upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-3810"
BASE COUNT          130 a           94 c           88 g          149 t
ORIGIN      
        1 ctttgtgccc gcatgaagag cctgctccag cgtggggaca aggtgtggct gatgagtcag
       61 agataaaccc tgcacaaaaa agcctctgtg ttgctgaatg gctttccagt gtagctcttt
      121 aatttcatct cttggaaatg tttcttctct ttcatccaac tgcctttatc ttaacttctg
      181 atctgaggaa agcagcagcc tttcaaattg aacaaaccgt gtttcaaata ggcttttctg
      241 cttgtgacaa gatgtacctc attttctctg caagccctca gcaaggtcac acctttttaa
      301 tttattttct gtaagaaaaa tctagttgtg tgatagaaca aggccagatc tagctagagg
      361 tcatttcttg aactagtcat aaagtagaat aggaatagaa ccatttaatg tcccagaact
      421 taacaagcat agctctttta aaatgtaagt ttcatatttg t
//
LOCUS       KCLA01002752             992 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44737upu ultra-conserved element locus uce-3470,
            sequence.
ACCESSION   KCLA01002752
VERSION     KCLA01002752.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 992)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..992
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44737upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>992
                     /note="ultra-conserved element locus uce-3470"
BASE COUNT          300 a          201 c          202 g          289 t
ORIGIN      
        1 aatggttttg cgttaatgca catcttggtt aaataaacta gttttccagg ctgctagctt
       61 ttcatttacg tttctggtag attagattga gctatgaact gagcatcaca tttgtcagga
      121 tatgggaaga ggcaaattag tcccttcttg tacaactgtc cacctaagag gcacctggct
      181 ccacctggcc acttgagttg cccatggaaa tcagtgcttc tggagggaat ggtgctggga
      241 gcagcactcc agctcagcag cctgggctgt acaccactca ccccttacca tggaatatag
      301 gtaccagact cagcttaatg agatacactt ggggcacttt ccttgaggtt tgaactggaa
      361 tgtttaccca acatacctga ggcagtcaca aggagggggg gaaaaaaggg aaaaggaatg
      421 ataataaaag gttgattaat tatgtgcaat aactgggact gcatatcatg aaaattccat
      481 tcttgtttac tcagctaatt cactttttat gagtgtttag gctttaaagc aaaacaaagc
      541 actaattacc caattaacga gcaattaagt tactgcagcc taatagcctg tacagtggct
      601 gcctttatga gtctgatggt gagttagaga cccattaaac aaatttatac acagctgtag
      661 caaacattac atttccagag atgttacatt acatgctaat attttcacag ccttgaaaca
      721 tcattcactg ctttagtgaa gagacttcgc ctgtttactc agccaaggcc ttacaaagga
      781 aaagtctttt aaactttacc agcagctact acccaggggt agaagtggag ctctgtattt
      841 caaggctttc ttgaaaattc aggtggctta accaaggtaa gttacaatta ctttaaaacc
      901 ttttaatttt gccttaattt agaaagaaat cacaatccct cagtcactct cagaagatga
      961 tactctatta gaagtttcag gcttgcaatc ag
//
LOCUS       KCLA01002753            1114 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44753upu ultra-conserved element locus uce-6730,
            sequence.
ACCESSION   KCLA01002753
VERSION     KCLA01002753.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44753upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1114
                     /note="ultra-conserved element locus uce-6730"
BASE COUNT          288 a          267 c          228 g          331 t
ORIGIN      
        1 tgtaatggaa gtgctgacag acgtaactgt gaccctgatg gaatttctag gtttggctac
       61 aataaatttt gctttttaca ttagctacaa tgagctgatt taattttgtc tcagtttaag
      121 taacaagcaa ccaaactctg ttgttgttcc aaggcagacg taatggtgtg gcacagtggt
      181 tatttcatag taaatcaggt tttccttttt tcactaaaca acaaaaaaag ccaagataaa
      241 agcagctgta ttttgataaa tgaaaacagt ttgtaaacgt gtctgtgtgt ttcatatatg
      301 tcttcacata aacgcacgta cgtacaaatt tatcagatta catctgcttt tacctttaaa
      361 tttttatgaa cacaggcata tggcacattt tcctgccttg gattttttgt ctgcacagac
      421 aggctggctt ggcactccat gagcatacac agctttaagt atttagctga gaaactctgt
      481 tggaaattag agcatccgtg cttgcagagc tctgggtgat ttgacctccc agggggtccc
      541 ccgtctggcc cctggctcac catgccatga atacatttcc atccatctcc agcccccatc
      601 acctaggcag ctaattcctt tgagccccct ccgccttatt aaagtcacag atcactttac
      661 caagcttaat actgtcaggg ccagcagagc aagagttcag acaggctcac cacaatccca
      721 gctttcatta gggtgggttg tttttttccc cccttttcgt gttttgatct acacaactcc
      781 tagcaatgag ctgtagggtc gcctccagat tccttcagta aacccttggc atggatacaa
      841 gtgccgtcac agctgctgca aaacctgctt ccaaaggcag cagcgctgcc tgtaatagga
      901 aaggactcgc ggcacactgg aagtattttt catcagaggg gtgcgaggct aattttttat
      961 ttggagagca cttttcccct ctacagtctg ttttgcctcc cctgttatga aatatggatg
     1021 gtaccagttc cagcgtttgg agactaactg gcagagccga gcgtctccaa agacccgcct
     1081 tgtgcatgca cctaaacact tcactgagca atct
//
LOCUS       KCLA01002754             979 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44768upu ultra-conserved element locus uce-6085,
            sequence.
ACCESSION   KCLA01002754
VERSION     KCLA01002754.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 979)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..979
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44768upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>979
                     /note="ultra-conserved element locus uce-6085"
BASE COUNT          273 a          234 c          185 g          287 t
ORIGIN      
        1 tctccctctc cttccccgct acgaggctct cagctgcact gcatcccatt gaaccacttt
       61 ccttggatgc tcttatctac tgctttcctt aaataaaggg aagaggaggg aagaggtgga
      121 gcttggtatt attctcgatg cacttccctg gccacaactt ctccaaaatg ccttttgtct
      181 gtctgagctt ttggcacgga acgcgagcgg cacagctgta gagcagctga gcccaaaaat
      241 ataatctaga aaatcagtgc tgagagggtt aaacctattt aaggggttaa atatgcaatc
      301 accgctgcct aaaaccagag agacatatag ataaatagaa gaaatgaagt ccccaggttc
      361 cattcagaag ccttcatcac attactacca gacagaaaac tctttaagta ccattttcag
      421 atgttaaatc attgttcgtg cagcacatat tctcactatt cctgggggaa caatatctga
      481 agacagcgtg ctaacaaatg caatccagta aacaggcatt tttcctcttg ttgttagtac
      541 ctttgtgttc cagctcccag ctctgtcatc catgccttct ctctgctttg aagttaaagt
      601 agtgaatgag cgttgtcatc tattatccag agtgtgcatg tagattataa ataagaaata
      661 aaagtgactt tcagtacact gcttttgcat tagcaagttg ccttctctgt tacctcctct
      721 gtccttcata ctttgctacc aacattatat taaaaacctg acttgaagtg tttcttgccg
      781 actgctataa aacacgtttg cggcgcaggc aaaagtttta ttgaaacaaa caagtccggc
      841 tgtttaacca ggttcatgag ttcagcttca acagactggt taacccttat ctgcagatgt
      901 ccttcaggcc cccaacacat taattgcatc cctggcttct tttgcatgca cagcactgaa
      961 aacacggagc tgctaatta
//
LOCUS       KCLA01002755             236 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44783upu ultra-conserved element locus uce-2827,
            sequence.
ACCESSION   KCLA01002755
VERSION     KCLA01002755.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 236)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..236
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44783upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>236
                     /note="ultra-conserved element locus uce-2827"
BASE COUNT           52 a           56 c           98 g           30 t
ORIGIN      
        1 agaggagagg gaggcacggg cagggaggag gaggaggtgg aagaggaaga gcgcggcccg
       61 gcaccggccg ctatggacca gtgcgtgacg gtggagcggg agctggagaa ggtgctgcag
      121 aagttctcgg gctacgggca gctctgtgag cgcagcctgg aggagctcat ccagtacgcg
      181 ggcgggctgc gccgggaaat ccttcagacc gaaagtacgt agagacatct ctctcc
//
LOCUS       KCLA01002756            1190 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44799upu ultra-conserved element locus uce-5178,
            sequence.
ACCESSION   KCLA01002756
VERSION     KCLA01002756.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1190)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1190)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1190
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44799upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1190
                     /note="ultra-conserved element locus uce-5178"
BASE COUNT          329 a          275 c          248 g          338 t
ORIGIN      
        1 atttaaattc ctttcagtgt tgttccatag ccaattagag tggtagccca gcctatattc
       61 atgctagtct tgtactatat tgtaagaaaa aggaaaggag cagctcagat gtctttaatt
      121 attcctccag ccatttattg acctgctctc taaaggccat atacgggcct tcatctgcat
      181 gcaaaattcc tattgacatc actgggacgg ccacaggcag atggagggta ctttgtaaac
      241 ctcacatttt aaatatgttg caggagaaag gtgcggaatt cacagtcctt gaacaaagtg
      301 agcagcttta tctgatactg ctctttaaac atggagtttg aataacattt ttcctagcaa
      361 taacatccct gctcttctcc acaagctatc taacctacac gtttctgtaa agtcttcata
      421 tttaacactc aaacaattga tatccctaca gtataaacag gatagataat gaatataagt
      481 gggatagaaa attaatccta cttgcgaggg aagagagtca taattcactt aggcttctca
      541 gctcttacgt tatgaggtct tcagctaact catgggatcc attccacatc ccacagatgc
      601 tcattatgaa ttctttttat gtgcaacatg tggggactaa ccagtttcat atctcctggt
      661 attagctcca atccaaagca ctttgtatta aaacggaatg caaacacaga tgctatttaa
      721 tacaaaggat ttgaatgcac tctctgtttt aacataaagt tggtgcgtct taatttggtt
      781 tggaatagca acggaaagga aagtcaagac agaaggatat tgttagatta ggaactgagc
      841 tatgattcca agaggcacac agatggatgg gaaaagggga gactggccca ggtgatggct
      901 ctgatttatg gatgcaaagg ttaccccgcc ttcggggtga tggggccgcc tgcgacatct
      961 gctcccttca gagatgttgc catggccttt ctgacactgt gtgcatgctg gagtgcaacc
     1021 tgtactctgt cccacgaact cctgggatga gccctacctt tctcagtcac cggtaccaat
     1081 tctgcttgtg tcaggggcac cacctcagcg cggtacttct tccccagctg cagacacact
     1141 gggctggcca cgagtccagt cctccccgca ttcacaaccc tttcacctcc
//
LOCUS       KCLA01002757             870 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44843upu ultra-conserved element locus uce-7914,
            sequence.
ACCESSION   KCLA01002757
VERSION     KCLA01002757.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 870)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44843upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>870
                     /note="ultra-conserved element locus uce-7914"
BASE COUNT          208 a          176 c          225 g          261 t
ORIGIN      
        1 agaccactca gatcgtcatg tgtccccaat atccgctcgt ccttatgctt gtgcttatgt
       61 ttgtgtttcc ttttgtgaag tcggacactt gaaaggcttg ttcctccaac cttcggagga
      121 gtcaaagagg actgcatgtc tccaaggctc attcccacag gtgtttgtag gtgcactcca
      181 tgtttcgctt tatgcttggc agtagtggac atcttcatat gagagcttgc atggaattgg
      241 ggtgggggca cggtaggtct cataaatggg gaagccgctc cgagcgtgtg agacaggtac
      301 aaaggagctg gatactgacc atagtaacca agattcatca taggcattga tgtgtaaggc
      361 attccatagg gtgcatagta actcccactg ggaatagggt aaccgaaccc ttgtaaaaaa
      421 ggcacctttg tcatggtgtc attggttttg gcaggtctac cacgcttctt cttagacttc
      481 atgtcagagg tccgccgaag atagagcaat gggtcatatt ggatatatgg cacagggtag
      541 tagtgatcaa aattaattct gaagatgctg ggatatggat tttcatgata aaatgtataa
      601 cttctatggg aaatcctgaa aacttgaaac ttattgatga gttcctcaag gtctgccaga
      661 aactggaggt catctctgtt ctgcaggctt ttccttttcc tcttgtgctt tggcttttta
      721 atgctctcat gagagagaaa gttatccaca atgagatgtt tctgccggtg accatgcctg
      781 ttctttgtgc tggtgtcaga tgggatagcc tctggattgt ccagggtgca gaagtcaaag
      841 gagtatctcc ggcgggactc tgagcttttc
//
LOCUS       KCLA01002758            1031 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44858upu ultra-conserved element locus uce-7790,
            sequence.
ACCESSION   KCLA01002758
VERSION     KCLA01002758.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1031)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1031
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44858upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1031
                     /note="ultra-conserved element locus uce-7790"
BASE COUNT          366 a          168 c          186 g          311 t
ORIGIN      
        1 gtgagaatag aaatttcttt ccttacgatc agtttttatg ctgtacttta aatcattgca
       61 acctttccac aggcttagct tttgttaaca aatgtcataa tatgactagc catacataat
      121 tatttgtgtt aatgaaatac ttggctgcat ttttggtcca ttcggataca agtatgagtc
      181 tgatagagac aaatgtgttt ttcagtgtgg atttacatac atttatggat tagaatcagg
      241 cattcctcct tttatagtca gtgtaggttt aactaggtta aaaggttttc ctgaatattc
      301 atccagacat tgcttttgaa ataagcttct agtgtaagca aattaaaaag tacataaaaa
      361 ctggaggagg agaagcaagt tgaaaagaaa tgaaaaacta agtgtattta agttttatgg
      421 cttacaaacc cccaaatttc agagctttgc aaaattaaaa ggttagctat gaataaccac
      481 aatcaaatct tttcttttgt ccatatttaa ttcaaatgag attgctccat attgacttct
      541 aatgctaaaa ggccacccat catggaatcc ctgcagccaa tgaagcaagc aagtgaatgc
      601 tttcttaaat gatgctaatc agtccagaga ggcctgccct ctatccccat cagtattctg
      661 taattcagat gtgctgataa cctgaaattg aatgtgtcag tatgcagaca tgtgaagaaa
      721 aaaggaaacg agaaggcaaa agaggcagct atagagacaa tgcctgtttg atttttttat
      781 tctgagcgaa gaataaaaat aatagttggt agttgtttcg aatgcttacc agagctatac
      841 aagaacaagc agaaaattca taagtaggct agacattcag atttcaaatt gatggattga
      901 gaggaaataa taaccaaata aaagcccaac aagccctaaa ccccaaacca aaatgaatac
      961 tcaagagatt ataccaaagt gttaaaatgt ttatgtgcac ctagaaaggt cccagtgtaa
     1021 atgttttaaa a
//
LOCUS       KCLA01002759             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44874upu ultra-conserved element locus uce-360,
            sequence.
ACCESSION   KCLA01002759
VERSION     KCLA01002759.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44874upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-360"
BASE COUNT          248 a          127 c          110 g          202 t
ORIGIN      
        1 tttatgcaat cttggcttgt tgtacaataa tagccctttc tcaacatggg aaaaaattac
       61 agacccaact aatttccttg acagggaaga gttacatatg ttttccactt gtagttttta
      121 cgacaagttt acaattttgc caaacctgga actaattggg accgcttcca aaaacagtcc
      181 aataaaccca caatgggtac agccactcta aaatgcagca aaggattgtt tgcttttaca
      241 tttttgctaa cagggaaaag ttagattgca caattatttc atttaagtta cttaaacact
      301 tactgtttca tatcctccca gtttttgagc agcttgaaac atagtccaaa ggttaactgt
      361 tagagggaca ataagtattt agataagcat tgcattaacc aacatatttc aaagaaatgt
      421 aaattaaaca gtattttaca aagaagaaga aagaaaaagc ctcaccaccc ctgaaaaagc
      481 tcctgtgaaa cattttccag agaggtattt acataataca aagagtacgt attaacccac
      541 aatatatata attttaatta catataagag aacacactta gattccttaa caggactgga
      601 aaaatacact gagacaaagg gaatgggctt gtttgacttt gctgataaga ggcaccatgt
      661 aatcactgca gcatgtttcc ataactt
//
LOCUS       KCLA01002760             192 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44890upu ultra-conserved element locus uce-2927,
            sequence.
ACCESSION   KCLA01002760
VERSION     KCLA01002760.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 192)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 192)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..192
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44890upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>192
                     /note="ultra-conserved element locus uce-2927"
BASE COUNT           60 a           46 c           37 g           49 t
ORIGIN      
        1 tggaatggtg agaaatgaaa aagccccttc cctccctccc ctcacctccc ccttcaaaag
       61 gaaaagtgta ggctatagaa gaaaacttgc aaaataaatg ttagaaacat atttactttg
      121 agggatccaa ctctactagc aactcctttg ctttcatccg gccgtctaat ttgctacaat
      181 gggggaagat gg
//
LOCUS       KCLA01002761            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44906upu ultra-conserved element locus uce-1447,
            sequence.
ACCESSION   KCLA01002761
VERSION     KCLA01002761.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44906upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-1447"
BASE COUNT          312 a          199 c          215 g          309 t
ORIGIN      
        1 tctttatttg aagtaaatca agcacagtaa aatgatacaa taacaaaaat aattaaaaaa
       61 tagaatttct aatgagtttg gtggactgca ttcactgagg gtgaataaat gtaattacaa
      121 aaccactgca ccacattcaa cccagctaaa atcattgtgt ggctgctttt ctgtgaggtc
      181 catgttccct aagctgtgtg acaactgtaa aagtgggagt gaggcaatta gagagccttg
      241 aacaaaagca ccacctcaga tgcactgtct gcaccagctc tgtgggagga acgctggtct
      301 gtgcagccag ctctgcttcc cattgcttgt gcacgcgtgg ctgcagggag attgtgaggt
      361 gacatggcca gcctgatgaa gtatacaaaa gcttttggcg ctgcatatct gcaatatcat
      421 ggacagtcag ggaggcgcct gttataaaaa tacacagtga aactcaactg gaggactgct
      481 ctttctcaaa ggctaacgta atgcattcct tctgtttagg ctcattttcc agcctttcac
      541 attctttgtg aacaagagtt ataaaacaag cctgatgcaa ttatttttac tttggaggcc
      601 attaatcaag attgactgag aaaatgaaga cagctaagca aaatttcata tgtgactaga
      661 gtgagattaa aataaaacca gatggggatg gacagagacg ttaagctgct ttctctcctt
      721 gctacctcct tttttttttt tttttttgac tcatgcaata aatgtctttt acaaattaca
      781 gcacagttat tttcttacag taaatcaaat tgggtcgtaa tgtacaagtg gtctcattgc
      841 tgaaatgtca aaaatagaac ccgccttgtt cttctgaagt aattcctcaa atgcaaacca
      901 gtggtgtggc ctgactgtct ataaaccatt tacctggatg aagatctttt ttaaggtaac
      961 tgtctattgt tgagatgtat ttcacaagtg cctgatacga gccagacatt gagatccata
     1021 acgtgcagct gattg
//
LOCUS       KCLA01002762             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44922upu ultra-conserved element locus uce-4166,
            sequence.
ACCESSION   KCLA01002762
VERSION     KCLA01002762.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44922upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-4166"
BASE COUNT          153 a          116 c          101 g          109 t
ORIGIN      
        1 ggtgcacaca caccgcacac acacacgcac tcactccagc ctctgctact gacctttgcc
       61 tcgaatagca ataactcacc acataaatga acaatcaacg gaaatacctt aaaataaaat
      121 ccatcctttc taacgaagca tttcgtcctc tcggttcgac aataaccttt ccataaggaa
      181 cgaaagctgt cagcgaaatg gccagcactt gcggggacga tggtgggggc aggaggaaaa
      241 aaataataga aagcagtgcc tgctctgaac agaaactgga aaagcgtaat cgcagacgga
      301 gccagaccgg gtctccactc caaatgccac aataatgcgc tgtattatgt gctcacgtgg
      361 tcatacgtca acttaaatcc ttttatttga aatagggaat cattgaagga acagggtttc
      421 ttagcgcgag cctgtgcttt ttaaagcctt aacccagtat gttaaagagg agttttaag
//
LOCUS       KCLA01002763             672 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44968upu ultra-conserved element locus uce-3790,
            sequence.
ACCESSION   KCLA01002763
VERSION     KCLA01002763.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 672)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..672
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44968upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>672
                     /note="ultra-conserved element locus uce-3790"
BASE COUNT          176 a          143 c          142 g          211 t
ORIGIN      
        1 tttgtatgtt gatagcagag caacaagaga gagatggtgt tgaaagttaa attaccttct
       61 gacttggttc catatatgca tttatatttg tgccatgaat agagcagtac ccactgcaca
      121 tatgtctttg cttataatat atatttttac cccttatctt cccttccccc tcacttgtct
      181 ctttttttag gccttcatag ttatcattcc caagaacatc tgagaacaac gggatggcat
      241 caccgtacaa ctcccccttc tcttactctc ttgaggagct ctgtgtcata ttgtcagtgt
      301 tttatatatt tacaccaaca gaggaggcct gggatgtggg ctttttcgtt tatatgagtc
      361 tcaccgccac agggggtatt taactttctg ccctggttgc tgtaattctc tctccagtgg
      421 atatacagtt cagatcaggt tcctattgct gtgatgacag gcattcagca ggcactgtaa
      481 ttgcagagtt aaaacagctc attttcttac tggcaagctg tagttaaaga ggtgctagga
      541 ggcagcctgg ctgtctgcag aggaactgat caaagcactg aaaggcatct ggcttgtctc
      601 tgttttcttt caccaccccc cttgctgatg gagaggaaaa aaagagagga gagaataagt
      661 gaacaaaaaa aa
//
LOCUS       KCLA01002764             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 44984upu ultra-conserved element locus uce-2533,
            sequence.
ACCESSION   KCLA01002764
VERSION     KCLA01002764.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="44984upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-2533"
BASE COUNT          221 a          170 c          146 g          197 t
ORIGIN      
        1 gaggtacagt aaggggctcc atcagtgagg taaatagagc agaacatgct cagaagtaga
       61 aaaattggaa gctacatgga agcctggttg gtttctcatc tctggttctc ctgcacaaag
      121 gcaccgtatt gtctctgcca ttaaggtcga agcttccaat agcccgaggt ccagtgacac
      181 cactttccat tcccttccaa ggttcattcc cccagcggga gtttatagcc atacagttca
      241 acctgatcag cattctaaat tgacttttga caatgaactc acctcctatg ttgttcttgt
      301 aagtattata caactctttt actcttctgt aacggaaagc cagcttcctc atccagtcaa
      361 cccctcctct tacacctgtt ggcagacaaa ggtttgcact acttgcagct gcatggaagc
      421 catcagttgc aaaactgtag gtactgcaaa cacccaaaat acagtaaaaa taaatacaac
      481 gtattcctgt aaatgctcaa cgtatttaat ctttgaatta aaaaagaata acaaaaggct
      541 gtctcttacc ttaggtcttg tccattatca tcagaagaaa catcatctat atgaacttga
      601 tcacactcct gttgggaaag accaaacggt aactggtaag agagtattct caccgtacgg
      661 ttggtacaga ggttgaagag atgatgtgca ggctgctaac tgcaccagga gatggcagca
      721 tgtgtgcacc taaa
//
LOCUS       KCLA01002765             854 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45014upu ultra-conserved element locus uce-1898,
            sequence.
ACCESSION   KCLA01002765
VERSION     KCLA01002765.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 854)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 854)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45014upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>854
                     /note="ultra-conserved element locus uce-1898"
BASE COUNT          215 a          237 c          144 g          258 t
ORIGIN      
        1 aaagtccttc caactcgctg tgcagcctgc tggaataaca actttaaaaa gtgaagatgt
       61 cgctttttta tagctgactc acatttatat aactttgtta atgcatctgc tccctggaag
      121 ttccaggctc ggtgtttagc tgcgatacct gcccataaat cgtggtggcg cggcgaatat
      181 caacagctgc attttactat ttcaggccgt cagcttacag tgtctccatc acggcgaatt
      241 cctgtcagct gcactctcac taacacaatt cctatgtttt gcctggcagt aaatggacgc
      301 tcctgcccca gcatcatcta aacaactctg ttaacatttg cccccgagcg tctctctctt
      361 tgtccagtcc ctgtcttcta acagatgtca tccaagtcta atcaagcata aaatggtcat
      421 aaatatttct ttctggtaga tttcacattc gcatttcatg cagggacatg atatttttct
      481 gctacctcca gggagtacct aatgcaaaaa ccagttactt acattcaagg ctcatgttcc
      541 tttagtaaaa tgcagcacat gttctcggtt caaagacata aaaaggcaca agactttatc
      601 ttcttttgtt taactgcacc cattttcttt taaataacgc gtgccacggt ttccatctag
      661 gtgtgacacc gtcctttgct taacagcaaa acacagcacc ccatcgtgcc gaatgctgac
      721 cctgccactc tctccagcac aggcatttct gaaggtcacg ctgccaccct ttaattgttg
      781 cacaaatgat aagaggtttt tttacttaac ccacccccct ccccggtacc ccccacctca
      841 gctctttcat ttac
//
LOCUS       KCLA01002766             349 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45030upu ultra-conserved element locus uce-124,
            sequence.
ACCESSION   KCLA01002766
VERSION     KCLA01002766.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45030upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>349
                     /note="ultra-conserved element locus uce-124"
BASE COUNT          124 a           56 c           82 g           87 t
ORIGIN      
        1 aacaaagttg tcaaatgcat gcagctctga cagtttgtct ttctgcaaac tgccgacaga
       61 ttgcaagtta cgcatgtgtt gagcagatgg gtaagttaaa aggaacacaa aaaaaagcaa
      121 tttattaaat cacctggaac cagcagctcc attccaaaaa tagtgagaat gaaatatagc
      181 aagagctagg agagttggca ctggaatatg ccagaaggta ccagttacaa aacaagataa
      241 acattttgag aagcctcagc tgtgttgcag aataatgagg cgttatttaa cccgatatag
      301 attaccagca gaaattaatt tagggtgcag ggttttgtga gagtgtgtg
//
LOCUS       KCLA01002767             774 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45046upu ultra-conserved element locus uce-2183,
            sequence.
ACCESSION   KCLA01002767
VERSION     KCLA01002767.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 774)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..774
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45046upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>774
                     /note="ultra-conserved element locus uce-2183"
BASE COUNT          259 a          150 c          134 g          231 t
ORIGIN      
        1 ctatgtcttt atcacatggc ctccctgctg tagcccaccc gccccatgct ccttcgcctg
       61 gccaaactgt caaaccagaa gctgatagag accacccaag cgaccaattg tagcctatga
      121 aaacagcatt cccaacatca gagatttcaa cttcagcgtg cagaaaacaa aaaaaacaac
      181 aaaacaaaac cctggatttt gattaaaggc aaaaccatga acttacagga ggagacaatt
      241 attgttttag aaactggtcc aatatacagt ataaaaggaa aaggtgggag acaaaaagaa
      301 gatttggaaa cattttttcc tccgtataaa ttgtagtttg tccctgtcca gtggactgat
      361 tcactgtttc tgtgtcctat gggttctttg ttaagcaaga gaagttagta gttaattata
      421 tcatgaatgt acttgtctgt gtacagtttt tagaacatta aaaagggttt gtttgcttag
      481 ctgtcaacaa ggaaaaacat aagggaggca ttcaacaaac caattttgag attaaaaatc
      541 ctttctttta tattttaaaa catgcccaaa aatgaggcag ttggcagact tctcaggaca
      601 atgaattttt cccatttttc tttctacgcc acacagtgca ttgttttttc tacctgcttg
      661 tcttattttt tagaataatt tagtaaacaa aagaaaaaca gtttctccta attttggcat
      721 gaattccctt atttcaaaat gaagacaacc ttgcaaagag attttgagga aaca
//
LOCUS       KCLA01002768             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45062upu ultra-conserved element locus uce-6990,
            sequence.
ACCESSION   KCLA01002768
VERSION     KCLA01002768.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45062upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-6990"
BASE COUNT          213 a          142 c          145 g          235 t
ORIGIN      
        1 atgctatttt taattgtttt gttttttttt ttttattacc ataaagttgt ggctgtgacc
       61 tgggttctga cagtgttact ctcagcattt aaaaagactt ctggagcaga attggttaat
      121 tagtgctttg tgttacactg tgttacatat gacccgacca gagataaaaa ggtttaaagg
      181 tctcttgtaa ccctgcaatg ccatttgtaa cacaaaaata accccctttc attactggca
      241 tgccactgta gcaggcaggt tattttttcc cttcgctgca atgagggcag ctttcgcatc
      301 agaagaattc ttggcaaatt aatgcgctac ctcttgggct aattaaatta gaaaggatca
      361 aaaatacaga gcagcttttg tggtggacac aatgttgtgc ttcatgcatc ttgctcagag
      421 aggaatttct gccatttagc ccctttttgc ctctagcagc gttctggact ctctaacaca
      481 gtcaagttcc taatttgcct caatgagaga gaattattaa ctgataataa gaaaaggagc
      541 attcacagct ccaggctggg ctgtgtggaa aagggtgagc tacacagcac ctgaagcgca
      601 tgcaattttt attaattcct gcctaaaaca acgcattcag gagtaaaatt gctgtgcaaa
      661 tgacaaaaac aattataatt ttgattcttc ggctctgaaa atatgaactg ctttgtctca
      721 aatacgacta gatta
//
LOCUS       KCLA01002769             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45076upu ultra-conserved element locus uce-2561,
            sequence.
ACCESSION   KCLA01002769
VERSION     KCLA01002769.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45076upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-2561"
BASE COUNT          215 a          136 c           93 g          180 t
ORIGIN      
        1 aggacaccct taaaacccaa aaactctgga aaaggaacag gtttaatatt tcatacacaa
       61 tcccagaaaa agtgttttac ttgaacttcc aatatatttt gtcataatct ttatgttaac
      121 agggctccta caaaggttcc aggaaagaaa tacttatgaa acagagaaca agggaacata
      181 taagccatta caggagattg gattaaaatg tacttaccca ggcctctcaa atctcataca
      241 tctccattag gtaggcttta ggcaccaagc caatggttcc cttcagttct cctatccacc
      301 agccaaagct atcgtactcc taattgaaaa caatatgcaa tattaacctt tagtctgata
      361 taaatgcaat agagtcttgt atgcaactcc ttatggatgc tttctcttac atacggttgc
      421 aataatttcg actgaaaatt aaaacgttac atcttttagt tagaggcatt tgcatgcaga
      481 gttaggcaac gacagaagtt acattttaaa aaggccaggc acactcagga aaatgtctta
      541 attatggcca tgcttctctg taacacctac taaaaatagc tcacctctcc atcctctatt
      601 catcacaaat ctaaaacctt atct
//
LOCUS       KCLA01002770             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45106upu ultra-conserved element locus uce-3807,
            sequence.
ACCESSION   KCLA01002770
VERSION     KCLA01002770.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45106upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-3807"
BASE COUNT          166 a          107 c          127 g          164 t
ORIGIN      
        1 acttgttttc ttggatgtaa aatcctgaag gaattggtca ttgtgtctta tatgacgttg
       61 aggctcacca ggcaaaagtg ggcttgctcc ttcacttttc ttttgggtga ttgactatga
      121 agtccatctc actgcacatt cttatgtgag atagttcaac acagtacctc aaggctctat
      181 ggtcccagaa tgcagtgcag ctcactggca gtagttcagc tgaagactaa acatttggct
      241 cagtgacagc agagctgcca agagttggca acaagagact cacagggaag cagcaggctg
      301 ctaaaccctt tcacattttt aattagatcc acacacccat gtctttgagc tatcataaat
      361 atacagatga catagagagc attatttggg gtaaggaaaa aaaagaaaac tgtagtgtgg
      421 tatctcttac cttattaaaa taatttacct acagctagtc tttggaactg ggcgggggtg
      481 gaaagggaat tgtgacattt tactcagata aaagtctttt cttgactaga gtggaattca
      541 ccctgtacat tgaaaatgca gggt
//
LOCUS       KCLA01002771             408 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45122upu ultra-conserved element locus uce-1029,
            sequence.
ACCESSION   KCLA01002771
VERSION     KCLA01002771.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 408)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..408
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45122upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>408
                     /note="ultra-conserved element locus uce-1029"
BASE COUNT          160 a           63 c           56 g          129 t
ORIGIN      
        1 ggcttgctaa ggaaatgagg gtttcatggt tagactaatc tcgtaacgga actgcagagc
       61 atcatgctat tagtcacaca gtgggtttca aaatttaaga gctttatatt aaaaaccggg
      121 tcaaggtaaa atgaattgat tgcaattgta aaattaatac attcccgttt taattcttct
      181 gttctacagt ccaaggcaag tataaatgtt aacgtaacac tgttaaatca aatctcaatg
      241 caagagaacc gattgcatct ctactttaaa tcttatcaac tttccaaatt ttcatactaa
      301 aatatattat tgtattaata caaactacag tattatacac tacactgtgt aataaataaa
      361 gaaatataaa aataagacac ataaatataa aagttttcta aaactaaa
//
LOCUS       KCLA01002772             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45138upu ultra-conserved element locus uce-2024,
            sequence.
ACCESSION   KCLA01002772
VERSION     KCLA01002772.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-2024"
BASE COUNT          274 a          136 c          112 g          224 t
ORIGIN      
        1 tatttacaga attaaaaata attctaaaat gagatggtaa gttcataaaa aactttgttt
       61 tgagctccaa ttaataaggt aaaaatgttg tgttttatcc ttatgattgt ccttccttga
      121 tttctactga cattttagag ccaatgtcgg ctaataaata gaataaaatg ctcatgtgca
      181 caattcagat tcaaatatgc ctctcactct cccagccaat aaatgcaact tttaccagct
      241 agcaattcct gaacagccag tcattttcaa gaatgtggct ttaacatatg gagcatcagc
      301 actgagcagg gctggagcta aaacaaagtg ttcatacata catgtatttt gcataaataa
      361 atgaaataac aagacataaa aatgactcaa atccggcaac tgtgaggcag gcccacacga
      421 gtcgaaacag atgacttttg ttcatgtagt tttcgtacaa cagtttcaca ttagtcagaa
      481 gtgataaaaa ataccattta tatccagtgc ttataacact tatgaaacaa catctgtgag
      541 tgtgtgtttg tactacaagc aaaatcaagt ttcagtccta aagaacagtc ctttgttctc
      601 cacaagcctg ttgaatatta ttttggcatg gtcataaaat taaaaaaaat taaacaacta
      661 atctaaatgt ttgcctttgt gcaaaaacat aattacataa aatacaatac tagcaataca
      721 gcattctacc tatgcaacaa aaccag
//
LOCUS       KCLA01002773             284 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45153upu ultra-conserved element locus uce-6233,
            sequence.
ACCESSION   KCLA01002773
VERSION     KCLA01002773.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 284)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 284)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..284
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45153upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>284
                     /note="ultra-conserved element locus uce-6233"
BASE COUNT           77 a           62 c           64 g           81 t
ORIGIN      
        1 tgtagaaata ctccaaatca gaaagtcaat ttttgctcta tttgcagaag tgtgctggtt
       61 ttcactggaa aggcgcctgt gttttgtttg gctgctgttc atatactgcc ttggcaggat
      121 ttccttggat tgcttacagt gaacattgct cttgcataca gtagcactcc cattttaacc
      181 gtcccagcca cacgttttct aataacacac ggagagctgc aaaatcccta taagcacagc
      241 tctttaaagc agcaacagaa gggggtggga gcagagaact ggaa
//
LOCUS       KCLA01002774             530 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45169upu ultra-conserved element locus uce-4430,
            sequence.
ACCESSION   KCLA01002774
VERSION     KCLA01002774.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 530)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..530
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45169upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>530
                     /note="ultra-conserved element locus uce-4430"
BASE COUNT          107 a          121 c           79 g          223 t
ORIGIN      
        1 ttctgttttt ttcatggcaa atacagactt gatttgtggt cctttgtcct tttattttct
       61 tcttcagttt tattttttaa agctttacct gtctttttcc cttactttat tatctttctg
      121 tactttcttt tccccttaaa tactttactt attagctaag cctggcaaac ttctgccttt
      181 ggtttcaatc agtcaggaaa aaaacagtgg aacccacatt ctaatgataa ctgaactggg
      241 taagaagtgc ctttttcctt cacatcactg tcttatattc tgtggttgtt cttactgtca
      301 tcagcttttc ctttatttat ctggctgtat cagagaggct accctcatgg cactgctttg
      361 aatgcacttt atttgtggtt ctggttgaaa ttgactgtct tgttctggcc tttcttaatg
      421 attttttttt cacgcagcat cagtaaacct ttgatcacac tctcctgacc tgccggctgt
      481 tttcatagca ccttctcacc aattcatttt ctttggcctg agtacccacc
//
LOCUS       KCLA01002775            1010 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45184upu ultra-conserved element locus uce-2512,
            sequence.
ACCESSION   KCLA01002775
VERSION     KCLA01002775.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1010)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1010
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45184upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1010
                     /note="ultra-conserved element locus uce-2512"
BASE COUNT          302 a          211 c          121 g          376 t
ORIGIN      
        1 ttgaattatt tcttttatct cactggcagc tcttacacac cgatagatta ttcttttcct
       61 ctgactttac tctcttttaa cgttcacttt atattttgat atgcccactc tgattttctt
      121 tctgctaaac ctttcccctt ttctcattac caaaatacaa aatgcttaaa tgtagtttca
      181 aactggtttt atattaagca caataagtgt taaattcatg tcatgaaagt tgtaaattac
      241 atttgtataa tctcttctaa ggaacacatt agaatagaat aaaaacaatg cagcactgtt
      301 cgctgtctat ttcacaggca tgtatttaat taacttatgc tacttctaaa attcaaaaag
      361 cttaatcttt ttctgtcctt aaattaaact ccgtgcgctc tacaatgacc aaaacaaata
      421 atctatgacc tacaaacaag acacttgcat tccccaaaga tttacttcat ctcctctagg
      481 ttatacatct ttgaacctct cttttctgaa acgaccttct ggtgctcatt agcatgctga
      541 ttaccattag cacaactata atgcagcaat tttcttggtg tatgttaaag agaaatgctc
      601 atctgaatgc agtcaaggga caaaattaac cacataaatc tacagcacaa gctggatctc
      661 atctaacttt acccaagtct ttctctctct gctaggtatg acttcatcac ctttctaccc
      721 cctgatggct taataaatat ccccaggttc cacaagattt aatttaccct ttctctaaat
      781 tttacagttc cagggatgac tgaccacttt gctgtgtttt ctattcatat atatactttt
      841 tttttgcctc tcctatttag ttctcaattc cacatacttt ttttaaataa agattataca
      901 aatgttagtg tatatacatg tatatcagtg tcactacttt cgtgttttgt taaataattt
      961 gcaaagcaat ggaataggat attttactgc acagattatt ttgacttaga
//
LOCUS       KCLA01002776             949 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45199upu ultra-conserved element locus uce-6010,
            sequence.
ACCESSION   KCLA01002776
VERSION     KCLA01002776.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 949)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 949)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>949
                     /note="ultra-conserved element locus uce-6010"
BASE COUNT          211 a          181 c          233 g          324 t
ORIGIN      
        1 ttttttccct ttctgcctgt ctctgaattt atagatgcat gagggtaaag tgttgtttcc
       61 agagcagtcg atgttttgct ccaataaaag gagcaagctt ttatgttcag tggcagttct
      121 ggaatttttg agtaatcaaa tcttagcttt gattttttat tttttgtgtc agattcagag
      181 aaatattgta tttttctcca tagatagtgc acaatgtgaa aagggtgaca gctagtgaaa
      241 gtgttgatga caatggagcc tcttgcttca cttattaatg ctggtgatat gagaagcatc
      301 tggacctcaa ggccttggcc tgccgttttg ggaggcaagg agttagctgg ggatggaaac
      361 actggagttt gtgttctttc tgctctgtta cccattgcta tcttcatgga tctgacactc
      421 tgtttatctg acagtgcact cagtactgct tcgccaggga aaatcacaca aaacaagccc
      481 agtgcatcag cgttttcatt gtgtattaag ctgagcctcc cttcacatgg tcacatcccc
      541 tttttaatct gggattccat gtccttttcc cagtccagcc cgtttctgtg gtgtctgttg
      601 ctggtctccc cgagcctctg tttctgtggt ttgagtgttt tttgtgtggt tgagtgtgaa
      661 gacctgcagg acttttgcaa gtggtgttat tgggggctta ggtactggtc tagtgttagt
      721 agtttgtcac aaactgaggt gatggctgcg ttcaagttgg atttccttcc agagatgatg
      781 gtggaccatt gctccttgaa tgccagccct gtgtaagtat tatgtgttga catctgagtg
      841 tataactgaa gtgatggaat tgctatctca gaaacctctg cagtctaaga gactcacccc
      901 tcagagggag agataaggag agcctgtagt ttgttttctt gaaaacatc
//
LOCUS       KCLA01002777             728 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45215upu ultra-conserved element locus uce-1884,
            sequence.
ACCESSION   KCLA01002777
VERSION     KCLA01002777.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 728)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..728
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45215upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>728
                     /note="ultra-conserved element locus uce-1884"
BASE COUNT          258 a          125 c          120 g          225 t
ORIGIN      
        1 aagttaattt gcagggatat tcacatatgc aaatcatgtc acaatgctga aatgcaacca
       61 cgtaatgact ggaaaatgtt atacccataa atcatactac cccgatcatc aaaatttcca
      121 ctcagccagg acaaattcaa cagcctttat gtctttccag cttttagccc ataaaaaatc
      181 tgtgttttgg agagtgtgtt acactggtga tcttaaaact cccaagtctg gtataatgag
      241 tcctcaagtg cgttataact taccagtaat tacatttcaa catttctgct ttcagcagtt
      301 agtgttttat tcataaacat ttaaacactg aattaggcat aaaataagaa tgttggcaac
      361 aacccggctt aatttcatta actattaggt aaacgtagta ttgcttcttc aaataatcct
      421 tggtttgaat gctaaagatg taatgaactt cacggttcac agcatctgac attgcttaat
      481 taatgggtgc atttatagta catagggctc ggtaattgat ttatatgcat gatttgcaca
      541 tacagctgtt agttcctgta ggaaagtcat aattcacatg gctgcatatt tttgagatac
      601 ggcataaaat acagctccca aacacgtaga gttgaaaagg tatcaaagaa ataacgcagg
      661 aaaatataga aatattttta atattgaaat atttctataa aaaataggaa ataaaaagca
      721 caggaaaa
//
LOCUS       KCLA01002778             425 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45230upu ultra-conserved element locus uce-1468,
            sequence.
ACCESSION   KCLA01002778
VERSION     KCLA01002778.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 425)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..425
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>425
                     /note="ultra-conserved element locus uce-1468"
BASE COUNT          101 a          112 c          108 g          104 t
ORIGIN      
        1 gcggtgagag gtgccgaagc cgacgcgttt ctctccctgt gtcgcgcaga accccaacgc
       61 acaccctcgg ccgacctccc aggacctcgc cggcttctgg gacatgctgc agttgtccat
      121 agaaaacatt agtatgaaat ttgatgaact tcatcagtta aaggccaata attggaaaca
      181 gatggatcct catgacaaga aggtagaaca ttgtcgcttt tgtatgcttc atttaaaacc
      241 ctgcacgagt gccggacaga ttaaataggc ctctgcggca cagcgctggc gcccggcgcg
      301 caacgaagct cgtgtccagc tcattgcggt gtgatagcac tgtttaccta accaccaccg
      361 ggaattctgt ctgtactgtg tttcaggcgt atttttaagc caaatctgtc tctgtgaatg
      421 ggggt
//
LOCUS       KCLA01002779             876 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45246upu ultra-conserved element locus uce-4348,
            sequence.
ACCESSION   KCLA01002779
VERSION     KCLA01002779.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 876)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..876
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45246upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>876
                     /note="ultra-conserved element locus uce-4348"
BASE COUNT          261 a          204 c          169 g          242 t
ORIGIN      
        1 ttattgtgtc cagcacactt tctccctgtt gtcccaggtc actcggcact cattgaaagc
       61 agtgcctgac cacagtcaga ctcacatgta tgcactagga aacctccaaa ctttgtcctg
      121 gacctgacat caccccacaa gcccttgcag tggaccacac tctttccttt aagggaggca
      181 gctctgtcca ggttatgctg gggaaaggct cttcatcaag tgacttgata atgggggtga
      241 cccaagtctg gcaattgtgc cttatctatc tgcgatcata atccaggacc aaggctgccc
      301 ttcagtttgc tcctcccccc cattaaatta cattcaatca ctgcacggaa aatgcagccc
      361 atgcgctcgc agccagatgt tatcattaca gccttttctt ataaactgat gctgaaacct
      421 gagtggttga tgagactagc taagcagttg tacctttgac ccgattgcat taaacttgcc
      481 ctatcaattt aagcttagta taaacaccat ttcccagagt ccctcatgac ttcagtagtg
      541 agaagaagct gactaagcct aaacattttt taacagcaat cttgtcttac aacaccaagg
      601 ggatttgcca tgtatctggg gctttataaa accatatgaa catgctgaaa gaattaaagt
      661 cctttaaaaa agcaaaattg atggtgacag tccttttaga aaaccagttt gtagaatgtc
      721 ggcagaagag gagttagaaa caggattaca atagttttaa aattacagca gatttgtgtt
      781 tgcttcacac agttgctcct gagcgatgat atttaaagag aaaacaaaag aaagtatctc
      841 aaactgaatt catcactagt tgaaaagaac ttctcc
//
LOCUS       KCLA01002780            1167 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45262upu ultra-conserved element locus uce-1376,
            sequence.
ACCESSION   KCLA01002780
VERSION     KCLA01002780.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1167)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1167)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1167
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1167
                     /note="ultra-conserved element locus uce-1376"
BASE COUNT          317 a          224 c          252 g          374 t
ORIGIN      
        1 gcctagagga gaattttcat tccatgttta actttatggg aggaatctgg aagctgaagg
       61 gataattaat tctctctgca ggcagatgac tacgtgtact tggcctggaa gagggaagca
      121 gcatcgctcc accgacctgc taggagaaag accttcagaa cagtgcccgt gcctgttcct
      181 tgagctcacc agcaccgcag cgtcacgacg ggcttagctg tgcaccgaga ccgactttgg
      241 aaaccagaag gtctccaccg accgttcaca tgtaacaaag ggctcggaga gagagcagac
      301 tttgggctta ttgtgatttc ggttcccttt cccccgtttt tacctgctga acatttctac
      361 atgtttgacc ctttcatttt agctttacct ttctttgtcc cctgaatgac cggcataatt
      421 catctgatta tctattatct tgttattgga cataaatttt acaagctgtt gagagtgcgg
      481 aaaatcaata ccttttaaat gctgtttatg tgtgattaac ggttaatatc ctcacaaatt
      541 atttaatgta ataaggtcat ttatcttttg catgggcttg gtatcctgca aagaataata
      601 gaataataaa tgaggacact ggtaaagagg atatttcaga tgcttttctg tgccagtttt
      661 attacccata tcctctttac agccacaaag ctgcactatg gttattttat gcaagtaata
      721 aaattagcct gagatggaat tagcagactc ggggctcttt ataggtcaag tcggtgcttt
      781 atgagcctgc gactccctag tgctatcgtc atgaggctag ttagaggggt ctttaagcat
      841 gatttaatat gtccatgctt cagaaaatag ttaaatagct aattaaatgg aggagttaat
      901 ttacatatta attgaccttc cagtaatatt tatattgata cctacatgag aagcccttgt
      961 cttcattgcc tttcatcata gttagtctga gcaaatatgg tggaactttt ttgtttaaac
     1021 tgaagtttct ctttattgtc acaggagagt tgttgtattc ccttgaatag catagtacat
     1081 ctggcctcaa gtttatgcat ttgctgaagc cctttgttgt agaataatta ggaaacacag
     1141 gcaaatacgc agagagtggg gggggtg
//
LOCUS       KCLA01002781             649 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45277upu ultra-conserved element locus uce-7351,
            sequence.
ACCESSION   KCLA01002781
VERSION     KCLA01002781.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 649)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..649
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45277upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>649
                     /note="ultra-conserved element locus uce-7351"
BASE COUNT          209 a          109 c          134 g          197 t
ORIGIN      
        1 agtttctgta aaggcgtctg tttgggtgag atgccttgtt gtctgcgatg gataataagg
       61 caactctgtc taatcttgga gaacaatcaa cccatcttga gaaggtgact gactacgtat
      121 gctcttgccc tgacagcact agaacaatgg ccccataatg cacttgactc agctggtaat
      181 aaaatctact tttgattagc agccatggct tgtgtcaatc actgcatgat ataccattgt
      241 cctctggtcc tgaacacagt ttatttacag ggaaacaaaa gctttttgga tatggctgct
      301 gcccagagat tgcaaaatag attgagctgt cagcttcaca cactagatga agattaatga
      361 gttgtgcaga caataaatat gaagcaatga ccataaatat gctaataggt attatccata
      421 tacactgtaa ttgctacaaa aattaaaaag tagtttgaag gaaataggtc acaaggtgac
      481 agagagataa tcttggatgc tgaagatctt tgattcagtc agattctcta caggtttgtt
      541 ttcttcaatt agacccttca aaagagtaat tgtttaaaaa ctgtttgaat aatctctttt
      601 gaaacagagg tttatgagaa aatgttgatg aaaaagttac tttggcgaa
//
LOCUS       KCLA01002782             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45292upu ultra-conserved element locus uce-6915,
            sequence.
ACCESSION   KCLA01002782
VERSION     KCLA01002782.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45292upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-6915"
BASE COUNT          219 a          102 c          110 g          178 t
ORIGIN      
        1 cacccattac atgtatctgc cccagagaaa caagttaatt attaaataat tttaaagaaa
       61 agttttcctc agcaatacta acacagaaaa gttaccaaaa attatgtttg atggactaag
      121 gtgggaaaac gaagaatact tttataattc tatctaaatg cttttttttg aacataagca
      181 aaaataaaaa cacttactgt gtagcttttg aaatacaaaa caatcaaagg taatccttta
      241 aaattagggt tcagattagt ctctgcaaag gatgctgttt aactgaaaca tctggtagtg
      301 ttacgttgag agacaggcct ttttaacttt ggaaatgaga ttagtagatc agttatttgt
      361 aagtgtccaa gtaatttcta attattttat ctgggtcaca gataatccgc ttttacaggg
      421 ctcccacaat gacatcagag gatcactgct gaactgatta tcctgttacc ttccaccatt
      481 catgggaaga caggattttc cttttgtaca gaggaagaga aagaaatggc tgaccgcttc
      541 agaccagtgg cagccaatga aataaagaac acaacagatc tggagaggaa gaaaacctta
      601 tatgtacaa
//
LOCUS       KCLA01002783             566 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45307upu ultra-conserved element locus uce-6232,
            sequence.
ACCESSION   KCLA01002783
VERSION     KCLA01002783.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 566)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..566
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>566
                     /note="ultra-conserved element locus uce-6232"
BASE COUNT          193 a           94 c          111 g          168 t
ORIGIN      
        1 atagctataa ctaaaagaac actattacac tgaagttgta attagagaat tttgtcttca
       61 aggaaagtca ccttgatttt taaaactaaa aggtcctggt tgatatgcta attgtgttgc
      121 atctctacca gtaaatggtt gagtaagttt gtaagcactc ttcttaagta gttcacttga
      181 agttcttcct tttttttttt tccccggatc cccctgaaca gagttggttg gtcaagttga
      241 tctcttgctt gaaattcaat caagggcatt aaagtgtaaa ccagttggaa aaacaaagag
      301 cttagggaaa tcatttgctt aaacaacaac aaacaagcac tggtaatctt cttacagaaa
      361 ttaatgaagg gaaaaccccc tcagcttggg tggataatga tcctcagcta tcatgtaaca
      421 agcctagaag gtttagggag aaggtgaaaa ttaagaaagc tggattaaag tgaacttgca
      481 gaggaacaca aagaaactca ggataaagat cacttcttcc aatctgtgat tgaaaagtag
      541 ttctaaactg gaagagctta atcctt
//
LOCUS       KCLA01002784             942 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45322upu ultra-conserved element locus uce-3304,
            sequence.
ACCESSION   KCLA01002784
VERSION     KCLA01002784.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45322upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>942
                     /note="ultra-conserved element locus uce-3304"
BASE COUNT          319 a          159 c          208 g          256 t
ORIGIN      
        1 ttaagtaaga ttttgatacc tttaaaagct gggataaata attatataag taatataaag
       61 tataagataa agtgtggact tgttttactt aaagctctct accacgtggg gaccaaagga
      121 gccggggaga tttgtcgggt tttttgcttg gctgcaatat caaaactggg ttggtttaaa
      181 atatttataa catgagagaa agaaaatctg tgaattactc aggacttaat gtatgtactc
      241 tcaatatgtt ccacattttc tttagttggg gacagaggag tggggaattg aggataactt
      301 gtgtactgcc aaacagctct ccatagtacc tagttttgct ctgtattaaa aatcatggct
      361 ggggccaaga atgctggggc tggaattaaa gacaagaaca tgcagtaact ttaagtaatg
      421 gcagagagat ttaaatagca cacatcagca aaaaagaaca gggaaaccta cagtacactg
      481 acttcattga taccccattt atcagcaatt actgactcca ttaaaggcag agtttacagc
      541 agacagagaa acagagccta aaatatgtcc caacagatgg acggagagtg tcagtgatgc
      601 cgtatttcaa aggcatctgc aactctgtta tcattgtaca tggagtcaga aagacagcga
      661 aaaacactgg agtaagggcc agcaaatgat ttacttgacc ctgcatgggc agaactgaca
      721 gcaaaaacct cattaattcc tcaggtcatt ctggaagaca ttaatttggt ttggactcag
      781 gatgagggga gattttccag acatacacca ggaattatga aatctctata gccagaggaa
      841 agtatgtcca aatcactttc tgcataaatc aagctgactt tctgaagaag gataatatgc
      901 ctaatcaggg gagttatgga acttcttgta cttattagac ag
//
LOCUS       KCLA01002785             856 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45366upu ultra-conserved element locus uce-2389,
            sequence.
ACCESSION   KCLA01002785
VERSION     KCLA01002785.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 856)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..856
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45366upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>856
                     /note="ultra-conserved element locus uce-2389"
BASE COUNT          276 a          189 c          155 g          236 t
ORIGIN      
        1 tttcacacca acatcagtgt aaacactgcg gagatgtggt aaaaataagg ttgttattgt
       61 atacttttta aagtgctcat gtaaattaat actctcaccc tttaacagat ttagtcacat
      121 tggaattaat tcagaaaagc aacaagttga agtttcaaag tacacttagt gtatcttatg
      181 ccactcacat tttcagccag accacccaga gcaaagaaaa gaaaaagcca caacaaaaaa
      241 agccctctgc attgtttgca ataatatgga aggaaattga gtgtatattc tcttcttcct
      301 gtattttcca gctagattaa gctgttgtct tcacaattgc ctcccagctg ctgtgacttg
      361 tggaaacaac agaccctgct ctgttgtctg cagaaagcct ggattgttat tcataacttt
      421 attgcaggca catgagtgtg ttaagacttt aaaacacgct caaatgtcat gtgcacaccc
      481 agtgacgggc aagaataatt atgaaaaaac aagaattcta tgtctacgaa acagtgtcag
      541 acaaaacggg ccattcattg tgttcctttg ggaatgctcg gactctccag ccagaaaaca
      601 aaaaaggcac ttttttcctg ccgtaggctg aatacttagc tttgccatct gagccctaag
      661 aaaacatggg ccccctctct aagtactggc tggcctgcac acagtaaaaa gtattaatgc
      721 cccccttttt tccagcagtt ccctctgtgt aggctgcggc caatgtaaag tcaatgcaaa
      781 gacaaaacag tttgcctaac attagcaaaa aaaacataac tcttgtatag tctgaaaatc
      841 cctctgacac acagag
//
LOCUS       KCLA01002786             778 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45381upu ultra-conserved element locus uce-4097,
            sequence.
ACCESSION   KCLA01002786
VERSION     KCLA01002786.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 778)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..778
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45381upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>778
                     /note="ultra-conserved element locus uce-4097"
BASE COUNT          287 a          134 c          129 g          228 t
ORIGIN      
        1 tttttttttt tcctgtgagc acagatttac cagtatggtg gaaatcagag ggtttttgag
       61 ggtttttcta cagtgtattc aaagcaatca taaatcaagt ctagaattca aaaacgttta
      121 aggacataga gagtaaaaaa gactgagtaa ctttaaccta gaactccaat catttttaaa
      181 gtaagtggga agaacactgg tcaactaggc gattgttggt atcccccaaa atgtaatctc
      241 caagctgaag aatggcagct ggcagaacag ctggtgaata ggattaatgt cagaagaaag
      301 aaataaaact caacatatgt ccaagcctgc ggtgctggga ctgagcatga ttgtaccccg
      361 acggatacca tgtgtacagc tggaaagcgc cactgtgcca tgcttctcta cctcacaagg
      421 tcatttctaa gaagtatagc taatatctga actaaacttt tccttgagaa ctctgactga
      481 taaaggaaca aacaaacaag attcatagtg caaatatttt gagctatttt aacacactct
      541 gggtgttttt acataataga atactaaaaa agcagattag tattaaaata gacagattgc
      601 actaacataa atataatttt aaagctattt aaacctttta atctcatctc attcagattt
      661 ccacattaaa ggttcaaata ataccaaaat cactagtttc attaaataaa taatttcatt
      721 catactactt agatatctta ctaaaaataa attttaataa acagcatgca caaacaga
//
LOCUS       KCLA01002787             812 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45397upu ultra-conserved element locus uce-5601,
            sequence.
ACCESSION   KCLA01002787
VERSION     KCLA01002787.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 812)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..812
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45397upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>812
                     /note="ultra-conserved element locus uce-5601"
BASE COUNT          170 a          222 c          184 g          236 t
ORIGIN      
        1 tttccaggtc ccttcccatc cctagggatt ctaaacgtgc ttggttcagg tcacctttac
       61 aaacacaaag caaagagcag cctctcagct ctgttgtagt gagggtgtgt tgcctgcacc
      121 gtgccatttt ctttcccctt ctgccgagct cacgtacagt cgggcactga tgtcagcctg
      181 gacagtttgg gtggaagctt tagacctccc caaactccca tccttcctaa caaagctggc
      241 agccgtgtcc tttggcagca gctgctcgcc atgtgattta aaacttcccg tcactataat
      301 tgatgtgttt ttattctttc cacttcctga agcctgatca gaattaaaat tgctcttgga
      361 atttcctgtc aaagcaactc atttatccgc cgagcgccgc actgacacta ctttgattgg
      421 gcatcgcctt cagctatgct ggggctcgcc gtgagttacg ctccttgcca gggcttgact
      481 tccccgtgtg ccacatctgc gaacgtatac aggttgtcca tcacggggaa accttgtcct
      541 aataaaaact ccacatgtaa aatgttaatg atttgaatat cgagcttggc cacctgctgg
      601 ggccctggct ttcgtgttta tttagggaac cccacagagt ttttcaagtg attgtctagc
      661 tggaacctag agcagcctag caaaaggagc tctgctgtat ttcaacggga aggaggattt
      721 acaccctctg ccagcgttgc cttgaaaaac ctgatgggtt tggggggtct tttccccttt
      781 cattctctgc tccgctgtgc gcgctgcatt cc
//
LOCUS       KCLA01002788             952 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45412upu ultra-conserved element locus uce-889,
            sequence.
ACCESSION   KCLA01002788
VERSION     KCLA01002788.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 952)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..952
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45412upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>952
                     /note="ultra-conserved element locus uce-889"
BASE COUNT          293 a          167 c          197 g          295 t
ORIGIN      
        1 ctggatgaag ccaaagcagt ggcaacctct gggcaatgta attgcaagat aacaggcacc
       61 aaggttaaat taaaaacagc caagaaaaag agctctttgg gacatcatgg agcttctctc
      121 aaacagtcca tcaaggttat gagtaatgta tttgagaact tcagtaagga cagctgggag
      181 gatgtgagtg aaagcaggta cggctctcat taacttagcc ctgtagaggg gacactgtgc
      241 atatgtaaag tactagcaaa tggagcttga atttcaacta ctgttgattt ggtattcaaa
      301 aaaaatactg tcagatcctt tgaaatatct tgggaggtct tgttctgagc ttattgactg
      361 aaatttgcat gcaaaattag ccacaactgc atgagtattt gaataggtgc caggaaaccc
      421 aaaagaaggc aatgcttgat ttcttccagt gatgctattt tcatgcagtc atgaggcttg
      481 aaattgacag tttggcaggt tgatttaatt tgctggccct ttgcatattc accactgaca
      541 gctaaggatt cccaggcaag cctactaagt cagcttagtt atcttgtgac atgccaacct
      601 gggaggagaa acattttttc cccttaattt agttagataa attttgaatg acccatttca
      661 gcttgctagc agatgtctac aagctgttta acatccttta aattaagaac catccacact
      721 aattatttca tgtatgtttt atgcacagta attttactaa ctttaatgga atgatggtta
      781 aaaaacagtt ctttaaaggt aattgttact gcatagagtc ccagtcatga gtcactcaga
      841 aaactgcact tgcaagcatt atagatgttt agaatttttg cttctaattc tgtttgttct
      901 cacatattga ggagtcagca gtaagttgct aggtaaatgg ttatcatgtc tt
//
LOCUS       KCLA01002789             949 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45428upu ultra-conserved element locus uce-7277,
            sequence.
ACCESSION   KCLA01002789
VERSION     KCLA01002789.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 949)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 949)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..949
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45428upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>949
                     /note="ultra-conserved element locus uce-7277"
BASE COUNT          244 a          242 c          214 g          249 t
ORIGIN      
        1 ctctgggtaa acccacggtc tccacagacg tgtgcaaagg tacgttttca tctggagcac
       61 aattccactc ggaaacacac gcatcgcaac cggccgtaac cgaagaacac cgcggcgcct
      121 ctattctaat taaaaagtca tctctgctat ttaattgagg agcccgcaaa cttgcaccag
      181 catggccgcg acccgcacga gccatttacc cagacggatg gaaggtcctt caggtagcgc
      241 ttcttaaaat tagcattaag cgagcgaacg atgcgccgct cgctatgcat tgaaacaggc
      301 attgtaccca cttattaatt tgcactcttc gcttttaaat gcagcaaata cctcattaat
      361 ttaattttag gtgcccacca gtttatattg cattttacag tctggaaggc aatttactat
      421 taactggcaa ttacatacag aatgattgtt aattctgctc ctaagtgcta gctgcttgaa
      481 aattgttatc tctctctaat ttttgacctt cttacaacag gggtgaggta cactgggaat
      541 acaaaggact agtcgagaag agctggacat gtcatttgtg actcattctt ttaattcacc
      601 gtgctaatca actgaactgc cacagcctcc caaggtaatt gtatctttat aatagttgaa
      661 agcgccgggc aaaagggcct ggatagatgg ggaaaggcct ggccttcgcc tgctgagcac
      721 cggcgcgctg gagctggcgc gtgagcctaa tgggggcttg tcagaagaat ctggaacttt
      781 catatccctg gaccccgctc gccccgagcc tcaagttctg tgctcacaaa ggctttgtgc
      841 accacactac gctcttgttt cattattccg cagcctcgtt gccctatggt ctaccccacg
      901 ctgggaaggt taaatgttag agtgccaagc cagactgcaa gcatggtgg
//
LOCUS       KCLA01002790             575 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45444upu ultra-conserved element locus uce-6136,
            sequence.
ACCESSION   KCLA01002790
VERSION     KCLA01002790.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 575)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..575
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45444upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>575
                     /note="ultra-conserved element locus uce-6136"
BASE COUNT          159 a          153 c          122 g          141 t
ORIGIN      
        1 ggacacgaca gccctgtcgt cgcctgtccc cccaccacga cgcgccatca catctgagcg
       61 ccaggcaact gtttttgtca cttgctttaa gacgctcctg cctggtctcg tttcattacc
      121 caaaatccca gagaaaccac ccggcaggat caatcagtca caggcagcca gacagttttc
      181 ttgtacttta ttaaagtgta atcaaacatc ggttaagtgg aaaataaata tccagatcta
      241 ataagctgct cagtcagatc gtgtaaatgc aaattacaag ctggttccca tctccccgcc
      301 gggggactga acaagccgca gcaatcgctt catccaccgc gactgtaaat caactaaaat
      361 aatggctgga taatgaccag tttgcggttt caagcagatt gaatgataac aaactgcgtg
      421 tgtcgcacca gcttttcatt tagcatctca tcatggagcg agcagctcgc ctaacagctt
      481 ggctgcctca ttaggttgtt gtctgcggct tgtaaattca ggctgcagcc agcagattac
      541 ctgacaaagt tcctgatagg gaaaaactag acaat
//
LOCUS       KCLA01002791             810 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45459upu ultra-conserved element locus uce-1085,
            sequence.
ACCESSION   KCLA01002791
VERSION     KCLA01002791.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 810)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..810
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45459upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>810
                     /note="ultra-conserved element locus uce-1085"
BASE COUNT          213 a          191 c          165 g          241 t
ORIGIN      
        1 ctggcagatc cctatacaag cacagcatac gtgtcgtcca taaaatccca ggcatgcaca
       61 tatctggaca catgcacaca cccccacact ggggcctttg tacatttatg tttatcaaat
      121 aggcttaata cagggcaaag ttccctttgc ttgctacttc ctgacatttc cgaagaaaaa
      181 atgccctgct gcaacctcag ttaaataact gagtgattaa tttaaaggat agaagaaaaa
      241 cgtgtagggt tgctgcagtt aaggaattag catgccttcc ctctgtaaca cagctcctct
      301 ccctttctcc ctgtcagtcc tgtggcaccc tccctgttct gtgttttaat tccggtctct
      361 aatctcagcc gctcctgtga taaattaatt gtaatgatag aggccccagt tacaaggttt
      421 gcaccgtttg cttgtaatct gagcgacagg tttagggcct gctttattta agatgcgagg
      481 gtaattacat gggagttagc atatgcaggc agggagatat gattcattct cccagcgacg
      541 gccatgacac agctgtttgt cggataaaat agaggaaccg tgttgttaca aaatgttccc
      601 cttattatac ctcattaaaa acaaggctgc gataagtcag acctggcaat gaataaaatg
      661 tattgccccc tgtaaaagct gataggagag aaagagggtc ttccaagcag cctcaggtca
      721 tttatttgtt ttttgttctc tttcatgctc cctcttcttt ctttctctct gtttttctgc
      781 ctcacactgc ctgctggcga gaagaaaaat
//
LOCUS       KCLA01002792             270 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45473upu ultra-conserved element locus uce-2135,
            sequence.
ACCESSION   KCLA01002792
VERSION     KCLA01002792.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 270)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 270)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..270
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45473upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>270
                     /note="ultra-conserved element locus uce-2135"
BASE COUNT          103 a           47 c           21 g           99 t
ORIGIN      
        1 taattgacaa ctaaaacaag taatttattt tttttaatta actgctctaa ttaacaagga
       61 aatcatcctc cccctgaatt agtttatcta attttcatct ttattcaaag ccaaatgaca
      121 atgattaatt gaaaatttaa taagccgtaa ttattaactt ggcaaaccta gtaccaatta
      181 acactctatt aaaactaact atgacatttc attcaagtgt ttgcacttaa ttatttcatc
      241 cacttaaaaa acaccttaat taaatgttat
//
LOCUS       KCLA01002793             249 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45487upu ultra-conserved element locus uce-5786,
            sequence.
ACCESSION   KCLA01002793
VERSION     KCLA01002793.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 249)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 249)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..249
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45487upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>249
                     /note="ultra-conserved element locus uce-5786"
BASE COUNT           77 a           46 c           58 g           68 t
ORIGIN      
        1 actttgtact ccgtgtccct tctgattcca ggtaggaagg aaaggctggc gtaagaggag
       61 ctgagcttgt acttgatttg cagagcagcg tgatggtcgg ttgggctgcg ttggcagcat
      121 ggacctgtgc cagacttcac cacaattcat actgtgtcag tttaataaat gcactactta
      181 aattatgaaa ttacaaaaga aaaaagagaa tgcacttatt cagactctta atacattaaa
      241 aataaggca
//
LOCUS       KCLA01002794             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45502upu ultra-conserved element locus uce-3605,
            sequence.
ACCESSION   KCLA01002794
VERSION     KCLA01002794.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45502upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-3605"
BASE COUNT          259 a          147 c          155 g          226 t
ORIGIN      
        1 tttggtttca agagatacat gctatgaaag catacttttt aagttacaga gaataagtag
       61 aaatactaaa taataactat ttggaagatg cattttcaca tattgaactt aaaagctcaa
      121 agactattca attccatgca cagagctgtt ctgaaagcca cactgaatat attgcctttg
      181 cttgtttagg ttatgcacaa atgaatattg ggatgacagt taaagacaca tccttgaagt
      241 agtctaccca ataaatttgg aaggagaatg aagaggaaga agaataaaaa agtctagctg
      301 tataagattc tctttgttgc ctgcttgtta aggaatcctt ctggcacaac tgaagggatt
      361 atgaattcac atgtgaattt atcccctatt aaacttttag taacagggtc agttagcagg
      421 aatgataaag ctcaggcaca ctagtcacat gctggcagag catctgtgac tagctctgct
      481 caggcatatc actggtttat agttttaaca tcaagaggaa gctatggagg agggcagaaa
      541 acaggaaaag acttgaaatg gtgcaaagta gtttcacatg aaacaaagtc agcatgactt
      601 caggtgactt tttgtgaagg gagcactaaa aacaaagtcc aggctaatct tccatctcac
      661 tggcactact cccttaagac ttgtgtacta ttttggcttc ctcttttcca ccactagaac
      721 tccagctgtc aagcttccat agcttccaag caatgcttct ggactaacca tcactgctac
      781 atatgtg
//
LOCUS       KCLA01002795             603 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45518upu ultra-conserved element locus uce-3077,
            sequence.
ACCESSION   KCLA01002795
VERSION     KCLA01002795.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 603)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..603
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45518upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>603
                     /note="ultra-conserved element locus uce-3077"
BASE COUNT          179 a          127 c          107 g          190 t
ORIGIN      
        1 gctttccctc cgggaatggc tgtcctcaac tagacccata cagtgctccc ctccagtaag
       61 gttagcagtc agaaccatag gggtatctgt gccccctatt ttccttcgcc caaaaagctt
      121 cacctttgca aatttaaata taatttctgc ttagaagtca aaatgctcat catcatccta
      181 gtttgactaa agatgtaagc tggagtacgt gagctgcata gagtacattt cttgctcaga
      241 aacacaaaca gctagccagg ctctaagtat attatcaggc aagttctttc agaaacgtat
      301 tgctaaagaa gcttaacatt aattattgta actttgggaa gattacatcc acactagcct
      361 tgtaagaagc agcatacact tcttgacctc caatgctaga gctttaagac acaagaatgg
      421 cattttacca actttaatgg gataaccagt attaatcttt cagcagtaag ggaagaaaaa
      481 gtgtttagag tataataccc ttctgagttc tcatacaggc tgcctgttgt gtgtgctaca
      541 atcataattc atttgtttct ctcccttgtt ttggttttgt ttcttaatta tttaagaaga
      601 aat
//
LOCUS       KCLA01002796             954 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45534upu ultra-conserved element locus uce-249,
            sequence.
ACCESSION   KCLA01002796
VERSION     KCLA01002796.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 954)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45534upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>954
                     /note="ultra-conserved element locus uce-249"
BASE COUNT          296 a          225 c          205 g          228 t
ORIGIN      
        1 ccccatccaa gggatctcct gtaaatggaa aagatgaggg aataactcag aggagaaacc
       61 tctcaatggt cgggtacaat tatcctgagc actagtgacc agagcaaaac acaccaggaa
      121 aaagcttcac taggggcaag agctgtgcta cagacctgga atgcctcctg tcatttctac
      181 caggtgctct ctgtaggcag ccctaccaaa gcaattctgg ctggtccatc agcaggaagg
      241 aggtaacgta ggtagcatca gcaccagaga aattccttaa aacgtcattt gtcaggggaa
      301 aggaggacca aatcatctcg agaggagtgg aagccgacaa gtccaaaatg gtagctccac
      361 taaaggcttt aacgcactag aaaactgatg aaaacacgaa taaaaggtaa cttattcagt
      421 gccagcctta catatttata gtttaaaaat tagtcaaagt ttatgtcccg aggttgcacc
      481 tacaggaagc cagatgtgtg ccttctgcat gtgacctaag acaggcctga agcaacaact
      541 agataatttc tcgctcatac tccacaccgt cgatcgcggc ggctttctga ggtgagagaa
      601 tctgacagca ctaactctcc agggcagaac tttccagtca agtggatcaa cggactgaaa
      661 atctcttatg aatagtcatt aggccttcat tacaaacccc tcacaaccca gttctctttt
      721 cgcaaccaaa tgccttttgt catcttcaca aggtgcatca tttaattacc aattgatttc
      781 tttatatatg acaacatgtc agatagcaaa atacagtgta tctcccttag ggggagaagt
      841 ctgttaacta tcagcgtgcc agattactga atttagctgg aagacagcta ttccctctac
      901 tgcgccttta tttcaatctc cagaggagca gcgcgaaggc aaggagcatc gcaa
//
LOCUS       KCLA01002797             399 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45550upu ultra-conserved element locus uce-4294,
            sequence.
ACCESSION   KCLA01002797
VERSION     KCLA01002797.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 399)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..399
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45550upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>399
                     /note="ultra-conserved element locus uce-4294"
BASE COUNT          107 a           92 c           85 g          115 t
ORIGIN      
        1 gtgtttgagc agcggatttt acctaccggc gctctgcgtc gtccgagtcc ggctaagaaa
       61 aaccggtgag attgttcaat gggagcttca cctgcctgtc tgtacggcgg ggtctctata
      121 gcaaccaccc ataaatcagg gaaatggccc cttttgtaag ttggttaata ggcacaacat
      181 gcttctttag aaaacccaac cattctttca atagactttg attgaaagtc agccttttct
      241 acagacacat tcacattcac atctagtagc agcttgtatg gctgtcccgg gtctaattta
      301 ttacccttta aagattgggc gaagaaaaaa tgcttcttgg aacaatgttt acattcagag
      361 gcataagcac tgtgccacaa aagagcatcc ttttgttct
//
LOCUS       KCLA01002798             808 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45564upu ultra-conserved element locus uce-1306,
            sequence.
ACCESSION   KCLA01002798
VERSION     KCLA01002798.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 808)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..808
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45564upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>808
                     /note="ultra-conserved element locus uce-1306"
BASE COUNT          222 a          146 c          199 g          241 t
ORIGIN      
        1 cacaagagaa gactgttggc taacagtctg gaggctgctt cgtttgagct aaccaccaca
       61 tgaaaacaaa tgcgatccat catatttcat taactagctg ccccctgttc gggtgccctt
      121 ttttgatgtc agagcgcatc ctgacagaaa tcaggaagat ccgtgtgatt aacaccagta
      181 ataatcgtta gcgcattgta ttgtaaatta ccttttgggg cgcagggact ttatcagccc
      241 cactggcctt ggcttgggta catttttgac tactctgtat atacagtgta ttagcgcaat
      301 ggagatcatt atgtggcctg tatttgagtc atttttattt aagatgccaa acaataagct
      361 gttgattggg ggaacaagag gcgaacaata atgttctgtg tcacataata caccaccatt
      421 ttccagcttt gctttagaag ggccctcttt attgtttttg tataaaaatg gttcttagga
      481 ggaggaatat tttgctgagg tatgtcatta ttttgcaaat ttctattatc tcatcatgtt
      541 gtcttcattg taaattgcag ctaattagga acctagttag agccccagct ttgaggctgg
      601 cttttttgtg aaaagagccc accgattacc gcactacaag agaggaaggg agagaaaaag
      661 gagattaatc tggttaccta ggcgacactc gcttccatct gcgaggaaca atacattttt
      721 gtttccttgg ctcagttcag atctgttttg tttagggggg aaaaaagaga gagagagaga
      781 gggagagggg gagggagagg gaggggga
//
LOCUS       KCLA01002799             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45594upu ultra-conserved element locus uce-6161,
            sequence.
ACCESSION   KCLA01002799
VERSION     KCLA01002799.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45594upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-6161"
BASE COUNT          193 a           96 c          134 g          185 t
ORIGIN      
        1 tgttttaaag ctgtcaaact acttcattgg atcataggct gttttttgtt ttgcaagatt
       61 tattttgctg tgctataaat taatgcacgt gtatcagtga caatctttgc tgtgggactg
      121 ctgactttat actctaaggt agtcaggcat tgagtataaa tttcactgac ggactaaaag
      181 tgcagaggaa atgagtgggt aatgagagca gagcagccag ttctttaatt gaattaaaag
      241 ccgggtgaca ccaatgcaga cacctgtcca attacagaca gggcaaggtg tttaccattg
      301 ctgtacaagc gatttgaaga tgacagaaat ctttccgccc acagattaac ataatgaagg
      361 agaacagatt acagtggatg ctggccaaac agataggttg gcagctgaga aaaaagtagt
      421 ttgctgaagt atgtaaataa aatctgtgca ctttctattg cctgtgcatg caacacatct
      481 gtttctttgc tgaaagaaaa tagtgcaaga atacatagga aggaaaaaca ttaactgaga
      541 aataatctgt taatgtttta agttgccatc tttttttttt gacgtagacc tgttgcaaac
      601 aagtttgt
//
LOCUS       KCLA01002800             848 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45608upu ultra-conserved element locus uce-3281,
            sequence.
ACCESSION   KCLA01002800
VERSION     KCLA01002800.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 848)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..848
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45608upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>848
                     /note="ultra-conserved element locus uce-3281"
BASE COUNT          248 a          149 c          156 g          295 t
ORIGIN      
        1 agatagtaga tgctatgtaa tatggtgtgg accaaaatcc ttcagtaagc ttccactaag
       61 ttgctagata aaaagttact ttaaaaaggt tgttcaagat gtggcatgtg agaaactttt
      121 tttctagaag gggaaaagta aagtagcagt atttgaaagg acagacagtg atgtttgagt
      181 tatctaaaag atagaaaaag ctcttcaatt tgaaactgca atttgtagca gtgttgcaaa
      241 tattcagtat tagtatctta tgacaacttc ctgccgtgtg aagctctcct ctcactgtct
      301 tctctaacct gactccctta gcgcattttt atggctttaa tttaaacgag tgcttcttga
      361 tatcttgttt acaaagctgc caaagtgaaa aatacctgta ttatatgagg cttgcagttc
      421 cagagttatc tcagcactac aacacaacat cattatccag tctgcccctt atcactcagc
      481 tggtaatatg gactaccgag agacttgtgc cacttttgtt acagctttat atgctcaggc
      541 ttattggaga tatcttgctc tccaactttg taaagatctt aaaactggtg caagtctgag
      601 actgttctcg aaagattaga ttctgtttag tgatttttat ttatttcttc cttgcagcaa
      661 taggtgaatc gtagaaagta actttattta ttttactgtc ttgtcaattg aataaaaagt
      721 gcattgtgag ctgctaagga tgtagctctc tggaaaattg aacaattaat taataatgct
      781 gttcacaaga ctccatccat cactttctgc atgctttttc tgtttgcttg tacaagttgt
      841 catattct
//
LOCUS       KCLA01002801             960 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45623upu ultra-conserved element locus uce-2952,
            sequence.
ACCESSION   KCLA01002801
VERSION     KCLA01002801.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 960)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..960
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45623upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>960
                     /note="ultra-conserved element locus uce-2952"
BASE COUNT          338 a          174 c          170 g          278 t
ORIGIN      
        1 atgcaagaaa tcacaccatc tttgatgaat ctggaaagat attagcattt tgttactagt
       61 acaagatatc caagcaagca gtgcgatttc agtgatatat ggaaggggtc ttagagaaac
      121 acgcaaaaaa aaatatgact ataaacaagc catcattctg gtaagaggaa atacaaacaa
      181 ccagataaaa atagttgatg cacaaaagcc ataatgaggg ggttgctcaa aaaataactt
      241 ctactttgaa tggtttggat gaaatacaaa ttatccacag aaaagtgtgg actggcataa
      301 atgtttgtac aaaattataa gtatatttct agaagtatgc aagagacaac cgcctgcatg
      361 ctgcacaagg tcccaacaac gttctgcgta agtgctagtg cacagagtcc aaaccgctgc
      421 attttaatta ctatgcagcc tcagatatat tgcctttgat atggaaatgt tcttgttctc
      481 tcatcttcac atacggtctc atgcacagaa atctttatct gattcataaa aaataaacta
      541 gaatccaatc tcaacacctg acctcagtgc ttagaagttt ttcactaagc atggtgtcac
      601 tataaaaaga atgggtaata ctggtgtaaa gttaggtatt tggagcaatg atatgaagga
      661 tttgcagttc caaatcaaat caatactgca cctctgaggt tttagagctt cctgatacct
      721 tatgtccgcc taccagtggc tagagaaaca attgactgta cacctttctg tctacctcaa
      781 gaagaaagga aaaatattta aatgacctcc tgtctttctg tcaataaaaa agatataacc
      841 tagccacttg ctgtatgaaa tagttcctga aatctaacaa atcattaact aaactttctg
      901 actgttgtta atttgtacgt catttttgtg catctaataa aggtatgact gtaaaagtca
//
LOCUS       KCLA01002802             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45638upu ultra-conserved element locus uce-3549,
            sequence.
ACCESSION   KCLA01002802
VERSION     KCLA01002802.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45638upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-3549"
BASE COUNT          203 a          109 c           90 g          175 t
ORIGIN      
        1 tttaaccttc gaagacacaa aagacatgga aaacccatac agagtcttaa atgctaaata
       61 ttttctaagc agctatgatc tacttgccac attagagttg taaattaagg tctcatgtat
      121 tgcagaaacc agccttccat atcacagttt tctcccctga atgagacaag agtcagtcag
      181 taaatatatg tggtcaacct cagatttgcc tcactgggag ttcacatgta tttttaactg
      241 ccttcaattg ttaatgtatt cctcaaatga gatgcatcac cttgaagaat gactttttgc
      301 cctctgggaa tatgccaaac aagtatttca ttcactatga taatcagttc tacctccagc
      361 aacatatgaa acccaaattt aataggcact agtgattagg ttttaagaca cagagtcatc
      421 actgtccact gtaacaataa taataataat aatatagaaa agccaggaga gaaaaatgcc
      481 atatttgctt ttaggaatca ttaatgattg caatgcagca attaacattt tggaaacatg
      541 cttagtaaat tccatgtttc tagtcattaa agaaaaa
//
LOCUS       KCLA01002803             934 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45653upu ultra-conserved element locus uce-3477,
            sequence.
ACCESSION   KCLA01002803
VERSION     KCLA01002803.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 934)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 934)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..934
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45653upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>934
                     /note="ultra-conserved element locus uce-3477"
BASE COUNT          270 a          170 c          184 g          310 t
ORIGIN      
        1 tttaatctat cacagttcaa tggcacagtt tcttacagtt tctcaaagta acagcagtga
       61 ttgcagctgg gatgagtatt tattattaat actgcattta ctatcccact aaattctttg
      121 agacaatgaa ccgttaagta gtatgaggct gactgaagtg ccttcaccat ttaggggtta
      181 gcaactaaat ggcattatat aatttgagtc aatttctgtc catgattctg gggagtgaac
      241 tcatcagggt tactcattgt taaaggagtg cctcagggtt tagtacttag actttattat
      301 tttttccttt aggtattcaa aaccttggtt ggtttgtagg aaatgttaat tatcctttct
      361 gcgttgatat cccactgctg ttttataagc agagctttgc ttgtacaact tcaaaagaaa
      421 tcttcaaact caatattacc aagtttgaat attatctaat taacctccca gtctgtcatg
      481 ccttgttggt tatcatgaaa taatcacagc ccctcaggtg ttgaagctct agatgcagct
      541 aagtgcctct aattccctaa gggggtgatt aactcatgat aacaatgctc ccttgagttg
      601 ttttattgct tttataaaaa gactttattg tggtggaaat gtttattttt atgcaagagg
      661 aagacaaagc tgacagttga ggctggggaa cggctgaaac tgttacttct gagtcctgat
      721 gcaaactact ttgctcatat ctgatactcc ttggacaatc acaatattct ggctagtaat
      781 taagctcctg ctgaatttac agtgtggaga gcgaaaataa atacttctgg ttctgccaga
      841 ggtgagcaat taaaacaaga catggaaaac aaagtttctt ctgctgcagg gaccataacc
      901 tccagagtct ggagtacttc aatgccctga aaat
//
LOCUS       KCLA01002804             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45669upu ultra-conserved element locus uce-2614,
            sequence.
ACCESSION   KCLA01002804
VERSION     KCLA01002804.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45669upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-2614"
BASE COUNT          229 a          120 c          107 g          218 t
ORIGIN      
        1 ggagtataaa ttgtcaggag gaatttaagc agcgtttaaa caacttctct tggaaatagg
       61 aacatctttc aaacagaaat tatatttaaa tctggaaaac gaagtgccct ttccctttag
      121 ctacggaaaa ataaggttat gaggaataaa agtgatgaat tagccgctgc gttaagcgat
      181 aataaatcag tcttggtgtg attcacgatc aattccaatt agtcatgaat atgctaagta
      241 aagcacagta cactggttta gacagttatt tcttcattaa ggatcactca gtgatttctt
      301 tcacaaatgc tctaatctga tttccttttg atttccatta gagacagtga ataatgacat
      361 ttaatttagc cctgcaccat aaacccaaag atatttgttg taattgaatt actgcctgct
      421 cctcactatg gtctcataac tttcaattat aaccctgaca gctgggtgat atgagtttcc
      481 agtacaacac taaaaataaa aggttaataa ggactagcta ccataggagc ttcaatttat
      541 ttacagcaaa tttccacact aaattgaaac tatatctttt aacatcaagg gacaagctgt
      601 ttagatagga attagaaaac aattctgaaa gtattaaaaa acaccttttc ctttttctcc
      661 ttttctctgc tttc
//
LOCUS       KCLA01002805             257 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45683upu ultra-conserved element locus uce-5495,
            sequence.
ACCESSION   KCLA01002805
VERSION     KCLA01002805.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 257)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 257)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..257
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45683upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>257
                     /note="ultra-conserved element locus uce-5495"
BASE COUNT          100 a           28 c           41 g           88 t
ORIGIN      
        1 aattaattta tttatttctt tacacataac tgaaagtgat gttacagtac ataagttatt
       61 tacaactgtg cagtaatgtg ttgcaaaata aattatctag aaggcagcaa aagtacattg
      121 ttaatgtata taaaaactgt acagcattta tgggatacaa tttttcttta tatgagtatt
      181 ggctctgtag tgttttcaag ttatgttctc agaaagagaa acgaaatgcc caagattaaa
      241 ggaaaaaaaa atatata
//
LOCUS       KCLA01002806             237 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45698upu ultra-conserved element locus uce-7162,
            sequence.
ACCESSION   KCLA01002806
VERSION     KCLA01002806.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 237)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 237)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..237
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45698upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>237
                     /note="ultra-conserved element locus uce-7162"
BASE COUNT           74 a           27 c           51 g           85 t
ORIGIN      
        1 ttagtatttg aaggaatttg ataattttgt tgtagttggt aacttggcag gtggtaataa
       61 tgctatgcca gcactgtcaa aatatgaaaa ttaaagtgac gatgggtttt aatgaaatcc
      121 atttgacaaa tataattaag gtgttttaat atgaagccct gtaataaaga ctaccggtgg
      181 actccctgag gtcctgacta attgtgtaga ttgcttttaa gctttgaata gttttat
//
LOCUS       KCLA01002807             495 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45714upu ultra-conserved element locus uce-3830,
            sequence.
ACCESSION   KCLA01002807
VERSION     KCLA01002807.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 495)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..495
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45714upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>495
                     /note="ultra-conserved element locus uce-3830"
BASE COUNT          121 a          114 c           93 g          167 t
ORIGIN      
        1 tgccctttct atttcagcat ggactcacta ttttcaagaa gtaaatctgc agaacttgtt
       61 tcctttatgc tggaactgtc aggattttta taactgttcc taaaactcca gtttacaagt
      121 tttgcgtgtt tcgcaggaat ctcttttcgt gcgtgtctcc ttccaaatct catcttcccc
      181 aggatgagtt tgctcccaaa tgaagtagag gcgttttcct tcaggctgca tgttatcctc
      241 ttatccccac tgttttggaa tagagcgtaa ccagctggag aactgtaaga agcctgataa
      301 tgcagctatt ttctgctgtc ccgtcttaat cttgttacac aaatggttgt gaagagattc
      361 atgaatttta attttgccct ctgcattagt gcctcatgtc actcatacac agctgccttc
      421 tatggggagt tgttcacccc tcctcctaca acaggagaaa aaattagtta caatcttggc
      481 agtagtgcaa gtaac
//
LOCUS       KCLA01002808             703 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45730upu ultra-conserved element locus uce-7171,
            sequence.
ACCESSION   KCLA01002808
VERSION     KCLA01002808.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 703)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..703
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45730upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>703
                     /note="ultra-conserved element locus uce-7171"
BASE COUNT          221 a          143 c          134 g          205 t
ORIGIN      
        1 atttcctcaa aacaaatgga aaaggtattt taagcaagca acacttaacc ttttcttcag
       61 acattgtttt caatcctata atcgtaggct gaagcttgca ggcctggcag ttatttagac
      121 agctgtcaat caaaacgtct cacagctatc ctaccgtgtc agccgtcagc taactcccag
      181 tttcccaggg acgccttagc atagcatctt tgttctgttt tcagataaac agatccgatt
      241 tctcaacaaa cagactgcta cggtcctttt gataacaatg taataattca aaacaaatga
      301 ttctaggctt tgatgatagc acttttatgg gtcatgaaga aatcctccca ctaacatctg
      361 tttgatttta tctacttgaa ctttatcctc cagttgaaga tttataagct gaaatcatcc
      421 cagcctatta aagtcagact aatggtaaag caccagcgca gagaatgaaa gtgcattttg
      481 cagtcatcca ccttttgaaa ccctgctgtg aggaaaagat atccaaactg ggagagatgt
      541 gtgtttaaac atgctggaag cttgcatccc ggaatgactg agagattaag gaatctaact
      601 gtccctacag tgggggcaag ttatttacag aatgattatt tagagagaca acatgaaaaa
      661 tacagatgtt gtttacacgg agaggctgtt ttcttagcag aaa
//
LOCUS       KCLA01002809             614 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45745upu ultra-conserved element locus uce-4234,
            sequence.
ACCESSION   KCLA01002809
VERSION     KCLA01002809.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 614)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..614
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45745upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>614
                     /note="ultra-conserved element locus uce-4234"
BASE COUNT          209 a           96 c          114 g          195 t
ORIGIN      
        1 tttttttctt gtttgctaca gttttattgt agtgaaatat gttcatttta gcagtggaaa
       61 actgccctaa atagacagca taagagctat aagatgtcac attacagagc agagctttaa
      121 aatgatgtgc tctagaagtg aggcttttag acattttggt ttatgtatta aaacttgcca
      181 caaatttgat tgagaatgag cctttgatgg atatttgctg cagttatgct gcattagact
      241 cgatttatcc agcacctctc attgttgcta ttgattgatt tttaaattag atgaaggcaa
      301 tcagtaaata ccacccaatc aagtcctaaa aacatacagg agattagaca atttagggta
      361 atcaatgaaa atattctgtg atttgctagc actcaatttt gaccataaat tacgaccata
      421 acttgcaagt tagtaagcca taaaacaagt ggatgtgaca agaaaaacta taagaaatga
      481 attaaggaga tgaagaggaa ccactagtgc tgtcatttaa tgagacaaaa ttactcttta
      541 tacatatctt gcatttctag ttgggtattg ccaacggtaa tggagtacga gagcaccaac
      601 aattccctca gatt
//
LOCUS       KCLA01002810             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45776upu ultra-conserved element locus uce-4983,
            sequence.
ACCESSION   KCLA01002810
VERSION     KCLA01002810.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45776upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-4983"
BASE COUNT          184 a           97 c          104 g          184 t
ORIGIN      
        1 aacccacata attttatatt ttataattac ctagaacaat tctttctata ctactaattt
       61 ttgtatttat ttatatccca gctcctaaat tcttagctat attttgacag gtactgacaa
      121 agagtgccat ggaattgtga ctcaattgtc accttcagcg ttttcaagct gaaaaactca
      181 ggatgagtgc taggtactaa ttagaactgt tatattagga aagcaaatac aatggtgtct
      241 aacattaaac aaagcacagt tctcatcaca aatggtttct tttgtgtgcg ggttagtcta
      301 aaaaaccatt ttgcatgcta atgaggcaca aacaataatt gctgaagtaa ctagtttcac
      361 acaattacag aagccacata aaaagcccta ttgtttgttg tcttatgatt tttaatgcta
      421 attttacact tgataatttg ggcatttcat ttgtaccacc atgtgcaact ggggttttgt
      481 gtgtatgaag aaggcttcta acagtgggta gagggtagga ggaaacaagc ccaagtgtgc
      541 aaaagtaaaa gcagcagtca ctctcaggg
//
LOCUS       KCLA01002811            1144 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45791upu ultra-conserved element locus uce-3406,
            sequence.
ACCESSION   KCLA01002811
VERSION     KCLA01002811.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1144)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1144)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1144
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45791upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1144
                     /note="ultra-conserved element locus uce-3406"
BASE COUNT          349 a          215 c          218 g          362 t
ORIGIN      
        1 aacagcaaat tattgttcca ctaagcaaac caaattcact gaattggtaa ctaaacagtt
       61 ctcaaataca aaactgaaac ttaagcaaaa gactgtcaga ttttcactgg aaatccatgt
      121 gaatgttagc tggaggtgtg ccacagtggg gtatagatac tgtgctgtgc ctttccagag
      181 taacaacagc actgatgcag gagtctaaca aggtcacagc tgtgctaggt tgaaatactg
      241 tcttttgatt ccagcagttc aggtggtttc acgtgtcact ggcaagaaat aatgtgagag
      301 gaacaaaaat accgatttgt ttaatacatg cacatggatg tgtgtatgta tatgcgtgta
      361 tatgcatata tatagtgcat agagagagaa gtgaacattc ttaaaagcta tatatgtata
      421 tgtgtagcat ttatgcatat aaatatatgg tccatcattc taattccatg cacaactgca
      481 ctataaccat tgtggtttat aaggtcacac ttcatatatg catgactcac tggcttcatt
      541 catgtttcca tatgtatgta gaaacatagc aaagcagaca ttcctagaga cattgcagga
      601 caacctcatt gagatggaca ttctcacctc ctcccgacat gacggtgctt acaatgatgg
      661 gtatgtgaca cttatgtggt cttcctgttt attgtacagt cattatgatc cttgcatgaa
      721 agcatttgat cacatcagtg atgtttaagg acaacaccat tgctggtctc tttcaagaca
      781 gctttgagaa aatgaggttc tggggcttgg agcgctgtcc cctgtacaca ttaatggcag
      841 actcattaat aagctcgtga gctacagcat gcccttcttg ttttgaaagt aatgtaatta
      901 gcaagaagta cctacagcaa ttttgagtcc catgtaaact aaaattaatt taattttcat
      961 aaaaatctga aatcattatt gtgctggcag cttgatactt taaaccggta ttttccacat
     1021 accttataag tctctgccag tggtgcatgt aagccaagtc tttgatttca atttaactac
     1081 ccattttggc atctttgcct aacttttgat tacttaactt ttaagctgta agcagctttt
     1141 aact
//
LOCUS       KCLA01002812            1141 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45805upu ultra-conserved element locus uce-5602,
            sequence.
ACCESSION   KCLA01002812
VERSION     KCLA01002812.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1141)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1141)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1141
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45805upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1141
                     /note="ultra-conserved element locus uce-5602"
BASE COUNT          352 a          223 c          209 g          357 t
ORIGIN      
        1 ataaaaggtt tgctttattt taacaagaca gatcagtctt ctaaatactg gccatagcag
       61 tttattcaat agtaatgaat ttatttcttg agtgcagtta ctagttttct caaaatgcca
      121 cccattttga gacaatctgc agtttcatgc cctcatcaga aacttgaaac tgaaccctta
      181 tcatgtaaac ttcaaaggaa acacaattgt gttagtgact caaatacaga aattccataa
      241 acggccttcc taaagtttaa cagaagtggg gctaaattag agacaattgg gcttctacta
      301 tgtaaacaag gactgacttg tgacagtgca ctttccttca gtcttgacac gtttttgtag
      361 gttgtcagca taaattgttt ccatctacac atgatggaga agactttgtt cctgattgct
      421 ctatatctcc acccctctga attttttttc aataggtgca ctaggccttc caatgagggg
      481 aatgagcaac aatacccctc agttaaatcg cagcttatca caaggcactc agttaccgag
      541 ccacgtaacg ccaacaacag gggtaccaac aatgtcactt cacacgcctc catctccgag
      601 caggtattta ttgatagcca atatttctgc gattgtgttt ttctgcagag ctcttgttaa
      661 atggtctgca cattttgcct caattatttt gcagtctgaa tacttaaaaa agaagaaatg
      721 tagtttctgt ttactactgc ctgtgtcagg gaaacaaaac tgtaagagat taaggaaggc
      781 ggtacttgat tttggtatgt aaaaggtaaa tggctggcaa attctgcttc agaatgtgac
      841 tgttttttga ctgttcggat aaatgtttgt ttaaaattta tgcatggact tcatgtgcca
      901 tataagacta ttaaggtagt aagtctgaag tgctaaataa acaaagagct gtaccacctt
      961 ttcgtatgca taatacttaa gtatttatct aaacctgacc aaggacttga ctagcatgta
     1021 atgggtcacc tggtattcct gaagaaatcc caaactacat taattataga gagtacccaa
     1081 acatgcttta tggatgctaa gcacaaatta agttgcgaca tctcagagtc catcctacat
     1141 t
//
LOCUS       KCLA01002813             767 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45821upu ultra-conserved element locus uce-5620,
            sequence.
ACCESSION   KCLA01002813
VERSION     KCLA01002813.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 767)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..767
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45821upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>767
                     /note="ultra-conserved element locus uce-5620"
BASE COUNT          189 a          212 c          216 g          150 t
ORIGIN      
        1 tgctcctgcc agcctgcaaa gggattccct ggcagcctgg cattgcccga gggaatcccc
       61 tgggctgggc tctccctggt actgccagct ggattagaaa gtgccttcaa gtcaactcct
      121 cgcccccctc ccagcctggt tggtgaaccc tccgacttct ggatgagtca gtacctctca
      181 gctcaggaac tgccacgatt ttattcctct aaacacagca atcgggcaga gtccagagct
      241 cgcctctccc ttttacgctc ggatctgcta ttattagacc ctcatataag gcaagcacca
      301 ttaaaccgat tgctgcccac ccaacccagc cagccccaca gatactgcga gcctctcaga
      361 cttacttgaa aggggaaaag aaagggccag tgagatgatc agggtggagg agaggggggg
      421 taagatttac aagtgaatgg aggtaagaat ggagcagttt gtgggataaa ggggctgcag
      481 agggagcttt acagatgtgc agagggacgg cggctcattg tttaattaag cagaaagtgg
      541 ctcttttgaa aagcaatttt gcacaggagc tctgagctca gcaaacaact cctgcgagtg
      601 agggcaggag gagaaaggaa cagctggccc ggagccgtgt gaaccgcatg ctaagcggtt
      661 taaagggccc ggatcctcct ccccagccct gctccgctgc caccccctcg acactgctgt
      721 caggaccgca aatcccacca agagaaaaga gcgagcgggg ccggggg
//
LOCUS       KCLA01002814            1015 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45836upu ultra-conserved element locus uce-2156,
            sequence.
ACCESSION   KCLA01002814
VERSION     KCLA01002814.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1015)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1015
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45836upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1015
                     /note="ultra-conserved element locus uce-2156"
BASE COUNT          319 a          203 c          188 g          305 t
ORIGIN      
        1 aaacaacaca gcaattcttc tggtctctta attaggcttg tgaaaagtcc gtatggtcct
       61 ttattgttta cagagggtac taccctggga ttttggaaga tgttatttgc atcagtcaaa
      121 acgaagcttg gcttcattgc tgaatctctc tattggcaag ggggttcaat tccaagctct
      181 cagggaagga gagcagtagt gtgtttccca ttgcaagtga tagttcacag tatgaatttc
      241 tacccttcta tttctcaagc atccaccaga ttttcaaccg aaaacacatc agatcgtcct
      301 taccccagta ttgtaaccat gacttcatat ttgaaaaaca ggccttactc tattgaatgc
      361 caccaaacat gtgccttgtc ctttagctca aatatatttt gcatgacctt acatgaattg
      421 cttagataaa agcctttttt cttctacttt tgttatttta aagtgcagat gcatttgagt
      481 cattttcccc ttttgtttca gatccttaag atccacagct tcaaagacaa aatgtcagca
      541 tgcagtcgat ttatgactga actcttgaag agacactgaa gaattacctt gtcaatcacc
      601 ccaaggactc tgaaggcctt cagttcctcg gcagggctcc ttaggttcca agagggcctt
      661 gaacttagtg atcctggagg ctaatggaag atatcaaaga ttatacatca atcagggtgg
      721 tacttgaagg aagactgcct gctgaagcaa atgccaggcc gaaggaaact aaatttatca
      781 taaatcagag agagtgaaga tgaaaggaga agttttctgt ttgtccttag tgggagcata
      841 acttgcaagt aaataaaaac cgagaaacat tggccacaat attttaaaag aaaaaaataa
      901 tgaattttca tactttctat gtttaatgga acctggcaat caattactca attcttaacc
      961 catcacaata atcaatcaaa gccttacagg taatctggat acaaaataat tcaga
//
LOCUS       KCLA01002815            1095 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45852upu ultra-conserved element locus uce-1252,
            sequence.
ACCESSION   KCLA01002815
VERSION     KCLA01002815.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1095)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1095)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1095
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45852upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1095
                     /note="ultra-conserved element locus uce-1252"
BASE COUNT          304 a          187 c          234 g          370 t
ORIGIN      
        1 gccacatata tcaatgtact atagttgttg gatttcttca aaaattgtag ccactgctgt
       61 tctcagactt taactgtttg ctctttaaga tgtgaatgtt aaaattggga tgctaatatc
      121 tggcttcgac ttaccgttga ctcgtttgca ataggtttga atgttccttg catgcctggc
      181 aatgctactc cgtccaccgg tgtctaacaa tgtttttgat ggaacactgg tgcgatgaag
      241 tggttgcagg ttgaatttac ccttgagatg gcacctggga gagcctgtgc ttctgaggga
      301 agcttttctc tttgtgtact atgctgctgt tttgataaac aaagcctgtc tgttgaacag
      361 tgaattttgt ctgtgaaagt ttcatgtagt ttcagtggct ctgaatgatt cagtagttta
      421 cagaacttct tggcaagtta gtatgatttg tatgtgaatt ttccaattgt atttcagacc
      481 ttaagaaaga aaggccttaa tggttgtgag agccctgatg ctgacgatta ctttgagcac
      541 agtccactat cggaggacag attcagcaaa ctaaatgaag atagtgattt tattttcaag
      601 cgaggccctg taagtacttt tattttatct ctacttttta tttgttgatc ctttttatta
      661 acttcattat ttaggctctg aacaagaagg aacacagagg gtgcgacagc ccggaccctg
      721 acacttcata tgtgctcacg ccacatacag aagaaaaata taaaaaaatt aatgaagagt
      781 ttgataatat gatgcggaat cataaaatcg cagtgagtac taaagtatgg tttgtgcttc
      841 cattacatgc atgagaattt tcatggtgtt tgcttacccc tgagaaccac tgcaaagaca
      901 agaggacgta atggtttgag aaggggagtt attttgagga aaaaggagat gctgatactt
      961 gatcttgtta aaatacatat tatcttaagg tttatcttta gctcctcttt tgcactcatt
     1021 tttgatacct tgtgaacatg aggtaacatt tctaaatttt gggagcctag tggcattgcc
     1081 taatcctacc caaaa
//
LOCUS       KCLA01002816             598 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45867upu ultra-conserved element locus uce-2648,
            sequence.
ACCESSION   KCLA01002816
VERSION     KCLA01002816.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 598)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..598
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45867upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>598
                     /note="ultra-conserved element locus uce-2648"
BASE COUNT          187 a          143 c          139 g          129 t
ORIGIN      
        1 acagactggc tgtggcactt agtgcaaggt ctagctgatt gtggtgatgt caggtcatag
       61 gctgggctgg atgagctcag gtcttttcca gcctcactag ttctgcgatt ctgtgcttgc
      121 aaaatgaatt gcaccaacac ctgttataaa tctttaacct aactcatgag atcaattaag
      181 atgctcaagc agctacaaaa aggatgattg aggcaaatag taacatcagg atgaccatat
      241 ggtaagggaa cgctacaact gcgtggacat aaaacgtgag ccactggggc tccaccacta
      301 acggcaagcg ggtaggcagc aaggtgctaa gaaaaatacc aggaggaaaa aaaaccagca
      361 tgggaactcc tgcaggatcc aaaaacagga cttaaagtag cccaaagtgc ttcattccta
      421 ccagtcacac cagaaagctg atgttcccaa ccccgggctt tgctggcaat gagcccagcc
      481 ccagcacacc acacggaaac atcgctaaac gttcaacata attatacttc acgtgggatg
      541 atcagctgta aacagcagcg attttatctt tcccctgacc tgcagggatg gaacaaat
//
LOCUS       KCLA01002817            1121 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45883upu ultra-conserved element locus uce-7688,
            sequence.
ACCESSION   KCLA01002817
VERSION     KCLA01002817.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1121)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1121)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1121
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45883upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1121
                     /note="ultra-conserved element locus uce-7688"
BASE COUNT          356 a          203 c          211 g          351 t
ORIGIN      
        1 gtaaaatatt cataggcagc cttctctgta ttttcttctt cccagatcca cttcttaaaa
       61 gtcacctaca tgaggataat ggtaaaataa atactgtgtc cctaaatcaa ttcttcaact
      121 gcagaacaga tagcaaaccc gttcttcttg cagtgagcaa cagtgtactt tccagcgacc
      181 gccaaacact atgaaaatgg tttcatttac ttccagaatt tgccaaaaac agatgatgac
      241 tgaaactggt aatgactatt ttctattctc tatccctaag taattgacca ttaattataa
      301 tatcaatagg ctgtggataa gtaaagcaga cacatgttag ggctacattt catttgtaac
      361 tgttttgtat atatcataaa tctctaatat tgggctattg tcacacatga tgaattattg
      421 taagcatgtc agcacatagt ggaagtcaag tacattcaaa tactactcag tcagaattga
      481 atttggcatg atagtctcat aaaaggggac tcaattgaga gtttccactt gcctgctcta
      541 aacttgtcac ttgtaggtgc taaagagctt gttgtgttgg tttaattagt caacaaatcg
      601 gtccttactt gattgcgtgg tcgtatcaca tatgttaaca cttcactgtt tgatggagat
      661 attaacaagt gacaagagtc tcttggtcta tggactttaa agaagagaag ctctcctata
      721 ttatttcatt tggtcctgcc aatatttatt agatcatgca ggctgcaggc tgccagcgag
      781 agaaagacaa cacaaacatt tttcagggtt atgctcatct gtatcccaaa gaagggtcac
      841 taaacaatcg atgggagaag aatataagta agatgagtgt tttctaccac agcttagaaa
      901 ttcattattt gatacagttt gctgcagacc tccttggagc ttttttcact taaagataat
      961 ttatgacaag aacagagagg ttcttgaaaa tgctatagca actggagctg aatgatgcca
     1021 ctctggcact agatgcatag tcaccagagg ccagtaaaaa ggaagtttgc atttgtatga
     1081 agaactgtat tagttaagca ttcatcagcg ttgtataaaa t
//
LOCUS       KCLA01002818             696 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45899upu ultra-conserved element locus uce-2206,
            sequence.
ACCESSION   KCLA01002818
VERSION     KCLA01002818.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 696)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..696
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45899upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>696
                     /note="ultra-conserved element locus uce-2206"
BASE COUNT          229 a          151 c          122 g          194 t
ORIGIN      
        1 aaaggggatc aaagaatcgg agcgctgaaa taaacatccg aatatcctag taggaagcac
       61 agaaaggttt cagtcatgat cattagatcc acttactaca aatgaaatca tcccctcctc
      121 atgcacaaga gctggtcagc acttccatgt atccttgctt atttcagctt tcagccattc
      181 cctagcgtgg atgtttcatt gatggctgag ggtaacactt caaaaatgaa ctagctaaac
      241 aaacttccca gcagcacttg acagagctac acctattctt ccccatttcc aaagcagtac
      301 agaattaatt accagttcta tggatctatt gtaagtataa tagactaaag agctatcaca
      361 gacacattta ttgtaaaagc acaatcccaa gagtgtctag tagagggcca aaacgattaa
      421 cacaaatgct ttgtcagatc aaagataaaa cctgcaccgc ccaattgagg aatgaattag
      481 aacagtgggt tatctttcaa attaaccagg gcagttagtg aggaaaattt catgaaagtg
      541 taattcttag cctttgtgaa tccacacagc aggcattctg ccagctgaca agatgatgaa
      601 attttcatgc ttaaaaaagc cctcttcatt tcccaattta gattagctag cgtttctctc
      661 tcttttcatc tatttgctct tctgaagcag aattaa
//
LOCUS       KCLA01002819             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45929upu ultra-conserved element locus uce-4024,
            sequence.
ACCESSION   KCLA01002819
VERSION     KCLA01002819.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45929upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-4024"
BASE COUNT          160 a          187 c          178 g          243 t
ORIGIN      
        1 ctttgctttt tgatcctctc tgagctgatg atgaattcag ccttgttgga aacacaagct
       61 tgaagaaggt tctccgtgcg tgcgttcttg ttgttcttta catgctgtgt tttgtggtcc
      121 tcgttactga cggctgcttt tgtttgtttc ctttttgttt ttcctttgtc tgtttgactt
      181 tcccccgtac atggtgtgcg ttgctaccag tttctattgc tccaccccct ccccctatgc
      241 ctcagttgac tccacagata cctctcacag gcttcgtggc cagggtgcag gaaaacagta
      301 agtttggaca agccgagctg gtaaagggta gagcctcctt tcttctagca tgcatggctg
      361 gcaagtcaga ctctctttta tttccctctc cagaagctaa tcccatcttg cattctagtg
      421 tcaatatgct atcggagctg aagggcacac tcttcaatat ttgataacac gcatgattat
      481 tactgacctc tggagttctg aactgcaaat ctgttgttgt acagcgtgaa atccgtgacg
      541 tacgcgtagt gcgagcacgg aaacccatca gcgttacaaa cgggagcttg atgctgaatc
      601 tcgccgcagg cttttccagg agggagaatt gattagctgt tattagaaag gcgcacaaca
      661 cgctctgtgt aaccacagat tccaatcccg tagtagtttc ctgaagctgg acagtcagtt
      721 tgagggtgca gtcctgtgat ctaaggacct cgcaaggtgt ttcttctc
//
LOCUS       KCLA01002820             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45945upu ultra-conserved element locus uce-2000,
            sequence.
ACCESSION   KCLA01002820
VERSION     KCLA01002820.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-2000"
BASE COUNT          161 a          103 c          127 g          156 t
ORIGIN      
        1 gggaggtggc ggcacagagg aagagcaaaa taattaaact ctataaaaca aaaccggttt
       61 tcttctggaa agtgcagaat tctttagttc tttggttcca gagagagcgt gaagatgctt
      121 gtgccaggcg gcactggagt ttgccaattg atccttctta ttctgtgtgt acatgcgaag
      181 tttggatcat gttacatgaa tagtgccagc tgggggttct ttgccagcac catgccaagt
      241 gaaataatat atttactctc tctatatttt acaccagtgt gtgcctgcag cagcctccac
      301 agccactata ggtttgtttt atttttgttt ggggtgaggg gcagggatga gggaggagag
      361 caggtttcaa atccttattt gcagaacagt ttgtttagct agggaaaaac aaaaacaagt
      421 ccaaagagcc tgtgggcttt tcctgtttct aaactctcag tactattaaa ccaaaaaaac
      481 agaaacacaa attatccaat cccagtgccc agaagggaca gtctatcaaa taagcagtat
      541 ttactat
//
LOCUS       KCLA01002821            1081 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45961upu ultra-conserved element locus uce-16,
            sequence.
ACCESSION   KCLA01002821
VERSION     KCLA01002821.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1081)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1081)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1081
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45961upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1081
                     /note="ultra-conserved element locus uce-16"
BASE COUNT          361 a          214 c          215 g          291 t
ORIGIN      
        1 ttgcaagaat tgcgtagcag gtgaagtgtt gtgcacagtg aattaataat atggcaaaat
       61 aaataaatga agtttccaat tgtgccttta ctccacagtc aactttttaa cacctcacaa
      121 aaggcaaaat gctcacttca gtcatgtcca ctgctgatca ttaattgctt cagaaaaaga
      181 caatatttta tccatcctct ttggagtcga gtatgaatgg taaagcaaaa gagagcgaaa
      241 ctgagtgaaa catgaaaagc ttgatttgtt aggacccctg ctgtctgaaa agagatcaaa
      301 gctcaggagg aggctgtaaa acagccgaat gcaatgcaca gaaacatggc ctgtggcagc
      361 tgctctgggc acactctcac aacacaggtg tacctccaag tctgttctgc cagctgaatc
      421 atgggagcag gttacctctt ctccttcttc attatttcaa ctgcagtcac tgaggagatg
      481 tgggcaccat ccatcacaat gcacaaattc acagtgcgca gattcagcac aggcctaatt
      541 aaagcttttc ctttcatttg tggagataat tagactttca tctcaccagg aagcttcaga
      601 aagatctatt tctttcttca ataaaagcta catcaaacaa aagcagattt taatcgcctt
      661 ttctttgggg catgagtcaa taatgaaaga tgtcatgggt aacaaaattt gtgtgcaggg
      721 agaaaaaagg agggaaaaga gcccaagcta tgttctttaa ttaacatcat gtttgcaaac
      781 accattaatt tctctcatta aaataatttt tatctacaac tgattgttga taaaacaatc
      841 gatttgaaca tctcgtctgt ttcactgcta cgcaggaacc catctgctgt gctgtaaagt
      901 aggaatcacg cagactgtta agcaacatgt gagaacaata aaaaatgcat atgtgtgtgt
      961 caaggatttg caaggctcac tgcagggcaa gggccacctt ttctcagaac atgtataaaa
     1021 aatgacttgg tagaaggcca aaggacaaaa tgtcacaaag atcagaagtg cataaataac
     1081 a
//
LOCUS       KCLA01002822             871 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45975upu ultra-conserved element locus uce-556,
            sequence.
ACCESSION   KCLA01002822
VERSION     KCLA01002822.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 871)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..871
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45975upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>871
                     /note="ultra-conserved element locus uce-556"
BASE COUNT          286 a          167 c          149 g          269 t
ORIGIN      
        1 acttttttaa catctgaaaa caatcaaggc acaaagctgc gaaatgtttg gacattaatt
       61 gttaagagac agctttttat tccagactag gggtttgagt cctctactgc taagcattct
      121 ggtatagaaa tgatttatgg ccttgtagca ataacgatgc ggctgagcca ttaacatatt
      181 ggcagaccca aggatggatt atcgacattg attatttcat ggaccactga tacccatttg
      241 ttaagagaag ctcgaagatg gcctctccct gactgaaatc ttttacgagc agacagcatt
      301 ttaagtatta ggaacctggg atttgggcca tttttttcct tccctccccc agtctccctc
      361 tgtctcctct tagactctaa caaaaagtgt caaaaattaa agttcattct tcactccagt
      421 cttaatttct caactcatca taaccatgtc ttctttaaaa attaatgatt gccagcattt
      481 agccactggt tgttgctatg aagatctatg caaaaagcaa ggatccctat agagtgtgtg
      541 atatatggaa ttctctttat tactacaata aaacttactg acatttcaat acttctgcaa
      601 atagcattat agtatcaatc ttctgaatta ggttgaaaat taagttgtaa attaaaagaa
      661 agtgtacttt ggaatacaac atgatatgtc acctagaaaa agacctttgt gcataacaga
      721 gctgagcaga aaaactgaaa gataagccca ggtgcctcta aagtgcctat ttcatcataa
      781 aggatctagg ttatatttta caagaagaat acagtctgaa agccctgata tttcacctca
      841 ggagaaaaga tcctgaatct ctttaaaaaa a
//
LOCUS       KCLA01002823             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 45990upu ultra-conserved element locus uce-4840,
            sequence.
ACCESSION   KCLA01002823
VERSION     KCLA01002823.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="45990upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-4840"
BASE COUNT          215 a          212 c          191 g          213 t
ORIGIN      
        1 gtactggcag gagggagcgg ctggttggag ccgcagcgct ggaaccgagg cagtgctgag
       61 ctcagaccca gggggctctt tagtgctaat ccattttttt taaatcaaat tttttaatat
      121 cttttttttc ctccactttg tactgatagt tctgttttga cttggtgctt agattccaca
      181 tctggtcact gtgaaatccc aaggaagctc cttgtctggg tctcagtcac tgcatgaaca
      241 gcctgcaaag ggactggctg ggtttcagga ggctctgacg gtgacctctc accgcactga
      301 gatgccaagg cagaactcgg accccacctc agaaaaccct cctctgcccc ctcgcattga
      361 aaagtttgac cgaagttctt ggttacggca ggaggaagac attccaccaa aggtaacact
      421 atcgctcctc actttcagca catcaaagag gcaaccccag tgctaagtcc ctgaactgaa
      481 gggactgagc agaagcccac gcccatggct ccacggcaga taccgacctg cctggggtct
      541 gcatttccca agcaggtttt atgctgggag ctgctttcag ggcacaccca gtgctgcaaa
      601 acaccattgc cctccagcga agaacattct cgagcctaga cagaggccaa gataaattaa
      661 tatctccttt ccctaggaaa aaaaacagct ttctgtttaa atagaattat aggaacataa
      721 aatttatcat cctcaataag atgggtcctt tttagtctgg gagcgtgcct ccagttgaaa
      781 tcaatatttg atggaagact tgtaagggct ccagcagctt tatacattca t
//
LOCUS       KCLA01002824             790 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46006upu ultra-conserved element locus uce-6517,
            sequence.
ACCESSION   KCLA01002824
VERSION     KCLA01002824.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 790)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..790
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46006upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>790
                     /note="ultra-conserved element locus uce-6517"
BASE COUNT          260 a          143 c          140 g          247 t
ORIGIN      
        1 gcatgtaagt acattttcca taggagttct tacatgccaa agctgacatt gaaacttcta
       61 cattcagtca ctgagaatta aagcttacat catatattca atagcagtat aaaaagtttc
      121 tgtgtgtctc attgtccaaa atcagtgttt ctggcattta aacaagttga tatttaaagc
      181 catttccaaa cagtattaac aatacattat taaaaagcat cccaaaatga cattgtcctt
      241 catgcagtgt cctttatgca ggccagtagc aaaacaactg ccagttaagc ttttaacgta
      301 tatgctcaga ctgtgctagt ttctgttaga ttcagctatt gatgcagcag gtcacaatgc
      361 aatttagaat caattaaaag gtaatgaatg tgctgaactg aaacctctgc ctgggaggct
      421 tttctgtgtg caagggaaag tagatagata tgtgtccttc agtaatttct gttggtgaaa
      481 tagtaaagca aaatgcttct gaaatgggcc tcagatgtct gaaggacagt ctgtttttgc
      541 aaacgtgagc actgctgaag ttctgcgata gaccagctta aactcctaca cacaaaatca
      601 aagcaacttt ttaaaccaag aactctgagt attctgtctc cacaataagg gtttaagaaa
      661 aaattatgct acactttgca tactacagtt tgtgtgatta atatccttta aacaatgtat
      721 aatttctgta cttagttgtg gcatatgtca aacactgatt aaaacaatta ctaagctaca
      781 gcatggctta
//
LOCUS       KCLA01002825             953 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46035upu ultra-conserved element locus uce-2102,
            sequence.
ACCESSION   KCLA01002825
VERSION     KCLA01002825.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 953)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 953)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..953
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46035upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>953
                     /note="ultra-conserved element locus uce-2102"
BASE COUNT          329 a          175 c          151 g          298 t
ORIGIN      
        1 aggcagcata ccagtatatt cacggaagca tcaactcagg catagacagt atgcaagtac
       61 atgttcaagt atgcatacat atatttgcct cacacagaga acagacacag gtatggcaaa
      121 cccgacttac ctgtgtctat tgtccattat tttgaaagtc actagttttt taacagcact
      181 aatacttatg caaggcatag tagtagaaac tcgtcatctc taagatttca cacattccct
      241 aattaattca aggggactta cagttttaga taacattctt ccttttatca cttgccatct
      301 agcagttggt ataatgtcaa cacttacatc tttttttcca actgaaagca tttaaaaaac
      361 atttttatcc taaaatgttc tcctcaattt ttcaaaaatt atcttaaaga gatttcttcc
      421 catttcagtc ccacaacaac gagaatgtca gcacagcttt tttgacagac aaattattga
      481 atcaaaggaa taatatgcca ttaagcccac aggttaggaa gtgtcaggaa tggtttaaag
      541 agatatccca tttatcttca aaacatgcac agaatgtcac taatgtgtgt ttatcatgta
      601 taatcagaca aagaaaatat cgaaataaag tactcctgca tacaatagaa gtctcctttc
      661 atctctcaag atatcagtgc tattcaaata gaataataat gatgaaacct ccttttttga
      721 aaatggaaat caagtgaaat gtagatagaa atgatttttt gtagttgatg tacatttcta
      781 aagtgcatta acaggaaatc cagaactttt taggtcaatt atattgtcag tattgtcaat
      841 gccattgaaa tgaataccta agcactgcat attcttgctg gaacagggtt agagaagaaa
      901 tcctgtattc agttacttga ggagtaactg caggcacaca cttaaaggtt tgc
//
LOCUS       KCLA01002826            1027 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46049upu ultra-conserved element locus uce-3622,
            sequence.
ACCESSION   KCLA01002826
VERSION     KCLA01002826.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1027)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1027
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1027
                     /note="ultra-conserved element locus uce-3622"
BASE COUNT          311 a          175 c          219 g          322 t
ORIGIN      
        1 atttttaaac tgagagtaaa ataatgtagg acaatattgc atgaaattac atctctggtg
       61 ctgcctctgg tgaaagcctc tgagttaact tcatgtctgt gcatctgctt aggatgatgc
      121 atttagaatt tagggatgtt gtgccttttt cagtcttaga agcaaatgac ttggggtcat
      181 tgcaaacttg ttgattagga ctcttcattt ggaggatcaa ttggtttgtc cctataaatg
      241 ccctttgtca aacataatag atggatgaag taactcctta ccttccgtag aaaaatatat
      301 agtccttaaa aaacaggttt tttttgagag atgtgagatg gttttacatg tttaagaaac
      361 caaacaaatt ccaaactgaa taaaagagac ggaggaggtt gcctttctgc aagccagcag
      421 ctttcccaag tgtctcatcc tctcccctct gtcatcctga ggcaatgtgc ctgcatttgt
      481 gcgtagattt atagtttatt tttatctatg gcttcatctg taggtagcta ttatagcagc
      541 cttgcctgga tattgtttgg gcctgataga tctgtctgta gttcatcaaa ggggagctga
      601 gtggctaaaa gccattgggt ccagctgagg atgaaatacg agccatcagc cttggtaatg
      661 gctgtaaaat ttcataatta cacggccttt attacattgc ataatgatcc tgaagcagta
      721 tggaacaatt aattaagatt ttcaagcgtg gctctttcag aaattaaaag gtgctagtgg
      781 ctgagaaatg gggaagtgtc ttgtcctaaa agcattagag atgcttaaga agtacttcct
      841 gggtactaaa aaaaaaaaga gcaagagaag ggaaaagaag tggagaaaaa agacaagaag
      901 gcaactagtt aaccagctaa tgtcagtttt ttactgctaa ttcttaatgt caaagctgct
      961 tctaaaactc ctgcagtagt cactgccata aagctattcc ttttctattc tgtaaaaatt
     1021 ttcatgc
//
LOCUS       KCLA01002827            1060 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46065upu ultra-conserved element locus uce-3150,
            sequence.
ACCESSION   KCLA01002827
VERSION     KCLA01002827.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46065upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1060
                     /note="ultra-conserved element locus uce-3150"
BASE COUNT          265 a          244 c          262 g          289 t
ORIGIN      
        1 ggagttacat gctcgaacca gacgagattt ggaaccagac ccggagtttg atccaatctg
       61 tgctttattc tattgcatct cgtcagacac gaagctgcca catacggata gaaaagaaat
      121 cactggtgct gtagtgattg aaagagacgg gccgctctca agccaaggtt cctatttctc
      181 ttttcttaac atactttaca gaaatgctta ttcgagcgta atcaaacagt agcaaaccga
      241 gtgtctgtat ctctgtttag ctcatttaat tttgtcgtgt tgactgttgg atgaatggcc
      301 gtattaagca tcgagttttc ctgcttatat cttccaaaga actctggcat gggctgcaga
      361 ccgcaggtga cgttcacacg cgcaaactac tacgtttgcc tactcgtggg caagctcctg
      421 cagagttctg aaagtataaa gaggaaaacc tgcctttagt ctcctactcg agttgctgga
      481 tagctgcaag tagaaaatgt taaaagcgag acagtatgtt ttatatttta cttaagggtt
      541 atttttgtgg ttttatctga tcctttcagg atctaaacag gggcccttat tctattgtac
      601 ctttttggct ttgtttagac cagtgatact caacctgtgg ctctagagcc ggatgtggct
      661 cttcatggcc ctacaggcgg ctctcgcaat gtaggcgtct gatcggcgct ccactctatc
      721 aggcagcgcg gggagcactg agcaaatgga ccagcagtgt gggagtcgct gaagttcccc
      781 ctcccatagg gggaaagaaa aggagctgct gggatccccc cacaggtaag agtagagatc
      841 acctcccacc cagcagctgt ggggcagaat ggggaaaaac tcgccctttt gccctttcca
      901 cccctccacc ccactccttc ctagcagcca gaggggttga agacggtgct gctgtgaggg
      961 aggatgctga tgtgtcatgt cgtgatgtat caatatgtga tggtgttgac agcagcatca
     1021 cacattgaag tgtcatgatg gacaaaaaat cacacttgat
//
LOCUS       KCLA01002828             319 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46080upu ultra-conserved element locus uce-1758,
            sequence.
ACCESSION   KCLA01002828
VERSION     KCLA01002828.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 319)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..319
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46080upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>319
                     /note="ultra-conserved element locus uce-1758"
BASE COUNT          102 a           47 c           53 g          117 t
ORIGIN      
        1 taactctaca ttctcttcag cctttcttag ctttatgtac agttggataa gttttgactc
       61 tttctgtcta acgctgtttc ctctaatggt tgaagaaatg gaactttata ctgtgtaatg
      121 tgtgggggtc acattaatca cagaaaattc ttttaatgta tcagaagtaa ctgtcagact
      181 ggacatactg aatctattta aactaaagca tgccattttt tatctacagt gatctttaat
      241 tcacataaaa gggtcaagaa aatgtgatta agtgacagtt ttaaaatgta ctataatatt
      301 aaatagcttg attaagtga
//
LOCUS       KCLA01002829            1139 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46095upu ultra-conserved element locus uce-5536,
            sequence.
ACCESSION   KCLA01002829
VERSION     KCLA01002829.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1139
                     /note="ultra-conserved element locus uce-5536"
BASE COUNT          334 a          216 c          231 g          358 t
ORIGIN      
        1 ttattatttc cacgtcagga aagtaataca gtaatattgt gccagccact gaaagaagaa
       61 atttctagct tgtctgtcct tcagcttgaa ggacttcttt gcatgcttct taaagcatat
      121 atttggacat caggagccta ttgtaaagaa caatgaaata tctaaatctt gcgctgtatt
      181 ctactctgaa gcaagacaaa acaccagaac gaataaacac attccatgtt actctccttc
      241 caggagagtg gcctaaggat cactagttcc agaaaatttg ctttcgtggt attgtgtgat
      301 ctttctccca caaggcagag caaaggtgtt taatgttagt atagtcatgc tcattgccca
      361 taatgttaac tttgttgttt gtttcataga tctatttgcg attcttggac tatgagatgc
      421 agaattccaa tgaatgcaaa aggaattttg tagctgtcta tgatggaagc agctccgtgg
      481 aggatttgaa agccaagttt tgcagcacag ttgctaatga tgtaatgctg aggacaggcc
      541 ttggtgtaat ccgcatgtgg gcagatgaag gcagtcgaaa cagcagattc cagatgctct
      601 tcacatcttt ccaagaacgt aagaccctaa tcaatgtgcc cccctttcag tttattaaat
      661 tattcaagtc ccaaaagcag ttaatgtttt cttcacgcag agtagccact gaaggatatt
      721 cccaaccgag ctttgtagat attcagaaca ggttctgttc caagcagtta cagcgtgcaa
      781 taatttgtaa tgcagtagat atatcacagg actcggaggc aggaagtaag gtagcagtag
      841 tcatgacctg tccagtcata tgactgtgac atttatctca catccaagct accaggtttc
      901 tatgtttcag ttttccctta cacaacatgg aaaataatac agcatgaagg ttttttccta
      961 gccggatcct ttcctctaaa tttgcttttt tagatctctt tatgatgggc atttgaaaaa
     1021 tgccttatga ttattttatc acagatggtg ggtgtgtttg tgcataagcc agaaggcatc
     1081 gatcagtaaa catacatgtc agatattgtt aagcaatgaa tttagttaat tttttgcag
//
LOCUS       KCLA01002830             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46111upu ultra-conserved element locus uce-838,
            sequence.
ACCESSION   KCLA01002830
VERSION     KCLA01002830.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-838"
BASE COUNT          226 a          188 c          155 g          257 t
ORIGIN      
        1 tttagggtca ggggaagaga agattttata acatttgtta tctccagaaa ttgtccatta
       61 tgacaagact agcttggcct gcagtaagtg tcccactctt tcaccacagt gtaactatgt
      121 aggcacctgt atctcaggca ccaagcatac ctgttactaa agtaacacag gaatccatgc
      181 atatatactg aaatttgaag aggatttcct aatgccttta cttggtgcct tcttcctaaa
      241 tgtccactat tccaggcaga aactttcaaa ggtgtagtca gcagccccag tcaaggcttt
      301 tcattgtttc tttagcagct cagttatgtt ggcttcatag actttcccac tgtaccatct
      361 ctgttccaca gtctagctga caggctcttg acagcaggac agctagatca aataaatctg
      421 agacctgtct aggtgcttca tttatcaaga ggcctaattt acccaggccc tttagactaa
      481 ttgcagattt gcaaaaaatg ctgataatgt agaacagtgc attgtgaatg tcccttgcca
      541 tatttctgct aatgtgtttc atctggagta cataaagaga cagggatgct gattttagac
      601 acagcacttt ggggctaatc cagttaaatg attatcccta aaaatctgca gtgaagtcat
      661 tttccctata gaacttcgcc agttgccttg tttgctttat tgtgagaaat acgtgatccc
      721 atgcttcaga agttcaccct gtattcttgt tctaacacac tgtaagtctc tcatccaaca
      781 ctcccagctg cccactcctt gtttataaca gtcgtgttga cagcaa
//
LOCUS       KCLA01002831             791 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46126upu ultra-conserved element locus uce-1677,
            sequence.
ACCESSION   KCLA01002831
VERSION     KCLA01002831.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 791)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..791
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46126upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>791
                     /note="ultra-conserved element locus uce-1677"
BASE COUNT          226 a          159 c          180 g          226 t
ORIGIN      
        1 aaagaggatc tggaaaagtt agcccctcgg tgctcgtcag tgcgggatgt gagtcaggat
       61 aactctgccg cttcgaaggt tccttgcaag gagcaagtca agaggagcag aaccaccgta
      121 aacttcaacc tcggtgatga ttcggtctgg ctttttgaaa tagctaatat ttcctggcca
      181 tccctccccc gttactgaaa cgctggtaat cttgttcacg gcaatttccc cgagccacag
      241 cagacgtgca aagcttcccc tcgtcagagg tgcagagcga gtcattgtca cacagctaga
      301 tatgaaacaa ggatgtgaaa agagaatcct gcctaatctc tgtaataagg gcttgcgagg
      361 gtgctaacat ggtcacctga attatgcatg tctattgtgc tcaaatatca taaaccggcg
      421 cctgaatacc ctccaaatca ttttcagttc atgaacattt atatacagag ctcttgagcg
      481 ctgcaaagac aattagtcat atttgtatgc cggaattaat tgagagtgag atgcgggagg
      541 cagaaagaga gaacaaagaa tgctttttgt cagttcttcc aactgacagg gataattaga
      601 tatatgaaat tgaaattcct cagcaggggg tttctgttga caatgaattt tcttttgatt
      661 ccattctgtt attcttttat gctgtcatct gtggcaattt gttattcagc ttgaagctta
      721 aaaaagcaaa gcattccgct tttatgagta gatgatgtca gtttgtacac tgctgggaaa
      781 tagatattaa a
//
LOCUS       KCLA01002832             971 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46141upu ultra-conserved element locus uce-735,
            sequence.
ACCESSION   KCLA01002832
VERSION     KCLA01002832.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46141upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>971
                     /note="ultra-conserved element locus uce-735"
BASE COUNT          333 a          176 c          171 g          291 t
ORIGIN      
        1 atatatgcaa aacaagtttt gaatagcagt atgaagtacc aaataaattc ctttaagtgg
       61 tactggttgc aattattttt tttcaattta cctaccacca aattaagcaa tgctggttgt
      121 aaagtcttga aggacaacta aaccaaagca gacatctgtt tcattaggca gcaatttttt
      181 actgtggtaa catttgcaat tcctataaac aaaccaaatt tttaggaaaa cgtgtaacac
      241 attcagtgga aaaacatgca cttgctcttt ttcccccaaa cattctcggg aagtaatctt
      301 aagaagtaga agaacttgct tcaaacataa tccagaacaa gggattagat gtccttaaag
      361 acagttggtt gttgcttgga atgcataata atgtttaatg aagtaaagtt taaaaacctg
      421 ttgccatgag ccaaaaatac tggatgtgaa agccaatgat ttaggggaga caggggaaga
      481 agtgatttgt tcccctgatc tgcgtcttcg acgcccagta cccacaccac tggtgtaatg
      541 cagccaggta ccaatacact ctgggctaga cacactcagg gggctctctt cctggaagtg
      601 agaaaggggg caaaaaacag caaagcatgc aaagttagat tcaacagagc caaacgaaca
      661 gaaaagaaaa aaaacctgat ctgcttgcac ctttttatac tgattttaga actattaaac
      721 agtgaacaga aatatcacca tattaagaac ttacttttta tccaactgtc tctttaatac
      781 atactttaaa taaaattttg tgttgtctaa ttattagatg tgagagaaaa gtaatagctg
      841 attgccaatt ttaagaattt cctacgttgg aaacagatca tcagttatcc ctgacatact
      901 gtttaatagt ttccaccctt taagtacatt aaactgacct attttttact tactagtttt
      961 tgtgtctagt c
//
LOCUS       KCLA01002833             641 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46156upu ultra-conserved element locus uce-6076,
            sequence.
ACCESSION   KCLA01002833
VERSION     KCLA01002833.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 641)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..641
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46156upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>641
                     /note="ultra-conserved element locus uce-6076"
BASE COUNT          201 a          106 c          107 g          227 t
ORIGIN      
        1 acatcttata gacttacttc attcaccatt tttctcccga gatggaaaag ctgtacaaaa
       61 gcttttattg tacagaaggg gccacagaaa actacaaata tttcaccctt tttcttttct
      121 gaaaatctct gcagaattgg ttctattcat ttggattcat agatagtact tctctaaagt
      181 agcagagatt tattcaactc ttctgtattt aaatatggag ctcaaaaccc taatcgcaat
      241 ttaatttgac taaatactta catactttat ggtcaatcat ccagatcttt tcaaggtccc
      301 ttggctttgg aattactaat cctaaatggt actatatatg agccttgtct aacatgacat
      361 atattgaaac agactgtgga gcaattgctt agagatgaga accttgctac agttgtagtg
      421 aaccaaagct aagaggcaaa ttattcaatt atagtaaatt tacagtagct taatatttga
      481 tagaagtggt tcttctgtca tcagagcatc atattgaaaa ttattgagca gcaaaatagt
      541 tccggaagtg ctgaggatgt tttagccact tattaagaaa attcatgtat cttgattttt
      601 ggctctttgt acagtaatgg ttgctgagat atttttgttt t
//
LOCUS       KCLA01002834            1146 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46170upu ultra-conserved element locus uce-146,
            sequence.
ACCESSION   KCLA01002834
VERSION     KCLA01002834.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1146)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1146)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1146
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46170upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1146
                     /note="ultra-conserved element locus uce-146"
BASE COUNT          348 a          215 c          268 g          315 t
ORIGIN      
        1 taattccatt ttctagcaat ccttgactat acccccattc tattttctgg tgggctatgc
       61 aacgactgtg tggcctttca gtaggggaaa tgaatgtggt atattgattg ttaatttata
      121 gagagaaaaa cgttataagg gatggtgccc tatacctgga gtgtcagcgc aaaggctgga
      181 aatgtcccca gaagcagaga ttcaagcaaa gggaattctt tttaaggaag cttggtttaa
      241 tcccattact ctaacagggc ataatcaatt gacgtggaaa atctgaaggt ctagttcggc
      301 cactgataag agcttggttg tttttaggac agcggctaca atgaaagaga aggaagttaa
      361 taagcttttg gtccgctaat ccacacttcc tggagcgagg gtgagttttg aaggagggca
      421 atttggaagc tgtcttagca taaatctaaa ggcagtctgt ggttgtctag ggggaacgag
      481 cccctcagca ttcagcgaga cacgcttcaa ggagattcta ctcttaatcc aatttactca
      541 gccgaataag tcccactgct tcggcttgcc aacaaattaa aatccagctt cataaaaaca
      601 ccttgaattt ggaaggtatt ggctggcctg ctagacttga aacttcattt attctggcta
      661 acttctcaat tatcttccca gcagtggaga tgtgtaaaag tgcaaaaatc aataggattc
      721 tattcccttt ctattggaaa gggaaaaatt aatgagatag gacactctct taatcagaaa
      781 taaatgtttt aattcagata atgacatagt tttccctcgc tgaaggatga caaatgctgg
      841 gctgcacccc cagcagaagc agtttcaatt ttattgtaaa tataaaaggt attgatcggt
      901 gagatgcaca aaccctattg cttacaaaag ccattcaggg ggactgggaa aactattaag
      961 cactgggtca gaaatcaata aacaacactg aaatgtagca gaggtcgccc taaggcttcg
     1021 tggcatctta gaaagccaag tggcagaaat agtgacagaa ctgtctcttg tggagcaatg
     1081 ttagggatga aggggtcacg cgtttaatct cttcggggct ctgacaggtc tgtggaacag
     1141 aactga
//
LOCUS       KCLA01002835             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46185upu ultra-conserved element locus uce-2007,
            sequence.
ACCESSION   KCLA01002835
VERSION     KCLA01002835.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46185upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-2007"
BASE COUNT          247 a          166 c          147 g          263 t
ORIGIN      
        1 agtcgcaaag aaccaagctg caaaatgaag cgttgagatt tgaaaagttt ttaattaaag
       61 aaggagttta tttatttctt aatatctgga ttttaaaaat cctcagggag atgatacccg
      121 gggattataa acctctcttc aaacttctag cttcggtcgg tctcaatttg ttcgagaaag
      181 agttaagttg aacgagcgga aaaaaggaat taactaaagt aaggcccttg tgatacaatg
      241 acacttgctc tgtgctctta cagagaaaaa cacgatgata aaacaccaca aagaggagcg
      301 ttatgaattt tattaatgac tagaagacag tgtgcaaaac atcaaaggtc tgtggaaaag
      361 attaatgacc ccgtgtgaga ctgtttaatt acctccagct aattagattc ttgaccaaat
      421 ttttaatatc tgcattcctt ctaaagccta attgagattc cacattattt atcaatcttt
      481 caaaaagccc ttagtgtgct gctttttttt tcccccttcc ctttgcactt tgactccatt
      541 tatggtcaat tattaaataa atagcaaagt aaccgcgctc tccaaactgt atccgcggaa
      601 cactcgatgc ctgtttattt tgactaggag actatcgttg gcatcttttc tgcataatga
      661 agcactctaa ctaataaact gactgacttc cctgtaaaca accttgataa tatttttgtt
      721 atctgggctg cgctcacgaa ctcctcgtgc ggtttctgta aatcagcctt tgctattgtc
      781 ggttaatcct tatttcagtt taccttggtc cagtcccagg gcc
//
LOCUS       KCLA01002836            1029 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46201upu ultra-conserved element locus uce-5387,
            sequence.
ACCESSION   KCLA01002836
VERSION     KCLA01002836.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1029)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1029
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46201upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1029
                     /note="ultra-conserved element locus uce-5387"
BASE COUNT          292 a          221 c          202 g          314 t
ORIGIN      
        1 tgtcacggat tgagggtctg aattgcaacc cttgatcatt tctgcccaat tagtaaactg
       61 gtgcactggc actgatgctt cttactgttt catcccctct taaaattagt aaataaaatc
      121 ctgggtttgt gtttttctaa agaagttttt ttccttaata ttcagaataa aaaagttcac
      181 ttactcttta tttttgtgct aaaagaaagg agcaagggtg gagctctgct ggaacagagc
      241 tgctctgagg gttttgcaag cagtaagaaa atataagtat caaaataatt cagaaacagt
      301 acaaggcacc gtggcacatt atcaatttac aacatttaaa ttgataaatg cttggtggtg
      361 aaggcctaca agggcacttt gaaaagcaaa tagcgacctg gtgaagaaat tgatttttcc
      421 cccccgaaaa tgactgcatg atgcatcatt tgactgcatg ctgtccaagt gcttgacaga
      481 gataatctca gcaatcccac gggtgacctt atcgttctca ccagggcaac tttgtctagg
      541 ttctgacttt gtgcatgtca aggtttcttc aggcaggatc cttaggggga aaaagttcct
      601 ctgttcgatc cagatattga accactcttg aaggcgctcc cccaccccca aaaaggcgag
      661 tgcctttctt ttcttcataa ttatgaatga accgatcaag agaaaatatc tatagacaca
      721 gtatctttgc cgagaccatt attgcctttt cagtgtagct tagctcttaa aggagaaagg
      781 atccttgcca ttaggggtta tcaggcacag ccgaaaggct ccaaaacgta tggccctctc
      841 ctacagaacg gaaacaccct gcccacttgc cttctcactc tcagcgctcg tagctttatt
      901 tttcctctga agattttgct gttggcacag tatttgacat cagtgcctaa gttttatttt
      961 ctttatggtt ttttttatta ttaaatccct atcccaaccc aagaactttt aagagaagtc
     1021 aagtgcaaa
//
LOCUS       KCLA01002837             370 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46215upu ultra-conserved element locus uce-3053,
            sequence.
ACCESSION   KCLA01002837
VERSION     KCLA01002837.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 370)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..370
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46215upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>370
                     /note="ultra-conserved element locus uce-3053"
BASE COUNT          111 a           86 c           72 g          101 t
ORIGIN      
        1 ggggagccat tgagtttttc ctaatgcttt cttccattat gggattaagc aggacctgct
       61 cctttaaaaa gtgtcccctt ccccatcatc ctccctcctt ccaattacag cactaatttc
      121 agtaatggag aattaatgga gtaatggact gctgaagctg gcctgaagga actgtagtgc
      181 tcagcacaaa ttgagtaaat aaaccatata ttagatttct aaacaatact tttagtccag
      241 tccccgggga aagagttgtc aagacttact taagtcaacc cagcaaaatg tatgcaaaag
      301 attcacccat tcataccctg gaaaatggca ccagtggcct gaagcgtcgg tggacctctc
      361 agataaatct
//
LOCUS       KCLA01002838             206 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46230upu ultra-conserved element locus uce-7923,
            sequence.
ACCESSION   KCLA01002838
VERSION     KCLA01002838.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 206)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 206)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..206
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>206
                     /note="ultra-conserved element locus uce-7923"
BASE COUNT           70 a           39 c           59 g           38 t
ORIGIN      
        1 ctcgcagtgg tgcaattgac atgagcaaga gggattttgt tgaagaaaga ctccaatttt
       61 ttcagattgg tgagcatact tctgaaggga agtcagggga caagggggaa ggggataaca
      121 gtacagtcac tgccatcaca cagccacagg caggggacag cactgtagaa acaaacctag
      181 agagaccagt agaaacaaca gcagtt
//
LOCUS       KCLA01002839             490 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46246upu ultra-conserved element locus uce-3219,
            sequence.
ACCESSION   KCLA01002839
VERSION     KCLA01002839.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 490)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..490
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46246upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>490
                     /note="ultra-conserved element locus uce-3219"
BASE COUNT          168 a           94 c           88 g          140 t
ORIGIN      
        1 tctcattcat gaaaactata tcaggctgaa tagaagcagg tcaaggctcc ccagttagat
       61 cagtcaagtt tagaaaacag cactagaagc tttctccttc aatgtgccat gtataaacag
      121 cttgcaacat taaaagcata tgagactgtt cacactaaat tatcccaaat agtcttagct
      181 attttgctta ttcatgataa taaagtacaa atattgtgat tgcaagtgag gttgaaatta
      241 atggttttca gaggaacaga acaatggacc taatacctca aatctctgat tgctgacttt
      301 ctttcccttt ttgttccaga caattttcgg tcttggatct cctgtggctt gacagatgaa
      361 tgaggcaact cctccagaaa cccccgtctg gtcaacggga gttcttgtaa actttggtgg
      421 tgctgaaaca aagaaaaaaa taaagattat ctaagcacta aataatggta aaaaaaaaca
      481 agccagacaa
//
LOCUS       KCLA01002840             995 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46262upu ultra-conserved element locus uce-1336,
            sequence.
ACCESSION   KCLA01002840
VERSION     KCLA01002840.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>995
                     /note="ultra-conserved element locus uce-1336"
BASE COUNT          320 a          215 c          198 g          262 t
ORIGIN      
        1 tttatccctc tagaaataag caaaccacag ctctccactc gtaaaaaaaa gagcagagtt
       61 tcatttatgg gtaattcctg ataacgaagt tcctgataat tcagtttgtc agggagcagt
      121 aggacatttt gggctaaatt ttacctgtcc gcagtagttt acatcattca aaaaaaaggg
      181 ttttaaacac aatatttgaa caagacatag gataacaagc agaaggtgcc cgctagagac
      241 atatttagat gctgctgaat acatttacct aagccaatgg tgaagttttg ctcggcaagg
      301 ctacattttc aagctattgt ctcaattagg gcagaaagga ggatactgct tacgactgtg
      361 agtctctgcc tgcattcatt tattgttcag ttcacagtct ctgaatacaa cacaatcctc
      421 caacggagtc agctttcata attcagcagt acaaagtctg caaacacatg taacctagat
      481 ccatatttca cagtgacagc atatgatagc agaatgtgaa gtattaatgc tagtgtcact
      541 acagtcctac actctactgc actttaagag aaagcagctg ctgagatgaa atgtgtgcca
      601 actgtctgaa gacagaaaca taagaaacat tccttctgtt acaaagggag agacacacac
      661 aaacagactt tcttttagac tcaacaagca caaagtttct tactttcgcc tcttacgttt
      721 ctatctccag tctggatgga aacctggcct cgggagcttt cggagcacag gaaggttgag
      781 tgaaggtgat gcatcagttc catggctggg atggtgacat caacccagca cagttctcca
      841 gagtcagtta cacctagaga acacaccaaa tataagatgg catcatccag gtaggagaag
      901 ctttaggagt ttccaggaat actatggcag cttttcaata gccaaagcta acatagaacc
      961 acggacctct taaatcatca agtccaacct tcagc
//
LOCUS       KCLA01002841             656 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46278upu ultra-conserved element locus uce-3318,
            sequence.
ACCESSION   KCLA01002841
VERSION     KCLA01002841.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 656)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..656
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46278upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>656
                     /note="ultra-conserved element locus uce-3318"
BASE COUNT          172 a          179 c          176 g          129 t
ORIGIN      
        1 caacgatgag caaacacaaa accggcgcta agcggccttt cctcctttcc gctccccttg
       61 gccgggcgtc tgcctcgcgc cgagagggcc ctcgacggcc ctgctgggag cgcagcgcag
      121 gggagaggat tagcctcgct aacgtgcgag cggctgcgag agggaaggaa ggaccccgct
      181 actgtacgtg gcgtatgaat aaccaaaatg cacgcgctga caggagagcg ggacgggccc
      241 gcggctcccc gggagaaaat gtagctgtga tgagtgacag ggctttcagg aaatatgttc
      301 acaatcacag acagtgaagg ccatgaccta gatcgtttaa gagcttgtct tgtcaaatta
      361 tcaaaagctt cttcctctct gaataaagag tgacataagt gagtgtcaga aagctgcagg
      421 ctgacaagcc aagcatacaa taacagcatg cacgtcacat acttgccgaa caccgccacg
      481 gctagcggca aatcttaatg agagcgcggc tggcccagga gacttgggtc cctgctggca
      541 cagctactca tctcgcaaaa atccttcagc tccgagtcag ttatggtctg acacgacgac
      601 tacaattact aaacacaact ttttaacaga atcctctggt gctttgtcaa cgctgc
//
LOCUS       KCLA01002842            1077 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46294upu ultra-conserved element locus uce-6975,
            sequence.
ACCESSION   KCLA01002842
VERSION     KCLA01002842.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1077
                     /note="ultra-conserved element locus uce-6975"
BASE COUNT          220 a          320 c          244 g          293 t
ORIGIN      
        1 tcagagggct ctgccagcct cagtgatcct ggaaatgtga ttgacatgga caaacatgaa
       61 cttgtaatca gcttcccagt ttccctgccc atgctccatc agagctccca gcctgatttc
      121 agagaaacca tgtccaaagc ttctgcttcc agttgtcagg cacaacctgt ctgagcagat
      181 gctctcctcc taacttgtgg gagttctgct ctttgcctca gacagagagc actcagctga
      241 gcacctagac cctccagaaa ggccttcctt cctccgtgaa gtcctaacac ctcaaaacac
      301 tcgaactcca cgtcacccat cagcgtattt actgctgcag agtgaaggag ctggagcatg
      361 agggtttgta ttgtcaagct ctgctgtgga cgttcctcgt cctgccacca tctaacatct
      421 ctagttatgg tttgagtcct tctgcagggt gtttgtgcct ctgttctgtt ccaggagtaa
      481 cgcttggctt cctctgtttg taggtggcaa tcaaatccat ccgtaaggac aaaattaagg
      541 atgaacagga catggttcac atccggcggg agatcgagat catgtcatcc ctcagccacc
      601 ctcatatcat caccatatac gaaggtcagt gattgtgatt ctcctcccta acggctctgt
      661 cgtgctcctg agagcctgac cctcgtgttt gagaccctgt gtcacaccga cccctggtgt
      721 aacccatccc ttaccaaaga gaccgtgttg agtgctgcct ctcctctgaa gcaccagtgc
      781 ttcacagacg tggaacctgc ttcctgtagg agcttctttg ggtgtgagtg aggtgcaggt
      841 gggaaagcac gtgtgacctc gtctccttgc tcctgatgag tagttcagtt tgatttcctg
      901 ctctctcctg caccagccag tccccagccc ctgatgcagt ccatgtaagc tctgttttcc
      961 ctcaacagca caacctctgt ttgctttagg cctgtggtcc tcccgtaccc gctgggtagt
     1021 cttgctttca ctgctgctct gaatcccatc atccacctcc tggctgctcc tgaggac
//
LOCUS       KCLA01002843             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46310upu ultra-conserved element locus uce-2578,
            sequence.
ACCESSION   KCLA01002843
VERSION     KCLA01002843.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-2578"
BASE COUNT          308 a          200 c          165 g          270 t
ORIGIN      
        1 ctctcaaaga gccaaaacaa ctggttaatt agtgttgctc acatacagtc aagttttatt
       61 ttaataaatg gcctctctat agcagctctg aataatacat ttatttcact gacagaacaa
      121 agaatattgg gcacgtgaac atgaccacat attaagcttt ccaaccaatt cctgttaagc
      181 tttgaatctc tggccaattt ggaggcagaa aggcagaata gcctacattt acacacagaa
      241 gccagcgtgc attttgtaaa cattgtgaaa caaagataat tatggtatgc accatttccc
      301 ttagcctcct gcaaataaca tttatataat ttagaaagca attcaaacca agtttcagaa
      361 aaaagctttt tggatacatt ttgtataatc taaaaaagcc attatggcat ataaagggtt
      421 agtgctcaaa actaattggg atgttttttt tcccccagca aatttggaaa tgaactgaag
      481 ctgctccctg gtgtgaaagc tgaatccagc agccacctgc aggatcagcg cccagtgctg
      541 ccagatgcta caaagccttt gatttccagt agcgatttca gacacattta actcatgtga
      601 catggactaa ctggaatagc atattcaatc acttcacacc tttaaaaaaa atacaaactc
      661 tggcttttct gctttctata tatgaaacag ctgcagcaga tagactcatt cagactcaca
      721 gcttgggccc tggttttctt aatgacttcc atgatggcat ccatgttgag gtagcttttg
      781 ctggtgggag ctgggccaac acagacagct tcatccgcca ttttcacatg aacctgaaga
      841 ggcaatattg tgcattaaca gatgctccca gcaaaagtaa ttaccatcac cctgaaatat
      901 gcacacaaat ttgattgttt caaagaaaat ttaaataccg taa
//
LOCUS       KCLA01002844             965 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46326upu ultra-conserved element locus uce-3320,
            sequence.
ACCESSION   KCLA01002844
VERSION     KCLA01002844.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 965)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..965
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46326upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>965
                     /note="ultra-conserved element locus uce-3320"
BASE COUNT          272 a          195 c          196 g          302 t
ORIGIN      
        1 acttaaggcc tgctaggctg aagtttcaca agtaagattg gtgaatatta caggggctcg
       61 atgctgttgc aatcgactca gccccattaa agataatggt gtgagcattt ccgtgctgtc
      121 atcatgttac tatcaacagc attatcagta tcaactgctt ttacaattat gcacaatggc
      181 tcttcctgca caaagactta gcaaccacca aactcgtttt ctttttaaat acactgaaaa
      241 gagcgtggat ttcaatcctt cgtctgttcg cagatgaaac aacatttcca aatcatcact
      301 gatagcattt ttttcctccc attctaagga tggccaactg ttctcagcaa tttctattac
      361 atttcctacc tattatttca tgtaatggca ttccttaaat tttaaattag ctttgaagaa
      421 taaaaataat tgaattcctg ctgttttgtg tacatagagg gtgacaggag ctaatgtgat
      481 aatttaaact gtaaatgagt cttcactttg tgttcattaa ttacagctaa ttactgaatt
      541 acaaaccttc ttggttaggc actgttatgt attcatgtag catgttggat ttccagctgg
      601 tagaaaactg ttttatagac ttacaagctg acacaccaag ctaccactga aacaattcag
      661 tctgaaaaat agagggaggg tggggggtgc gtagctgctc ctgctctttg aattgagtga
      721 tgagaaacgg tgctgcaaac ctgaacctca ggtgagcgag gatctcgcgt atataattag
      781 aaaatatact ctgtgtctga taggcaggag cgctgcaatt ttgagcttcc actttgggtg
      841 aagagcacga gtctgctctg cttacacctc ttttacacca gcactaggtc cctgattttg
      901 cagttgccct ctttatagag gagtatcagt gaggcagaaa tacccctgta aggggccagt
      961 gcttc
//
LOCUS       KCLA01002845             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46341upu ultra-conserved element locus uce-421,
            sequence.
ACCESSION   KCLA01002845
VERSION     KCLA01002845.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46341upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-421"
BASE COUNT          183 a          173 c          169 g          226 t
ORIGIN      
        1 cagagctctg cccaagttaa cccgaagacg gcgcctcccg cttcacggca gcacgagcgg
       61 ctgggtctgc aaagccctcg gtcaccgctt cgcattcttt tcgggggaaa aaaataggct
      121 tctgtgctct agttttcaaa cgcaaaggta tgatgttatt tgtcaccgtg cccaaaaaag
      181 tccttactcg gtaactttgc cagaagaggg agagagagag aaggcaaatg ctcccccagc
      241 tgtttcctgt ctacagtgtc tgtgtaatgt agataaatgt gaggattttc tctaaatccc
      301 tcttctgttt gctaaatctc actgtcactg ctaaaatcag agcagataga gcctgcgcaa
      361 tggaataaag tcctcaatat tgaaatgtga cattgctctc cacatctccc atctccctgg
      421 atttcttttt tctcatcact actgctaaca aatccatttc cagactttgc acttttaaga
      481 agccatggaa aaattcagca gcctgtcacc acaattagtt cagtgctgct tttgtgattt
      541 ctggaaggta aatctttatt actctttcgc ctgctcgggt aggtttgctt tgctgtctgt
      601 tgcctgcttc tgatttaaga gcattgtgcg cttttttttt ccgagctgag ggttatttat
      661 aaactgctga acgtgcaatt cgatgggatt cggaaaatgg ctggatggaa cagttgcagt
      721 tacctagaga actgtggagg tgaagcgctg c
//
LOCUS       KCLA01002846             799 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46369upu ultra-conserved element locus uce-5922,
            sequence.
ACCESSION   KCLA01002846
VERSION     KCLA01002846.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 799)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..799
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46369upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>799
                     /note="ultra-conserved element locus uce-5922"
BASE COUNT          264 a          137 c          147 g          251 t
ORIGIN      
        1 agaaatcatc ataagtttgc tgtgtcctca caatagtttt tctttccccc tttcagaaga
       61 gaccttaatt tggctgctaa tgaaatacaa gagattgatt gcaggaaact tgcaagggca
      121 tatttactgt accacataga ggaagcccca ctgggggcat tagcatttag ccattttatg
      181 caaatcaggt gaaaaagtga ctcatgtata tgatttaata tgcatcagcg ataacttgcg
      241 acgtcctcat aagaagaaag gaattaaaaa tttattagaa aactagactg gtgtcactac
      301 atggttaaaa cattattaaa gcatatttta gtgttttgct tacatcagtg ttctcatcat
      361 ggtgccacca tttcatgaca aagagtgtag aggagaaaac attcaactta aaatgtctgc
      421 tggcacacat cgctggattt gtatgtcact aaacaatgaa tgagcatagc cttgaatacc
      481 aactatttaa ttagcacttt tgccagccat gcatagaaaa tagctcattt acatgcgtca
      541 tgcttagtga tttttgccac aaaaagctac ctttgtttaa tgtgtgttgc attctggtac
      601 gccaatgcga ggaaatgaaa gcatacgtta tttttttaga agccttagaa ttcagagatt
      661 taattaaagt gcgtaaagtt tttatatttc tcttcgaggt atattttaat tatttaattt
      721 aaccttaagt gcactataaa aggctggata caagcgataa ttaagaactt caaagggcag
      781 gagaaaccct ctaacagtc
//
LOCUS       KCLA01002847             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46385upu ultra-conserved element locus uce-3736,
            sequence.
ACCESSION   KCLA01002847
VERSION     KCLA01002847.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46385upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-3736"
BASE COUNT          190 a          126 c          116 g          154 t
ORIGIN      
        1 gccccaccca gcctgaccgg ccctcctagc ccggcacaaa gcacactgcc cctattcttt
       61 cagcctttgt agccatatgg caaatccatg tagacacagc caacatccat ttattcaggc
      121 acataatgtc ccgcaacagg gaacaattgg aactttgttt gcttctatta ttgatgcgaa
      181 tgggcgacag agagagagag agaggaaaaa aaatcattta actataagag atatccagct
      241 aattatgaac catatgtgcc tatagtttca aagcaatcca atgaagttca ttttaaatct
      301 agactacttt attagtacag aagacagatg tctcaacagt acatgcatca gaggaaacca
      361 tgtaaagaag ttcttgaaat atttaactgg gactcattca ttgttagagg agttttaaag
      421 tgccctttat catgagaatg cataggcagg agtggaggga ggttgccagt tgttaccacc
      481 aacccactta caccttagtg gtaagtccca agttccactt cggatttgaa gacaggaata
      541 tttttcaaaa gattcaaaac atcaggagtt ttgaaggacc aacctt
//
LOCUS       KCLA01002848             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46401upu ultra-conserved element locus uce-7559,
            sequence.
ACCESSION   KCLA01002848
VERSION     KCLA01002848.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46401upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-7559"
BASE COUNT          165 a          149 c          141 g          163 t
ORIGIN      
        1 cagcgctcag aggaaggaga tgagcgagca cgctgcctgc cgcaaatatt gacatagcca
       61 ttacgggcgc gtgtaaaacc cccgtcggcg tggcgcgagg cgatactctc tgaatacttc
      121 tgtctcgagg aattctttat tttgccatag aagaaaaatg ttttcatatt ctcccctgcc
      181 gttcagacct gcaacccagc gagccctttt gcccttgaga gccataacgt tatttgttaa
      241 catttttatg atgccaaatg gtctgtgcga gagcgggtgc cattctttag ctgggaaacc
      301 atatggcacg ccgcgtcata aataaggtat tgtgatagtt aatgaaccta attgctagca
      361 aaggctttaa tacggggaat gtgctgctga gaatttagca ccacattaga gatgcagcag
      421 agctcctctg acttctgagg cttaatttaa gttctatatt gcaaactcca gaaaataatt
      481 ccaaaccctc ctgctggaaa agcaacctgc tggtagactg tgattatact gaattactaa
      541 aatcgcaatc aattttatac actctgttaa cccttgctgg ggaacccgcc tcgccgctct
      601 gaagaggcgc ccgagccg
//
LOCUS       KCLA01002849             742 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46416upu ultra-conserved element locus uce-6721,
            sequence.
ACCESSION   KCLA01002849
VERSION     KCLA01002849.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 742)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..742
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46416upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>742
                     /note="ultra-conserved element locus uce-6721"
BASE COUNT          191 a          177 c          185 g          189 t
ORIGIN      
        1 ggagcagaat gaggagtcgt gggtgaggag aaccttttcc caggggagca gtgagtgaga
       61 gtgagtacat gctcttcaca tgtgttcaca cctgctgcgc tctcaatcaa atggggatga
      121 aatgtcatgg tagcagccag tggctgtaaa acgtggggtc tacacaaaag ggaaaaagtg
      181 acgaggagaa aagccaggtc ggccccacct tgcggggtct gctctggaat gtgtttgctc
      241 tccggggtgt gcagcgcctg tgagcgcatt agcagtagtg ttgagttagt aacacgaacc
      301 cctcacaaat acctccaggg cagccagctc cgtttcggcc cgtgtttatt taataaagag
      361 ccagtgaagt aactgcaatt tcattgtcaa tttactaatg cgttacagtt atgtttctca
      421 acctcattgt ttgggctcgg gagcttgcag tgcctggcca aaactttccc tctccccctt
      481 attcctcccc gcaagtgtaa aacacatttt attatgacta gaatgtcttt gatttatcaa
      541 aaactgggat taaaaccctc aactccccct ttccacacat atccaacttg gcagcaggtt
      601 ggtgtattaa cctcctaaaa gccacgctgg cactttgcct tttaaagaga agtaaaacca
      661 cacacggctg tgcacacgtg gacaccgcgt tttgaaagtt cacctgggta gaacacagtg
      721 gaaactctgc ctggggtggg at
//
LOCUS       KCLA01002850            1019 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46431upu ultra-conserved element locus uce-5917,
            sequence.
ACCESSION   KCLA01002850
VERSION     KCLA01002850.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46431upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1019
                     /note="ultra-conserved element locus uce-5917"
BASE COUNT          253 a          224 c          270 g          272 t
ORIGIN      
        1 gggatcacag cgctggtcct tcccatcttc agaacttacc cccaagaacg ccgcgcgctg
       61 tgacatgcag tgccttaggc cagggagggc tggttccttg agcccttctt tggccacgag
      121 agacagcgct tcgtcccccg ggctggtgcc gaacaggcag cgtggagggg gtcgcgtcgg
      181 ctgcctgtgg ctgttctgca gatacctctg tattgagata tttaattctt agccaacgaa
      241 gaaactgata tcgaagcaaa gctccaggaa aaaagggctt ccgagacgtt agagattttg
      301 gaaatgtttg acactgttag cagcatcagc tcctgacaaa agcccttctc tccggaaaat
      361 ccttcacagt tgtgccaaga agagcagctt cggcggaacg ttttcataaa ctatcatcag
      421 ttatgcagca gcagcttcac aaatcagaaa tgatatcttc aggcactgct gtcaagtgtt
      481 attcaaataa taccagcctc acatttgaat aacagcagac attttgaatt aattaatcag
      541 atgagatagt ctaggccttt tctcattagt ctctgggtca ggcctgggaa gatgtatgcg
      601 ctggtgatga tatacctgtc tttaatggtg atttatgaag atttaggatt gtgtgtgatt
      661 tgtcaaaggt tctgggaaaa gcctggtgca tatttcatta cctaatctga gatggatttc
      721 gtgatgctga gagatggagc cctattgctg ggggatgtgg gaagcgcagg taggacggca
      781 tcccggggtt ttactggctt atctttgcga ctgtcaggca gtgctgtaaa cttttactgc
      841 ccgcagttaa cggctcctgc tttaattata ggcaaattcc tcatgctgtc cagaggggaa
      901 gcttcagtag ttatttggtt aaaaagcaga acagacccca tagctgtggc ccggtgtaaa
      961 tcgtgggcga agctggcagg gcgcatggct tggccacggt gaaaacccag aatttcatg
//
LOCUS       KCLA01002851             946 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46447upu ultra-conserved element locus uce-6989,
            sequence.
ACCESSION   KCLA01002851
VERSION     KCLA01002851.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 946)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..946
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46447upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>946
                     /note="ultra-conserved element locus uce-6989"
BASE COUNT          285 a          167 c          176 g          318 t
ORIGIN      
        1 aagtattgct taataaaagg atgttcttag taggaaaagt attacctgta tcttgcttaa
       61 tgccagaggt tcacaacagc atttagctac agagaaaatt gagtgaacaa atattttaat
      121 taacctcaat tattatgcgt catgccctct tcattaaata gatctaacag agagaaaagc
      181 cagttgtttc taataatttt ctagtccttt tgtggtttgt atacttcagt gttctgaagg
      241 tcagatagaa ctaccagacc ataaaatcca gccagtgaga gatctggagc taagagagct
      301 caaggattta ttaagtgatg tgaaactcta ttgttttgtg catgtgttac ataattgctg
      361 tcaatgcaag gctgttaaaa ttccctgcta gtaataacac gaataccatt ttatagcttc
      421 aagaggagat aaaagaagtt acttagtcag cacttcaaca atatcacagc acatgtcagt
      481 tttattattc tggggccttc agttttggca gatgctctcc attctggctg tggtgtggta
      541 attaccatat aaattaagca gtgaaataag ctgagtgcag ccttatccct gctgcctgta
      601 accaggttgc aagtaccgca gtgtgaaata ggcatagttc aggctgatta tatctagaag
      661 gccacttttt gaaatgctgg gcctttatct cctttcaggt caattttaaa gtaaattgaa
      721 gctgtttagt tgctttgcaa acagaaggat cattcttttt gcacaaggta ctccccataa
      781 tagcattcca ggaattagtt taatccatcc aggtttgatt catagtcact aattacattt
      841 cagcatacat tctaatactt caaattatgt gtgtccttac tttaatgagt tgtaactagt
      901 ccttaaattg ggagctttgc acttttattt ctaacaggct ttactt
//
LOCUS       KCLA01002852             897 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46463upu ultra-conserved element locus uce-248,
            sequence.
ACCESSION   KCLA01002852
VERSION     KCLA01002852.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>897
                     /note="ultra-conserved element locus uce-248"
BASE COUNT          268 a          142 c          157 g          330 t
ORIGIN      
        1 tgctttctgc aggtttatct gtacctgcgg tggtgtgtag ttatgcaagt gttgttcgca
       61 agataaagac ctaattctct ctagcctgga tcctttgttt tgttttccaa accaattgta
      121 aataagcttc tgtatatcag aacgtgcata gcaaacttta acaaagagct ttcctctttg
      181 gatttctaaa ttggttttta gagcaatctg tctgttgcca ctttatctat ttaaacaaac
      241 acgataacag aaaaatgcag ccatgaactg cagtgttatg aaacatgaac tgttagagtt
      301 aacacaactg ttaaatctta ctaatgattc tatctccagt aaaatacatt agcaccaata
      361 attttattaa agtaggtcat tcatctagaa taaaaaggta gaagaatgtg aattaaatgc
      421 caagcgtgct aactcccctg tacttgttaa cattgaatgt gatgccctgt aggccttcct
      481 cagtatcgtt aggaatagat tacctgtcag gaatatgtat ggcatattca aataagcact
      541 gcgcatattt ttaaaactga tatgatatga atccatgtag accaatttta atagttcaaa
      601 atgagtcata attcttgtta acaatacagt tatttttaaa atttgcagca atagtggtcc
      661 ttttttattt tccttattga aattaaatga tatgccttag gtgagtcatt catcactgtt
      721 aaaggaactt gccttctgtt ggagttttgg agtttttatc cacatgtata atgcatttcc
      781 taccattttt agttgcgttt ttctacgtgt gagtagctag atgtgttttt gcatggtttt
      841 aaacagcaga aatattttgc taaaatgttg tgttgatgtt tttgtttgtg caataat
//
LOCUS       KCLA01002853             822 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46478upu ultra-conserved element locus uce-615,
            sequence.
ACCESSION   KCLA01002853
VERSION     KCLA01002853.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 822)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..822
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>822
                     /note="ultra-conserved element locus uce-615"
BASE COUNT          288 a          150 c          137 g          247 t
ORIGIN      
        1 caacaccaac tagacgagac tgatcagttt ggtatctaag ttttagttgg caagaatgcc
       61 aaatgtcagc ttttgaactc ttcattatct acatttaact atttcaaggt aaaaaaatag
      121 aaaaaaaatc aaccacacac ataccaaggt taatctccac actgtcctta atgagtgagg
      181 taagcatgaa gtaatacctc ttttaaaaac agcagaagta aaaattaagt ataatgagag
      241 cacatcaaga aacaaactac aatttctgaa ctgcactgtt tattttgctg cttgaaacct
      301 aagtgacagt atgccactat aattatgggg tttcttctaa acctttacta cactgcaggt
      361 acagaaatat acggacacat ttttggagaa ttgacatttt gcaaaatgca gcaaacattt
      421 caatttatac atgagaaaag gaagtgttca aaagggtatg catttcaagt tattgccggt
      481 tatttctgtg agagaatttc tgcaggtaaa acatttaaat ttaaccaaca gtaacgtgtc
      541 agtgtattta aaatcatgac aaagatctct tcggtcatta attgcccttt gacgaattgc
      601 taggatgttc tatgtttagg gcaagatgac aatacagcat aaatcccgtg acattttggt
      661 ttacttctgg agattaaagc tgttttttac ttgggataaa tgcagcagca aaacacaaac
      721 cagttgatca aaaaagcact tctgccataa ctccaataat ttcaggacac accaaccgac
      781 agtagttttg ccattcccag ttcttttaag gtttacatca ct
//
LOCUS       KCLA01002854             966 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46492upu ultra-conserved element locus uce-6314,
            sequence.
ACCESSION   KCLA01002854
VERSION     KCLA01002854.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46492upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>966
                     /note="ultra-conserved element locus uce-6314"
BASE COUNT          303 a          201 c          176 g          286 t
ORIGIN      
        1 tggcaagtgt tggcaagtag ggaagactgt ctgagtattt aagcaaagat tgttccagtc
       61 ttacaggact tatcactcct ctagacttac tgccaccaca cagaatgttt ttattaccct
      121 ctcattccca tatttctgct acttaatgag ctttagcctt tgtcacctac agaaatcctt
      181 cacccagact acgatcatta ggtcacagat gctggttcag tcagtagtgc tttgttttgc
      241 ccatcaaact acttttaaag gcagatggca cattgctagc aatgcgacag atccctagtg
      301 gccacagcat ttctcctgac ctgctccaaa cgtgcttgat tccagctgaa gataactaga
      361 agatccccaa gagttaacac agtaccttca ggttattaag cataacatga agaacattac
      421 attattatgc tacacatggc taaggaattt tagtattcac aggattatgg taattaagtc
      481 ttccttcact ttgggtgatg tgacacttgc ttgactataa tgtcactcca cttaaagtct
      541 gtgtaaacaa cattatctta gtcactctgc attacatttc caactgtgag caaaattaca
      601 aggtcaaagt ggacaagaat gtaggtaatc ccaaggaaac atcatgtaaa tgactagctc
      661 aaggttcaag ctgggttttc aaggacggta aaaggctttg tactacacca gtatttcagt
      721 gatgttctgt agaaggtatc acgagctaaa cacatttcca tctgtaggac atttagttgg
      781 tcaaaccact gcaaactttt ctaagtaagg acctggctta cacaaggagt aaaaacaact
      841 gattttgtac aaaaggctgc gtgtaactag cataatatta attgactcta tcagtgatgg
      901 atgaacacaa taaaatatat actgcaatga cttcattagc atagtgcaat gaaatctcca
      961 ttaaac
//
LOCUS       KCLA01002855             854 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46508upu ultra-conserved element locus uce-7748,
            sequence.
ACCESSION   KCLA01002855
VERSION     KCLA01002855.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 854)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 854)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..854
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46508upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>854
                     /note="ultra-conserved element locus uce-7748"
BASE COUNT          258 a          165 c          176 g          255 t
ORIGIN      
        1 tgtagctaaa tcccatatac atttcaccaa ataatcctgc tcagaagatg gtatcgtatt
       61 cttgcacagc agggtgtgca aatgcctata aatcaaaaca cagaatctga aatatctgta
      121 aaaaatatct gtgcaaattt aaccatgacc ctttgccaga caataggcct tcatatgctt
      181 tgcagcttag cagacagcga ggaattttgt ttggaagtga tagctactgt ctatgtaata
      241 tttaggacct attcatggag catctggcag aaaataaaag ggtttcctac tctaacatat
      301 gctaaagaag gatgtggtcc tgtgcctgct cctcctcttc tgactttttg caaatagcgc
      361 aacataagag acagttgttt ctggctgccc tgctgcctgt catggctgtc aagcgaaatc
      421 ccatgaatta ttgctcttcc agatgtaaga gatttccaga ctgccttaaa ctgcctgtgg
      481 tttgtggtac cagagaggag agaaatgaga ttaaacttca tctcatcagt gcaatctgaa
      541 aagatcacac agaggactaa taatcacagc ttttacattc cagagccgga cctgagagct
      601 gtgtggtttt gtttcagggc tatgtcacat taagcttgtt ggaagacatt gattaaggtc
      661 aaacaatgct tgaagatcaa aaacaaaatt tttaactctg tgtttctgca tacattttgc
      721 attcttcaga tagtgtcatg tattgctttg gctggctgaa gcaggagagg ctctgaattg
      781 agttctgtaa ttctgagatg tcagcacttc ttagcagtag cttatgaaag ataaaaaagc
      841 aaatgttcac caaa
//
LOCUS       KCLA01002856             507 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46524upu ultra-conserved element locus uce-4640,
            sequence.
ACCESSION   KCLA01002856
VERSION     KCLA01002856.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 507)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..507
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46524upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>507
                     /note="ultra-conserved element locus uce-4640"
BASE COUNT          143 a          103 c          129 g          132 t
ORIGIN      
        1 taaaaggatt tcccgggaat ctctgaagga gaaacagcct ttcaagctgt gagttttcgg
       61 gaagcttggc tggattcttg gcattcggga tcatcggatg cccctgcccc ttgcgcgctc
      121 gcctggcgaa ggggcagaat ttgggagcct ctggagttgg agcaaaggta gagggaacat
      181 cctgatgaag taaaaggagg agtaatttaa ttgtctaact ccttctgtgc tcgagaatat
      241 cagacagatg gggaggataa aacaaggagc tcaataatta attttcatgt tcctcactgg
      301 tgggacctct ttaatccctg ttcctgtgat tacagagaga ggttggattc tgaagtttca
      361 ctcattagcg ccgcgtcgca cgaaaatacc tgccttttca aaaggaacag aggcaggaat
      421 gaaaaattcc cgctattaaa aattatcttg gtgtcaggga ctttcgtgaa agaacaaaac
      481 ctctccgatt ccctcagata aataatg
//
LOCUS       KCLA01002857             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46539upu ultra-conserved element locus uce-7913,
            sequence.
ACCESSION   KCLA01002857
VERSION     KCLA01002857.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46539upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-7913"
BASE COUNT          264 a          257 c          223 g          249 t
ORIGIN      
        1 ccccaacaga atccctgatg ctggtgacac tgcctaactc aaaagtcaca cgtggcgagg
       61 gcacgagtga ccagtcaggt ggtctgggct taagcagctg cagctgctgc tcttagtagt
      121 atttcacccc ttcaggattc actagcagtg aagaggtaaa aggctgcaca ttaagcagtc
      181 tgtccaaaag ctatgtgcat agcaaactca taccagcttc tacacagcta ttggttttac
      241 ctctgcagct ggactgtttc cagcataagg cttttagagt gactccagca ataaaagaag
      301 cctttggatt tttcttgttt tgctcaaatc cactagccat gctcaaaaag aatatttctc
      361 cacggtttgt ttttacacgg tggctagcag gcaccttagt aaccagccag aaatccgttt
      421 caaccaccat caacccctaa actacagtac caggacggtt ggctaaagaa aggaaactga
      481 ttggctgtag tctgaaactt gcctagtaca aggtgtctgg ctgactttgt cctaaataag
      541 gctaacatta gtgaactaag agaacagcat ttggttgcag tcttgcactc aggagcatcc
      601 ttcgccaatg cgctggcaag atctccctac tttccgatcc agtttcacca ttttcataat
      661 ggcttcctca cgcccgcgtc ccatatggtc aaacgtgcag tcgtgttgct ccggcaggcg
      721 atgtaacatg cagaacacgt aacctagcgc agagagggga ggcgtttggt caaagtggca
      781 gaacctcacc cgaatcaggg ggattactca cagctcaagc gtcgtgacag gggtaaagcc
      841 tttacgcgtc tcccttacag ggtgttcata aaggcctgat tatttaccag atttatcgat
      901 accgtcaacg ctcaaggcac gctacgttca ggccattctc tcatctgatc taggaagccc
      961 cccaaattgt ctaaacctca cacagggacg agt
//
LOCUS       KCLA01002858             312 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46555upu ultra-conserved element locus uce-4827,
            sequence.
ACCESSION   KCLA01002858
VERSION     KCLA01002858.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 312)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..312
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46555upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>312
                     /note="ultra-conserved element locus uce-4827"
BASE COUNT          113 a           46 c           56 g           97 t
ORIGIN      
        1 agaaaatgaa gattgtaaaa acgtcacata aagaaaaaat gcacagtgaa ttcattttgc
       61 gatgctcata attcagtaat gcctttaagt agctagaaga aatataataa atgtttttcc
      121 acaacattga tcatactgta tcagaggaaa tattagtgtg cagggagcca tgattatgct
      181 ggtagtaatt ctcagtgcag aaaactccta gaagatggga ccctttatag gttgaacttt
      241 tattggctgc agttatttac ctttaagaat acacctaata cactgtccta tagctaaata
      301 tttttgtgaa aa
//
LOCUS       KCLA01002859             967 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46571upu ultra-conserved element locus uce-1094,
            sequence.
ACCESSION   KCLA01002859
VERSION     KCLA01002859.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46571upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>967
                     /note="ultra-conserved element locus uce-1094"
BASE COUNT          293 a          156 c          177 g          341 t
ORIGIN      
        1 tctgtatttt aatgatattt acacttcaca caactaaagc aagaaacatt ttacatcacc
       61 ttgcatgcag accagttatg catctagagt agagttataa actatggttg caaactaggt
      121 tgcaaacaaa ttttgcctga ggcatgaacc ataaattaaa gtaataatca tctctgtaag
      181 agacaacttt tcttcactgc tcttttaata taaaaaagaa agtaggtcag agaaatttag
      241 gatattttag aatatgtact gtattgtatt gtttgccagc acctaattta caattacaga
      301 gctacatgaa tattgaaatg attcagcttc ccattataaa tgtatgtggc agtttggttg
      361 ttgatcagtt tatgaagtta atgcaaatga aactgtcttc ctgtcagcat ttgaaatata
      421 taatgcagtc atgttgtata ttcagggaca ggccattgac agtcaattaa caagtttgat
      481 tggtatgtca actcattctt ttgaattgtt aatagtatgt taatagcatt catttctttg
      541 tgcagtccca tttgcagctt cacagttaca gctatttttt atgattctga gtaacctaaa
      601 atagtgcctt aataatagat tattaaacac ctgtctggtg tagcttaggg aggtttttct
      661 agactgggag tttgcagtgg atccctttga tattcaaatc aacaaatgat agccttttta
      721 ttcaaaacgt aagttctttt gatggttagc ttgttaagaa atattcagct ccagtctgac
      781 ctgatctggt ttcccatgga aaagatctga tgctgtttga aggttcataa atggaatgcc
      841 aatgacaatt tgttgttgac gttttgctgc ctcagccttc agatgctgct ggttgatgtg
      901 ccgctttagc ttcaccaaat aatgcttgca ggtaaatgat cttctgattg atcagatact
      961 ttcaaag
//
LOCUS       KCLA01002860            1115 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46587upu ultra-conserved element locus uce-6383,
            sequence.
ACCESSION   KCLA01002860
VERSION     KCLA01002860.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1115)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1115)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1115
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46587upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1115
                     /note="ultra-conserved element locus uce-6383"
BASE COUNT          284 a          239 c          265 g          327 t
ORIGIN      
        1 ggtgtgggga aacagagaag ctccatcctt gggaccttat ttcaaggctg ctgttgttgc
       61 catgctacct gtcacagatc attgtttccc taaaactcct gtagaagctg tgtcactgat
      121 aaaaaattaa ttgctcttga ttgtcacagt ttctcttggt tttcaagtat gtgggttagg
      181 ccagctgtct cctagattat caagagctat tcctaaatat ttgatttggg gggaggtctg
      241 tgccattctt tgaagaacat ggttgactct gttccctcag ctaacagctc cttactactc
      301 tgtttcactc tccccatcca ccccacccat tcccccaggt gatattttgc taccagtaaa
      361 atcctgacct ggcagtgaga gattgtatga gtggttaagg ttggacatag cagggaattg
      421 tctgtgtcta tcactgtgtt gttgaactta gagaaattaa aagaagacct ttcgaccttt
      481 gatcaggtct tgacaagttc ctgctttttg cccgaaggat ggatatccgt cggatcagct
      541 ttgacacaga tgacttgtca gatgatgtta tcccacttgc tgatgttcgc agtgctgtgg
      601 ctctagactg ggactcaaag aatgactatg tctactggac agatgttagc accgactcaa
      661 tcagccgagc gaaatgggat ggatcgagcc aggaggtaca gtgttaacta tgtgtggagg
      721 gcatctagcc aggagactcc ctgagtatca gatttgaagg cataggaata cattgtcttt
      781 ccaaggagct gcaggaggag ctgctcatta gtttgcctag ctgtggctgg gtagatcctt
      841 gagatcattg aacacttcac acagcagtct ggtgtacatc cctgcttgta tgtaaaactt
      901 tacgctggga cacagggcac tctggtttga agtagcccaa aagactgaaa caaggaagta
      961 ctaaatcctc tgcatgtact acctttggag caagatccag tctccctggg gttacttttt
     1021 gcatgtaccc ctaagctaac gttgccgtaa atgatggaaa cagagttaaa agcttggagt
     1081 tgcctttcga acagatgcaa aaataaatgt ttctc
//
LOCUS       KCLA01002861             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46603upu ultra-conserved element locus uce-4426,
            sequence.
ACCESSION   KCLA01002861
VERSION     KCLA01002861.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46603upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-4426"
BASE COUNT          236 a          136 c          150 g          202 t
ORIGIN      
        1 gaaagaagct caccaggcag gacagaggct ggagcctggg tccgctcagc cccagcagtg
       61 ctggctcaca agagctaaac ccaagtgtaa tgtgtccctt ttaagcaatt tagtcagaat
      121 gctgctgcat tcacagcttt tcaagtattt ttaaatcact tacaaaagca ggattaaatg
      181 atcaggaatt ccatttaata ggacaaataa agaaataaca atctactcga tcagccctgt
      241 gaaaggcagg tttgatttaa ggaataaaaa aataagtata aaagagggag agaataaagg
      301 aaaagggtgt ggaaaaagga taatgtgtgt ttactcaagc aaagaaaaaa atatttaagt
      361 gatgtagggg agaagattgc ggtaactagt gaagaataac atcgtctgct ttgctgtcaa
      421 atcacacaag aatttcagta atagattctc attctgacac tcaattcaat tcgaaggtga
      481 tcctgcttta tcccaacaca tcaaatatta aacactcgta ttagccaggg tgccgtcgcc
      541 tttcccagct tagacgcggc aggaagcttt tccccgactt tctctcactc actataatat
      601 tctcaatgtt atctaaacat gccttcatac actggggttc cttatcaatc ccatttgggg
      661 atggggtgta cttagaacgg tattagtttg gggggctttt attattatta aagcttttca
      721 attt
//
LOCUS       KCLA01002862             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46618upu ultra-conserved element locus uce-7694,
            sequence.
ACCESSION   KCLA01002862
VERSION     KCLA01002862.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46618upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-7694"
BASE COUNT          146 a           72 c          110 g           94 t
ORIGIN      
        1 tagaggtgct ggcgtgctgc agcaagatga cactaaaagc aggcgggagg tatcgtggag
       61 atggagggca acaaagacag caagagaaat caaataactg aaggggaaaa aaaaaataga
      121 ggggatgctt tttattagcg agtctcgagg gaattcattt catcagtgca gcagggcatg
      181 agcaaagcag caatgaactt gaaagtgcat tatacccatt aaaggcatga attttctaaa
      241 ttgctaatgg ggatccgttt tacactcgga gcactaacct gaacagctct tgtatggctg
      301 gttccacggg aactgcagag agatggaaaa tatataaaaa tttatcatct attacaagga
      361 cccctcttcc acagaaaatt accagaaagg ttgtgttaaa gcaggggtca gaatgaatcg
      421 cg
//
LOCUS       KCLA01002863            1009 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46633upu ultra-conserved element locus uce-2605,
            sequence.
ACCESSION   KCLA01002863
VERSION     KCLA01002863.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1009)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1009
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46633upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1009
                     /note="ultra-conserved element locus uce-2605"
BASE COUNT          275 a          218 c          234 g          282 t
ORIGIN      
        1 agaaacatta aacatgcttt tcccttgaca gggtcagaga caactgggaa acagctagca
       61 cgacgctgga gcagaaacgc gcgtgcggcg tgggcgcgtc ttccaggcac cgagcctgga
      121 acggaacagg agttctctgt aacatttcgg aagccaaacg tgtgtgcaca gccacacaaa
      181 cctacagtct ccaccgcctg gtttttattg actgcgatgc gaaaccacca ctttgctccc
      241 tcagcagtat ttctgctctt taaaaccccc cttctgaagc tgcttcgtgt ttgttttcaa
      301 agccttctcg taaaatgttg gtgggtcgtg gggctgtttt ttgacagcag aaataagaaa
      361 ccggctttcc atttgggtta gaactgagat gaaatgagga atggctgctg ctaagcagaa
      421 aatttgctcg ctttatgtgt gccagttaat tacgacactt cagaggcgct tctgaaagga
      481 taaggcgagc tgcataaatt tagctgtaat ccaggcaggc aaaactaatt tgcaggggat
      541 ggccttatct agctgctgca gctttctcag aaaattaacc ttggatattt gggcccaatt
      601 cagaaagtgt ttgatttttt ccccttccct cctcagcata agagaattct aaattcaata
      661 caatacctga cttttaagag acactaggaa tgctagaggc agttgagagt tattcctgac
      721 aagcagaaac acacatttcc gtgcgtacat gtgtggttgt ccttcatgcc cgttattctg
      781 ccttcttgcc cgtggatcag agggtttatc gcagtgtgta gggtgtgtgg attaatggaa
      841 gatgcagctc attttaatgt acttagaaaa attcatcaaa gttcattgga gaataagtca
      901 tgcatgctga cttgttcatt ccagtggaaa tgaagaaatc cccataaaaa tagaagttta
      961 atgaagtgtt caggcaaagc cctgcctgtc attccaatta ccagtgatt
//
LOCUS       KCLA01002864             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46649upu ultra-conserved element locus uce-7554,
            sequence.
ACCESSION   KCLA01002864
VERSION     KCLA01002864.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46649upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-7554"
BASE COUNT          199 a          152 c          160 g          225 t
ORIGIN      
        1 aaagataaag gggttgtggt ttatttctct tagttgtgta ttagtttggc ctcctgcact
       61 taaaacaatt gggagtgact tccttgcatt ccccattaag agatcttgcc tgatagctat
      121 gagtttgttg ttcccataat tactgggaag taaacttgag cctttgtctt ctggcaacag
      181 cagcccttcc ccaaatagtg agaagagccc tgatcctgag gttcatctga gcacaaacct
      241 gtttcccttt tgaattctgt gtggtttcaa aatgtaatta cactcattgt aaagaaagaa
      301 agtcaaatga aatctgctgt gctctccttt ttcagcaagt gggatcccag cgtttcagtg
      361 tcaacatgcc tcacaagttc agcattcaca attacaaagt gcccaccttc tgtgaccact
      421 gtggttcgtt gctctggggt cttttgagac aaggtttaca atgcaaaggt atggattact
      481 acctgagagc tttgctttcc tgttgtgact cgtgcgctcc tcagctgaac agaaagttgc
      541 acgtaccaac atgcagtctg acaatattta ataagtgtct gagataagac ataactattt
      601 gagaagctca gactgaaatt tttcacatca taaaaacgtg ctgagcagga atggaaagaa
      661 gaaatttttg ccatggtgaa gtgatggagc attctgacat tcaggccttc cccggctatt
      721 gcagctagtg agcagt
//
LOCUS       KCLA01002865             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46663upu ultra-conserved element locus uce-6855,
            sequence.
ACCESSION   KCLA01002865
VERSION     KCLA01002865.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46663upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-6855"
BASE COUNT          136 a           52 c           82 g          136 t
ORIGIN      
        1 tcttatttaa gtttccttgc tttgtctagt aaaggaagaa agaaaagttt caggttcaat
       61 gataattttt ccaaaaaatg tataggcatt tgcatggcac agcttttata taagtgcggt
      121 attacataac agatggaagt ttaatggagt aaaacatagt ttgtaacagg ttcattgttt
      181 catatgctct ggatcactaa attggcaggt agagatgaaa ggtgcattaa aatggacgtc
      241 ctgaaaatta tagaattctc tcaaaggaat agagtcttta attttgaatt atacagctaa
      301 ttttaatgaa tttgaagcca taatgcataa cctttctttc atgcaggaag gaactgtgag
      361 ttgtgcaagg atttctatta cagactagca ggtgaagatc tttcag
//
LOCUS       KCLA01002866             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46679upu ultra-conserved element locus uce-2383,
            sequence.
ACCESSION   KCLA01002866
VERSION     KCLA01002866.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46679upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2383"
BASE COUNT          197 a          123 c          113 g          207 t
ORIGIN      
        1 gtaaccctac ctaacaagaa cagtaggttc agcttcagat tgaccaatgt gtagtacagc
       61 tattattctg accaaataat tttcttacag caatacctgc tcctttcatt aatctacact
      121 tttgggtgca ctttctgctt ttcagcagtc atagtacaaa aggtgggtta cttaagaaac
      181 aattaggtgc gtatacaaaa caatttgcaa gcagtcttag tctttcagct tcctaagtga
      241 agtgcctttc aaggctgatt tataacactg tcgtcttcag aaggcaaaat aattaatagg
      301 agcatggact tctaatttca gtgacttcca gagaaagtgg atttcatttg atttatgatg
      361 gccggtgact ttgcatttta tcagttcatt cactcattat ttatgctgat gaccaatttc
      421 aatgggtcgc tatcatctaa ctcactacta atcaaagaga attagggttc actgcattat
      481 ttagaagcca ctaatttatc ttcagaacaa gtatcaagaa tagtttgggg ccttccacac
      541 taaaaagaag cacagctggc aaagtaacag cgttttctca gtattacaaa ttaatgtcat
      601 gggggcactt gcaagaacta ctacttttta ctgaagtttt
//
LOCUS       KCLA01002867             761 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46695upu ultra-conserved element locus uce-5120,
            sequence.
ACCESSION   KCLA01002867
VERSION     KCLA01002867.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 761)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..761
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46695upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>761
                     /note="ultra-conserved element locus uce-5120"
BASE COUNT          206 a          158 c          183 g          214 t
ORIGIN      
        1 tctgccggtg tctccgatga ggttttggcc tcggttggga tttcactacg gtacttttcg
       61 tttggcttca tgctgaaaaa aacccaaagg gatttcttgt tttctctgcc cgcttttggt
      121 gataatccgt tgttgagcta gggggaataa ccgttcagcc tggctgaaaa aaaagcatcc
      181 gttgaaaagt ctcaaagaaa tctaccacgt gaggaaaaaa aactgggaga agatcggaat
      241 ataatttttt ctatgataaa actggtgccc ctcttcagga gaactggtct caatttatta
      301 ttatgcaacc acaaggatct cttctttctc agggtgtata agctgctgga ttgcttttcg
      361 cccaaatcaa tgtggtttct ttggaacatt ttcagcaaag gatcgcatat gctgcagtgt
      421 ctttgtggca agagtcttaa gaaaaacaag aaccaaactg gtaagcaatc cattacaccg
      481 cgttgttctg cgtttatgct accctgtctg ttgctcgtcg aggtagatct gcagtcctgc
      541 tgaggggaga agggggaaac gtaaggaggc cagcacggac atgcatgtgc atacatgtat
      601 gaataagcaa ggagcggtct ggattagctt tacccactgg caccaaggaa aaggaaaaaa
      661 aatctaaggc gatactagcc cagcctgcat ctcctagttt ctaggtgcta tttccaagga
      721 tgaaactttt atatcgctac ccttttcgag gggaagcccg t
//
LOCUS       KCLA01002868             782 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46711upu ultra-conserved element locus uce-7997,
            sequence.
ACCESSION   KCLA01002868
VERSION     KCLA01002868.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 782)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..782
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46711upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>782
                     /note="ultra-conserved element locus uce-7997"
BASE COUNT          228 a          199 c          156 g          199 t
ORIGIN      
        1 ggtcactgtt gaaaaccatc cagttcaaga aaccaccttc catgtaaccc ctcaacaaca
       61 gaatgcatta catcatcatc acggaaatag ctctcaccac caccaccatc accaccacca
      121 ccaccatcat catggacagc aagccttggg tagccggacc aggccgagag tctacaattc
      181 tccaacaaac agctcctcca cccaggattc tatggaggtg ggccacagtc accactccat
      241 gacatccctg tcttcctcaa ctacttcttc ctctacatct tcctcctcta ctggtaacca
      301 aggcaatcag gcctaccaga accgcccagt ggctgctaat accttggact ttggacaaaa
      361 tggagctatg gacatgaatt taacagtcta ctctaatccg cgccaagaaa ctggcatagc
      421 tggacatcca acataccagt tttctgctaa tacaggtcct gctcattaca tgactgaagg
      481 acaccttgca atgaggcaag gaattgatag agaagagtct cccatgacag gagtttgtgt
      541 tcagcaaagt cctgtggcta gctcgtgact aaactgaaac taagtttgtt tcttgtgtgt
      601 ttttatagaa gtggtgtttt tccaaaaaca aagtgcaaag ctgcttgaat cagaaggaga
      661 taaactcact gaaccgctac aggagggcaa agctgactat ttttttaaac ttgaaaagat
      721 tgcaaaggga caatgaagtt ttttgttggt tttggggggt tttttttggt tgcaagagcc
      781 at
//
LOCUS       KCLA01002869             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46727upu ultra-conserved element locus uce-1102,
            sequence.
ACCESSION   KCLA01002869
VERSION     KCLA01002869.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46727upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-1102"
BASE COUNT          286 a          198 c          173 g          245 t
ORIGIN      
        1 gatccgatag aaaaaagaca tttcaagtga tcctgattta aggcacagag actgccttct
       61 gcgcaaagct agcttaataa cagggactgg aagtccactg aaatgcatct gtagttaatg
      121 aaagctctct attaacagtg aaggaagaat ttaactcaaa gcttttctga aggacttctc
      181 aacttcccgc tccacttata gcaaactgtt gtgatacatt gtgacttcac acagtgggta
      241 ttaagtgagt taattcaaag gagctgaaac ctcattgatc ctaactgaaa gcaatacacc
      301 caaccaaata gttttctacc ccatctgctc tggcctgcca ccagctattc aatacaagag
      361 aattaatagt ttcagatatt ctaactgacc caataaaagc actcatttaa gcaggactgc
      421 attaacaaag tgaaaaacca agggcaaaat gggttcaaat ggagcatttt acttctagtt
      481 ggctttaaca aagctgaata atgcttattc tgacttttta tgtgcaagac ttgataaact
      541 gaatgagaag gcactcaatg atcagtcaac gagcattgat gaatggtcat taggacccct
      601 ccaatctcag ggaagaccat tccacaaagt ggcacaccag cttgaaaggg cggactcact
      661 aatgtccaga tttccccgct tgcttgttcc actttcactt tcagaccgct ggtcaccaaa
      721 tgaggctgac atattggaaa ataatctttt atgggcgagt ggtaaataaa aatggaggca
      781 ttagctgggc tttcaaattc aaatctgcta gttttgtcag cccccaaacg ttttgatttt
      841 ccacccagct ggaagctatt agtgttttct taaggcatcc cactgacagg gcaaacccac
      901 ct
//
LOCUS       KCLA01002870            1067 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46742upu ultra-conserved element locus uce-5557,
            sequence.
ACCESSION   KCLA01002870
VERSION     KCLA01002870.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1067)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1067
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46742upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1067
                     /note="ultra-conserved element locus uce-5557"
BASE COUNT          286 a          261 c          237 g          283 t
ORIGIN      
        1 aataaactag agagtattct cccttagctg atcaacgtgc atgccaattc tgaccagaga
       61 catgcagcac tacgacttct cttaatgtca ttaactctac tggggtccag acatcatgga
      121 tataggggtg cacctctaaa ccacggagtt ctctaaaaag aacccattgc ttacttctcc
      181 ttgctgtttc tttaaccaaa aatgacagtt aggggcaaat ttgatggcag agtgacatcc
      241 cagcttctcc cgcggtctga ccgatgaagc caccagtcgc cgtccctaaa agcaacccca
      301 cgtaagaaaa cactaatccc ccgcggggca aggagctatc tcagaagaag ttaaatttcc
      361 gttccctcat ttagcctctt tatttcacgg ctcaaactgg cacaagaggc tcgggagagt
      421 cacgagagga gtttaattta tcggcggctc ttgccctact gtacagtcac cgctgctatt
      481 gcagtgtaat ggatggaaca gatgtttgac accgcagcac ctcttcataa cttcactctt
      541 cacaaacagt tttacaagtg ctcgctcgcg ttggttccca ttcagcacag gaaactgagg
      601 tcatggtgaa acatgaggcc cgggcaggag cttgaactca tgtgcactgc agctggctcc
      661 gcgtcttcgg agcacgttag caattcatgg ggcagccata atttccaacg gatggacaaa
      721 gaaataaaag tgttgacacc cttattgtaa catctgcgcg aggaaaaata tgaggccgtc
      781 gctaaatgga gggaggacgg aggtttctcg ggcgttcatt ccgtccggta tcggaggtga
      841 ttatttttaa tgagaaaagg ttcagatcga cactggaaat ctcgcctctg gaccgtaatt
      901 ttcttcctat tgctcagaag caataattta cagagcgact tttctgatct cctgagctgg
      961 tttgttcttt cccagctgat tattttaaca cacgtctgaa tatggcaaaa ctcttcccga
     1021 gaatccaaca caggtaattt tgcagcttgt tctcatacga tgaattt
//
LOCUS       KCLA01002871             406 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46757upu ultra-conserved element locus uce-4452,
            sequence.
ACCESSION   KCLA01002871
VERSION     KCLA01002871.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 406)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..406
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>406
                     /note="ultra-conserved element locus uce-4452"
BASE COUNT          128 a           75 c           82 g          121 t
ORIGIN      
        1 tttccggata ctctagcacg ttttgctcgg tgaccaaagt tttcagtagc tgaagtggag
       61 gcacccttta ataagtaaga attagttcct tggtaactta taagaagtac taattagatt
      121 cttagacaat taaaaccaaa gaaaagttac ctccatactg ctctttgtag ggcaagctgt
      181 tcttttaggt agaagagttt ttctgcgaag ttggtatgga ctattctgtg caccaggacc
      241 tgattcttct gcaaccatat ctgcaggcac atcatcatct gtcaagaaaa cagaaaattg
      301 ctaattacag tggcagttgt tttacaccaa aaaatgtgac atacattttg caataaatac
      361 acccagttag gagaatgggg agaagtgtta cagcacagcg aacttt
//
LOCUS       KCLA01002872             745 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46773upu ultra-conserved element locus uce-2577,
            sequence.
ACCESSION   KCLA01002872
VERSION     KCLA01002872.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 745)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..745
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>745
                     /note="ultra-conserved element locus uce-2577"
BASE COUNT          200 a          172 c          141 g          232 t
ORIGIN      
        1 ctttttcttt tcctcagcaa gagtaaaact tgagcttgac caggtgtttt cacttcagag
       61 gctccaatgg caacaactcc agtgcttgga agctaacaaa tttgttgtgt cacaattgat
      121 aatcaactct agtaaaagaa tgtccaaatc aattgagctt tagcaagggc aaactgactg
      181 gacacagcca ggctcccagc aaaagtaggc caagcttgat aaatttgccc ttattatagc
      241 tattgatgtt taaatttctt cagggatgtt gttacatggg tgcctagtgg tgacagaggt
      301 acgatgacct ccttcgatcc ttaatctaca cctgttagtt ggctccctag ttgcttgtga
      361 gtatactcaa gcttaaaggt taacaaaaga aaaacaggcc aagtttacgc gactgcagca
      421 acggatcaat gcagagtaaa taaccttctc tgtcttattt ccccaagcat tattgatccg
      481 agttctttgt tctttgtcat gtttctgtct tctaatccca ggggacacta aacgatcggc
      541 tcatattgga catgttaact ggcacattat gacagctacc attttgtcac tcaatgcggt
      601 gctatatata aagaactcgc agttcagggg tttctgagct gctctctctg aaacaagcct
      661 ccaatacctg ctttttcctt ccagcttcct ttgttcactc acccctgccc cttaggtatt
      721 ttatctagat gtctgaaata ccact
//
LOCUS       KCLA01002873             984 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46788upu ultra-conserved element locus uce-4195,
            sequence.
ACCESSION   KCLA01002873
VERSION     KCLA01002873.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46788upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>984
                     /note="ultra-conserved element locus uce-4195"
BASE COUNT          277 a          170 c          180 g          357 t
ORIGIN      
        1 atgatgttaa ctagtttgag aacattttta tattttaatc aacacatttt atttgccatt
       61 aaacagcttc ttaaaattct ttgtgggaca ttatcctttc ctattacact atgaatgtag
      121 ctgtggtgga ttctccatct taattaatag gaaggcttgc ttgggaaacc caaagggtta
      181 ccatataaat ttatcctttg gcccagcgga caatttccat cgttttcagc attaggctgt
      241 ggaacatgta tagagttgtt atacctctgt aattcgttct gctgccaact tcattccctt
      301 ttctctgcct gcattttaat tgaaacaaca tttgtatttt tgagccagga tctgtcagaa
      361 gtccctgtgg ctagtctgtg gtacaagtag cagcagacat ggcttaccca tatggtgtgg
      421 tgcttcttgt aaaatccata tggccttgtt gaagggagtc ccagcaggga tgtgaagggt
      481 gttaataccc ttcaggccag gtctttccct cctggggctt ctatggcatt gtctttgcaa
      541 tctgctaaag cacaaactta attccttttt aataatcaat tatttcagtc caagaacgtg
      601 tgctctattt ttttaaatca tatattcctt gggcttgtta tatgttatga gctttttttg
      661 ggtaatttta taaaagaagt tgtttgctag tgactgccct aaatagagcc ttttcaaaaa
      721 tcataatttt atttaattta tttattttca caggaggtgc tgaacagcgt tccaaagttc
      781 tgctttcctt ttgatgttga aaggtatgtg gcatactatt gtgcatttta aaatgtttca
      841 tagataatta tatttaacat aattgcaggg aaagatttaa ggaaaaagaa agaacatttc
      901 acttcctaaa cttgcacctg cagatgagca catcctttgt tgtttaagta ggtaaaaaat
      961 ccctagttga aaataataaa aaaa
//
LOCUS       KCLA01002874             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46804upu ultra-conserved element locus uce-1036,
            sequence.
ACCESSION   KCLA01002874
VERSION     KCLA01002874.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46804upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-1036"
BASE COUNT          231 a          154 c          141 g          242 t
ORIGIN      
        1 tgataggcat tgtagacatg agtatgtgaa tgcagtcaca gacacataca cacagagtac
       61 tgaataggct gtttgatatt taatttgaat gcaactgttt agatatttgc ttggcctaga
      121 tttttcattt aaaatgtgtg gttaagagca gccaacatga tttgcatgtg tgtgtctgat
      181 ttgttcactg ctatgcctcc tgtgtcctac atcttaatca catccaggca cccgccccat
      241 tacattacca gaagggaagt gatggacatc ccttgactct cttcatgacc ccctgataat
      301 cctgtttcac acacaggctc cctgctgtat gaaacacaaa agctgccact gtagttcttt
      361 acttccagtc gatattctga cagacttgat ctagcaaatt agtatgctgt ggtaggggca
      421 cgacaaaaga cccttttgac acactctgaa tcgatacaaa ggccaacaga gagccatttc
      481 actgtagttc tgttattttt ccccttttca tgacccttct tctttttttt tttagcttgt
      541 atgaccttgt cagatttaaa aacataatgc tagaaaagtc atcctttcac agaagaaaaa
      601 tctaaacgta cagaaatgta agagtatcaa agtaaaatta aaatacagct gaattagagg
      661 agtagagatt tttctgtatg aatttgtcct tcacaatgct gaaatcacta caagtttcaa
      721 atatcagaga gtagaattaa atagactgtt ctggccatga atgctgtg
//
LOCUS       KCLA01002875             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46820upu ultra-conserved element locus uce-5847,
            sequence.
ACCESSION   KCLA01002875
VERSION     KCLA01002875.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46820upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-5847"
BASE COUNT          170 a          125 c          119 g          181 t
ORIGIN      
        1 aaaggactcg atcccaaacg ggcggctaga cgcaagcgga agcgtcacgg attgggtact
       61 cgctctctat agtaggtaaa taaacgtaga aagacttggc acttttaaaa ggtaacttta
      121 ccaaagaaca aagagccggt aaccaataat tcagccttgt ctcagcatga catcttctgt
      181 actctttctt tttgccggac cagttggcgg ttaggagaat gtgccttttt tgtacatttg
      241 catttaggtt ttataatttt aaccgacgta tggacacaaa agcatgaagg aagacttgga
      301 tccaagcagt gccacacttt acatcatcac tacaagtgtt aagtgtaaag aaaaccagtt
      361 ttgaaactat gaaattcctg attcataaag acacagttat ttgtacgtca cgtattggag
      421 aattcactgc tactaaagct ctttattacg atcgcctccg ttttgaatcg aacgctaaat
      481 taagttgtct tccaaaactg tgtacttctc tggtcagctg tatgtgatca gttatctacc
      541 tcaaagttta tttccttttg tatcgggaca ggttgctggc cctccctgtt tccac
//
LOCUS       KCLA01002876             962 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46835upu ultra-conserved element locus uce-6472,
            sequence.
ACCESSION   KCLA01002876
VERSION     KCLA01002876.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 962)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 962)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..962
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46835upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>962
                     /note="ultra-conserved element locus uce-6472"
BASE COUNT          307 a          162 c          183 g          310 t
ORIGIN      
        1 atatttttca aagagcagca aggaagatga tggattaaag cagatgcaga ctgtttgcgg
       61 ttatataaga ctattaggta ccctgcttgt tctggctttt gtaatttgtc catgtcctac
      121 tttatataac tcaatccatt gtgagcaaaa acatgaaata ccagaattgt tcatatttca
      181 ttttgtcagc aaattaggaa aaaatacaaa agcaaacaca atagagatca tatttgttga
      241 gtatggaact acgtagtttt tcttatcaaa ggagtctgaa aagaacagaa ggttaagaag
      301 attttttttt tacaatgaac agatgtgctt gttactgttg atggacaagc ttatccattt
      361 acatcaatta atatcaacag caagcacatc aatatggaag cttgtcctga cgccttgatt
      421 ttttcccatc tgacaggtaa tagtagggct gggaaaatgt caccacaatt tagtcatgcc
      481 tcactggctt taactagttc agtgacaatg ggaatgcatc atgctaagat tccttatgat
      541 tcataatggt actgcattag tgtgctattg cggaggattt aaactagtct ttgtcaatta
      601 agggtttaag gtcaaatcct ctttatggtt tttccattcg tgcattaagt aaaagcaagt
      661 taaaatattt atgaatgcca ctaaaatgtg gaaagtttct ttaggaacct gtcttttcgt
      721 attgagtcat aactgaaaac aactatgttt gacaaagaaa ggctatttca tcacatggca
      781 cagcttatcc ctccccttct ctaaaggcca cagctacaat ctactcagat ttggcaggaa
      841 aactacttct gtggacataa tgattttaga ctgtgggatg aagttacgcc tcagtacagt
      901 taacagtgct taagatagga gtataatatt tgtaaaccaa attaggacct tggttgctcg
      961 gc
//
LOCUS       KCLA01002877             281 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46850upu ultra-conserved element locus uce-6032,
            sequence.
ACCESSION   KCLA01002877
VERSION     KCLA01002877.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 281)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..281
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46850upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>281
                     /note="ultra-conserved element locus uce-6032"
BASE COUNT           87 a           58 c           51 g           85 t
ORIGIN      
        1 ccccccacct ttaacttctc tgcagctctc taaatagccc agaagagata aatcaaagcc
       61 tgaactgtaa ccttactctt atatacttgt taaatgactt ttttacagtc tgttattgct
      121 aggaattgga ttgcttttaa actaatgttg tctggcgggc aaaagtgagt gaaaccgcaa
      181 agcctggagg aacactaatt acttgtttta attagcagca actttcactg gagtataatc
      241 tccctacagg ccacttttca gtaggtgtgg aaaaaaagaa a
//
LOCUS       KCLA01002878             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46865upu ultra-conserved element locus uce-6692,
            sequence.
ACCESSION   KCLA01002878
VERSION     KCLA01002878.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46865upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-6692"
BASE COUNT          288 a          167 c          199 g          339 t
ORIGIN      
        1 gcaaaatgca gaaaatcaaa ttcttttttt ccaaggtcat ctgttaaggg aggagcaaag
       61 acaaacttca ttactcccaa gaagtagcaa aatgaaatgt ttttttaaag tcacaatgtt
      121 ggcttctctt gtgtaaaatg tgtcatgaag acatccttac tagcagtaga ttgtgtccaa
      181 cgtttttcca tttttaatag cagaatgtaa ccactgctta atccactctc tttctttata
      241 aagaaactgt ttaaaccaca agagtagatt aagtataggg aaaaaacccc tgtagtttta
      301 gatcattggc aagggtgtgg catgttctgt gtgttccctc tctatttatc attgaaaata
      361 gagaggactt cacagcacta gtgtatgttt caggtttgca cacattcgtg agaatgttaa
      421 tactgcgttg tgggaattgt gctgagttcc ctgttatcat gcaagcaatt gctaactgta
      481 gacctctgac tttgtaattt gttctttatg gactagcctg cagccaataa gcaaaatcaa
      541 tagtctttgc tgaaaagtaa gcaagtgcca gtgtgttatg tgacaggtga agatacatgt
      601 gcttaccagg ggtcaggggg ccacatcaaa tttctctctg acttcttttc aaaaagctaa
      661 atccatttag ggagcattcg tcattggaaa atgttgcagt ggggaattag acaggctcct
      721 gctcttcttt tctcatttaa cgatgtttgt tttcaacagt ctgttcaata atgtcactga
      781 gaagaaatta tgtgagaaga ataaagtgct tatagtctat ttatttattc attcatttct
      841 gtagaataac actagctgtt gcattctcat gtttattaat gttattgtgg cagtccaaat
      901 atttgtttgt tcttcttttt ctttggaaaa acggtgggac aaagcagtgt ggaacatttt
      961 acttgctgtt taagcctaag gtgaaggtta cac
//
LOCUS       KCLA01002879             821 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46881upu ultra-conserved element locus uce-3987,
            sequence.
ACCESSION   KCLA01002879
VERSION     KCLA01002879.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 821)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..821
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46881upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>821
                     /note="ultra-conserved element locus uce-3987"
BASE COUNT          233 a          209 c          165 g          214 t
ORIGIN      
        1 attactcatg tagaggctat gacaaagaac atttctccag acttttcatg ggggcttcac
       61 tttcaggaag taactctaat tactgttcaa gtctcagcag cctgcatgcc gctgacagtt
      121 ccaagaaaaa atgaacctat ttgccctttt cttggtctga aacgccaaaa gagaaaagct
      181 caactagagt tattaaaaag aaagaaaata agcgccaggt tgttgcgttt gcttcccagg
      241 cagaatcctt tttagaaatt cggtttttca gcttttgcaa accagcaaat tctgcgtcta
      301 cgctaattcg ctctccgttg gctgcagtga aactgtacat cttgactttt tacagctttt
      361 ccatactggg gcccacttcc tgcccagttg aagaaaaaaa tctggcctga agatgaaata
      421 actgcttaac attacactaa aacatctggt accattttat acacagaccc atgtctgaga
      481 gcaggcaatt ctagcggtct caccagcggc acagtgcata cccaaacctc cccagggtga
      541 catcatccca tatatggact ctcaggccca gccctccccc ttttcctggt cctaaattca
      601 ttgccagatc cccagtctgc tgcaaatgtg ccacgtcaag actggaaatc acagcacttc
      661 agtgtgtttc agtgagtgct gcagaatgtg agggagagcc gagcacaacc cgtgatgcag
      721 gaaggcagtt tttccccaag actaaaagag gatttaaaat aaataaatag acgcgtccgg
      781 agatcctgct ccgtcgcccc agtgttcaga ctacctgttc a
//
LOCUS       KCLA01002880            1063 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46896upu ultra-conserved element locus uce-4435,
            sequence.
ACCESSION   KCLA01002880
VERSION     KCLA01002880.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1063)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1063)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1063
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46896upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1063
                     /note="ultra-conserved element locus uce-4435"
BASE COUNT          307 a          173 c          211 g          372 t
ORIGIN      
        1 tttatgtata aaaattgatt ttttggcaac ctgcatttta gggttttttt gctaaattat
       61 aggtacacta aggcagcgtt ttgatagtcg aagcaaatta ctctgtaatt tttaaaagtt
      121 acacttttaa aaggtttgta ttgcaaacat tctaatataa attaaagcct agatgtcttg
      181 gtttttaagt gaaaaattta agaaacagtc atcattttta tggagatcaa tcgttttcct
      241 atgtggtctg ccttagctat tttgtcttgc tgaaatggaa cagtatacaa agaatacggt
      301 tcagcccgta gagcaaagtg gtaacgccac aacctataca tcatacccta cagcttttat
      361 caccgggtta tcagagtgag gtgtcacctg ttctgtgatt tctaaccacc cttccatatt
      421 ctgttttaat gtaaacctct taagcgtttc ttgcagccag ttacactgtg tgttctcatc
      481 aaggctactg ttataaatgg tgtgcatgca tatttatgtg aatgagtcaa agacatttgt
      541 aagtcatatc cttgcattct aaatgaatcc tgcataaaca gtacaacgtt ttataactgc
      601 tgatgacact cgagtgagtg aaagtggtgt tagttcttta ttggtttaaa caggtatggt
      661 ttaggagtga aaattaaagt tttatatcac tgtaatgtag ctcccaatat gtcgagatgc
      721 agatgtgaga tttctatctc cataaattgg attcgtggta caaggaaggt cattggaagc
      781 tttgtgctgt tccaaagtga caagcagcaa aacttcactg gcacgttaag tgtgttcctt
      841 tggttcaaac tttgtggtat gaaatcatca tggctcttcc tttctaatta aacagtacta
      901 gatttatgct tgttacaaat aaatacagta gtatctcgct cttgagggaa atcttggcaa
      961 ggcttacgtt tgacatggtt aaataaagca ccaaaacttc ataagcttgg gagattgggc
     1021 tgtgttttgc agttcggtgt tggttcttga actgtattgc taa
//
LOCUS       KCLA01002881             720 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46911upu ultra-conserved element locus uce-460,
            sequence.
ACCESSION   KCLA01002881
VERSION     KCLA01002881.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 720)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..720
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46911upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>720
                     /note="ultra-conserved element locus uce-460"
BASE COUNT          229 a          140 c          120 g          231 t
ORIGIN      
        1 ttttcatcag tatctttaat cagctttcaa gacactataa aaacacaaca gaaacgataa
       61 aaattccttt tgtctcaggc tcagaccatc gcagggaagg atggatccct cactgcatcc
      121 ccaggaaaaa ttaacgaagc aaattaaaag acaacccctt tcaagctgtt ccaaagaaac
      181 tcatttcaca gccttttatc atccttcctc gccgtttggg aaatttattt aagttattaa
      241 aaaattccct aaaattctca gctgaaaagt tggcttctgt tgttgctcca aagctaactc
      301 acctgatttg tcagaacagc tcgaaaatga agtgctaact ggtgggtttt attgaaagga
      361 aaccaagtgg aacaacatat gtattttctt aggaaactaa aaagctcaca gtcctgcggt
      421 gttccttggg gtaaattctt tgttatgaat tacaacctgc ttactgatga gttgttaata
      481 aaaagtagac ctgctgggcc attatttttt tccacacagt atacccagtt tagctttttt
      541 ttaatgtttt cattaatgca ctgagtgtga ataaatctgt ttccaatttg taattgtttt
      601 cccttcatct ggacattaat ttattgccaa atctaacact cttctatttt taatatccct
      661 ccacactgaa gagctgtttt aaaaagaaag aaaatagaag aatgcgggat agtgggaagg
//
LOCUS       KCLA01002882             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46926upu ultra-conserved element locus uce-3099,
            sequence.
ACCESSION   KCLA01002882
VERSION     KCLA01002882.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46926upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-3099"
BASE COUNT          190 a          194 c          247 g          232 t
ORIGIN      
        1 gattgagaca gtgagactgg atgatcccag cacaggatga agatggtgcc tgtgttgtat
       61 cccttccgag ggtaggtaga gtttcacccc taatatttgg aatttttaag ggtcattgaa
      121 attgaaggaa acaaagttgt cttttataac tgggctgagc cttagcaaat gccccagctc
      181 tcctaagcaa ggctgagctc ttgctggtct gtgcccagag ccagaggctg caggaggctg
      241 gtgtcagcaa ggtgtctcag tgtgtcgcct gtcaatccct gtattcccat gttcacctca
      301 gaagagaggt gaggagaagg agagagccac tttgaccttg ccttccagtc tccgttgcag
      361 ttactggttg gttttttatt ctctttgcac gtgcctctaa ttgatcttga aaagaaaaag
      421 aagatgttaa gtgaaatgaa gccgtaagtg tgactggaga cttttatgaa gtgtggccaa
      481 gttccctggg ctgcgtagaa attgtttatt gattttggta tggctgagtg ctccggagta
      541 atcgcccaca gaaccgctaa agagagcaga gtgcttcagc aggtctctgc tgcctcctgc
      601 ccctgcctgc tcttcctcct gcctggactc gggagcacct gcagcttagg agccatggct
      661 gtttaactgt tggtgtgtcc agctctggca gtcagagtct gtgctttgcc ctgctgctcc
      721 agaaatgtac ggtgaaagag taggagaggg ctgggagggc tttggagcat ctacaagcaa
      781 gcgagcatgg tgctgctgag ccctgcccct tggctctcct acctgttggc tggcacagac
      841 agagatgtca gcaaggttcg tgg
//
LOCUS       KCLA01002883             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46942upu ultra-conserved element locus uce-3573,
            sequence.
ACCESSION   KCLA01002883
VERSION     KCLA01002883.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46942upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-3573"
BASE COUNT          276 a          139 c          133 g          255 t
ORIGIN      
        1 ccttctgtcc cccacaccca aaaacaatct gaataatgaa tcaaacggtc tccagagtaa
       61 ttggatcttt ttctgtgtaa ttagcaattt ttccccttgc attataattt aaagtactgt
      121 ggttgaattg aggagcccat gtaatgagtc attagactga ggcttttaag gaagttattt
      181 ctgaaggtct atgggagcta aaatatgtct aaattaaaag aatgacaggc tgcaatcaca
      241 gctgtaaaat aaaggtactc agtaagcagt cctattacca tcgaaaagaa aaggaagcag
      301 atctccagcc tgcgtatggg agcagaggaa atgatgaata ccttaggtaa ctcattctgt
      361 gcaaaatcaa tctttcactg tcaattttaa atgaactaat ttgttcacaa atttgctcag
      421 tcagtttgga agcatactca gttcatccat attagcaaat cctttaatct tgactagtcc
      481 actgagtaag aaatctagaa atgtgttaat atgactggac atatgtagta ggatgagaat
      541 tgattctttt aattagtgtc tattcaagtt atagttcctt cttttactga actattgacc
      601 cactgataca taaagagatc accgttatga ctaaaatgcc ttcaaaaatc atatttaact
      661 ctttctttat tggtcaatat cagatagaaa aaaatatatg aattatccca aaataaacac
      721 tgcaatctat tttaaggttt cttgcaggcg tgttcccatt agaactcaag attcaaactg
      781 atatctgaaa tttaaaaagc ata
//
LOCUS       KCLA01002884             912 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46958upu ultra-conserved element locus uce-6478,
            sequence.
ACCESSION   KCLA01002884
VERSION     KCLA01002884.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 912)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..912
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46958upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>912
                     /note="ultra-conserved element locus uce-6478"
BASE COUNT          224 a          229 c          193 g          266 t
ORIGIN      
        1 acagctcttt gttccctaga ccgtgtgaag aatggaagca gggggactca ctactatttt
       61 acttttagct ggtgaagatg tctcacattt cattagtgtt tgaatcctta actcctcata
      121 tttctcaggt tctttttccc tttgcacaat gtaggcaggc acaagaatgt gtaagtgcca
      181 cagctacccc attcagactt tcactgaatt ggtgtaattg gattttgcac ctcaatttgc
      241 aagatacagt tcccctgaaa actaacctgt tttggtgagc ataaaaataa aataaaataa
      301 taataataaa gacagggcaa gcattcataa ggtaccaggt ctccacagtc ttcagctaag
      361 agaccccaga tttcaatgta ccctgaaaag ggtgattaat ttaaagtgag tggagtctgt
      421 ttctttaaga caagctcata aatcgtgaaa gatcaccact tcttttcaaa aggctctcca
      481 cggtctgagt ttcccttctg ggtcagtaaa ggcattgaag ttttaatggc atgccatggc
      541 agattacacg atacagctgt cccggcaccg tgaaaattaa gttatgcccc gtgtcagtaa
      601 ggtttttttc ccttttcttt ccctaccctc ccccttcact ctctctcttt ctttctctct
      661 ccctgtcccc ttcttcattc tcctttctgc tgggaagtgc gcatccgagg aggaggaggg
      721 agcccggcgg gagctgctgc cacggctgct ggtgagcccc cgctattgag actgagtaaa
      781 tggagctgat gggtgaagaa gagccgtcaa aatggaggct tttgttcttc ctcatctccc
      841 cagggcccgg tggcagaggc agccctccct gctcactcac atgtaagcac ctcctttgcc
      901 ttcccagaca ct
//
LOCUS       KCLA01002885            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46974upu ultra-conserved element locus uce-2177,
            sequence.
ACCESSION   KCLA01002885
VERSION     KCLA01002885.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46974upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-2177"
BASE COUNT          363 a          230 c          165 g          277 t
ORIGIN      
        1 actggacata ttttagtcag ttcacagtat aataaatatt ttactaatct gctttggaag
       61 agcaaatgtc ttttagggtt tcaagctcct ctaaaagttt cttgttctga acttctagca
      121 ctgcaacacg actctccaga cattttatgt attctttctt ccgacgtcga cattctttag
      181 cagcttccct gcaaaaagca gaagtaaaaa gtgcaaacta aaaagccatt tgcatgccac
      241 tagaaagctc agcagaggat ggagaataca acacaattcc aagttttgca acatctccca
      301 aatcagtctg aaaacactta gcaaaactgg gttccacaag ggcctcaagt gcctctttct
      361 caagttcata tggcaatctg tagaattgct tcctctcatg ccctgattaa agttcataat
      421 aaacaaggtc cgaatgaaag acagttattc tgctttatga caataaagat ctttaagggc
      481 cttgagttcc tcaatgagag tcttgttttg gttttcaagc acagccacac gattttcaag
      541 acatttgaca tattctttct tctttctgcg acattctctg gcagcttccc tggaaccaat
      601 acaaggcaaa tgactacagg aacaaccaca acactgcaaa gactggataa atgaaattgc
      661 ctgcaatccc tgcagctcac aacaaccacc acaaccacaa tttggattgt acaaatagag
      721 cagcaggtaa tagccataag caataacact gttaaaatac aattgaaaat aactaaaact
      781 tgaaacaaat tcaccaacca caaatacaaa gatggaataa cacgcagagg gatcgaggaa
      841 aaaagacgag agcatactga ctcacgctgt actaaacagt agggccaaaa gcagcatttc
      901 ttcaactcac attccatttt ctgccattat cttttgcaat caaaatctta aaactgaaca
      961 aaaggaattt actttcagaa aatacaagcg taacactact ctcttcagat aaaaagctag
     1021 atgtcaggtt tacaa
//
LOCUS       KCLA01002886             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 46990upu ultra-conserved element locus uce-767,
            sequence.
ACCESSION   KCLA01002886
VERSION     KCLA01002886.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="46990upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-767"
BASE COUNT          249 a          159 c          148 g          202 t
ORIGIN      
        1 tgaggaagac cgtgtagatt taagctcata cacgtgtgtc acacagagag ctgcacatgt
       61 ataaaaccac tgtgtttgtg gtttagtgtc tgtcagcaca aaccccacaa agcagatgca
      121 ggaatagaga gtctgtacaa aattggggct ctcagagcct ttgaaaaaat gagtaaggct
      181 tcaaaaatga cccgtgagat gaatattaca atgtgtgtgt gtacacacac acacacaccc
      241 aaacgatgtc accctgctcg ctaaccccag ctgcataaat agtgctgtca agtataaaaa
      301 ctttcatccc ctcggctaca gatatgctgg gaagattatt attagtttgt attaatagat
      361 gcaggcctca aaagacgaaa taagctattg ataattgcaa gaagtataca gcagctactg
      421 tatcgatcgg cttgtcccct attcccctgg tataggagag ataagaagac acactcttta
      481 gtgcaatata atttcttttg acctatctgc ttgctacaga cttatgatga atagccggag
      541 tggttaaagt cctttatcac gaaagttacc ccttgatata atattgattc tttataacta
      601 gctccaaaca caaaaatcaa actgtccact tgaccatcat catcatcaat atcatcacaa
      661 aggctccgga ataaagagca gcagaggact gaaaacgctt tctataatct gcccacctaa
      721 tctttatttg ctgatgatga aaagcaaagg ggtgtgag
//
LOCUS       KCLA01002887             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47006upu ultra-conserved element locus uce-3512,
            sequence.
ACCESSION   KCLA01002887
VERSION     KCLA01002887.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47006upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-3512"
BASE COUNT          198 a          182 c          136 g          218 t
ORIGIN      
        1 ttttagtatg ggaaccgtag tctgtgcact accttagcgc tactcagagc tgtgaaagag
       61 ccctaatgct tccagcttag ctgtgtatac ctttaagtat gtctaattga aaaccacaaa
      121 gcattgtttg ctcctggaga accaggaccc cctttggatt taggaaagaa tgcaacaccg
      181 agataatctc acttttccca tcatcatcct ttcattcttc ttcactctcc ccctccccag
      241 acacaaggtg acatatccaa gtgcttgtcc ttcaacagat tcttcagcag gcaacagagc
      301 agaaagccct aatatctatt catttgtaat ctgtcattct taaagtatta aggacaattg
      361 acttcacatg tctcaggtaa ttagaatagt catcctttgc tccggatttt taaagcaagc
      421 atctcaaact cttaatcagt acatttagtg atgtctttca acatagctgt ttcttgtcaa
      481 acgtgtggta ggttggggga ataccttgca tacggaatgg tgccgaagaa ttctcttgaa
      541 aactgtttcc gatcgctttc gtaagcacag aaaatctcct ggtgaccagg tggtaccgcc
      601 ctccctccga gccacccttc tcccttttta acagggaaag ccgctccgag ctaattaata
      661 actagaaatg tcaggagtta gcgtggcacc aacgtttcag cgcttgcttt cccaagttta
      721 gatttccaca tcaa
//
LOCUS       KCLA01002888            1194 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47020upu ultra-conserved element locus uce-6614,
            sequence.
ACCESSION   KCLA01002888
VERSION     KCLA01002888.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1194)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1194)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1194
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47020upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1194
                     /note="ultra-conserved element locus uce-6614"
BASE COUNT          334 a          270 c          244 g          346 t
ORIGIN      
        1 aatggatcga cttaaatacc ctgggccaaa cgcttagctc tcatcaactg gcagagctcc
       61 actgaagtta atggagatgg accagcttac ccctcctgaa ttatctgggg cctgctttcc
      121 ccaagtcttc aaggaaaatt ggataattag atcagtggga cttgtttact cgtgactggg
      181 tttttcccct ttttcttttc ccctgctttc tctgcactat ttatgatctt gcagttgcct
      241 cctgtggagc tggcaggcat cctacgatgt gcaccaaatt ctgggaagga aaccaccata
      301 gctgtgtagt accgctgcga gagctgctct gttgaaccac ttttatttcc tcttttgttc
      361 aaattacaga aaaatctgag agacacaaga tacaacagga ggagacgaga accttcagtc
      421 ttccgcttct ctctttcctt cttgcgtcta atattgctct ccttgccttg ttctgatagc
      481 ggctatttga aatagttata tataatttaa cgttatacaa aagtattgtc atatcaaaca
      541 tagtgaaatg gattccaaaa acaccatctg gtatttggga atgcactgtg agttgggaac
      601 gtgagaagag atattctttg ccactttgct tgggacccag ccattagcag tgtaattgcc
      661 aagaaaaggt gacaggcttc aggcttaatg caagtggggt ttttttttcc ctcctctctc
      721 tttctcttcc ccagcctgtt aactctatga gtcctaaact caacgcaaaa ggcactgtaa
      781 gggcaatgca aaggcaaaaa ccagcaatag gctcccttaa attgaaaggc agggcagaaa
      841 attaaaacag tcgctgggct cctataagca gacggggata agcgaaagca aaataagcta
      901 gttgagagga ggaaagaaaa cgaggtatcc tttaaagctg cagcatgcca tgcagaattg
      961 ttctcctaag tagtggattt gtaatgatta gagtttccca agctttatcc aaaagctcat
     1021 ttcaaagcca tcattagttt cccttaatcc acccaaaatt gcaaattgca tattgtgaag
     1081 gtcagccacg accactccaa acctgcttta ctcgatgttc cctcacttct ctctccctgt
     1141 ctccatctat ctctttaagg atggggggga aaaaagagag gtttcaataa atta
//
LOCUS       KCLA01002889             337 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47035upu ultra-conserved element locus uce-7799,
            sequence.
ACCESSION   KCLA01002889
VERSION     KCLA01002889.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 337)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..337
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47035upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>337
                     /note="ultra-conserved element locus uce-7799"
BASE COUNT           73 a           79 c           99 g           86 t
ORIGIN      
        1 cagaggccta ttagatccat atgaaggcag atatgatgat gtgcagatgt gctctgcttc
       61 cctccgcggg acggggccaa ggactttaga tgtggtgttt cccatggtga cttgcattat
      121 gaatggctgt actgtacgaa cgctgctgct ccttatttat tgccctgtgc tgcatggaac
      181 gtatttattg agagcactaa aataaacgag cccagagcat gtgcgtaacg agagagctgc
      241 cttctctgtg tgctgccgtc ggggtgacct ggaagtccac acaaccactg cccaacctgt
      301 gtcgggaggg tctgtaaagg tcggctggag cggctgc
//
LOCUS       KCLA01002890             974 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47049upu ultra-conserved element locus uce-2592,
            sequence.
ACCESSION   KCLA01002890
VERSION     KCLA01002890.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..974
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47049upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>974
                     /note="ultra-conserved element locus uce-2592"
BASE COUNT          290 a          182 c          199 g          303 t
ORIGIN      
        1 ttattagtta gcaataataa tttccactca gtgaaatcta gttggtacgg cctgaaatta
       61 ctcttaattt attatgccat taacagtgag ttatttctat tggcttttga ttcaaagagg
      121 tgaataaaag tagtatttta atgagatgca tgggtattca aaacatgttg tttgcctgaa
      181 gccaataacg tattggttat agagttgata agcctaaact gcagcataag cttatcaaaa
      241 tggtgatgtt gtttgaactg actcgatcac tgctttttgt gttttggtcc cccaggtttc
      301 aaggtatcaa agacacatgg actttaaaac tcaggttttt aagaaactgc ttaaaataga
      361 agctggaaaa ttcagtccag ggtgtagttt ccttccatgc atttggcacc ttttccagat
      421 aagtacagga ttccattatc caaattgtta cacatgtgtg acagagcttg acctttagtc
      481 atgtcaatcc tttttgtgta ggcctcaggc tccagactaa tggttcaaag cctgatttac
      541 tcactgtaat aagggcagga ggttgagcaa ttgtcagctt gcctgctcat actagtctca
      601 gatcctggtt gaaagctgtt aacgcaaagc ttttcaaagt gaatttacaa ccaccaccac
      661 tgacagaggc caatcagtac accataaatg tcaggttagt gagattgagc agtaagtaaa
      721 gtactgtcag cccactattg gctaaaatca attgcttaag gtttaactgc gagtagcaat
      781 tcatgtataa ctatgtctgc agaactgact taagtgtgca gtgtaagtca gagagtgaat
      841 tgggtagaat tacccaccac caacagccat ggctccaagc cctgcatttt tctccttaca
      901 tgcaaatggt acttgccatg gtgtgattca tggtcaagaa gttcttgaac ttgccatgta
      961 cctatgaaaa gaag
//
LOCUS       KCLA01002891             556 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47065upu ultra-conserved element locus uce-4061,
            sequence.
ACCESSION   KCLA01002891
VERSION     KCLA01002891.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 556)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..556
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47065upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>556
                     /note="ultra-conserved element locus uce-4061"
BASE COUNT          142 a          123 c          106 g          185 t
ORIGIN      
        1 tataaaaaca tttatataaa aaaataacag tatgaaaccc caaccacccc cttctcagtc
       61 cctgcgctgg tagccgcgta agtcccagca ttttacgagg tgttctattt tctcagcctt
      121 attgttaatt taacccccag taatcttatt tgctctctag ctctctacag ccacagaaga
      181 ttattttttt taaaaccagc tgttgaaaat aacccagttt aaagagttca cagttgaatg
      241 taagggattc atcattatat atttactgtc tgaggctgat atagctgtaa ggtttttcag
      301 atgccattga tctattgcgc atgttccctc cccgggttgc agaacgtgct tctatttgca
      361 taaggccctg ggcaaggttc tttcttgcat tgattggcct gtccaaggga gcctgatgtg
      421 ctcctgcatt gatcaccctg tcttttcttg gaaggcagtg ttacgccgag ttcatctcaa
      481 acattctagg gagaagggaa aactttactg cagatgtctc aattttattc agatgttcct
      541 ttgagtatag gccttt
//
LOCUS       KCLA01002892             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47095upu ultra-conserved element locus uce-3852,
            sequence.
ACCESSION   KCLA01002892
VERSION     KCLA01002892.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-3852"
BASE COUNT          254 a          145 c          158 g          178 t
ORIGIN      
        1 aatctttcaa tacctacttg tcgagaataa tagttaagaa tatagtagtg ggatttaagc
       61 tgtttaaaaa gacaaaaata atgctgaaat gaaataaaaa caagaacaaa actttaaata
      121 ccaaaaagtc aaaatgtttc agaatccgaa tcattttcat tgtacccatc ctctgttcct
      181 atgttattac tcaagggctt attgtaagag ttaatgctac ccatactgga gccatcgcag
      241 agatgcgtcc cgcccaaatt gtctttttta aaacaaacga agttgaaagt cgtcattgta
      301 ctggaaggag aaaaaggcat catggtagcc aaaatgagtg ccaggcagtc agccacgtct
      361 ttgttaggag cgcaagccag ggctggcgta tgacctgggc acaaacgcag acaaggcaat
      421 ggttagtact aagggcactg agaacagcac tgagcattcc tcatatacat ctctagggga
      481 catcgtaagc aggagatgta tgttccatta cagtcatgcc aggcaacacg ggtaggttac
      541 ttattttaaa tcagtcatgc cgggagagta cacgcatcta aatcactgtg gccacaacaa
      601 gcactatttg tttaaaatca ggcagcaaac agacttcaca atatgaataa aagctcttgc
      661 taaacacagt cctagagcac aggcagtgtg atggatacag aacatggagt atggcaacag
      721 ggacagaaac tggct
//
LOCUS       KCLA01002893            1002 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47111upu ultra-conserved element locus uce-2035,
            sequence.
ACCESSION   KCLA01002893
VERSION     KCLA01002893.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1002)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1002
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1002
                     /note="ultra-conserved element locus uce-2035"
BASE COUNT          287 a          271 c          190 g          254 t
ORIGIN      
        1 agctctcaca gaatgagcag caagcccatc ctggcatcag gattgctagg tagtaagtgt
       61 ccctaggggg gttgcaaatc ccaagcatgc tggtactagc cactggcaaa agagatgtca
      121 gatccccagg aagctgctga gcacctccaa gggaagatta tctaagactc atcttaaagg
      181 ctccacaacc ctgcatgcaa cacagacaca cacagactcc tccaccagag aatgattcac
      241 accatctttc ccggtcaaga acagtttaaa aggcaatttc cagactttaa gctgttttta
      301 agtaccaaag gctggaaatc aacatcaaga aagcttgtcg gaaacccagc atcaccagaa
      361 tgtggaaagc aggaagaaaa taaaaccatt ccaacccaac tttcccctcc ccagcctcct
      421 actaccccac aaatgaaaaa ggaagagagg agagtggtca ggtcatatca acatcaccca
      481 tcatgggcag tcaccatgtt ttctttcagc tgcttaccag tgtggctcct cttatgaacc
      541 attagcacat tgggcccaat gcaaaccatg ccacagacgt cacatttcag tttaccattc
      601 ggaagtcgga ttcctccctc gctcgatagc tcctggatct ttctgttatc cgccatctcg
      661 ttactgtcag tgaggggctc ttccaggctg cttccttcat catgagccct gatctcatcc
      721 tcctgcctca ggggcttcct gtcacattcc tcatcacttt gcatttctag ctttactgaa
      781 tttgctgaaa taaaacaaaa aaaaaaaaat ttaagaactt agattttcta ggttcccaat
      841 cactagtatc atgataaact cctgttatca atactgaagc ccatccttga agctcaaacc
      901 aaaccgagga gctcgtggtg gtgatggcac gacgagtttc aactgcagtt tccttaaagg
      961 ccttgtttga ttcctaattt ctgtccctgt cttacagctt ag
//
LOCUS       KCLA01002894             833 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47127upu ultra-conserved element locus uce-7599,
            sequence.
ACCESSION   KCLA01002894
VERSION     KCLA01002894.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 833)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..833
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47127upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>833
                     /note="ultra-conserved element locus uce-7599"
BASE COUNT          245 a          165 c          159 g          264 t
ORIGIN      
        1 tagtcagagg aacggttcct ttctgtaccg cgtgtcttac acacgtgttc atgtacgtga
       61 ggagggcatg attatcaacc aaaccgaact ttgttggcaa cactcactcc cataaatagg
      121 agaaatgttt cataagccgt agtcaaagca gtccgacaac gagcgctgac tcgtgacaca
      181 tgtcagcttc ggaaagataa tgtattttct ggttttaaag actcaaacaa aacttttcac
      241 attcttcttt gaaaaaaatt gcatttgaag ccctttttca ccccaacaca tttttagata
      301 agagcacaca agtcctgaca ttatttcatt ttgttatgcg catctgtcaa ggaacagaga
      361 tatgatacag ctactaaaaa ctgatgattg tggaacagtg agacttgaca gcatttcatt
      421 tcctttatgt tctgattata catttatcag gaaacctgta tctcttctag ttgagctaga
      481 aattggtaga attcaggaac tcaaaggctt ggcaaagaac tgtcctatta tttggtatca
      541 tcttacattt tagagaagtt gcttggttga gtcattgtta aagcttttgc tgcttctttg
      601 atgattgtgg tttgctatcc agagatcaca tttctatagg ctctgtaact gctctgcagc
      661 tcaaattaaa cgccgggacg tttcatacat atacctccaa gtttcaatgg gtgtcaatca
      721 cagtttgtaa aatacaggga ttacaacctg atattaacat ccaaatccat tgtgtccgtt
      781 ttatgggtga aaatgagaaa gccttgtgca gacgcaacat ttcacagctg ctt
//
LOCUS       KCLA01002895             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47143upu ultra-conserved element locus uce-1961,
            sequence.
ACCESSION   KCLA01002895
VERSION     KCLA01002895.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47143upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-1961"
BASE COUNT          311 a          141 c          172 g          253 t
ORIGIN      
        1 gaaaaatagg aattggactg tacttagaag tcaaaagtag agtctaggaa ataaaaggta
       61 taaaaatttt ataagtacat gataaatgtg atcatttaat atagaataaa acaattcaac
      121 aacaattgag aaatataaaa tctagaattt ctttgcactg acagagaatg aaggaggaga
      181 catattcttg agtaagcttt ggaaatcagg cagcagttaa acagacttcc gtgggagctc
      241 tatcaaagta ggtaactacg ccgcaaatac caaattctgt ttcatcgttt ctagttttta
      301 tcacatcgta tagcataact ttcacatgag aacaaaggtc atttgaaagc aaactgttgt
      361 tctaaggtaa cttttaattt gaggaccaaa tgtaaattgc tatggtgaat gcacattagg
      421 tcactaaaac aacggtagct aaactcagat gtgacctagc aacccaggtg ttcaggaaaa
      481 gtgctgttaa cagtaaggat tgatgatcta atcaaactgt cacactcaga tcctcagcag
      541 ggtggttgga ggggaggtgg aggaggataa tattcagaaa gcaagcacat gcttagtgtt
      601 actttaaatt gatgctgaca ttttcaattg taaaaagaaa ttttttccta agtaatatag
      661 gaaacaactc tcctaacctt ccggaggata tcagataatc agagagcttg ttttgcaaaa
      721 gccaacttct ccgatgtgtg actttatgaa atacgaacta tcagacattt tagagattca
      781 aaatgatagc aaacatttta atgcttttct gtcacttagg tataaacgcg catttagcta
      841 actctgtgca tgtgtacctg ctatgcctgt accacag
//
LOCUS       KCLA01002896             903 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47158upu ultra-conserved element locus uce-6241,
            sequence.
ACCESSION   KCLA01002896
VERSION     KCLA01002896.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 903)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..903
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47158upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>903
                     /note="ultra-conserved element locus uce-6241"
BASE COUNT          288 a          160 c          149 g          306 t
ORIGIN      
        1 cagtgttggt tgttctcatt gaagtttata atgccttaga tattcaaatc agctttatga
       61 cttcaatttg ttatgcaaat ttgcaaactt tatatatcac atggtttatc tacattaatg
      121 cagctttcat taacaggact tagaggaata gatgtatact caatgcacat ttttagcacc
      181 ttgaattatc ataaaagcat aaaaatagtg tgtattgctc tagtctaatc agactcattt
      241 ttatgtggtt gctgaaagcc cttttacatt ctgttctgtg cttggacgtc tttgtataaa
      301 gccaattcag aaaaaaacaa agtgaagaca cctgctggct tataacataa atactaaaat
      361 atcgtagagc ctgctgaaag gcgaattgga acaatatgtc attactgaag gctcacttgc
      421 aagttctaat gtattataat gaaaacagta tgacaaacct aatgagacag tgaagatttg
      481 ggtaattgtt cctacaatgt atggtaactt ttccagccgt tattggcaaa cataaaacct
      541 aatgagattt tattaattta aatgcagtac atctgcaaaa catttcctta gttgcagtct
      601 cctctgataa tcttccttcc cacatgtact tgatcctttt aagttaattg atctgcatag
      661 tatacttcct aaacaaaaca caaaacacac cataaatgtg caataactta ttctgccagg
      721 cttagttttt gtggataagc tttcatacgg ggtggataga ctacagcttc tttcctgtcc
      781 tagaaaatgt gtatagagaa acttgcattt ttatcttgaa tttgattaag gcagcatctt
      841 gacacagaac ccagctttgt cactgttctt cagattgctt ttccagaaat ctgatggaag
      901 caa
//
LOCUS       KCLA01002897             724 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47174upu ultra-conserved element locus uce-3371,
            sequence.
ACCESSION   KCLA01002897
VERSION     KCLA01002897.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 724)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..724
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47174upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>724
                     /note="ultra-conserved element locus uce-3371"
BASE COUNT          171 a          177 c          150 g          226 t
ORIGIN      
        1 ctgcctgttt gggctgtgtt cattcagggt ttcaaacaga acagttgaaa acaaagtttt
       61 aggagcaata tgggacttgt tcccacacca tgagatacca tccccggttt tggttgtcct
      121 tcctggaacc atcagcccct ctagaaacat tttataggta aaaacatcta ctttttttta
      181 cggtggagag tccataaaac tgcacggagc atcagctatt aggagctcat tgaataattc
      241 attcctcatt gcaagtccat aatgtccttt ctcagccttt tgtggggctg ttttctcttc
      301 ttttctcctt gaattataaa aaggttgcct tcttttgttc acatcaagct gctgctagct
      361 ggagctttgt ctgcgcaaag ccaaagtgtg agtttcaatg gactcccccc tctttgtttt
      421 ccaagttcat ctccaagtgt aaattgtgta tagaaggcct tctttgtaaa agctggaaaa
      481 gttgtacaaa tgtttgacca gctcatttgg gacttttgtc tcccttctcc cagcgcctgt
      541 gcctgtgctg agcagccata gagagcccag ccctccctgc ccttctgctc cagcccagca
      601 gctcccctag agcaaccttg ggcaggttgg aagctcctgg aagccctggc caactaccaa
      661 aacaagcttt taagtgaaga aattaaatgt ggtgttcatt tgcagagtct ttagcctttg
      721 gcta
//
LOCUS       KCLA01002898             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47190upu ultra-conserved element locus uce-4106,
            sequence.
ACCESSION   KCLA01002898
VERSION     KCLA01002898.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47190upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-4106"
BASE COUNT          255 a          156 c          131 g          221 t
ORIGIN      
        1 gacactatag aacaaaaaaa tgttacctta atggaagaaa ggaaagttta ggaagaggga
       61 gaaaagctag caggcacctt gcccaaagtt tttgctaaat cctaaattta aaggaaagca
      121 aaatcaatat ccaccagcaa atgtacctca tgtgataatc aattacctaa tgtacaatgc
      181 ttgaaataaa tgcacttagt atggattatg tcagctcttc aattaggagt aaattcacgg
      241 cctctcagaa agcttctttt aattgtgttc tttgtggcaa cttcttctcc cctgacgctc
      301 atcatcaacc caccttatac tatcagtccc ccaatgctga acctgagaaa tcaatctgct
      361 aatgtataat ttgtaaagct cctctgacta acaaatggat aattgattct ttcgcaaatg
      421 ctgcatccca atggatatga agtggatgaa cgggaagcat aagactggat ttcactccaa
      481 ttttgtgaga aatgcaatat ttacaggcta ggaatctaaa tgtcttaata gttgcctgtg
      541 aattcatgcc ttttagccac ggttagcagg caagcaacac acattagggg tgtgaaaagc
      601 aaagcagtgt tcaatcattt ttacagcaaa gctcatttta cttcaagatg ttcacatcgc
      661 taatacaacc cccttcagca gcgagctcac cgcttcttta aaaagaattt tcagaaactt
      721 ttctaaatga agccaagcat ttttatctat gcatatacgt atc
//
LOCUS       KCLA01002899             999 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47205upu ultra-conserved element locus uce-6208,
            sequence.
ACCESSION   KCLA01002899
VERSION     KCLA01002899.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 999)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 999)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..999
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47205upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>999
                     /note="ultra-conserved element locus uce-6208"
BASE COUNT          297 a          207 c          227 g          268 t
ORIGIN      
        1 aaagagcttg ctctggattg ctcacaagag aatcaacaga ggaattggca acttctgtgc
       61 agttttagct ctgaagtaat caaggcaggc ttttgcttta attacttatc tcaggacagc
      121 ccatcagatt agcaagaaaa aagaaaacag taaaaagtat taaaacttag tgagttactg
      181 ggaacttttg gaactgaaaa ctatacagat ggtctacaac atatttgtat aggagatgcc
      241 caattgtaga agggtatcca actattatag gagcatacta aggcagcaga tactgggcag
      301 tgagcactga gcaactgttg tcactgagcc ttcccctctt ggctgcatcc ccactcgccc
      361 aacgagcagt tttggtctcc cagagaggag acaaaggttg ctttggagaa gctgggaagc
      421 ctcagaacac catgtagatt tagggctgga taggaggtat tgtgtacagg ccatgcccat
      481 tactcatccg ctggcaacgg gctctcttcc ttttgtctgg gaagacggta aactttcaat
      541 gccattggga aacagaaggc ctttcaggga gagcaagaac tctgccatct caatcatgtg
      601 aaaatattgt aaacactttc ccagccccca ttcagctgtc aagaactaga aaacagcaaa
      661 caaaacaaga agggaagaaa agggtgtgca gtgtgcgctt ccatttaatt tatatttctt
      721 atcctgagta gaagttgtgc ttggaatttt tttacagggt taagtagctg ttatggagaa
      781 aaaacagtta aagcctattc taggttttat ttagagacat aaaaaagacc agtgctcagc
      841 agcttctctc cagcaaagct tctctcatat ttcctcacag cctgtgcatg aatagatttc
      901 aggtgggctg tgggacttga attcctcttg cagggctggc ccacctctgc aaaccttttc
      961 ctggagggtt tcctatccaa acataccata gagttgtgt
//
LOCUS       KCLA01002900             863 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47220upu ultra-conserved element locus uce-3570,
            sequence.
ACCESSION   KCLA01002900
VERSION     KCLA01002900.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 863)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..863
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47220upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>863
                     /note="ultra-conserved element locus uce-3570"
BASE COUNT          285 a          156 c          143 g          279 t
ORIGIN      
        1 tttgaaatga aagtttgctc aaaagaggag cttgcttata ctttcctagg ccaaggatca
       61 ttccagtctt gttggggaaa aaatagtacc agttgaagct aaacattaaa ataagaccat
      121 gacatgcata gttgtgcttt tctatctgaa agattcattt gccaaagcag aaacattcac
      181 agatacacta gcattagtgg aaacttctgt aagtggtaac cctgaggtgg acttgatgtg
      241 cacaaacatt tccaagccag ttaccccttt gcatattttt ctgagggggc atccataagt
      301 ataaaaaaaa cagaagctca tacttacatc ctattccatg ttactttcca agctgtgagt
      361 ttcatcttgc attagtcacc atatgatctc tatcataatg gtgggggtca atgaatagat
      421 tagctttatg ggaatttaca gttcttccat gcatctaaag tttggtaagt ctggtaacca
      481 ctgacctagt tttaatcttc ccccactctt aacttagaag tattaaaata aaagacttaa
      541 atttaattca agtttcaact cctcataaaa tcttggatta tgttacaaat ctacctacag
      601 aaacacactc aagtgtatgc cttatactgc agccccattt agccttcact tataaatatc
      661 ttgacttaat gtatgtgtag aaacttaagc tgtccttatt tatgttaaag tgagaagact
      721 gcaaaatagt cagtagcaat caaagtctta gtacaaagat gtcaagggcc actttaacgt
      781 ggtagtttct ttttgacttg taaagaacta tatgtaaatc aaacctaata taaacataat
      841 tttaagtgat attgtaatgt act
//
LOCUS       KCLA01002901            1014 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47235upu ultra-conserved element locus uce-261,
            sequence.
ACCESSION   KCLA01002901
VERSION     KCLA01002901.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47235upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1014
                     /note="ultra-conserved element locus uce-261"
BASE COUNT          349 a          220 c          167 g          278 t
ORIGIN      
        1 aaaaaccagt gcccatttag ctagtgacct gtaactgtaa gccttcctgg gtttgagttc
       61 tgatgcataa aacaaggagc atgcatataa ttattatgca gctggactag aaaacctatg
      121 atttattaaa aagtggaaaa aaaaataata ccaggaataa tttgcctgca aatgcaatca
      181 catttatcat acactaccac caatgtacaa tacaaaatgc tcacacctaa aaaccaaaca
      241 cttgttttat gccaattact cttcttctaa tcaaagttaa ataaaactgc atcttcataa
      301 ctcctctaaa aagtaaaagc attcagaaac ctataaaagc agcttgcagt taatattgta
      361 cactgtgtct aggtctgtca cacaaaagaa agatgacaag ttcactgcaa taaaaattcc
      421 atgcttagaa gactagggct gctacctatt agtcttcatt actttgcagt cttctgacaa
      481 ctgtagcagg ctgctgagcc ccaaatgggg gccataatgt gatctgatga tatatgaaga
      541 gctgctaaag ggagcctgaa ccatcctagc ctatacattt taaccgttcc tttttactga
      601 gagcccactt taccacaaga cttcaaaaat ctgctgcctc agctattggt gcagtaaatc
      661 tgccaactgt gcctgcaacc acataatttt acactgccta cagaagccaa tataatgagt
      721 caataataaa ccaaggacct tacaggccat gaatagctgg tttatattgg cagatgcaag
      781 cacagctaaa acctctgacc agacaaacac cacaaaggac ccttttaaca gtttctatgc
      841 ttccttgcca ttaattattt tagtgtgtat ttaacatgtt ttctaaacat aaagtaacca
      901 ttatttgcaa aagccagttt acccaccctt tagctgctga tacaacgcag cgttttcagg
      961 ccaaggctca gcggctgtgg aagagaatga attaattaag caagtgaaat agca
//
LOCUS       KCLA01002902             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47251upu ultra-conserved element locus uce-4693,
            sequence.
ACCESSION   KCLA01002902
VERSION     KCLA01002902.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47251upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-4693"
BASE COUNT          214 a          171 c          250 g          310 t
ORIGIN      
        1 gcttgcggag ctgtggctgt ttgaaattaa acgtgatctt tacagtacca gctggggtct
       61 gtaatgtatc tgataaatga agctcttccc gtcgctttca ggtcatgcaa ggaaaagggc
      121 aaagctgggg agggagctgg gcggggtttc ccttcgcttt tcacagtcag gcgagaggag
      181 tctggctgat gtctgcagca gataaaggag acaagaagat catcaaaaga cccagaaaca
      241 cttttgtctt tctgctgttt ttctttctaa tttcatttat cgttgctgtg ttgttggtct
      301 gcttgtttcc ccccttcaga aggggtcggg tgcaccaggg ccctggctga ggtagtagtt
      361 tgtgctgttg gtcgggttgt gacattgccc gctgtgaaga taactgcgca agctactgcc
      421 ttgctagtgc tggtgatgat cagctgcaga tgaagacaat gacaatggga atcccctttg
      481 ttttctcggg attgcgtgtt gctgaggtgg caacaatttc ttctacttct gctgaaggag
      541 cttaaccttg gccactgaga tgagtagtgg ggttcgaccc catcaatagg atgttgctgt
      601 tcgtttggag ggcacctgaa ttttggctga agagcaggcg tctgcatttc ttcttgtgct
      661 taaaccttgt tattcacatg gcacgcttgc aagaggtgga tttgttgttt tgtgaagaca
      721 gagatcagcg ataaacttgt accttctgtg ctttgaatat gctaaacttg tgtgtgtgat
      781 attaagtgct tttgtctgaa tggtggaaag tcctgaatat ctaacaaaag caagaatatg
      841 taattaacgt tttccttaca ttgataagat tagtttttta caatgtagtt gactaattgt
      901 gctctttgat gctaacagtt ttataggtga atttttcctg tgtat
//
LOCUS       KCLA01002903             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47267upu ultra-conserved element locus uce-6937,
            sequence.
ACCESSION   KCLA01002903
VERSION     KCLA01002903.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47267upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-6937"
BASE COUNT          284 a          171 c          172 g          224 t
ORIGIN      
        1 aacctgtggt tgtggtacta aggacatcta catacagaac agatacatca tcaggtaggt
       61 ctgacatgtg caagcacacc ggtgtgagca cacacacaca cactccagta gcagggtaga
      121 aacagagaac tatttggaaa atgtcttttc tgtctaaatc actgacaaac ctccttaaga
      181 agtagccagt aaggcaagta agctaatcag tctctgctag tattaagtct aaaacaatct
      241 ccagctgaaa tgtgattaat ccatgcatga cagcttaaag gtcaaagcta gaatgcagag
      301 cttcttgact gcaaagaaag aactgactta tttttatctc ttctttaaaa attacagcag
      361 ccatgaagtg gctcaaggag cagagtaatg aacgtcataa acctgcctca taaaaatggc
      421 attcatgcag taatacagca ggtcagatga gcagggaaca tttcattaaa aattctcctt
      481 cttgcctacc caagagagac ttaaaactaa tcatataaaa tggctgagtg acaccattaa
      541 cgagcattaa tattttaaag ctttaatagt acaacagagc taggctgtta tatcaaaatt
      601 atacaacctt attaggcagt gcacttggct gcattgtact tgaactgtca gtacccctga
      661 ttggaaatat taaggtggcc atgaaccaca gtgcgaatac cttagctgtt gtttggctgt
      721 acttccaacg cctggtagtt tgctgagtgt agacggttct gtgaggaaca cactgattta
      781 ccttacctgg accaaaggag agggatcttt actgtgagaa acaggaaacg ctgctctcag
      841 aaaactatta a
//
LOCUS       KCLA01002904            1119 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47282upu ultra-conserved element locus uce-7529,
            sequence.
ACCESSION   KCLA01002904
VERSION     KCLA01002904.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1119)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1119)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1119
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47282upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1119
                     /note="ultra-conserved element locus uce-7529"
BASE COUNT          319 a          251 c          241 g          308 t
ORIGIN      
        1 ctacgagaaa cgttcacggt gacacgaagg caagcaaatc attcggctat tgtttcaagt
       61 gttcttttta aacattgaaa tgcaaaacca ccctgaagat attattcagc tataccaaca
      121 atgatcttcc cagactgctt taaattgctc aagttcctgt gtaaacacta attaattcca
      181 agagtacccg gaactttcag atgttaatat taaccttgca aaagcgagag gatttgcttg
      241 tgtgcacgag gactgtgttc cctgcgtgta ctcgcgtgca cagactctgc agtcatttgt
      301 cagtctctaa taagaaacag aagtgacatc tgtcatgcat tccagtaaac acattaagca
      361 aacacaatgg gaccccaaaa tgtttactcg aggactctaa ttaattgtga cttgctgtaa
      421 cagagttttc tatgaattaa acggaaagct ccatgctctc gcctccccct gccgtagctt
      481 tttgtgcagt gggaaaagat ttaaactaaa gagtcccctt ctggccctgc caaggtgcat
      541 tttttcctca tagacttgac tcgcagtaga agttgatgtg agagtttgtc acggctgttt
      601 tgacagtccg gtcatcctaa tccagggatc tggtccctgt ggtttgtcaa ttatcctact
      661 aaccctacag cgagaggaac actcaaggca ctgaactgtc atccactaac caagaaataa
      721 tgtcagcagc cagtgagcag ggattgcgag agatggcgat gcttttgaca acagacaagc
      781 gtggatcgtt gcagcgttta ttttatttat aggcaaacgt aacagattaa ttacagcttg
      841 gctaaaactc gccgcatctg acctgcatgc accggtggga tgatgatgcc ggtgaaatgc
      901 agagattgcc agcacagcca ggcatggagg ttcgacttcc agtttctttc cctcctctcc
      961 tgcgaccttg agcttgttac ttgactcgga tatgtttgga tatcctcccg gataaactga
     1021 ggataaaagc atccactctt aagagcagcc ggagccttaa tcaattaatg cctgtaaagg
     1081 acattaagat catttagtaa aaggtggaat taaagtgca
//
LOCUS       KCLA01002905             464 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47312upu ultra-conserved element locus uce-6663,
            sequence.
ACCESSION   KCLA01002905
VERSION     KCLA01002905.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 464)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..464
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47312upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>464
                     /note="ultra-conserved element locus uce-6663"
BASE COUNT          103 a          134 c          147 g           80 t
ORIGIN      
        1 aaggtttcgg gctgaaccct ggcagcgcag ccatgaccac cttggggagg ctacagcaag
       61 cggagcggag cgcggggctg gggaagggag gagggagccc ctcagtcagc aaagagttaa
      121 cggcaaatga actccatcca tcaccctgac aggaacctac acgcccaatc tgttcttgct
      181 gaactacaag cacaaggcat ctggggtttg tccccttgaa gctttttgca cattgaaagg
      241 agtttggagt gggtgggagg gcacgactga ggtcgctgaa cccgtcccgg gctgtgtcac
      301 tgaaacttcc cagcgctcgt agcacgggga gggctggctg ggctggcact ggccggagga
      361 agctgcggca ctgctgaccc tgacaccggc ggccgatggc tgtcaggtac caaacaacag
      421 cagaccttcg acgtccaggc ccaagcaaac cccctccctc tttg
//
LOCUS       KCLA01002906            1051 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47328upu ultra-conserved element locus uce-1908,
            sequence.
ACCESSION   KCLA01002906
VERSION     KCLA01002906.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1051)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1051
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47328upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1051
                     /note="ultra-conserved element locus uce-1908"
BASE COUNT          319 a          195 c          228 g          309 t
ORIGIN      
        1 ccagctggtg agagggtcat gctctgataa acaataggaa ctggagtgtt agaaggaatg
       61 gtcagcctct gcgaggctct tctctggctt aaatcactgg aaaagaagga tcctcaaact
      121 gggtgcaaga attatcatag ccagcaccat gccttcacat gactttctgt tgtctggggt
      181 gaggaggcag aacatctgga aaatgaagcc agtaagacca gcaaatactc tgtgacctga
      241 agctctaata ggacttgcat actgtttgaa agaacatgag gagaaatggt gcctcaaggg
      301 cctgcaactt cagttcctct gagcttcctg ttttaactat aaacttatca tcctataacc
      361 tttctaacaa agacataaac acttcagcta catatatttt gattgtttca tgacagttta
      421 ctggaggttt agcaatgaca gatttcttca ttgtcttttt gccaaaattt gtcctttaag
      481 tcatttttgt tgactgcccc ttttagcagc tcacctcaca atgagagagg agacaattaa
      541 tgggagggtg atttatcact gccaaaaact gtcaaggact tctgttgtag ctggagaaaa
      601 agcaatttca cattatggca tttcattccg aatacattgt atttacagct cacagtttta
      661 ttttcagagc ctattatcag gtgaaacagt tgcatctgaa atgttgtttg tgacataggt
      721 gacctgttag gatttgataa gtatttacgc cagagcacaa ggggctcaca catctgctgt
      781 tggcagaagc aatggaaaaa aataacctgg aaatgaggcg tttgattttt ctggttccta
      841 cactcgagca tctgttgcta taattaagtg gcattcagta attgcagagc aatggtgaaa
      901 taaacataag cattcttgcc agcttttagg atttggtgtc cttacagtag gagagacaag
      961 caaagtgact tcgtcaagaa caaagggttc tgtagcaaag tttagcaatt cactttccta
     1021 ttgcataaag aggaattata caaaggaaaa g
//
LOCUS       KCLA01002907             207 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47342upu ultra-conserved element locus uce-4414,
            sequence.
ACCESSION   KCLA01002907
VERSION     KCLA01002907.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 207)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 207)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..207
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47342upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>207
                     /note="ultra-conserved element locus uce-4414"
BASE COUNT           69 a           42 c           45 g           51 t
ORIGIN      
        1 cagagagaga gagagagaga ggagaaagat ttcattacat tcagcacagt atgagactaa
       61 gtcaaagtag ttttgctaat taaattcaat tgctatccat tagaccaatg gaatgagatg
      121 aatctaccat atagctgaca cagcacaggt atgcaatttg gctaaatggc catttcggag
      181 ctgcagcacg ccttcctccg ctcactc
//
LOCUS       KCLA01002908             997 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47357upu ultra-conserved element locus uce-1123,
            sequence.
ACCESSION   KCLA01002908
VERSION     KCLA01002908.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 997)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..997
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47357upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>997
                     /note="ultra-conserved element locus uce-1123"
BASE COUNT          316 a          211 c          174 g          296 t
ORIGIN      
        1 agccttttac atttttaaaa taccaaagag aagcaaacca gatatttacg cacaattgac
       61 aagtctttac atatagccag catctttgca aaatttatcg taggaattca cccactgggt
      121 ttttttaaag tacacttaca ttttgtgata ctcagttgtg ctcaatattt agttctgtta
      181 tgtgcattat cctgctgaat gatcaaatta aatgcaaact agaatttgaa tgtctgcaaa
      241 cattggcaag actctgccgc taattttaga tggaagattt gcagtgtctg ttgtttttcc
      301 ttttcatttt agatgggtaa attgtaaaaa cgttgaagaa tctgacctgc ttttttttcc
      361 cccctttttg tctaggtttg caaggcatgc caggggacta cgtatctcag ggtggtccta
      421 tgggtatgag tatggcacag ccaagttaca ctcctcccca gatgacccca caccctactc
      481 aattaagaca tggaccccaa atccattcat atttgccaag tcacccccat cacccagcca
      541 tgatgatgca cggaggaccc cctacccacc ctggaatgac catgtctgca cagagtccca
      601 caatgttaaa ttctgtagac cccagtgttg gtggacaggt tatggacatt catgcccaat
      661 agtataaggg aactcaaggg agcaaaacag aacagaaaaa caaaaacaaa aactatttta
      721 agacttttga actttgacca gatgttgaca cttaatacga aattccagac agctgtgatt
      781 attttttact ttttgtcatt tttcatcaac aacagaggac caacaacaca agaacacaaa
      841 tgtgaaatca tgggctcact gaaatgaata tgtccatgta tagatcctct ggaaaaaaaa
      901 aagactccaa gagttataac tactgtagta taaacatagg aactaagtta acttgtacat
      961 ttctgttgat cactccgtta tgttgcctca aatagtt
//
LOCUS       KCLA01002909            1093 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47373upu ultra-conserved element locus uce-4964,
            sequence.
ACCESSION   KCLA01002909
VERSION     KCLA01002909.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1093)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1093)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1093
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47373upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1093
                     /note="ultra-conserved element locus uce-4964"
BASE COUNT          354 a          212 c          209 g          318 t
ORIGIN      
        1 gaaaaaaaat tacatgcaaa ttatttagaa ttttattcca cttttcaaag catgaagtta
       61 aatgttccca tttctgaaaa taataataaa aatcaataac tattattcag gattcatttg
      121 atattccaca atggaccact gtgaatttga actccgggaa aggttgccgt ttcaagcctc
      181 taaagagtta ttatataaaa gagagaaaga gagtaatttt taaaacacgt taaaaacagc
      241 agaaaacgtc cttccttttg gattttaact acagatgagg aaagacagaa gcacgttaat
      301 tacaattacc agcttgcagt aatgacggta acaagacaga tacagacagg gtcctgttac
      361 aacaggtaat agatgcagga aagaccatcc attaataccg tgggctcgaa gcaacacgcc
      421 tcacttttag gaaacatacc agcagaaata actagtgtat tatcctgtgg ttgcttagag
      481 atgacttaac gagttcctga gaacaggcca ttagctagca tttgcttttg ctattaaagc
      541 tggatactgt tttcacccct tctcctgtct cccgcagctc agcacctgtc tttgtttggg
      601 agtgacatct atttcttttt ttccaccagg aattcggtgc atttttaggc ttgagtggct
      661 taggagcaaa ccagctgtga aattgtttct tgagatactg ccctcttcat aacatttgcg
      721 caagacctta ataaaagaaa tggcctgttg ccctccctgt ccctggccaa ttgcacccac
      781 gaaatatatt tcagtaatgc aattttttgg ggctgttgaa acaattgccg ctataactgt
      841 aaaacacagc tagattgctt ctgaactact ttcaaaaagt aagggctcgc gagagagtca
      901 gctcccaata cacttttatc cttggaggag agaggaaagt catattgagt aaaaaactaa
      961 tgtcgagact gtataatttc tagcacattg actccggata attgcagcgt taatattaga
     1021 gtaaaaaaat atatcagcaa tagggcacca ccagagttta ttgtgggcta acaatggatg
     1081 cagttcccat tgt
//
LOCUS       KCLA01002910             376 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47389upu ultra-conserved element locus uce-3260,
            sequence.
ACCESSION   KCLA01002910
VERSION     KCLA01002910.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 376)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..376
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47389upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>376
                     /note="ultra-conserved element locus uce-3260"
BASE COUNT          127 a           88 c           72 g           89 t
ORIGIN      
        1 aaattagaag atctggcctt ccccaccatt gttatctttc aattaaggaa gccgtttccg
       61 aagccaccat gcagtcccca gctctgctca gctctttttc acaaacagaa aaagatcagg
      121 cttaactagg ctagtctcat ttaggcccac gcctacaagg gagggtttat taaaattcct
      181 tcagcttaag ctgacgcagg ttcaggaaat ctgcttaagc caagcctgac ctacataagg
      241 cttcagactg aagaagacga gaagaaacaa gcaaaataca cttttgtgca aggagaccaa
      301 acacacggca ggatttaaaa cagaaaggtt taaagattag gacattaccc agctaaaaat
      361 tacctaattt agcctg
//
LOCUS       KCLA01002911             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47403upu ultra-conserved element locus uce-6009,
            sequence.
ACCESSION   KCLA01002911
VERSION     KCLA01002911.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-6009"
BASE COUNT          168 a           99 c          100 g          117 t
ORIGIN      
        1 aaacaggcat tagaaaaaat agactagtgt tttctctctc tttttctatt tcagaaatgt
       61 gaagaggtag gtgttaccag tgatgctcgc tgaaaaccct acgcaggctg ctctatgact
      121 gacctagttt ctacagtctt taaaagctat ttaaacaaaa attaaaaggt aacacgcccc
      181 tacttctttc tgaaaaatcc acacaactga atattggcta aaaagaaaag tgctcagaag
      241 aaagagaagt acaaaagcat gcctgcttgt ctgtgttcaa cacaaagaac gttaaatgaa
      301 aacaactggc atgccgccaa attcctatac aggcagagat tcaaataaat tgatttcacg
      361 catcacactg acctgggatc agtgagcagt ggtacaatac acccgctgct ccatgtgggg
      421 caaagcccat taatgttatc agagccacag tacattacca agaggagggg gagagaggtg
      481 ggaa
//
LOCUS       KCLA01002912            1104 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47418upu ultra-conserved element locus uce-5649,
            sequence.
ACCESSION   KCLA01002912
VERSION     KCLA01002912.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1104)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1104
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47418upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1104
                     /note="ultra-conserved element locus uce-5649"
BASE COUNT          330 a          232 c          235 g          307 t
ORIGIN      
        1 aaaatttatc tgagtgaaca catccatatt tttgcactga taaagagcat taacaaagag
       61 atgcagtttc ttttatgtta agcactgaaa tgctcacaga gtgcaatctc cttatagaaa
      121 accttaagga aaaattgtta aaggaaatac attcacacta atattaagac atacaagatg
      181 cactgagaca ctgacagagt atagttcata acactgtgtt aaggaggagt taaaaacaca
      241 gaaggtaggt agatcagaag cacatctttt aatttcatat ttgtatcttc cccacctcct
      301 tctccccatt caaagtagca aaaaaaaaaa aaaaaatagg atagaattac aatgtttaca
      361 attcagtgaa tgactttcat gaaagtctgg ctactgcact gtactgtaaa gatcacagca
      421 tgcatacctt ttcctctgag tgccactgct gaccagtaag tttggttgct gtgggccctg
      481 actatgcagg aggaaagtgt ctatgcttgg ctcggtggct gatgcctcct cacttacttt
      541 agggctgccg atcttgctct ttccaagctt gcctttggtg cgtcgggact gctcatggtc
      601 aaactctaaa tcctccagtc gctgggtgag ggcaagtttt tgctggatag ccatgcgcaa
      661 cagagagttc agggtcttct tctcatcctc tgcagctgct agctgtctct gcatctcatc
      721 cagctgcgtg acgtactcat cgcacctggg aaaacaaaca aggcagaaat ctgggaaaat
      781 ggtccaagaa cggagccagt gattcaattc ctgggctgca gttacaaagg cgcttcagct
      841 tttgtcagac ctctcctgaa aacctgaatt cttccatttg cacttaggta aatttggatc
      901 tggatctgaa tgccagtgtg tccctagcaa gagaaccttt acctatagca tcagaatagt
      961 ctttggcaat agaatgggtt ctattggaca caatgagcaa atggagggga agtttgggac
     1021 aagctgcaag ttagactaca aataacaatt atgggtgctg gttctgctaa tatctcatca
     1081 tggataagat tacctagcaa ccag
//
LOCUS       KCLA01002913             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47434upu ultra-conserved element locus uce-6575,
            sequence.
ACCESSION   KCLA01002913
VERSION     KCLA01002913.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-6575"
BASE COUNT          171 a           90 c           88 g          144 t
ORIGIN      
        1 agagaatcaa cagtagagga aaaaaggtat attatcaatt acaaaggctt ttttttctgc
       61 agcatttaaa ctctaatgat tctttccata ataaaacatt ccatgctgct gcaaaaccag
      121 ctaaacggtt tatatttggg gtaataaagg ttttttcaca tctattaccg aagggaaata
      181 ttaaggaggt ctttgactgt acatgctata tgagcaaaca ccacttaagc caggctctgc
      241 ttcctaaaca agtatttaat ctcctcatta aagatatatg aaactagaaa tcgatgagca
      301 ctggtggtta gagcttttta gcggaactaa tggctacacc ttgtctaaca ttagaaactt
      361 cacttgtggt ttacagctgc tacacagaga gaaacatgaa cctagaagga aagacttcca
      421 gtcgtgctaa taatgacact aagagttctg gataagcagg tcatgtacat gtaacctaaa
      481 atttcacttc aca
//
LOCUS       KCLA01002914             388 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47449upu ultra-conserved element locus uce-547,
            sequence.
ACCESSION   KCLA01002914
VERSION     KCLA01002914.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 388)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..388
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>388
                     /note="ultra-conserved element locus uce-547"
BASE COUNT          138 a           53 c           75 g          122 t
ORIGIN      
        1 ttaacagcac acacttaaaa cataataaag cacttgttac tgtattttat ggaacggaaa
       61 ctccaaatgt aaagatgtat taaggaaata tctcaaagtt attagggaag gatatttaca
      121 attacagatt gctttatatt atgcttttat gaacatctca ggaaatgaaa tagccctcag
      181 ctgtagcgag tgaagaggga ggtaattttc cttaatacgg gtgataaaat taatctgatt
      241 gaaatcgcta gcgattattt cgcagaatac tgagtggcag tacaatcact tacactcttt
      301 tatatttttt tagtcaaagc tcgtgtagat gaaagctaat tacaaagtag tgatgtgaag
      361 cgctaaggaa atagtttgta tagcatag
//
LOCUS       KCLA01002915             752 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47463upu ultra-conserved element locus uce-4007,
            sequence.
ACCESSION   KCLA01002915
VERSION     KCLA01002915.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 752)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..752
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>752
                     /note="ultra-conserved element locus uce-4007"
BASE COUNT          257 a          141 c          136 g          218 t
ORIGIN      
        1 cactgtgact ttccacttgc acgaggtggt taatacaaaa ctaacatgac taagatacat
       61 ctaccattaa aaccagtatg gcacaccaaa acgtaacaat agctttcaca aaatctttta
      121 cataatcatt tttatcaaac aaaagccata tgtttttaaa gaatcaagaa cacaccatgc
      181 agtcaaattt cctaactgac tggagaattt ttcatttcaa ttacagcact gaagccagtg
      241 atgcttggaa tgcccctcag accatgtcat gggtgatcta gtaaagatct atcgttagat
      301 caattactaa aagcagtgga acatctgatc ctacctttga aattaagctg gaaaagtagg
      361 tcagcacacc ttcagctgac acaatgaagc attacactcc cagtgaccca ggaagaaaag
      421 caccagtgat tgatgggaag atatttaaat gagaaagttg aagcacagta gaattaagca
      481 tgtcaaaatg atcaagcaac tctagacagc caagtgactt caggtaatgg caattgtggc
      541 caaatcttat gtgagtttat tcccccaaaa taacagctgt atttatcatg gaatggaaga
      601 gtatttatgg tttgaagata ttacagtgcc tctaagttgt agctcgttct ttgtgttttg
      661 ataccattgt tttgctttca tcagttgttg tagtgtctaa aagatagaaa agactttttc
      721 tgagtagtta aacccattaa aactggcatc gt
//
LOCUS       KCLA01002916             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47478upu ultra-conserved element locus uce-5684,
            sequence.
ACCESSION   KCLA01002916
VERSION     KCLA01002916.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-5684"
BASE COUNT          207 a          160 c          188 g          234 t
ORIGIN      
        1 tgctccttac agaggtgctg gagaaactag gagccagcct tgggctgaca ggtgcttttc
       61 actcttagtt tgagagcagc aaagagtatt gagtttctca gtacattggc agcagcacac
      121 ctccagtgta acagggcgag aggtgcacac gctgcacaac cctggcaggt ccatcctcat
      181 gcttttgtct tcggtggctc tgccttttta agaagcaaat actagccagg cagacaacgg
      241 taaggaaagg aggtacttct acaagaaata ggggggaaaa ggtcatagga agggttgtag
      301 actatttagt ccctcagcta cagctctgca ttgaattgga gtctaagaag tgtatattaa
      361 cattcagctg gctgttactg tgagccataa tagacacgag cattgactag acccaatatt
      421 agtgatggta ctgggaaacc atccttgctt ttggctgcct gaaggcagta gtgatcccct
      481 gcttgtccta tctgtcagtc tatttgatct ccaaatgaat tgcttttgat aacagctata
      541 taaatgcaga actgttccgc tgggccttct taaatgagac tcctctcttt catctcccag
      601 tcatttcaaa aagcagatag acttgttaga ggtttttaat gcaatgattt atgttttatc
      661 ttgcctggtt tgaggcagca tttatttagc actaaattct tcccaagcct atatatgagg
      721 gagaaacgct tcaacacaat atttggggac ttaaaaatcg cgtgtgcttg tgtgtgtgtg
      781 tgtgtgtgt
//
LOCUS       KCLA01002917             971 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47494upu ultra-conserved element locus uce-5475,
            sequence.
ACCESSION   KCLA01002917
VERSION     KCLA01002917.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47494upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>971
                     /note="ultra-conserved element locus uce-5475"
BASE COUNT          339 a          171 c          176 g          285 t
ORIGIN      
        1 acaattactc acctaattca acatgcaata tgaaaacaaa gtgcaaaatg tagtatagag
       61 cacatgagcc cccagctagg ggctgactgc cctcacacgg aatgaaggct tctgagaagc
      121 atgcaggctg agctgcttgt gacaggtttt tgtagccatg tggtagtgct tattgcaact
      181 cactgcctaa gaggactcaa aaccaggttg ctctttttta atcagaaaag tagggtgtaa
      241 atcaaatgtg ctgccttaaa atgagcaaaa gtccaggaac cagaaaaagg cttcaaaaac
      301 aaaagaaatt atttctagca gattacagaa tggtttataa gaactgcaca gagctccttt
      361 tagtaaatgt cgtaataaag gttcattgat taaaagaaat tggctctatt gctcgtaata
      421 gcatctcatt gattgaaaag cattgcctgt aatggtttcc tccaaaacag catctgttat
      481 gtattaacct ctcagccttc agaatcatgg gatatgaatt tcttgttcaa actactggtc
      541 agatgaccca tccctgacat ttaataaatt gcagctctgc acatagaatc aggatttcat
      601 aaaacaggga gaaacacatt ataaaaaagg catttttttc acaataaccc agtcttttca
      661 gttaaaaaag aaaatcaact aagctcagaa tgtaaactct tttattaaag ccaccaagaa
      721 aaaaataatc cagtctttaa tggtaaaaac aatgcagtga tttaaatttg actggaagaa
      781 aacctggcat ttctagtgtg ttgagaaaaa tcaaacaagg acaagacagc attgatctgt
      841 ctttgcatca gttaaaattc tgtggttacc tatcaaatgt acatcagcta tagtgtgtgt
      901 acagggctat aggaatatat ttttgtatga ttttctctat tcttagtatt taaaaattgc
      961 tatagcttgt t
//
LOCUS       KCLA01002918             710 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47510upu ultra-conserved element locus uce-5050,
            sequence.
ACCESSION   KCLA01002918
VERSION     KCLA01002918.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 710)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..710
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47510upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>710
                     /note="ultra-conserved element locus uce-5050"
BASE COUNT          143 a          201 c          197 g          169 t
ORIGIN      
        1 ctgaccatcc ctttgcatct tctgtagctc ttcccatgaa gagacccctg gctcccaccc
       61 gctctatggc cacggagagt gcaagtggcc cggatgtgaa accctctgtg aggacttggg
      121 acagtttgtc aagtaagtga gctcatgctc ttgaccagga cggcatgggg ctggtggagg
      181 ggtcgggaca ccccagagcc acaacaaaga agagtatagg aagaacatcc accagggatg
      241 gtgctagagg agaagagaca gtgcactgct ctccttttgg gggggatgga gcagatggcg
      301 tcacggcagc ttgctgacac tgctcgtggg ctccggtgct gactgattaa ctccgctgct
      361 gaagagccct ccgctagcgt cggggtcaaa caaattgttt tcacgcttcg tcagaggttt
      421 acttaattag ttcatttgca attagatctc tttgtagcca ggatttttag caaagacatc
      481 agaaagaact gacgggctcg ctagctcctt tccctctgct tccccggctg gctgctcggc
      541 accgcttcag ttgccttcag cagggtgtgt ggttgtcaca caccgacccc gtccgctgcc
      601 acgcaccatc agttccgcat ccacacccag ggtgatgctc ctgaagcccc ttctcctggg
      661 atgtcccagc agtcttggag gtcgtttgcc catggcccac cttttggggt
//
LOCUS       KCLA01002919             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47525upu ultra-conserved element locus uce-7569,
            sequence.
ACCESSION   KCLA01002919
VERSION     KCLA01002919.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47525upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-7569"
BASE COUNT          241 a          163 c          195 g          327 t
ORIGIN      
        1 aaggtgaggg taaggctggc aacagaagtc agtggctgtt caccttccag tagcaaggat
       61 tagctgtcta catttgcagg caaaagcaga gctccctggg aagctgtggc taagaacttt
      121 caaggcagct tccattatct gctgtttagg tcaagccaac tagcacttct gagtaattca
      181 taaagtgcta tactctgagg tattgcacaa tctcattatc attagttttt gcatatttaa
      241 ctacagtttt taattagatg gtattttatt attcatgcac ataatttgac tccaactcag
      301 gcagttctct tgtaaaagga aattcatttg aatcaaaagt ttgtacttca tggtgtttag
      361 ctggcaagtg gtgcaagtct gcagtctata atggctttct tttaatttag ctaatagcta
      421 tcatgttatg tacctttata aatttgttaa attcatagca ctgggagttg tctctctatg
      481 tggtaactgt aagtagtttg ctgtgtttgg ctttcacata caaactgttt gctcaggctc
      541 cttgatgtat tattaaaatt ggtaatggac tcctgggacg tcatctagtt atatgccttc
      601 atttgcagaa taaaccatgc gttgttttca tctttactca tgattgttaa tggcattgat
      661 gatgagaggg gtgtttttcc actgccttta tcagtgctgc tttattatgc aggcaaaata
      721 gccaagctgc tgattttgtt taaggttttc aattagtcat ttgactgaac acatctgtta
      781 ctggcagcct tccagccctg gactagagct attactagtt tacacctgct gaaccatggc
      841 cataagctgt gaatgggaat aaacctaaat tggcctttta gatatggttg aaaagttgtg
      901 gtgttgcagt gttttactgc agtgtc
//
LOCUS       KCLA01002920             176 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47540upu ultra-conserved element locus uce-6044,
            sequence.
ACCESSION   KCLA01002920
VERSION     KCLA01002920.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 176)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 176)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..176
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>176
                     /note="ultra-conserved element locus uce-6044"
BASE COUNT           60 a           36 c           34 g           46 t
ORIGIN      
        1 cactatagca tgccccttct tctaaaggca acctaccacc tctaccaaaa acaagaagga
       61 aagagagcct aaaagggtga agaaggattt tcattatgaa gttaattagc ttctgagcca
      121 agttgcacct tttcaagagg agaaattaga gggatttaat tgctttatca gccttc
//
LOCUS       KCLA01002921             913 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47556upu ultra-conserved element locus uce-335,
            sequence.
ACCESSION   KCLA01002921
VERSION     KCLA01002921.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47556upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>913
                     /note="ultra-conserved element locus uce-335"
BASE COUNT          309 a          195 c          179 g          230 t
ORIGIN      
        1 gtgtgtattt aaaatccgtg tccacaatgc tgcttttaca caaggatttt cctattagtc
       61 ttccttgatg acaaattaaa aatagactga aaaagcagag aagtaaaagc tcaaacggaa
      121 agtaaagtct aaaaaaaacc tgtcttaatc tgttctcctg tggttggtca caatgctccc
      181 ctaagctgat ggtaactctc tagtctggca gataggactg aaaatgcctt gcaacctaag
      241 aggtactaaa acttacagca cgacccctgc tctattccat aaaataccaa cgctggagta
      301 aagcaccaag atttacaata caatcacttt aagtgcccca cagccaacat caatcctaat
      361 ccttaagagg gctaaaaata aagattggag ggcagctcac aaggtagctg tgatcaaatt
      421 aggaggctga aaggacagag agggacgaag aaggaagctt ataaacatct gatccagctg
      481 actgtggcca tatggcagct gctgcccaga taaagagatt aagaatagag gagtgcgatt
      541 acagctgtct ggccaattca ggcagctcaa atctacaagt tctaaattag tcgcaaatac
      601 ccaaactcct tcaaataatt attgtcatgc cgaaataaaa ggtttcaaac gctatgtgag
      661 agaaagaaaa gaggaaacca gtcaagccat tctcctaaaa gtttcaaaat gcataagtga
      721 tctctatgtt tcagaggcac tacagctgtg tgctgctcgg gtgctgtgct gctggacatt
      781 tgactgtgaa gtttcatgaa atacttcacc acctttttag ccagaacggt cctttttcac
      841 actcatgcac attttcccaa aacccctgta aagtcattta aaagatgcag tccaagaaca
      901 caatgctgaa ttc
//
LOCUS       KCLA01002922             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47571upu ultra-conserved element locus uce-1297,
            sequence.
ACCESSION   KCLA01002922
VERSION     KCLA01002922.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47571upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-1297"
BASE COUNT          145 a          102 c           79 g          131 t
ORIGIN      
        1 atccctcatc agccaaaacc atgagggctc tgtgctcaaa taacaggaaa catattcaat
       61 tttcctaaca gaagacagtt cattaagctg tgccacatca aataaaactt taatttctcc
      121 agcatcagag tcgcaatgaa agcaattgag gaagatgagc catatggtac ttctatcagc
      181 aaacacatat tgctcattcc cccaaagttt tctaattctg ctccccagac ctgtgtaata
      241 tagataatgt gctctgagcg cagcaaccat gagctatctg gtgtacactt ctaatactgt
      301 atttaatggg aaataatgaa tcataaaagc ctgcagaaga cggcttttgc taacctaaat
      361 ctcagctgta atttcattgt tctgtgccta agatgctgtt tgcccttttc aaataacagc
      421 agttgaacat aattatgtgc tgcaaacctg ggctgca
//
LOCUS       KCLA01002923             569 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47600upu ultra-conserved element locus uce-2877,
            sequence.
ACCESSION   KCLA01002923
VERSION     KCLA01002923.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 569)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..569
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47600upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>569
                     /note="ultra-conserved element locus uce-2877"
BASE COUNT          200 a           85 c          110 g          174 t
ORIGIN      
        1 agagaaaaaa gagaaaagac ttccatcgta aagaaaatat tttcagaatg aagattgcta
       61 cttcagagct ctgggattga acagtgttgt tgtattctcc tttcctttgg ccattgctgt
      121 taactctttt tgttgttgga agtggcgaaa aatttgtgat cactatcttg cacatggtgg
      181 aagatgtctc aggaaagccg ggtttcccga ggagcaactc cacaccattt catgtatttt
      241 taaaacccaa ctcctagcac tgaagattat tataaaaaca cgagaaaaaa aaaaaagaca
      301 gtgagaaaga agaaaatacc taatctaatg tgtagcagtt acatatttac caaataatgg
      361 actcaaaaga aatagatgtt tgaagagtgc tttatatatt caaaaatcgc tttatgttta
      421 aaagaaaaaa aaatcgatgt ttttgattgt tttgaaagga agaaagacaa tggaataaca
      481 tactctctgc gtatgtttga aaaatatatg aacattgtgc tccctgcctg cttggatcag
      541 gaaacttgtg cattactttt gggttttgt
//
LOCUS       KCLA01002924             916 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47616upu ultra-conserved element locus uce-3376,
            sequence.
ACCESSION   KCLA01002924
VERSION     KCLA01002924.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 916)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..916
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47616upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>916
                     /note="ultra-conserved element locus uce-3376"
BASE COUNT          278 a          193 c          148 g          297 t
ORIGIN      
        1 gatctgcgat tgactgggat tcactaatgg attgtgaatc attcatttca aatgaatgct
       61 tttgaataaa tggagaagcc aaaatctcat ctaaatcctc ctggaataaa gaatgctgct
      121 ttaggtacat agaaacgtat tgattccact ctgccatgct aacttatagt tgtgacctca
      181 cagagagcaa cttcttattt tctacaactc tgtgaaatgc acaatgctag atttaagttg
      241 cacaagactt ttgtggtttt cagcaacacg acttagcacc catgttacaa atgtttgttt
      301 actttttcta tttaacttag ttatctcatt tcctcatgca gttaagtcat agcatgcact
      361 gtatgcttat ttcctctcct agttaatttg tatctttaga aaaaagctat aggaaggtat
      421 taatctgctt aacatttcta agtacatcat ccaagggatt ttgttttttt aatcttacat
      481 atgctcagca gagttactgg caaaaactgt acattttctc catttcatcc tttcaacatc
      541 aaatggtaag cagcaaaaat tggatcagac ttcaaagact atgctgtgct ccaagtcaca
      601 gagcgactcc tccatttcac atattgaatt cgagcaggat atcaaagtgc taccaaagaa
      661 cctcaggtcc ttactaaaaa agagtctcta acatctgtag aaagtgaagt gcacagacaa
      721 atcacctcag ggagcagcta gcatttattc tcagcagcaa atttccagcc ttttgattct
      781 cttattcact gtacctccct gtctttctac agaactaaag ttcttagcaa gcaggctttt
      841 gtctcaaaga cttcaaaaca tcactaacgg tttcatgttc agatggcttt gccatgcagt
      901 catgaacaca ttgcag
//
LOCUS       KCLA01002925             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47631upu ultra-conserved element locus uce-5964,
            sequence.
ACCESSION   KCLA01002925
VERSION     KCLA01002925.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47631upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-5964"
BASE COUNT          180 a          167 c          161 g          206 t
ORIGIN      
        1 tggacacagt gttatttact attttagaaa acaatagaga cctcggtgaa aatggggcaa
       61 cccgggaggg ttaagccaac tcagtgaagt gggggggctg caggtaccag ttggtaggcc
      121 ctctgtgaac atctaggatg tccttcaccc cctcctcggg tttctgtccc atcaccttca
      181 agtctttgcg ccttgtgcca agtgtttaga aatgactagt agcggctaag taaattgcga
      241 gtaaacctag tgaattagga tgattctcta tcagtttaat ttatgtttta tagttagttt
      301 agccttctga tttgattgcc ttagtaatgt gaattgccta cagctgctga tgatacagct
      361 ttaattctgt tttaaaggtc atgtaaacat gtgcctgtag cataaggaat gcaaattcaa
      421 ttccctttta atgcttcctc gcattcactt cacagccttc acctcgaaaa ttagcaggat
      481 ttaatagaaa accgcttcaa tgttgtgatt tcattaaaag ccccttcccc acccgggcgg
      541 ggctttcctt gggccccctc cccaagcccg ttttggggaa gatcaaggca gtgggagtca
      601 acacctagaa gctctagtta gcggtaggtg gataatccga attaaccccc ccaaggagcg
      661 agaaccccgc gcaggtgtaa actttgcgct ccagctgagc cttttcctta catc
//
LOCUS       KCLA01002926             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47645upu ultra-conserved element locus uce-1038,
            sequence.
ACCESSION   KCLA01002926
VERSION     KCLA01002926.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47645upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-1038"
BASE COUNT          256 a          148 c          131 g          242 t
ORIGIN      
        1 aaaaagaaaa aaagagggaa gaaaagatcc tttgctcatt gcccaggtga gatagcctgg
       61 tgcgtcctct cagcctcgac acgcgtcaag taaaagaaag gttaaaatta gaaaattcaa
      121 tttatttgat aatttcccag aataattaga gttaatatgg gttaattaat atgcaaatct
      181 ctcagcagat gttctgcagc agggcctgtg tgagaaaaca gcctttgctt tctcctacgt
      241 gattttggct gtcagttatt gggtataatt actgtaacta accgaataca cacaaaacct
      301 ttggaatata aaattgttac agttctagtt ctgcacaagc tgctactttt ctgcaataaa
      361 agcgaacaat ttctttcaga aaataggagc ctttttgttc ctttcttgat ttaaaaagaa
      421 gaaatgaatc aagtaaatgg cttatctttt ttctatgcat aattaggtca gtattatatg
      481 aacattccaa tgagcagtgg tacaaacgta catataaaat gatagctcaa accacctgca
      541 aaatcacata aaattgtttt attcagaatc tttttcttca taccagaact ttgaaacgct
      601 ccgtgtcttt cctgccaacg ttgccaacat tcacccgatt caaagggatc ccgtaacttt
      661 tatttttttt taaaagcaca acagcaacat tttcttcaaa ggcacccgag cctttaggac
      721 tgataaaaca aatcagcctt tgaaaggtag accggtgctg tgcttaactt cttttat
//
LOCUS       KCLA01002927             587 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47661upu ultra-conserved element locus uce-469,
            sequence.
ACCESSION   KCLA01002927
VERSION     KCLA01002927.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 587)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..587
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47661upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>587
                     /note="ultra-conserved element locus uce-469"
BASE COUNT          194 a          110 c          133 g          150 t
ORIGIN      
        1 tatctgccta aggaaacaag atgagactaa atggaggaag tcctgcacat gccataaatt
       61 ccaaagatgt gctacttagc aaagaatgaa agctgtaaac agcaacagtt aattaggcca
      121 ctgtgctgct gtttgcaagt gggaagtagc cacaaccaga aacaagatgg ctgctcagca
      181 gtgccctgct gcagcccaaa gatcgtctcc tcagctctgc aagggcttat gggttagggg
      241 gaaatcatac acagatgact aattttttta tggttcacag ccgatcaaag tgaaattcag
      301 cagctgttca ggacaagtga ccactctaac ggctgtaata taacctgcta aatagagagg
      361 gaattgcatg agagcaagag gttagctgtg attatcggca ggtgagtgct ttattgaagt
      421 tgaaagacca ttaacattga tggagtaatt atttcaactt gaaagtaatt accttgatgg
      481 gtgataactt ctccagcgtt cccagagttg attggaccaa acaattgtga actcttgaag
      541 cctagaaaaa tattacaaca atactgcaat gtttaaatta ctgaaac
//
LOCUS       KCLA01002928             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47677upu ultra-conserved element locus uce-14,
            sequence.
ACCESSION   KCLA01002928
VERSION     KCLA01002928.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47677upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-14"
BASE COUNT          254 a          159 c          180 g          234 t
ORIGIN      
        1 gttttcttct gcagagttat cagattttga aaagagagct ttctcctctt gtgaggtcca
       61 ggtaaaagtt cacccattcc ctggctgctt gcttctgaca aacaaaaatt aaggacctga
      121 aaataactat tttatctgaa aaaatgctaa acatctcaaa acaaacattc ggctgtgcca
      181 ctgccaaatt ccacaagtaa gagagctgca ggccgagaca gctcatgtct cgctggggaa
      241 taacgggtaa agtttggcca gctgcccctt ccaacccttc agggacccac aatccaattg
      301 cagtgtctta gcggatgtga atttcaaggt tacacctggg tgttcaaggg cagggccaag
      361 tgtaatcggc acttagatca tagattaatc ttatttgcca tctattaggt ttgattcctg
      421 cttcccgctc tccctcccta aagccaggat tattgtgata gtttaagata atggattcta
      481 acggaagaaa ggtcacgcag gcattgagat ttggaacctt aagataatat gattaatcta
      541 aaagcttctt tctaaaaggg gaggggatac tctcatacgt ttaattgagg ggagagagcg
      601 agagagaggg agggaaggat ggaattagca acatgaaagg aggagtgaag gatcctactt
      661 tttgtcaact gcaattaatt aacatagtaa ggaaacgccg ttcattttca aactgataaa
      721 ccagactttt attaccttaa agtgatgatt atttattttt tagatcttta gtggagatca
      781 tgaattacct ataaacaccc ggattgattc tcagggacac atacatg
//
LOCUS       KCLA01002929             707 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47691upu ultra-conserved element locus uce-4438,
            sequence.
ACCESSION   KCLA01002929
VERSION     KCLA01002929.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 707)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..707
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47691upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>707
                     /note="ultra-conserved element locus uce-4438"
BASE COUNT          222 a          142 c          135 g          208 t
ORIGIN      
        1 aaaatattac tattacattg ctatcaacct gagataaaaa aggaagggca taagaaaaga
       61 aacaaactgt gccaaaccca gtgcctttgc gagcaaagtt tcaaacgttc tcaaaattta
      121 cttcagcaat cagcttacaa gtcaaaacgt gctgcaagtt gtgttttgtc tcaagctgcc
      181 aattgttagt cgagatgact cttcatttta taggagtgtt aagaatgcaa atggttaaca
      241 gtagtataaa ctatatactt ggttttagtc tgaacatcta aaactattac acagtgcatt
      301 catctgcatt ccctgtttat gggaatgaaa tatgtagtca tttgaagtcc acaatatgta
      361 tactgtgttt gtaataactg cagattttac aagcacatta ttctttccat taggattaaa
      421 acctcaccaa acagcaattt gtgaaagaat tctagcaggg ccctgagccc agaactctga
      481 cctctgatga gatgcttggc agcaacaaac tctaggtcta agcaaaacat ctggtttgag
      541 ttaaacttcc tgaaaaaata gtccctgtac tggggagact ggtattcact cagctttgtc
      601 tatatacttt gactgacttc aacgctgttg cgggggcgct gccagaacac atgtcaatca
      661 ctggagactt cttggtggcc tccaaagtgc tcagcacttc cattagg
//
LOCUS       KCLA01002930             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47705upu ultra-conserved element locus uce-2036,
            sequence.
ACCESSION   KCLA01002930
VERSION     KCLA01002930.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47705upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-2036"
BASE COUNT          189 a          143 c           97 g          153 t
ORIGIN      
        1 aaaaaaaagg cagaaggcct ctctagccac ctaatcacca tatcaatggc acatgccaca
       61 acagagaaac actagtttat ttgattgatc atggtagata aactccaaat aacagagaaa
      121 ttaacaaatg cttgacattt gctcaacatc cattattctg acactgcttt caggatttca
      181 aagcctggga gtatgcttaa tcaacattca tattccccag tgagctacag gcaccatatt
      241 gcgccccgcc ttagtactga tgaaaactgc atattggcca tttccaaaat gttctgggac
      301 tccacacagg gccccttctc tcccttgttc ctgttctgca gttttctttt aaacacttcc
      361 aagacaaaag catctgccag tttttctctc tagggatgta tgcaaaatga acttaacagt
      421 tttaaggcag gagaaaccct cacatctaaa ttcattcata ggacagaaaa gggcctaaga
      481 ggcctctcca gggacaaaac catgctgaaa ttttccccga caacagtggg agctttataa
      541 aatctaaatc cagacaattt ccaattcaaa tgcccagcat ag
//
LOCUS       KCLA01002931             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47720upu ultra-conserved element locus uce-6074,
            sequence.
ACCESSION   KCLA01002931
VERSION     KCLA01002931.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47720upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-6074"
BASE COUNT          231 a          188 c          196 g          245 t
ORIGIN      
        1 ccactctggg ggaaagttta ttttgagctg tgccgacgac aagactctcc gtgtctggga
       61 cttcaagaac aagcgatgca tgaaaaccct caacgcgcac gaacactttg ttacctcttt
      121 gggtaggtat cgctctgcgc gggcactgac gctcagcgag agcggaaggc tccccagtgc
      181 cgccgtggct cttaacgcaa gcctctcttc ccccgcagat ttccacaaga cggcaccgta
      241 cgtggtgact ggaagcgtag atcaaacagt aaaagtgtgg gagtgccgct gatggattca
      301 cttctgaccc ctctttcctc tggatgcact cagataccat ggttacccat tgagctctgt
      361 ttaaataaat attgtccttt catgtaaatt attctggatg tagattgagc ttattaaatg
      421 ttacacacaa agtattcatg catggtgaat ccaaattgta tactgtaaat ttacatacgt
      481 tgtctagaag taccataggt ttaagaacat gggctggcat tggtcacgtc agaccggaga
      541 aggcagaagg tggccaaccg gaatagggca cttaactgaa tagttgacag tgtcgttcta
      601 tgtcagataa ttatacctgt ttttctttct gctgtctgtt ggtgcctgaa ttggtgacct
      661 catttgggaa agttttgtag ggctctttca gaaatgtgta tctatgtaac atcacttaag
      721 tgtgcttaat aaatcttctc taagaatact agatgataag gctgcaattc agaatcttct
      781 gaaccttatg tgtaattaat ggaaattaac cagactctgg aacctctgtc acgagacgtt
      841 gccaaaccaa cagagtacac
//
LOCUS       KCLA01002932             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47736upu ultra-conserved element locus uce-8033,
            sequence.
ACCESSION   KCLA01002932
VERSION     KCLA01002932.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47736upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-8033"
BASE COUNT          260 a          149 c          137 g          223 t
ORIGIN      
        1 caaggtatgc atgaaatgca atgaaaaatc gtacaggggc atagacaaac ttccatttcc
       61 caagcatttt attgtaaaag aaatcactgt aggaatagaa gacttctaaa cttacaaaaa
      121 taactcagtg ttgccctttt aaattgtttc cactgacaac cgaagtcata gtggcatttg
      181 ttcatccaga tcccagtaca cacatgtatt cataatgata catcccccga atggcacagt
      241 tcttctgtgg ttgctacctg tcaacgcttg tactcaagaa ccttgaatat cagtgactca
      301 ctaatgtttt atgatatttt acctcacttt atggtagtca tttatgacaa gaccagaatg
      361 acataaactg ccataaagca aagcaatgca atcacacaaa tgaccataaa tcaaggtagc
      421 aacagaaaaa ggtcataaaa ggaaagaaaa ttggagaaaa caacatttga gttcagattc
      481 agaagtctag agttaacagc actaaacttc aggacagatg gatgtgagca gcaagtacat
      541 tcagtgttcc actggtacta atcatttggg gggtgtggat gcactgacag attaatgcat
      601 aggtggactt tcattacttc taagcccatt atgatggaca aagtgcttat tgcatctctg
      661 tgcatgagct tttttccttt ctcaaagtta tcttgtcata taccctgagt aattcccact
      721 tcagacaaat ttttgaataa ctttatagta atgcaaatgc atctctgag
//
LOCUS       KCLA01002933             563 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47751upu ultra-conserved element locus uce-3326,
            sequence.
ACCESSION   KCLA01002933
VERSION     KCLA01002933.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 563)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..563
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47751upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>563
                     /note="ultra-conserved element locus uce-3326"
BASE COUNT          183 a          107 c           89 g          184 t
ORIGIN      
        1 agttttaagt tcctttccta ttttaaaata gttaattaaa aatgactgtt agggcttctt
       61 ataaaggaac ctgcataaag aagagaggca agcgtgcatt gttaactatt ccgtgacagc
      121 agaaggggat ctctttaatg caatagtgct ctaatatttt accattcctg atgatgcagc
      181 ttctatccag tgagactttc cctaaaatat acagttgttt tgacacaaac agcttgctgc
      241 acttaaggat tttactaata aaacataatg ttgtgttaga tattatgact gttgccacag
      301 ctgaactgac ttgtcaaatc aatcctaata tggctcccac aggcacataa aaaccttatt
      361 tagctatcag ttatcctaat cactttgttc agtttaaggg tgcaatgctt caagaccagt
      421 tcctatttat acatatatgc ccagccattt aataaagtcc tgatttatat aataaattct
      481 tgctggaaaa aatactttaa agcagcagca ttttatcaag tgtgttgcat ctcatcacac
      541 ccccaaacaa agatgttaac gta
//
LOCUS       KCLA01002934             293 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47765upu ultra-conserved element locus uce-5031,
            sequence.
ACCESSION   KCLA01002934
VERSION     KCLA01002934.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 293)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..293
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47765upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>293
                     /note="ultra-conserved element locus uce-5031"
BASE COUNT          102 a           61 c           48 g           82 t
ORIGIN      
        1 aatgattaca cgaacaccca gggtcctgtg gacacctgag acgcccggcg tcctgagcag
       61 tgcagcttga agagctcact agtcaataaa ataaaatacc cattctcttt aattaacata
      121 tgaaataaac acaatctgtg acacctagtg tgcagcagca attaagaggc attgcttagt
      181 taaacctcct aatacctcat ttaaatatgc aattaaggga taattgcctt caatcaataa
      241 aaaattgaaa tattttgcag agacctcaat tatttttgtg aagctttcaa ctt
//
LOCUS       KCLA01002935            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47781upu ultra-conserved element locus uce-5313,
            sequence.
ACCESSION   KCLA01002935
VERSION     KCLA01002935.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47781upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-5313"
BASE COUNT          297 a          151 c          221 g          336 t
ORIGIN      
        1 gtcttgaagc aaatctatgt tttcataatt tagctggtac ttactttctc agatttaact
       61 gattcatatt tcttagaaga tgcctataac aaactggatc catcaatagg taactaatgt
      121 aaagcattat tgaactaatt tgtgagaagt ttaattgcag tttgcttctc tgtttttctt
      181 ggcagctgtt gaaaataatg tggtagaatt ggatttatgc tgacttttag aagcagatat
      241 ttgttcaaaa gtagttgggg agtgcaaaga accatgccaa tattcagaat tcatatttcc
      301 cttggatgga aggttgtgat aaaatggtac atggtgtgtt ttcattgcct gttgaaagac
      361 tttcatgcag ttaaaataag cattttgatg gtggttgaat taagagtttt tgtcagtctc
      421 ttctcatcat ggatgattag actaaaacgt ctgcttgtct tgacttgaga tcaccacagc
      481 ttcagataac atgctttgtg attgaaggtc gaaatatttt gaattctaat aggctgccag
      541 atgaattgct tgaaatagac tgtaaaattt caaggcttcc ttttccatct gctgtgaaaa
      601 gaaccattgg gaatggttga gcttgatgat catagaatta cgggatggtg attctaaaac
      661 cctcaaaggg aagttgctat ggagatgtag ttccaaactg tgaaatgatt cacctctgaa
      721 aggcttcagg gtctgagaag ctgaacacat cattgttcag gtggtcattg gttaggaaat
      781 tgctggtgcc tgtgtaatca gcactcctgt ggtagttaac gatctaaaaa ggtttgttct
      841 gaatgatgtg ggacaacagc aatgtgcata agatggcttc tctcaatcat agtttgctca
      901 gcctggtgct tgtaaaaata cagcgagcta aatggcagag aaaagaactg cttcattgag
      961 gaagtctttt aaaaacaaaa tcttttctgt gatggatttg acatc
//
LOCUS       KCLA01002936             664 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47796upu ultra-conserved element locus uce-326,
            sequence.
ACCESSION   KCLA01002936
VERSION     KCLA01002936.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 664)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..664
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47796upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>664
                     /note="ultra-conserved element locus uce-326"
BASE COUNT          253 a           96 c          112 g          203 t
ORIGIN      
        1 gcttgcatga cacatataaa ttgtgcatag agcttggaag caattaattt aaagtaataa
       61 tttgtataaa catcctaaca aaattttaaa gggtattaaa caccctgttt tataaacata
      121 acacttaatt tgaacattta gaaggtaaca catttaggat aagtgcacaa cacatgaaaa
      181 taataaatga aattttccca gtttagaaaa tgaatgtaat taattaacat ttaaattaca
      241 tttttaattg caatcatgcc ctcccagggg actcataagg gaccataatt gcaattaaaa
      301 gcatgtggat tagataataa aacaatgcac actgtctgaa atgtgcgatt taaaatggaa
      361 agcagacatt gttatcggca catctaactt aattgtagcc ataaagcaaa tgtgctgtac
      421 aaaataaaat tcacatacgg gaacatttaa ttcttgaatc tcttaaaggg gacacgcttg
      481 agagcacatt ttatgacagg ttctgtttga aacggccctt taaggcttta gtattcaggg
      541 atggcgcttt aatgtttttg cattaataaa agcatagctg aatgttccta ttaaaataca
      601 cagatacatt taagtaagag atgaaactga gtgtctaaaa tttaagttgc aggaggcata
      661 atta
//
LOCUS       KCLA01002937             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47810upu ultra-conserved element locus uce-5681,
            sequence.
ACCESSION   KCLA01002937
VERSION     KCLA01002937.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47810upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-5681"
BASE COUNT          257 a          173 c          146 g          250 t
ORIGIN      
        1 aacaaaagat ccagggagca aaagcacata ttttgcctaa aagacagtcc ttcagtatgc
       61 ttctgtgagg tcatggggca gaaaaaaacg ggaacaaaaa ccctaaaaat gtgacacacc
      121 ctcactcaga ccttgtatag cacatgccta aggctgtaca cactattgag tccttttttg
      181 gcagacaggc tgagcagagg gatttccttt gccattgagc tacttatgat ttgctcttca
      241 gcggtaggag tcaggattgg gaaagtttat tattcaacca actctaccaa agcaaggaaa
      301 acactgttta tagaaaactt caaaagcctc tgtcacagat accaagtcta tatactgtat
      361 gcctttgcca agtcaaatta ggttatttta cttgatatta agtttgacaa gcaaagagcc
      421 tgtgaaaacc agaatccaac tgggcgtgtc tcccacaact cagtcttttt gtgctaaaat
      481 ttctacagca gccttattcc atactctcag tttatagtct tgcctgttgc ctagaaattt
      541 acctcattgt gtcctagaca tcttctaata ttcagatcct tcaagaatat gaatataagt
      601 agattttgct ttggctagca aaccagtctt actgcatgtg aatgtctcta tgggctttag
      661 tttctattta ccttaacaga ttacaaattc tattatcacg ctaatttaca ggtccactga
      721 gtacatcagg aatgtgggat cttcagtcct ataaaaatat acttcttcta cagtggtttc
      781 tggcagagac aatgacaatt tgtgcattaa caaccatata caatca
//
LOCUS       KCLA01002938            1092 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47825upu ultra-conserved element locus uce-5713,
            sequence.
ACCESSION   KCLA01002938
VERSION     KCLA01002938.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1092)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1092
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47825upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1092
                     /note="ultra-conserved element locus uce-5713"
BASE COUNT          207 a          312 c          282 g          291 t
ORIGIN      
        1 gcacccacgt ttggggccaa tcctgcttat tctccatcac aaagcaattc tccccgtgct
       61 ctgtcttgta gcttgctgct ctctcctgtc accatatgca tttctgcatg gagccggagc
      121 ttcttggtgc tggggcatcc ctggggtgag ctctctgctc agcaccacct ccccgatggt
      181 gtgttgatga gtggtggtca cagcgagtgg ggaaggggca gggagcgatg gcttggctgt
      241 gtcctgcagt ccattcccta cctgggcagg gcaaagctgg cagcttcaca cccttccatg
      301 ctgctggtgc tggcaacaag aagggtctga gggctgtggt ccctgttgtg agctgtcagt
      361 ctctctgtct gccccggtct gtctgccttt gtgcaccttc ccgtgcaggc agcaatttct
      421 gacagccaat atttcacaga aaccggagcc agctctctcc ctccctcctt ttttcctcct
      481 ctctctctct tctgtttatg aagctgaggg taagtgttta attagttgcc taattgcctg
      541 ggtaattggt agacatactc agctctccaa gtaatcagtc tgaacaggcc ttgaaaatat
      601 ctggcccaat attcattagc acagttaaat cgttaaacag ttactgtgtt tggttcccga
      661 caaaaccccg ccatcggctg cggtggcagc tctccagggt gggggtggag accccacacc
      721 cagcgaaaac agcttcagct gctctggagg ggatggggag ggaccaataa atgcaaagta
      781 aaagtcggag atctatcatc tttgcagtgg atggtgatgg gaaaagacgc ttctcttcac
      841 tgcttgtcct cttgctccag cctttccttt ccccatacca gcagctgatt cgccctgcat
      901 gcaggcggct gcccctctcc ctcccttggc cactgtgggt ttggaagctg gttttgccat
      961 tagcctgagc atcaatgtga gtatcgttct ggcgggctgc cctgaccaga ataactcatt
     1021 agaaggacct tggctggtcc tgctccggct cggtactaca gcacactctg ccaagtgctg
     1081 ccaacccagc gc
//
LOCUS       KCLA01002939             246 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47840upu ultra-conserved element locus uce-1044,
            sequence.
ACCESSION   KCLA01002939
VERSION     KCLA01002939.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 246)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 246)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..246
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47840upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>246
                     /note="ultra-conserved element locus uce-1044"
BASE COUNT           70 a           38 c           45 g           93 t
ORIGIN      
        1 tgtaatatac cctgagttaa tttagacagt gggttagtcc cctcaacaaa actgtggccc
       61 atatacaagt caaatctgct tttttccttg ggcaatgatt tatttccctc ttaaattggc
      121 tggaccagtt agttttttat ttttattaag tcacactatt cttaaatgaa actattgatt
      181 taaagtcagc ttagtgagga tttaatttgt tttcagggga ttagagcagg taacatggga
      241 taattt
//
LOCUS       KCLA01002940             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47856upu ultra-conserved element locus uce-3664,
            sequence.
ACCESSION   KCLA01002940
VERSION     KCLA01002940.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47856upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-3664"
BASE COUNT          201 a          131 c          135 g          185 t
ORIGIN      
        1 aacccacggc actgtgtttg gctagagtcc catcagtcac caccatgtgc ggcaagtaca
       61 aaaaggaccc cctaaagaca gccattttga tatgctcctt aagatccaga ggctgctgaa
      121 agaacaattg gataaagttg aggattgggg aagcttgatt ttcttgttcc actgaaataa
      181 aaatcccctc cttttttttc cccttttccc cttaaaagct agtctgcaag ggggttgtag
      241 ctgtgtcaaa gctgttggga tgccactgct gatcacttta attactacga ctaaggagga
      301 taaaattaaa agtagcacca ttgaagcagt ggaaaaaagc ttgcagagat gtcgctgaac
      361 tgtgaaatat aaaaattgca taccaacata tttttgtagg agggaatcaa ggaattacac
      421 tacttattct tcgagagttt gtccttaaat gggaaagccc tgatcatcca cccagcagat
      481 ctttagacca tcacaaagta atcagggaaa aataaccaag caaactttaa tgtctgtcag
      541 agagtgaaag atttcactga gttttcgttt aactgtacag aaaagaaaag cccaatcact
      601 aggtttttat ggtgctttct tggtgcagaa cttctccttg ttctgtggtc tt
//
LOCUS       KCLA01002941            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47870upu ultra-conserved element locus uce-5092,
            sequence.
ACCESSION   KCLA01002941
VERSION     KCLA01002941.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47870upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-5092"
BASE COUNT          306 a          205 c          202 g          331 t
ORIGIN      
        1 aatgggcagt gctttgaatt gctgagaact ttgagatatc ttttctttgt ctctccttgg
       61 agtttctcca tgtgctgtaa cttctctatg catggaaagt atagttagtg ttttcatttg
      121 ctacctaagt agcaaattac cctgtaaaca gcccacaaga gctggtctgt aattgaattt
      181 taactgttga ctttagacat ttggtatatt tgctgcaaga agtaaatttt caaaacttca
      241 tcttgatgca gtcagacaaa atgaaaggta atattcttta tctgccacag attgctgcag
      301 atgaactgct ttcatatgag cttaaataag atttagtgta ttccatcctt cagctggcca
      361 caattgaaag tgatcaggat caatatagct gccgctgaat gcagcccagt attgtgcatt
      421 acaatagagg aaatggctgt attcaaaatt ttcctctgtc aaattaattt ccatgttatc
      481 cccaaattca attagatggg aaccccgtgt aactaaaaaa gtgtccaaca tcccttagtg
      541 acaaattacg gtgcttagtg tgcatatcaa ggtgaagtgt tgagccttgc taatcttctc
      601 actaattctc aattaccgta aaatgaagcc ataaatcaca cagacagggg atcgatggaa
      661 atgctgtttt cagggtgatt ggcagcctcc ccaaaggttt tctgtaagtt ggtttaaggt
      721 taccattctc taaggggagg gatgaggtag tcttgctcaa tctctatgat ataggcccac
      781 aggccttttg gggatagtgg ggagggacag caccaatttc agcccatcag acatccaatt
      841 tttctccttt tcatacctgc tgtagtaaat gagaaacaaa ttaaatttca ctccactatc
      901 tccacagaaa ccatttaaat ttttcatgga aactaaattg tccctagaca aatagccccc
      961 tgattctatg aaaatatact ggagcgctgg ggacagaaat aaatttgtgt cactctggat
     1021 atgccattct ctgtaatgtc attc
//
LOCUS       KCLA01002942             736 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47901upu ultra-conserved element locus uce-2149,
            sequence.
ACCESSION   KCLA01002942
VERSION     KCLA01002942.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 736)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..736
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47901upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>736
                     /note="ultra-conserved element locus uce-2149"
BASE COUNT          222 a          145 c          131 g          238 t
ORIGIN      
        1 tctctctctc tctctctctc tctccatctg cgtaaaagaa agagagtaaa taaaattcca
       61 gcagctacaa accagcaaca ttatactgtc ataatccaga aatgaacatt gattctgaag
      121 aagtcgcttc ttcaaacttt aacgcaacaa ttaagtattc cattgtcatg gctcaattaa
      181 atggtatggc ctgagaaaat tggggattgt aaagtgagga tggaatgtgc tttgatcctc
      241 tttccagggt tattgtttca ttaataaatg aacatgtcat ttgtctcacc agagggagct
      301 cctgccctcc aggctttttc ccttttttgt tcaggtttta taaagatgaa tttccagtgc
      361 tctgaaatac catggattag tagttaagcc tgacagcact tcggggagta gtgggcttaa
      421 agtgcctcac acaggtctcc aaagcacttg tttactaata gaggaaatca gcgaccgtct
      481 gcagctgctg atatcgcatt accatttgga aagacagtag ctgagataac aaatcacaca
      541 gttttaataa ttactcctgc attccagttt tttgtttcct gcgtaactgc aaaggctgga
      601 tttcttccaa ataaacagat aaaaacagta tggaactttt atcttttaat gataatgaca
      661 acacatcatg tttcactaaa agtttcctgc tggatttttt tctgatttct agagtttcaa
      721 taaaatgtaa ttatac
//
LOCUS       KCLA01002943             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47917upu ultra-conserved element locus uce-395,
            sequence.
ACCESSION   KCLA01002943
VERSION     KCLA01002943.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47917upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-395"
BASE COUNT          210 a          154 c          174 g          249 t
ORIGIN      
        1 cacgccactg tggagccggc gcctctgctc ctgcacaact cccccagaat cactcttttc
       61 aaacattttt attctgatct tatttttaac ctggggggta aaacctttaa atcagaggca
      121 attttgtttt cctagctgtc agcaatattt tggctatttt aagaatgtag gacagggtta
      181 aggattagta ccagcatttc ttttctgtgt atcagagctg cttagcagta attaattagg
      241 acattgggtt ttgtactctt ggttcaggtc atttgcctat gagcagctca agccctttac
      301 aaaggcacac tgcatatgtt tctgggtacc tttttgagag aagatttaaa ttggccagat
      361 gaataatact ttgctacaag tgttttgccc taggcaaaaa aggttttctt catattatca
      421 tcgcctggag ctggaatcct caagcttgat gtgactggtg ttatactgtc acatggcaat
      481 gatgtaagaa caggagctct ctgtgtcaga caaatctgga tttaggggaa ttatagcaga
      541 tgttgcaaaa tggcaacagt ttagtgagtt cctttcatcc cgctgttggg aggcaggtcc
      601 acaaagtacc cccagacaga gaagaatgtt atctttgatc cctttcactc cagggcaagg
      661 aggctccacc gaacgagggg aggctggaaa tactaataaa tgtacagtag ctgtttgttt
      721 tgcaatatgg aaatgggcca ttatttattc atgctgtttg cccagacatg tataaaagat
      781 ttttatc
//
LOCUS       KCLA01002944             702 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47933upu ultra-conserved element locus uce-3018,
            sequence.
ACCESSION   KCLA01002944
VERSION     KCLA01002944.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 702)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..702
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47933upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>702
                     /note="ultra-conserved element locus uce-3018"
BASE COUNT          204 a          126 c          122 g          250 t
ORIGIN      
        1 caatttacgg tggctatttt aaaggtaaga ggaaacatgt ctctgcagat tctttattca
       61 gttctgagct aagcaagtca tgattcccaa gctccttaat gaaaagaggt ctacttatag
      121 atcacctttt gcatgaaact aatgttgcat gagaattcct tttacgtgca tgactttcag
      181 ataatttatt ttatttgggt aatatttaac tttaactgac aattaattaa ggctaacgtt
      241 atcgattaaa tgtggctttc agcatggagg ttaggcaact ttattcatga ataaactcct
      301 atcttcctgc ctaaaactgt caacatattc ttttgtttat agagaatgtg gtcttttgca
      361 aaatgaaaag gtaagagaca aaagctcagt aacacaaatt caaactctgt tcccttgtac
      421 cctccctagt aaatctatag acaactgata cgtccatttg tagatgggga tctgtgttgc
      481 ttggagaaat gaagaattct gtgtctgacc tttttgaggg ttaatggctt attctgagag
      541 aacaactggc gcaaatccca gctctaaaca gttactactt cttttgttca catccctttc
      601 ctccccttcc ctgtttgagg tttgtacact tagtgtttgt accttttgac tttgtttaga
      661 tgccacatga gttattttta tttataataa aataaaatgt ac
//
LOCUS       KCLA01002945             909 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47947upu ultra-conserved element locus uce-1051,
            sequence.
ACCESSION   KCLA01002945
VERSION     KCLA01002945.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 909)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..909
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47947upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>909
                     /note="ultra-conserved element locus uce-1051"
BASE COUNT          293 a          155 c          197 g          264 t
ORIGIN      
        1 ctcacctcag acttgtgagg cagcataaaa agagctcacc caccaggtgg cattttcttc
       61 catgtccagc cttaattcta acatgactgg tttgtatgta taattataaa accaagggct
      121 actaaagtgc acctgtagag cagcaacttg actgttctcg attctgttct aattattgag
      181 ccttagagca aaaactaggt ttcaaagaaa actttctgta caggcctcag tagagttaaa
      241 ggaggaacat tttaagttga tgagctgaca cttgtagaag caaatatatt aaataaatca
      301 tgattcgttt tggggctaaa tctgacttac atcaactttg gaaaaactag atcctaatga
      361 gtgacagttt ggtgttttct gtcacttcct acagtaatgg ccccaagctg acaccgctct
      421 gtgggagtct aatacttctg aacaaaagtt tttttggagt gagatagaca aggtagaaat
      481 cccaaggtga ctggaaggaa tgtctaatga ctggaaagac atatttactg gcagactgta
      541 tgtaagctgt gacagttgac agggcttgat tgtaataaat atagttgatg aagaggaggc
      601 tgacaggtga ggacagagag agaaaaagag tcaaaagatc tgcattggct gaaccctatt
      661 aatggtaagt tggtaacaaa gcccagagtc ataaaagaaa acaggtatcg caaactgatg
      721 tctaaacact gaaatgtgta ggacttgcag gttgctgtaa caagctcaga tttgctgacc
      781 tttcttctag cttttttata agtggtgttt tcagttaaaa ttcacatcag cagcaggcag
      841 gcacctgata tttttaaata ttgtgtatga ttaataaacc ctgatcaagg tcataattat
      901 tgcttcaat
//
LOCUS       KCLA01002946             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47963upu ultra-conserved element locus uce-4280,
            sequence.
ACCESSION   KCLA01002946
VERSION     KCLA01002946.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47963upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-4280"
BASE COUNT          177 a          116 c          109 g          182 t
ORIGIN      
        1 tctagtgtac aacaataaaa ttttccattc tcaattatta aaatctactt aagcagcaat
       61 tcataaccat tatggaccac ttctgagagc atgttcatga cttcaatgtt caaggaaatg
      121 tagccaataa aatctaaggc atcactgaag cccttttatt gttagggcag ctgcccctgt
      181 tttgatttag agttattgtt cagtgtagct gagagagtga attgagaccc tgacagtgtg
      241 ggagcctgcc ttggagacag agatatcaag tgagctattt gagctggtta tcaattgtta
      301 attgtctctt gatccttaaa ctagatacct aaactgaaaa gaccactatc accaacagat
      361 gcaaattata tggatcctgt aggtgtgcag gccctacaag agaaacagga tactaaattt
      421 tttattgcct cttttcatat ctcagcattc ccctagcata ggcctccaac cccactattg
      481 ctttaagttc tcttgtaact agaaggtaac acttgaattg taacttcatt aatagttgcg
      541 tgttacagat cacagaattt ttgaggctgg aaaagccctc tgag
//
LOCUS       KCLA01002947             673 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47979upu ultra-conserved element locus uce-5903,
            sequence.
ACCESSION   KCLA01002947
VERSION     KCLA01002947.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 673)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..673
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47979upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>673
                     /note="ultra-conserved element locus uce-5903"
BASE COUNT          187 a          144 c          132 g          210 t
ORIGIN      
        1 gaaaagattt aatgattttc cttctgactg tcctaaaaag caactggaat atgcagaggg
       61 aaaacctgct agcacagagc acacatgatt ctgggcatct acgtagttag cagagggagg
      121 atgttcaatt agtctcttta ccacaagctc cccggttagt ctccctctgg aaaataggtg
      181 agaaattctt atattcctct caatatgtta atcagacaac tggtatcaca gttctctaac
      241 agtgtaatac cagtccccct tggcagatat attttatttg gataatgatg tgaaatttaa
      301 gatctacgtt tcaattgtag agagccatag gcagttgtca attttagtga cagacatgaa
      361 cctggagcta aattcctgtg cacaagcaaa aattccaaca ggcgtagagc aattctggtc
      421 ccttaataga aacacatttt ctcccatcga gggcaggatt tttaaactgt gagttgcttc
      481 tcctggtgct gccaaatcac aaacgttctc acatgctttt tatttggatg gtgtggtgac
      541 ctcagctagc gagcagcctg ctgcaaaatt taacggtttt tctgcctcca gtgctcattg
      601 cttcggtacc gaagctctat tgtatgactc tcctgctttt ctttcctcta tataatttcc
      661 tatagagtca taa
//
LOCUS       KCLA01002948            1071 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 47995upu ultra-conserved element locus uce-4673,
            sequence.
ACCESSION   KCLA01002948
VERSION     KCLA01002948.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1071)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1071)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1071
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="47995upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1071
                     /note="ultra-conserved element locus uce-4673"
BASE COUNT          283 a          240 c          221 g          327 t
ORIGIN      
        1 agagtgtgtg tggaaggatg gggaatagag ccgtgccatg ccatgttctc caacgcaatg
       61 ggaaccaaac ttcctctcag ctttgcattt tagttattcc cttgaaaaac ctcttcgtgt
      121 gtgctatgta ccagcaaacc ccctttttac tgccattaaa aaggtagctg aggcacccat
      181 tatatttttt ttgttattct ttgtacagaa ctcagcagag aaagcagggc cccggataaa
      241 aggtgtgtcc tttctagtaa agcacaaaaa aatcttaatc ttaggtccag aagcagtaga
      301 ttgccacaaa cattcggcag ctaaaatcat taatctttgc tgcttgccca actggtacta
      361 gtagtaaaga agataataca ctagcagaat cagtgaccca ctacaaattg gtcctgaaag
      421 gtccaccagc ctaaatagac ttttgctgat ccaacacttg ttaggaatcc caacaaagag
      481 actattggct catctgatga gccgctcact attgggcctt ttgcaatggc tggtgatgga
      541 tgaccatacc ctctttgagg gggaagatgc agctcctggt atggggcctt ttctcatctt
      601 aaatttgtac tcaataaatc acaggtgcag aagagacagc atcagtttca ttacacctac
      661 gtgctccagt atcaatcatg ccaacacaac gggctgcgta cagttcattt cgggaggctc
      721 tttctgttcc aataccattt ccattccgtt gtgctttagc attcctaaag tgttgagcct
      781 ccacagcaaa atgctggagg agaaggatgt gatgctctgt aattgcctct ttcgacaggg
      841 cttagctcat gtactttggt ttacaatccc tggctgttgt taaaggtaaa tcttgaatag
      901 tttggtaaat accagcaccc attctgtggt catcacgcat cacttggttt taacctcgtt
      961 ttttcctgtg actcttagca cagaccttta gtctggcttg tagcaattgc catggaatag
     1021 tccccttttg tgattatagt atcatttttc tatctggttt atgacatctg t
//
LOCUS       KCLA01002949             831 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48011upu ultra-conserved element locus uce-7321,
            sequence.
ACCESSION   KCLA01002949
VERSION     KCLA01002949.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 831)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..831
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48011upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>831
                     /note="ultra-conserved element locus uce-7321"
BASE COUNT          260 a          163 c          144 g          264 t
ORIGIN      
        1 taatagaaat gttattgtac atttgaaaac agaacaaact tcagggatta tatcaaatca
       61 attcctgcgg gatttttgtc cgctctaatc ccctattcag tctcaatctc attaacatac
      121 caggcttaat tggcatttca tccctgcatt gtgtctgcaa aatgaacaag gtgtaattat
      181 gttaaaaaga gcacttcagt agttttagtt taattcatgt cattcatccg catcagaatg
      241 aacgcagatg ttctattgca ggatacagtg agagatgagc agctttgaag ccccactttt
      301 tagtcgaaaa ctttatgtca ataaagttat ttaagtgaaa cgtaaaacac agtattttct
      361 tcttttgtct cagtcgctat acaacattaa ctttcaaaag ctggttctgc ttaatttgat
      421 ttttcatttt caaatgaaca gctgtgttta agtctaaaag ccctttgttt aagcatacag
      481 agccccagaa aaggtttgaa caaagcatct ttctgtaaac acttgattac caggaaaggc
      541 ctggctttcc gagtaatcga ggggtggctt tcctctaggc tctcttttaa agggaaaaaa
      601 attgcatcac tactcagatg tcaaacaaca aaagcaacaa atgttttact aattgcatgg
      661 gcttcttgca ttcaaggtaa atacggaaag gcaggagagg gttttccaaa tgcccatttt
      721 caagcgattt tccccccttt gccagttaga ggcataaacc cacattaatg aaaatcatat
      781 ctaatcagca tcgtatttta attgtcagct actcaaccat tttgtggcca g
//
LOCUS       KCLA01002950             961 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48027upu ultra-conserved element locus uce-6238,
            sequence.
ACCESSION   KCLA01002950
VERSION     KCLA01002950.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 961)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..961
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48027upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>961
                     /note="ultra-conserved element locus uce-6238"
BASE COUNT          240 a          200 c          186 g          335 t
ORIGIN      
        1 ttgtaaagtc ctgtgctggt ttgctttcaa agggcattgt tgacaggagg atgctgatac
       61 ctccagtgct gtggccatgc caaaccctcc gtttgtttga cttgtttgct agctatgcat
      121 tattcatggg gcattagtac aggcactgtt tatttctcca atgttaacaa gcacttaatt
      181 aattacgctg taaccttttg aatctatggg gcaactctag catctttggt tcatatttga
      241 aagtctcctt ttttcccatt tttcctcatg tctttgatgt ttcgtttctt aggcttcttg
      301 gtcaggttct ctgtggaagt cttgggattc tcctgcagtt ctcattgatg actgaaactc
      361 tgcattttaa cattagtctg gagatagttt cttccttgtg aaatatcagt tttaataaca
      421 agacaagaaa aatgccataa atctgcacta actaaataaa gctgaagtct ctgagagact
      481 gattaacatt gagacgctac acaggttttt caataattag aggatgtgct tgcatggagc
      541 caggactgct ctggccttga tgccatttcc cagggcagac agcaattatt gcagcccgca
      601 gtaaatttcc tactctgctt ccagctactg aagatctttt cagagtaaag ggctctttat
      661 tttctacact cctgtcatta gctgggatta acaacacttg ttttcttcag gtgattgaga
      721 aacaattgac agctgctttc tcctgtagta ttttcttggc acctgaggtc aaagagattg
      781 cagtcatagc cttgattata ttaacatacg agatagcagt cttggcattt tcagcaggac
      841 agctagaacc aaactgtttc cactatcttt gagctctagt gagtaacccc tactcagcat
      901 tcccaagctt tgtggcatag cttatattta tttattgttc tcagatttta atcaccttca
      961 t
//
LOCUS       KCLA01002951            1042 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48043upu ultra-conserved element locus uce-2830,
            sequence.
ACCESSION   KCLA01002951
VERSION     KCLA01002951.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1042)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1042
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48043upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1042
                     /note="ultra-conserved element locus uce-2830"
BASE COUNT          361 a          207 c          221 g          253 t
ORIGIN      
        1 aggattgaaa tctcagtttc cacagcaccc aatccaatgg gtactctctt cagccagatt
       61 gctcttttga aaatagggaa gaattaacta caatcatgca gtgccactgc aaaacaagaa
      121 atgcttcata taaggagatg tatactgaaa tgaaaaacca aaggaagata gtgccattga
      181 aaacatagca ttgtggaaaa ataatttcta aggctcaatg caccccatgt aagtcattgg
      241 agttttccat taactctcag aagaagaaaa cagacctgat atatccatat aacaaaggta
      301 atcatcaaaa ttaagcatgg ttgacatcac aaaatgtaat aactttgcat gcatgctgaa
      361 tgtgtttaga aataacacat tacaaagcac aaacacatgg gtttcagtta ggcatagtcc
      421 aatcatgata aagctatttg cctaaccttc atggaactta ctctgatagg aagtacggat
      481 ccgtttcgtt aaatctggat aaaagttaga caggccacgc atgcaaaagt tgtctttgga
      541 acatgccagt acaccagcat cagcagcagg cagaggaaag agagaaaaaa cagtctaaag
      601 tgaaaggaag tgataccata accagcatct agaacagcca aggtgaagaa atttcagcag
      661 atgcttacct tccagttggg atacagaaga agaaaaataa tcaaaaaaat aaaggatgtg
      721 ggatggatgg tgagaaagca gctgaggctt ttttaaggtg catagttcct atgagcaatc
      781 tataagtggc tccttctcag tggtcactcc ccagtggtgt tcattttagc aatgccacac
      841 tgctggaaca ttgctttaaa ggattgacca ggacttcctg acacatagga gaaacctatg
      901 tggtacagct ctgatagcag ccttgtcagc caccctctgc ctcttgtaca ggactcagca
      961 gtgtactgct tatggctaac gcacactact ttgggagctg ctgtgaggcc agctgaacca
     1021 gacagagaag ctgaaggcaa ct
//
LOCUS       KCLA01002952            1041 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48059upu ultra-conserved element locus uce-4173,
            sequence.
ACCESSION   KCLA01002952
VERSION     KCLA01002952.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48059upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1041
                     /note="ultra-conserved element locus uce-4173"
BASE COUNT          296 a          239 c          226 g          280 t
ORIGIN      
        1 atgtgcttct aacacaatct cctctggcag acgtacttac tacaccgagc acaacagccc
       61 ttccaagtat acttctggct aaaaaatcat acccaactaa tagagatgaa ctctgcaggc
      121 acgttaatct cagcattaaa attaaaaagg tagactagtc ctcatcttca tcttggaatt
      181 aagatttaaa acaatttcta atccttcctt taaagcccct aatggaacgg aaggagtgaa
      241 tctggtggtg aatgccatta tgaatctcag agcctattct tggtgatgaa aattgtatgc
      301 tgtgtttgag cagactgtca tgctaatgac attcctcagt ctggtgtctc caataataag
      361 cgaacggagt ttttaaacgt agttgatggg attttttctg tctcagacac cctatgagga
      421 aaaacagaat ccccatttac tttcatgacc tctgatttaa aagcaaagat tgcacattat
      481 ttaccactgg atgatttccc cgaaatttaa tgaggactaa gtacaaatat gacagacgta
      541 attaccacag ttttattccg cacagccagg gtctccttgt gctgtaattg caagcctttc
      601 attcagctgc cgatggcaga gttattatca tagtacttga tgttatttca gagaggaggg
      661 aaacagattt ctacctcact tctaccctgc caatttatcc taaggactca gcttgcccat
      721 cctcaccctg tgttggaact gaagacccac gggaagaacg gggacaaaat cttggctgct
      781 tctcctcgcc aacgcccagc cgtgaggcca ccagtctcca cgcagttttc acaacatatc
      841 agagggaaag gacctcttga gcggggcagc atgttttaga aggaagaaag acgggcaggt
      901 ggccagctca ttgtctacgg cggggttttt tacggtgtgc tgcatttaga cttaagttaa
      961 ggttgagcga gccccagctg gaggctggac cactgaccca gaagctggag atagccggtg
     1021 acatgtacac gactggaagc c
//
LOCUS       KCLA01002953             492 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48074upu ultra-conserved element locus uce-1655,
            sequence.
ACCESSION   KCLA01002953
VERSION     KCLA01002953.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 492)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..492
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48074upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>492
                     /note="ultra-conserved element locus uce-1655"
BASE COUNT          147 a          102 c           70 g          173 t
ORIGIN      
        1 cagatacaca gctttgcccg tagccacggt attccacaaa ccctttgaaa tatttcagtt
       61 tcatgtctgt gataattaaa gagcaatgac cttctcatta gcgccaagag ggctcatgat
      121 gattgttccc catttttctt aatggatgca agctacatgc atgatcttag aatatcaaag
      181 caattctcca agatatttat tagagtcaaa attatgaaaa cacatagcaa acctttagtt
      241 tgaattacaa gtgttaatat atgcagaacc aaatgaatag ctcatctttc ttcctctctt
      301 gtatcttaaa tttttcatta caaatttcca gggcttcaaa gtagtatctc gcagtcggtc
      361 cccttttttc tctcttgcat gacaaagagc tgtcaaaaat tgttcctgtg tttgttagta
      421 tttttctctt ttttctctca tctaaatgtc aaacaactta gcttaaataa aacacagcat
      481 tcttcatctg gt
//
LOCUS       KCLA01002954             983 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48089upu ultra-conserved element locus uce-374,
            sequence.
ACCESSION   KCLA01002954
VERSION     KCLA01002954.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 983)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..983
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48089upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>983
                     /note="ultra-conserved element locus uce-374"
BASE COUNT          292 a          205 c          191 g          295 t
ORIGIN      
        1 agactgaggg tctttagata gttcttcaca aatagtcctc attcaaaatg ccaagaagca
       61 ggttcctagc aggagtgcaa actcagcgtt ccttagggca acagcaccaa gagtaaacgc
      121 aagcacaagg agcagaggag gaagaaggag aaagaaaaac ccgatacaga cccccacctc
      181 cctgctctga taaatcaccc tctgattcaa tatgaatcat caaattcaat attgccgtga
      241 tcattattca tggaaaataa attatgccaa atatgcttaa agaaatcaga agtctgttta
      301 aatggtatta atggtaaggc acactacagc aaggtgaaca acactgataa tattaaatta
      361 acccaagagg ctccctaatc aggatcccta tgcagaaatc tgcttgccaa ctgtcgttct
      421 ttttcccatt ggtttagtta agggttgaag ttcttcttga agtttctttt ttaatcatta
      481 gatcccgacc ttacagtttt ctctgactac tttccttcag gctgtctttg ctcctgtcaa
      541 tttaggattt ccagggaatt attcttcttt gaaatgcata ttccaggctt gaaatactgg
      601 catatgtaca ctgtagagta attgtggagg ccaaatgttt aattacacat gacagctgga
      661 gctgtaggag tccgaggctt gcttgaaaac aacttatgcc ctatgcagtc ttaacgaaaa
      721 agaacaaaat agtacgcatt tagtttctgt gccacatggt agccgctgtt ctctcttttc
      781 acaactgagg gtggtttgca agaagttcag ctgcttttgc ttctgtctct ttgagtttat
      841 actctttttc tcctttgtac actctaggct caaacttgtg gaccacgtaa ggctgcaaga
      901 attgctcaaa attcacgttt cctttttcct gagagacaga gaaaagattt tcagtagctc
      961 cactaataga gggtgattaa cac
//
LOCUS       KCLA01002955            1087 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48105upu ultra-conserved element locus uce-3786,
            sequence.
ACCESSION   KCLA01002955
VERSION     KCLA01002955.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1087)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1087
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48105upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1087
                     /note="ultra-conserved element locus uce-3786"
BASE COUNT          270 a          247 c          297 g          273 t
ORIGIN      
        1 gccagagcag tattttcaga cagcaggtaa gtgaggttca tcctgaattg ctgcctgaca
       61 gggctggcaa agttttcagg ccttgggcat cttcctgctc ctgcattagg gaggaggagg
      121 aggaggatgg gcagccctga gcacctaccc tgctgctgct gagaggccgc taggttttga
      181 ctgaaatttt gtgagcccca aaatagtgct cgaagtgttt aatgcttttg tccattagcc
      241 agcaaattag ccctaggctg gcaaaccaaa tgaagtttca tctcaacagt tagagcctgc
      301 tcaccaggca gtttcatccc aagctcccgc gcactggttg gtcagcgaaa cggagactgc
      361 aacttctatt tattggtgca atacagtatt tgatactgct aattacactt aattagtcct
      421 tccaccattt aattaaaatg gcttctaatg attgtgcttc tttggcaggc tctttggtac
      481 caccgggaat tgtgctgcct gcagtaaact gatccctgcc tttgagatgg tgatgagggc
      541 cagagataat gtttaccatt tggactgctt tgcctgtcag ctctgcaacc agcggtgagg
      601 acacagtcat tgcaaacaca gacaccaact ggtccgtgcc tttgcctgaa aaactgggga
      661 gatgtttgat ccaagctacc tgtccgggct ccgcagcctg gctggggctg gccggggtga
      721 tgtcatttgg cctgcactgg gtttctcata ggctccactg gggacagcgg agaagaggga
      781 gaacaaaaag aggcaggaag gagaaaaata ggagagaaat aatctgagcc ctttccaaca
      841 ctttcaccac ctcccctctc tgcagaaccc aggtgatggg gaagggacct cctctagcaa
      901 acgaatgtta ccttcccacg ggctccaaac tggggacagc aaggagggag aaagggaagg
      961 ggcaggaaag agaaaaataa tctgagctct tcccaacact aggaataaat ccctttagtt
     1021 gtgattctta ggggaccttg gtgtagtttt gggtggggtt tgtgtatgtg tgctggggtt
     1081 taacgtg
//
LOCUS       KCLA01002956             303 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48121upu ultra-conserved element locus uce-6551,
            sequence.
ACCESSION   KCLA01002956
VERSION     KCLA01002956.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 303)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..303
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48121upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>303
                     /note="ultra-conserved element locus uce-6551"
BASE COUNT           97 a           69 c           40 g           97 t
ORIGIN      
        1 ggcctctgct ccttctaaac ctcctcagtc cttcatgagt ctctgcacct cgtgataaat
       61 tttgtaatta ttcagccctt actaccaaca ctgaaattca tcactcaaag caaattagcc
      121 gagattcatt agaataagac atctagtagg cacatgtact ttattagcct cttacaccaa
      181 tagttttaat taggtacata tttcacagct ctagagctac ttgagtgaag ggctgctttt
      241 atctctttta tttacagtaa caagctatca aaaaaatacc agcataatta aactcagatt
      301 aaa
//
LOCUS       KCLA01002957             667 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48137upu ultra-conserved element locus uce-7456,
            sequence.
ACCESSION   KCLA01002957
VERSION     KCLA01002957.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 667)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..667
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48137upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>667
                     /note="ultra-conserved element locus uce-7456"
BASE COUNT          192 a          138 c          158 g          179 t
ORIGIN      
        1 ttaccctctt gctttgatag aacctacagc cacaatttat ggtgagtggg aggcttttca
       61 aacacagcgg ctgcttcact ggagctgggg ggaagagagg ttgtgcgtgc agttaaagcc
      121 ataaacgcga gccttcgtct gaaaaaaggt aattgtgctg cgaacgctga cagctctgac
      181 agaaagtgtc ttcattgaga aattgcattt tgaagttctt cccgctcctg cggtaataaa
      241 tggactaatg caccagggct ggctctgaca ggaagcgggg attcgagact tcaaatacaa
      301 acattatgaa aaacaagcaa catctgcaaa cagtaagtac ttatttatat tttatggagt
      361 gtgtgctggg gatttggaca ggtttttaaa cagagcctat attaggccca tacaaaggtg
      421 agaatgtccc tttttaaaaa tacattacgc tgctgaaaag cagtggaaat ctgcagtcca
      481 agcctcaggt gagctctgac ccctcctaac ctggtctaac aaaacacaca tgtggtgttt
      541 gcaatggaac agtttactgc tactttctca aggtcaggac aagacagaca cttgagggtt
      601 agtattcagc aagcttttcc ctcagctgcc agagtggctt tgaacttttc ccttttgaac
      661 aaatagg
//
LOCUS       KCLA01002958             942 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48167upu ultra-conserved element locus uce-6548,
            sequence.
ACCESSION   KCLA01002958
VERSION     KCLA01002958.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 942)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..942
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48167upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>942
                     /note="ultra-conserved element locus uce-6548"
BASE COUNT          306 a          133 c          169 g          334 t
ORIGIN      
        1 caagccatcc attgttttga atgtgaaagt aaccttatag tcatagcctc tattttcagt
       61 atagaacaaa gctagttaaa atggacagtg tatagaatga ctgtgatttg ctcagtgtgg
      121 gaaatgatgt agtatactag ataataaaag ctcttcctta atatcaagac tagattaata
      181 ataacaaaat aattattgaa aaaatgtttg gactttaaat cttttcataa ctgaaagatt
      241 tgaatcatgc caactgtggt aggtcattga ctggttttgt aagggatatg tgcaggaaga
      301 tttttttttg taatctactg ctttgaattg ttttctgttt cttcattgct tttttatttg
      361 caccatttat tccagcagga ttctcatttg cacccattct aatagtgctg ctgatctcta
      421 cataaaggat tatttacatc catatgtaga agcaggcaat ccccaggcaa gacctctcag
      481 gtattttttt aaggcttatt atgtatctat aaaatactat tcttaagaaa aggtgtctat
      541 aaaaaaggct aaagaacttt taaaacataa aagcttattg gctttgaaaa acatagacaa
      601 aaaggaacgt gaaacaatgt cattttgggt tgctgtttaa ataaaagtaa agacatcctt
      661 ttttaagctt ttattattct gttaataaat gtgtctgtcc taatgagcaa ggttttgata
      721 tgctcctcta aaggctacta tgataaaata aaatgaactt taattgtatt ttaattcctg
      781 agaatttgac tcacacttgc aatgatgatt tggaaactgg ggttacccac ctggctattg
      841 gaagaaaaat gttgatgcca taggagctgc atatttagag aatcatgtgg aagtaatttg
      901 gccttttctg ataagtcagt ttgaagtcat tgtacttgtg gt
//
LOCUS       KCLA01002959             624 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48182upu ultra-conserved element locus uce-4820,
            sequence.
ACCESSION   KCLA01002959
VERSION     KCLA01002959.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 624)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..624
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48182upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>624
                     /note="ultra-conserved element locus uce-4820"
BASE COUNT          178 a          143 c          121 g          182 t
ORIGIN      
        1 cagcatactt ggagcaaatg gttttgtggt aaatagagga ttatgttaaa taatcaacac
       61 ttcatccact cccttcaaac cagaaaaaat tttccacatg gagtggcaca actccatatt
      121 atttccaacc agctacacct gttgtgcaac accatctata tgagacagat aacagaagct
      181 acagttaata tcttaaaata tgaaacagct tcaaatgcct gatggcttac ctggcttgta
      241 agttattcct ggggggaaga ggaatccctg ctgggctgca gcagccgctg ccagtgtccg
      301 ctggtcgtgt ggaaaaattg ggatcatgag cggaggcatg tgaccctgaa cctgctaaac
      361 agaagacagc ctctgatcag aaccagcata aatttgactt gacaggtatt tctccagtat
      421 tgatagtgtt cttgtgttca cagtcccaca gaaccttcac cttaatgcaa tccctgccaa
      481 attcacatta tcatagtcct tactaacatg gttttccctt aatgtcaaag gtgtagcagt
      541 ctcagtgaac tgcatgtttt cctacttctt cctggttctc ttttttttta taaaatagaa
      601 ttccctgtcc tggcaccagg taga
//
LOCUS       KCLA01002960             714 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48197upu ultra-conserved element locus uce-1545,
            sequence.
ACCESSION   KCLA01002960
VERSION     KCLA01002960.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 714)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..714
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48197upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>714
                     /note="ultra-conserved element locus uce-1545"
BASE COUNT          193 a          148 c          150 g          223 t
ORIGIN      
        1 ctttgcagag acaacttgca tgaaactgaa ataaatgaca acgccaaagg aaagattctt
       61 cactgtcgtc aaactgttcg gaaagcgtta ctgtggttca ttcattttcg gctgcaatgc
      121 cacgctgaaa acatacttct gctggctggc ggttgattga tgtacattac tcatatcagg
      181 ctaatggcac tttattttcc aagagtagca agtaatgagt gaccttgagt gcatattgtt
      241 ttgctgaaag gttttgttgc tccgtgtact ccgtgagcac ccccaaggaa atgagggccc
      301 tgtattggtg tttttcagca aacctcattt ctttcatggc tttctgtaaa agaatttgat
      361 acagggatag aagctaacct cagtgagtaa atgaaatatt gatccacact actctggcct
      421 tgccttcacc ttgtcccagg gctgtgagtt actgactttt ccgttttggc tgtaatagga
      481 attattacaa caggcctgtg cgagtaatta cttggcatgg caaaaaggag ggcccatcat
      541 atatttctgt agagacgtta gtttccatca gcccagcagt ctgctttttt ggccctgtct
      601 ttcctactct tgattcaatt cttttaacca tcattaatca agttccttgt cagtagaagt
      661 ttatcaaaag tattaagtga gcaaggttgc acggcctcct gcaaaaaaaa aaga
//
LOCUS       KCLA01002961             974 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48213upu ultra-conserved element locus uce-4309,
            sequence.
ACCESSION   KCLA01002961
VERSION     KCLA01002961.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 974)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..974
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48213upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>974
                     /note="ultra-conserved element locus uce-4309"
BASE COUNT          323 a          187 c          204 g          260 t
ORIGIN      
        1 aagggaggga gtctggctga agcaataaca gaacttctcc atgtgcattc tgcagaagcc
       61 ctacagaaag gcaagcagac agccctatgc agaagccctt ctatttcact ggggtggata
      121 gctgagtttt aaaggacaaa aaaatccact tctgcatctg aaactaagca cgaacattta
      181 cccgttttta atatctttag aaataattcc acaatttaaa caagcgccac agggaaacat
      241 cttagtaatg ttacatgttt gccaagtatg tctgaaaaat gccaacgtaa gaggtgcttt
      301 tgcaaggtct acattctcca gaaaaaaaga aaaacaaaaa aataaagcac atgaatttgg
      361 ggttgaggtt ggaataggag acagttcaga cctggtttaa tcctgagaaa gatgggtcct
      421 gagaagtact aacagtcatg cttcttttcc tcttccccac tggagattct aaacactgaa
      481 caaacaatag agggtggcag tgcatcaaac agtattgctt acattgcaac aacggctggc
      541 gcagacaggc aacaccaagg cgttcgagaa agaacagggt agccaaatgc catccttctt
      601 ccaccaagca ctgtagcttt caaactggtt ttatgttttt tttttttttt tcaattgtgc
      661 atttaaggag agaattttaa agatgggaca aggtaaactt aaactgtgag ccgctccaaa
      721 atggcactgc cttgacaagg gatagcaacg gtgacatttg gctctgttaa aaaaggaaat
      781 ttaagttttg tttgaaaaag tgtcctttgg ttccacaaac tgcccttccc ccaaaagaca
      841 tttagaaaaa gtaaatcttc agtaaggaag aggtagaagg catttagtca ccttaaagtt
      901 tactttcata agcatgcagg gctgatttcc agcagagctg aaaattcatc ttttaaggta
      961 ggagtcaaat ttct
//
LOCUS       KCLA01002962             995 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48229upu ultra-conserved element locus uce-4618,
            sequence.
ACCESSION   KCLA01002962
VERSION     KCLA01002962.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 995)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..995
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48229upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>995
                     /note="ultra-conserved element locus uce-4618"
BASE COUNT          238 a          279 c          251 g          227 t
ORIGIN      
        1 gctatgaggt gtcctgtcag cccacagcgc cccgccctcc ccagcatctt agctgccagg
       61 tctctggtgc tgagagcttc cttcatgaga attgcccgct ttgagttacc ttggcagtta
      121 gttttaggtc gggacctcag aactgtagca tccctagaaa tgcagctccc acaatctcac
      181 gggtgtgtgc agaactgttg gcaatctaac gctttctttg ccaactgccg ccaggacccc
      241 gactgccagt gtcacagcag actgcaccca gcctggggtc ttcctctggg gactttacac
      301 tttgcctctg cttgtggtgc ttgtccgtaa cgggtgggga tgtgggaggg ttgtgctggg
      361 tggagttaag tttaccacta cgtccttccc cacactaggc cctgactaag acaaagtgcc
      421 caagaagaag tgaatatgtc tattgaccga ttgtaaaggt gagagaggat ctccaaagcc
      481 cattgtcact gctgccatct gaaagacagt aaagacagag ttcagtctgt tggagctgag
      541 catactacgg ctgtttgtaa aaactcaagc agagtggcgg cacaggcaac ctgtgagaga
      601 ggcctctcct tccttgcccc tcactgcctg gtcccatgga ctgtccggcg ctgggaccct
      661 gcagattcca gtcccaccag gtcagggtgg agttgtgctg ctgccactgc ctcaggaagc
      721 agggtcttct cccagggggg actcaaggca atagtaacct ctgcaaccac tgtcattgat
      781 tcacccccag catttaaaaa ggagtccctc aactagatca gacactcaga aacacgcaca
      841 gccctgagca attggagctg cctcatggca gcgcagccac agcaaaattg ttacaaatct
      901 ggcaccccac agccaatact ttgggattcc gcacttgaag gcaatgagat ttgttccaga
      961 aaccccaaaa agaagattca aacacccatt aaggg
//
LOCUS       KCLA01002963            1062 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48243upu ultra-conserved element locus uce-7063,
            sequence.
ACCESSION   KCLA01002963
VERSION     KCLA01002963.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1062)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1062)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1062
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48243upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1062
                     /note="ultra-conserved element locus uce-7063"
BASE COUNT          264 a          217 c          263 g          318 t
ORIGIN      
        1 tacgagttgg aaggggttat ctcaacgctt agacattgct cttgcagact cagtgtgtta
       61 cgaggagctc gtgtgcgtgg cattattaca agattaattg ctttaaattg ctctcacttt
      121 tcctctcttc tttttttaaa tttcaggagt tttatagcca gcctggaagc cacacaactt
      181 ttaggggctt ggcttcattt tttctttttt ttttttaaac tctctttctt tgtaccctgg
      241 aggctgtgag gtggggaaga gagagcaagc aaggagacgg acagacaagt catgcttgtt
      301 ttttcctcca gagcctcaac aacagaacta agaggcagaa aggagccagt tgtaattcat
      361 actgagttgt aggctttgtg tgatgaaagc gacggagcgc tgcctgggag attgctttgc
      421 tgcactccac gaagcagatt tgaaactgtc gtggaccact ttagatgaga gttggattat
      481 ggaatgacct gctatgtctg tgtcatattg ttctgcgcag ggtgcattat actgtgctaa
      541 ctaggtgctc agtaccaaat aagagaggtg tcctagatgt gatctgtcag ctgtgtctcg
      601 tatttttata ttggttaaaa tataaaactg aagcagtgat aagagaggac agagcagttg
      661 gatgcctggt acgttcacaa taaatccaca ctgcaagtat ttaaaatgta ccgagtcgaa
      721 tttaattgct ttgagaaacc tggccttgcc cttggttttt tgaaccaaca aataaccccc
      781 ttcaaagagt gtggctccac gtatgcgtgc ctgcagtaaa ctaagctgtg tgtactgctt
      841 cataagggca ctgcgtttcc tttccgcaag gatttgtggt gttaagtgcg acgtttcagg
      901 gagcccaaga tgctcacagg caggatgtgt gagaagtcgc tcagaaggag cctgagctct
      961 ctgttaactc tgttttttcc tgccgcccta ggcttgaaga tgcagtggac gccggagcat
     1021 gcccagtggc cagaacagca ctttgatatc acttcaacca cc
//
LOCUS       KCLA01002964            1108 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48259upu ultra-conserved element locus uce-4837,
            sequence.
ACCESSION   KCLA01002964
VERSION     KCLA01002964.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1108)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1108)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1108
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48259upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1108
                     /note="ultra-conserved element locus uce-4837"
BASE COUNT          345 a          207 c          240 g          316 t
ORIGIN      
        1 atacatgttt ttaactttat tcatagagag ccatgaagtg attaaaacca aatgagagga
       61 aagacgacag ttggtagaac aacataaatc atactgtaaa atatctgggt agtgtaacgc
      121 tgccaggcac tgcaactggt ttgcaaggct ctgcagagtg ttaggaacct gctcagcagt
      181 taaagggtat tcaacctgat ctgcctttgt tgatagctga tattatttga cattttaaca
      241 aggttctgta tttgcacaag catcttatgg cacctcttcc aacatcagag cctatggcaa
      301 acaacatttc aactgttttg caaacaaact ttctcccggt taataattaa acagaggaac
      361 agcttgcagt atatgcttga aactaatttt actatatata gttgtaaatg acaagagcac
      421 atgaagatgt gactgaagcc tggtagcatt taaatgctca gtacttcctc tgttaccttg
      481 actggtgtaa agttggttcc caaggtaaaa actaagtggt ctgctggcat atggtataac
      541 ctccatttgc gcgctaaaag ctggatcctg tttttgtgaa acagatgttg tagagtgcag
      601 caatgcacaa ctgactctat ctaacagctg ggaatcctcc gtgacccata tagctcggaa
      661 taaacatggt cctgtgcttg gcaaaagtgt aaggaagcaa attttcattt gttaagggct
      721 tatcaaaatg aagaataaat gtttttagcc ataaactgat tttattcaca agagtaatct
      781 ttccagcagc ttatgcgatg gcctcataat attacaggca ccctttgcca gatgaaggct
      841 gcagtcgcgc tgacatatag tgcagatgga aaataaacat ctgcctcaat caagagagaa
      901 gaccaaagac aaggttgacg aatattatct ggcaggacta tctttgcagg aaagcatata
      961 aatgctacag gaccaaaacc actggcatcg tctggtgttg tccttatgtg gttactgacc
     1021 atgaagagag atgattagga tgcactctct aaggaggagt agtgcagatg ctcgggatga
     1081 tatgattcca actcgctggt atgtgttt
//
LOCUS       KCLA01002965            1044 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48275upu ultra-conserved element locus uce-1281,
            sequence.
ACCESSION   KCLA01002965
VERSION     KCLA01002965.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1044)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1044
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48275upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1044
                     /note="ultra-conserved element locus uce-1281"
BASE COUNT          316 a          201 c          170 g          357 t
ORIGIN      
        1 cattctgtga gcattccgaa tgagcagtgg gcatttttta tttcagtaat ctttaaatgc
       61 taaaacagag ggggagagag tggacccgag gatgtctgca gctttacaag gattgatttc
      121 tgccaagcta taacattcca tttcagttta gttgctattt taaatattag ttctaaatac
      181 tcatttaatt acggagcaca gagcactgtt tttacgggat tcatttcaga cagggtcctc
      241 tcttactggg ccaaggagat ctgtaaaaaa cactctatca gtagagcgca tcggcttctt
      301 tatatctgag aatgatgtga aaagaattct gactctctca tgcttaaaat aattttaata
      361 tactatattg aacagtggtg tttcactaag aatttaacaa tacctggaat aaataatgtc
      421 ttttgcagcc tggggcagca tctgccactt aggcattaat tctgcccctg tttgaacact
      481 ctacaacata tgcacttctc ttttgtctgt tatcctagag ttgttttatt cccaaatatt
      541 gacatcatct acttttatca gcactaactg ctctgaagct tcctagtctc atgctcagct
      601 ctatttcttt ctattgatta tcttcctcac tccagcaggt agctagccag cgaggctgtc
      661 ctgagaaata gcttccaatg actttatacg cacaatttac acggaattgt ttaaagaaga
      721 tattagcctc aatacaaatc agtgaacctc atttagtcaa tactgcacaa ttcagctgtt
      781 ggcaccctgt catatgttag tctttaaagt caactaccat acccaatctg cacattagcc
      841 ataatattta gtttcatatt aaaaagaggc tggtttttca cttttctttt tgaaatctat
      901 tcaatagact ttttacatca cctcattgaa ccatatgata gtaatataat tttaagtata
      961 aaaacctgag attaaatgct tgatttttga cagtgtcctt aaatataata aattcaaagg
     1021 gaaatactgt taagttaaaa tgga
//
LOCUS       KCLA01002966             486 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48291upu ultra-conserved element locus uce-3223,
            sequence.
ACCESSION   KCLA01002966
VERSION     KCLA01002966.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 486)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..486
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>486
                     /note="ultra-conserved element locus uce-3223"
BASE COUNT          168 a           97 c           83 g          138 t
ORIGIN      
        1 gaaaataagt gatgtagtgt acagaggtac gtgaaaaaca tagagagtgg catgattata
       61 tctggtacta tgaaaagcat ttgtattacc cttacttctc taaataaatt caaatgacag
      121 ccccatttca tttcttcatt cagtctggag gccagatggc attagaatca tttacttcac
      181 cttgttgtgc ttaattacta caatcaacac actattttcc aaattaatca taacaaagta
      241 atttcattag taacacagca ggctgttgaa ttattagcat cataacagtt tgcaaacaat
      301 taaactttat ttgaacctta aaaatttgcc gagtagaaca ttactgtaag atctaatggc
      361 agtatagtac aaacccggac agagcgaatc atcaaatagg agtctacaca acgcgtgcct
      421 tgccacctcc ttttccaaca ggagcagggc ccgagcagac aaagcaataa agcagtacgc
      481 gttttc
//
LOCUS       KCLA01002967             958 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48307upu ultra-conserved element locus uce-1192,
            sequence.
ACCESSION   KCLA01002967
VERSION     KCLA01002967.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 958)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..958
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>958
                     /note="ultra-conserved element locus uce-1192"
BASE COUNT          287 a          204 c          169 g          298 t
ORIGIN      
        1 tctcattgca gaattaacag cataaaacct gttggagtga ctcttaggta ctacctgcta
       61 tcatatagta ggtagctgaa aattatatta aaattttttt atacaaacag atgctgattt
      121 taaaaggttc cacatatgta tttatcacat ggaaaacaat ttgcttattt gataagaact
      181 gtacagttta tcccctgcag caaataaaac ataaaatgta attactatta tctcctgttc
      241 ccttttcctt acatgggctg tgccttcatt tttttggttt gtttgtttgt ttacaaaatt
      301 aatcacagct agcagggtgg aaatcacttt gagtctcatg aatgacatcc aagagatggg
      361 aaaggattag ttcacagttg ctgccagtta tagcgccagg tggctttttc tgcagtgaag
      421 gtgttaccga taatcccatt acattggtac taaatcttgc agatatcaaa attatcacca
      481 aggttccctt tcatcccatc ctttccaaat gactggaagt cgcttcacct gaaagaagtc
      541 aaatccacat gcagctgctg ttttagcagc cagcggactc cctgagaatg ccaatcgtga
      601 tccaattttg ctgtgctggt ggccccctat tccctgtcca ataatacatc tgttaaaaaa
      661 tcctacagct acaaatcaag tttaatccta ccagggacct catgttggtc ttgtcttcca
      721 aaaaggcagc aggttttgcc gtctatctct gctagtgtct ggggaatact ctttaaatcc
      781 cagccctact tagaagaata agctaaggat cacaaaacat gacctcaaaa accctgatat
      841 gactatattc tgacccaaag gcattcattc tacgtgaaga ttagaacttt gcataataag
      901 attacacagc aagtgaatga tatcaaggga ctatccatat gcagccgcct ggttttct
//
LOCUS       KCLA01002968             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48323upu ultra-conserved element locus uce-1374,
            sequence.
ACCESSION   KCLA01002968
VERSION     KCLA01002968.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48323upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-1374"
BASE COUNT          167 a           85 c          102 g          168 t
ORIGIN      
        1 catgacacaa tgcatcctta agtttttcat tgttaattaa gaaattaaga aacatacctt
       61 ttaagaaata cgattaaagg tatcattagc tgcaaaataa tacatttctg agcttcaaaa
      121 tgttctactg gagctttgga gctgaagaca gtcatatcct tgtgatattt cagtgacaat
      181 ttctatttta agtgtcaaaa acaactctgc tatcaggagc aagtagtgta gtattctctc
      241 cttttaatat tctaatcgtg aggtgtaaag tgaaatggtt gcacagtgta atggtggtaa
      301 agaagctgag tgtcaatgag acgggaaagg tgacagacat ggaatgagtc cccaaggtgc
      361 tctccaagtg cattggataa agattcccct gggaaatttt tctcattagt tctcagacac
      421 agttcagtaa ttcaatagca ccaggttacc attagtcaca agaccaaaat atgttacttt
      481 ctatgattta gctccttgat ttgtatgtgt catttatgag ag
//
LOCUS       KCLA01002969             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48339upu ultra-conserved element locus uce-545,
            sequence.
ACCESSION   KCLA01002969
VERSION     KCLA01002969.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48339upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-545"
BASE COUNT          269 a          132 c          141 g          237 t
ORIGIN      
        1 agggaaaccc accctggggc agatcacggt ggattcccat tacacaagga aaaagaccct
       61 atgccctagg taagaaaggt tctggtgtga caagtggtga agaaataagt gaaagccatt
      121 acaaaggtgt attgttcagc aagtttattt cctgacaccc catgcaagca gttacggctt
      181 cagcaaaact taatttgatt atctttatat ttttttgtgg tgctgtatac taacagggca
      241 aataaaaggg aaaatagtgc agtccctcgt aataaagaaa acagcagcaa actattaatg
      301 ctctttgaaa agagtagttt taacaaagta agcaagaatc attttctttg gttgagtgtt
      361 gattccctag tgtgctctca gtaagtaatt agaatggccc agtgaatgtc agcatcagct
      421 tgtttattct cattatttta tcattttaaa aaccctctag gtgatgagac atgcagtata
      481 gaacataatt accattatta gcatactaat tggacacaaa aataggccaa ctacaaggta
      541 gccaactgaa taatttcaca ttaatcaaac accatagtga ataagcctat tgttaaattg
      601 acagctacaa taattggcaa tatttcgttg tgaaatataa gaaatttctt ataatatctc
      661 tgcaatgtta tataatttag taatttccca tatttctagc cctaactttg tacacctagt
      721 tcaagttcaa ggaaacatcg tgataagatt atgagtctat tatcaagtgg agaaagtct
//
LOCUS       KCLA01002970             243 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48353upu ultra-conserved element locus uce-7164,
            sequence.
ACCESSION   KCLA01002970
VERSION     KCLA01002970.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 243)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 243)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..243
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48353upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>243
                     /note="ultra-conserved element locus uce-7164"
BASE COUNT           84 a           51 c           52 g           56 t
ORIGIN      
        1 ggaagcaagg cagaagagag agaacgaacc caacaacaca acagtggaac aggcagctgg
       61 cctgagatgc taattcagcg ctttaacaaa tcaatgccac ttgaaaagta caatgcgagc
      121 cctcactggg tagatgtcag gggaccaaga aaatgcattc tcaagtattt cacattaaga
      181 gggaattatg tgttaattta taactcttca ccctatacac ttggattatc catctgtgtc
      241 aat
//
LOCUS       KCLA01002971             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48367upu ultra-conserved element locus uce-3940,
            sequence.
ACCESSION   KCLA01002971
VERSION     KCLA01002971.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48367upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-3940"
BASE COUNT          178 a          124 c          131 g          132 t
ORIGIN      
        1 aaaaaaaaaa agaaagggag agagacattt tctttcacac aagccctcag aattacagtt
       61 catgaactat tcagtaaact gaccggcatg aacctccctt caacggccta atctaagggg
      121 tggatctatg tgttttgttg cttgtcaaaa acaatcactg ctcggcccat tacatttaca
      181 gcacgtcgtc ctttaattgg tgtaacacac tgagggctga aaggaagaaa gtcctacaaa
      241 agcccccgag tgaatgaacc ctgactcaca caaaaatact cttcagaagt tcagagctgg
      301 gcactaacaa gggaggtaga gagttagttt gaaaaggggt taagttcaga aatgtgccac
      361 cttgaagacc ctcccatcaa agccatgata gcattgacaa gatgcagggg gaaaaaagtt
      421 aatattccag cctttggggt gtgaagggaa ggcggggaag agccgaagat tcctcccgac
      481 tccccttccc ggtctaaccc ttttcacttc ggggtcgttc tcattgtgtt cttcgactgc
      541 ttaagaaaaa tacgaaagga aaggg
//
LOCUS       KCLA01002972             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48383upu ultra-conserved element locus uce-6406,
            sequence.
ACCESSION   KCLA01002972
VERSION     KCLA01002972.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48383upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-6406"
BASE COUNT          295 a          181 c          153 g          246 t
ORIGIN      
        1 ttttattaat cacatgacat acacttagtc ctcatcaaat attaatgtat attgcttcct
       61 acatcaataa agggtacttt gtatgtagaa aggaaacctg cttatgaaaa tgctagctac
      121 actcactaag cattcaaaca attatcataa aagcgctaga aaagaaaata cagatctgtt
      181 aagcaatcct aaaatcttct taaaccacac attgtgcttt cctacagaga attttaagat
      241 gaaaaataga ccttgagggt cttagacaag cctgaggcaa tataaagaaa aaggtcaaac
      301 actctgctaa aaaggaccgt tatcttcaga acaacaactt atcagccagc ttgcagccct
      361 gcttatttac aattattggt cccagaggaa gtgcacttca gcgcagggcg cgattacttt
      421 gtaatgagtt tgccagaaat ggtaaaggaa actaatttgt aacaatgtgc tgttccctgc
      481 acatgaactt tctcagacac tttttttttg tccagcaatg aataactaac ttcagcctcc
      541 ctaataagca gtgaaaatac aagtgcacta aaaccaactg agtcacaagc atgaatgtgc
      601 tgaaatatca gtgattatcc ctctcagctg tccattacag tactcatgat gaccaccaat
      661 tcccccgtgg tggctttata gaatgcaggt ttcagggggt ggatttgcac atgaaaatta
      721 acaccatttg gaagaaaata gcctgcacct gtcacagatt agcaacaaaa ggtcaaatgc
      781 ctccttttac acctagagca cttgcatatt gtatgctttg cttataggag cctaattctt
      841 gtttcttaat tcagaaaagg gagcaccatg gtgaa
//
LOCUS       KCLA01002973             617 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48398upu ultra-conserved element locus uce-2259,
            sequence.
ACCESSION   KCLA01002973
VERSION     KCLA01002973.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 617)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..617
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48398upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>617
                     /note="ultra-conserved element locus uce-2259"
BASE COUNT          188 a          118 c          127 g          184 t
ORIGIN      
        1 ttctgaaagg ctatcccagc agaatggaca tcagctgtta gattacttca ttccttcaca
       61 gcagttgttc atctgaaaat agctttcaaa tgaaaagagg caactacaaa aggattagtt
      121 accataggca gcatgatact cccacaagat tatttatggc aaagcaccca gagacaaagc
      181 tgtacgagag ttaaactcta tgattaaaaa aatgcattag ggagggctag aagacatggc
      241 acatagtgta agctggattc agtgctatac catttctctg tatttcatcc ataatggctg
      301 atgcttgttg tttcctctct ttgaccatgg cagaatgtga taacattgtg attttctgat
      361 acgctttttc cttgctgaaa aaaaaaaaca catttttaca ttgttgagcc accttgtgcc
      421 atccagtcag cttcaatttc ttatagcctg cttagaatgg ctggatagtg aagagaatta
      481 tttcagatat agaaatactg ctctgttaat tgtgcaaagt acactggcag ttcttgcttg
      541 cagacaggtg ctatgacact ctgatggaca gaagatacga aggactggac tctgacttgg
      601 ctacgtacgt tgcatag
//
LOCUS       KCLA01002974             698 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48412upu ultra-conserved element locus uce-7055,
            sequence.
ACCESSION   KCLA01002974
VERSION     KCLA01002974.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 698)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..698
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48412upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>698
                     /note="ultra-conserved element locus uce-7055"
BASE COUNT          181 a          204 c          211 g          102 t
ORIGIN      
        1 cctcagccac agaagacagc caccaaaaat gtctgcagaa agggaaggtg gggggatctg
       61 ctggcccctc gagggtacac agccaggcgc agctcacgcc acacagccgg ctgccagcag
      121 cctcgctgag gggcctcagc actagggcag gctcgaaggg caaggagagc tatggggaga
      181 aatcgtcacc gaggcaaggt gcacaggggc cacatcagct gggtgcaggc caggctggag
      241 ggcccgccag aaggggaagc agcagcagtg gggacagcag aggaaccatt acaccgccag
      301 cgttcatgag ctcccgctgc cggccagcga gtaccttaat taacgtttcc atattgccgt
      361 taaacagttt atgattatag actgagagag gcctaggtct cctcattttc tgtggcttag
      421 ggggaagaca tgggggcctg ggagaaaacg gaacagaaca aatcaacaca ccaccaacac
      481 aaacacaagg acagggcgag agctcgctgg aggagtaaac cacacagaga aacccctctg
      541 ggagggctcc acgtgcagct ccctgcactc agtccccccg cagacaccag ggacctgcaa
      601 ggacgtgtgc tctctgctcg ctccacagcc ctgcagccgg gacacacgcg gctctcgata
      661 aactatctgc agtctcagtt ctgctggcaa cgaagggc
//
LOCUS       KCLA01002975            1094 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48427upu ultra-conserved element locus uce-591,
            sequence.
ACCESSION   KCLA01002975
VERSION     KCLA01002975.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48427upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1094
                     /note="ultra-conserved element locus uce-591"
BASE COUNT          372 a          189 c          266 g          267 t
ORIGIN      
        1 agaaaaagtg aggatatgca agtggtgaac actgcatctg gagtcaggtt ataaggccag
       61 ttagaaatca gattattaat gggctttcca agaaaacaat aacaaatgca agacatacaa
      121 caaatgagaa gtgaaggaaa gtgaaccaga gttagcattt catcagaaat aattatgaac
      181 aggcaatgtt gaggggagca aggtgggcca caaagacaga gcgagagact actttgaaac
      241 aatttgattt acaatgcagc aaatatgcaa cacttgaagc tgtgctcctt ccattgaaat
      301 aaaattagtg gattgtttgg gtgggcaact cacgtaaaag ttcagtgaca aaaagactta
      361 atggggaaaa taagacagaa aacttgaaaa aaacaataca ccgtctataa ggggatacta
      421 tttaattata tcaaaggcag gtaataaaat acatttctct ctttctaatc aggcagtgag
      481 gcataaactg ttgggacata ccgctcgggg ccactgctgt ctgggactga aacactggca
      541 ttgtactgca ttggtcattg gcgttcgtgg atgttggcat tgggcatggg tattcaatcg
      601 gaagttgtca agtatggtac ccgtttggca acgagcacat ttttgggcat agccaaccag
      661 ggttttcaca tgggcgttcg ggggcggatg ggccaacgtc atggtgggca acgcaggggc
      721 aagtcgatcc agtacatggg caacggagat atatggccaa aaaaacaagg agagggaaaa
      781 gggggaaaag caataaattt taatttaata caaactatac tcattactct caattaatga
      841 aacaagctta agttgttctg acaactagca caataacgga tcgctacacc gactgtggct
      901 taacagtatg gaccttaaaa atgagttgct tgacctgact aaactgcttt ctacttttaa
      961 catgaagttt cagtagcagg ctggctcacg agggtagaca caaaacctct taagattgct
     1021 acctttagaa ccttgggcag attgggaaag cagtctatta tctggactca ggtgacgtgt
     1081 caattggaaa aaaa
//
LOCUS       KCLA01002976             951 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48442upu ultra-conserved element locus uce-6774,
            sequence.
ACCESSION   KCLA01002976
VERSION     KCLA01002976.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 951)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..951
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48442upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>951
                     /note="ultra-conserved element locus uce-6774"
BASE COUNT          315 a          160 c          164 g          312 t
ORIGIN      
        1 aaacttccct ttgcaacatc cctgtacttt tgctgttgca ggattagttt ttgaaacaga
       61 taacctgctg tttagacata taaaggtggt aaattaatta aacaagttct aaaaaattta
      121 aaagatgtgt aaatttggag aagttagtaa tttctttggg actgtgggag accttaactg
      181 tggctttact tcactattga agcattttga tagaaagccc agcataacag agataaagaa
      241 ctcacaccac agatactttt taaaatggaa ataaaacatg cagcacttgt agcctggcaa
      301 tgctaaaaaa gaatatgtag tgagaaaaca aacaaggcaa agtgtgtttt ttcagcaggt
      361 agatatatat atacacttaa tttaatgcag caggtctcag tggtctcttt ttccacacca
      421 tacccccctt ttttttgagg catataaatt ccaaccatgt tttgtgtgaa gggtctcagt
      481 gcatactgac attgtgagtg tcagctccag atcactttaa tcagagagtg gatatgcatg
      541 ataaaacgga taagggactt taatcaaaaa atccgctggt ctggaaacgt gacgcactcc
      601 gccaaacaca cttcatccca cttttcttgt gccactgcca agatttttat ttcatgaata
      661 tgcattggac atgatattac attaaaatgt gacattgttg tgtagtggta gggatttgga
      721 attagaataa ataaataaat aaaaagactt ctgtaaagtt tttgtaattg aacattatta
      781 ccatgttatg attttacata tatttataca cctacccaca cttttcctta ctccaacttt
      841 tattttttaa ttgaatattg aattcatccc tttctgctta atacgaaaaa caatagtagc
      901 agatagatgc tgtggttaac atttacctat aggcatgatg tatagaattc t
//
LOCUS       KCLA01002977             897 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48458upu ultra-conserved element locus uce-2060,
            sequence.
ACCESSION   KCLA01002977
VERSION     KCLA01002977.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48458upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>897
                     /note="ultra-conserved element locus uce-2060"
BASE COUNT          234 a          186 c          200 g          277 t
ORIGIN      
        1 tctgtttggg attagctaaa tgttcccctt tgctggactc aacctgcaca tcccaaggca
       61 gcggaggttt gcagacattt atccccatag gggtagtgtc tctcctgctc ctgagcaagg
      121 ctcggggtag gttctgcgcc cgatgttatc tcctggctct accatggatg aagaaacacc
      181 agagcacttt aatagaagca tttgtcctca ctaagctgag aatgggaaca cacctttccc
      241 cccgttggag ccgcaactgc aatggcacaa ggctgtagag ttttattatc ttggtctcag
      301 cttaaagtac taagaggagc ttctttaaga aagtttaaga gaagttctat aaaccatgtc
      361 tatatataat cccttttgta agcatctagg aaactgcagg acggaaaggt tgcctgccag
      421 acctcagaaa gcaaatacta attcagcagt ctagtcactc tgtcaaacat ttagtgtatc
      481 agggttgatt gttccctggt aggtatagct ctggtatatc cgccaggcct tttgtcatgt
      541 taactgcaac cgatcaatgg attgaggtca ggacttctga tgtaggtgca agcttagagg
      601 gaaaaaagtc tcaaagattc attttttctc gtctggtagc actccggtca cttatttttt
      661 ctcagttagc ctctgctgct ctaaagtgga tattgatcag tgctttaatg caaacctgtc
      721 aaattaattt tgcagagctg ggatatgact ggcctaaaat tgcttctgca tctgttctct
      781 gcagcaagcc tatgaatttt aatcatgacc agaatgggct gttggctttt tttgttagaa
      841 acttgaatag gaaaggttta aactgtaaat gccatgaaat gatgctgttt tgttctt
//
LOCUS       KCLA01002978             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48473upu ultra-conserved element locus uce-7888,
            sequence.
ACCESSION   KCLA01002978
VERSION     KCLA01002978.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48473upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-7888"
BASE COUNT          194 a          200 c          181 g          176 t
ORIGIN      
        1 ctgggtcctg gtaggacgac gtcagtcctt cgaacaccag gaatttcgca attcccaggc
       61 gaaatttcga agacgagcga aacgccgggt tctggcagcg aagggcagag cgaagaaacg
      121 taaacactct cctcgcgaaa cggttaaaag cacaaaatta aaagataaag cccttaaaag
      181 actttacagt gattgataag acagcggtca ctccagtgct tcctcgcagt ctctgctaat
      241 tactggcgag ccatcgaatg ccgcggccac agctgcgggc tgcgagcgag cggggccatc
      301 agtcgctccc agtattgatt acccagcaat tccagccgat cgggtgctgg cgctttagag
      361 acaatgtgct tccctcagaa aacctgtaat gagcagttcc tatacaagac tacattctgc
      421 tgacatcaga tctctgcact aagatagtac acaggtcaat acatattgga tttccaaaat
      481 gctggggtct taatgtcagg gcctctcttt ttctcccact cctgccatta gctattactg
      541 ggttcacatt ctttaatgcc atccaggagg agcaaaaaat cccctccatt agtctgattt
      601 attcttcaaa tatgccatga caaattgctt taacaccaga cttattaaat tcttgtacac
      661 tcggagttgc ggggctggcg gaggcacagc tcggggctgc catcgccacg gccagcccgg
      721 gtggggaggc cggcctcatc cagctgtggc c
//
LOCUS       KCLA01002979            1018 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48489upu ultra-conserved element locus uce-5419,
            sequence.
ACCESSION   KCLA01002979
VERSION     KCLA01002979.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1018)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1018
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48489upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1018
                     /note="ultra-conserved element locus uce-5419"
BASE COUNT          257 a          212 c          247 g          302 t
ORIGIN      
        1 ggatgtgagc agagcccatg ggaaaaagcc cacagctttt taatcagtgt aaggaagtgt
       61 cagagcaaac tcctgtgttt gccctctctc tgcccatgac aacaaccatt ttcttcgaca
      121 gatgtagagt ttataaaaaa acaggtaacg tggttttcca taactttgtc ttcctttact
      181 gctgaagcag agctctttgc cgtggagaag aggtgagacg tgagagtggg tgtggggaag
      241 gaatagggag cccttcctta cgtgtttaat tcaagtccta ggtggagttt tagctgtcca
      301 acctttctta acacctgtgt aagcatttcc ttgtcgattg tccctcctaa cccctccttt
      361 ggtttgtaag gttgtgtcgt ttcactcctg aaactacagc gtgtttttct gggctcttgt
      421 ttgtaaagtt aactgactga acgttctgaa ctaaaacttg ctggtgacac tgacttttta
      481 ccacctaaaa ttggcagtga tcaccagacc agaaatggaa attggcaggt accactggat
      541 gtacaggagc tcaaggccac accggtacca tcatgtgcca gcattgagag gcaatattag
      601 tcctttgggg attcaaggta aataaagggc tgggtgaaag ggatatggag agttcagaaa
      661 tggtagtagc gtataatttt cactagtcct aatgatttaa gataaatgtc attctgtttc
      721 tcttgtatgt taaggctgta aggagcctgg tgctgctgta cgtgcacatg attgcaattc
      781 ggttgttaat gctccagaga cagttctgtg tggtggagga cacccccctt ttaactgtgc
      841 tgcgttactg cttcaaaact gtttacacaa gagatggcat agtatggatc cttgtgcagg
      901 agagtctgtc gccacaaatg cggacactga agcgcatctg attcactgct ctcccgcaat
      961 gtccatccta ggcaagattc catggctttg tttgcatttt tccctgcaaa gaagcagt
//
LOCUS       KCLA01002980             986 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48504upu ultra-conserved element locus uce-7409,
            sequence.
ACCESSION   KCLA01002980
VERSION     KCLA01002980.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 986)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..986
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48504upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>986
                     /note="ultra-conserved element locus uce-7409"
BASE COUNT          300 a          172 c          186 g          328 t
ORIGIN      
        1 ttgattgtct gataaacgtg gtacagcgta ctttgtctgg cttatggcat acttcttgat
       61 ggtagttact cattatagga gtaacctttg tttttttctg attttttttg taggctcagt
      121 gctgtatttg gaggagtcta ttgtcttcgt catcctgtgc attgccttgt agtggacaaa
      181 gaatctggac ggtaagtgta atataagtaa ccttctgttt atatacaaaa tgcagatgaa
      241 aaatgtccta agtcagttta aaagaaaatg attcttcaaa ggtcctcctt ggtattaaca
      301 acacatcaac cttgattaaa agtaatttgt gtataggtcc tccagaacac agaaagtggg
      361 tctagaatat agaaactaaa ttaatttccc tgtgatatta ctacagctcc tgatcaccca
      421 agcttggaag acaaatcatt tcagctgcca gggggctggt gatgagtgat gttagttttc
      481 cttgtggcct tacctactct aattgatttt catcagatga caacaaagcc ctctgttatt
      541 gcatttttaa aaatggagct cacctaaaga ctcatcagat taatctttgc tgataatgca
      601 tgtcactcca agagaaaaga ctttaatgag tttttaggta gattgttgtc ataaactatg
      661 ctgccctctt actccaggat aaattcttct acaacaatat caggcctgta ggtgggttta
      721 aagttaagtt aagaaaaatc aacccctagt ttttaatgta gaggcatttt tcacacctcc
      781 gtacatcttc atggtttcta ttacagacac tctatcagtt actagtcgaa ctttgtaaga
      841 ggccgtttgc agcttagtgt ctgcagttgg aaagttcaaa atgttgtata aacaaaaaaa
      901 aaaaagaggc tcaaaaatat gaagtaacat tttattagga aaattagtga actgatcaac
      961 ttcaagtgtt tacctggttg caccac
//
LOCUS       KCLA01002981             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48520upu ultra-conserved element locus uce-1830,
            sequence.
ACCESSION   KCLA01002981
VERSION     KCLA01002981.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48520upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-1830"
BASE COUNT          188 a          125 c          125 g          170 t
ORIGIN      
        1 caaaaaagtt tcctttaagg gaagagcacc cagccccacc tgcagcactc acccggggtg
       61 ctgcacagcc atcaattgtc cacggatcaa agatcagggc ttaaacctga gccaggctcc
      121 agtacacaga aaataagcgc tgaaacaatc ttgctgctgc ctgtttcact taaagacgat
      181 aagaaaatat tatcatagta ttttaaggta aatccagcct ttgcagagct gattgaggca
      241 agaattagac agtggttagg ggattatgaa aaacagcttc ctctacaggt caacagctaa
      301 tcagaattcc cgggagactt tccaaatttc tttcgcctta tgaataattt caccgacggc
      361 acaaaaccgg gcacgttatt tagagagagc cttttgatgt attttctctg aataagcacg
      421 ggtattcgag gatttctgct agttcagagc aacagggacc aacttattaa atgttcctgc
      481 tgcaatgcct gcaagctagc tgagattaat atcagcataa cctgttactt aattcattat
      541 ggggatacag gctaatttga tttgatatta ttttaataaa gttctgtgat atataagatt
      601 gtttcagg
//
LOCUS       KCLA01002982             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48536upu ultra-conserved element locus uce-2274,
            sequence.
ACCESSION   KCLA01002982
VERSION     KCLA01002982.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48536upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2274"
BASE COUNT          281 a          201 c          177 g          239 t
ORIGIN      
        1 aaaatgaaac tgaaggcccc taccatagca gcaagaacac atttctacga ctcagaagca
       61 aattaaagtt aaaaaattag atacagaaaa gagacatttt agccaagttt ttccacgtca
      121 gtaaagtctt acacaaaagg gtatcgtccc ctctcttatt tgtaaccaac gactgccttc
      181 attaatctca attatgctcc atttgctaag gaaccctcga caccctgaga gaaaccacct
      241 tcattttgca agggtaaggc tggcgtgaga gtttccaagt agagttgtac aatcacacgt
      301 ctggagcaag tcgtaacatt aaccacacag agtcgcttta actgtgggaa caacggggaa
      361 tttggaaggt tctggaagcg tgagctatga catccaactc ctattcctgc ctcgttgcct
      421 aactcttact acattagtat tgggcacgga gagaagatgg gaaagttaac atttatgaga
      481 gattaccatc agggtaatat tgctggttca tgccttctgg aggaccttgt ccaccatgac
      541 tgtattggtc cccataatag tcttcctggc ctgagtactg ctgtggtggg cctgaaaaac
      601 cacaaccagt caatacgtaa ataacttgtt tgctctgtta gaaagcctgc taatttctga
      661 tgtcagtatg aaaataacct ctcaaatgta ctccccaccc ctaccgtccc atttcagaca
      721 gcagttgtaa tgcagtttac tttaaaaata gctacctata tacacagttg tttggctgca
      781 cacatagcaa acttcattta tgagctcatt ttaggaacaa gcagactcaa gttgttaaaa
      841 gttaatcctc ctctaaaaga gagggaaaca tcagagcagc aagagtgcag aacacggt
//
LOCUS       KCLA01002983             604 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48552upu ultra-conserved element locus uce-7709,
            sequence.
ACCESSION   KCLA01002983
VERSION     KCLA01002983.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 604)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..604
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48552upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>604
                     /note="ultra-conserved element locus uce-7709"
BASE COUNT          181 a          111 c          111 g          201 t
ORIGIN      
        1 tgaattttcc acaaaggtca tctttaatac tgaatataac acttaacaca ctctgttcac
       61 atggtatcac agcttttttg acttattagt gaaaaacctg ggtattttct aaagacaacc
      121 tgaagagaca ggtggttttt aaaacataaa gtaatgatcg gcacagaagg catataaagt
      181 aaattgatca gtcttcttac cttgctcttt tatctgacga atttgcttca cagtttcttt
      241 caagattgca catttgtcag gtttaaagtt gaagttgtca atgtcgttaa aatttgcaaa
      301 aatcagctct gcaagttctt ctatgtattt attctcttgc tcacgattgc gtttctcatt
      361 gcttctttta gggctgaaag aggagtcata ttgaatgtca gtttacctgc tttctagcca
      421 gctcaaagat gatttacaat ggtgtaaaaa ttgccctctt gcactacaga aacatgggtt
      481 tctcaagtca aaaggcttcc tctgacccag ggaaagaagc attgaagaca tcactgaagc
      541 tcttccagct gtcatgttat gtttcaaaag gggcttggga tgtcaaattt gaaacagcag
      601 atta
//
LOCUS       KCLA01002984            1013 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48567upu ultra-conserved element locus uce-2008,
            sequence.
ACCESSION   KCLA01002984
VERSION     KCLA01002984.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48567upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1013
                     /note="ultra-conserved element locus uce-2008"
BASE COUNT          275 a          188 c          229 g          321 t
ORIGIN      
        1 agaggtcttt tccagcctct gtgattccgt ttttacaaac ctgaatgcca ccactcgaag
       61 tgagatgact tgtacttaaa gaagaacggc atcaggattg ttggtattac agacacttga
      121 gcttcttttt gggatgatgg gcatcttaaa tctttgtggt agtaatatac aaggtggtgt
      181 tgccagaaaa aaaacatgta gtaaataaac agcagctgca gtacaagaca ctcaatgtat
      241 tagaacccca gcttcagctc cattttgcag ttgaatgcag aacagttgtt ttgttgtgca
      301 tttctgtgtg ctctgtcagg tctgtgtttc tgggctgtga ggttccatta aaaaataaat
      361 aataatcaca gtccttgctt cccccacgta cactcatttt ctataatatg gtaatgatat
      421 cactgtagca gtaattacgg gtcatcttca tttctttcat ctctgctggt tgtgatggct
      481 tcattccttt gacagagaag atttggctct gggtgctgtg attattttgt taagcattat
      541 tcgaatagac aggagtaaga gaaattaatc aatccaaatg caattagcat catgtttaac
      601 ccagagatgg acatctcaag gtgaaacagc caggggagtt tcagacatta ttattcaatc
      661 cagtggctct tatctaaatt ataatcaaga gagtttttta ttggcttccc ggaaggaaga
      721 tgtaactctt tctttgcttt atggatcaaa gggattgggt ctttggcccc acagggtgtt
      781 gactgcaggc agctcttaca agtgggaggt gctgtaggac tttcctttaa tatagggttc
      841 accgagggaa gaacagtgag gttttgtgcc acgggtggtg tagagcacat ctttcagagc
      901 ttgaattcta gcagagttgc tgactccttt agtatacatc tgtacatcac tccttaccga
      961 ggctgtgacc attaaatcac agtgtgccta gaatgctggg aagcttgata aac
//
LOCUS       KCLA01002985             727 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48583upu ultra-conserved element locus uce-2265,
            sequence.
ACCESSION   KCLA01002985
VERSION     KCLA01002985.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 727)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..727
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48583upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>727
                     /note="ultra-conserved element locus uce-2265"
BASE COUNT          214 a          149 c          124 g          240 t
ORIGIN      
        1 tactgtttaa aaaaaaggct tgcaaaagca accctctcct aaatcatcca acaatcctac
       61 attgccaagg cagacatgga tactgctgtg cttaaaacta tttgcttaat tcactgctgt
      121 ttggattact acaaatgatt ttaaggtttc tttctcatgc attggaaagt tcccctgcta
      181 tttacttcct agccatttgc gtgcaaattc tgcctgtact gggatctctg ccattaaatt
      241 ttcttcacac tgaagggttt tctctgctcc tggcggggca aagtcatgac ccagaaaaaa
      301 attgattcat gaattctcag ggtgcaacta aagaagagag gaaatatgcc ttggctgagc
      361 tcctactagt gacaatttaa aacctgtaat tagtttggat tcaagccgca aaaggaatct
      421 gaatttaaaa tgcattaatt caaactgata tattaacttt aacaaagtag atcccttatt
      481 atgtagaatc attattacag tctgttttgc taactgttgg attccagact ttgttaactt
      541 acattttctt agaaaatgca agtaattgct agtgaacact ttatctgcac gatggttttc
      601 ctagcgaaac agaacttttt attggggtta gttagcttta acacctcagt tatagattct
      661 atttttgtaa attcccatca tccacaggct gcacaatggc tgaggccact taccccctgc
      721 tgctatc
//
LOCUS       KCLA01002986             557 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48598upu ultra-conserved element locus uce-1826,
            sequence.
ACCESSION   KCLA01002986
VERSION     KCLA01002986.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 557)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..557
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48598upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>557
                     /note="ultra-conserved element locus uce-1826"
BASE COUNT          205 a          103 c           91 g          158 t
ORIGIN      
        1 tatttataaa acagaaagct gccttttttc ctaccccagc ctcaaagaaa ctggtcacaa
       61 aaatggaaga gagtcttaac tttacactaa acatacagca ataaaatcct ttgaactaac
      121 caaaatgtga atagctttcg cagttttttg ttttttttac aagttttata attaacaaaa
      181 atataattct gtttttttta cccctcaaac tagggtaacc taatcaaggc aaaaaattaa
      241 gaaatggctt actgttaagc acaacacttg tacagtacta caaaatgcac tgtcactaac
      301 aaagacatta gcggcatgca gaagtgtcac cttcagaaac aaaagggtac aataaaagaa
      361 ctgctaaaag gcatttacat gtggggaaag gagaaaaagc tcacgatcca gtattgtctg
      421 atagtgttga agtctattta tccacatttt taatgggagc aggcacataa aatggctctg
      481 aaccatcagc tgctgtgtaa ttgcagttca tagaaagagt tcttcctttc cagagaactt
      541 caagctcaat gaaataa
//
LOCUS       KCLA01002987             331 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48614upu ultra-conserved element locus uce-2847,
            sequence.
ACCESSION   KCLA01002987
VERSION     KCLA01002987.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 331)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..331
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48614upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>331
                     /note="ultra-conserved element locus uce-2847"
BASE COUNT          107 a           54 c           52 g          118 t
ORIGIN      
        1 aaatgacagt gtgcactaca catgaacata gacaactgta taaaatattt aaataaagac
       61 agaaaagaac agaggaaacc aacagagcct ttggcagacc cagcctttgg gaatttagca
      121 gcttgagatt cattgcaaat ttcatcttta atgttatttt tagttcaata ttttgtagca
      181 ctcagaagta aatcttggtg tgatgtcttg caccaagctt gcactgcttc cttttctgat
      241 ttttttttaa agaaacctaa tatattttca atacaatcaa tttgtgacat gttttgtcat
      301 atttgttaaa gttaccctgt tttttcatgt a
//
LOCUS       KCLA01002988             499 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48630upu ultra-conserved element locus uce-3718,
            sequence.
ACCESSION   KCLA01002988
VERSION     KCLA01002988.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 499)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..499
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48630upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>499
                     /note="ultra-conserved element locus uce-3718"
BASE COUNT          151 a           95 c           98 g          155 t
ORIGIN      
        1 agatcagtgg ccaaggtaaa aaacatagcc aggctttctg gggcatagct gatgggatca
       61 tatgctgcac aaatccaaag tagcagcttt gttgtctgat ctgtaagttc aatattcatc
      121 cacatcaaaa atataatgta tggtgagttg agtgtatttt aagagttgtt cctttattcc
      181 tacagcaact ggaaaagatg gcaacctgcc ctaaaatagt aaccatcaat atatgatgtc
      241 ttttgcagct ctccttcctg atcaaataaa taatttgtaa ggttttgatg acaaaaggat
      301 gtatcctctg ttcagctctc acctgccagc actactgtgt gcaatctgac ttagagattt
      361 aagcacacaa attgtccttt ctgctgtttc ccctggaaac agggagccca gttgagaggt
      421 taataatttg ggtttgcagt gcatagttgg ccaaaaacaa aataattctc tatcttttga
      481 gtttaaaaac atgctgcta
//
LOCUS       KCLA01002989             621 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48645upu ultra-conserved element locus uce-5411,
            sequence.
ACCESSION   KCLA01002989
VERSION     KCLA01002989.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 621)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..621
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48645upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>621
                     /note="ultra-conserved element locus uce-5411"
BASE COUNT          196 a          131 c           97 g          197 t
ORIGIN      
        1 ctgtcttaat ttgcaagccc tgtccaccag ctcgttccag gaatacattc acagtgcaga
       61 tgctgtggtt ccattccagt cagaatagaa acatgctaca caactttgtc tttaattttt
      121 ggctaaataa acaggcaaat aaacagtaga tgaaactaat ggagagctta attatatcta
      181 tccatcaaac cctaaatttg cttcctttca gaatagcagg cactgtcttt acatccaaaa
      241 agactgatgg caagatacca agtttaaaat tctcccactg tcataggctg ttttactaat
      301 tatccagatt ccaaggcaat catgcaacca taatcattca cctcacgcct ggaaacataa
      361 gtcttgttct tttgatgaat atttataaga cagtgtaaag cagtctcttt tcccttcagg
      421 caagacaatt tggagttcat caatatgtat taccaaggac ttttataaaa ggcacttcaa
      481 aggaaattca tcaggcattc cttttgtctt gatttctgtt agactgatac ttccttttga
      541 caagtatcaa taaattatcc tctgatggct agaaacttga tgtcttattc agaaacttcc
      601 tcacacgaga aagtctggta t
//
LOCUS       KCLA01002990             457 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48660upu ultra-conserved element locus uce-3243,
            sequence.
ACCESSION   KCLA01002990
VERSION     KCLA01002990.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 457)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..457
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48660upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>457
                     /note="ultra-conserved element locus uce-3243"
BASE COUNT          160 a           86 c          101 g          110 t
ORIGIN      
        1 aatccaagat taaggaaaat tgtctaaaca gtttatctcc cagtaataag aaggcgtcac
       61 agtttaggaa cccagtgaat ggagcaattg tttaaacaca acaaaaaaat gccggcatcc
      121 agtagagatg aaatgagcat ttgagtaaaa tgaaggagca atttaaaagc ctttgagaaa
      181 aatcaataga atgccaggga agagcagcct ttttgagcat tgatgggccc ctaaagctct
      241 tcatacattg ttactgagtt tagcagcagg gaaaagaaaa ttacacagtt tgcaagggta
      301 ggcgggaatc aatactgtag ttagtagaga tgctatttca catctgactg gccagcggcc
      361 tgccttcacc agcctgtcct gatacctgtt tgttaacaag tcactaaggg ctgaaaaacc
      421 agatactctt cagggctgac acaaaaaata ggcactt
//
LOCUS       KCLA01002991            1005 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48676upu ultra-conserved element locus uce-7505,
            sequence.
ACCESSION   KCLA01002991
VERSION     KCLA01002991.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1005)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1005
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48676upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1005
                     /note="ultra-conserved element locus uce-7505"
BASE COUNT          271 a          192 c          204 g          338 t
ORIGIN      
        1 atctggtgtt atctccgagt gaaaggtttg gacaggatat agttctatca gcggtacagc
       61 ctcagagaag ttgacctatt gaaagctaga ggagaatggg tagtggctaa atatgactca
      121 aatgtggggc acaggatgca tacctggctc tctatcatct caagctgttt aacaattttg
      181 gaacattgct gttggaggag gtttgagttg gtgcagtttt tatagaacag tgcactgttg
      241 actgcactgt ttctcaagtc ttataaatat cctactaatg tcgaagtaat agtaaaagta
      301 ggtttaatgt ccagtctggt ttccagtaag gggatttttt gcaacttttt gcttaaagtt
      361 ttagataaac ctcgctctaa actacttagt agaaaaagct tgtgattgag tgctctgtat
      421 gcttgccttt ttgcttccac ctagaatcca gggccattac tttctgtaac catttcagtg
      481 agctgccata gttttcagtc tgtactgtca cctgatccaa gcatgcgcca aaatacccac
      541 cgtttctggc tactgtctgc tgaatctgct ttgcaaaccc ttagttctta agcttttgcc
      601 ttagccaaca ggcactcttc cagagtgtgc tggacacatg ccatcctgct tccctaactc
      661 ctctaattgt ttatgtaaat ccttagcttt actaaacttg taaatgctcc aatggcatcc
      721 ccatgtgaaa ttgtgtggct catgtgtcaa aacaggctgc ttgtgaaaat atttgtcaga
      781 agaatacgaa tgctacacat tgcactgcat tcagtgtttt gtaccaatct attattgcaa
      841 tgtcatggtg tttgatttta attgtagaca atcattttgt gttttaatat gcaaaggtaa
      901 gttcatgtaa actgtgaatg tacattctat gtaaacaaac tgattcttat ttttggcctc
      961 ttttctggag agaaaaagcc tcaataaaat gtcttaagca gagga
//
LOCUS       KCLA01002992             796 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48691upu ultra-conserved element locus uce-7550,
            sequence.
ACCESSION   KCLA01002992
VERSION     KCLA01002992.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 796)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..796
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48691upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>796
                     /note="ultra-conserved element locus uce-7550"
BASE COUNT          185 a          174 c          195 g          242 t
ORIGIN      
        1 cagatttcat ccttttactc attgaacaag tgaaggattc ctcttcactg ctccactttc
       61 tgctagccgt gagcatgtgc aatcctgcca aagaggatgc gctaacccca caaagctcgg
      121 ctaggatgct gctgttgtat ctccactggc cccactgctg ggtttatcag tattagcatt
      181 cctctatccc agtgttttaa gtatcctggt gataaacagc actgttacag catcctgtga
      241 gcacatctat ccctgtcctg taatgtgctg cataagtacc tgtgctgtag ggcatctcca
      301 gatgggagct ggttggaagg cttgtggttg caccctggca tgcagcactg gtgaagacca
      361 tggtccaagg agacaggtgg gcagcaggca tgaagttctg cctctcatct ttcactctag
      421 caagtatgaa ttctgtggag attaagttat aatttaaggc agtgaacatg tgctctactg
      481 acggctataa agattcaaat cataaagttt tacagtggaa cggtttctgt aaaagcatca
      541 ttagaaaggg ggaatcatgt ctttaattct tacgacttat ggggctgcct ggtttgtgtt
      601 ggttttagtg gtgcctggtg tggcatgctg gggtcctaac cccatctttc tgtttaaact
      661 cagacctttc ttccccaggg gtctgctatt ccagtgcttt gagaatgact gtttgctcca
      721 tcttgagctt gcaggtttgt ccaagaaaca ggaacaagat gtcagtgtag tgttagggtt
      781 gggttagtaa acccta
//
LOCUS       KCLA01002993             630 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48707upu ultra-conserved element locus uce-2506,
            sequence.
ACCESSION   KCLA01002993
VERSION     KCLA01002993.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 630)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..630
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48707upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>630
                     /note="ultra-conserved element locus uce-2506"
BASE COUNT          155 a          136 c          188 g          151 t
ORIGIN      
        1 tcggtgatgt ctgcgtgcgg aaaacccgaa ccctcttgcc gagggggtgg aagtgctgca
       61 gttccaccag gaaatattag cacgtgtaaa catttttcaa aaggcattgc atctccctgc
      121 gtgcgcgtgc gagtccgact ggatttgata gatgggtaac cagggagcaa ggacgggggc
      181 agcgtctgca gagagaaggg ggaaacggga gtgaaataaa gacaaactcg ctgtaattca
      241 aaacaaggtg aaatcagatt gtgtgctttg actaattttc ttattcaagt attgatccga
      301 tggctgctcc agagtctatt agcagtcagt cagtgaaaat atttcccacc gggggctctg
      361 acctgagacg ggggtgaatc tatagcaatt tgttcaaaca gaggaaagct tttccctctg
      421 atttgtattc caatttgcac ggtgtaggag ggggttcctg gcatgcaggc ttgctgggtg
      481 gtgttcctct agtgggaatt aagcacgagc caggtaatta gctgaagaaa acatctgact
      541 gaacgctcag atgggcaccc tccgcctgtc cctttggaat agctgggcac tgccccgggc
      601 ttggtgacca ggggcagcgg ggcagcccgt
//
LOCUS       KCLA01002994             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48738upu ultra-conserved element locus uce-1591,
            sequence.
ACCESSION   KCLA01002994
VERSION     KCLA01002994.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48738upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-1591"
BASE COUNT          305 a          229 c          182 g          277 t
ORIGIN      
        1 tcgccctcca cgtgggattc tgctctctgc acccagctct aaaacacaga gttgccaagc
       61 agaagcctat ttctgattaa aatctttgcc tcaggattct gtggggatta tttagcatag
      121 gaagatgttt tacatcaact caaaagttga tttgtacaag ctcagtagcc ttcaaagagt
      181 ttccatcgtt tagcatagac tgaattcaac gttgagacct gtgaaaataa atgaggatgt
      241 ttgttcttgg ctgcaacgtg aacgtgatgg agcctggtaa tagactggct ccctgctctc
      301 accattgctt tacatgatcg atggtttcct cacacccacg gtctgcagat gtatttatag
      361 aagtttaggc atcaagtcca gaagtttcat ataaaactac tgatccaagc gaaaccctat
      421 caaacagggc tctcttttat tccccttctg atcctaatgc agcttttaga taatgcaaat
      481 agatcacagg ccaaaatgat ctgacaagat aatggagctt tcattgctgc ctgattaact
      541 tggctgtagg gttccacctc gaccctttcg gcatgatggt cctaattaat aatgattact
      601 cccaaaatgt gcaaatggaa cgataaacga agaaccaact aattaactgc aaccatttct
      661 actaatcatt agttaacatc ccattttgtc atcattacac cgaagcgcat gcaaggacag
      721 ataaaacagg gtcagccttt ttgcccccat aaacctgaca gccatatttt ctttcccaat
      781 aaaagacaaa caagtaatta aacccagagc tgaagtaagg gccacaaaat tcgattactt
      841 caatattcca ccggtgggtg aaacagaacc atttttcaaa ataagtgctg aaatcatccc
      901 gctcctcagg ccaacttgag agctgaaatt gttttctttt ctatcagagc actgatgcac
      961 tacctcagcc tggaggaatg acatagaaaa acc
//
LOCUS       KCLA01002995             763 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48753upu ultra-conserved element locus uce-7757,
            sequence.
ACCESSION   KCLA01002995
VERSION     KCLA01002995.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 763)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..763
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48753upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>763
                     /note="ultra-conserved element locus uce-7757"
BASE COUNT          196 a          148 c          180 g          239 t
ORIGIN      
        1 cgttgtgaag tgcagagtgc cgagtgtgcg tgcacaccac agggtctgca caccatctct
       61 gcccccattt ggaggaagaa ctgggatggt tctccatctt tgtttgcagc agaaaagact
      121 caaggtgaga gagagaacaa atcctgtaag gcaattctgt cacttgcctc atcttcataa
      181 tctttcctta gctttctcta ccttctaacc ccagtattga tcgtgtcata ggctacagca
      241 gaccaaggca gggggctgaa aacctttcca aacagcagtt gccagtctgc ctgttgcagc
      301 ttgaagaaaa gcatgctgtg aaaacaatca gtgcatttgc tttagatcta agtgattcca
      361 actaggtcga tgcttcatgc tgatgtgttg aaaacattta aaaaatttct tggagtttga
      421 tttcagctga aacatttcag cgtgtgtctg gctctctgaa gttgtttttc tcactaatgt
      481 agcagttttt ccaccctagc acaaagcagt aaggaaactg ggcctcctgg ctggatgagt
      541 ttgttttaaa ggttttttat ggaaggaggg gatttgtttt ataagctgag gctgttgcaa
      601 attgacttca gaggtgtagt agtttatttc ttgaagggaa aaggaggtaa tcagctctag
      661 tgtgaatgag tgtagcttta cttaagctgc ttttgttccc tgtatttgaa ttcccattca
      721 aaggctgact agatcattca taaacacgtg agtcgtgttg ttt
//
LOCUS       KCLA01002996             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48784upu ultra-conserved element locus uce-6562,
            sequence.
ACCESSION   KCLA01002996
VERSION     KCLA01002996.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48784upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-6562"
BASE COUNT          246 a          172 c          150 g          239 t
ORIGIN      
        1 ggaggtggta gtagaagttc ccaggtagag ctggtgtccc attcactctg ttcctgggtt
       61 aacactgcgc ggctagaaat caaaatcctg tgcaaggttt ctgtttcgca gtcagcatta
      121 attttaccta ttggccaact tctgaaattt cttatcaact ttgatttcaa aagtactccc
      181 tccccgcttc cccaaactac atcggatatg ccatggacac agaaactcct gaacagttta
      241 gcaaagctgc cgttgacccc aatgccccct ttgcagaatg catagtttac aattcactta
      301 caaaataaag aagcaatgct gaccacatat gggacctttt ttttttttga aaaaagaaca
      361 aacaacctct tcttaaattc agtatcaaaa ttcacatttg cataataata catttcaagg
      421 ccattagaga ggaatgagag cgaagcaaag aaaactgcag agtctctcct ctctttgtct
      481 tcctgaatag agctgaggga tcccactgga gtttcttttc agagtgggaa ttacaaaggg
      541 ctacagcaac agctcttggt cttgtacacc tcgtgttttg ggtgggacga agaggtgaat
      601 tattaaaagc aaaaacaaat ggaaggagac actgcagatt cccatgttta gctacaaaca
      661 gcttcaaaga aacaaaaaat tacttcagat ttttttcttt ttaaacactt ctacctcacc
      721 atttcaaaaa ctcctttttt tcttcttgtg taataccctg ttcatttgaa tggcaacatt
      781 aagtgtgctg gaagttgaag ggttgaa
//
LOCUS       KCLA01002997             887 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48800upu ultra-conserved element locus uce-834,
            sequence.
ACCESSION   KCLA01002997
VERSION     KCLA01002997.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 887)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 887)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..887
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48800upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>887
                     /note="ultra-conserved element locus uce-834"
BASE COUNT          304 a          147 c          146 g          290 t
ORIGIN      
        1 ttttagctga cacaggcaga ctttgaaagg agtaaattca gcaatgtaac aacgaaatgc
       61 aaacttgtta aacgtggtgg caaaataaaa agcttcagtc agtatgatca gttcaagaaa
      121 aaaaaaagat agccagcaaa ctgtctatca tgtgatgaaa tttgacagta gggattatgg
      181 ctttgatgga ccagaacagc taatagaaga agctgacatt tttgaaaccc tgctaattaa
      241 gggttccttc cttaatatta aaataaagtc tttgtctggt ttttatggtt ggagaatcag
      301 gtgttttcat taatatatgc cagtcagtct taataagctt ggagggcaga ggaagttatt
      361 attgagtgac cttctacaaa ataagcatgt tgctaagggc tctaaccctg ccctgttcag
      421 actgatgaat ctcatttcca atgcaaaagc ttcacaagaa atccaagtat tctctgtgca
      481 atcacagaaa ataatccttg tgtctcttgt aatgtccaga attgccactt actatactcc
      541 tactgtacaa tgaatattac aatacatatt atttttctag cacaattgtc tacatttctg
      601 aattgcgaag aatagaaaaa cttattgtca agacacttgt attgaaaagt cagctcattt
      661 taatacttct caaatagtca tctaccctgt tcatgaatta taatgcacag aatacatctg
      721 acaatactag ctttggaaaa gagatatgtc tgtattatta catattcatt ttcaaataga
      781 tttcgaacag attttaaacc attcattgaa attcattgaa acgataaatt cacagttgga
      841 ttttgattga ctcttaatct aattttacat ttgataagtt ttcatct
//
LOCUS       KCLA01002998             787 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48816upu ultra-conserved element locus uce-4969,
            sequence.
ACCESSION   KCLA01002998
VERSION     KCLA01002998.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 787)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..787
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48816upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>787
                     /note="ultra-conserved element locus uce-4969"
BASE COUNT          241 a          161 c          136 g          249 t
ORIGIN      
        1 agtaagagaa aagatgtaaa aaagtgcaga gtattttgca actgaactct gaacttttct
       61 aacttatccc acggtatgga ctgacactaa gcaggttcca aacaaatctg aagatgttga
      121 acagcagaca gaaattggca gtcgaatttt caaagtggaa aactagaata gacttctatg
      181 ctccctcagc tgtttgaaac actatttcac ctgttttcat acttggcaaa caatatcttc
      241 tgattattag ttctttcctg tttacccttt tcttgcagca tttgatctaa aatcagtgct
      301 gactgcttaa actagacacc tggaacaatt tcagttgctt taccagactg ctgtcctttg
      361 tgagttatgc acttcgcaca ttcttgtaag gagaagttta ttttaccatt tcttgtgcaa
      421 catcatcagg agtttccttc tccagatcaa aagtaaactc aatggctcca ttatctttgg
      481 gttttccttt cagtttctta ggatcttcta cccagagtct taaggcaata gaggatttcc
      541 taccatggtc ttcttctgca agttccactc ttaccccagt atcttcagca aaaaaggcat
      601 ggcttaataa atctttaatt tcgtatctgc aagggataga aataatactc aaatgctaca
      661 attcttaagt aattccaaag aggttcatga caagaaactg ctgctaaaga caaaaacatt
      721 tacagtgtgt ttggtgctca gccataacag atctgtgtgc cacgagcaga cacagaaatg
      781 tagatta
//
LOCUS       KCLA01002999             665 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48832upu ultra-conserved element locus uce-7716,
            sequence.
ACCESSION   KCLA01002999
VERSION     KCLA01002999.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 665)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..665
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48832upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>665
                     /note="ultra-conserved element locus uce-7716"
BASE COUNT          187 a          149 c          128 g          201 t
ORIGIN      
        1 tttttttttt ctgagaattg ttaataaaat cacacttcta aaaaaaaaac ccaggatgga
       61 atgtaaatgc tgcactaatt taattacact ttggcgctgg gagacactaa tgtaaatatt
      121 ctggtgagta ggcctaagac acttgaagta attacttaaa ggcttccttt caaagaatct
      181 cccccttttt attaaatgcc ttttaacatt agcactttct tcctgacaaa ttaaatgaaa
      241 tttcattact ctccctgact taatggcatg aggctgcctg ctgcaagcgt gagttaaccc
      301 tctctggaca gaagatgcag agtttatgtg ttctggatgt tgccacgtgg cctgagcatc
      361 cccccaccct gccccctcaa acatggatgc atgttctgcc ttgtacccag tgtgtcagag
      421 tatctcagct atcagctcat ggatgtttgc agtccagaag aactgctagg cttgggatgg
      481 tatccagctc cgcttttccc aggctcaggg ttgaagctgg gagctgaacc tatagcaact
      541 tcaagagaca ttcccataaa attaaatcct tatgagactt tttgtaaaac ctgtagcaat
      601 ctaatatcag agtcacactt actaggatcg ttgaaccggt agattaagat tccagctctt
      661 cacga
//
LOCUS       KCLA01003000            1176 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48848upu ultra-conserved element locus uce-1127,
            sequence.
ACCESSION   KCLA01003000
VERSION     KCLA01003000.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1176)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1176)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1176
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1176
                     /note="ultra-conserved element locus uce-1127"
BASE COUNT          314 a          268 c          226 g          368 t
ORIGIN      
        1 tctctttctg caatccacca gctacttaag ttgctatcga aaggcttcgt tatgaaactc
       61 ataaacaaaa tggttttacg ggagcatacg cacagaggga atcaatgttc ttgtcaactg
      121 tcacgttttg cacacctctg catttaaaac atgacaaggc tttgtgctgc catctctgta
      181 agtcttccat tagagtaccc cagatttact gtgttctgag agttaagcta cacaatagtt
      241 aaaagttcat ttctttcctg ctcctaaaaa acaaactgaa gaaggaattt aacctcatat
      301 cctcactctg aaattagctc tattgtcaaa agatgtcagc tgtatcctga tttcaagaat
      361 tccatgttgg aattaagtag catttttgaa accattgtgt tacttcaaac agagctgtaa
      421 tggtccctcg gcaaaccatt ttcagaagtc ttgtgtaagt aagataaaaa gacaccattt
      481 ctgaagagat gcttttatgg gctaggtcag agtgctcttt ccatgttgtt cattcccagc
      541 tgaatttcct aatagcctat ctcctcagct aacagatgcc cagcctcatg tcagaaccag
      601 atcgagccac cactgagatg atatccagct cctttcttat tgagccgttt ccctagcaga
      661 tggtgcaatg ctgcaggcac actccttcct gttaattacc agcctttgct acagatggaa
      721 atgtcagtca gcctcacagg tcctggttcc tgccattgcc tcagtccata gccctctacc
      781 taggcaagat gctgccaaca cacaccatgt gttttgtgac tgctgactag gcaggcaaca
      841 aaaaacaact tagttcatga atattcatgc aggaatgttt agagttctgt tcatctgcag
      901 tgcttataga tctgcttaaa ggagattgca ctttctgagg agccctgtgc cccttgttct
      961 gctgtggtgt gggcagatga gttatcaaag tgtgttgcta tagtaaccta taaagggcta
     1021 ttaaatgtct gtcctttgga gacttctgta ggctgtttct ggctgccatt tttccatacc
     1081 ttaggtgccc tttaattatt cttgtcctgc aataacagac cgatagtcac caggctgaac
     1141 tgattatcta ataactgttg attttcatta aagcct
//
LOCUS       KCLA01003001             211 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48863upu ultra-conserved element locus uce-516,
            sequence.
ACCESSION   KCLA01003001
VERSION     KCLA01003001.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 211)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 211)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..211
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>211
                     /note="ultra-conserved element locus uce-516"
BASE COUNT           69 a           45 c           32 g           65 t
ORIGIN      
        1 gtcccagtaa ttaccgtgac cagcctaata aaaactgcta caaaacgaag gtcaactagc
       61 agttagaagt gttcattttc atttcaatgt attcatctct ggctcctaat ggcctcattt
      121 tctcctatgc tctttaataa ataccactga attacaggtt aaatagctaa attaaattat
      181 tgcaattaca gcatgcggag cactgaaact g
//
LOCUS       KCLA01003002             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48879upu ultra-conserved element locus uce-3660,
            sequence.
ACCESSION   KCLA01003002
VERSION     KCLA01003002.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48879upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-3660"
BASE COUNT          150 a          107 c           77 g          145 t
ORIGIN      
        1 ctaagacctg aggaaccagc ctcataaatt atccatttat aacgtttctt cgtttcagct
       61 gaaacaatgc tcccggttca ttttctttta cactttgtct cctggcccga gtgaccacct
      121 actttgttgt ccaaatttct cgtgcagctc gaaccctaca atgcgtaatc tcagtagggt
      181 tatcagttat gtcatgcatt ttacagcctc caatcagcgt agtgggaaac aacgttttca
      241 tttaatacca ggagaaacag tggaagtcag cgattgatac caacacaatg atgggaaaaa
      301 gtgtccagag gtgctactca cataatctca ctttacaaca tcttgaaaat tcaatagaaa
      361 ggactttgct aacaatacca gaatgacata ctgctgatta ttgttcctaa agctcttaac
      421 aatgagaaag ctctctaaat atatctcaac aaaaaacata taacagtttg tttcttctt
//
LOCUS       KCLA01003003             367 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48895upu ultra-conserved element locus uce-6665,
            sequence.
ACCESSION   KCLA01003003
VERSION     KCLA01003003.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 367)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..367
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48895upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>367
                     /note="ultra-conserved element locus uce-6665"
BASE COUNT          115 a           59 c           60 g          133 t
ORIGIN      
        1 ttttgaacaa tgagattaaa agttgtttga agaataatgt tttcctaagt tttagctgac
       61 attcaatttt aatgactttt taaacaaagt aactattaac tgtgcatcgt tttatagttt
      121 cctgatgtct gacaggtgtt tttgcccaag tgggaagcgg atgctaataa cattttccct
      181 aatagctcat aaataataag catttagcat tttcctttgt atacggctct gtcaatagcc
      241 aatttacttt tcagaagcca caacgttttc ctgtcaatca gttttagcct cgggcacttt
      301 ttggtgatta gaaacccctt agagagagtg aactccaaat tagttttaaa taaaaaataa
      361 gaatatt
//
LOCUS       KCLA01003004             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48910upu ultra-conserved element locus uce-6013,
            sequence.
ACCESSION   KCLA01003004
VERSION     KCLA01003004.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48910upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-6013"
BASE COUNT          231 a          170 c          178 g          249 t
ORIGIN      
        1 agcaaagggt tggtgtctaa gatctccatt tcaaccctaa gatcatgtgt ggtaacttca
       61 tgagagggct tgcttaaact accagacttt tctaagtgtc ttaattacat cattcctatg
      121 tcatttcatt ataactgtat ttaaaacagt aataaaatta aattacaccc aattaaactt
      181 tctctaaagg taattctgtg aacagttcaa cttctctacg tagccattag atttcatact
      241 gggaaaatct aactgcatca ttctgcatat acacccagaa ggaggatggg gagagagggg
      301 aaccccatcc cagaggtgtt ggagatgtac agtggtgctc tctgtcagtt gtagtaactt
      361 gtagacaaca aaacaggtca gacgaagttc aagcaatgtg tcaggtcaga agctgtcccc
      421 caaagcagaa taaagctagt gatgttatag gcattactta cggtagatca ggcagcactt
      481 tgacttggat ctgcttatca ccatttcgca tctgtaatgc cctttgagac ttggggcacg
      541 gccattgccc tattttcttt ttcttgtgtt tatgtctcgt ctcgttcatc actagctctt
      601 gcaaagcggg aaaataggaa gagacctgtt gcaaaagcaa agttttacat tactgagtat
      661 tcagctcatt ggtcgctctt tgtgaggagc ggttatgcac cacgcacggc acagggcatc
      721 tgagtttttg agaatatgat ccatcagtga ctgcacagac agccgacttc taaacaattt
      781 tgtcttcttg ccggttgctc tgcacattgg tatcagaggt gagtgaat
//
LOCUS       KCLA01003005             242 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48924upu ultra-conserved element locus uce-5322,
            sequence.
ACCESSION   KCLA01003005
VERSION     KCLA01003005.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 242)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..242
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48924upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>242
                     /note="ultra-conserved element locus uce-5322"
BASE COUNT           62 a           36 c           50 g           94 t
ORIGIN      
        1 catttctagt caaacactga caaaagatgt tcagattgca gtgtgagatg gtttctatgg
       61 ttacagttgt ttcctagcat tttagtgaca tcttttgtga gcattggctg cttcacttat
      121 ttgtcactaa tgtatgtgta gaactatagt taatagcctt gggcggacaa tttttttttc
      181 tctgaatggt ggtattgttt tttagcagca tttttcaata aggtgacaat gcactagaat
      241 ac
//
LOCUS       KCLA01003006             650 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48954upu ultra-conserved element locus uce-1203,
            sequence.
ACCESSION   KCLA01003006
VERSION     KCLA01003006.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 650)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..650
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48954upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>650
                     /note="ultra-conserved element locus uce-1203"
BASE COUNT          218 a          117 c          149 g          166 t
ORIGIN      
        1 gtaaactata ggtttgatag tagaagtggt cccaattgga acagaggatt tgaacaagat
       61 gcccatagag attttgatga ccgcagaaga ccctgggaaa gacagaggga tagggatgac
      121 agagatttta atttttgcag agaaattaat gggaacaggt ttggaagaga cagaatgtca
      181 aacaactgga tcccccctcc acatccacgg gtttttgaat attttgatgg ggccacttcc
      241 caacgcaaag ctgatagtgt gccccaggta aatggtgaaa atacagagac agaaagtcag
      301 ccacccactg cacaggtgca ggatgatcca gaactgtatg aaaaactgtc atcttccgcc
      361 gagataaaca aagagaagag tgacacagaa gctgatatag aaagtgaacc agtggtagaa
      421 agcacagaaa ctgaggggac ataatcatca ctcagtaggt aaaagatacc ttttgtaaag
      481 ttgtcatctc tctgtactag ataaatggct gactggaccg tagcagttca cttttgtctg
      541 ccagaattaa gttaatctga tgttcatgtt catctttcac ttaaataact gtacaactga
      601 cctgtataga acactgttct taatttgaat atggtaggta aacttctttt
//
LOCUS       KCLA01003007             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48970upu ultra-conserved element locus uce-2511,
            sequence.
ACCESSION   KCLA01003007
VERSION     KCLA01003007.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-2511"
BASE COUNT          215 a          141 c          199 g          286 t
ORIGIN      
        1 ccttctccca aagaattatt gaagaaatta attgtgactt tcaaacgtta aacttttctg
       61 tgtaattttc aaaggtcgaa tttctttaat tctggttttg gccttgttta tgttgtattt
      121 cagccagcat tttccagtgc acagtagtga ctgttttttc ctttcctccc tgtttttgtt
      181 cactgtaaac tgttccttgc tgtggttaca tagacaaata tagcagagaa ctcttttctg
      241 ggagaaattc tgtgcatttc ttaaccattt ttgggaagga ttgatctatc tgtgagagag
      301 ggagactgtg gctgtaaatt gaagtgacat catatgtttt atttccattg atctacattt
      361 agactcgagc caggataaaa ggaaatggta tcagggagga agtatgctcg tttaggcaca
      421 gatcccagtg tgataatgga gtaataatag aaattgcgcc accgtcaatc agttgctgca
      481 ttagtctgag cagatttccc ctctaaggag gctttcaatg acttcattca agtgcaggca
      541 ggagcaaatg ggatattgag cataccagct gtactatagt gatttgtgtc caggcttaga
      601 agcgcagtgc aagtgctggt gctgtggagg ctcaagtaga tatgtcagtg tcacatgtga
      661 tggctgtgaa aggtcagtag tcaaatgttt cagtagcatt tttcatagta taaaggatga
      721 gtctggcatt tgttgcattt gttaatgtag gaattgataa atacacccct ttgtgtgggt
      781 ggtctcctgg gatgtgaggc tgatgacctg tgaagctgct ataccaggtc tctgttttct
      841 t
//
LOCUS       KCLA01003008            1019 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 48986upu ultra-conserved element locus uce-7504,
            sequence.
ACCESSION   KCLA01003008
VERSION     KCLA01003008.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1019)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1019
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="48986upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1019
                     /note="ultra-conserved element locus uce-7504"
BASE COUNT          325 a          185 c          177 g          332 t
ORIGIN      
        1 acaatttgcc aaatcctact ttctcagtgt ttttctgatt ttagttcagt atttttctta
       61 attctctctc aataaacttt atggaccata tttgggctaa caaaaccagg tacaactctg
      121 ctaaagttaa acgaattgtt cttgcttacc tcaatgataa tcttggcttt tcatggtgca
      181 ttagagaaga gaaaaagcta gcaaagtttt tacatggtca tgcttcatat atacttcatc
      241 ttaaaacatc tacttttggt ttttaattgt agtggtgttc tgtaaagaaa tacgacctta
      301 tagggcattt tcaggaatag aacagtctat atattaaaag gcagcaaatg attcataact
      361 gcttagcggt caggcctgtg gggccatgct tcccatgtga aatttttttc tgcattgcaa
      421 actcttacat taaattgtga taaatgaaga gcggaggcta ttcatacaaa tcaatgactt
      481 tagtgtatgt gtcattagcc tgagagatgc aggcagcggt cactactata aatcatgtga
      541 tgatctgctg tctgcgactc gatgcaagca agcagatgca ttaggaaggt taaagaatga
      601 aattaatctg tgcatttccc tccctttagt cacctggtca tacggaaaga attaaaatca
      661 catgatccaa agttaagcca gctacagaac actaaattgg ctaacttaga tgtcaccttt
      721 caacttaaag ttaattaaat attaatggga ttaatttatt catcaccaca tgaaacataa
      781 aatatataga ataagtaaaa tctaccagta ctcctcacag aggagttgat attattaatt
      841 gcttttaatg cagactgtgg catgagacca catgtaagag atcaagcacg ctacaaaatg
      901 tgctctgata cttttaagtg cagcatattt ctctcttcac attttataaa tccagtgttt
      961 agtaacccat ggccatgctc ttcatcccag tatcttggag tagctatgaa tatgagtca
//
LOCUS       KCLA01003009             939 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49001upu ultra-conserved element locus uce-3856,
            sequence.
ACCESSION   KCLA01003009
VERSION     KCLA01003009.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49001upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>939
                     /note="ultra-conserved element locus uce-3856"
BASE COUNT          239 a          262 c          244 g          194 t
ORIGIN      
        1 tgtgcgaggg aatagctgtc ctgagagcag accacgacgg ctcccaggaa ggtgtttctc
       61 aggaacatgt cccgattcca ccccgggggg aaacatcgct cccgatttca ataaagcagc
      121 aatcctccaa tgactcccca aattctgcat gagaaacaaa cccccgttgc tccgtgcctc
      181 agggtgattt gatgactgtt atctcaacga gagcaggggg agcaattcac agtctggatg
      241 agaccgcgca acagccggtt gattaacagc tagaacagcg gccacaggca gcgctgaaca
      301 cgccctgccc agctacggtc acccttgctc tgcgccaatc cagctgtgag atgacggata
      361 gagagtaaac gtaaagccac caacctcaga gtgctttcgc caaatgtcta tgttcttgcg
      421 ctgggctttg gagaaatggt cccaagcttt ttgtctggtg gaagcgttga aaacggcgac
      481 aatctgctcg actttggtga acaaggaagt caaacaagac aagcaattta tgttgtgatc
      541 actatagaga agcaaagcaa agacactagg agtctatgga tgatgccatt actgaaacaa
      601 catcatccat atccatccaa cggcgtgtct ttcgtactta catggcagca acgttggagt
      661 tgtctcccct caagtctgcc tccgtaactt cagcctacgc cactccggac cacaaccagg
      721 cacgcagccg cttccctgcg aggtgtgctc cccccctctg ccaccccgtg tttggctgta
      781 ggtgtgtgac tgcagcagtg actcccgaga cgcaaacctg gcacgggttc ccctgaggca
      841 gctgcgcaca gatgagcggg cccttcagaa aggacaggca gccccctctg aagagtggat
      901 ggggggtttg ccagcagatg ggaagacagc aactatata
//
LOCUS       KCLA01003010             954 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49016upu ultra-conserved element locus uce-3783,
            sequence.
ACCESSION   KCLA01003010
VERSION     KCLA01003010.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 954)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 954)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..954
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49016upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>954
                     /note="ultra-conserved element locus uce-3783"
BASE COUNT          307 a          164 c          164 g          319 t
ORIGIN      
        1 gccagtcaaa gaagctttta catacttagg ttacatcaaa aatgtacaaa tattagtaac
       61 cccgctttat tgtgtacaag gttatgaagg caaaccaaat taaggaagaa tattaaaaaa
      121 atctttgaaa taatgaagga gtggcaactg ctgcctcatt ttaatgttct ggaatcactg
      181 aaagtgagga aattactgtt gcttttattg ggtggatttt agtttgtaac atgttgatat
      241 ttatgcagct caattgtcca catcataggc agcctcacag agatctatgc agtcccttct
      301 ttagtttaga tacttatgtt ttaaatagcc tgaagtagct aaatgccaat gctacatgca
      361 acttcatata aagacagaaa gaaggtgctc aagcactggt tcttctcatc cttccaggaa
      421 agagttaaca caaagaaata aaatcagata tgtgtagcct ccagacgtcc attaaagtgc
      481 agaatgctgt tttctatcac agattatatg ccagatgttc aaactatctc taatcattgc
      541 agatgtaatg gagtagaatg ttgcagtttg tgagtttact ggcattaatt ctgtatactg
      601 cacaagggaa aagattttaa atatataatt atatctcatt aatactcagg ttttatttcc
      661 tttcaatgga acaggactta ttaaagcaac catttaccgc atgttttctt ttagtgtttg
      721 gccccagcat agtcctgtgt gcattgtacg tgtaaatatg tggtaatcta agtatagaga
      781 aatgtacact actgtatatg attccactgg tagacacccc tactttttat ttgcatggga
      841 tctttttcct tgtcaattta cattataaaa acatcttact tacacagtac tgtgctaacc
      901 acatgctatc ctacttttta tggaacaccg aaaaaatgta tcttttaatg atat
//
LOCUS       KCLA01003011            1007 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49031upu ultra-conserved element locus uce-6635,
            sequence.
ACCESSION   KCLA01003011
VERSION     KCLA01003011.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1007)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1007
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49031upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1007
                     /note="ultra-conserved element locus uce-6635"
BASE COUNT          241 a          266 c          207 g          293 t
ORIGIN      
        1 agtccagttc tgctgtgctg gactgctgct gcctttacat ctttcctatc caacttcccc
       61 ctccctgttt cttcttatga gggggggggg tagggatata tgaatgggtc tcactcctct
      121 aaaagggctt tttcattacc actacactgg ctctcggccc ccacttttta atcataatac
      181 atcagcctgc tctccattta cttaagcttt tcgatgtcag ggaaaagcac atttttattt
      241 ggcacaccta ttttcaaatc acgggcacgc tgcccctgct cattattaat aaatacactt
      301 cgatttatca caagctctgt ttgagtgcca cagggagcct ggggcaaaag gagacaaatt
      361 cttttcttaa gttgttctga aaggtgctgg gcttcccgac cctcaccccc attaacccag
      421 cacagctagt gcgctcctac tgggagctcc acggcttgtg cagcggcaaa cttggactga
      481 tcttgtgcca tctcaatata tttgttcatt atcttgcgca cacacagaag catttggaaa
      541 tgtactcggg gcacaggcca aattgaatca tctgccttca ttttccacac gatctgaagc
      601 tacagctgct acaacaggct gtgggatttt tattttcctt ccttaacagt ttttttttct
      661 tgctcttaaa gtcacagcag tcgattctaa acctcttgct gttgcctgag tttgtgtctg
      721 tttttcacca aacgagtctt gcatacacac atggtgggaa aagaaatccc caaccacctc
      781 tctccacact gctctgaagg ccagacagaa agcagcacgc tcagggagag acatattaaa
      841 atattcatct ctgagatgcc tgttctggtg gctcagatgg gtctattgat cccctaatcc
      901 tctcacctct gccagtgaat aggcaccggt aggagaggca cccagcaact tggtgctact
      961 cttaggagca gcgaatggtg ccatgaaaac aaaggcaccc ttcgtga
//
LOCUS       KCLA01003012            1020 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49047upu ultra-conserved element locus uce-4114,
            sequence.
ACCESSION   KCLA01003012
VERSION     KCLA01003012.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1020
                     /note="ultra-conserved element locus uce-4114"
BASE COUNT          314 a          202 c          194 g          310 t
ORIGIN      
        1 attggtagga gacctgtgtt agaacttgta ttaagatttc catgtgttct gtgctgcttg
       61 gttatctaag ttgcttcagt ctcatgactg gtgcttattt taccataaaa attacagttc
      121 aaaacctatc atggtcctgg gcatttctgc catggcagag cccatgtttt caggaaatac
      181 ataaatagaa aatcttcgca ttctccctcc ccaacactgt tcagtttgca tttgttctaa
      241 acgtagatta acaataagac tcattttctt ctagaacaag acccaggctt gaggaatgat
      301 cctcctactc ccctaaccac taaagcattt gaaagcttac aagtggctgg acatgagacc
      361 cctgattgca gtgcctacat gattcatgat tgatgggtct aatgaaatta ccaagttttc
      421 cttcctattt ctggcattag tcaagacttc atgtccaaag attattccac cagacatgtt
      481 ctgcggatgt gatgggatta gccaaatttc aaagcttatt tttgacctcc agcagaaaat
      541 tgagcacata cgctattgaa gccaactggg actatagaac atcaagttga ttcatcaaat
      601 tagctcaaac tgcatgactg gctatggaag ttgtcagcta taaacctgtc aaaaagccat
      661 cagctttaat gttaaataga gacacaaagt aatgttgttc agaatttgac atttgttgga
      721 cttgcgcctg ctaaaggatg ctatctgctt tgtttcctct tagaaaaaaa tgtagtctga
      781 aatacagtct tggtagattg ctgtagagaa aaggtagaaa acccagttgt gagaaatacc
      841 agttttaaca aagtaggtac gtctgcactg cctctgactc gcagtgtcga ctaataccaa
      901 aataactgca tttcacaaag agtcagaaat cttcccagca gttacaatgt gcaaatggag
      961 tatatttgac tgttgactgt aatgggtttt attaaaaaaa ttcgagtcaa acagcacgaa
//
LOCUS       KCLA01003013             678 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49063upu ultra-conserved element locus uce-90,
            sequence.
ACCESSION   KCLA01003013
VERSION     KCLA01003013.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 678)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..678
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>678
                     /note="ultra-conserved element locus uce-90"
BASE COUNT          192 a          163 c          136 g          187 t
ORIGIN      
        1 ggaacttcgc tcttctcagc ttaaattcag cctcttagag agttgcctaa tatccctccg
       61 tggctcccga ttgaactctc cttcctctga aagcaaacag cccggtgttt ggaaacgggg
      121 ccggtgcttt agctgtcact acaaaacacc cttacccccc cctctttatt cccaacatct
      181 gaagttacag aacgaattgc cattagcggc agctcagagc ctgaggtcaa agaaaagaca
      241 aaacctaaca aagaaattga tcctggggca cctatggaat tctataatca gagccatatt
      301 ccagacacca gcatcctcag caaatcgcct ctgaaatgta aaaatttaat ttgtcaacat
      361 gtttacatca tatcttcaat cactgtccag gcagtggcac tgtgtgggga cacggggctg
      421 gagacgccag gcacactgaa atgagaagac gtggactgat tagagttcgc tctgggtaga
      481 attgtctcgg acagctcagc aatcagatta ttaactctga taccagatac tctatctctt
      541 cgctgggatt agcatgaaaa ttttgatatg gatcgataag caatctttcc tttataaaga
      601 atctctgcaa gcttcattaa tctgtgtgta tgtttatgtc aaggaattaa gacatcttga
      661 ttactgctgg ttctcctc
//
LOCUS       KCLA01003014             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49079upu ultra-conserved element locus uce-784,
            sequence.
ACCESSION   KCLA01003014
VERSION     KCLA01003014.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49079upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-784"
BASE COUNT          205 a          171 c          173 g          223 t
ORIGIN      
        1 cagggtggag ggggaacgga cagctgaggg cacatcaggt aatgtggcaa aatcatttgg
       61 gggcagcaag gagtgaggct aaaattaaag gttcgagtgt ataaggagag aagttttatg
      121 cctgagtgct tgttttgaac tgtgacccag ggtttggctg ggcactaacc acagcatgcc
      181 tcatcagctc ctgtcactgg tgccctgggg tgttcctcca gcagggagtc tgctccagag
      241 ctgcatcctc cagcaccagc tcactcacac actaccgaga ccctgccgag aaatcagcat
      301 gcaacccaag aaagcatcct ttcctctgga ataaaaatta atattacttg tcatatttca
      361 tgtctgagct cttttcatgc tttatcctct ggtaatgagg gctaaattac caatattagt
      421 agattttcat ggctagcaca gaaagagctg ttaccagaat aaatgtttgc attgcttctg
      481 ttggacacag gctttgctaa tgcagctttg ctaattattt ctaaataggc aataatctgc
      541 atcccctagt gctgggtagt ggattggcca cgtacctgct atttccctta tttacatgtt
      601 ttacaacttt atcaactaca ctaattacac tctgaacact gtttaaaatt ttctgttaat
      661 agagatacaa tgatgcacca gaggatgtgt atttatgcca taattacgcc tctgttcctg
      721 cgatgcagtc tccaattagc tgtcgacggt ggcacaagca gctgcctgat at
//
LOCUS       KCLA01003015             497 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49095upu ultra-conserved element locus uce-3250,
            sequence.
ACCESSION   KCLA01003015
VERSION     KCLA01003015.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 497)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..497
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49095upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>497
                     /note="ultra-conserved element locus uce-3250"
BASE COUNT          125 a          129 c          130 g          113 t
ORIGIN      
        1 ttctatggtt ctatgagcaa aacctcaaag aaacagggga gtcacctttt ccagccaaaa
       61 ttccctgaga aaccaattcc cacccaacag ctccctggat ctgagctgaa gagaaagttt
      121 tattcccctt gtgcatgatg tgagtgagcc ctgaccttca gaagggaaca gaagggatcc
      181 tctccgcccc gagggcagag ttgtcagcga aatgtctgtc ttccttaata atttcaagcc
      241 gggtgacagg ggacagggca ttttgctccg aacgaacgca ctgtaaaacc tgtcagatgg
      301 gatttgtctc aaggagcagc atccccagcc gctcggggtc agcatcccag gcagctctga
      361 cctggggagc agcacctttt cttctctcag ccctaaacca gatggtttgg tcttgtgcag
      421 agcttgggct tggaccgtaa ccaaaccaaa ctgggagggg gaacacacag ggggtagctc
      481 tgatgctctg tatgatg
//
LOCUS       KCLA01003016             654 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49111upu ultra-conserved element locus uce-6079,
            sequence.
ACCESSION   KCLA01003016
VERSION     KCLA01003016.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 654)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..654
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49111upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>654
                     /note="ultra-conserved element locus uce-6079"
BASE COUNT          201 a          143 c          117 g          193 t
ORIGIN      
        1 aggagaaaaa aaaaaaaagg taaatatttc aaggccattc ctttaattat ttaaaattat
       61 tgagtgtcaa ccaaaacagc aaataacata ttgacttata tatgggcata tacataagaa
      121 cttaccattt tcactgtcgg acttgttttc atgttcggta tcagtcagag tgagggctga
      181 gttggaacgg ctcgagagac aggaactgcg ccctgatttg acccccctgc cccaaagtct
      241 catggcatgc tctggagaca tcactccttc attttcagta tcagcatctg accctgcact
      301 gatagagtaa cctctgtggg ggagacccat ttccgcacaa aatgccagtc ctcgacgagt
      361 tgctggttca caaactccta actgccttag ggtaaaattc tgtcctgatt agaggaaaaa
      421 aaaataacaa aaagtgagaa ttttttttta ttttttttat aaaagtctag aagtaacaac
      481 tcttcatgtg tataattttc ccaggtatca cacacaatgt tctgtcaaaa ctccgcaaat
      541 attacaatca agtggattct tttgtctcca gctccccgag gtgccccttt tcattcatac
      601 tacacctcag cactgttttg tcaactgctt aagcatatga aaagtgctcc tagg
//
LOCUS       KCLA01003017            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49127upu ultra-conserved element locus uce-3060,
            sequence.
ACCESSION   KCLA01003017
VERSION     KCLA01003017.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49127upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-3060"
BASE COUNT          250 a          218 c          223 g          330 t
ORIGIN      
        1 gaaaataaat ggaaaattag cccgataaag tctagtaaat ggaagaatgg gatggtcttt
       61 gtctcctttg gccttcttgg tctgaactgc gacagctaca cattctatgc caagggggca
      121 agtgaaactt gtcgtattaa cctgttcttg ctgttctttt tctttctacc ttttgaaagc
      181 tccgagtaaa gcagtatctg ggggcagtca tgttcaagga ctgttggagg gttttttttt
      241 tcctggggat ctgtctgtct ctgtgctgca cacttgtgtg gtagttgcag agagtaactg
      301 gagattaata ttctggaaac cacaatttat gatagctgcg atcgcacaag tatcagctga
      361 caatactgtg tcacgtttta tttcaaagaa atagcggtaa caatggctta tagtaataac
      421 agtaatgctc cttcccctgg gggaaaggca gagaatgcta tcttgccaca tgatctcatt
      481 tcttttaagc tttgcactaa ccgctgacat atcacataaa tgcctccttt attacctgcc
      541 agtgattgtc ttctgtgttg ggaatagcct ccggaaccca cgtccacatg ccagcaaagt
      601 gctttgctcg ctccatgtga atttgtctct gtctggtgct ccgtgaggcc cctttataca
      661 cctgagcatc ctgactaact tgggtagcct caattacacc gcctgtgaaa ggcctttgtt
      721 caggtgcctc tgtggagctg gggctgggag ttggcacaag ctggggctat gtttctatat
      781 ttgccaagta agtaatttac cattttagtt aggggttgta agttgtatcc agctagtaat
      841 gtagcctggc cacacatctc tgcaaagatc ctggtcctta tcttttcagt tgattttaaa
      901 caaaagccgc attcagtcac atcagatcct ttatcagctt gctaggagat acaatagtta
      961 tttttcaaat tgcctctctc tttccagttt tcaatagacc tgtatagata actttcagtc
     1021 a
//
LOCUS       KCLA01003018             945 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49142upu ultra-conserved element locus uce-7027,
            sequence.
ACCESSION   KCLA01003018
VERSION     KCLA01003018.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 945)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..945
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49142upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>945
                     /note="ultra-conserved element locus uce-7027"
BASE COUNT          258 a          208 c          214 g          265 t
ORIGIN      
        1 gaagtctctc agcctttcct cataatggag ctgttccact tccttcatca acttcgttgc
       61 tctacactgg acaggctgca gcagcaccca cacaaggtgc agcgtagtgc acgtggttca
      121 tgtgctttgt atacacagca gctgctgatt atatctcatt caccagcata ctagcccaaa
      181 ggcaggtagt tgccattgtg atgggttaat ttcaaagggg ttctgttagc aaacagaaat
      241 aaatcagaaa aatgcctaag tttgttccag cctccccccc tgctctgggg agcagctact
      301 cagctcttca gcaagaattc aaatgaattg aaaattcctt tagaactgac agcccaagtg
      361 taagaatgat aaacggcttt ggccttgata atttttatta agcactaaat gtcacattta
      421 acctgcatta ctgaaagcaa ttacccgtgt atcaacagtc aggcggtgca gagctagatg
      481 cctgaggcag cagcattatg ctccacctgg gaataaggat tttcaattag gaggcaaata
      541 gctggagagg ggatcaagtc ctccagtggc tcccaaagga ggtctatgag aaggaaagtc
      601 ttcctatcca agtaatcgca ggcagtgtca acagagcatt ccaaaccatc tgctgccaga
      661 gcagcgttta ctttatcaaa tctcaatatt tacagagcac tgatcagctt gtgggaccag
      721 gatggctctg tgccagggtg ttgtgggaaa ttcattttaa ggtgtgtagc agtaggctaa
      781 ttaatttcca ggcacctgtt tcatcactgg gagctgttag cacaccagat gagctgcagc
      841 agggcaaggg gactttttgt cttagctaaa ttgatttcca ttgattttca tttactgatg
      901 gcgctgttgt aatttaatat aagcctggcc taaagtcttt ctttt
//
LOCUS       KCLA01003019             269 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49157upu ultra-conserved element locus uce-3527,
            sequence.
ACCESSION   KCLA01003019
VERSION     KCLA01003019.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49157upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>269
                     /note="ultra-conserved element locus uce-3527"
BASE COUNT           96 a           60 c           42 g           71 t
ORIGIN      
        1 aaagcctgaa agttcaagag tagtgccttg tgtacatatg caactattta cagttgagaa
       61 caggcattac cacaacacta gtctaaactg ttttatataa aaaactacaa gtttcataca
      121 tcacaaaagc ccctttgatt ataacagaga actggtatta ccagacaagc atcagtgaag
      181 tatactgcct tttctagagt tgttattgta caatgctgta gataacgcag cccatgcaat
      241 acacccaaga acactacagt cctacaccc
//
LOCUS       KCLA01003020             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49172upu ultra-conserved element locus uce-3662,
            sequence.
ACCESSION   KCLA01003020
VERSION     KCLA01003020.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49172upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-3662"
BASE COUNT          270 a          189 c          168 g          235 t
ORIGIN      
        1 atctcagact tgcagaatta ttgaggctgg aaaagatcat caggtccaac ctgtgactta
       61 acatcacatc agctacacca tggctcctag tgccacatcc agtcttttct caaagatctc
      121 caaggatgag gactctacca cctccttggg cagtccattc cagtctctag tcactctttc
      181 tgtgaggaaa ggcttatcca aagtcatgaa cccaactctt ggtagcattc agttcactct
      241 gaagaaaaag caactactta tagcagatca acacaaagag caggcacagc aggttaggct
      301 aggagtgcat tagacaaaca caagccattt aaatgaactc aaatagccag catgtcaatg
      361 ccaaataaac atgtgcttta atttgttcaa ctgtaacctt tgctatagta gaaaaatgct
      421 ctgacacaaa cacttcacaa atgtcagcag aaaatccata ctccatttct tcacattggt
      481 tttgtgacac agtgtttgct gatattcgtc gagggataag ttgcgattga tttcctccca
      541 ctgttactct cttctcttgt gttataggga attaaagggc aaaaatgacg tttctttccc
      601 cagaccattc atatggatat gctacactag gtagacttca ctgctgcctg gaactcaaag
      661 gtcaacagaa ctctcagaaa aaagcttgag tggtaacaga agtgcagaga aagctaagat
      721 tgaggagaaa aattacacag actgcagaag acttagtgtg gatggatact ctgaagtatt
      781 tgctcctgtg ccttttctct agatactgct cttgtgtatt tacacaccag aatggaatca
      841 tagaatcatc agggattgga ag
//
LOCUS       KCLA01003021             747 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49188upu ultra-conserved element locus uce-6110,
            sequence.
ACCESSION   KCLA01003021
VERSION     KCLA01003021.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 747)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..747
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>747
                     /note="ultra-conserved element locus uce-6110"
BASE COUNT          192 a          162 c          216 g          177 t
ORIGIN      
        1 caaaaagaga gccgggaggt cagactaaat accctatccg cgtcgttcta gctacaaaat
       61 gacccgagta aaagcaatca agcaacagta agaccacgtt acacaaatgg aacatcatgc
      121 tctcgtctgg ttcaactatg acaccaaggt tccaccggga tgttggtcag ctttaaaaac
      181 cgtgggaaat gtgagtatgt agtcgcaagg gttgtttcct actgctctgg tttcactcta
      241 tgctggatat tggagctata ctggttacaa tacagtgtcg cacatcttcc tactagatca
      301 agatccgtta cccgtctctc aagttagagg tgtgacgtca gaaagggtgt cagaatggct
      361 gatggtttta cagtgcacac tcattatata cggtaatatg gagctttgtc cttgacagat
      421 cccgtggcgg tgctgcgtcc ttcccggctt cacctcttct tgggagggtt agctgtgcga
      481 ggcggagtga ccgggcgccc ggaattcagt cccccatact ggtacttggc tttcttttca
      541 gatggtttca gtatctgaag gggaaacgga aggggttggg agtcggtcgc agctcagaga
      601 gctgcaaacg cttaaggtga tgcgaaggct cgtccagcag gaacgagggg agaggtttgg
      661 gggggaagca catcgcaatc ctagtgctac ccctacgtcg ggggaggaag gggaaagaaa
      721 agggaatgaa aggatgccaa ggatgga
//
LOCUS       KCLA01003022             734 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49202upu ultra-conserved element locus uce-1561,
            sequence.
ACCESSION   KCLA01003022
VERSION     KCLA01003022.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 734)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..734
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>734
                     /note="ultra-conserved element locus uce-1561"
BASE COUNT          224 a          112 c          152 g          246 t
ORIGIN      
        1 ccgctttaat tgacaggcat ggcattcttc atgcacatat ttttatgagt taatgtttca
       61 tatttatttt cattttccca ttaatttctt cttcaggtgc aatctagctc ctgtggtgga
      121 gtttgctgct gatgtgggaa ctaaatctga ttttattacc atgaacccat cagttgtaca
      181 aagagcattt ggaggctttc ggaatgagag tgacagagaa aaatttgttc atagactgtc
      241 catgctgaat gacagtgtcc tttggatccc tgctttcatg gttaaaggtg gagagaagca
      301 tgtggaatgg gttaatgcat taatccttaa gaataaattg gatgtgcgta ctgcctatcc
      361 atcactgaga cttattcatg ctgtaagagg gtaagtgtct ggaaaagact ggtctgtgct
      421 tggctcaaca aagcttgtaa ctagagtacc taggaaaaac tagttttaaa agaggtagat
      481 ggatttaatt tctgatgaaa taatgtcttt gatagtaaat gtcatccact catttagcct
      541 gctctaatgc aaacagctga aagtattcac ttttgcttta atgaacaaaa atttttaatg
      601 atcattatag taatgatgaa aatagtctga attcaaagga tatctttgag tcatcacatc
      661 agaggacagt ggaacctata attgtcgtct tttaggcaag actctggaga taaaaattat
      721 aatttatagg agat
//
LOCUS       KCLA01003023            1041 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49217upu ultra-conserved element locus uce-6482,
            sequence.
ACCESSION   KCLA01003023
VERSION     KCLA01003023.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1041)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1041
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1041
                     /note="ultra-conserved element locus uce-6482"
BASE COUNT          341 a          211 c          164 g          325 t
ORIGIN      
        1 gaatctcaaa acaggggttt ataaaaggct aagaattgct gactcttttt tcagtcttct
       61 tagaatcatg atattaacct cctcaataga gcctttcata gaacagtaat taaaaaatca
      121 tacaaatatg taccatgtta cacactgaga gagaaaacaa tgtttccatt cttcaagcaa
      181 ttaattattg tgattaatat attccccctt ccctaagtac acttctgcca gagagagcca
      241 tcccactgac atattgtaga attataatgc atatctaatt aaaggtgacc tgaaaaggca
      301 gggtgtttag ccttccctgt caggaccaag aaactgttaa tcagaaagtg gttgctttcc
      361 accccaccac acccctcctt tttttatttt tgtgctaatt tcaaatcttc tccctgcatc
      421 agtgagcaga tgagatcttc agccagcttt catctttcag aaaaatgaat agtgcagaaa
      481 gaacattatc aaatgagctg ttgaagaagt cagtgaatat gtcattgagt gtgactgctt
      541 ccagaatgaa tttagattta tctctgttat cttccctctc ccaactcact ctgcacactc
      601 tgtttgcact cagtccacat gtcaagcagg gtgggtcata atgaatcatg agggacagtt
      661 acttgtagaa tagtgacagg tccaattgtg atacaacttg ttctggaatt aagtttgtta
      721 acattataaa ttgtctcatt tgaccagagg tttaaacacc tagaagcttt tatgcatgca
      781 atttcttaaa gtatttcatt tccattaggc agctgctgct ttacagtatt ccacaaatga
      841 aattgtttca tcacatcaat agctacacaa aacaactgtg acaacaagaa gactgtgccc
      901 atcttgcaaa caagtattat tcaaatcaat aaactctggc aactgcaaaa cacaaagaga
      961 acttattatt taaactccat ttttaaccac atcttgaaat gcttatgctg atgcaaaatt
     1021 ctgatataaa acaaggaatt t
//
LOCUS       KCLA01003024             559 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49233upu ultra-conserved element locus uce-178,
            sequence.
ACCESSION   KCLA01003024
VERSION     KCLA01003024.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 559)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..559
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49233upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>559
                     /note="ultra-conserved element locus uce-178"
BASE COUNT          157 a          141 c          122 g          139 t
ORIGIN      
        1 tgaagggcta atgattattg actaccctcc agcagacatc agggagtcta gcctgaggcc
       61 cttcccgctc gcccccaaac atgccgaatg ttaacacatg tttttagatc ctggctggga
      121 ttggacacaa acaaggcagt cagaatggac catttagtgt acaagtcaag atgacagatc
      181 tctgcttaat acaaggaaga ctaaaattcg tatcttattg aaaaaggcag aagagcccgg
      241 ggtgttttcg ctttgtgatt ccgcagcaaa aagtgggttg tgtcaatata agtctatgtc
      301 acccgctcgc agctgccaca ctggattgac cccgcgagct gcagacagaa aggccttcca
      361 tttccgaatt ctctctaatg ctcatctgcg agaggtggaa aagagccaac aagttcctcc
      421 caacaaaaag caacacaaaa ccgccttcat gccgggagac tctctccgct gcctctttcc
      481 aacgagaaac tttctcatct gaaagcattt cagaggctgc tttgacaacg tgagctttat
      541 gttttgtaaa tcacgttct
//
LOCUS       KCLA01003025             839 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49249upu ultra-conserved element locus uce-6940,
            sequence.
ACCESSION   KCLA01003025
VERSION     KCLA01003025.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 839)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..839
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49249upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>839
                     /note="ultra-conserved element locus uce-6940"
BASE COUNT          249 a          174 c          204 g          212 t
ORIGIN      
        1 tacagatagc cctgacggat gcagcccatc aatatccccc gtgtctgggt gtcaggacaa
       61 aggaaacgag agaagaaaag caggaaggcg aggagtggct ctgaaggagc gatgccctca
      121 aagttggtca aagacgaacg gaagcggatc acgtgcagtc agaggagagc tcagagcccc
      181 gttgtttcga acacgacggt cacatcggag cagttaagcc tcgagctgac caagctgaat
      241 aaacaaacaa ctctctttga ttcgttcctg ctttttgctt gacttttcat ccccgcggcc
      301 agccttccta tattttattg gcaatttata gagtcagcag aagacaccaa agccttagca
      361 acaagatctt gtgatgtaca aacaaaatgc atttaatttg actcagtgta ttacaagcat
      421 tataatccct cttctgattt caacatgatc gactaatctc atctgctcag agggataagc
      481 cttgtctcag ccatgatgac aggcttagag catgataaaa attagggcat tctcacagat
      541 tatatgctgt aacaacagat aaggcttatg aatacagaat ggactacagg tggttgtttg
      601 tagaaatggg ctagattaag gggttaatgt tggagaggta caatgtcatt ggtggctaaa
      661 tcatagatac acacgggtgt ggggaaagct tgcttgcctg tataaacacc aggggagatg
      721 aagcgaattt catagctcat ttcacccaaa ctcagatcca gcaagtgtgt tctccaggaa
      781 aagatcaccc tagtttgctc ttgggaagtt caggttggta actccttgtg ctgggtgaa
//
LOCUS       KCLA01003026             870 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49265upu ultra-conserved element locus uce-136,
            sequence.
ACCESSION   KCLA01003026
VERSION     KCLA01003026.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 870)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 870)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..870
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49265upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>870
                     /note="ultra-conserved element locus uce-136"
BASE COUNT          248 a          202 c          198 g          222 t
ORIGIN      
        1 ctgagcatgt aaatggttag tagagataga ctagttagaa tgctctgcac tgttaaaaga
       61 tggccgtgga gccctcgggt agccagctca cagccggtag acagagaagc acctggtccc
      121 tgcgctgtcc tgctccattt tgccagcaga agatctggct ccaggagagc ttgcctaata
      181 tttgccagtg ccgctttctg aagatgtttt aaagctaaac cggctaacaa aaagtctctt
      241 gtagataaaa gagctctgca agtcaacaac tggctaagca gtttaaaccc ctaagcaagg
      301 catcctctat ttaaacgtta taggcaaatc taatttaagc ttttaaaaat attatgggca
      361 ggtgtttaag tcgagtgcgc agtgggtttt gcaggggctc gggagggggc tgggagccct
      421 tcccaggcgg gcagcatttt gttcagacaa tctttctgca gagggccacg tgacacaggc
      481 caaataaaca gcatctgggg attttcaatt acagaccttc acccagcatg cctgcactgt
      541 aatctctacc agatgaggct caggcctcac tattttcaat aattcacaca ctgtgtacac
      601 ataacatgac aataagggca ttcatgcaac cgcctgattc gcacatcaaa gctcccaaat
      661 ggccagctgt aagcatgctt actgctgaat aattcattct tttcacagcc ttgaaaaaac
      721 gctcagcggg agttggcaag cttgtgttct ttcctgtgtg gtatgctaaa ctcaaatttt
      781 gaaagaggta caaccccact aaaaagagtc agagatccaa ctatttaaat gtgcatttgc
      841 gagctctcgg atggctgctc accaaaaaaa
//
LOCUS       KCLA01003027             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49280upu ultra-conserved element locus uce-4754,
            sequence.
ACCESSION   KCLA01003027
VERSION     KCLA01003027.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49280upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-4754"
BASE COUNT          263 a          160 c          188 g          256 t
ORIGIN      
        1 ttgctttttt caggtgtggt gaaactggcc atgtagccat caactgcagc aagaccagtg
       61 aagttaactg ctaccgctgc ggcgagtcag ggcaccttgc acgggaatgc acaattgaag
      121 ctacagccta actattttcc tttgtcgccc ctcctttttc tggttgatgg ttgtattatt
      181 tttctctgaa tcctcttcac tggccaaagg ttggcagata gaggctactc ccaggccagt
      241 gagctttact tgccgtgtaa aatgaggaaa ggggtggaaa aatcaacttt ctgcatttaa
      301 ctacaaaaat gtttatgttt agtttggtag aggtgttatg tataatgctt tgttaaagaa
      361 ccccctttcc gtgccactgg tgaataggga ttgatgagtg ggaagagttg agtcagatca
      421 gcaaaaccct ctcagggtta catgaaagtg atcctatgca ggaggaaaga aattctggaa
      481 gtgtctaaac ttcctcataa ctttaatttt attacaatgg ccttggattg tctgacctca
      541 gtagctgtta acaccaatat ctgtatcagg ccctacctag agcatatagc tgagagtaaa
      601 taaacaagat gcacatgcct attaatggcc atgagagaga gagagaaatc ggaaataaac
      661 ttaaaagtaa cattgattca gtcattgaat gttcatgttg gagatacaga acgtaatggg
      721 aagcttttga ataaatactt caaaatacat ctgaaaccca gacatcagtg ctcatagcat
      781 atacaatttg gagctgttca tgagttgcaa ataaatgcat tttcacagaa agcaagatgt
      841 tatttttgta tactatatca cttagac
//
LOCUS       KCLA01003028             618 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49295upu ultra-conserved element locus uce-3845,
            sequence.
ACCESSION   KCLA01003028
VERSION     KCLA01003028.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 618)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..618
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49295upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>618
                     /note="ultra-conserved element locus uce-3845"
BASE COUNT          183 a          145 c          103 g          187 t
ORIGIN      
        1 tttatcaccc tcatgattga tgaaagcagt tctatgaaaa gagctctcta aactatttca
       61 aagcacactg tagctcatca aaatggtcag aggcatctct gagcctatta cggctgtatt
      121 ttccaaactg gtattttttt ctcccctcat gttctttgca tgtacatggc tttgtatttt
      181 taaggcttct ggggcctcct tctgcctgtc ctttccctta tttgctcttt tgcttatcaa
      241 gacatactca cacacagcaa ataactgcca gaaaacaaaa ccttaaattt gcttaaacaa
      301 gacattcagt acaatcacac ttcatggaaa cgatttaaca aagaccacca cagttgaaca
      361 acaaagcagt tatgacccct ctagcttttt aagacattca ggcaaagcaa aggaaattca
      421 gatattgcat atgttgagct ttgtgctcag aggctctgtg agaaaatgaa agctgctcat
      481 ctactttcca agagaagcat tgtaggtgat tgctctaacc tggggcacag tacattctct
      541 ctatggcatc gttgtcacag gaatcttcaa cctccctcca cctgctaaaa tacgttagct
      601 gaatgtgtcc taaaaaca
//
LOCUS       KCLA01003029             349 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49310upu ultra-conserved element locus uce-4005,
            sequence.
ACCESSION   KCLA01003029
VERSION     KCLA01003029.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 349)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..349
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>349
                     /note="ultra-conserved element locus uce-4005"
BASE COUNT          113 a           68 c           48 g          120 t
ORIGIN      
        1 ttttaaacaa agtgcccatc tttagtttct cagtctcctt tccctcacct gctgagagcc
       61 acacaatgta cttcaccacc agtttctaaa atgcttctaa aaacttgaag tattatttgg
      121 aaaagggcat tcttattcct catgcataaa atatacatgc atattcatat aaaacattta
      181 gaaaaatttg taccagttat aattagcatg ttttgtgcat ctattttctt tgctattaaa
      241 taacaaattt gtggtaacca tagcaactgg aacatcacat ggtactggta ctattttggg
      301 gataacataa gtacctttct taaagaagca ttcgcacctc taagatatg
//
LOCUS       KCLA01003030            1061 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49326upu ultra-conserved element locus uce-287,
            sequence.
ACCESSION   KCLA01003030
VERSION     KCLA01003030.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1061)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1061
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49326upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1061
                     /note="ultra-conserved element locus uce-287"
BASE COUNT          332 a          211 c          185 g          333 t
ORIGIN      
        1 acaagaggaa ttcttagttt caccaaggtg ctttgatatc catggagtag ttgttgctct
       61 atggctgtgt ctaaaaccag gtttttttct tgattcgtaa tgtttcctat tatttgttat
      121 agcttagcaa caattaacat atcttctcac tttcctcatc actacttcct caaataacac
      181 ttttgacact ttccaaggct gtgacttcat atattttttt ctttcagcac atgaacaact
      241 cagccttgtt ggtattgaat ggaaatgcta cctaactatt gcaaggagac tcagtctgaa
      301 acaggaccag aaacattaac tagctcaaat gagaaataca atctaaaaag ctgtctgtcc
      361 attttgggaa catgcagata atgtgtatgt cacttgaaat tcacatgcat ttgggatctg
      421 caaggaaaag taatatacag caatgatatc tttgatcatc gaaagaactc agaaacatag
      481 gaactgtgtc gagtgtggtt atcatcaacc cattttctat tcccagtgca caaatcactt
      541 catgcattct acaacccaag ccacgatgct gggcttcaaa agcaatttca gcagcaaaat
      601 aaggtgcttt tcttcaattt tcaagccatt tgtacgaggt tagtgttgtt tacccacctg
      661 gtacactgat atttacatac ccctttaaag aaaattggta ggtatgattt atggagtact
      721 gtaagagcac aattttccat gtagtgcacc taatctgaaa gggcacttgc aaaggtcact
      781 ctggccatac aaataccaag tcttctcttt ggaataagtt aggatattca tttttcttgg
      841 aaaatgtcag cagtacccta ctccaggggt tagtttatgc agataaatgc gtaagccttt
      901 aatcttaagg caaaaatact ccacacaaat gtaagagaag tccatctatc actgttaaga
      961 cctgtaattt gtttttattt aaatcccaag ccagggcagc ctgggcaaca aaattgttaa
     1021 catggtagct cacatctgag ccaagattaa agtatataaa c
//
LOCUS       KCLA01003031            1506 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49341upu ultra-conserved element locus uce-2053,
            sequence.
ACCESSION   KCLA01003031
VERSION     KCLA01003031.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1506)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1506)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1506
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49341upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1506
                     /note="ultra-conserved element locus uce-2053"
BASE COUNT          502 a          293 c          275 g          436 t
ORIGIN      
        1 tatttcctcc gtatctgaca gataaaatca taaaactacg ttttgaagag aagtgtttcc
       61 tcacaacaag gtaaaaaaga catcttattc aaataacaga gtagagtatg taagtactgt
      121 tgtaagtagt tgcaaagcaa tgttttatta aaggacaaaa aggcacatca gaagctgcag
      181 tgacgctaca caaaagagca ctagagtact tgaacgtccc atttcaagca atgtaagaag
      241 ttaatctgca cccagttaac tcaaattttt aaaactacac acacacaaaa accctgggaa
      301 aaaacactgc gagttgccaa acaacagttt tgagcagctt cacaatgcaa ttggttattc
      361 atagaacata ccatggggca cacagcattt aactttttca aaaaagctaa caaaacaaca
      421 gaagacatag ttgcaaaagc tattttccta cagcatgtga agaagtcaaa gtgagttctt
      481 gatttacctt ctataactgc tgctatagcc tttacctcgt ggtgaagggc catgtacgaa
      541 tctacatgtg ttcccataga ggcagttgcc agtcttcagc cagttacggc actgtgtcta
      601 agagacagac attactgggt gaatttcaca ctcatttctg gaaggaccat tggtgtgagt
      661 gtggcagaac aaacaaaaga ctctacatta actcccattt atctctaatt tctgttcacc
      721 agtaatacaa ctaattaatc aacaatgagc atcatgtctg gcagacaaaa atttaggttg
      781 gtggaattac tattaatacg gtcagcgcta ctgctcctct ccagaagctg agacaacaca
      841 cattatttga aaattctagt atgttgaaca tccatacgtt aaggagttct tttcaccttt
      901 actaatattg gtgacatctg actattagac acttgcaaac tgttctttcc caccacctaa
      961 atcctggaaa agaagatgct gggatgggga ggaaaaggaa aacactttca caactcacct
     1021 ctgcagtact tccagtgctg ggtccaagcc tttcaaatac actgggtctt cgggatgtgc
     1081 tatcggatat ggtcttggta ttttccactg tgaccttcct tctaattttt gacattttgt
     1141 actacttcaa ccaaaaaaaa aagcaaaact gtaaaatcct tcagtttggg gctattgaca
     1201 ctgaactcac atgaataatg atatatgttg ctgcagaggt gatgaagaca gaaaaagaag
     1261 tcataaatga gtgaaatata tgtaataaca aggaatgctt ctgatttgaa ctagttaact
     1321 gaacaccagt tatgataatt tttcatttga ttttatgatc tgctttggag tcttcagctt
     1381 cccttaggga aaaatcatac gacatgttat tcattggagt agcaaacacc acacagaaca
     1441 gatgctttcc ttcgtcttgt attttttgtg catgaactta agtgatttca agtgaaaaga
     1501 acgttt
//
LOCUS       KCLA01003032             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49356upu ultra-conserved element locus uce-4143,
            sequence.
ACCESSION   KCLA01003032
VERSION     KCLA01003032.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49356upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-4143"
BASE COUNT          292 a          221 c          181 g          284 t
ORIGIN      
        1 aacacacctt acttggctgg aattaagctc agaaacctag gttaagttta cccagactgg
       61 acattcaaaa ggaactgtgc ttctaggaac ctgacatgtt tgcagctaac tgctttctga
      121 aaccaaaacg caacggcaca tacttcagta tcactatcaa cttcaggttg ttactcgtgc
      181 agtcatctct aagattatga aaaaaagcat aaacactgaa agtaaaagtt ccctttctcc
      241 tgtaggaact ctgtctcatt agtcactctt ctcttgagac aaagaacaag aaaatactgc
      301 taccatagtt aggcattgca ttcgtcacac tgcccaagca ctcctacaac ttatgtcaca
      361 ataaatagtt catttgaaaa taatacaata ctgccatcac ctgccgttgc tgggctgctg
      421 tggagaatgc ctggaatggt ctgaaggctc tgacctctgg tcaggagatc gtgaacgact
      481 gcggcggggc ctgtcatgtg atcggttgga atgatctgat gccagcgact gaatttctga
      541 aatgtctgtt aaataaaagt tgttttgtca tgagatgatt gtaattaaaa tggtggtgtg
      601 atctgctcaa atggaagtaa gcttttgcag agaattttta tgaaggagct aaatctacat
      661 ttgttatttc aaaacagcta atcacagtat ttctgaaaga acaattgcaa ggataggaac
      721 tgcattcttt agtctgctct cccaagctgt gaattcaatt ctcaaaccag aatttaccca
      781 catgacaatc ttattcctaa cccttctcct ccccaccctc tcatctcatt taagcactgg
      841 cagcctccct ttgaaaatga attttattta cactcaccat ctctctctga agcattggca
      901 gaatgaatgc tgtcagaaag atcggggaca ttcaacaatg tagctcgttc atctcgctga
      961 accaccatct tcaacttg
//
LOCUS       KCLA01003033             937 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49371upu ultra-conserved element locus uce-5401,
            sequence.
ACCESSION   KCLA01003033
VERSION     KCLA01003033.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 937)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..937
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49371upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>937
                     /note="ultra-conserved element locus uce-5401"
BASE COUNT          193 a          255 c          262 g          227 t
ORIGIN      
        1 cccccgtgac tccactccct acaggagcag cccagtttgt gattcacaga ttattacacc
       61 gagctaaagc aaaccggtcc ctcgagaagc cccctcagtg gagccctgtg ggaggaggaa
      121 aaccccgagg agacaccgct ggctgtcgcc ttccctctca gtgggagagt gaatatttcc
      181 cgttctgccc ggagccgacg cgtttgggct ctcgattcct gacctgtcgg ggtgctctgt
      241 ggtagccgct aacagccgct gcgagtagcg tcggtttgat gcttactggt tttgtttcat
      301 gtcaccctgt tttttctttc ctctcctttg ctgtcggctt cacttctggc tccatcagag
      361 agagctgcag gtctttgctg ccgcttagta gtcccctgtc ataaaggaat gccaaggctt
      421 actgatctgt ctgtcaaaac caaagatgtc tgggaaatcc cacgagaatc cctacagttg
      481 atcaagagac tgggaaatgg gcagtttggg gaagtatgga tgggtatgga gcaacaccat
      541 tctactcaaa tagctcgctg tgtggggatt gcaagatgga aggtgacgac ggaggacgcc
      601 gccacgcgca gctggggttc ataccgagct aaaacgtcct tggaatcacg ttgctgcctt
      661 cgaaattcct ggggcctcag cgccggctgt gattgatggc aaacgagagc cgaggttgcc
      721 cctttccttg gacggctttg atgttgacaa atcactgctg tcttcgtaag aaaggagggc
      781 tggcacggga atctgttaat tagaccgaag ggctctctgt gcgagcccac agaaaggccc
      841 ttcccttggg gatcctaacc ccgctgtccc cgaacggact ctaacggggc ctcgaaggcg
      901 gcgtcacctt ccatcttggg cgatgcatgc ttactgt
//
LOCUS       KCLA01003034             473 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49387upu ultra-conserved element locus uce-5672,
            sequence.
ACCESSION   KCLA01003034
VERSION     KCLA01003034.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 473)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..473
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49387upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>473
                     /note="ultra-conserved element locus uce-5672"
BASE COUNT          152 a           90 c           86 g          145 t
ORIGIN      
        1 atagctagtg caaataggat tggaaggctt gtttggagag ctcttgtgac gagtgctatt
       61 tgctccagtt caagcagatg agcagacaat cagactgaaa tgtgagattt ccaggcacat
      121 aatagaccct tggcttatca aagcctctta tctgagaaaa aaatcaaagg taaacttcac
      181 agctcatgga attaaaagac aaatgagatg tcataattat caaagtggct aatttagaaa
      241 attaagccat tcacataggt gacataattg cttgtcacaa tcactctttt tctcattagc
      301 cttctcttca gcacctaccg tacagtggaa cattctttag tcttggaaaa tattgcctat
      361 actgtaatcc cttaatagca tagcccctga aattaatgca aaaatacact caacagcttc
      421 attagtgtga tgtagttgtg tgattctctg tttgatcatg tctcatactg taa
//
LOCUS       KCLA01003035            1142 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49403upu ultra-conserved element locus uce-3302,
            sequence.
ACCESSION   KCLA01003035
VERSION     KCLA01003035.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1142)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1142)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1142
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1142
                     /note="ultra-conserved element locus uce-3302"
BASE COUNT          368 a          230 c          257 g          287 t
ORIGIN      
        1 tgcaaacacc agcaatgggg atgcaaaaga aaatgaaatg caggtgggaa gtcttttaaa
       61 tgggagaaag tatagtgact ccagtctacc tccttctaac tcagggaaaa ctcagaatga
      121 ggccactcag tgctcagaag tcagtaatgg gccatcatta gaaatgggtg agaatggagc
      181 tcctggaaag cagaattttg aacaaatgga cacacaggaa attaaaagtg atttgaagaa
      241 gcccctagtt aatggaatct gtgattttga caaaggagat ggttctcact tgagcaaaaa
      301 cattccaaat cacaaaactt ccaatcatgt aggaaatggt gacatatctt cagtggaaca
      361 acaagggaat ttggatgcca ctcagcaaga tactgccaaa ggtgatcaag gggaaaggat
      421 ttctaatggg cctgtattaa ctttgagtag ttcacctgtt gtaagcggta cacaggagtc
      481 tgcaaaactg ttaacccagc aacttagtgg taccaacact gatttaccta atggacctct
      541 agcttcaagt ttgaattcag atgtgcctca gcaacgccca agtgtagttg tctctccaca
      601 atctacagcc tctgttatac aggggcatca aatcatagca gttccacact caggacctag
      661 agtgtcccag tctaccctgt cgtctgaagt tcggtctact aatggcacag cagaatgcaa
      721 aactgtaaag aggccagcag aggataatga cagggaaact gttccaggaa ttccaaataa
      781 agtaggagtt agaattgtta caatcagtga ccccaacaat gctggttgca gtgcaactat
      841 ggttgctgtg ccagctggag cggatccaag cactgtagcg aaagtagcaa tagaaagtgc
      901 tgttcagcaa aagcagcagc atccaaccac gtacatacaa agcatggtca cacaggtatg
      961 ttgcagcgtt ctttttatgt ttattctgtg attctgacta atactgtgaa aacatcaact
     1021 cagtcaatgt ctgttgagag catttaaaat gttcagaaaa tgctattctg ttcttccatg
     1081 gcctgaatgt ttgcatgctt caatgtctct gacaacagtg gaattcaaaa aaccctgtgg
     1141 at
//
LOCUS       KCLA01003036             883 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49418upu ultra-conserved element locus uce-1702,
            sequence.
ACCESSION   KCLA01003036
VERSION     KCLA01003036.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49418upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>883
                     /note="ultra-conserved element locus uce-1702"
BASE COUNT          264 a          225 c          150 g          244 t
ORIGIN      
        1 gctacccaag acaatgattt gtcacacatg aacaggataa ggaatttcca aattacttct
       61 gtgtgccaga gatccaagtc attaagacag atacttgagg gtaccacaaa caccgctgca
      121 gcacctggct gcaccataca cactttaatc tgtttacaga gctcccctgg cagtaaccat
      181 cacagttcac ccatacagac actagaagtc tgccgtggca gagggaatgg acttatcatc
      241 caagctctca tttctatgat tttcaattaa acttcctttt ctgttggaac acagatcacc
      301 tgctccacca tgcacacttc catgttatta atttgttagc ttgcttgaat cacagttgaa
      361 aacctttcct tgcagcaata aattcaactg acagctaaaa tttggaacgc tcacttaata
      421 ttgattctga atgtaataac aagcgacatg accttttgga gggtgtaaaa tatggctgcc
      481 acaacatctg tgccacgttt cttgctgttt agtaatatgc tgtaacagca tggagctggc
      541 attgaagtta agctttatta tcaagcagat cactccatct ctctggcttc attaaaaaaa
      601 ccccacaaaa ccttactctt caccccacac caacctgctt cccacatgca gactggtgca
      661 cacagcacag tttctaagac ctaatttatt ctgcagtcat gaagtcgatg ctgaaagaga
      721 tccccctgcc agacatggca accccagcag actgaaaatt agttcatgtg ttcagtcagt
      781 gaggagaagg attttgcacc aactatcctg accaaatact atcaagtgat actgtttaca
      841 atcatctgtc tgtatcctag aacacacctt cacatcctgc ctt
//
LOCUS       KCLA01003037             431 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49434upu ultra-conserved element locus uce-7867,
            sequence.
ACCESSION   KCLA01003037
VERSION     KCLA01003037.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 431)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..431
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49434upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>431
                     /note="ultra-conserved element locus uce-7867"
BASE COUNT          108 a           95 c          130 g           98 t
ORIGIN      
        1 tttgatccat ctgatgaagg ccatccctgg tgatccgatg gcagagccct tcgccgaggg
       61 agcgggaatg tccgaggagg tgtgcggcgg cagacggaca ggctccctaa atgctacccc
      121 tgtgaatgga agcccttcat ttgtgcatat gcaattaagc agccttagaa ggaagaaagc
      181 tccaaatggg ataaaaggaa cctttaatca agaagctgaa cggtctaatt caggataata
      241 gaggggtcct tactgtttga cacaggaggg gtgggggtgc tttttgtctc tggaagctga
      301 tctaacgacc ctgagcaaaa gagcaggaat gcaagacact gctacttgac ctccccgtgc
      361 cgggagacac ggtagggggt ttctgtcact taaaatggat tgggttgttc cgagcgggag
      421 gctccctgct t
//
LOCUS       KCLA01003038             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49450upu ultra-conserved element locus uce-4739,
            sequence.
ACCESSION   KCLA01003038
VERSION     KCLA01003038.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49450upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4739"
BASE COUNT          208 a          109 c           88 g          171 t
ORIGIN      
        1 actacaatct tttaagattt attcagttga cacctcataa taatctctaa atctaacggg
       61 acatggacac atttcatcac agatgaaaat cttcagtgac tgctaaaatg aaaatcaaaa
      121 aattattaca atctagtagt ttggctcaca gcgtgcatta atcagaaatc ataataaatc
      181 cacatgcttc ttcagacagc acattagtca agcagttctg tacgataacg acagtgacta
      241 atgggctccc agttagaagg gtcaatcata aactcatcaa atgcttcatt taatttctta
      301 atttggacaa acacaatttg tttatgggaa agatatcagg tgttcttgaa tgaataatgg
      361 ctgtgaaacc aaactccatt aatcagctct tgattacaaa tgactccgag attgtttgtt
      421 ctaatttcat tcatttgggt caacaaagaa aacacgagca accgaaagca cttggaaaaa
      481 atggtacact tagttctcca gagttaataa gttgtgataa atatccttcc aataaccgtt
      541 aaacaagaat tttatgagcc atgctaaaca ctactc
//
LOCUS       KCLA01003039             692 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49465upu ultra-conserved element locus uce-6777,
            sequence.
ACCESSION   KCLA01003039
VERSION     KCLA01003039.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 692)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..692
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49465upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>692
                     /note="ultra-conserved element locus uce-6777"
BASE COUNT          200 a          138 c          138 g          216 t
ORIGIN      
        1 ctagttctga tcacctgcaa atccaagggc cagtctctga cactgttggt atttgagtga
       61 tctgctgctt atttttcagg attctggccc attgtcacca ggaattgtgc tgccctatga
      121 aaaagctaaa aaattacagt atgtcagagg attgcttttg ttttctgcac atctcaaagc
      181 aactgcttcc ctctcccttt gtttgctacc ttttgacact cttacagtga ggaatgattg
      241 aatatctgat taacatcaca cttttgccca gttttctgac gagatgctga accagtccaa
      301 atcccctgag tcttatgcag gaggtaatcc cacgatccaa tgtcagaata atccccccaa
      361 gacagcttaa atatttgtag ttctttctta aatcaagaaa tcccttgagg tttataccaa
      421 tcccaatttt aaaagtgact tgacctgaaa accctagaga aacatttgaa tggggttgtc
      481 ttgcctctgg cttcttggcc aacttgctct aataagatat gaatgagata tacaaggtca
      541 taatttataa tacgatatga aaattatgca tccagcgaaa ggctaagggg aaaaataagg
      601 gatggcaatg gtgtacagac agcatttact gtgattacta gaagggggcc ttagtgggct
      661 gggattattg tactttaagt gaaattgatt tt
//
LOCUS       KCLA01003040             642 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49480upu ultra-conserved element locus uce-1913,
            sequence.
ACCESSION   KCLA01003040
VERSION     KCLA01003040.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 642)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..642
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49480upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>642
                     /note="ultra-conserved element locus uce-1913"
BASE COUNT          126 a          195 c          126 g          195 t
ORIGIN      
        1 ggctcatcca tgagtaccat cccactctct cgtccttttc tcttctttga aaaaaagcca
       61 caatctaatt tttactctcg gctgatccca gggcctaagg cgccacccca aaataaaaag
      121 tgtcctgcct tcctcaggtc cagctgagtt gttttgctct gcctcctgca gcgcaggtta
      181 agccagtgcc agctctggtc tcaggagatt ccctgcaacc cccacttgcc tcgctccgtc
      241 gccggcagct ttttcattat ttatttaatg tcttgtaccg taaataatgg tgactttatg
      301 gttattagga acgggttaag gtacatgcgg gcagcaccag gctgccttca aaaggaacag
      361 gcccggcata aaatgttgcg ataattgctt tactgctgag tgcttggtct ttattttgtg
      421 tccgatttgt ctcttaagcc agcgtaacat tctccccgct gcaggagaat gcagagagca
      481 aattgaaggt ctgagcgtga acaatgcaac atggtgcact gctgggtttt tcttttcttt
      541 cctctttctt ccttcctctc tcgacctccc tccagtcatc tctgctcccc ctccccctcc
      601 agcctccttt ccctcttggc cactccagct cttccacctc tc
//
LOCUS       KCLA01003041             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49495upu ultra-conserved element locus uce-3950,
            sequence.
ACCESSION   KCLA01003041
VERSION     KCLA01003041.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49495upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-3950"
BASE COUNT          273 a          149 c          116 g          329 t
ORIGIN      
        1 tttttattga tatgttatca aatggcaact ttcatattta ttattttttc ttttagtctg
       61 tctttatatt atactttatt tcccacattt gcctggctca tgccaaactt ttgaagttat
      121 attaaattta ccaataaatt tttataggct taaaagcata aaaatcaata atactctgaa
      181 tagtttgtca acttgaatcc ctacacagca gctctgtaaa tctgtactat gttaaactat
      241 actagcatat atgaattcag taattccttg ctgctcttta ccaagagttg gaacacaggc
      301 ctttccactt tctgtttctt cactttcatt tgttctactt tttaattttt aaagacagtt
      361 tggtatctta gccatcttca gttgggatta tccaacacac ttctcatttg catgtgaagt
      421 gcagtcaatg tgaattgatc aaaaccaaat taacagcaat tggttccaat attttccctg
      481 tttacacatt agcctgctac cattaacata tagatgtatt gaattcagct tagcaacctg
      541 agcatgaatg ctgtggcctt taaatagaaa cttatctgta attaaaatca tttgcaagat
      601 gtagtgggaa tctgtttact gcctaaaaag ttgattctaa aaattaatag aatttagttt
      661 catgttcatg tgtttacttc caaattaaat gccctagacc cgttcatctt cagattatat
      721 gaaggttaca tctagttctt ggtgggtttt tcaaaaaaaa atcatgtacc atcactgatt
      781 ttttaagata tcactgcaaa ctgataataa gttaacacag ttataaccat tatgagcata
      841 ttttgcaaaa gtcatataat aaatatg
//
LOCUS       KCLA01003042            1143 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49511upu ultra-conserved element locus uce-3050,
            sequence.
ACCESSION   KCLA01003042
VERSION     KCLA01003042.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1143)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1143)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1143
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49511upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1143
                     /note="ultra-conserved element locus uce-3050"
BASE COUNT          225 a          331 c          303 g          284 t
ORIGIN      
        1 accttctctc tgtcttgcca ggagagcact atcccacagg agtttgttca ctgggttctt
       61 gttctaactc tcaccttttg ttgcaggcct atcaccctga cagtggccaa atgctgggac
      121 cccagccccc ggggctgttt ctcgttaccc aggagtaagt ggatagctga cccaccctta
      181 acgctggtac ccagctcatg tgagagccct gccttaagca cttacttggt tgttgtcttg
      241 ttcctcccct gtgtgtgtga ctccatgtgg cactgaattg gggtttgatg ggatttcagc
      301 tctccactta ggaggctgtg ttctattccc aggccaaaat gcccatgagc ccagccctcc
      361 ttcccacatc acgctgggga cgcgtttcac tggggtaggg gggtcacttg ctcggggcgc
      421 cagaggagag aaaccccacc ttgagccata gggggatctc ttcctctgca cctctcctgc
      481 tgacccttcc tctcttcttt ctctcccagt tgctccccag cggatctggg ctgggccaga
      541 ctctccatgc tccgatccgg gtgagtcccg gcagatgctg gggatggagt gggctgtact
      601 aagtccctgt cactccccag aagttgattt gatgagggca taatttctta tagctactga
      661 ctgatccttt cttcaatgca ggtgagccca tccggcccat tgacccggca gcctgggtgt
      721 ctcacacggc agcgatgact ggcacctacc cagcgtacgg tatgagtcca tccatgagca
      781 caatcacttc caccagctcc tccatcacca gctccatccc agagactgaa cgtaagtcct
      841 tgtgcctccg tgcttcaccc actgcacagc ttcctcacct tcactgtgct ataaaaggag
      901 caatacatct gctgggggac agctgggacg ggcaacatcc ctgccaggag atggggtggg
      961 aggcagctct caccagggtg gagcttggat cagtgggaat tctttccagg tgaattcata
     1021 caacttcttt cagccttcta tagaaggaca gtagaagagg ccatatgcaa tccaggagct
     1081 gtggcaggtg cagaggaaag cctaggagca gtcaggagtt agtggctgtg agtgtggggc
     1141 tag
//
LOCUS       KCLA01003043             913 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49527upu ultra-conserved element locus uce-1470,
            sequence.
ACCESSION   KCLA01003043
VERSION     KCLA01003043.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 913)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..913
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49527upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>913
                     /note="ultra-conserved element locus uce-1470"
BASE COUNT          238 a          233 c          166 g          276 t
ORIGIN      
        1 gtccaaagtt tgtgtggttg tgaaaagaca tcgcaaggtc ttctcggtgg ctggtgggca
       61 caccactgcc cacatcacac aaggctgcgg ctcccccact gcttgcctgg cggtggtcag
      121 tcctcccagc tgccctatcc gttactgtct gattagccga gtgaaggagc ccctccccgg
      181 ccagctttgc ccgccatctg ttccacacgc catggctgcc gcccagcagc cttgcactgc
      241 cctcctacct ggcacccggc tcccggcctt accccaaagt gctaacacag gttctcgctg
      301 ctggcagagt caggatttca ttactactac tttgacaagt gcagggttgt ttgtaatttc
      361 tcttttatcc tgattttgat tgtacaacca cctcccactg attcagtttg cttcagtttt
      421 gttgctcaca gattttactc tctgcattaa tctccctctg gcatgttact gcatctgttc
      481 ccttttttat tattaatttt caaattccca ccatttttct taaaaaggag gtaatctaca
      541 ctctgcttct gcccatttca ttttctttaa tttggaagag aaggaggaga tcgtgccaaa
      601 gaagttaatt ctccgttaac agtttatttt ctggcacccc gatgcctttg tacatgaaaa
      661 acagatagaa ataaacgttg actgaattgc aatgaaacag tggccactgt ccctaaattt
      721 aatgaaaagc aaacatacaa aacagaacct acaaagttta ttagttatca gacttgttta
      781 atgatattgc ccctcctcac actttaaaaa tggtcttgta caagaatata aaaaaattag
      841 aaataaatca ctgttgatac ctcccttctg catgacagat attactatga aaaaatagat
      901 atcagtaagt tca
//
LOCUS       KCLA01003044             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49543upu ultra-conserved element locus uce-4220,
            sequence.
ACCESSION   KCLA01003044
VERSION     KCLA01003044.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49543upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-4220"
BASE COUNT          176 a          188 c          188 g          206 t
ORIGIN      
        1 aaaaaagccc aataaaagtc aaatgtgtct tttttgatca gcagcaaaaa gacaaagacc
       61 agccctttaa gtcagatgct gtaaactgac ctttggagaa aaaggagagg tttgagcggt
      121 tttccacaaa tgctaatggc ctagaaaaca tgtttaccca gggctggggg aaggctgctg
      181 tgctgctacc agctcaaaat gtccggaatg acactttcat tcacagatgt ctttcgtctg
      241 tgcctcagag gtccagggtc aaagcagcac cggtaggcag gtaggcaggg gcgaaaggtt
      301 tgatcagtct gtgatggctc tgctcgctct gcatttgtct ctgaggtatt gccgcccggc
      361 ggggacagtc gggctctggt cctactcact tcctattatc catgtgactt gtctccgcca
      421 cgctggagtc actttgattt gcctgatgta ctgcttgaca aagctgggtg atggctgaga
      481 agtggatcca gctgctctga gaagcgcaca cctgacatgc cagtcctggt gcgggcacat
      541 catggggagc agtttttaat tcaatgtaat ttatgcattc ttgcagtcct gtgtgtgcct
      601 ggcctgtcag ccagtgccta gatgaaggct gacagttgtc atccagggcc tgaaggtagc
      661 ctcacataat gacacattag acatactaat gatgttttct tctggcataa tgttttcttc
      721 tcaactttcc tctctcctcc ccccactccc cctccctc
//
LOCUS       KCLA01003045             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49559upu ultra-conserved element locus uce-1880,
            sequence.
ACCESSION   KCLA01003045
VERSION     KCLA01003045.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49559upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1880"
BASE COUNT          257 a          124 c          134 g          218 t
ORIGIN      
        1 aagataaagt cattatgtag gatgattgga gtaatgatgc aaggctaaca cttgggctta
       61 cttatttcca gactcatttt ccctgtttgg caggaaactt gttttgtaag acacggaaca
      121 gtcctaatgt aacagcatag caactgcaac ttaaaacaga acaagtcagt taatggactg
      181 ttagaagagt tttgctgtat aacagcattt agatgcctgt atttaaaaaa caggtggata
      241 atccaaacgt tcagttacta ggacactaac agttatgtcc atagcaattt cgtttctgtt
      301 ctttaaacaa atcatcactt gcaagcacta atgttaaaac cagaaagcca gtctagtaca
      361 cagtggctat aaatgccaaa tcaattttca gcagataata aagtccatgt tttacaatca
      421 gcaatgcact gttttactac ccaaaatgta agctaataat atatagctct gctaaatgga
      481 aaatgcagat atgctgtaaa gaaacaggct ggctgtggga tgatggatca tttctactgg
      541 gaccttctta aagctatgtg caaatgtttt gaaaatatca catgatgtgg ccatgtgtta
      601 aaaattacag ccagttaagt tctctgctaa gaaaaatatg tgggcaattt atgaaatgca
      661 ctccaggatg aagatatctt aagtaaaacc agattttgaa aacaaacccc attttttttg
      721 aaacatgaac tta
//
LOCUS       KCLA01003046             827 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49574upu ultra-conserved element locus uce-2657,
            sequence.
ACCESSION   KCLA01003046
VERSION     KCLA01003046.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 827)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..827
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49574upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>827
                     /note="ultra-conserved element locus uce-2657"
BASE COUNT          195 a          176 c          183 g          273 t
ORIGIN      
        1 gattgaatag aaagcagtct ggagagttag ggtcttgcca gtgtgatgtg aataatgtgt
       61 actacaggaa tgaatgtctt ctttcctgca aagtaattta catgaaagcg ttgccgggac
      121 tctcagcaaa agctgtttgg aaagggctgt catgtttttg gaatgaaaca tagtctgtgt
      181 ctgagatgcg tgtatctcaa ctctttcagt gcagcagcaa caaaaagcat cacactcaaa
      241 tgaactgcgc acaatgcaca gaagttttcc ttctttattc tatactgaca gccttctttc
      301 tgctgtattt ttaattaatt gtacaaaaac agagcgctgt tttcctcttg tctcctgctt
      361 ccaacaaagt tttgttgtca tttgtctgcc ctacgaactg gactgtgtat aaagatataa
      421 aaacaatatt tgcttttaag gttctcagat acagcacctc actcaggtgg gaattgctag
      481 caggatcgga ggtcaaccag tggagatccc ctcaggcaga gcagggcatg gccagccggg
      541 ggggccaggg tggctgcagt accgtggaga ggatgaatgt gctaggcgag atgcagtgag
      601 tactgtgtta cacatttgca tagtttctga agtagtgata tgttcgggtt ttttttttcc
      661 tgcattactg ttcggaactt cccccccccg gaatactttc agttgcttct ctgacattct
      721 tagctttgtt cctgaaccct cgctagctct tctaagtttt gcttgttgct cttttgcctt
      781 tgcttctctt taactgcttt ctctcacttt actctaacct ctttttt
//
LOCUS       KCLA01003047             608 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49590upu ultra-conserved element locus uce-5064,
            sequence.
ACCESSION   KCLA01003047
VERSION     KCLA01003047.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 608)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..608
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49590upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>608
                     /note="ultra-conserved element locus uce-5064"
BASE COUNT          162 a          113 c           91 g          242 t
ORIGIN      
        1 tattgcagtt ttgtattttt gttttttaat ttggattttc cttccccaac aaataactgc
       61 tgcatttcca gtcactcaaa tttggacaga attttacttc ctgtttcaaa ggtcaaggaa
      121 agctgacctc aacagcagtg ttgaggctgc tgaattattc atatcattga ctttgtgtca
      181 gcttccacat ttgtgcagag ggatgtttta ttcatttatc tcatttaggg acctgctctg
      241 cacctgtttc taccattaag taccctgtaa tttgcatttg atgctaattt agtttcatat
      301 cagcctggtc cccccttgtt aatttaattt tctaagaccc ttttcattac agtagaaatg
      361 tttccctctt taaagcaaac atctatacaa gtaattgtat aaactgcctt ttaaataata
      421 tcttttagaa gattccatcg tttaattcct taattcctat aattagccat ggtttgatta
      481 atgtttcaaa gggttaaatt aaaatgcaga attactcaaa tgcatacttg aataattttc
      541 tctctgctga taacagtttc tgcattgctg cttttattct ggtcgtgatt gtgaatattg
      601 catgtact
//
LOCUS       KCLA01003048             924 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49605upu ultra-conserved element locus uce-195,
            sequence.
ACCESSION   KCLA01003048
VERSION     KCLA01003048.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49605upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>924
                     /note="ultra-conserved element locus uce-195"
BASE COUNT          219 a          242 c          245 g          218 t
ORIGIN      
        1 tgtggctacc attttaaggc ggtttttcac cagccctcag tcgggagcag ccaaccctcc
       61 cgctaagcga gcagttggtg acgggaactc cgcacgcacg gcacagatgg gggctgtggg
      121 ctgcagcctt tgctttgtgc cagctgtggg caaggggtgc atgcttgcac acagcagagg
      181 gggaatgcgg ctcgcaccac gagctgccct ggctcagaga ggaggactgt gtcccccaag
      241 aagcgcagct ggcatcggga agcatcgaag ggcttttaaa ggctgcaggg catacgcaca
      301 aggtcacggc gtgaggcagg gtgtgcacaa ggtgaagcct aatgaaacat tatgcggtac
      361 ccttctcggt actcagaata gctccaaggt taagagagtc cgagtcagtc ttctgcagat
      421 ccatttcctc tctccaggct tctcatgtta acccagtgat ttagtactct gcattaagag
      481 caattcacct gcctctggtg tccctgtggc ccagccctct ggggagtgag gtggagaata
      541 aaaagttcca catatggtaa agtcaagctg cttggagcct gctgagtgtc tgctgtgggg
      601 atagcagctc ctgaaagccc cagctggtac ttggaagaga ttctgcatta ctacacctca
      661 gtgcctgctt ggttcccttt ggaaactgtt ggctccacat acgacagcca ttttagatct
      721 cttcaaccct tttctcccgg ttctgtatcc aactgaacag ttggtcctct actgctggat
      781 aatcaaattc ttccatctgg tcctatccct gtggaactga aaaggtgtag tgtgcacccg
      841 gtcccaaaca cataccagga gaggcactgc ctcgcgaaca aaaaagctgt caacaataga
      901 aagccctaaa aagtctattt taaa
//
LOCUS       KCLA01003049             803 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49636upu ultra-conserved element locus uce-3586,
            sequence.
ACCESSION   KCLA01003049
VERSION     KCLA01003049.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 803)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..803
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49636upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>803
                     /note="ultra-conserved element locus uce-3586"
BASE COUNT          204 a          187 c          176 g          236 t
ORIGIN      
        1 taatattcat ccctgcgagt gcctgccttt gtgtgttggc actcggatgt ccatctacat
       61 tggcagttga ctatttgatg tttggttgaa gagtttgtct tccctatgga catacagagc
      121 aaggggaggt ggaaaggaag gagttattaa atgccaagcg gatatgcaat aaatcccatt
      181 gattttacaa actccagctt gtcttcaatc tctttccatt ctttatcctg ggggcattgc
      241 aacaaaaccc tattttaaat accttttctt tcccttccct cttccccctc ctcccactcc
      301 ccaaaaaagt gtcgatattt tatttggatt tttaacttca ctccataaca gttgtttgac
      361 ctcctgactt atgtgagtca cataaattct gggactttat tcaggagcca tgttcctgct
      421 attgaataag caatttggga gggtgaatta atgacttgtg ctgttgctgg aaagtccctg
      481 aagaaatatt aaaattgctt gcagtctgaa tcaatactca ctgtacaccc agcatgagga
      541 cctgggctgt ttaatggcta caagcagcag cacttggtag aggaagggga attcctgtac
      601 acacaacgca tgcaggcaca gacaaccaca gcagtcttcc ctcggcctca ccagtttttt
      661 cagcaatagc atatacttgt gcatgcagcc tggtacaagc tggtgcctgc tgtgccaagg
      721 aaaggactca gagtctggtt ccccagtctc cctcccagga agatgatgca ggttgtgctg
      781 cagcagtctg gggagagaac tag
//
LOCUS       KCLA01003050             769 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49652upu ultra-conserved element locus uce-4042,
            sequence.
ACCESSION   KCLA01003050
VERSION     KCLA01003050.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 769)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..769
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49652upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>769
                     /note="ultra-conserved element locus uce-4042"
BASE COUNT          220 a          146 c          163 g          240 t
ORIGIN      
        1 tcgctccttc aaggctgtct tgttacgctg cagtccatct ttgttatggt aatgcgagaa
       61 tttaacaggt ttattaatcc cgcagaattt attacagtca aacatgagat attattgagt
      121 tgctattgtg caaagcgttt accctcgctg ttggaatgac ttgtcctctg cattggcaga
      181 tgcagaaacg ttcattttgt ttcctaatta ggagagctgc aatcgggaac catgacaggg
      241 ttcagctcct cggtgtacag catgccagct tccatagtgc aggctttata aaattctctt
      301 taattcagga acagaatatc attaactttg taagtggatg aatacaatgg acaagcaatt
      361 taattaactt ctaacattgg atgttggaca ggagacaaaa tgaaattatg cacatatttc
      421 ttatgcaggc agtcaacctt gaaaggggct tgattgtggt gggtcagaca gggggacagc
      481 tctgtccaat tatttgttgt ttagtcctag aatatgaaat gtgaaatttg gtactttgta
      541 aatcaatcat ctcttacttc cgagcactta caaaggttct ctgagataca aagcaaccgc
      601 cagtggctgt gacacgctga acacaacctt ttaccacgcg gtgcgttccc atttggagat
      661 gacctgcatc ctactaaatg aaatgggcat taatgcctcc tcgtcaaatt gaatttgcca
      721 tcttaagtgt attatgtaag aatagacgag tgaaatacta aattggttt
//
LOCUS       KCLA01003051             524 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49683upu ultra-conserved element locus uce-5032,
            sequence.
ACCESSION   KCLA01003051
VERSION     KCLA01003051.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 524)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..524
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49683upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>524
                     /note="ultra-conserved element locus uce-5032"
BASE COUNT          179 a           84 c           94 g          167 t
ORIGIN      
        1 agcaacaatt ttgaaagttt agcaaatcca cagacatcat gggataattt ctgagcagct
       61 agctatgttc tttacttagc agtaaatgaa taaaaagatc tattattatg acagacgaag
      121 tagcagaggg gaaatacatt tccagcttct agttatgttc aatcctttgg aaaatctata
      181 taacagtctc tgtctgaaat tattaaaaaa tcaatagcac acaccttttt tgagaattgt
      241 gttttgataa cctttctacg agtactgttc tggacatcct tcaccacttg cctggatgca
      301 ttatctgtaa ttgtctttta atagactgag actaaattat gagaaaagaa tggcatcacc
      361 agggagtaag ggttgtcaga taccagtgag atgtaataca tcaaatgctg ttgtgtacag
      421 ccttatctca tagactgttg tttttaggag actttattta aaaagaaaaa caaaactttt
      481 gacccttgta acttattcag agcaggtaga ataatgaatg caaa
//
LOCUS       KCLA01003052             565 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49698upu ultra-conserved element locus uce-3924,
            sequence.
ACCESSION   KCLA01003052
VERSION     KCLA01003052.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 565)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..565
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49698upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>565
                     /note="ultra-conserved element locus uce-3924"
BASE COUNT          147 a          146 c          112 g          160 t
ORIGIN      
        1 agatcccttc acaccctgat aaatatttca tcctgcttgg tgacctaaag ctctggaact
       61 caaaacactg ctctagaaac agagacattc ccacgtctca tattttcctg cttcttgagt
      121 cttaaaacca acatttcccc tctttatatc ctgagcctcc ttggtttcca ggagctttcc
      181 acgacgctgc tgccgtcaga aaggccgctg aggctcggag tcgctaggtt gttcagcttt
      241 aatttctgga gcaaaacttc agcaaacagt aaaacacttt tgtggagctg tgaaagttca
      301 gccgagctgt ttgataaatg agcagacagg caagcagccc ttctttcttt ttttgtatgg
      361 attcaatgaa gcctgcctaa agaacaccac atgctgttcc agctactgat ctaacattcc
      421 gcaacatctc agccttccaa attcccttta attacacatt aatcccaccc ctctctcttt
      481 catttgctgc agacggggtt gggggctcca caaggctgtg ggaaaaaagg cagcgttgaa
      541 gaactatttt ctgaggatgg gaaga
//
LOCUS       KCLA01003053             591 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49713upu ultra-conserved element locus uce-1025,
            sequence.
ACCESSION   KCLA01003053
VERSION     KCLA01003053.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 591)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..591
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49713upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>591
                     /note="ultra-conserved element locus uce-1025"
BASE COUNT          166 a          124 c          142 g          159 t
ORIGIN      
        1 gtgttttccc ttacagtaat tgctgtctga gcctcaaagg ctacaaatcg tttctcatct
       61 catgcatgaa gaattttcct ctgattgatg acagctatgg aacctttcct tagtcactaa
      121 gctgcgctaa tttgcaagct aaaacaatat tagcaaatgg ttaatgatcc atgaaactgc
      181 tgctgcagcc ttcagcgttg tgctccgaag tttcttacaa ctcaagcagc ttacctaaat
      241 tcccacaacg ggcaccaaac gaggtggcgt ttacaacaca acagcagcaa aacgactgtg
      301 gaagtgacag gctcggttaa tgcgggacat tagcgtgagc ggtttgtgta gagggcatac
      361 caacaattaa cgttgaaagg cagagggagt ttggagcagc gtggatttaa ttttcacgtc
      421 gagctgatgc tgctgcacac atttgctgtc tgtgcttaat ggctgcaatt ttcctctcct
      481 tccatcattg tgtgactggc tttgaaaatg aactgggctc attgagaagg aaaagggagt
      541 aaatattgga aacaacctgc gaggatcact tcgagcaggg aaaggaaagt g
//
LOCUS       KCLA01003054            1014 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49743upu ultra-conserved element locus uce-2131,
            sequence.
ACCESSION   KCLA01003054
VERSION     KCLA01003054.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1014)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1014
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49743upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1014
                     /note="ultra-conserved element locus uce-2131"
BASE COUNT          362 a          178 c          179 g          295 t
ORIGIN      
        1 agtgttaaca aaacatgtgg aaagggattg ggaagaatct atgttgtgcc cttaagtcaa
       61 tccagtgaaa ggtggctgca acaaacttcc ttgcccctct ttagaaatac aaatcacctt
      121 tgggatgaca aaaagagtct aaacttcggg accctgagga actgattgag aaaactcagg
      181 ataagtgtaa taggcgataa acccaacatt tcccaagtct tccagaaaaa aattctgtgt
      241 gtctataaaa atccctccca aaaatatatc caaataacct tgtcagataa aatttctcat
      301 tagccttcta taggtaaaaa tgtttagcaa cactaaacaa tacggtactc aaaatataga
      361 acatctagtt taatgcagat taatttttaa caagaattcc tatacagtag gcagatagtt
      421 cccacattcc attgtgattg acaagcctga catatggaat agttcacaaa ttcccaggtg
      481 actgacagat ggagaataga aaggcggata aagttgccta gagagctgag gacgatttca
      541 tattcagcgg ttttgatcaa aaggattcca gatctcacac taaatttagc accgctggca
      601 attagtgcat gatttattca gtcctttcat ttgctggttg acaaatggaa aacaagcaca
      661 aaattaaaaa taagtttatt tccagcattt cgaatattta aaatgtgtgt gcctttgttt
      721 gcacataaat taacatgaga tgaatttata gtgagattaa atctgaaatg gagatgcaag
      781 caataaataa aagatttttt atgtatcttt caggcagaac aggtgtttga attaagaaat
      841 actaatatgt ttagcagcat gactccacct ttagcattag ggagttgatg cttccctaaa
      901 tttagactaa tctttccaca atttaagatt ctttcataag cttccagcat aggtgaccat
      961 ctgtaagtca atactaacac atcctataaa taatagtaaa ggaaagctag tccc
//
LOCUS       KCLA01003055             340 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49771upu ultra-conserved element locus uce-7843,
            sequence.
ACCESSION   KCLA01003055
VERSION     KCLA01003055.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 340)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..340
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49771upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>340
                     /note="ultra-conserved element locus uce-7843"
BASE COUNT           96 a           63 c           66 g          115 t
ORIGIN      
        1 tacttttctt cttagcttgc cctgtgttgt ttatttattt atttatgtta tttccagtgc
       61 tggaaaataa ttctttgatg aatctgttcc tcaccctaaa gctgtctgtt attcatcaga
      121 aaccaggtcg cagttcagtg agcagaagaa aagattttaa tagaagctgt gccaagggct
      181 gtaatgcatc attttagagc tctaattaca ttacaatgac aaatatcaat ggtgacaaca
      241 gcaataacct acatccttta atggctgtgc tgcaaaagga gtttgggtgc tgcgccatca
      301 gattagactt ggtttcaaaa cactgtccct tagaagtgtg
//
LOCUS       KCLA01003056             777 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49787upu ultra-conserved element locus uce-7632,
            sequence.
ACCESSION   KCLA01003056
VERSION     KCLA01003056.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 777)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..777
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49787upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>777
                     /note="ultra-conserved element locus uce-7632"
BASE COUNT          186 a          190 c          199 g          202 t
ORIGIN      
        1 tttggtggct gtggagcggc ccggaataaa cacccgtcga gcggcggtgt cacaacaagg
       61 agccgcacaa ttacggagac aaaacccccc gaggaaatca acgcggggct gattaatatc
      121 caggcctgca gaagacaact gtcagacaat tggtcaacaa ggtacacggt atctgttagg
      181 cactgactaa cccattatga tctttatgaa gtgtcctttt gggggtctag atcttcaaat
      241 atgagttgga agaccctttt cttttattag ttgctaagct ctttatactt ttaccatatt
      301 gcggcaggtt agaaggctga gctttattgt cttatgttat tgaaaatcca gattcccgca
      361 gccttctccc tcaggtcaag atttgtctga gaatacattc tcatttctcc atgtacaaag
      421 gctgtctgga gagaggcaga aaaagattat gactgtaata tacttaaatc caatttattt
      481 gcctgactag aaacttccac acttcacaat tgcttcctac agaagatttt gtgtttaatt
      541 ccttcgtcgc aggaaggaga gggagcgatc tcgggctgcc aacaggtccg cgctgggcgc
      601 acgccggagc ccggcgctgg aagtcgcggg cggacgcctc tattttgcgt ctcggccccc
      661 tgttgctgct caaggagagg ggaattaggg ggcttagggt cccctcctct gcctgggatg
      721 ctgagtggag ggctgagcct cccctgccaa gcccccctga tgtagacatc acctggc
//
LOCUS       KCLA01003057             926 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49801upu ultra-conserved element locus uce-6602,
            sequence.
ACCESSION   KCLA01003057
VERSION     KCLA01003057.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 926)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..926
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49801upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>926
                     /note="ultra-conserved element locus uce-6602"
BASE COUNT          259 a          185 c          210 g          272 t
ORIGIN      
        1 aggattttct aggccttcct tctccccaca gccaagcgca cgggaactgg gggatctcag
       61 ttgctgcaat aaacgctgtg aacccagcac aaactgccag atctgataag cagcaggctg
      121 gctgcgggca aggctgctgc tgcaggagat gcttgtttct gagccctgaa cgagaggcgg
      181 tatcgcttct tttcatgcag ttgtcatatc ctcttctagc atgtttatag taaatactgt
      241 agctggctat ttccccttcg gcagattttg aacgtttgca agtctaaact gcaaatgtgt
      301 ttattgctga gatgaggctt acatttgaaa ccagttcctg aatttgcaac ttctttcacg
      361 caagcaggat cagtccaagt gtggtggagt tgagtctagc gaaggcctct tcctgtcata
      421 aataagatta ctttcatttc acttgtggag tgtgttattc ctcagagtaa tgaatttcct
      481 ctgtgccttt gagcacataa acatggtttt cattaggttt ctattaaaaa aaaaaggaaa
      541 ggaggaaaat tcataagaag actattaact tcatccatgc agatgtgttt tccctgtata
      601 accgtgtggg atgtaaacag cttctttgcc gaggactgca aactgcagta aatgaaacag
      661 ttctgcagac ctggattcta ctatcagaaa gcaaaagtag gtgaattctc aaactacttt
      721 gctaggaggg aaaacatcag attaaatgta gacagacaaa tagctctggg ctttccactt
      781 aatccataac gtatgtgata ataacggttt gaagacatag aattagcgtt acagctaaga
      841 ggctgagcat tgctggtttg gtcttctaca ggcgatgtcc ctgcagttgc agagtaagga
      901 atagccatgt ttgtaaatat ttcact
//
LOCUS       KCLA01003058             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49816upu ultra-conserved element locus uce-6584,
            sequence.
ACCESSION   KCLA01003058
VERSION     KCLA01003058.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49816upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-6584"
BASE COUNT          216 a          135 c          116 g          242 t
ORIGIN      
        1 tagcactcag tttcaccgta atccaattca gattttaggt tttatttttc tcatattgaa
       61 ataaaatctg tcagcagttc tttaagatgc ttttgaagag accacaacaa ttagtttgtc
      121 aattaaaccc tgaaataaat tagctctgct gctaatttac tgaaagggag agacttctct
      181 attatttctt tttaacaact ttgaccacac tcagtctagg gagctccata caaaagatat
      241 acaggactgg aaaaaaataa ctgattaaat tttaagcagc tgctgggcag atagtttgcc
      301 tgaggcactt ttgtcagttt caaagggtcc ttttattaat tttgcatttt gtattttgtt
      361 agtggaaaga gctcactctg ttgggactgc caaaagctat aggcagcgaa tcttacagca
      421 gcaaagagga agctgtagag catgccaagt agatttagca cactgagcac tctaaattac
      481 atttgtttta tcagccctaa aaatatatta acttcaggtg taagttctct gaataaagcc
      541 ttaaagctag tacatccagt tcctcctctg tttatataag gcttttcttt gtctataaaa
      601 agaaaccact gtactctctg ccaaatatct acccatgtaa tttaaatctt ttcctcttac
      661 gattgttggc acaatctata ttggtctgtt ttcttacccc ttactgaaa
//
LOCUS       KCLA01003059             980 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49831upu ultra-conserved element locus uce-6127,
            sequence.
ACCESSION   KCLA01003059
VERSION     KCLA01003059.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 980)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..980
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49831upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>980
                     /note="ultra-conserved element locus uce-6127"
BASE COUNT          320 a          211 c          174 g          275 t
ORIGIN      
        1 tattacatgt gcacacacac ttcaaagatt tcttgttatc ctcccaaaga acacctgtca
       61 ttcactatta ctatcatagc tatgtcttga tcataagcca aaatgccatg cagctacata
      121 aaatagaata tacgccttat tagaactgaa aagaggcaac ttattactag tagctaggaa
      181 tcactatgct atagggatcc agaaaagact tcaaaaacta agttgctgga tttataaaga
      241 taagtgtatt gcaaaacaaa gtataataaa tttatgtcaa aagcagcacc aagcttgagg
      301 aaaatgacat agctctagcc tgacagtcaa ctgtaaccag ctcagctaaa gagagatttc
      361 catttcttgg cgcagtaaca actcctcaag cagagagggg ctaagggtga gattttttgc
      421 tctgtaagta acttaatgaa tgaagtacta attaacatta tggcattgat aaatggagag
      481 agagattagg gatgtactcg atattcaggc cttcccagat ggaccgtcaa agccacatta
      541 attcctatct cattggagca tctgcttctc ccataatcca ttgccccttg gtacaaacac
      601 cacaaactgt tgtgactcaa ttcgatttat atcaatctaa tttcttttaa tccaatttgt
      661 attcctatct actaccttct aatcacttaa atcttcagcc tccatctggt aaattttctc
      721 tcaaaattaa ccgagcagat gcctctgcaa ttgtcttcca cagccaggct aatcatgccc
      781 tcgcagtggc ctacagagca cgctgaatag gtacgtgact tacagcactg cccttcttat
      841 tacaaacatg gcgatgcagg aaggccattt tgtctggcat taattggtta atttgcataa
      901 cactgccagg gaaagaggcc taggaaacaa aagccaagag taaaaagctt cgaggaggca
      961 gcatgacatg ttcatcattt
//
LOCUS       KCLA01003060             792 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49846upu ultra-conserved element locus uce-5135,
            sequence.
ACCESSION   KCLA01003060
VERSION     KCLA01003060.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 792)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..792
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49846upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>792
                     /note="ultra-conserved element locus uce-5135"
BASE COUNT          259 a          144 c          154 g          235 t
ORIGIN      
        1 agattttatc tatagatgcc acatttgcat ttccagagta gtgcatgctg aatgcattta
       61 atatagtcac tcctcaatga aaacagcagt ggtggtggca gtattaaagt ggttggcaag
      121 gatgcctctg cccaggccac cacatagcaa ccactatgtt tctaaggaca aatagctctt
      181 gcctgcccta agcaactgga tgagaacatc aaaacatgcc ttgtgagaga cctctaatac
      241 ccattagtgt aggcaactgt tacctccacc atgaatgaca cagccctaat tattaaggta
      301 attagaagtt ataacactgg caatattaaa gagagaactt ctaaagccca ttaacaatgt
      361 tactttaagt gatctggctg tgaactgttc aaatctctaa ttacattata tgtctgtctt
      421 aaagggtgat gtaattaagt gatgggagag ggaatgaata tatagtgact actgtgctat
      481 acattttaag tactattttc acagaaacca gctccagtaa tgtcattatg tcatttagga
      541 gtggggtttt tgcttgactg taaaccacat gtagataaaa aatagttatc ctcagaatat
      601 gtaaaaatga tatatcatgg tttagtataa ctatcaaaat taggttggat tggttgcaat
      661 attcatgcat gacaaagaca ttggtgacgt attcatgcca ccttgaacag tactgcgctt
      721 tcataccacc catgacaagc aaagaggata aatagcaata tctcatgtgt cctccatgga
      781 ggaaagctat tt
//
LOCUS       KCLA01003061            1057 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49862upu ultra-conserved element locus uce-683,
            sequence.
ACCESSION   KCLA01003061
VERSION     KCLA01003061.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1057)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1057
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49862upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1057
                     /note="ultra-conserved element locus uce-683"
BASE COUNT          340 a          230 c          178 g          309 t
ORIGIN      
        1 agataactgc tctgaaaaac aaatgacttt gtagtagatc taatgaatgt tttctataag
       61 acaacttgat tttaagatgc tatttcacaa tttaagtttt tgtatccctt taacatctgt
      121 atatctggtc aactttctat tagcaattcc atcctgagat acagcagtga atacacactt
      181 tcttcagtta gtattgaggt tttagggtct gctccagctg tcagatagaa ctatttgatt
      241 ttcttcccat ttcttttcaa tcttgcccta acatcatcat catcttgact ttgagaaagc
      301 agcaaagaga taataaacac atctatttgt atatattaaa attgtttctg ctcatatgaa
      361 ggcataagca ctctaaagta ccatccctga accgtttacg gttttcacaa aaagctgctt
      421 ttaaactgtc tagcttcctc tcacctgatc ctataaacac tgctggcaat ttttccccca
      481 tgcctctaac atattttcac ttagcaccag tttgatgtat aagatctgac agccaggcag
      541 ttataggcca cctgcatcac tgtcaccatg acaacaatga aagacaatcc atgatcccat
      601 gccctggtca cacgtttcaa tacagcttat ctgtccaaag ccactgagtc taatggaaga
      661 gagtaattac aatcttccac tcattgtcaa aattctcacc atataatgct cttcaaaatt
      721 attttattcc tctcacatgg gtgctctgta aaaaaaaaca gaaaccaaca gacaaccaca
      781 aacacaccaa aaaaccaaaa taaaccttag gtaggtttgt gaggaagaaa aacggagaaa
      841 agcagggcta tgactgatat aaaatgtaac agggtgataa aaatgtctct tggctgtatt
      901 caaggagcaa gcagaagcag ggggatgtac cagccactaa gtgggatatg gagggataga
      961 gcatcagtta agatcacttc agcttcgcac tgaaggtgaa gagaggatat gtccccctat
     1021 cctctgccct gacctcacct ggagtattac atccagt
//
LOCUS       KCLA01003062             973 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49878upu ultra-conserved element locus uce-4293,
            sequence.
ACCESSION   KCLA01003062
VERSION     KCLA01003062.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 973)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..973
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49878upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>973
                     /note="ultra-conserved element locus uce-4293"
BASE COUNT          345 a          165 c          180 g          283 t
ORIGIN      
        1 aaagaaaaca gacacacaac cccagaaatg caattctcag aactgagtat acttgtaaaa
       61 aacatttgta ctagcttgca gatttcagta agttaaacat agcttttaga tactttgtct
      121 tttttccaaa gaaatttccc aactggcatg taagatcaat gaagcaatac cacagtaata
      181 attcaattga tcctactgca gtaatgaaat tgtaaataga aagacagcag gcagaagacc
      241 tcagactttc acttgaaaca aaatattcaa ccttatttag cctgtttttt ttttgttagt
      301 ggaagagtag ccccacttgt caatcagcta acttgcagtg ctaatagatt ctggtgttta
      361 gggggtcagt gcagaattta atttaacaac ttacaatacg cccacatgcc cagaaaatgt
      421 ggacagcttg atagggttca ctgagccaaa gaagtaagac caaaacagtg cattaatgta
      481 taggggaaga atagttgcaa tcagttccct tgtgaattgg acagagaact tggagatgaa
      541 gcaattatca gccatcgggg attaatagta aagtgtgaat gccaagctgt atatgttagg
      601 ggcagaatat gttgcctata gaaaacaaca aagagcgttt cttactatta agtgagatta
      661 aacgtaatgg cctgatttaa tcacaaaggc agaattaaat tcagatggca acttcaaagt
      721 ggacacatgc acagagccta ctgcatacat ttacatatag ctggcatagc ttggcttgca
      781 tcacaatggg agaaagtttc tttggccact taaacaattt tctattcttg gctttttgtt
      841 aacattcact gtatttagcc ctaaattgct tttagttaat aagatggagc taagagttat
      901 atttattcat ggaagctgta ctttataatt ctttcaagta aaaaaaaatc tgcaaaaaac
      961 aactaaacaa aaa
//
LOCUS       KCLA01003063            1191 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49893upu ultra-conserved element locus uce-191,
            sequence.
ACCESSION   KCLA01003063
VERSION     KCLA01003063.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1191)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1191)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1191
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1191
                     /note="ultra-conserved element locus uce-191"
BASE COUNT          365 a          225 c          268 g          333 t
ORIGIN      
        1 tattaagcat ccaaggctgc accatgggca aacaaacatc agggcgacca atgctgtgcg
       61 tgaaacactt tttcattgcc tcctgcgtgg ttttgctttg ctggatttgc tgttcttgac
      121 atgctcatag gtagctgtct tgagagggaa gaagacactt acctgagatt ccttcggcac
      181 aaagctgctg tgctgatatt ctgtcaacac cacagccacg tctctgaaga gcctctgtgc
      241 tcttcagctt ggtccaaggc ctaccttagc aggcatgggg cagttgtgtt gacaggctga
      301 ggcataaata acccttgagg cacaggaggc gcagaagtaa tgaagtgcct tgaggaaaaa
      361 gtctttacta tcaagggatg gatccactcc cccctgccac aaaccagagg tcacgtggct
      421 gaggaatgtg tatccaaaga taatgctacc ttcagagaac tctacttaca ggtaagtaac
      481 tcttctttaa aggaggtatc tttgtgtggc agactgttta tgggagcaat ttgaattgaa
      541 ctttaaatga aaaaggcata tctctgtaag tggtaataat tttagtcatc tcgctgtggc
      601 taggggttgt ggaattcatt agcacagatt aacatataaa gtgggtgaga tatctaatag
      661 caaacgtaga ggtttaggga ccttaattca tcactgaatg aacagcgtgt acagtattag
      721 ggactatgaa atttttaatt tacacaaagt gtccaagaat atagggaata aatttaaacc
      781 caaaacagat aatggagctg tgccctgcct agctggcaag ttgaattgtt tttacactga
      841 gtgaagaaag ctaattatcc caagcacaag gagactgcta aaaataataa gattataaag
      901 aataatttgc tgatataatt acaacaaaat tgggtacaca caatcgtcag atacatgtat
      961 tgcttgacct gggcgagaaa gtgaaataaa tccttcctct atagccttcg taaatttgtt
     1021 tttatcatct ccaagtggtg tttgcacagg cagcacaatt tgcatgtgta atgtggctgt
     1081 acaaattgac aacaagtaaa ttattcaagg aaataggctg gtcgtgggtc tgaactatct
     1141 cgcaaagcct attcattttg aagaatcact gagacgtgaa gctcatacat c
//
LOCUS       KCLA01003064             573 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49908upu ultra-conserved element locus uce-7849,
            sequence.
ACCESSION   KCLA01003064
VERSION     KCLA01003064.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 573)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..573
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49908upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>573
                     /note="ultra-conserved element locus uce-7849"
BASE COUNT          187 a          123 c          115 g          148 t
ORIGIN      
        1 cttccccgag acccttattc aagcaaacaa aactacaaga aaacttgtag gaaagaaaaa
       61 ggtaatgaac ctttgtagtt aattacaaac tcaaggcagg gataggctgg caccgtaagg
      121 taagataggt tgcagacagt agtcctttat ataaaagcaa atgtcaaaag aaaagctctg
      181 atatttggtc gtgggctccc acttttcaca taggcatttc ctaaatccat gtttgatgag
      241 cttttccagc tataaattct gtaaattccc tctggagcag tgcagagtgt gcttcatgaa
      301 aatgtcatct gccagcgctg caattactca cactccagca atcatgtgca caatgcagaa
      361 tgggtcgaat tcaggtgaga acgagaacca gcaatcaagc ctctggaatt gagaacaaag
      421 ccattttctt tcatttgcca tcaacacaac catcaaggcc ttaattataa ggcaagtgtc
      481 aagcctggct gctgaaaggc ttattattat acagctcagc ttcaaatcag ctttgtattg
      541 atgaactgca aaaatgagga agccagcttc gcc
//
LOCUS       KCLA01003065             339 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49923upu ultra-conserved element locus uce-1765,
            sequence.
ACCESSION   KCLA01003065
VERSION     KCLA01003065.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 339)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 339)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..339
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49923upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>339
                     /note="ultra-conserved element locus uce-1765"
BASE COUNT          129 a           62 c           51 g           97 t
ORIGIN      
        1 ttaaaaatac atttgactta attacagcca atccttaata ccagcaaaca acccattttg
       61 cctactttgc agcataaata gccaccagcc tcatcatttc ataaagagtt gtttttctac
      121 atgatgttct ctatgtgcag aatgttaata gctactatag ctgaatatga ataggctttg
      181 tagctccact tgaaatatag aaaaatggcc cagacattaa aaaagataaa agggaaaagg
      241 gcagtaatga atttagagga aaatgaacat taatggtact agcattacct catgttccac
      301 ataacaaatt attggaaatc tgtcaagcac accaaatta
//
LOCUS       KCLA01003066             872 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49939upu ultra-conserved element locus uce-1963,
            sequence.
ACCESSION   KCLA01003066
VERSION     KCLA01003066.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 872)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..872
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49939upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>872
                     /note="ultra-conserved element locus uce-1963"
BASE COUNT          247 a          164 c          159 g          302 t
ORIGIN      
        1 ttttaaaggg aaaactgctt ccagttgaga gctagcctca actagttctg ctgtgactca
       61 gcttacttgt caatatactc ctctgttcat aataatgagc tgttttgtgc aaagcagctc
      121 attattatga atgtaagggc atgtttggac tagtaaagca aatcataaaa attgctgccc
      181 atgtcacggt tttcctttgt caatacaaga ttttcctcag ggtcaggaac aattattgac
      241 cagaaaaaag tctcaagttc tctctggaaa ttttacctga cgacattgga agtagaggca
      301 caaagttatg aaactaaaag tatgtgtggt gagcattatc tgcgaggtct tttatgttaa
      361 agaaatcatg acatctgcca atctttcaaa ttccaaaggg taaagaatga ggtctgttag
      421 cctgtcattg aacatgacag gcttaatgtc aagtttataa cagaaaaagg gcaatcttat
      481 tgtggtttat tcagttttat gttgcttgtt cagtagaaaa gctcattttt tatctaattt
      541 atagcatttg aaataccaaa cagatttttt acatatctcc tgagctcaca gctcctcttg
      601 actacccctt agtcgttcct ttagggaaca gtcttaaatc cttccaattt agcatctatg
      661 tgagaccaga caattgtttt acttgagcat atccttcagt tgttatagag ctgtttctaa
      721 ctccaaacat tttagtttaa ttactgctta gaatatttgc tatgttttta tctaggttgc
      781 ctctcacttg agcccattgg gctgaagaaa gaattactcc ccatgctgtt ctgcagccct
      841 tcttgttcag atctgtaatt ggccctgtgt tt
//
LOCUS       KCLA01003067             233 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49954upu ultra-conserved element locus uce-6702,
            sequence.
ACCESSION   KCLA01003067
VERSION     KCLA01003067.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 233)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 233)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..233
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49954upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>233
                     /note="ultra-conserved element locus uce-6702"
BASE COUNT           62 a           52 c           42 g           77 t
ORIGIN      
        1 tgtttgagta actctccacc ctgaagtacc tgaatctttc cccctccagg ctatgtgcat
       61 ttgcatttta tctctgccac tcttccacac ttttatttca ctcttgaccc tgtttctagg
      121 agatgtgcga gtaagaagtc gggcaggatt tgaaacagag agaagaggtt ctcatccata
      181 cattgatttc cgtatttttc actgtaagta tttaaaagca gataaatgac aaa
//
LOCUS       KCLA01003068             688 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49984upu ultra-conserved element locus uce-5085,
            sequence.
ACCESSION   KCLA01003068
VERSION     KCLA01003068.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 688)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..688
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49984upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>688
                     /note="ultra-conserved element locus uce-5085"
BASE COUNT          173 a          136 c          145 g          234 t
ORIGIN      
        1 ttattatctt attattctct ggtaggatgt aatgaaagat ggagctaatg ctgtggcttg
       61 cattggtagt attttatccc tttaacctta acaggttata agaatttgca tctgagtggg
      121 tcttcccaaa tttttttctt gtttgtaaga gttcgcgtgc tgtttttata atgttttcat
      181 tgatgtcaag accttggtat aaaaacaaga ctagcactgt acaaatttac cccatggtct
      241 cctgtgtctt cctttgcctc tctccttgag caactggcat agctgcagga ctgtttactc
      301 cacggcttat ttccccttta tctttgatgt cccaggatgt caaaggctgt gaatttaata
      361 ttgattttat aaagtacttt tactgtaaca tgtcagttag gattagcctc aacctcgagg
      421 aagctcaggc actgagctgg atttgcacgc aatgtggctc ttcagctctc agactctttt
      481 cccgagcgaa tgctttattt ataagagtga cagtgtgctg tgaaagcagg gatagcacac
      541 agcccccagc tatctctgtg tcttgtatac acagcgtcag tgccctgtgt atacattagg
      601 cttgaaaatg taagtggatc agagagacgt atcatttgct ggtatgtaaa cagacagatg
      661 agtttataga tcgcattaaa ccccagtg
//
LOCUS       KCLA01003069             845 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 49999upu ultra-conserved element locus uce-6081,
            sequence.
ACCESSION   KCLA01003069
VERSION     KCLA01003069.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 845)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..845
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="49999upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>845
                     /note="ultra-conserved element locus uce-6081"
BASE COUNT          232 a          216 c          179 g          218 t
ORIGIN      
        1 tagtcactat caatttaatc acagaaggtt acagctcctt tctaaaggtc tttacctggc
       61 agcagtacta ctagggacaa actctattct tcccggtttt attttgttct ttttcttccg
      121 cttcttctgg ggggttctcc accagctgta ggcctgcaga cactctcttt ttttcgccat
      181 caagtcctgt tggaagataa aaaaaaatca cctttatagt ttttagcctt atttacattc
      241 ctccctccca ctccccatca ccacaggtga tttccccata ttcaccttgc ccttgaaaga
      301 agcctggggt cccatttctc cctccgcctc ccatgaggga aagcagcctc tggggaaaac
      361 gcctggcaaa aataacagag ccaaaggatt gtatgaacag ccatattccc ctgacttgtc
      421 aagctggcta aaggactcct ctgggaatta gggaaaaagc agacagccct tcgacgttgg
      481 ccaatcccaa gtgtcaatta gcttcaggac tggtccgctt gagctccagg actgaaaaat
      541 ccctgtggca gcagcggagt gatgaagtgg cagggaaatc atcactcttg ctttgaagga
      601 atcttggctg tgcctatctt tcctcttcta ggaattcttc tgctcttatg tgagatgcct
      661 ctccttacta tccagtgtaa gtcactctcc caggccagga ccaatgacaa gaggcccatt
      721 aatggaatgt aaggagaaag cagaccagga acaggcacta gcttggctga gggaaaaatc
      781 aaacccagac gcaaggccag gaagaaagag gcgtaaaaaa agcctcctga aaaagttaaa
      841 gaaaa
//
LOCUS       KCLA01003070            1006 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50015upu ultra-conserved element locus uce-3059,
            sequence.
ACCESSION   KCLA01003070
VERSION     KCLA01003070.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1006)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1006
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50015upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1006
                     /note="ultra-conserved element locus uce-3059"
BASE COUNT          357 a          230 c          146 g          273 t
ORIGIN      
        1 tctgaagata cgaagaaatc ctgatttact aagcagttta aaacacaaac atgaaaaaac
       61 agagtcagaa gaactggaaa agccacttga ctagatcttc tgattattca ccagtacagg
      121 ttgttaatta ggataataaa aaaccaccct gttgctgcat tcatacaggt tccttgatga
      181 ctacttctgc ttcccatttc catcagaagt attatggcta ataaaccgct aaccttataa
      241 tagttcatca ccgcattact tctgatgtca tgccacaata tacagaacaa tgtatttaga
      301 agtgaaactg gctgttcttt taacctctat ctctgttact aaactttaaa aaggttcaat
      361 tatttcagcc actaccaaaa ccgtcaggaa gaccacatat gtagtgagca taagagacag
      421 aagtgacaga aatgtataaa atcttcatca catagctgac accccatata tcaaagccct
      481 aaatctcatt ctctgcttgc ctccaatttc catcaaagcc tgccagctgc acatttattg
      541 agaagtttgt gatctgacag ccactgtatt accaacatta atgatgcatc agcctctaga
      601 attactgggg aaacagtcca attgatttta ttattataca gagttcctca catttcattt
      661 caagcagctt cctgccacaa attctagcaa taactaaaaa tgctacacag atgatacaca
      721 aactgctagg acaaaatggc accatagtgt catgccaccc agttctccct ccaggaaagc
      781 cccaaatcac tcagacacca ctgtgtaact catgagttat tggtcgtttt ctgaaaaagc
      841 ttacacatta caatgcaata aacagcacat cactaataat cactaatttt gctatgaaaa
      901 ctccaaagac acaataatgt cttacgaagc cctgctattg acactagata aaaatagaac
      961 atatagattg acactgtttc cacagaacca caaagaaaaa gagcac
//
LOCUS       KCLA01003071            1147 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50030upu ultra-conserved element locus uce-5991,
            sequence.
ACCESSION   KCLA01003071
VERSION     KCLA01003071.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1147)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1147)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1147
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50030upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1147
                     /note="ultra-conserved element locus uce-5991"
BASE COUNT          324 a          224 c          255 g          344 t
ORIGIN      
        1 aggaaataaa tctgaaatac ttgttccccg cccatttttt tcttcaccgt tctcatccat
       61 aagatataac ggatgctaat acatctcagg catcttaaaa atcataactt ttgcatgatg
      121 gctattgtct attgctgcga gtcctcatga gtaaaaaatc cttcctttag acctagactg
      181 tttatatttt gttttttcag tacagtaacc ctggatgcaa atgttttttc tgttgacttc
      241 tctatcattc tctgatgtct gcagatattt gatcagctct ctattctaag cgtagcctgc
      301 cccttctctg gcagctacac acatgggaaa aaaaaatgtt atcaataagt tcagaggagc
      361 ctcagcagac ccggagaaat ttcacacaaa cataaaacaa accgtaaccc ctgtgccggg
      421 gaaagtttat actgtgccag attttcgcag ctttcttgtg cctttggtgc ggtgtcagaa
      481 gtgcaggtga ttttaatttt gttgctcagg gaggactgga gaagtttgga atttgcatgc
      541 atgatcagga cctgtgtttg ggaaaatgta aactcatcac agtggaaaat gtgttgtttg
      601 gagtctgagg gtgaaaacaa agctgaggat tttggagaga ctgcctgagc cagatggcct
      661 ggtgcattcc cagtctggca gcccaactgc tccctcctgt ataatataca gccatttgtt
      721 ctgggatatt tacgctagag ctgtttccat gtgaatgttt gaaaaccatt aaaaatgaac
      781 atattaggag agataaattt atttaatttc tgtgaatacg tcgataagca ggctgtgtat
      841 caaaggcaga gggggaccgg aaaaaataat tggatgcttc tgaactgtgc attcagagac
      901 acagtgagaa ctaaccgtcc ttgccccggg acccagtgct gtgctgcttg tctgggataa
      961 acctcactgg gatgagttga aattttgcct ggggaagggg taaaaactgg gataattaag
     1021 ggttaagtac tcaaagccaa ataaatgtaa ttcacagtat tttctgtgta gaagcacagt
     1081 ggatacaagc ctaatcctct ctgggtgaaa ttctggccca tctgaagtca attgcaaagc
     1141 tcctatt
//
LOCUS       KCLA01003072             564 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50046upu ultra-conserved element locus uce-6176,
            sequence.
ACCESSION   KCLA01003072
VERSION     KCLA01003072.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 564)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..564
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50046upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>564
                     /note="ultra-conserved element locus uce-6176"
BASE COUNT          173 a          106 c          110 g          175 t
ORIGIN      
        1 gaaagcagcc tgtcctttct ctcctactgc ctcactgtat gtgtaaacca gtgtgcaggc
       61 aagagggggt taattcaata aaataaatat aaaatactct ccaggctgtt ggacagagct
      121 ggaaggggtc agaggttgct gagctgcttc actagcacac taatcgattt gctgtcaagg
      181 tagtggtgct ggggtttcaa gtaagagaag aattgagtgc cgctcgggcc caatttccat
      241 aattgctcac tgcctttagt gtacaacctt ttatgaaaca caaaaaatat atcactgaat
      301 tgtattgatt agccattggt ctgaataatt cacttagtat ttattacctg accctcagag
      361 gttaaataaa tccactatct aagtttggct tgtgagaaat attacttatt cattgaaatg
      421 tggactgatt attacacaat agcagtgtat ctttattgtt ctttttatct cctcctggaa
      481 aacttagtcc ccactgcatc ttaatggcaa caagttaaaa gaaatattta tggatagtga
      541 agagcatttc caaaataaac acca
//
LOCUS       KCLA01003073             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50062upu ultra-conserved element locus uce-3973,
            sequence.
ACCESSION   KCLA01003073
VERSION     KCLA01003073.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50062upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-3973"
BASE COUNT          197 a          136 c          162 g          185 t
ORIGIN      
        1 gggttgccat ggctacacgg gcatgtactc gggagcatac tttcaggact tcctagagca
       61 tgttccacag ggaagtttgg agatgtcagc tgcaggtgtg cctctctgat ttccagcttc
      121 tcaggtctgc agcgcttaag gctggaggag gttgccctcc tctggctaca cacacactgt
      181 tcaccaagac tcagaggctg aagagaaatc actttgaaca ctgacgctgg gagctggagg
      241 caattacttg tgattgatag cactaaatat gaaaccacat gtacctcatg gaacgagcat
      301 ggaatcagca gcatattgtt agtgggggag atgaatgggg cttgagataa ccttggcaaa
      361 ttaggcatat gttagcgtta agctttgtca gtaagcaggc tataaattac atattgtagc
      421 tccataaact catctaatga attgaatgac agtggtgatt taaggcagaa taaaactgtt
      481 taacccttct aagaatttag ctgtgtttct gtcttgtgcc cccacccaaa gtgcattaaa
      541 aggttagtgt tttacaccta ctccaaggta tcgtaatcac aacagggaaa cgattcttct
      601 gtccaacaca caaatgattt tagttatggg atgtttaaaa aagaatggaa aaagaatggc
      661 agagttggtc ccctcacatt
//
LOCUS       KCLA01003074            1039 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50078upu ultra-conserved element locus uce-3071,
            sequence.
ACCESSION   KCLA01003074
VERSION     KCLA01003074.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1039)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1039
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50078upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1039
                     /note="ultra-conserved element locus uce-3071"
BASE COUNT          285 a          201 c          271 g          282 t
ORIGIN      
        1 gaagggacct tagggatcat cttttccaac ctccctgcca tgggcagcga cacctcccag
       61 ctagacttag ctgtcactgg gataattgtt tgcttctttt aacgggagac gatgatgttg
      121 aaagggatgc gtttaaatac tgggggggaa tctactttta aaaaaaagag ggctatcaac
      181 cactcgggtg ggcgcagcct ttggtgacgc aggcgttgtc gtaagcactg accgacgcgt
      241 ttgggcgtgc gaaattcaac cagagaaagc gaaaataact ccagccttcc attgccttct
      301 tcaaagtatt gcggagggaa gtttggcagg agctgggaca ggaaattgaa atctgaatac
      361 tattttaaac gggtagggtt aaaggcctct cttttacact agcacacttg ttcttttatt
      421 tgatacttga actctgaaaa ttttctgtga ctttctaggg agaaggagga gcagctgact
      481 cgggtgacag aggtacagag gctgcaggcc cagcaggcag atgctgccct ggaagatttt
      541 aagcagcagg tggagctgaa ctcagaaaaa gtctatgctg aaatgaaaca gcaggtgaga
      601 aggtcacaat gccagccttt ctgaaactcc gtctcagtag gatagcgtat tctgatctta
      661 taatgccaga aacatgcttc acttgagagt gcgacatcaa aatcctgcac aatgtagtgt
      721 ctttgctggc aagtcagaaa gggatgttag cgggtgtttc atctttctaa caaagccagg
      781 attgtcattg ttataaggat atctgcagtc atgatactga ttagggattt ttcaggagtg
      841 agagtataaa gcgttggttt atacacccct gtggaactgc gtttgtaatt ttccactaca
      901 atgtgggttt cttcctactc ttttcagaac gactctgtct tctcttaatg aggtcttgta
      961 atcagtttga gcctaaacag gggcagagcc attgtcaggt gcagaggaca gaaaaaggtg
     1021 aaaatgagtg gcaggaatt
//
LOCUS       KCLA01003075             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50108upu ultra-conserved element locus uce-2445,
            sequence.
ACCESSION   KCLA01003075
VERSION     KCLA01003075.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-2445"
BASE COUNT          217 a          154 c          118 g          185 t
ORIGIN      
        1 gtacaaggaa gagattgtca tcttcaaacc taaatgtttt cactccacag gagagagtaa
       61 gtaatagtaa aatgagacag acacactaat ggacttatcc taagatttct aaaacaaatc
      121 ttgtaattat tttacatttt actaaatgct ttgatctgtc acgacagcaa aaacccaaca
      181 agcatttctt attagtgaat tgggtcctgg atttttcctc ctcactatag cacaagcttt
      241 ttgcaaaaac tgaatgcaag acccctgagg agcatacggg aacagaacca ccaaatgtct
      301 ggttgccatc tgttctaccc atttactctc ccaatatgta aataaacgtc agtgagcaca
      361 gggaccagtg aaacacacag ttgctctgta aagcccacat ttctgcctct cctcctgatg
      421 agcagagcag tggcctcaga agcacgctga gaatacacca tgaaaggctc ttttgggact
      481 tgacagcctc ccctttgaaa caccacctcc ctcataaata aagccctcac tgtctaatgg
      541 atgcactttt tttttcccag tgtacaactc atgaacgaat aaactaatgt ctgaatgaaa
      601 aaataaacta tcctagaacc ctagcagaag tgtgtgtttt tctttacgtt tctagggtgg
      661 gtgtacaaga aaaa
//
LOCUS       KCLA01003076             338 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50124upu ultra-conserved element locus uce-7508,
            sequence.
ACCESSION   KCLA01003076
VERSION     KCLA01003076.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>338
                     /note="ultra-conserved element locus uce-7508"
BASE COUNT           96 a           58 c          117 g           67 t
ORIGIN      
        1 gtggggagag gggacattag cacatgctgg agcgttgtca gtgccgatgt aaatggacgt
       61 gctacatagt caacaagaca cactcggctg cctgcaagtg ggaagtactt aaatcttggc
      121 actgataaat gaaatatttt taagggagct aatcagtgaa aatggggttt catcaggcac
      181 tgacatgtct cgcttgcttc agcgagtcca agagagaaaa atgattgcgc ggtgcggtcc
      241 agagccagat ggaaatgggg aaagaaagaa aggggggcag caagcggcgg ccgaggatgt
      301 tcatggggtg cgagcagggg ggacaggggc tggtgata
//
LOCUS       KCLA01003077             687 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50138upu ultra-conserved element locus uce-7113,
            sequence.
ACCESSION   KCLA01003077
VERSION     KCLA01003077.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 687)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..687
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50138upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>687
                     /note="ultra-conserved element locus uce-7113"
BASE COUNT          200 a          140 c          153 g          194 t
ORIGIN      
        1 cccctgccag tgaaatctag agacagcctg gaaaacataa aaagcccaag attatgttaa
       61 atctctggaa aaaaagaaaa gggaggaggg tgttagaggg agagcagtga aagatcattt
      121 ctttcctaat gcgactgtta gatttggctg ctttagcaat taaacttttc ctttatttgt
      181 tacccctaca gacccctggt tagaatagga tcctgaagtt gagtccgcca gagcattggg
      241 cttacatgat tcaattaacc tttaaggtag ctctggaagt tggtactcta ggagatcctt
      301 ttgttaattg gcagcctgac acagacaatt aagtttgatc agatgaagag ggcatcaggg
      361 acatcattag catactgtac tgaagactac gtggtgtgta aaagttgttt aatttctgcc
      421 aaggaagaaa gcggggggct gggggagccc tcctcacaca tacagggttt tgcttattaa
      481 atatttcatt tcccttgcca taagccatga atgctcccat tttttacccc tctggtttct
      541 tgccactgca gagaaatcca gagtgatggt ttctctctta ccaaaacttc tgtgttttca
      601 tagaatcaca ggattgttag ggatggtcaa aagatcatca gttcaatccc actgccacag
      661 caggatcacc tagaacaagt cacacag
//
LOCUS       KCLA01003078             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50153upu ultra-conserved element locus uce-4631,
            sequence.
ACCESSION   KCLA01003078
VERSION     KCLA01003078.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50153upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-4631"
BASE COUNT          257 a          155 c          137 g          258 t
ORIGIN      
        1 aaaaagagac catcttttct accattgctg gagacacttg tcactgtcta agaagcacta
       61 aacttaattc agttctgtta gagctttgaa cattggtcca caagcagatt cacatccctg
      121 aggggctgaa actgacaccc atgtgcgaag tcctccatta ttgttgctaa ctttgcaatg
      181 agaatcaggt ctaaaacttt ctaaaagtaa atagtatata aatatgaagc ctggagctgt
      241 tacttaagtc ttctaatctc tcaaacaatc attttttctg gaaacaagac tctgggtaga
      301 gtttacagtg gttcctttgt agctgttgct atgttttgct attttagagt aagtaaattt
      361 tatcctcagt gagtgaactg catgacaaac cacaggcaaa cttctgaaaa actgcaaaca
      421 cttagacttt actgcaaatg taaccataac aatccaaagt actaattttc tacatcatat
      481 aatatgtgta actatgcctt agtaacactc atgggaaaca taatttaaca atgcctctat
      541 cttccttacc tcgagatgga aaatttctgt cacatactta acagaaggct ggcagtcaga
      601 gtttcccatg tgctttgctg cattggcttt tcagaaacat cttgagtggt gtttattttt
      661 ctttaaccct tcactagcta tgtgttatct tcactcagct aatgaaaata tgtatcttgg
      721 ctcccagtct ctccttaggt taaaaagaga gagaagaata aaaatttaaa gctcagaata
      781 tctcaggaag atatatgata atgaagt
//
LOCUS       KCLA01003079             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50169upu ultra-conserved element locus uce-1298,
            sequence.
ACCESSION   KCLA01003079
VERSION     KCLA01003079.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50169upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-1298"
BASE COUNT          217 a           85 c           96 g          183 t
ORIGIN      
        1 gtaatacctt tgttgtattt ttatgccatg tattacaaca tgaaattata tttggatggc
       61 acagtaatgg agcgaggaca gggaagtgtt ctaatgttaa gctctctgct agatttagac
      121 attgaaatgc aagaaacttc ttccattcat gagaaaacac agtgttaaaa aattaactgt
      181 aagctgttag atgctttaca cagccccctt ataagaaagg cagttttaaa aaaagaactg
      241 tagtactgtt ttcagcaatt tctttatctc tgttcttcta agtaagaaag cttattaaca
      301 agctttgaac ttaaaatcac atttacaata atgtgccatc aacagtttta taagctaatt
      361 agaaaaaaag attaattaat gactggctgc taataaaatg gcaatcatga agaaagaaac
      421 caagggtgct aagcttcaac taccaccaat taagagctaa ttacaaacaa attatatatg
      481 tgttttgctg tgggctttaa tttactaaaa tggttttaat taaaagagaa aacatgctga
      541 ttaattgaac tgcagaaaaa atctacagta taaactgtgc t
//
LOCUS       KCLA01003080             488 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50184upu ultra-conserved element locus uce-5443,
            sequence.
ACCESSION   KCLA01003080
VERSION     KCLA01003080.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 488)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..488
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50184upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>488
                     /note="ultra-conserved element locus uce-5443"
BASE COUNT          158 a          105 c           94 g          131 t
ORIGIN      
        1 cttctcacgc tagcgcctgc tgaacgagaa ggtcactcag cctattgata aatcactgtg
       61 ccgtgatttc taactgacag ctcaaactaa catcaagctg gatgagagag aacaaaaggc
      121 catcaagcag ccattttctt gacactttta ttcaatcacc agcagattgc ttacgacagc
      181 aatagcagct gttttgtctt catctttcca catttgataa aaggtgtcaa ctcaaatttt
      241 tgtaaataat tcacttaccc ctactgcaca caccagcact gttcagcata tgtattctgt
      301 gtgagcagat cactgaggca ggtcagggct caatgatatc agctgaaggt catctgtgat
      361 ctaaacggaa gcactgataa agctacagtc cctcaaggtc aaagataaga actacactga
      421 gatatttgta atgtggataa aaggttaaac aatagagaga aaagtatggc attgtttcag
      481 ttaacaca
//
LOCUS       KCLA01003081             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50199upu ultra-conserved element locus uce-6371,
            sequence.
ACCESSION   KCLA01003081
VERSION     KCLA01003081.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50199upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-6371"
BASE COUNT          235 a          237 c          202 g          199 t
ORIGIN      
        1 tttagcaaaa cagctcagtc cactccttca gttttggaaa gtgatcagct cgtgctagag
       61 gaagttacca gctcccaggc aggagcatta caacgcaggc ttatttcata agagattaag
      121 accagttttt cagttaagaa gtggattttg caagtgaaac gatgctgtga gttacgatac
      181 tgtgagctct ggatccccga ggaagggaat acttggaggg gtgatgccag ggaaaagact
      241 gtgggccaaa tttccctttc aaagcaacgc tggctaaaat cccagtgaag cctcacagtc
      301 gctccagctc tgaaagggac ccccataggg gacttttttt ccccagaagg caaaactcag
      361 atttccatca cccacgatga aagggttaag tcaagatttc agtcccctgg ttcaaagcgc
      421 ccagcgagcg ctccctgccc aaattacagc agtgcacaca tccaacagat gccgttcaga
      481 caggggcttt ccttgccctg aggtacagtt cagtttgtcc attctactgt gcaattacag
      541 aatcaataaa acatcccttt gaaactccct ggactagtgc cgacacgcag acagtagtca
      601 agctgacatt ttttgctgtt tccgttatta cccccgtcaa gccttctgag aagagagaca
      661 tcaaaaccca ggcgctgcaa cgcgaaggag aaaagcaaag tgtagggttt gtttgtcgcg
      721 tcgcatcgct tcccgggctt tcacacggta ccgggcacac ctgccaacag aacctgctcc
      781 aagtcatcca aacaggcacc gggaagcagc acggttccta caaggatgcg tgacccaccc
      841 ccctctgctt ccaatgcccc aacagccttt tgt
//
LOCUS       KCLA01003082             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50215upu ultra-conserved element locus uce-1689,
            sequence.
ACCESSION   KCLA01003082
VERSION     KCLA01003082.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50215upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-1689"
BASE COUNT          221 a          108 c          120 g          191 t
ORIGIN      
        1 taaaaaataa aaagaggacg tgattacctt gctgaagctg tactttctat tttctcttcc
       61 aaaagagaca aagggaataa aaacttaaaa cccagtggtg acgacagtga agcaatcatg
      121 cagtcactgg atacctttgt ttctgggagg cgtgtagtca tttttacatg tctgccactg
      181 ggtgtcaaac ctttcttttc ttcccctttc cattttggat ggccaaactg attatctaaa
      241 atagaaaatt agcacacaat ggctttactc tgtgataccc cttatgcaac taatgggcaa
      301 atcttgttaa ttggttgtaa atgccagcag gttgccaaga taatacttca gaaataagcg
      361 ggtattctga taattacagc aatcttcatc tataaaagct taagtagatg aagtactggc
      421 tggcttaaaa ccaagattta tcccgctgca ctcgcattaa aaggaaaaat aagatgaaaa
      481 caataatgta gcaaaacaat tatatagcag gaagcgttgt aggttttaga gattgtgaaa
      541 actcagaaag taaaacagtg ctgtaataac cagttatgga aaaataggcc atttacattt
      601 gtgtataatt aaatagtagg ctatgcaatt tcacttttta
//
LOCUS       KCLA01003083             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50230upu ultra-conserved element locus uce-6080,
            sequence.
ACCESSION   KCLA01003083
VERSION     KCLA01003083.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50230upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-6080"
BASE COUNT          193 a          150 c          105 g          214 t
ORIGIN      
        1 tttaagagaa atagaattat ctttaaatcc tttgtaaatg tttgctttca atcattcgca
       61 aaaccttact aaaaatttca agatggatac gttctcccac tgactctgac aaacatctgg
      121 tttacaacaa agccatgtga tgaaattcca tccagaatca catttgctcc tcactgtgtt
      181 ttctcccact atcagtcata acccagaact tctgtgtttt gtctgggata tgagagcaac
      241 gatatgtttt attaggagta acgcatagtc ctctccctta cagaatttaa atctgcgaac
      301 tatgggcaga tatagtcaga tatattgata gtctcccttg tggattctgc tgacacttgg
      361 gtttaattgt agtgaacttt gaattcctat cttaaggtca gttattaact attgatggat
      421 tctccttttc ttcatttaat gctaaagtat tcatactaac caagatagac gagaatgctc
      481 aagaaatttt tcaaaaccat cactgtgcaa gacaccctta cgctctcccc acgtgacaaa
      541 tgttgagccc ttttctaaag gtggtgatca ctcatgttcc acttagaaag gaaaacacaa
      601 cacagtgctg cgctcctgac ccctcgccac tcttcttccc tggtactatc ttcctagaaa
      661 ca
//
LOCUS       KCLA01003084             978 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50246upu ultra-conserved element locus uce-2441,
            sequence.
ACCESSION   KCLA01003084
VERSION     KCLA01003084.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 978)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..978
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50246upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>978
                     /note="ultra-conserved element locus uce-2441"
BASE COUNT          301 a          155 c          220 g          302 t
ORIGIN      
        1 agctgttaat tacagtgcta gctgtaggtt ttaaaagcag ctatgagcac tctttcagtt
       61 cttggctgtg cacttaaatt tacaatagta gtttacaaat tattcttttc caaagcttct
      121 gctggcctga cttctctgat aattcaatag aatagaaggg ttaaataatg aaaattctaa
      181 aacatactag aagtggaaag aaaagtaagc taatattatg gctagatgtt ttttattagc
      241 agctgacctt ctattgctag aaaaaaggaa atcttggcta gaagagagtt caataaatga
      301 acaggctata tattgatttt tcttcctctt ccttgttatg taatatgatt tccatttcct
      361 agctagggtt gctgtcatac aggatggagc tgggatcatg gtcatggaag cgtatgggaa
      421 tgtgtagact aaggaaggct gtcacagcag tcaataaaat ctgagaggtg ttgactaatt
      481 gcctgctaat tacacagtaa attgtctaat taagctgatg gttaattagg gtacgcttgc
      541 acagcagtct tgtggaattt ttgtctgatg tctgggaagc agcttgtgta attggcaaac
      601 tggtaaggac tggcagagaa catgactggg aagcatgctg ccagtagatg acagaataag
      661 gatgcatttg cacaaaggtt gtcatgtgaa cactgaggtg tttgttagcc ttccccagct
      721 acatggcagc gggcgcaatg agaaatgtag ctgaaagcta ctggaagctg taaataaaat
      781 aagatttaat tgttaacact agaaaagcag tgacgtgtac ttctcttatt ttattcaaaa
      841 cttgcacttt agataaacac agagtatcaa aatttctgcg tactgtgatc tgttcagtac
      901 agccacagaa tgataacctc ctatgggatg ctctgtttgt tgatgttgaa aaagtagacc
      961 tgttacgaag gatcctcg
//
LOCUS       KCLA01003085             841 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50262upu ultra-conserved element locus uce-7819,
            sequence.
ACCESSION   KCLA01003085
VERSION     KCLA01003085.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 841)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..841
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>841
                     /note="ultra-conserved element locus uce-7819"
BASE COUNT          251 a          162 c          174 g          254 t
ORIGIN      
        1 aagtctgagc ctgtgacgtt caaaaagctc cacacgtgag agtgactctt agtaagtatt
       61 tatttaccat gtaaaattgg taaagggatg gtttcacaca cacaccttct ccccacagca
      121 tacattgtat atcaattcat tatcttcctt gcatttccct tttccctcat tttttattgg
      181 agggtagtga aagagagtga gttgttgcta ttattacaag gaagattctg gaatctgtga
      241 acacaagtaa tagtacttta aataatgaga aaaaattcca catggaaagc tcatctggct
      301 gtggcagttt gtgactgaat gagagaaaag tgccctagaa gctattcatt aggaattcag
      361 tggaagctct caaacaagcc tggcagaagc tgaaattgaa gtggtctctg acctaatttt
      421 cttctgcatg aaacatctgc atcaaggcac tctttgatgt attccacttg gctctgtcta
      481 cagtattgta tcacatggct tcagtgttgc ttcagtttta aaagatattt ccagcctgta
      541 gaaggtaatg tgatgttact gttacccaag ttaatcactc aatgtgctcc caaaatagaa
      601 acaatagagg ttcagacaac gatgtctgct ttgtagtcgt tgctgcctaa gctcacggtt
      661 taaaaaaccc agatctgtga tattcatctc atgtaattca tcaacaccag ggaggggagg
      721 gagaggggga aactgtgagc cttctgtgta atagtatgtc agagaacaca atgctttaca
      781 tgcgagagct ttgcattctt tgctcctcca gccatacagt tagtttagca cgataaaaaa
      841 a
//
LOCUS       KCLA01003086             805 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50278upu ultra-conserved element locus uce-1263,
            sequence.
ACCESSION   KCLA01003086
VERSION     KCLA01003086.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 805)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..805
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50278upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>805
                     /note="ultra-conserved element locus uce-1263"
BASE COUNT          250 a          183 c          167 g          205 t
ORIGIN      
        1 tcagaagttt cttactgtgc ttcaccaacc accacactaa atgttgagtt ccttcttcag
       61 gtcatagctt aaagggaaga aaataataaa ataatgacag cttttggagg aattgtggga
      121 ctcaaaaagc tttcgaaaac ctggtgtacc tggtgcttaa cccccttacc gctacgcctg
      181 cttggcctgg ccactacgtg tgcaccaaga gcctactcct gtgctggctg gtgcagaagc
      241 aatgagggac aggcgatgag agacaaagca gggcagctgc aaatgaaaat caccctgggg
      301 agggttacaa ctagataaag ttttcgacaa taagattcca gagactgctg actggagaaa
      361 agctcaatat tttagtctca gtacaaattt gcttcaatct tatacaactc ccatgcagca
      421 gcatccacag ctgcatgctg taaacaacaa acaaatctat ttccatcagc cctgctgatg
      481 ctatgagaaa agtgcctgag cataagacat gcacagatgc agagtctcac ctgagcctag
      541 tgctgccctc catttggccc ctctaactta atatcgttgt tacaaagcta ttggtctcct
      601 ggtagcgagc tggctcaatg cagagcctct tcttccagct aatctgacaa ctccgatcca
      661 agaagcatca agggcccaat taagaagaca catcttatca aggagcttat tttgcataac
      721 agaatacaaa tgacgaataa aaatttaatg tttaataact tagtacaaag agggctgttg
      781 atatagaatg cctggaattt ttatg
//
LOCUS       KCLA01003087             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50294upu ultra-conserved element locus uce-1631,
            sequence.
ACCESSION   KCLA01003087
VERSION     KCLA01003087.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-1631"
BASE COUNT          226 a          127 c          137 g          260 t
ORIGIN      
        1 agctctgaag aaaagtggtg ttttactacc aaatgatctc cttgaaaaag tggattcaat
       61 taatgaaaaa tgggagctgc ttgcggtatt tgcattttta ttactgtttg tgggttatgt
      121 gtacattttt gtgtgttgaa gtacgttgtc tgtctgattt ctaatttgag gcacaaatat
      181 ctctctcttt caattcacca tgtacatctc aaacaagcca ctcatggtat tataaaaact
      241 ccatagtatt cttctcttct gttgattttt tttttattcc ctgcttgtct cctgtctgac
      301 tttaataatt ttagttcttt aatacataaa aaatgtaagt aaaatatgcc atgtattacg
      361 ggtatgcacc aagtcaacta taatgcagta tatctgatat acactgactg tcatgcttga
      421 gtgaatgtta atagaattta ttctgaaggt acatgttaga gacatctact gtttaactat
      481 ttactatacc cttaagatga aaagtggggt tgtcactgca tatttcaggt cacactgatg
      541 gctcaaaaac aaatatgcag atgcagtgca aatctgaata cctgaagcta agaatacagc
      601 cgggctgtgc ttcatgctgc tgtattcagc tcacttttga caaaagccaa aaaagtttca
      661 tgtaattcat ttcacgctat gatgggctgg gtctcagcca aagagtgaga tacaagaatc
      721 tggcaaaaaa tgcaatatag tgattctgtt
//
LOCUS       KCLA01003088            1125 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50310upu ultra-conserved element locus uce-5019,
            sequence.
ACCESSION   KCLA01003088
VERSION     KCLA01003088.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1125)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1125)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1125
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50310upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1125
                     /note="ultra-conserved element locus uce-5019"
BASE COUNT          296 a          197 c          232 g          400 t
ORIGIN      
        1 tatttgtaaa atgtactttg agtctcttct tgagtttttt tttagtctac tctaataaaa
       61 ggtggtacat acggtataaa cccaaccagc aacgttttgc tttcattatc cttcatagat
      121 gtttagcaaa acagggcctg gtgttttaaa ttacttctgc tttactttaa aataggaact
      181 taggcttgaa tagcctattg ttctgttagc tactacaatg acttcaaacc acacagtgtt
      241 actgtatgca gtgtattttg ggatcatata aaatatttgt ttctccccaa gctccgaacc
      301 tctaaacttc atatctcgat aaggagtttc taacccttgg aaatactgct ttacaaattc
      361 atctaatgac ccaaatacag cttgtttgtt gtgtagcagt tgtaataaaa taacgtactg
      421 tatgtgtatt gtcattaatg atatgctcat tttgataatg gagctgcagt ctcttagtat
      481 gtagtccttg gggagatgct gcattttttt aactaagtat tgttctggct cctttccttg
      541 attggcccag aaatagcaat cagctgggga gcaggatgac atgcctctta gcgatccctt
      601 ttatctttga gatgagtatc aacattgtat gcttcctaat ggaagtgtaa tttaatgaaa
      661 tctattgggt aaacatactt cagatgttca aaggaggtga caaaattttt gctggcagcc
      721 aggacctggc tggtttccag cttgccttta gctgctatgc atatagcatt gagagaggca
      781 cttaaaatag gaacacaaag tattgtttct attgtgtttt gggttgtaga tttatttccc
      841 ccatcccttt tattttcatt aattttattt ttgtggtatt tgcactagtg ccttctgact
      901 tctaggcttt cctagtaaaa tgctatgtga ggtcagattt cccctctccc ctcaaagtgt
      961 gtttaacagt gttaaactca agggggattg ttggcacaaa gcatgctgca tattggggaa
     1021 agggtgcatg gggggtgagt aattgagccg ggtgttggtc agcggctctg taaataagtt
     1081 cctctgtaga ctgataaagt gaagcatcct gttttaaaga ttgtg
//
LOCUS       KCLA01003089             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50325upu ultra-conserved element locus uce-2773,
            sequence.
ACCESSION   KCLA01003089
VERSION     KCLA01003089.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50325upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-2773"
BASE COUNT          247 a          136 c          194 g          290 t
ORIGIN      
        1 ttttgagtag gacagtagtt ttttcccagc aatgagatga ataccatgtt agcagatggc
       61 tcttgctttg tgttactggt gatgcgtgtg gcctgaactg gaattttttc cagttgtctt
      121 ttcatgccgc tgtatttgat tccatagcga gagtcgctaa gaatatgatt aaccctatgg
      181 gtcatctcat aatgtaatta ttaatgattg attctgctta tcctgaaaat caatacgaga
      241 agcaaaatgc tttggcatat atttggggtt gatttctaac attcagtaaa catgatcctg
      301 tgacaagagc ggtattggtt tatgactggg aacacgttgg atgactctga agtgtgtaat
      361 tagttttata taatgatggc gatacgtggt ttttttcaca tgacttatga taatatggcc
      421 aatagtgtta acatctcctg ccactaatag ttagggtggg gatgtgtagt aattgatctt
      481 cctgggagtg ctgtaatgta aaaacaattc aggctgtttg aagtatattt tacaagtgtg
      541 cattgggcct ttgggatgtt acactgaaaa acccaattgt acagttacca tgggaaccca
      601 attagaatag attgctggag cactctttca tcttgaccaa aaatctaatg tactttaaat
      661 gttttcgtat ggaattttat tcataaaccc gctcggtata agagctgctt tgaaatttta
      721 gtcctgaaac cagagactgt taatgttctg agcacttgtc tttccaggag agtcatcttt
      781 agggtttaaa agttgatgaa ctgagaaaaa gactttaaga atccaggagt tgtcacggta
      841 gagctgccat cacatgagag acaggaa
//
LOCUS       KCLA01003090             454 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50341upu ultra-conserved element locus uce-4602,
            sequence.
ACCESSION   KCLA01003090
VERSION     KCLA01003090.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 454)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..454
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50341upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>454
                     /note="ultra-conserved element locus uce-4602"
BASE COUNT          123 a           97 c          112 g          122 t
ORIGIN      
        1 gtttgggaaa taatttttcc cagccctttg tctgtgaaga atgaggacag tgaggggatg
       61 catgcgccgt gggtgaatgc ctcagcccca ttgttcccag cattcccatt gagcttatga
      121 accccacata aaagacttac ctttcaccag tatgattaag aaaaggccag tgtagctttc
      181 ccgcttactg gagcatgaag cgtgtttaat ttaataatgc tgataaatct taaagccagg
      241 agcatttggc taacacatga cccacttttt caatcaattg gaaacattta cataacagcc
      301 tgatgcaggg ttcctcctgt gagggatgtg gatcagggca gtcccgtgat aagcactgct
      361 gctgtcgggt atatggagaa agaaaaacag tgaatttgac cagttcttag tgggaaagtc
      421 gtgatccgtc tcattgggac ccgctgctgc aagg
//
LOCUS       KCLA01003091            1077 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50357upu ultra-conserved element locus uce-3262,
            sequence.
ACCESSION   KCLA01003091
VERSION     KCLA01003091.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1077)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1077
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50357upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1077
                     /note="ultra-conserved element locus uce-3262"
BASE COUNT          347 a          233 c          179 g          318 t
ORIGIN      
        1 gcaatacttc tttcccttcc ccaaaccgtc ccctcttatt gtttcataca aaacaaccat
       61 ggccagcaga aatcgaacat ttccaagtaa tgtgaagtat tacattgctc ggagtaaaca
      121 agggataaaa cacttttata cttctcctta aacttatttg ctttttgaaa atatttatgc
      181 agcataggag acacaaggtt attaagaaat acagccagtt cctctccttt aattgaaaca
      241 tttatgcttt ctgttctgct agcaaaaacc aatgagcggt aataatgcaa gataaatata
      301 caaggaactt atagatatga ttgtaaaaca acatcatctt aatgttttca tttaattacc
      361 ctgaaatgta ttctatttaa tattcattac tcaaaagcca atttaaaaga gaaagaggtg
      421 aagggactta ttcagaaaga cggactgtca ttcactgcaa tagttatcta atatacagaa
      481 gttaataaag cagattaatc tacaagtccc tttaagccat cactgagttt agaacaactg
      541 cctctttgac ctctaaccct cccgctgtgc accagtagca ggtgccagct gcactaaaat
      601 tatggccgat gtgttttaag gcaaagtctt ttcttacttt gcttctgacc agcagctgac
      661 cctgtaggaa cgattgtttc atgtgctggc ctaaaggcta cataaaccag taactgctaa
      721 acaaaagcat acatacacca gctgcctagc ccgagggggc acatccacca ctgacacctc
      781 cagcagtttg tgccgtgagc ctgagtgtcg ctttttgttc ccagccatga attctgcaca
      841 atacttgcta cttcatggaa ctaaacttct ctctgtcccc aaaagtgttt gtgtgagcta
      901 tagcacagct tggatgatta agaggaggtt cccaatttga tttagtgcca ttattaagag
      961 cgtgaaatct tcagatacat cactaatgat gatgtatttt aacattaaaa gtctcacaat
     1021 taaattactc tattcacatg acagcgaatc acaacaaggc tttcaacaaa gcagaat
//
LOCUS       KCLA01003092             568 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50373upu ultra-conserved element locus uce-6557,
            sequence.
ACCESSION   KCLA01003092
VERSION     KCLA01003092.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 568)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..568
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50373upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>568
                     /note="ultra-conserved element locus uce-6557"
BASE COUNT          174 a          144 c          101 g          149 t
ORIGIN      
        1 catctaacat gtagatcatg ccactcagca cttcacccaa gttctcctgg ttagacccat
       61 caagtccatc aagagactgc actcaaactg ggcattttag tgctctgatc tgttgctaca
      121 gatctcttcc acccttcaaa atcaaccact tgaaaagctg atgtagccct gttacactaa
      181 ttaaactttg ttttgcatca gagtcctgca tttgcagtgt gtgtacagta tgtaaattat
      241 acaaattaca agaaaagttg attagcgtaa ttcaaatctc agcgcagtta ctaaaattaa
      301 cagcgaatac aaattacaca gaagcacttc agctcggctg aggagcccta cacacagagc
      361 aggctaccaa aatcactcaa gtggccaccc aaacaagcaa aatcaagcag tgagaatact
      421 gcagatgacc tttctcaggg aaatgatgtc ccgaaaaagt aactctcatc cagccttaat
      481 aattcaacgc agctatctgt ctgggttacg tgtttcagcg gtgtctgcag tgctgtttcc
      541 agctgagaca gccctactct ttccactc
//
LOCUS       KCLA01003093             311 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50387upu ultra-conserved element locus uce-3194,
            sequence.
ACCESSION   KCLA01003093
VERSION     KCLA01003093.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 311)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..311
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50387upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>311
                     /note="ultra-conserved element locus uce-3194"
BASE COUNT           91 a           48 c           59 g          113 t
ORIGIN      
        1 agctctctga aattaaaaga cgttataaca gttgattggg gacagttaat cagtgttaac
       61 cctgagaagc tcttgggctt tatggattca agcattatat gtggttgcac tgctcctgca
      121 aaaggttaag tattaatgga aaatgttcac agctctttta ctcaaagaaa acatgttact
      181 tgtaagtttt cttttgattt tacttttaca gttacattga atgtcttcat tcatttagcc
      241 atccataaag caaatattgt tgcacatgca gtggataata agtcttttta ggactacttg
      301 tgtggtatgt c
//
LOCUS       KCLA01003094             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50403upu ultra-conserved element locus uce-5494,
            sequence.
ACCESSION   KCLA01003094
VERSION     KCLA01003094.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50403upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-5494"
BASE COUNT          230 a          183 c          170 g          190 t
ORIGIN      
        1 caagcagatg cgctcccttc gtcgcctcct ccttcccctc cccgaaacaa actacctatt
       61 taacgcgagc tgactaacta agcgtctccc acccaattat caaagccctg tcttctgtca
      121 tcttggtgac accacacaga tattgtcgag gaagagtaaa ctgaggctgg cactcggcgg
      181 cagctcgcga gagatgagca gtccaacagc catattcaat acaggagagg agcaggattc
      241 cttcagaaaa tgtattgctg ttgtggcaac gtgctgctgc cgctgaaggg actgatttgt
      301 tatttagcgt gtagtcttgg actgtctgtc attctgggtg ctaatgctct gctaaaataa
      361 ctcattggga gctgtcagtg ggatgtttac ataggccccc aatcttttct tcatacaagg
      421 aaatttttta ctggaattca tcttcttttg atctcacatt caaagcaaca gcagcttgat
      481 agacgtgcaa gtctgaaagc aaatccagac gctgaagata aaccgccaga gtatgacagg
      541 caggagcatc taaagcttat aaaaatgaag agaacagcat gtcgtctgag tattacaata
      601 gcagaaatca agagacatat taggtggaac tgatcagcca caaaaacagt tcaaaaggca
      661 gatcacagaa acagaagact aagctaggga acatattgga aagatctgct ttacagaggc
      721 atcacctcct ttcccagtac cacagcgttt ccgctccggc atgtaaactt gag
//
LOCUS       KCLA01003095             780 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50433upu ultra-conserved element locus uce-3492,
            sequence.
ACCESSION   KCLA01003095
VERSION     KCLA01003095.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 780)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..780
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50433upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>780
                     /note="ultra-conserved element locus uce-3492"
BASE COUNT          268 a          133 c          141 g          238 t
ORIGIN      
        1 aagcacactg tatttaacca gaagcagaat gttgcataaa aatagtctca ggattcatga
       61 gatgttgtag tggggcgaaa tatcttacta tcctgcttca gacaacagca gtcctcattc
      121 ccacataagt caagctatac ttgttattat tagaagaaaa gaataagttg ttttacatac
      181 tgtgttttac tacttgcaaa attactcatg ctctcagaat aaactacaga gtgcaaatgc
      241 cagggtgacc cccccccgcc ccattgttga agacataggg ttaaggtaga gaaacaaatg
      301 tagttgcttt gatttatcac ttgtgacatt agcatgtact ataccgttct cctggaaaca
      361 aaatggttgc acctgaggac agtgatataa acactacttt gattatttga aacaaaccat
      421 taggctttga tgaaagaacc attactttag tagaccttgt acagagagcg tgcttggaga
      481 taatggatga gcagcctaca aattgcttgc ttagaattta aagaagtcac atgtttgttt
      541 gaactctatg gcataaacag atatctaaca tgaacaagac aaactaatgg tatacttaca
      601 atgtagtgga agaacacttg caaactttgc ttgcaatact ataaatactt cattttagag
      661 tgcacagtat aaaaaataat tagctgtgta gccataatgt atacagttat tgtctattga
      721 tttggatcca atgaattggc acacttaaaa cagtaagttt tgttatattt ttaactaaaa
//
LOCUS       KCLA01003096             850 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50449upu ultra-conserved element locus uce-5346,
            sequence.
ACCESSION   KCLA01003096
VERSION     KCLA01003096.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 850)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..850
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50449upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>850
                     /note="ultra-conserved element locus uce-5346"
BASE COUNT          175 a          218 c          266 g          191 t
ORIGIN      
        1 cagctattgg aaccgagggg gcagtggctg gtgtccaggg cagctgaagc agtactgtgc
       61 tccggcaggg acttgacagc ccctggggga ctccgtgtgc atctgccagc tcccagcctc
      121 gatgcccatc ttgggtgctc gatgccagcc aggacccact aaatcctgag gcctctgggg
      181 ttactgagcc ctgtcacact cccggatcac ctgcagctct ttgcttaggg catgtctgca
      241 gtaggcacag ctcctcagag cttaaagctc cttctcaagg gttgctggcg caggaggtac
      301 cacggccatc ccagctccat gccttcctgt aaagcctggc tggaggctgg caatcttggc
      361 tcagcccatt tgcccctctg aggagtagag attataatgg tgtgtcatat attttctaat
      421 ttcctaaagg taactgttca gtccccacct aattttacac agcatgtgag ggagcagagc
      481 ctggtgacgg atcagctcag ccggcggctc gtccgtacct accagctgta cagccggacc
      541 agtgggaaac atgtgcagat cttggacaac aagaaaatca atgccatggc agaggacggg
      601 gacgtgcacg gtaaggatgg gggggtgatt gtggccgagg agggatctgg ggaggtgttg
      661 gcagcccggt gcggcgattg atggtttccg tcctgtttgt tagccagaaa tcgttaaagg
      721 gcttgagaag ggagaacata ggggtcagcc atcagcggct gagtgactca aggtgagggc
      781 atgttcctcg tgccaaggga ggggacgagt gcttgcaaga tgggctctgc tcctcgtgtt
      841 ttcatccctg
//
LOCUS       KCLA01003097             467 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50464upu ultra-conserved element locus uce-309,
            sequence.
ACCESSION   KCLA01003097
VERSION     KCLA01003097.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 467)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..467
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50464upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>467
                     /note="ultra-conserved element locus uce-309"
BASE COUNT          152 a           91 c           76 g          148 t
ORIGIN      
        1 ttaaaagtca ccttcagaaa acactgctgt accttgctta taatcaaatg acaccttata
       61 accacctaac catttttaat atcccctaga ctctcttgta ttatgccaag gctcagacac
      121 tgtctagcta gtcaaggaaa agagtatacc atcatattta aaagcagtta ttgggacagg
      181 ttttacaggc agtgggctaa gacaattcag aaacaattgc ttatgtgata gtttgaggat
      241 ttgtccctgt caaacagtta atattgcttt aatacatgaa gtaggctcta taagacagca
      301 ataatgaaaa atgtcaggaa agacaatatc aattgttatt caacatccac atcaaagatt
      361 acttttttgt cagtagcttt cagaaaatgt attttccatc agatctgatt gcgttcctct
      421 ttgaagtgct ccatcctccc agtagattta atgtgacatc taggctt
//
LOCUS       KCLA01003098             458 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50479upu ultra-conserved element locus uce-6353,
            sequence.
ACCESSION   KCLA01003098
VERSION     KCLA01003098.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 458)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..458
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50479upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>458
                     /note="ultra-conserved element locus uce-6353"
BASE COUNT          125 a           85 c          131 g          117 t
ORIGIN      
        1 gtggggagag gaggagagaa gagagggggg catgcatata aatcattatt ggcgaacatc
       61 tcagctcttg agccaggctg tcgcttggcg ctgctcgcgg tgcagcccag acataaatca
      121 taattcccct acaatagatc ctttcgcagc cgccatcagg aaaagtgtgt tggttttatc
      181 gattctttga caccggggcc ctggcaacgg ccgctctgaa tcattatgaa atgaaactga
      241 ttaggaattc atggaatact aaataaactt tacgagcccg gtgtaagttt ggtgatgcac
      301 ggggagtgga aaatgaaaac taatgatata aaaattacac agcgtgctga gtattatgag
      361 actgctattg atttgtttcc aactgtacat caaaatcgaa gggtgctggg ggtgcttggc
      421 tgcaaggctg atgctcggga gctttagagg gtggtggt
//
LOCUS       KCLA01003099             631 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50495upu ultra-conserved element locus uce-2937,
            sequence.
ACCESSION   KCLA01003099
VERSION     KCLA01003099.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 631)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..631
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50495upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>631
                     /note="ultra-conserved element locus uce-2937"
BASE COUNT          201 a          135 c          104 g          191 t
ORIGIN      
        1 cctacatttc attactgctc ttcttccttc taagtggaga ctaatgtaaa gacaatcact
       61 aaagaagcag caatcataat accctatact aaattcagtc ttagggctat ccacaggaga
      121 aatacatgac agatccattg ttctgtatta gcaggatatt gtcccagtat atgaacacat
      181 gcaaactttg aaggctttga atatttaagg caagacacta gtggctcatc ccagtgggaa
      241 ccacagaaaa ggggaacctg attaaattta atgtcattgt cacttttttt tccattgcta
      301 agaattatat aggtagccat agctaccaca ctgttcagac accatgacca caatattctc
      361 cctcagaggt tggcgtcaag gactgaatca ttcactccaa gaatgtgatt cattactaga
      421 tatggttctt gcccattaaa agatttgtca gtatataaaa tacatgtaca tattcgagta
      481 gcttatttta aaataactgt tacgccctca ctaacctcaa aagatgccga attttattag
      541 tatgatttaa ctttggagca catctgcccc tgccccactc agaaagctct agcttaacta
      601 agcagctttt tactgtttgc tgtgcaacga a
//
LOCUS       KCLA01003100             577 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50510upu ultra-conserved element locus uce-4070,
            sequence.
ACCESSION   KCLA01003100
VERSION     KCLA01003100.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 577)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..577
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50510upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>577
                     /note="ultra-conserved element locus uce-4070"
BASE COUNT          175 a          133 c          114 g          155 t
ORIGIN      
        1 tgagctcact gtgaattaaa gaaatcctac aagatgtgaa ggtattttta agagcattta
       61 aatataggac tcttttcatc tagctatcac tgcagtaata taaatgaagc aaattaattt
      121 taatgctcca aggtactgat tctgtgtcac tgtcactgac aggatccagc cagactttat
      181 gagatggcat ttgactttat ggaagcgagc actatgcacg catttacaat tttacaggga
      241 ctttaagctg tcacgctgaa aaatgtttat aaaacattaa tcaaaaaatg cctcttcaat
      301 acaatgcatt gtctgaaggc tgtgggcagg cacacagcgc aaatggattc cttttccgac
      361 aaaagtcagc tctacccaaa gcctttcccc actgctctac gcgcacacgg cgcggggaga
      421 taaagagcac tctcgcagcg cattactacc tgctgcaaac acttgggacg tcgctaatgt
      481 acggcgtgcc atatttccgt gtcacacatg acacgtttgt ctaacagagc ccaacaggct
      541 ttgacattgc agcagattcc atacaagagc tttcaac
//
LOCUS       KCLA01003101             310 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50525upu ultra-conserved element locus uce-5918,
            sequence.
ACCESSION   KCLA01003101
VERSION     KCLA01003101.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 310)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 310)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..310
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50525upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>310
                     /note="ultra-conserved element locus uce-5918"
BASE COUNT           91 a           79 c           54 g           86 t
ORIGIN      
        1 aagcccataa aatcagatgc attgccctct gtcttctcta agctacaaac taaaactagt
       61 tttcatcaaa ttgcactgac cctattaact taattttcca tgagctgacc ttttatgact
      121 aacaatggga aagccaaact gtgcaaatac ccatgaagac ggtgaaatga cttattttaa
      181 tgagaagact aaaatatctt ccctgcatta gcatctgctt attgtcactg ctccttaacc
      241 cctcggtact ggcagtcgcc gcacgtccca ctgccaggag tagacgtatg ccaggagagc
      301 cttactgctg
//
LOCUS       KCLA01003102            1036 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50541upu ultra-conserved element locus uce-4068,
            sequence.
ACCESSION   KCLA01003102
VERSION     KCLA01003102.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1036)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1036
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50541upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1036
                     /note="ultra-conserved element locus uce-4068"
BASE COUNT          305 a          182 c          207 g          342 t
ORIGIN      
        1 tttttctgta agttttgtag agaccgaaca aggaaattac aaatcataca atgtgattct
       61 tctgtattac tctcttttaa ggtctctttc ccagtgtcag gctgtgcttt ttacagagct
      121 taacacagat gtgtgtttgt ccaacaaact tttctaatgt gtgtttagca tgtaagttga
      181 tgaaatgggt aagagttcgg ggtaatagag agcaatgatc atcttccgac agtggagcag
      241 tgagattata tccaaaacct gccagtctac tatcgtagaa tttgttaatt gtgccagtcc
      301 ttgtgaatat agatgttttc ctgaactcac aagcaataca gtaagccagt aaatctaagt
      361 ttgacctgct tgttattatt gtgagccccg ggtatgtcaa aggctttaca caaagtcagg
      421 attattaatc aaacctgact ccctcttatt gattagatct cagatggttg ggttacatgc
      481 caccctgctt atatattgct atttaatttg cagccaccct gcgtgcactc tatctaagtg
      541 acaacgattt tgaaatcctg ccgccagata ttgggaagct cacaaagttg cagatagtaa
      601 gtaatttatc taaattcttg gaaaatcaat tcacttttgc tatgcttgta ggaatagaat
      661 ctagtcaatt tgaggagtag tagggtatgt ttgcaggaat agactgctac acctggaacc
      721 atttcttgtt taccagcaga cacttgtaaa taaattggaa gaattgtttc ggagaagggt
      781 ggggatagag agaggagagt tctgttttaa gcttctttat ggtaactgaa aattgttctg
      841 actactttat attcactctt agctgagtct tagagacaat gacctgatat cactgcctaa
      901 agaaattggt gaactaactc agcttaagga acttcatatc cagggaaatc gtcttactgt
      961 gctgccccca gaactaggta agattatgga taataatata attattttaa caataatgat
     1021 acactttctc tccttt
//
LOCUS       KCLA01003103             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50557upu ultra-conserved element locus uce-7832,
            sequence.
ACCESSION   KCLA01003103
VERSION     KCLA01003103.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50557upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-7832"
BASE COUNT          243 a          186 c          166 g          265 t
ORIGIN      
        1 ttgtgtttca agatctgaga gcaaactttt caaacgtatc ttgtacagat ccaggaactt
       61 tgttctaagg atcgaatctc tttccacttt tgtatgctat cctcagtcag aaggtttcta
      121 tccaggcttt attcttcatt aaaacatgga gaaagaaata ttaatctctc tatatttgtc
      181 tgcttaaaac tcctgcttgt gaggatttaa aagaattaac acgtcacctg gacacagatt
      241 taactttttg ataaacagca aactcatcta ctgctgtgct tgctattttt aacccacctt
      301 gtgagtatgc tttttttatt gctttataca gcatatctga ttctctctaa agcacaaact
      361 aaaaaatcta tccggctgtc atttgctgca tagtgccatc tatcatcatg cagcttggca
      421 gctgtagtgc atgagaggga gggggagctg aagcaggagg cacagtcaag gactttcaca
      481 tgtaacacgg aagaaaaatc cttgtcacaa ttatttatgg ctcttgccgg ggcacataat
      541 aggacacata aaacctctgt ttcagtttca agcaccctca catccacgct cccttgtcga
      601 agttggtcgc aggcagtttt gctttacaca tacaatttcc tgaacaatgc cgagcacttg
      661 tgaagtgaca gtgacaaata ctagagatgc tgtctgcagc tctgcaggct gttacaggag
      721 cagtagtgtc aataatcaag gaaggctgcc aatgatacca aaatgccagt gcgattttcc
      781 actcgttcaa cgacctatct gcaatgcttt tattttgaag ttgcaggaaa cttcttgcat
      841 ccctgtagtt caagctgtaa
//
LOCUS       KCLA01003104             902 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50573upu ultra-conserved element locus uce-333,
            sequence.
ACCESSION   KCLA01003104
VERSION     KCLA01003104.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 902)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..902
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50573upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>902
                     /note="ultra-conserved element locus uce-333"
BASE COUNT          275 a          154 c          154 g          319 t
ORIGIN      
        1 acctcagtgt cttctacact taatcaggct gtgcaatata ttttaaaagt agacatcata
       61 ctcgagtttt aggtgtattt taataaaagc taaaccttgt gaagttttaa actggaaaat
      121 aagttgactt atttgctaat ccttctggat gttctagaag cagaattacc ttttactgat
      181 acttttattt aggaatgaaa agttaagctg tgcattacaa ctgtatttct ggaagagaaa
      241 aaaaaatcca gcaaattgat atataactct gcagaagtct accaattgct ttttaattgg
      301 tgttatagac ttcactctga agctaggatg ttttattctc gtatgtgtga atgtgttata
      361 aagtttttct aattgatttg cgttgcccat tccatttgat gtatcatttt tcacaatatt
      421 tcataatttg tgctcatttc taatgaacag agtcgttagg acaggcatgt ctaaatacag
      481 ctgacagcta acattaggtg ccagatgcag tttataaagc tatgtagaac tgcagagaac
      541 agtttaaata aattagcacc tgtacattag tctcacttgc tggtaattta taagcgaatc
      601 agtagagatg acatttaggt aagtcattga tcaagttaac agctgcatac ccactgccca
      661 gctgggatac ctaattaata gagattgcag tcctgaccta gtgcttctcc tcggttgagt
      721 ctgtaatcct tttattttgt gatttaactt taacttatgc ttgtagtaaa cagcccacct
      781 tcgttttcca ctgtcaactc tgtgatattc tactttaaag cccagaaacc taagtgagat
      841 taatacagga agaatgtctt aatcttcatg acctatttat atgctagcat ttttattact
      901 ca
//
LOCUS       KCLA01003105             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50588upu ultra-conserved element locus uce-4146,
            sequence.
ACCESSION   KCLA01003105
VERSION     KCLA01003105.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50588upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-4146"
BASE COUNT          312 a          175 c          177 g          308 t
ORIGIN      
        1 tttatttcag agtaaaccaa atgactttaa attcaattcc tgtgactttc tgcttaaaga
       61 ttatgtacgt agggaaggaa gaaacaaaat taggaacttg atgtaattaa ggatgtgctt
      121 acttcttgat atttttaata ggtattcttt gttttcttaa gtgcacaagc taagcgcact
      181 aatcttaaat caataacagt ttgcttcaga aaataatgca ccctgtgttc ctccaaccct
      241 tcctgagtaa ttcaactcct ggttcaaggc tttcctgagt ttcttgggtc tgtggcaaaa
      301 ggattgcatc acctgtgact attggaatga tatttgatag ggaaagaaaa gcatttgtgc
      361 ttatcagatt agaagtggca gaataatgtg ctgtcagtaa agtgtaagag gtatcatgga
      421 tgtgtcagct gttctccatg taaattaaag ctctggcaaa agtgtctgaa gcaaactctt
      481 gaaaaccaca atgtcgatca tattaaaaac agcaggagag gagaattaag aaagaaaagc
      541 atttctaatt ctctttaaaa catgctggtg ctgccaagct tttgtcataa tatagtgctc
      601 acattacaca aacagccatc atattctata gccattaata aatagttatt gtctttacat
      661 ttacagtcat gcataccaac ctcccctggg tttggttata ttaaataaaa ggtccaggca
      721 aacctactta gaattcagcc atttggtggt ttgagataaa catgtaacag ttggatcaca
      781 aagtgcatct gcagccaatt gaactactac taaattaaca gctaaccctt tcctattttg
      841 ttcttgtaaa gctgcacaga acaactgaaa accaccagtg cagttgtctt ctaggctatc
      901 aactacatat tcaggattaa ttgaggcatt ttatttccta tcagagatgg cacatttcgg
      961 tagtgtatct ca
//
LOCUS       KCLA01003106            1088 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50602upu ultra-conserved element locus uce-526,
            sequence.
ACCESSION   KCLA01003106
VERSION     KCLA01003106.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50602upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1088
                     /note="ultra-conserved element locus uce-526"
BASE COUNT          358 a          175 c          194 g          361 t
ORIGIN      
        1 atatttactt ggttattact gagagttatg agcttattgt atgactcagc aaactaatcc
       61 agattttatt tcctatgtgt gatttccaaa caagccactt cacaacaggg tatttgtgta
      121 tcagaatcac cctagtagct ctggataaaa cagtgcagtc catgctgaag cctcaacact
      181 gcatcttttt tctttttctt ttttcctccc aaatttagca cagtttagca caattgtgtg
      241 gtcccagatt gaactggtta caaaaagatg tggtttctga tatgtaaaac tgttaatgct
      301 ccagattgtt tccaaacatg atatgaagaa ccatgtattc aggcacctga tctttagaac
      361 gcagcatcgt ttgtaacaat tttaacgcta actaagtaca ctttgatgag acagcattta
      421 ataaaatgct cattaatttc atcattagca agggtatgct aagaagtaag ccagtttctt
      481 atgtcacgcc caattagcat cccatgctag taatcccatt agtattgttg aattcactaa
      541 tggaaaaact aatgggcatg ctaccagggc acattaattg ggcatgacac cagttctggt
      601 tttaattatt aaactacgat aatgaaatgt gtgtttgtaa aatattaaaa tgttgaaata
      661 ggagagaaga caataaaaaa tagtatatga aaaggttcac attagtatgt aaggatatat
      721 agctttgtat tgtgaccatg gaacagagta ctgatataca aattgcctca atacaaagag
      781 gttggctgga tgaagtagga gacacactgt aaatattaat gggaaactat tctgtaatca
      841 tgtaaatatg tacatatcct ttatattttc atacacagag tacagaatga cagtgcactg
      901 caaaatgtat attatgtttg taaatcttta tgctgactag ctatttctag ttgatggact
      961 tcactaaagg ctggatacta atttttaaca agaacttttt agtattagtt acaatagttg
     1021 atgggtttta tcaacaggtt ttcttcatat gaatatctct aaagcccttg agccaaaggt
     1081 gtattaga
//
LOCUS       KCLA01003107            1026 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50617upu ultra-conserved element locus uce-4697,
            sequence.
ACCESSION   KCLA01003107
VERSION     KCLA01003107.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1026)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1026
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50617upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1026
                     /note="ultra-conserved element locus uce-4697"
BASE COUNT          308 a          204 c          222 g          292 t
ORIGIN      
        1 cgaaaataat ccattttaaa caaatctttg gcagcaacat ggttaagcat aactatttga
       61 acaacttgca cagaagatta acattgttca gaggtttttt ggctcagaat ctgttttaac
      121 ttaataattc ttgtacttac tgtgatgtat tgatccctag tgcaatgact ggattgggca
      181 acccaggtgc aacagtaata gctgcacaga atagaaacat ttcctttaga caaactatcc
      241 caaaggggtt ataaatagga aatggacatt accatgaaaa gtaaagcttc caatgtgact
      301 gcatcttgtg tagcacactt ggacattaaa ctatgaagaa tttttttttc ctgtcaagtg
      361 ttacaaattg acgaaataag tacatcaatg ttctcagtca ttatcttact tcagtggcac
      421 tttgttttag tgacagcaaa aagggacagt ggagaccaga cagccccagt gcagtttatc
      481 aatgaaaatc taatatcgtc cataagcagg ggagtgaaaa tcaatacttc attaccaaat
      541 tgttagtgag gatgaagaag aatagtggga gtttttttgg cagtcttctc ggtctgggtt
      601 gttgtgagtt caatgtcagg atcggagtga cgcgcagggg cgggctgggt gcgggaagcc
      661 tgggctggag agctggagct aaggcattcg tcctgcaagc agaagaataa tgactattgt
      721 tagcaagttt ccaatcacaa ttccagattt taccgaagat gcacttttat caatagaaaa
      781 ttgtggaaat gggtcagctt ggctttacgt tgttcctcca caggctctca aaaagccagg
      841 acacagaaat taccatcccc ccgatttgca catccgtata tgggagtagt gggcaaaatc
      901 caaccgatgc tgcagccctc cctgctcccc tgagtgtgtt actctgcatt tctgctgctc
      961 cctcatggtg ctgacaccta gacaatataa taagcttctt tctaatacca gccaagaata
     1021 gactct
//
LOCUS       KCLA01003108             789 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50632upu ultra-conserved element locus uce-3722,
            sequence.
ACCESSION   KCLA01003108
VERSION     KCLA01003108.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 789)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..789
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50632upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>789
                     /note="ultra-conserved element locus uce-3722"
BASE COUNT          233 a          167 c          143 g          246 t
ORIGIN      
        1 ttgtttatct cagggaacac caaacccatt atagttgggc ttcattaaaa tatagaggtc
       61 tagctttatt cttccttctt aattcagatg cagcaacctt gcttgagttt tgtggagtga
      121 aggctcagga agaaaaggaa tagggatttt ttttaggaga atttcgataa caagcaacat
      181 tttctatatt atttatcttt cagagaataa caagcctgat gctgaatatg actgagggga
      241 agattttttt atcttgcccc ctataataga ttttttcttt cactcaattc tctgggcgac
      301 taacaagagt ggcagccatt ttcgcccagc tcaacatcaa accccctttc atctgctgtc
      361 taaatgcaaa caaagcaaac cttccaccag gcctttcttt ccagataaat taaaactctc
      421 atgtcctggg gcctaaatca agcctacagg ccttccctag ataaatcctt tctcaacctg
      481 aaatcttctt gctacacgtg ctccttgtaa gataattttg cagttgctaa tcaataatgc
      541 aacagtaaat tgcatttaaa taaacattag cggccctctt aatgaataaa acctcatttg
      601 caatttgtca aagtcagaaa cgctggactc ttctgatatt cattagaata ttggaaattg
      661 gagctttgac gggttttacg tatgtcgcaa aagtgatttc tgtgagtcaa ggcagcgctt
      721 tattttcccc agaacgcggg aataaagaca gggctatgtg ctgcagactc cacagacatc
      781 aactggtgc
//
LOCUS       KCLA01003109            1139 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50647upu ultra-conserved element locus uce-1814,
            sequence.
ACCESSION   KCLA01003109
VERSION     KCLA01003109.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50647upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1139
                     /note="ultra-conserved element locus uce-1814"
BASE COUNT          342 a          267 c          246 g          284 t
ORIGIN      
        1 acaaacaaaa cccagcaagg cagcctgaaa tctggctgcg cttcctggtg cccaggctgt
       61 gtacaagcag cacatctcac catgatttca aggcagcgga ggagacgcaa actagactaa
      121 atccccagga acagagtatc acagatattt ctgtgctcct ggctggagac aggctggagg
      181 cgaccggaac accctgcttc agcctgcggg agtgctcccc actccatcca gctgcccccg
      241 ggtgaaagtg gggtaccaca ccatgtatat tcagtcagac tgccagtgtg ctcacccaca
      301 ttctccgtct cggtgcaatg ctccatgaca acaaggtgag acggcagagg ttacccgaac
      361 agctgcttcc taagccagaa attccaggca ttgaaaacca tctgtctata cattcacaaa
      421 tgtatataag ggcaatctat caggctgcag cactgcagct gccactccat caggcctgct
      481 tcctttctcc aggctgaaca ataagagcta gttcttcact ttgtgtcaca cagaatggct
      541 gatttgatta agtccccaac tctcattatg ctaggtaggg gtgtagaatt tcaatgataa
      601 tccataatgc atgaccagtt tgtcaccatg gcaacataaa ttcaaggtta ctagctcaga
      661 cacataattg ggtgtgcatt gagtgctgaa gaagggctgt taaaattctt gtcatagaag
      721 agtagcatcc atcatactgt ctgaaattgc aatgtactca taatcagaaa gaaaaatcct
      781 tggagaaata tgttaataaa ataacgatta tatctaatat aattgtttaa gtttaaaaaa
      841 acaaagcggt taaagtgttt gagttaataa gaatggaaaa ggcaactcat taactgcaga
      901 agactttagc ccaacattcc ccacccccta atatttgcat tgtaagatgg acccaaagca
      961 gctcagctct gaacctgact gattagctca ggatctaatc cgtatgatac agtaaaaggt
     1021 gacgcttcac acgcagccgg cacagccctg taggcattgt ttgtccagtt tgagcttttg
     1081 ggggtaaata ttatcttcca aatgagctgc actaaggata agaggacttt tgcatgctg
//
LOCUS       KCLA01003110             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50662upu ultra-conserved element locus uce-2055,
            sequence.
ACCESSION   KCLA01003110
VERSION     KCLA01003110.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50662upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-2055"
BASE COUNT          121 a           57 c           74 g           92 t
ORIGIN      
        1 aatagatgga aatacaacca aagctttgaa atgcacaagc attggctcac aagacagctg
       61 tgcagttgac aagtaacatg agccttatgt gagaagaagg ggaaatcgta agatttgcat
      121 ataattattg agatcatgca aatgtcagtt atgaggatgg aaaaaaacac aggcatctca
      181 ctgttaaatc ctgacagttg gcatcactga agaactcaaa tacacttgag cactggttgg
      241 cagagggtca ttaaaacaga atttgcagag acattagctc cctcattttt ctttgagtga
      301 cgttttacta ttaatagttt gcagaggctt tgcagaaaac atat
//
LOCUS       KCLA01003111             432 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50677upu ultra-conserved element locus uce-5029,
            sequence.
ACCESSION   KCLA01003111
VERSION     KCLA01003111.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 432)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 432)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..432
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50677upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>432
                     /note="ultra-conserved element locus uce-5029"
BASE COUNT          122 a           77 c           73 g          160 t
ORIGIN      
        1 ttgcttttcc aagttaagat actttgaaat gttccctttt ctaagctcat tatatagttg
       61 gaaagtagga tctacacaaa ggtgttgaag aactaagtgc tcagatgtgt tgtacctttg
      121 attgactggg gaaatgactt tcagttgaca tctgagccaa caagttagct gaaataaaat
      181 tttgcttaat acctttgcat caataatcta ggcacagcat cattgattga gaaagtttga
      241 tcaatagagt attactgact gcctaactgt aactttgcca gacttttttg ttaattctgc
      301 tgatgacctt cgtaccactg cttttcaggt tcacggtttt tttcctttga aattcaattt
      361 gctccatttg ctattattta aggaatttac acatcccatt gatttcactc tacctgatac
      421 aatatgagtt ta
//
LOCUS       KCLA01003112             595 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50693upu ultra-conserved element locus uce-4457,
            sequence.
ACCESSION   KCLA01003112
VERSION     KCLA01003112.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 595)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..595
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50693upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>595
                     /note="ultra-conserved element locus uce-4457"
BASE COUNT          173 a          115 c          112 g          195 t
ORIGIN      
        1 attctgatag ctgtcactgc tctggtataa cctcagctgt ctggataaga gctaacgaaa
       61 ttttttggtg tgtctttcag agaatacatt tgcatttgcc ataattagtg gtaggcagat
      121 ccagctccat ccagggggaa tctcaagaca actgctttgt cgactattag tgcctaattt
      181 ctgaatgtca aaccctgcac atcttaattt ctagagaata agctcaattg aacttgctcc
      241 ccagttatgc aaaaactgct cagataaaac caagtggaca ccaatgtaat gaatgtggtt
      301 attaaattgt ttcaattgaa agaaccctat tcttacacca tcataatggg aacaatttat
      361 ccccactgat cggcctgtct cttttttctg agctctcttt gatcttgaag catattgcag
      421 tggtgtgtcc tattgaaaag caaaactggg gcaattttaa tgcttttgta ccttaccagt
      481 gctctatttt ttcgctgttt aaaaatagct gttaattata agtgcagttt aaatgtctca
      541 agtgacccag aaatgcaggt tggaatgaga cagattgtgt gtctcatata aaaca
//
LOCUS       KCLA01003113             300 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50709upu ultra-conserved element locus uce-3702,
            sequence.
ACCESSION   KCLA01003113
VERSION     KCLA01003113.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 300)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..300
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50709upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>300
                     /note="ultra-conserved element locus uce-3702"
BASE COUNT           78 a           59 c           63 g          100 t
ORIGIN      
        1 cattgaagtc cccttgattt actgtacgca atatgttaca gcttccttat ttgctccttt
       61 gggacagtta ctgacagtaa atctctatta aaatattctt ccatatggtt gcatgaaaat
      121 tttattgcag tgagcctgag gctgaaggtc acagctgagt agctgcagtt aagtattgca
      181 gtctatggac tctgaggtac atctgttctg ggagctggag caaaattaga attttactgt
      241 caatagcact tctccacaac tagttctatt tgtttactgg cgcaggtctg gctcaaagca
//
LOCUS       KCLA01003114             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50724upu ultra-conserved element locus uce-406,
            sequence.
ACCESSION   KCLA01003114
VERSION     KCLA01003114.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50724upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-406"
BASE COUNT          202 a          211 c          199 g          169 t
ORIGIN      
        1 aaggagctgt gaagggcagt caggtctcgt ctcagcttct tcgggctcgg agacgctgaa
       61 gcagccaaag ccccccagac aggtaaagcc tttggagagg ctgcagggca tcgccctggg
      121 gctggcagga ggggccgtgc ggccgggaaa ggcagaagtt tttaaagaaa gagaaggctc
      181 cattattctc ccattaaatt ctccccctct cccttccctc tgtcagtctt cgggtcgctc
      241 actgacttcc cccagcctct ccgaagacag atcgttccct taatcactct ggaaaagaac
      301 cccaagccga tataatatta taattaatta attcactaaa aaggtattaa atttctcttc
      361 ccccctgtgg atattatctg aattcattga cctttagaaa aatcaccctc taattgtaac
      421 caggttcaag agcatttcca gcctgtccct gttacattaa taaaagcttc caggactcca
      481 cggcgctgct taaatattgt ataaattcca ctgcccctcg aaaaggagcg ggaggagggc
      541 tggaaatgga aaccgtgggc tgattgaacc cgctctggac tggggaagag gtaaaagggc
      601 tcgagacgga caaaccctca gccagaccct gaagggactc gggatgagga atcccgaggt
      661 ctctgtggcc aacagcaccc ggccaagagc acagtcccca gaccaaggat gctatcgcct
      721 agctctttgg ggtgcagctg ggagggagaa ggggtcccgc acacccacag tgaccgcttt
      781 g
//
LOCUS       KCLA01003115             865 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50740upu ultra-conserved element locus uce-2256,
            sequence.
ACCESSION   KCLA01003115
VERSION     KCLA01003115.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 865)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..865
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50740upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>865
                     /note="ultra-conserved element locus uce-2256"
BASE COUNT          266 a          172 c          168 g          259 t
ORIGIN      
        1 tttttcaggg cacttaattc ctttctcagg tgtttggcat ggtgaagcaa cacagggtta
       61 ctgctaagaa agcggtaaat ctctgaagat ttgagtaaat gctctgacac actgaactgt
      121 gctaatttcc agatgacagt ctgctccatc atgtaaaagt gagatggtac gaagcatagc
      181 ttcaactcat tttaaggccc tgtttgaaga tcctattttt gaaactcttg ctgtaaattt
      241 cactttccca actgcttaac atgcgtgttg gagcctccaa cactgagcca cgcagattta
      301 tctttgtctt ttgtgttaat tattagctgc tgcagagctg ctctgtgggt gaacgcacac
      361 agaaacaaag gtgtcaaggt tgtaaaacct tttatctcta tcagggcacg ttatttgata
      421 aggtgctaag ctaatagcaa cgcatgtcaa attgtgttta gacagatcag tgtgctggga
      481 actggaggtt atatttatct ctctaagcca ccacctgaaa gagaatttca tacgcctatc
      541 atgacactat gtaaactgta aaccacctct gagcagttac tccacaaatg gctccaagat
      601 aatgcacctc tgccttgtcc attgtgttgt gcatatcctt ttgaacttga tcattcatgt
      661 tctcaaaaca gcagtgaaaa taagaaacaa tatgggacag aacaatgcag tactgtgtca
      721 acattacata agctgcactt taaaaagcat ttttaaactt tttaaagcac ccaagtggca
      781 ataagatcta gacatttgtc cctgagaaat agacaagggt gtgcattaag ttgtccaaat
      841 ctgataaaag aaacaatttg aaaaa
//
LOCUS       KCLA01003116             739 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50754upu ultra-conserved element locus uce-7083,
            sequence.
ACCESSION   KCLA01003116
VERSION     KCLA01003116.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 739)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..739
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50754upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>739
                     /note="ultra-conserved element locus uce-7083"
BASE COUNT          191 a          157 c          181 g          210 t
ORIGIN      
        1 ttttttcagt gacaagctca caaggataca ggtcaaataa ttagtttcag ataccctcag
       61 cagaagcctg ggtgttgagg atggaggtca gagagacctc caggagcacc aagctgtagt
      121 acttgccagt agcaggctgc atgcgagtcc gtttgattgt gcaaactttg tgctaaagtg
      181 accctggtgc caaagttgtg tttctttgtt ttcagtccca tttggtgaag tgccaagctg
      241 catgcactgc tgtcgttgtc agtgtcgtat aataccaaca acttttggaa agcactaatg
      301 aacaagtgca atttcttttc tctattgttg ggttttttgt aaagttgctc aaatgctctc
      361 aggtatggcg gccctgaatg gaggacttgg cgcaacaggc ttgacgaacg gtacagccgg
      421 cacaatggat gcgctcaccc aggcctactc aggaatccag cagtatgctg ctgccgcact
      481 gcccaccttg tacagccaga gcttgttgca gcagcaaagt gctgcaggca gccaaaagga
      541 aggtaagtgt ccagcagagt aagtcctgtg ccaactgaac tgtctatagc caaacaaaag
      601 tagtttcttc atggaggttc aatgagtgac ctcaagtagc ctagtctttg attttggatt
      661 tttttattag cattgttact ttcattagac tccatctctg gacatgttta aaagtaaata
      721 tggagcttat ggacatgat
//
LOCUS       KCLA01003117             461 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50769upu ultra-conserved element locus uce-7350,
            sequence.
ACCESSION   KCLA01003117
VERSION     KCLA01003117.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 461)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..461
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50769upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>461
                     /note="ultra-conserved element locus uce-7350"
BASE COUNT          151 a           94 c           74 g          142 t
ORIGIN      
        1 gggctgactt atgaacatta aaatgaaacc tgatatttgt cgagctttaa aggcaagccg
       61 ttttaaaagc acccaggtca gaacttaaaa aatacataag aaatgttcat acctggttcg
      121 tttatgtcca ataataaaac aaaatcctct ttaaaagtct tcagtaccta gtaacagccc
      181 catgaagaat aagggggctg gcaggggaag ttgtcagaaa atttaatttc ctttcattag
      241 ctagtctgct ccacaaatcg gtgcttgtta agttcaaagc agtcctgaaa gctacatcag
      301 ttttaagtct ttttactcca gtcacatctg ttaatgagat tttttcaaat aacaattgtt
      361 tttaagttaa gagataaatc tagccacccc ctaaaaaata acccagggtt tactgtttta
      421 ttacacctta ccgctttcca tgaccctgca ctctccaaat t
//
LOCUS       KCLA01003118             451 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50785upu ultra-conserved element locus uce-6294,
            sequence.
ACCESSION   KCLA01003118
VERSION     KCLA01003118.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 451)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..451
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50785upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>451
                     /note="ultra-conserved element locus uce-6294"
BASE COUNT          154 a           82 c           67 g          148 t
ORIGIN      
        1 tcaacagttt tctgtttttc aacaaataaa tgctttttaa ataaataatt aatttgtttt
       61 aataagcaag atgtagcctt tgaagcaatg aatatataaa gctttatttg ctgacctcaa
      121 attactttac tccagttata catctaggtt tctcaaaaac ctgctggcac aaaatctttt
      181 cagctttatt aatgattcag atggcagttt ctgaagagac aagtcccaca gagaaggagc
      241 acttgattaa tgacctggaa acacttttcc ttttcagctg attaaataaa attgactaga
      301 tttttacatt tttataataa aatgacccgc agggctgaga tgacacagtg aaagcagcat
      361 gttcactctt caacagattt ttattttgtc acttgtaaaa atgaaagggc taaccaccca
      421 agcagaaaaa tgcactttat caccgtccac t
//
LOCUS       KCLA01003119             581 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50800upu ultra-conserved element locus uce-3767,
            sequence.
ACCESSION   KCLA01003119
VERSION     KCLA01003119.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 581)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..581
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50800upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>581
                     /note="ultra-conserved element locus uce-3767"
BASE COUNT          177 a          133 c           91 g          180 t
ORIGIN      
        1 gtcattgtta tagccagaga atctgctaac tatctcacta cataaaaaca acattttaag
       61 gaaagatgat ggatcaagta tctgctcttc ttattaactt atccatttgt tttttaaatt
      121 gatactcttt tcctaataat tttgcacatt actgaaacaa gacctcttca atatccaccg
      181 gtttgctgaa gatgttaaag cgtttgtctg tggccagcct cttggtaaca tccctgagaa
      241 acaaccgcag ctctctcaat gtgttctctt cctggtcctc cattctctgt ttttctgctt
      301 cagacagctc acgggcagga caaggcagtg caagaggaag aacttccaga gcacgaagag
      361 ctagggagga agtcagacaa cagaaatatt aacaacacag caactcttag gattatgcta
      421 ctccaaattt cactgtgtaa ttaatcggcc tcatcaatct atcactgtat ccttaacccc
      481 acagctccaa ttttccaaaa ttggtaacta tcacacacaa aagttgtaac tgattaacac
      541 tgttaaatgt taattacatt gtcatttacc tacacctttt g
//
LOCUS       KCLA01003120             918 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50815upu ultra-conserved element locus uce-1264,
            sequence.
ACCESSION   KCLA01003120
VERSION     KCLA01003120.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50815upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>918
                     /note="ultra-conserved element locus uce-1264"
BASE COUNT          291 a          160 c          148 g          319 t
ORIGIN      
        1 aggaatcaac agttatcttt agtttcctac tgagaaggtt gtaggttttc taatttatca
       61 ccttaaatat aaaacagatg tttttcattt gtatcatgtt aaaatattag catcttcagg
      121 cacctatttt gtatagattt taaaatcctg atgaaatgct ttttttgtag attttcactt
      181 ttctatgtga aagtcagatc taattaatta agaaatctct tggacaaatt ttaagcaaga
      241 catattgtcc taagtttttt tcacctacaa gactgctgct gaagaaaact gtttctgagg
      301 ttccagtcaa aaagtagtaa tgttctatcc acacattaat gattccaaaa ttctccatta
      361 tgaacaatat ttatcaaaaa cagcccacta tcagatgaaa gatgtgcctt atcttttctt
      421 gtcaactaaa acattattca ctgaaagttt ctttcatatc tgtttcagag gtttcagtgt
      481 cattttaaat tgcaaatcaa tcatagatca tgcaagccct acttctgtag gagagattaa
      541 cgctctggct aaaattgttt acaaagccat ttgtaaacct tctgctgatg cagatgaggc
      601 aagtttacca gtttaacatt gttgatccca gagaaagcct taagcaatga cttcagaggg
      661 caaaaaaatt tgttcattta tcattattgt catgggcttt cgcaaatgat aacaatttgt
      721 cttcatccta tttttagaca atgagccaca atagagtcca gaaagccatt ttgccagatg
      781 ggagaaggtg ctttcattgc aaaatgttgt cttttctttt cttgccctat aaaactggct
      841 taagtgagaa ccaaggatat gttttaatgt caggtttccc agtagacatg atgacataca
      901 ataacagcat gcagtgcc
//
LOCUS       KCLA01003121             826 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50831upu ultra-conserved element locus uce-5459,
            sequence.
ACCESSION   KCLA01003121
VERSION     KCLA01003121.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 826)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..826
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50831upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>826
                     /note="ultra-conserved element locus uce-5459"
BASE COUNT          227 a          167 c          174 g          258 t
ORIGIN      
        1 gaggtgagac catcccagaa gacagacatc ctaagttggt ggccagctct gtaaactgct
       61 agccctgggt tttaatttcc tgaagcgtct catttctcca gcagaagggg aggggctttt
      121 tcttctcttt cttcctctcc ttctcacagt tgctctttga gtcaggccgt acctaccgat
      181 tacgcgggga aacacgatgt tgacattact gtttagaaaa taagagggag agctagagca
      241 tcacatcgtg accagcgaat gattaaaaat ttagatgact gcctttgaaa caataaaaag
      301 cttccccagc tccttaatga gcagctatca gaaataaagc atttaaaact tcacaaagtg
      361 cctccgtgga aatttcattg tctttgatgc cgtaaaataa ctgcagggtg gattcatttc
      421 aagttctttt tagcatactg gtcgtttgga aatattggga gatatctttc ttagcaagat
      481 gtggtgggaa caatgtcttg gtcgctttca tttatctgca atttgacagg agtgcagttt
      541 attaacttga aaagagacag atacattatc tgaaacacag agagtatagt gggtatcgcc
      601 tcctttttat accagtggga gtccgtgaca ctttgaactt gctcaccatt aaacgccttc
      661 ctgagttgtt gaagaggcct ttaaaaaggg agcccgtgca tttatgatgt aaattcgtta
      721 ttttgacggg ctttgaaatc tgtcatattc acgtccaatt taacgcgccg cagagcccct
      781 ttgcttttaa aaaatttttc ttttaagatt tcaaagccat tttcat
//
LOCUS       KCLA01003122             996 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50847upu ultra-conserved element locus uce-6355,
            sequence.
ACCESSION   KCLA01003122
VERSION     KCLA01003122.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 996)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..996
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50847upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>996
                     /note="ultra-conserved element locus uce-6355"
BASE COUNT          304 a          178 c          171 g          343 t
ORIGIN      
        1 tacaccctaa agagtaaaaa cagtacatca gtaatgttag ttttagccta acattatttg
       61 gcaattttga tcattaggga tggaattaat caaatatcta ctgtgtccca tttttgcatt
      121 ttatcttcca ttctgcattt actattttta tctttattaa cagctactgc tcagtggcct
      181 taaagaattt cgccattcaa cagaaacttt tctttccaga gactcatgct aattagtacc
      241 ttgtttgcag cttcagtgtg atttatgagc tactctgagc cctgaataac aaaatatcag
      301 gctacctcaa taactgtcta ttaatgtgtt tatctttcta tctgtctccc tatctgctga
      361 aatttaaacc agtgcagtaa ctttaagaac agtgacacta atgcagcatt agattaaaag
      421 aatgttactt tttacaggcg taaatgtaat ttagaggcac ttagaggaag ctatatactt
      481 aacatgattc ttggccagtg aagacaggtt gatcccactc attttgggat tgctaatttg
      541 cagttaatta ggaagattga ttctgttctc tgatgcataa gcccggccct aaacgcattt
      601 ttccggtttc cgtggcacca tgctagttat cattgtcatg gtgcaagtat aactgaatga
      661 cagggtcctt cataaagcat aatacttggg gagtttgaga aagtaaccat tagcaaacat
      721 ttttctgatt tactctgtag gctaaagtct ggtgccatct gcatttaaaa caactttcaa
      781 attacattcc tttgagaagg tttattgcaa ttagtgaata aaaccagaga gttgatttaa
      841 tcctcaacaa aaataactca atttcagagt ttgagggaaa taaaatattg acattttgct
      901 tgaaggaact tgtatcccta aatagatgca gtgggcacag catacttaag cttgtacctt
      961 ttatagaagc taacatttat tttcagtgtg ttatct
//
LOCUS       KCLA01003123             861 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50862upu ultra-conserved element locus uce-2376,
            sequence.
ACCESSION   KCLA01003123
VERSION     KCLA01003123.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 861)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..861
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50862upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>861
                     /note="ultra-conserved element locus uce-2376"
BASE COUNT          257 a          181 c          146 g          277 t
ORIGIN      
        1 aaagagaagt aactctgttc gataatcaca tatggcaaat tgctgtaacg ttttattttg
       61 gctttgttgt gtgagaaagt gtaataagcc tgattgatct atggacctta ttctttgggg
      121 aaacatgagt cacaggcgca tactttggag acactcttaa aaatattatc tctcaagtgt
      181 tgtgtgaagc tttacagcct tcctcctgca aatcttccat gtcactgtta gaaccaagtc
      241 caaaatattt acagctaaac aacttatagc atctgtcaat aaaaattcag tctgctccta
      301 aacatttcta agtgcaacat ttaaaactgc ataaacagga gtgaactagt agcagtctaa
      361 agttgtcatc attgacagtt atgatttatc ttaactctcc ctagccattt ggctaaagtt
      421 ttaagtaaac actttcagtc ttcctcatgt tctctttact gccacctccc actaataagg
      481 gatgttgcca agaaaagcag ccagacagtt catttacctc ccaaacttgc ctgaaagtaa
      541 cttgcctgat ttagacaagg gtcgaaacta ctactgcaca ttttcaacag atggaacaat
      601 gcttcacaaa ttatttacat taaagttatt tgctttcagg atgtgtgttt aacgaatggt
      661 tagttgaatg aaatattgca gctcagaaag agaatgcagg caattcaggc aagccattta
      721 tggtgataga tgtagctgtg atccctaatt ttctacaaag caatgtagca ttttgttcac
      781 attcttcact agctccttca atctgacaaa gtatggtttc cattttcacc ctcttcctcc
      841 tctgctgccc ttcccctgca g
//
LOCUS       KCLA01003124             869 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50877upu ultra-conserved element locus uce-4121,
            sequence.
ACCESSION   KCLA01003124
VERSION     KCLA01003124.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 869)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..869
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50877upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>869
                     /note="ultra-conserved element locus uce-4121"
BASE COUNT          167 a          223 c          192 g          287 t
ORIGIN      
        1 ttattaaccc cctgctcttt cttcatgagt tggttttggg tagtacctga gcatgctgct
       61 ctgaaccctt atacaatgag aataacacct tcgttcacac acactgtact tcttgccgac
      121 aacccgagaa gctccatctt caaaccctgc ctagaacctg ctcgtgtggg gttggggggg
      181 agccaaagcg ttttgctctg catgatttgt cttgttgccg gagtcacaac attcctgttg
      241 tataagggga tctacctgtg caatttaact ccgttctttt actatatttt tcttctcttt
      301 atccctttat cttttcattt ctgttcctaa actgcaccca agatgccttt gcagcttctc
      361 ctggggaagc ccctgcagca gctgaagggg cggcagcacc ggctacccca acccctgtag
      421 cagcagctct tgatgcatgt tcaggaaatg gtgggtttga tgtcgttgga cggtctcttg
      481 ttttgctggt tttgtgttta aactacctgg cagtgtggtt ttttccttaa actgaagagc
      541 atgcttagct gaactgcctg tttctgagtt gcagtaacgt cgtgcctctc cggtagtcgt
      601 agtcgacggg tctgtgctga gttttgtaag cagtaagctg ctacactgcc tattcctttg
      661 tcgtccttct ggccctgtca aacagccttc ctccccttta gtaactcagc ctctcagatg
      721 atctgtagtc tagaaagcca tgagcgtgtc tggataagct agacgttgca gcccccctct
      781 ctgtgtgtat ttgcagtatg tgcattgcct gtagttgctt tgttcttgac ttcctccctc
      841 actgatccta agtatgcata cacatatat
//
LOCUS       KCLA01003125             815 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50893upu ultra-conserved element locus uce-3054,
            sequence.
ACCESSION   KCLA01003125
VERSION     KCLA01003125.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 815)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..815
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50893upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>815
                     /note="ultra-conserved element locus uce-3054"
BASE COUNT          256 a          171 c          161 g          227 t
ORIGIN      
        1 catccccaat caaacaaaaa ccccacccca caatacaaaa ccccgcatat atatctgatg
       61 tattttatac atattcatcc tcataacttg acagatggga ggaatcttgc agtcatttct
      121 gaaagcagac aaagggccgt tggttctgct ccacatgatg atttgtgaag acagaatatc
      181 acccgcttcc gttgatgatt atatagttct atccatctgt ctgccactgg aggttttgag
      241 agtgagatac agctcacacc gtcttcataa acaaaagtag actgtgctgt cagtagtcag
      301 acacgccaac taattggagc tgtcgacaga cacaatattc tgtgtcaaca gctctggtaa
      361 cagtttgaaa cagcaatgat atgttggttg atggtgagga tgacacatat gtctctaata
      421 gcatgctaga aatctgacat aactagaaaa gaattactaa aatgtaattc ccagccacta
      481 gttctgctgt taagacttat cagtcggcac agggaggatg gagtgtgtgt atgggttcgt
      541 gtgagtgtgc ttgtacttgt acacatcttc ctctgtatca cttcacatgc tgacagctta
      601 atttgatact cacactgcct aacttaaaaa ccaagctttc cactaaattt caaggagttt
      661 gccaagggtc ctacacaaat ttaaagctta atgaagggaa catttccacc actgtcttat
      721 gaactggaaa taagctaaaa caggtcaaaa cacagccatg ttaaatggac agttgttaac
      781 tgcacgggag aatgttacct tattgaaaag gggtt
//
LOCUS       KCLA01003126             923 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50909upu ultra-conserved element locus uce-4870,
            sequence.
ACCESSION   KCLA01003126
VERSION     KCLA01003126.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 923)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..923
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50909upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>923
                     /note="ultra-conserved element locus uce-4870"
BASE COUNT          278 a          185 c          174 g          286 t
ORIGIN      
        1 ttttgtaatc caaacaactt tcttcttcca agaaaataaa gaaattacct aaattaatat
       61 taattaaggc tacatgggaa agtactttca cagcagagga gtgagacctc tctaatttct
      121 tttaaaatgt gtttcagaca cagtagctgc cctaagctaa aggataattt tttcaaacat
      181 tattaacata tccattttgg aagtcaagac aaatatgatg cagccctagc ttttgtcaca
      241 gataaatagt tctttttgta tcaagccccg gagtatttac atcaacactg caaagtccag
      301 tgaagtgtca gctcaagtca ggagcattat tatttactgt cagttaggac cttcatcact
      361 taccaacatc attggaaata ttattggtga ttgatactga tggcaatgat gattactctt
      421 gcaataagct taattaaaat aatgaagtac tgttgctcag aacttggttg ttacccaggc
      481 aggataatgt ataagcagca tgaggaagtc atcggctcag agagcgcgtc atatttcatg
      541 tatgacattg ctagggaagg aaagaggcat tgtgtgttat tttcccactg ttcctgctcc
      601 atctcttcca tgtgtgcata cacaaataat tgctggtgta gccaccacag tgattgcctc
      661 ttagatatca atcctgtctc cccataatga tgtacccatt ggtcacagtg gtggccttgc
      721 tgtttttata agatgctgag agtctccaag aaacattttg tcatcattct tcagggagct
      781 cttctagttg tgacagttta attgatcttc atctaccaca gtgagtaacc catgcaacca
      841 aaggttacaa gagacctgga gggatgagat taatttctga cctctcttgt ttcaggtagc
      901 caatgccaga aaaccccccc aag
//
LOCUS       KCLA01003127            1008 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50925upu ultra-conserved element locus uce-5205,
            sequence.
ACCESSION   KCLA01003127
VERSION     KCLA01003127.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1008)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1008
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50925upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1008
                     /note="ultra-conserved element locus uce-5205"
BASE COUNT          265 a          197 c          222 g          324 t
ORIGIN      
        1 tgtgccattc tggcagttag ctctactttg taacggtgtc tttgacttct caagactgga
       61 caaccacatt ttgttgttgt tgaggagata aaagtagtgg aagttcttat gacttttctt
      121 tttccacttc tctcttcttg gcataatctg ttttatctct catcagctat tcgtgatgct
      181 gaagcttata tctgtagttt atttttcttt catgcttgta ggcatggatc tcttctccaa
      241 ttgcacggag gaatgtaaag cactgggcca ctcagatcgg tgctggatgc cttcctttgt
      301 tccatctgat ggacgtcaag ctgcagatta ccgcagcaat ctgcatgtac ctggcatgga
      361 ctccgttcca gacactgaag tgtttgaaac accagaagcc cagccggggg cagaaaggtc
      421 cttctccacc tttggcaaag agaaggccct ccacaacact ctggagagga aggaattgga
      481 tggactgctg tctaatacac gagcgcctta caaaccaccg tatttgagta agtactattc
      541 aaaaagctat atggaaatgt tccctttgtg ggaataaatt tagctctttc tgttattctg
      601 agtgggagta acagagacac aggtttagga gcagtggaga agagaccact gaagaagcat
      661 tgttcaatgc ttttcaaata agacacaacc ttgattgttt ttagtataat gtgattgccc
      721 acaagggaag gatcagctga tgttagtggg agagtcactc aatttcattt acaggtgctg
      781 gatctctttc atcattttct tggatagatg gtttaaattt tgacattgac aggctaacac
      841 ttttaaagac caactcacga gaactgccct agaagcttct ttttgttgtt gagcactgtc
      901 ttgtgaacaa acagtgcatg tattattttg aagcaattct ttacgtagtt aacattaagg
      961 gtttggacag aggaagacaa atttttttgc ctttggtctg atcataat
//
LOCUS       KCLA01003128             674 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50941upu ultra-conserved element locus uce-6786,
            sequence.
ACCESSION   KCLA01003128
VERSION     KCLA01003128.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 674)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..674
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50941upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>674
                     /note="ultra-conserved element locus uce-6786"
BASE COUNT          205 a          154 c          129 g          186 t
ORIGIN      
        1 acctacaaac ttacagaaac agaaaagaga gtgctgtcag gctaccattt tgttctggaa
       61 gctaaacata ttgaagtgct gtgagaagcc aaagaaaaga gagggaacga tctgccaatg
      121 gcaccggatt caatctcagc tttcatctta agtgattcct ccactgcacc ctcaccctcc
      181 tgtatgaaaa tccagttacc tgtgatgtga agtcatgctg ttgtagctgt ctcccctctc
      241 tcaagtccca ggatctgaca gtgttatcca aacctcctgt ccagagctta gtaccatcat
      301 tagaaatgtc aatacagctg gctccatctg tgtggccctg gaattgcctg ataaaacaaa
      361 ccagattgaa taatgatttc ctgtcacagc tcaaggtaaa caccgtcatg gtgttagctt
      421 tggactccgt atgtgtgtgc catcttctct atgcctgctg ctgggcaaaa atcagtccct
      481 ctctcttact gagcatgaaa taaaacagta tttcaaaaac atattccagg tcctagagaa
      541 atcaactgca ccatgactag ttgaacaaag taaaatattt cctatcaggt tctgaaagtg
      601 ccaaggaaat aaaactaatt tcagaaaaca gcttctatgt ttttctttgg ctgcaggtca
      661 aggtgataaa taat
//
LOCUS       KCLA01003129             768 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50955upu ultra-conserved element locus uce-6454,
            sequence.
ACCESSION   KCLA01003129
VERSION     KCLA01003129.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 768)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..768
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50955upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>768
                     /note="ultra-conserved element locus uce-6454"
BASE COUNT          192 a          158 c          170 g          248 t
ORIGIN      
        1 gtgcctcatt tcttacaggg agaaaaggta agttgaactc tccttagtat ttggtttgca
       61 gcctatggct agtctacagg tttctgcttt tcttatctct gttctgtttg actccaattt
      121 tgatacctgc attaactaac acacatgaag caagaattgc atcaggcctt ccatgccata
      181 ctccatgaag tccttgcaat gaaatactca caaagtactt tgatacaaca gagtgactaa
      241 gggtttcctc cctcttcttt ttgcctctac tttctcttgt ctcacaggtc tgcccatctg
      301 cttcctcctg cggtgagtaa cgccagcagc ctctgctcgc tttgagacat ttagagtctg
      361 aatcgttctt ttaatttaag gtaccccaga gttcatggcc cctgagatgt atgaggagaa
      421 gtatgatgaa tccgttgatg tatatgcttt tgggatgtgt atgctagaga tggccacgtc
      481 tgagtatcct tattctgagt gccaaaacgc tgcgcagatc taccgtcgtg tgaccagtgt
      541 aagtccctcc ccgctactga ttctaaagct atcgctgcta gcagcagaag agtgtgtctg
      601 ggtaacatgg tactatacaa gtgtggtgaa aaagggaagc ttacaaggct ttttggggat
      661 gagtggaaag gtataggatg cattaattga agcttttaaa attaagtttt gcatgtattc
      721 atgctctttc ttcagtatgt aagaaggtat tgtgtaggat ttaaacaa
//
LOCUS       KCLA01003130             517 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50970upu ultra-conserved element locus uce-4862,
            sequence.
ACCESSION   KCLA01003130
VERSION     KCLA01003130.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 517)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..517
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50970upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>517
                     /note="ultra-conserved element locus uce-4862"
BASE COUNT          163 a           96 c           92 g          166 t
ORIGIN      
        1 agaaaaaaaa atagcaaaat ccaaagttca tgtatttccc caattttttt tcgaaaaaat
       61 ctgtacagac agagagaatt tgcaatgtat ctgcatagat cagatctctc gcttttccat
      121 gcacctcctt aaaaacctgt aggaacaaaa ttttccctct gcacaaaagc tgctccctgg
      181 atcagatttt gtacttgctg ggtatttctt tggctgatgt cgtaggtccc ttggtaatat
      241 agaagttttg aaaattaagc atcagcactg agaactggga ggacaataga tagaggagct
      301 tcatcccagg agacaaggaa taaatattgt atcttcgcct aataaggaac tgtaggttct
      361 ttcaacattt ttatacattt tttcctccac tctttagaac gctttttctt acccaggcta
      421 atctgggagc taatctgatc gaagggggta ttttgtgtac attttattgg gaagacataa
      481 agctaatata gattaataca tattattaaa ccatcct
//
LOCUS       KCLA01003131            1032 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 50986upu ultra-conserved element locus uce-11,
            sequence.
ACCESSION   KCLA01003131
VERSION     KCLA01003131.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1032)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1032)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1032
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="50986upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1032
                     /note="ultra-conserved element locus uce-11"
BASE COUNT          287 a          218 c          194 g          333 t
ORIGIN      
        1 tgaattcaga agtgctgagc agttttgtct cactgtagac tgctccgtaa atcggcagca
       61 tttggcagct gagcatcttt ttcagaataa aaaacacact tgaaaaagtc ttttacttca
      121 tttgcacaga tcaacttttc tcttgcacta tgtcactttc cagccaaaat gtattttcaa
      181 atgtaatgga aagctaaagg atgatcgtta attgctaatt gcttttcatt tatccgccag
      241 gctgaatttt tgctatttta caagaagtta tttaaacacc ttctggccaa gaatatacag
      301 taggaaaggt tatagccagc cagggatttt acacgtgccc caggtaggga caaacacaca
      361 actgtgctcg ctataatgtc acttcatgca actttctctt gccactagtt aggccttaat
      421 atacttacaa agttcctctt ctaatttgaa ctgtgtgaga ctctggctgg aggctacttc
      481 tgtgtcccag tgataaaaga agacataaaa caacccagtg cccgatcatt ctccctggct
      541 gtcggtgaat catgtttaat agcatctcca ttgcagtttt ggccaatttg cttgcaatgg
      601 catccttttc catgggctta ctgctcagca ggccctgaag caatctatga ataacttccc
      661 aacagatgct gtttatgaat tgaagcaaat ggcttccctg tttctctttt ttctcacttc
      721 aataattttc agttacatta cgatgaatat ttatagtcct atagcagtgc ataaaaatgg
      781 gaacaagcag acctgtgcat tgttccatac gtgagtgccg ttctaatggg ttttggctcg
      841 atggttttaa taatgttctg ttgatggact gaaaagagaa tgcaaattgt agatcagtca
      901 ctcccattca ctgttttagc agactgggca ttgatggaag gctgtattag atgcacctta
      961 tcttgtggaa ataatacgcc ccctaataca agcctacagt acctttctac tcagctttat
     1021 ttaggtcaac ta
//
LOCUS       KCLA01003132             917 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51002upu ultra-conserved element locus uce-2357,
            sequence.
ACCESSION   KCLA01003132
VERSION     KCLA01003132.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 917)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..917
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51002upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>917
                     /note="ultra-conserved element locus uce-2357"
BASE COUNT          275 a          169 c          195 g          278 t
ORIGIN      
        1 gtgagttaga aaagatgatt cttctttttg aatcttctcc aacggttgct acagaatgtg
       61 gtttaatttg tctaagtttt ataatgaagg atagacagtg aaaattatta tttgtaatgg
      121 gcttttcaaa tgtgacttcc ccagggtctc atagtcgagg aggcctctcg cccctgccca
      181 ttccatttca gtcaccaggc actttcctct catgaataca atgattatca acttattttt
      241 cacttaagag gggaggagga gggggaattt aaactgtctg cttgacaatg ctttcacatg
      301 gtgatgaaat gtcgtcttcg tatctgaaga gaacatgatt attagcactg aatctgacag
      361 acacgatttc tgaatatttt tgtggcatta atttaaatca atgtaatgtt tgaaaacatt
      421 tcaggccctc aaacagctga tgcagcttag attcaattat aacaagttgc aacacactgt
      481 caagtctttt taccaagtca ttagtcaggg attttgaatg cacggcctct gaacgcagtt
      541 tggctggctg acagctctaa ttgttgggaa ctgctaaagg attgctaatg aactggggga
      601 tctgttgggc ctgtagcttt cttcaaggat aaatttttga aaactttcac aagatcaaag
      661 cagcataaca tggaccattt gctaaattgt cagcagtaga gtgaagcagt ctgagtccca
      721 gctttaaacc tgaaacttca gtagaaaaca ccatgcaact cctgcccctg agttttattc
      781 atgtgtcagt aaaactgtac tgagaaacaa cgacttgaag gaagagaccc agagctggaa
      841 tgaccactat ggcttaatta ggaggagcag aaattgaaac aaaatttcct ctctgttttt
      901 agtaggtgca agaagga
//
LOCUS       KCLA01003133            1112 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51017upu ultra-conserved element locus uce-4888,
            sequence.
ACCESSION   KCLA01003133
VERSION     KCLA01003133.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1112)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1112
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51017upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1112
                     /note="ultra-conserved element locus uce-4888"
BASE COUNT          318 a          215 c          232 g          347 t
ORIGIN      
        1 aaggccaact tttgaactcc agcacgagat ttcactgcaa ggtattacgt gaggcagtta
       61 tgtggattaa aggtaactgg aaggatggag acattggcaa gatacagaaa aatatataaa
      121 tatgtaaatg cataaaggga agtcaagtgt gactcccttt cctaattgcc taacatgatt
      181 cccactagat gcataaatta cagctcctat taacagcact atgaataata atcagtttac
      241 tttctggctt gtatctaaat atactttcta tatgatttca tcttttattc agctgtttaa
      301 aagcagaaca tctaattaca tttcctatta gtctacatta aatttttttc accacagagc
      361 gtgtgtgatg actgattttc taaaaacaga cagaattttt tagcatatgg aaaaatcatg
      421 ttattattaa tacattccca catgactcta catttcaatt cccttaatta tttagtcact
      481 gctgattatg tcttttcaca attcattatc ccatttcctg caacgtgggc attttattca
      541 ttaagtgtca aaatgaaggg cctgacctcc aggaagataa tcaggaaata agtggcagat
      601 ataaaaggtc tgggtttccc ttaagtgctc acttatttca gtagctgtgc catgttttta
      661 gtaagcagtg acagaagtga actgttgttg gtaactgcag aaaggcatgt ggctgccagt
      721 ctgcatgatc tctgttttcc ccaatgcatg ccgcttgcgt cagctgatag tttctgccgt
      781 gcagtgacaa gaatggagtg gtgtgacagt aaagccatat tgcttcttgt gagacagagt
      841 aacactgcct tttgaatata tagaggctgg ctggtgcttt gatgcatggg ttgacctcag
      901 gagccaggtc tttgcaggct tttgtcaccc tcaggtgact cctgctcccc aaaaaacatt
      961 cagactatac taagtttcca gttgggaaac tgcttgcatg ttccttctga agccagacct
     1021 ctggtaaggc tgaaaagcct atgctggtag cccaggaggc atgacagagg gtcatatttc
     1081 cagactaagg gttagaccat gtggctgggg tt
//
LOCUS       KCLA01003134             715 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51033upu ultra-conserved element locus uce-5840,
            sequence.
ACCESSION   KCLA01003134
VERSION     KCLA01003134.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 715)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..715
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51033upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>715
                     /note="ultra-conserved element locus uce-5840"
BASE COUNT          236 a          133 c          130 g          216 t
ORIGIN      
        1 aaaaaggacc ataggacttc atctgtaatt tgcgctccat gtcaggatca actacaagtt
       61 ggttttatat caaaaagaaa aaaaaacaaa ataaatactt gttaagctgg aaagactatt
      121 gcaagttaac tttaggcacc tgcacctctt ggcttgaaga atttgcaaag agcatggtag
      181 caggtactac tgccgcattg ggtataaaca gggggaaggt tccccagtta atcacagaga
      241 attttatacc tgatgatctc ctatgaatca gttagattga tgctgttgta ttggtcagca
      301 tgtaaaataa cctgtcatca gtacagaacg tgatatgcac attatcagtg taacttaaaa
      361 ttcatagcac tttaacacct gtttccatag ctacagtgta atccagacat ctgatgggcc
      421 agactgcctt tgccaggcct gtcatttcag ggaaataaat taagaaagct aatcacaaag
      481 cctgaattgt actatctctt taaagtacaa caaccagacc tgaaatctaa tcaagaatga
      541 acatcgttgg gatgaaatgg ataaaaacat tttcctgtaa cctttgtagg aaaatttgaa
      601 agtagcctcc tctgtatctt tttttcccct cccaaaagca tgttgtatgt tatacctggc
      661 agttatattt gcagaaccat atttcttgat ttttgagaag ttgtaacata tcttt
//
LOCUS       KCLA01003135             924 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51047upu ultra-conserved element locus uce-4704,
            sequence.
ACCESSION   KCLA01003135
VERSION     KCLA01003135.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 924)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..924
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51047upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>924
                     /note="ultra-conserved element locus uce-4704"
BASE COUNT          272 a          182 c          168 g          302 t
ORIGIN      
        1 cagcctttca tttgcagttc taatattgtt taagggtaat caaaagcctt acacaaactt
       61 ggtgattaac acaacaaaaa acttttagat ggacatttat atgaactaag tgaggagtga
      121 agccttcaat aattgttcat atttcatggg gacttggctt ttcatgaatt catatcagtg
      181 tcatcttcca tacatattgc aggatcgctt cattaaaatt ctcactgcag cactgaacat
      241 ggtcatactg aaatgaggct gacaaacctc atgtctgctg cacagataac cagatcttat
      301 gaaggtgaaa ttagttttcc agatctgtgc tgttcacttg attgattcca tcttagaagt
      361 catatgacaa tgtttcctgc atgggctgcc actgtcatgc aaacatgacc tgataacaca
      421 ttgtcaggag tgctcagaga gctaacagca atctaacatc tttctactga gtgtgaagtt
      481 acatctgaaa tgtgcatatt tgataagcag ttcctcttct atctgtccct ttcattttca
      541 gaaagttaat cttctctgct ccaatgaaac ctgtgtaaaa atgaactggc ttggaaatgc
      601 agcaggtgtc tccatatgac aatacatggg atggctgagc cctcaggaca tccaagttat
      661 cctatgattc cttaacagtg gtacagacag gagcagaagt accttgtgtc tttcagtccc
      721 ttttaagttg atgggcttcc aagtatcagg ataaaatttc tctcaaattc agtattattg
      781 ctatttggtt cttagatttg ggctcaggta caagacatac gtgatattct tctctatttg
      841 caggtgagcc aagctatata taaaatttat atttcccatg taacccccat atataatctt
      901 aattcttgag taatctctgg aaat
//
LOCUS       KCLA01003136             276 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51063upu ultra-conserved element locus uce-3604,
            sequence.
ACCESSION   KCLA01003136
VERSION     KCLA01003136.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 276)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 276)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..276
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51063upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>276
                     /note="ultra-conserved element locus uce-3604"
BASE COUNT           63 a           79 c           76 g           58 t
ORIGIN      
        1 cggcgggagt tacgcgaaga agggggagct gcggccgacc aatgagcgcc cacgtccgct
       61 cgtacgtcgc tccgcccccg gctcccattc atcaaggggg gggacggtgt cgtcttttca
      121 attcatttat ctgcaggaat gattgccgct atcagtctcg cgttcaccgc ccggctgagg
      181 aggtgaaagt ttctccccag gaagataaac cgcaaaagac aatattgtgc atgatttgcg
      241 cctttttttg caaagcgaaa aaaaaaggcc cccccc
//
LOCUS       KCLA01003137             353 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51078upu ultra-conserved element locus uce-7557,
            sequence.
ACCESSION   KCLA01003137
VERSION     KCLA01003137.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 353)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..353
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51078upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>353
                     /note="ultra-conserved element locus uce-7557"
BASE COUNT          124 a           70 c           54 g          105 t
ORIGIN      
        1 gctctgacat gatactttaa taatgtcgcc aatcctctga taagttgttc gcatcagata
       61 tttagcccca ataccaaatg cttgagaatc tacattgatt ctctttacgt tctgcctctg
      121 cattccaaga tttatgaata ttaagttgtg cttgccccaa agcaaaagta tactcgctaa
      181 gatatttgct gacatcagga gtctctctgc cccattttta aaacaaaggc attaataagg
      241 aagcactgta aaatgtacaa cactgaaaaa ataaggaaaa ttcagtattt ttaataaagt
      301 gaaaaaaaaa ttctcaagtt caaagcaccg catgtgagct accctaaata atg
//
LOCUS       KCLA01003138             220 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51092upu ultra-conserved element locus uce-5987,
            sequence.
ACCESSION   KCLA01003138
VERSION     KCLA01003138.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 220)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 220)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..220
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51092upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>220
                     /note="ultra-conserved element locus uce-5987"
BASE COUNT           73 a           30 c           44 g           73 t
ORIGIN      
        1 gttgcttcca gtacaaaagt agattagttt ttctttaaga cagagttaaa atttttgcag
       61 ctaatttatt ttaataagca ttcagtcact gactgctgca gaaaaaggct aaactgtaat
      121 gaagagccag gaaagaaagc atgacttaat tatttttctg gggtgggtaa tgaataaatt
      181 agctacactg taggcttgcc atttgcatgg aatttattac
//
LOCUS       KCLA01003139             800 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51108upu ultra-conserved element locus uce-6060,
            sequence.
ACCESSION   KCLA01003139
VERSION     KCLA01003139.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 800)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..800
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51108upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>800
                     /note="ultra-conserved element locus uce-6060"
BASE COUNT          212 a          176 c          141 g          271 t
ORIGIN      
        1 ttgtacaaaa atacctttaa aacttggcag ctacaaagct acagatctgt tctgtgaatt
       61 tgatcattgc aaatacatgc atgggccacc cttttacctt cacagtatgc cttgaccagt
      121 ttttttacct gtacaatttt gattggcaaa cctgaattct gaatgtgctt ctgtgctggc
      181 tgtacctctg tatcttcatt gtgaattgcg aatgtaatat tgaccacaaa cttggttgta
      241 ccacagcctc agaatgaaat ggaaatactt aatgtgtttt actgtgcatt ccaagctaaa
      301 tactgtccag tgcagacact tgccagtgca acctctgaac tactatgctc aatctcctca
      361 gtgatctttt acttccatct ttctcaccat gctgacttct ctcctctgtc tgttcagcag
      421 tgggagacat ttagcgaacg ctcttcaagc tcacaaactc tgacccaatt tgattctaac
      481 attgcaccag ctgatcctgt aagtcaatca cttagcttgc ttgtttgaaa ttaattttat
      541 taacacggaa tttccattca ttgtatttag ctgttatgca tgattccatg gactgcttgg
      601 tggggaatgg tggcaggctt cttgggtttt tcacttattt taggaatatc cattttctag
      661 cacagctcac atttaatagc tgagcacaaa gaatgccctt ggtttgggtg tgatacgact
      721 cacattacac aaagtgctta aagataatgg gtttttaaaa atatttataa gtcagcacac
      781 ggaccactcc cttgtcttca
//
LOCUS       KCLA01003140             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51124upu ultra-conserved element locus uce-1345,
            sequence.
ACCESSION   KCLA01003140
VERSION     KCLA01003140.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51124upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-1345"
BASE COUNT          275 a          167 c          132 g          264 t
ORIGIN      
        1 tggactgaga aacgtacagg catgtttctt cctgggtggt tatttgaaaa gcctcaagtc
       61 aaggattttg cagctttcca acaaattttt gtcagaaaac aaaatccatt tctgatttct
      121 acaaaagcac aagcccacgt agctgtttgt aagattctag tgtaaggaaa aaaaaaaaaa
      181 tctttatccc ctaaaccaga atccgatata atttgtcatt aatttactga atctgatctt
      241 ggacaatgct tctgtagcgt agatgcatgt cccagcatct tctttttacg tacaaagaaa
      301 gcgaacaatg aaatctgaaa ccagttgaga ttatgcttgc ataaactcta atttgcacag
      361 ttcacagcta ctccttgtgc agtaattgct ttatgcggct gtaatcgata acctgtgaag
      421 acagcacatc atctaaaccc cattccaaat aatatttctg tgtagtgtta gctgtgaatt
      481 taccctgtac agctctatct ctataaatat aattccatgt attaatagtc acagaaaggc
      541 tgtaagtgag caactatttt tatgaaccgc accactatgg ataaattaac ttttacagaa
      601 atcttgttta ctgtatgata ttctaaacca ctgtcaaata aaatatatat ccaaaaattt
      661 tctttttcaa ttgtacatag cctgtgtcaa ttctgagtga cagacttccc tgttacacca
      721 agaaaccata ctatacatcc atagcagtag ggctaactac cgtcctatga aagaaggaac
      781 actcctgtct gatctcttat tccaaagcag agtaccattt atggatatac atttaggt
//
LOCUS       KCLA01003141             847 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51140upu ultra-conserved element locus uce-4071,
            sequence.
ACCESSION   KCLA01003141
VERSION     KCLA01003141.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 847)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..847
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51140upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>847
                     /note="ultra-conserved element locus uce-4071"
BASE COUNT          215 a          197 c          170 g          265 t
ORIGIN      
        1 tcagtgcaaa cacaaaactc tccccaattt ctgtctccaa gtttctgctg aaaatggcag
       61 agccattctg tgctctccag gtcagaagag acctatcgtt tactggtctg ctgcagccag
      121 gggctgcaca actagtggga tctgtatggg aaactttctg ctagcacatt agtaaataaa
      181 gctcctcctt atcccactga aaattccctg tgtggtgttc tcccatgcct ctcctaagcc
      241 atgttttctc ctggagttca ctattgtttt gtcagcccac ccatcacaaa gcagaggtca
      301 catcaacatg accttttgct ggtacaagga ggctgctaaa taattcacgt ggccaacttg
      361 atttcggggt ccacatttgt tttttccact ctcctaatca agatgctcat ttaattctat
      421 tccagcacct gttcagcaat taacacccta caatttgcat cttaccctga catttgctat
      481 ctttccaatt agtttttata tcagtataat taggtagggt tattacagtg catcaagcag
      541 ggtcgaggat attcccaagc ctttaagctc tttcccagat ttgtttaggg aagccactaa
      601 gggtaaacgg ttgattagga tcactgtttt tcttcttcat tcagatcagg caaaaactgt
      661 ttccccatgt ggctcatgaa agatcaggga aatatgtcag tctggaagaa ctaatattgt
      721 gtagttcatg acttttgggg tgaatttaca ggggattata agtgagggtc aggctctgta
      781 gccacttgct gtagctctcg cgaggggacg ttatgctctt ccttcatatt acaccaagca
      841 aattgca
//
LOCUS       KCLA01003142             583 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51156upu ultra-conserved element locus uce-6652,
            sequence.
ACCESSION   KCLA01003142
VERSION     KCLA01003142.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 583)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..583
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51156upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>583
                     /note="ultra-conserved element locus uce-6652"
BASE COUNT          174 a          106 c          128 g          175 t
ORIGIN      
        1 cacataagca tctttagcat cttgaggtca ctcatgtaaa agagataaca gacacgggac
       61 ttctctgttt tcgctggttt aattacccca gcaggatgcc agtccagact ggatggtact
      121 cctaggttca ctctgctgca tgcacttctg ataaatggga aaagaataga tgacctggca
      181 gaaggctcag acaataacat gtgatttaca ggacatgaat gcagctactg taagatttat
      241 ctgacagccc tctccgatag tggactgttg agtatccgat ggaatgattt ctagtctgga
      301 aagtctgcta ctgagtagcc atacacatta tttatttatt agatgttttg ggttgaaacc
      361 atttttaaat gatgcacttc acaatgctga gccataaatt tagtcttaaa cccgagaagg
      421 gaggtagtgt tattggaatg tgtgtcaggc tgaattagga tgagcaacac aacgctttta
      481 taaagtggcc ttgaatgcaa cgtcgattct ttcaaagctg atattaatgt caaataagcc
      541 gggacacttt gcagtaatat taaatgaagg atttctttat gct
//
LOCUS       KCLA01003143             691 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51172upu ultra-conserved element locus uce-4531,
            sequence.
ACCESSION   KCLA01003143
VERSION     KCLA01003143.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 691)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..691
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51172upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>691
                     /note="ultra-conserved element locus uce-4531"
BASE COUNT          183 a          151 c          163 g          194 t
ORIGIN      
        1 gcgtccgggc gcgcctcgcc gcagccggag ccattcatcc cccgcccctt tgttcgccct
       61 gaaagtaacg ctgtgaatta aaagaaatga cagtatttcg tatctgctct cccggccagg
      121 agaagggccc ttgagcctgg caaaaatcag gcagatcatt catcgtgcca ccccgcacct
      181 gtgggcttgg cattgaaaac cccgcggacc tcttcctatt caacttaatt attcccccaa
      241 ggcgcacaat ggttgaaatg gagcaggttg gagtctgttt attggtcgta aatgtttttc
      301 tgaagatctt ctgaatctca ttgttagctc gttgtttgag gctgccctct ttctttcaga
      361 cgagagtagc cttggacttt tcaattttca atcgtaacat ctgcttaatc gtacggatca
      421 aaatatggag acacaaaaca tatgtaatgg ttgatttgtt aaatcctggt aatgagttat
      481 taacaaggga aaacaatagg gcaggatggt gagagcctta tggtaacaga gtcactttat
      541 gtaacgcctg acgtttccct tcttgataaa tggaactaag gtctgagcgc caggtgatag
      601 caagaaaatc aatgtcttta ggggccggca cagagacttt ttttctatgt gaaaaattag
      661 gagacataaa atttaattgg ctgatcaggg g
//
LOCUS       KCLA01003144             930 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51188upu ultra-conserved element locus uce-4353,
            sequence.
ACCESSION   KCLA01003144
VERSION     KCLA01003144.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 930)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..930
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>930
                     /note="ultra-conserved element locus uce-4353"
BASE COUNT          272 a          199 c          182 g          277 t
ORIGIN      
        1 gctgcctact ggatccagta gcacgtgcca tttggcagaa ctgattgagc aaaattcctg
       61 ttacagaatg caacttccta tttttatagg tttgtacttt ttagatgcat gccaagtgca
      121 tttcctgcat tttcctttaa gttaatgtgt gagctagaac ctagcacagg atttgtaata
      181 caattcttgc attgctttag gctaactgtt gtaacttgtg gtttctttaa atccctgagg
      241 gctgaagaaa agtctcagta tggagataca gccacctttg gcagctctgt tctagcattt
      301 tatgatgtgt gctacaagcc aacttctgaa atgctcagat acagacttca ttacaacagt
      361 taaaaatttc atgcacctct tataccaagg gaatatgtaa cataatactt actagatgag
      421 aaccgtcttt aacttcttgt acttgctgca cctgcggttc agccacaact ttagtgtcct
      481 gatcagaagt catgagctgt ctgctttttg gctgctcaga gagaacttta ctggtcacct
      541 ttgtaagctg cggaaatagg aagacaaaag attctgtaag tggttgttga aattccccag
      601 aactcacagc cattccagac atgccacgct gattcagacc aaaggttcaa agaacttcaa
      661 ctcaacatgg ttacagagaa aattacagca gaaggggagg ataaaatgaa cttgcagata
      721 cgctctgctc cagcagctgg ttgccttggg agtgtagatg aacacttgcc acagcatcag
      781 acagggaaat tccactggga aagtttcact tgattctcac cttaattatt cagataggtt
      841 ttcaaaccgt aactacttca taccaactgc aaggctaact tattaagaag catttactca
      901 caaaccaacc tttgtcttgt aagactactc
//
LOCUS       KCLA01003145            1258 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51202upu ultra-conserved element locus uce-1964,
            sequence.
ACCESSION   KCLA01003145
VERSION     KCLA01003145.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1258)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1258)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1258
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51202upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1258
                     /note="ultra-conserved element locus uce-1964"
BASE COUNT          374 a          231 c          276 g          377 t
ORIGIN      
        1 gctaaagaga acatagatgc cgtaattgct gtcctctacc aagtactata taaatgaact
       61 tgtttgtgtg ctgcttggag aagcacattc attgacaagt gtaatgtgta gtaggcagtc
      121 tcagctgacc cctcacaaag gctatcgagt ccctttttta tgcaatgaag gctttgatgt
      181 attctgccgt gaagcacttg taagattatg aagaaaggga gtgatgatca atttgtaaaa
      241 aaggagcaac attttggctg gccctgtgac agcacagcca tttccgccaa ggcagcaggg
      301 tgaataatgc aaaagccata ttccccttgt gtttaatctt gcattgtttt tgcagagaaa
      361 atttctgctt gctttctaag tcatgtcatc ctcggttgtc atcccgtctc tcaaaccatc
      421 aaaacggtat taagtgttga aagctgtgca gctagagaac tttcaaaagt cagaacccat
      481 ttgcagagca gcccttgtag aaaatgtatt ctgttctcgg cagaattttc cttcagttct
      541 ttccactgag aagtttactg atttctccca gtggaatctg ctggaattta tcggttcatg
      601 gttggcagtc acagattaag gtaaatgtcg atccgtaatg accctctaca tgttagtatt
      661 gcagtaaagc tgggctttta tgtcaaagat atcggagagg gagctattac acatgacagg
      721 ggtgatcaag ggactccaga ccaaggcaag cattattaaa tattgactag ttctgtgatt
      781 tatgtagagc tggaggaaaa aagtgacttt ttaaccatta tatattcttc agcaacgaaa
      841 accagccatt tatctcctgc tggtaataaa gaacagagtg tctgcatatt ttagtggagg
      901 aaaaacctgg ccttataaat gagatggact ctttcatgat aacatttcag tttgctaatt
      961 gccaaaagca aaacaggcaa attggaagca attataagac ttcacttaaa gtaccttcag
     1021 tgttagttca actcaggaga gctgggtggt ggtgaaagaa tcactgggga atggaaccca
     1081 gaaaatttca ttacgtttgt tcactgttgc tgaaactttg ctttgcaatg ctaaataaat
     1141 agtgtttgct ggagcaagag ctccagcaat tgacatttat gctggctgtt ttgggggtat
     1201 gcagggagga aattaagcat taattcatca aacttacata agacatcatc tgttcact
//
LOCUS       KCLA01003146             851 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51217upu ultra-conserved element locus uce-1533,
            sequence.
ACCESSION   KCLA01003146
VERSION     KCLA01003146.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 851)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..851
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51217upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>851
                     /note="ultra-conserved element locus uce-1533"
BASE COUNT          273 a          185 c          156 g          237 t
ORIGIN      
        1 ggcaatacag ccgcctctcc ataacatttc aattaaaacg ctcattatta gattctatta
       61 ccaaaaaaat tccaactcca accctttttt gtttggaact ggagcaagaa gtcacaaaat
      121 gatactacaa atctcactct gcagggtaag aagaagagct ggacctgccg gagaccatcg
      181 ggtaatcaag caaggataaa ggtgtgtata gaatctcacc ttcaggtacc ttggggctag
      241 caaacaattt gttctatagg aaattataca gctctagatc actgcctatt gagatccacc
      301 attcacagct ttttgctaca acatgaatgg cttattaaac ctacaacata tctgttttag
      361 ttaacttctt ggtggaaagg gaccaggaaa acaaaatgta cttaaatgct gatttttttt
      421 ttccaggctg aatgcctttc atccaataag acattcaaag cagtgaccca gcaaatggat
      481 tgaaaaagca atcttccgtc tcagtgccgc attatcattc ctattcagta ttctcggtga
      541 gatatctcaa tcagctggat gcgtgtgtaa gtgacagcgc agcccattgc tgggttaatt
      601 aaacatttga ctttaacacc ctccccgtca ttaagcaaat aaaaacagat aattcaaact
      661 gcacttcatc cacggggtac acaacataca tgtcaaaatt aagagagtcc aaggccctca
      721 gggagttcta ctcgtggagg taatcagttt aaatcttatc tggtttatca attattctat
      781 tgattaaagc agggtgatta tacaaaactc cctcttgcca catgggatac atgtcagcgg
      841 agcaggacaa c
//
LOCUS       KCLA01003147             478 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51248upu ultra-conserved element locus uce-2289,
            sequence.
ACCESSION   KCLA01003147
VERSION     KCLA01003147.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 478)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..478
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51248upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>478
                     /note="ultra-conserved element locus uce-2289"
BASE COUNT          146 a           89 c          109 g          134 t
ORIGIN      
        1 taatattata tgatagccag gatatgagag attcactaag atgtccctgt ccttaatgag
       61 aaatcacaag gaagattact gccaccgctt gcctatatgt tctgacttat cagttggtct
      121 gggagtttag gctcctgcga tattgaatga agattataag ccagatgggc cacaaattct
      181 gtcaagcctt cttggcagct gctctcatta caaaagccag ccagcctttt ccaaaaataa
      241 gaatgtgaag caaattgggc ttatagaccc ttataatgca attgcacgca gagatgggga
      301 cctgagcggg caggcagaaa tattattgat ggctgctgaa aacagggaat aagatgttat
      361 taagccaagt cagagataga tatcgatagc taatataaag cctttattgg tttacaggct
      421 ccaggaaaga gggttcagag cttcgaccct ttgctttgct tttaatttca ctggagat
//
LOCUS       KCLA01003148             558 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51263upu ultra-conserved element locus uce-2336,
            sequence.
ACCESSION   KCLA01003148
VERSION     KCLA01003148.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 558)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..558
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51263upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>558
                     /note="ultra-conserved element locus uce-2336"
BASE COUNT          161 a          116 c          140 g          141 t
ORIGIN      
        1 ggcaggacca agcactgagc aagtctgggt tttagctagc aacagaggtc agtgtgaata
       61 aagagtctac acaagcaggg tctgaaaaag gatttgggtg aggaaggggg tcgcagtggg
      121 ttcactggca agacctgggc catgcagcct atggtcccag agcatccttg ctggccctaa
      181 aacaagccaa gataactttt ctgccatcaa tttctttaac aatcaacaaa aaagtaacag
      241 caataactgg gatgatctga aagaggttct ttgctgcccc cctccccctt ttatttgtct
      301 gaatgacaga ggatttaaat gcaaagtgga tctaatgcac accctgaagt cggctggcag
      361 tatgcaaatg acctgtcaga ttaaaatctg aatgaaagag ataacaagct tatcttcata
      421 ataaaagact cttacgggca aactatctga cgcagtgttg atgtttgttt taacccgtgg
      481 actttggaca gtgcaatatt ccaggggctg cgctcctctc ggggtgcgtg tgtttgtatt
      541 tgcgctggca acaaaagg
//
LOCUS       KCLA01003149            1012 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51279upu ultra-conserved element locus uce-1052,
            sequence.
ACCESSION   KCLA01003149
VERSION     KCLA01003149.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1012)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1012
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51279upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1012
                     /note="ultra-conserved element locus uce-1052"
BASE COUNT          297 a          220 c          181 g          314 t
ORIGIN      
        1 tacccgcgtg ccgaaggcct ccgcaagcaa ttccacagga gatcttccac gctgtaatgc
       61 gaaaacatca tctcctcata atttctgagc gctaatataa acagattcct gtctgaacat
      121 cttaatgcaa atatactgcg gttgtctagt ggaaaacagc accgtaatga cttccactat
      181 taaatttgtg ttgcatttga aaaggcaatg acagcgtatg aagcactaac cctggctcat
      241 tgtttctctc atctctcaga acatcccttt tctggatcct ttatttatca agattaatca
      301 ctgtaggcat cactttttgc gcgcgccata cgttcatagg aacagcactt aatcccgaaa
      361 gttgccggat ggatggctct tacaatgggc atttacctct gaaattggtg tctatgcttg
      421 atgttgcatg catctagttt gcatacaaat aaagaattat acttgtcagg aagcaggtat
      481 aatcaatgaa aggcacagct gtcttaatca ggtttcgtta gccccagcag ctctccctga
      541 gcaagataaa gtgtttttca gaggtgttaa taattactca taatctctcc tatcatatcg
      601 caagactttt tacatgcctt tcaattttaa gcaacgatta aagcaattaa gattgctgca
      661 tttacaagct atttttcatt cccagaaaat atcctacacc tacttgtcca tatggtactt
      721 cgcaattgga acataaggat agtttaggaa aattacgtat gctcttatcc ctaatctgcc
      781 tattactgga tagtatctta actaatgaac ctgactttca aagctgctct taagtggtgg
      841 tcttgtcata tcagagagac acaaaatgtg taacccaatc agtcaaggat gctttgaaca
      901 agtttgtttt gttacaatat gcctggctta tgcataccgc ctcacgctgt gaatacgatt
      961 agcaccgaat ggtgtttgaa aagcatttca atggaaattt cttagccaca ac
//
LOCUS       KCLA01003150             744 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51294upu ultra-conserved element locus uce-3377,
            sequence.
ACCESSION   KCLA01003150
VERSION     KCLA01003150.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 744)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..744
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51294upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>744
                     /note="ultra-conserved element locus uce-3377"
BASE COUNT          254 a          138 c          146 g          206 t
ORIGIN      
        1 gtatttcact tggcttttca aagtagccat aaaacatagg aaaggcttag gaggaaaaga
       61 ttctgctccc accataaatc aaaagtgagc agacaaaggt caaaatacca aaagccacaa
      121 gaacattaac acttaggata taaagatttc ctaagaaact aatgcttgct ctttccccag
      181 ataaagcaga caccttatct ttgggagttt acaaaatgga gccaagctac acaagtaacc
      241 acttaactaa accaaggcct ggatctttta gcagtctgca gtcattaaag ctctcaggaa
      301 gtctcccagg agccaatatg cttgcttaag tatatgctgt aaaaggtccc tgagatttac
      361 aaggaactgc tccatgctaa gctaggcacc atctgataaa caagcaattt tagctccagg
      421 ctaaacgatg ctctttgagg ctttgattta caatgctgca gatgatatat ttgtagttct
      481 aggataggtt ctgctgtgga gctgctgtga ttactcatcc atgaaccaag ttagggctca
      541 ggtcttcaac taggaggtca gaaaattgtc agtggagcaa gaaatatttg ataaggttta
      601 tttagatgct aaccacatta aaaaaatata ttaaataaac agggatgaac aagtttaaga
      661 tttctaggga gcaagcctgg ctttattttt ttcatagctt aatcttaaat gtatgttgag
      721 tgaaaaaata cgaaagtcag tccc
//
LOCUS       KCLA01003151             590 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51308upu ultra-conserved element locus uce-5042,
            sequence.
ACCESSION   KCLA01003151
VERSION     KCLA01003151.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 590)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..590
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51308upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>590
                     /note="ultra-conserved element locus uce-5042"
BASE COUNT          163 a          137 c          139 g          151 t
ORIGIN      
        1 taccttaggc atgtaaatga ctagttagtg agagcagagt gaaaaggaac ccccaaactc
       61 cacgatgcac agaggtaacg acaacaacat ttcattctaa cgagctttcc cttctcttgg
      121 aatgtgccag atccgtctgg tgcgagaaga ccccagacaa gtaattgagt tgagatgatc
      181 cccgatcgct ccttgggaaa ccccgccagc agcttttttc aagcgagtct tagaggaacc
      241 ctgctagctc tgcctttgtt ttgcagttct ctgtcaggaa tgaagtgatg gctaccagtc
      301 acgtcacaga tgaatgggtg acacaaaagg aaaggagtag cctgaagagc tatattgtgc
      361 gccgttacat agcaaccccc aatggggtgc tccgaattta ccccggttcc ctcatggaca
      421 aagcatttga tcccaccagg agacaatggt gagtttttag ggtcctgcta gcaaagcttt
      481 ggataatctt aaaaagcaat aaggaaaata gttggtcttg atttcgtagc ccggttttct
      541 tctagccagc tagcaactac ttaactagag atgtttttcc cgtggctgaa
//
LOCUS       KCLA01003152             269 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51324upu ultra-conserved element locus uce-1161,
            sequence.
ACCESSION   KCLA01003152
VERSION     KCLA01003152.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 269)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..269
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51324upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>269
                     /note="ultra-conserved element locus uce-1161"
BASE COUNT           88 a           51 c           44 g           86 t
ORIGIN      
        1 tcagggctca ggtttatgtg gctgccaccg ctgagtaaat gccttctagc catgataatt
       61 tcattctaat ctctgttcca tattataatt ttcatagcta aaagataccg aggagcaata
      121 cgtttcaatc aagggctaaa tagaacacaa cctgtaacgt ggtattttat acacctatat
      181 atattctctc tctctcaaaa aaaggtcaat ttatgaatag actgaaataa gctgtaaatt
      241 tatggatgac aaactctgtc tgtagcaat
//
LOCUS       KCLA01003153             217 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51340upu ultra-conserved element locus uce-7056,
            sequence.
ACCESSION   KCLA01003153
VERSION     KCLA01003153.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 217)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 217)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..217
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51340upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>217
                     /note="ultra-conserved element locus uce-7056"
BASE COUNT           74 a           49 c           36 g           58 t
ORIGIN      
        1 ctgccatctc attttaaaac tagcagaaca actcgagtga agcaattccg actttttcca
       61 tctgtgcaca gttaattaag agggtaatga gagctccgaa tgaacaagcc ccgcattaat
      121 tcaagatatg attaagggaa acatcccaaa atgaaaaata tatatgtgcc tacacacata
      181 cattgaaaga gtcccttttg tctgtctctc aactcgc
//
LOCUS       KCLA01003154            1034 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51355upu ultra-conserved element locus uce-5012,
            sequence.
ACCESSION   KCLA01003154
VERSION     KCLA01003154.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1034)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1034)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1034
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51355upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1034
                     /note="ultra-conserved element locus uce-5012"
BASE COUNT          311 a          166 c          195 g          362 t
ORIGIN      
        1 aattgaaatt ttcaaaccag cagtttactt taatcaggaa acaactataa ttttctatta
       61 aaactgctgt caattcaaaa taatcttatg aaatattttt aagagaccag atgctacatc
      121 ttttaatcca tttgaatgtt ctatttaatt ccttttctgg aataaggtag tcttttcgtt
      181 ggggcataat acttattata tatagaatta atatttatga actatatctt tttgttgact
      241 gaatgaaaaa aaaagtatat tccatgcatt tccaaagacc ttttaagtga ctcaacaaag
      301 tgtataatgc aggccttgtc ttacatgtct gtgatgatac agtttaatag tgttataagg
      361 ctatggtggt gtgtagttgc tatgatggta gattgtgctg gtctgtatag atttactgtc
      421 attctttagt cttttcatac atgacagagg ttgtctgaag cgcagcagga acatgaagct
      481 tgcaggggtt aagtgttact tgcctcctgg cttgctacat agtcctctct gcacacatac
      541 agagatgagg tacagggtac atccgtcact gggccaatga catgatggat tactcatgtc
      601 attgccagta cagtcaaaat cactctgctg ccgataaggt ggtccctttt ctttactctg
      661 cttgagtgaa gctattttac cctctagttt taaaattcta gtgctcacaa acattcctta
      721 aagcaaagat ggaaaagatt atttttaatt ttatgtagta ggtgtgggcc ataggagata
      781 catttttgag aattactttc agaatggaca gatgcatatt aaatatttta catctcttga
      841 tttttctaat cctgcaaata aaatgtttta agaggggaac tgaatgtttt cctgaactca
      901 ttcttcctca tgatttatca gagaggctca ggtttgagct gctggacaat ttcccaatcc
      961 ttcttctatg tagagcataa acactggaaa agaatgaagc actggaaatt ggaaggaatt
     1021 ttgaaatgtt tgga
//
LOCUS       KCLA01003155            1094 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51371upu ultra-conserved element locus uce-4523,
            sequence.
ACCESSION   KCLA01003155
VERSION     KCLA01003155.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1094)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1094
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51371upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1094
                     /note="ultra-conserved element locus uce-4523"
BASE COUNT          329 a          203 c          199 g          363 t
ORIGIN      
        1 acagaggtat cctgcgatct gcacctatac ctgagggact acctaccttt tcaggcctcc
       61 ctccctagac tgtaaaccaa gccctaatca caggcacatc aactcatgca gctaacacac
      121 ttcgatataa atctttggta taatttacat tgaataagaa cggatcaata tttgagtttt
      181 atcagtttgg ctccaattcc ctgaaatgta aagttttttt ttaggatcaa acaagtaaag
      241 aacacactcg agtgcagaac agacttgttg gacgaagagc tgaaaaaaat taaatagaag
      301 ttttgggttg acataatcca ggttaaatct aaaaaagaaa aatacttact tttgcaaaat
      361 gagaggctat tttatcactc agagaatgtc acatcaattg taaagccatc agcctcaagg
      421 cttgttggtg attgcttcat atttactgtt agtccggcaa tggagatggt acttttacag
      481 tctttggaca gactagtgag tgtgacattt aaagtgttga tttttgcagc acttatgtta
      541 attgttgtaa ttttcctgat gaaccaccat tctggttccc tgatgcagcc aagatagttt
      601 tacattttct atgcaggcct ctttgccatt tggtctgtgt agtgtcagct tcgagtgcta
      661 ctgaaagcag acaaaattgc aagcaaattg catcagattg ccaacattgt gaaaaggtaa
      721 attgcttgca aatctattta aaccactgcc ctattttcat cagcttcagt acttggtatt
      781 catgattgct taattggcga cctttcctat tgtgtagtgc tttatggtgt aatggaaagc
      841 gatctttacc aaaccaatta cccttttttt ctcagcacta cattattgct gtgattgcaa
      901 ctgccagtcc tttgtaaatg aactttctga tttcaatgat gtttttaaaa tgtaagatag
      961 aaaaaagtgg cattcatatt gtgtgatgtt ctattttgaa gcctctttgt agtcaccatt
     1021 gtctgggaaa atggactgaa gggttacaca gtacctacaa atatccatgt aactattatt
     1081 aatattatca taat
//
LOCUS       KCLA01003156             586 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51386upu ultra-conserved element locus uce-3695,
            sequence.
ACCESSION   KCLA01003156
VERSION     KCLA01003156.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 586)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..586
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51386upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>586
                     /note="ultra-conserved element locus uce-3695"
BASE COUNT          216 a           92 c          110 g          168 t
ORIGIN      
        1 aaaggatgcc ttgcgttaga acttctccaa gctacgcaaa atactcggtg ttgatgccaa
       61 accaaaccat gaagtttgtg aatattcaag tgagtggtgt tattgagcaa agcaaatcta
      121 taatctgagt aaatattacc cagtattatt aaaaagcttt aaaaaaaaga aagcaaaaaa
      181 attgcgctag acttaattaa ggcttcaagt aaagcttgct tttattggca atttttttgt
      241 tgcaacaaga aaactaaaaa ttaagaggat ggttggcagc aatattgata tgctaatgga
      301 taaacatgct aatttagaaa aaaactaatc agcaaagaca ttactaatgg aaatgtactg
      361 gaaaatggct aatgctgtat acagacctgg tgtctacaaa atgaggaaga aatcattttg
      421 gttttataat tgtaacttga aagctaagca ttgatcttta ctctgctttg ttttagttag
      481 tattgaaaga taatgcaggt gacctgacct ggtacaaaga cacctcaaca tcacagagca
      541 ttacggattg gaagcgatct caagagatca tcagtccaat ccccct
//
LOCUS       KCLA01003157             594 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51401upu ultra-conserved element locus uce-4039,
            sequence.
ACCESSION   KCLA01003157
VERSION     KCLA01003157.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 594)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..594
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51401upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>594
                     /note="ultra-conserved element locus uce-4039"
BASE COUNT          195 a           94 c           93 g          212 t
ORIGIN      
        1 gtgactgttg ctaaaagact ctttcatcac tcttgtgttt aaacaacaat agttactaaa
       61 taagtctgat cagcagtaaa gataaagtga taaggtgcta agaatgactt ctaaaatagt
      121 atttgaagca catttcatat tgatgtgttt tgctgcaatt tgggtcatgt tcctctgctc
      181 agggttgtta gcagaatgat gggcagacca ttgcttttac tttcaaatac aacattgata
      241 gccggattta catttctttt taagactcag cttttgcaaa caagccttag atttcagaca
      301 taattctgtt attcaaatgg gagaagagtt tgatagctat gctaatcact tttatctgag
      361 aaaacataac taatagcttg gtttacattt gcctgcattt atgagcataa ttttagcaca
      421 taattttatt gcactataaa acataatact gcattagtct gctttaaaaa aaaagtcacc
      481 tttgagtgat ttgctcttaa accatcacac tatatttaaa taacagtata attttaaaat
      541 gttgaccttt taaactttga taacaatcaa ttctgcaagg ctattttctg taga
//
LOCUS       KCLA01003158             730 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51417upu ultra-conserved element locus uce-1193,
            sequence.
ACCESSION   KCLA01003158
VERSION     KCLA01003158.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 730)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..730
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51417upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>730
                     /note="ultra-conserved element locus uce-1193"
BASE COUNT          217 a          134 c          137 g          242 t
ORIGIN      
        1 caaagacaca tttgtcccct acccaatgtt tttgcaattt caagctgatc agtaggaagt
       61 ggacttagaa gtactctaaa ttatttcaca tctattggta atctagccag cgtgtacctc
      121 ctgtacccta agtgctgata ttttttttta aaagcacaag aggaagagca aagaattttt
      181 ttattctaag tcattctgta atttacacat ttttgtatca acccacttac tagtgccata
      241 cataagtgtt tcctctgaac agatttaatt tttaattttc ctgaatcagt gttaaccagg
      301 aaaaaggtaa ttgttgtcaa gagtattcaa actgtcagaa tatcattcaa tctaaaagct
      361 gttagaatct gtgcaaaagt aattactgaa actctattca actgtaataa taacctgcca
      421 ctgatgacag caattactgg ggaaagtgta atagaaatca aaggcgcatt tttctctgac
      481 aagtacattt ctaactaagg tttacattgg ttgaatagtg ttgacaatga tgatgtgctg
      541 tatcactctt aatcacggtt ggcatgatgc tacagtttga actgctcgct gcttgaggag
      601 gactaattgc atgtttcatt tgacactggc cacgctttcc tcatggaggg atctatatta
      661 gagctgagca gggtttaagt gttgtgcctc actgcctgac tcacagcctt tttaagtgca
      721 ggttgcaagt
//
LOCUS       KCLA01003159             626 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51432upu ultra-conserved element locus uce-4436,
            sequence.
ACCESSION   KCLA01003159
VERSION     KCLA01003159.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 626)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..626
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51432upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>626
                     /note="ultra-conserved element locus uce-4436"
BASE COUNT          173 a          114 c          176 g          163 t
ORIGIN      
        1 gctaccttct tcaggtaggg ctgatcttcc ctctgtggga tggcggcaca tgagctgtgc
       61 gacgtgtgcc aacacttgag taccaagtaa ggagcatttc cagcaaatgc actctaacag
      121 gaattgcctt ccctgcagtt tcagctttac ttaataaaca tttttgtctg aatgagagag
      181 aagatgaatt tttcctcttt cctcctttct gctttgctgg tcagagggaa acgtcagtgg
      241 aaatgctgca gaagcatctt ttggacatat tgacaggtac aaggtgagct cagaccttat
      301 tgtgttcctg agcagggact ggatttggga tttgagtgga tttaagcaga gtgggggttg
      361 tagaaatgga tataaaagaa ctctccttta cctgattgtt acaagcaaca atgatgtgct
      421 caggttctgg cattatgctg cttttctggg ccacgagggt gtctttggta tgtcctggaa
      481 gacgatagga agaaaagagt ccatagtatt gcttcataca gagaggggga ccagacagct
      541 gtccacgagc aaaatcaaca ggtaaagcat ggctggagag agagaaggag aaaaacaaag
      601 ccagaggaaa aaggggggat gggggg
//
LOCUS       KCLA01003160             652 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51448upu ultra-conserved element locus uce-2031,
            sequence.
ACCESSION   KCLA01003160
VERSION     KCLA01003160.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 652)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..652
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51448upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>652
                     /note="ultra-conserved element locus uce-2031"
BASE COUNT          186 a          176 c          137 g          153 t
ORIGIN      
        1 gtctaacctg cgcaacagag ctacactgaa agctgggaag attaatccaa cttagggagc
       61 tttccaccaa ccccaaaccc tttgagctgc taccagtgcc tcttggggac agggagggct
      121 gaccactagt attgaaatat cctccagaat gaagaaaaca gaacaaagca acttttattt
      181 tgaaagagag acaatagcca caaatgcagg atgaatagct attgccactg taacagcagc
      241 taagcgaatg catgtctgca gtgtgagcag ttttgataaa cagcctctgc gggccacaca
      301 acggggataa tgtatcctta agtactgcca atgagctgcc attctgcaca gccaattact
      361 tctgtgcgtc tgtcactcaa aggaaaaatg actgagccca ttagatcaaa cctttgtcac
      421 tgttcctaat gcactcgtag gcctcattaa tctgagggag cagcaacaca gccgccggtg
      481 cctcattgcc tcccccacaa caggaccacg tgaatcttct catctctccc ccaagtgcac
      541 cacgttaatc aagctctcct tattaccccg gtccctgtca cggcggagag cgctctctct
      601 cttaaatgct ctcattatgg tccatcttta gagctggctg agtggaaaaa aa
//
LOCUS       KCLA01003161             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51463upu ultra-conserved element locus uce-2478,
            sequence.
ACCESSION   KCLA01003161
VERSION     KCLA01003161.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51463upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-2478"
BASE COUNT          227 a          129 c          123 g          189 t
ORIGIN      
        1 tatatataca catatacagg aagcattaac tcagaaaaat gattagtaat acaaaccaac
       61 ccttggctca ttgagtaaaa aagaaatcgt catgcaaacc atcagcaagc aaaggtcaga
      121 ggtcgttaga ggctcagaaa aggggtttcc cacattgtcc ctgcagcaga gtcacagttt
      181 ccaatgatca cttttgtgac tatgcaactg ggctcatatt actagctgca acatcacaaa
      241 aatgacactg gcaaccgcta attagctggc aaaataagaa tttgtccgtt tttaaagtga
      301 gcagtgttag taaatgccat tgcacacagc gagaagtgat agcataatag atatatattt
      361 taagcaaagc cctcacatat gatgctaatt atcttttagc ttagcagtcc ctctttaaag
      421 tgtaaatgtg ctccctctgg gctcaagaaa tatttaatta cacatatcag tgcatgacta
      481 acaagctagt ccagagcaat gataattggt ctattgttca aaatgaaatt agaactccag
      541 aagcattgaa aactgaccgg tagtttctat agcaggctca cctctcaggg actgtctttc
      601 gtatggattt ttagaatgca tagaataatc tcttttaggc aatttatacc tgcattatga
      661 aagtctga
//
LOCUS       KCLA01003162             893 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51478upu ultra-conserved element locus uce-1558,
            sequence.
ACCESSION   KCLA01003162
VERSION     KCLA01003162.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 893)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..893
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51478upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>893
                     /note="ultra-conserved element locus uce-1558"
BASE COUNT          274 a          192 c          178 g          249 t
ORIGIN      
        1 tgatttatgt gtaactatat atacacgtat gtatatatgt gctacagaaa ttacagcaca
       61 aatacctaca tatgctgtca gctttaaaca cattaagggt ctggaaatac tcaatatgtg
      121 agcattctac ttttaggtct gtgttattta aaattactga ggctggcttt tgccacataa
      181 ggcttttcac tcttaaaaaa ataataagtg taaatctgtt ttctcatgaa ctagtccttt
      241 atgagacaca taaggaaaca cagtgtggaa tgtcacaaaa ggaacaataa tcatagaatt
      301 agaaacaaaa gaatcagaca gaacaaagct tttttttaag attctacatc acacacaaaa
      361 catttgttct gctccagctc ttcgtgaact aattggctct cctggaggga caggtaattg
      421 tacttgacta cacaagctgt cctgaagctc ccttggaaag ctccagtaag cttccagtgt
      481 tagcagccat caaggatttc acaggtcagg catcggatcg atacagctaa aagcagcagg
      541 gactgtaatg tcgacagcag gtttcagaaa acgctgcaaa tgccagtttg ttccccttca
      601 tgcagaagct caagacagct taattaaccc ttggaaaata caattcatcc agaggctctg
      661 caggtctgta ctaggcctta ttggtgaact gatagcagag atactgtagc tggcagctct
      721 gaattcccat ttcccccttt aatgccgttt cagttaggat gcaaacaaac catgattttc
      781 ggtggctgtg ttcaccctgt cctgaagagc acactacagg aggccacaac agctccactt
      841 tgcttagaac ttgcctgtga tttcagcagg agcctgcccg gcaagggcat tga
//
LOCUS       KCLA01003163             964 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51494upu ultra-conserved element locus uce-7610,
            sequence.
ACCESSION   KCLA01003163
VERSION     KCLA01003163.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 964)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..964
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51494upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>964
                     /note="ultra-conserved element locus uce-7610"
BASE COUNT          291 a          185 c          209 g          279 t
ORIGIN      
        1 agaatccaca aagaatgctg cttcagctct gctctgattt ctaattagat tatgagtgat
       61 gtaggactct gaagccaagc tggagtttgt gctagcactt tgcatgtatg aatgacaaag
      121 ggacaccact ttcatattga tttaagcaag gcactggaag aatgtttaaa catcaagtgc
      181 ttgatgcccc ggtttgccgg agcacctgga aatatcaaat taattccagg tgttctacca
      241 ttaagacaag ctggctgctt ttacaaccac acacacaaaa tgtgactccc agttccacaa
      301 ataaaaccag aatgatttct gctcctaatg cctcgataac tctgacatgt tgcaagttct
      361 ggaaagaatt ttaatctacg tggagttaag ggggagggga agggggggga gggattttaa
      421 atatgctgca tacaatttgt gatggtcatc tctaaaatgc agctccatta tccttttcca
      481 tttggaatga atgaggctaa ttaatttcag gccatacttg atgaggtcag caccatacga
      541 agggtgcgtg ctagacattg ctaatctctt tcagctgaga gtgatgaatt aaagatgaag
      601 cattcctttg caggcctaat ttagaatgta tatcaaaaac ctacagcaaa taatactaca
      661 ccctacaaca aaggaaaact tgttctctca ggctcccatg tagggttgat tttaaaggca
      721 ttttcatttc actttggaat tccagctgtg gatgggtgaa acagttcaga aaattcaagc
      781 tttctctttt tctattgctt ttatggacaa aagtaggcaa gggggggcta aggggagaga
      841 gaaactagtc actgtttgat cctgtgattc cgactgtaca ctcaacattt aggaaagctg
      901 ccaaggtctt atactcccca agtacctgtg atacaacacg atgcacatgg aaattttatt
      961 gttg
//
LOCUS       KCLA01003164             989 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51510upu ultra-conserved element locus uce-1601,
            sequence.
ACCESSION   KCLA01003164
VERSION     KCLA01003164.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 989)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..989
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51510upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>989
                     /note="ultra-conserved element locus uce-1601"
BASE COUNT          225 a          255 c          215 g          294 t
ORIGIN      
        1 gaacatgggt ggcagcacag agtactcctg aggagtcatc cctgagatcc ccacccagag
       61 tttggtatca ttacacggcc tagatcttgt ccacctctga ggaaaatcag actaacagaa
      121 agacagtaaa atgactgtaa agtgtagctg ctttcagccc tcagtgctca ggcctttgtt
      181 gccccacatc agtaaggtag attatacttg caaaatggct tggacctcag tccttgcttt
      241 tctcagggca tgcgtgtgct tggtccagag ctggcagcat cttcctgatg gctggtgcac
      301 acattctgtg ccctcttcac tcttcctatt cctaggggct tggagagcag tatgccagct
      361 ctgtgtgccc agtgtagccc ttgtgctttc ctcttcctcc agctctcatc cttactgtgc
      421 tattaagtta ttgccacccc tcagggacaa gccttcaaga aggcggaggg ctcacataac
      481 ttgggatcag taaaggaagc agctcaatta gcatttcaca cgccttttct ttcctctctt
      541 cttaccttcc ctgcagcggg catgctttcc ccttaaagga ttgtcctgtt tctgctcctt
      601 gccagcgttg gcagggtgac agtagtcgag tgtgcaaact tgtgctattg tccccaggcc
      661 agggggagtc atggagaccc actaatatga cacaggaaaa tgtttgctga tggcaattct
      721 atgggctttg tctaactctt tctccatcat gacgactcga tttaagtctc taactgtttg
      781 actacagatg caagagtact atccaactcc atccttttgt ctgggtagtt tgaatgggta
      841 attcagcttt tgtgtaactc aattgagggg gcaaacataa agacaagatt cttgagcgct
      901 caagctccct ttccatggat atctgcacat ctctttagag atttgttcct ttcctacctt
      961 tttctgacat catcctcccc ttaaaaaaa
//
LOCUS       KCLA01003165            1283 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51540upu ultra-conserved element locus uce-61,
            sequence.
ACCESSION   KCLA01003165
VERSION     KCLA01003165.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1283)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1283)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1283
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51540upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1283
                     /note="ultra-conserved element locus uce-61"
BASE COUNT          404 a          277 c          224 g          378 t
ORIGIN      
        1 tacaggccat tgttgaggac tggtgatttt aaagaacttt aaatatttcc agatccattt
       61 ttctttttgt aaataaatga aaatgatctc tggagcaata cgttggcctt tcaaaggact
      121 taaattgaaa aggaagtaat atttactaat atttcccctt cagattagaa aagcaaactt
      181 ttcagtagag ccatgtgttt ctacccccat ccttctcaga gctgtggtta ttttttcttt
      241 ttctctaaag tatctgctca gagattgtcc ggtaagagca ctttattaga tcatcagtca
      301 gagggttttc caagcaccaa gagctatggg ctcaaacgca gcacatcagt tttaatagcc
      361 gacggtctaa tagtaaagcg cagacactgc tgagaacttt ccatgcagtg aactcttgaa
      421 aaagcaccat ctctcaagct taaatgcagc tgcctctttc aatgccgcaa atgggtaaat
      481 ttgacaaaaa agccaccatt aagactacat gaaaggctca agacaacatc ctttcaatgc
      541 tttgtacttc agtaatcaga tgtacttact caccccctcc cccaaacccg atcaagaact
      601 atttctgaat ggtaggaaat aattccactt tgtacatctt ttagttaatc aagactttct
      661 attcagcaat ttgacctttt gttcaaaaca ggattatcag ttttttcgcc agttaccaag
      721 ggcgactcgc atggtgaaca taattgcaat aatttgcaaa acaccatggc aacccacatt
      781 acaactaggt aaatactggt cttttgtgct acattgttat ttccagagat gctgaagtca
      841 aagaacgaat gacaaatgaa cacaaaattt atatttgctt tgtctcaaaa gagaagaaaa
      901 ttgataacaa gaattggggg gaaaccgact acagctgtaa tttctaactt gattaattag
      961 gatggtaaca gtccttaaca gcatattcaa caaacagccc tgacttagtc tctccaccca
     1021 cctctctctc tctccgctac taccactaac ccccacctca gacaaatttt ttcagctagg
     1081 agaacaaaca actccatttg ctcttttctt caacttaatg gaatccttaa ttacagaata
     1141 ttgttccccg ctcttcatta cgctgaaaac tgaaagtgag agagaggagg aggaagacag
     1201 tgccaagcag acagggtggc tacagtcatc ttcgcttgtt ttgtgtccag cagaactaaa
     1261 gatgagatgg cattttgggg tat
//
LOCUS       KCLA01003166             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51556upu ultra-conserved element locus uce-7105,
            sequence.
ACCESSION   KCLA01003166
VERSION     KCLA01003166.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51556upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-7105"
BASE COUNT          182 a          126 c          164 g          218 t
ORIGIN      
        1 ccccccaact tcccattttt ccatcctgtt aacactgctg cctgtgccca gacagtaatg
       61 ggcttcttgt atgcccacga ctgttatgat catgtaaatt tattggtgct tagaagaagc
      121 gagctattaa aacattacaa caaccattac agccaggctc gtgttggctt tcgctcccaa
      181 tgaacatatg cttccgagtg aatgcctaaa ctcttattta tggatttaat ttaatatgcg
      241 gaaagaattc aaaattaaat tttgtgtctg cctccagaga gtgtcagtgt ataataacat
      301 ggtaattttt acacatcttt atgagaaatg ggaaaattaa ttctttctga caagttgtaa
      361 ttattcgact tggaacagtt gcagctgagc agtttgcatg cctgttgtct gttgttgcac
      421 agtgtaaggg gaaaatgtgg ggatggagat atattgtatg gctgagagtt tctaatagct
      481 tctgacattt tagccctgcg tattgtcagg gtgctcttta aaggagaggg gagcgtaatc
      541 tgctgcagag ttggggacac acatgcagca gcagacctgc tgccagtggt agggtgggaa
      601 ttgtttcggt cgggctgagg ctgaggaagg agctctctcc attactttgc aaatggttaa
      661 agctgaaatt gaattaacgt tctttgtatt
//
LOCUS       KCLA01003167            1020 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51572upu ultra-conserved element locus uce-5404,
            sequence.
ACCESSION   KCLA01003167
VERSION     KCLA01003167.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1020)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1020)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1020
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51572upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1020
                     /note="ultra-conserved element locus uce-5404"
BASE COUNT          260 a          246 c          216 g          298 t
ORIGIN      
        1 gttcttctca cacacatttg gttgtcctcc tgttctcaac tcccctccca gcccctttct
       61 ccccactaaa agtcccatgc ctccttgtca acgttaaagt aagaagagca cagccatgga
      121 aaagagcaaa aaagacactt tccatccttc cagctccctg ctgctctctt ctccctcatc
      181 tctcccctca aaggagctgc aactattcct ctgcaccaca aaaaagacct gccaaagtgt
      241 ctgagacaga aagggttaaa ctcagcagag catcagctcc aacacagtta atccatataa
      301 agctcatgga tttctctaca gtgatctttg tggttgtcat ttgcattttt ttctttttgt
      361 gaaatctttt cttcttccct tttacactcg tctgcatgca gaaattagca tattgtaccg
      421 agagcgggag atgtaagaaa ccgaccccct gctgctcggt ggattgtgca atctgcaggc
      481 ggcatcaatt tttcagcagt ttcctcattt ctcattacag tcagggcacc gtgcagctcc
      541 ccattcaacc caatccctcg tggtcctaca gacaagcata tgggctgtgc aaaagctggg
      601 ctgccagttt cacagtgtta atatccttgt ttatgctccc actgtaatta atctgggtat
      661 taatatagtt tgggcttagc tttactaatt atgtataggc tagcgggata attatgtcag
      721 cagactctgg cactggtact tgacagcact ttgctaacct tagatgcagc acagagatgc
      781 tttggctgat cctgctttgg aaagggggaa atgaagagat gaggaggagg gtggctgcag
      841 agagccgatg tctggtaact ataaatagtg ggtttaaaac agggacattt tgcaggcaca
      901 ataaagttgt cctcgggtat caaactctgg ttgtcatagt gatgtgtgca ttattaagag
      961 ggtgttgttc atgctgccat ctaaccttat aatgagaatg gctcattatc ggcctgacga
//
LOCUS       KCLA01003168             888 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51588upu ultra-conserved element locus uce-6748,
            sequence.
ACCESSION   KCLA01003168
VERSION     KCLA01003168.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 888)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..888
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51588upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>888
                     /note="ultra-conserved element locus uce-6748"
BASE COUNT          268 a          165 c          181 g          274 t
ORIGIN      
        1 aatggcatct gtgtcttcca aagctgtgcc gctcaggccc tgccccttgg catctgctca
       61 gtcaagctga cttcttcttt cctttaggta cctgtgtctg ctggtggatg gcgcaacaag
      121 ccatgcagat gctgggcaga aacttagtgc tatgatcaag caactgtaag aacacgagtg
      181 ggtctgtagg ggcagtttct caagaaggtg gtatcagaca acgttatgat ctaataaact
      241 ttatttttta aaaatgacca tttttccatt gtctttccta ggaaattaaa ccctttaatt
      301 cttacctacc ctctacataa tggttattga gtactccaca atatattaag tctagatgtt
      361 atggtacatg catacacttt caggctgttg attacccact gtcaccaata cacataaatg
      421 gaaaaaagct atgaaactgg atagggctgt atacatactt gtctcagctt cattagagca
      481 ggaaactgct gtgatttcca gcaggttacg taagtaatgt ccagactgtt caaaaaaaac
      541 tatgaacaga gtaaagtaca agactgtttt gaggagactt tctactgcgt actttaaaac
      601 atagtaaaat ttctttcaca aaatttagtt acatgggtac tttgttttat agtgcattat
      661 agtctaggaa gtctcattaa aacactcgct tttctttgtt agggtggttt gagtagagac
      721 tattgctggg gcggggaagg agattattct aacttcagag aacaccagaa aaattgctgg
      781 atataattta agattagtgt tttctctttc atagaaagaa cgtacatact gggacatgag
      841 tacagttaca gcaagtctag gtgtgctaac aaaacaggac acattcaa
//
LOCUS       KCLA01003169             838 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51604upu ultra-conserved element locus uce-7100,
            sequence.
ACCESSION   KCLA01003169
VERSION     KCLA01003169.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 838)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..838
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51604upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>838
                     /note="ultra-conserved element locus uce-7100"
BASE COUNT          252 a          169 c          148 g          269 t
ORIGIN      
        1 ctttattaag agctgaggga aaggcaacag aacaaggcat tctgagcaca tctgggagtc
       61 taataacaag tctgatccat gtggtgatct gaccagcaat ggggtctaag aagatctgga
      121 tatttttgca atagcacagc aggattaagt ctgtcacagt aatgtctggt gtatccagaa
      181 cacccatgtg caagcaccaa aatgacacca tccccttttt cttagttttt tccttatttt
      241 tttcttggta gaggaagatt cggaatcaac tcagtaaaaa gaattgtcat aaaatctcac
      301 accattgact tgtaaatgga attgaatctg tggagtctac ataatgatcc tatcaaaaag
      361 ggaagaagct atcacattca tataacagat gagatatgaa atgactacta tggcagatga
      421 acaccccaga ggtattttgc tttattctac tcactgcgtt tatatctcca gtttctctaa
      481 ttttagttat tttttcctca ggtctcaaga caagaacaga aatactttct tttctttctt
      541 tcttttttcc ttttttttaa caaataacct catacagaag tcaataatat aaatacttat
      601 gtttccaagg tcagtgcagg ggctttatta aaactgattt ttcacaatgt attcatctgc
      661 tgttacttct gctgttgctg ctagaaacct tccagtcatt tccccttccc tataaccgac
      721 atttgggttg ctgagaagtt aaagtacttg catcaggcag aggccaagta gtaatgggct
      781 caccttcctc actaaagaaa ttgtgctgct taggaaaatc agatgcaaac ccctcctc
//
LOCUS       KCLA01003170             299 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51619upu ultra-conserved element locus uce-930,
            sequence.
ACCESSION   KCLA01003170
VERSION     KCLA01003170.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 299)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..299
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51619upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>299
                     /note="ultra-conserved element locus uce-930"
BASE COUNT          100 a           57 c           63 g           79 t
ORIGIN      
        1 ccagcaacag gggaattagc cccccctcac agtagttttg actttgctgc ttgatgttta
       61 tatcactaga gaccaaagaa tatacttgcc agacaagaat aggaatcatt aagtctgtgg
      121 tccaaagtga ggcgctgaac catctcaaag agtgaagcgt ggtcaaagtt acagggattg
      181 gaagagataa attcatccat gccatgcttt tgagctctat ctgcatctgt tcatttatac
      241 atatagagaa agacaccatt tagagagata taagacattt tagtggacaa atacaacag
//
LOCUS       KCLA01003171             338 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51635upu ultra-conserved element locus uce-2111,
            sequence.
ACCESSION   KCLA01003171
VERSION     KCLA01003171.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 338)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..338
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51635upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>338
                     /note="ultra-conserved element locus uce-2111"
BASE COUNT          125 a           57 c           57 g           99 t
ORIGIN      
        1 ttgcatggca ccccatttac atattcaata ccagtgacaa tttacttctc ccatctaagc
       61 agggctttca actatgccac ttgaactaaa ttaataaaca gtaattagag aatgttgtgc
      121 gagcaagctg ttgatgttga gaagattcta atcaacacct tcttttaagg gccaattaaa
      181 gctgaatgta tgcaatataa acatcttctt gtatttagac atgaactggt gaacaaggta
      241 aaaataaaaa atgtgaacaa ttacagcaag ttagagctga tccaatgaat gatgaatctt
      301 cattaattgt gaaagcagca gtaatttcta aaaaacag
//
LOCUS       KCLA01003172             538 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51651upu ultra-conserved element locus uce-2043,
            sequence.
ACCESSION   KCLA01003172
VERSION     KCLA01003172.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 538)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..538
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51651upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>538
                     /note="ultra-conserved element locus uce-2043"
BASE COUNT          177 a           88 c           95 g          178 t
ORIGIN      
        1 tttaggttca aattaacatg aagacaagct ccttgagtca cctagtcttt ctctgcggaa
       61 tcctttctaa ttgaatgtta agatcaaagt ttaagtttat aagaaagaaa aacaagtgca
      121 gataaatagt tattatctga tatccttatg aaaattcatg acctgccact ttatcagaga
      181 ccttttaaga attttaattg tgaagtatgc ataactatta aatggcttga gcgcttcagt
      241 ctcttgataa gaagcgagtt aaataattgt cctgtttaac ttgtgcttgt taacctttaa
      301 ggtcaactag tttgaacata cgtttaatga aatcctggag ccagaattta tgatactgct
      361 gctgaatgtt aaattggaca atttacataa gcaggacatt aaccttctaa gcactaaata
      421 gcattttagc acttagccgc tggggacaat aagggacatg ttctatatat ttgtgattag
      481 cttgcctgga aactcatgat gaccaattgg cctaccaagt ttagcagcat aattaaat
//
LOCUS       KCLA01003173             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51666upu ultra-conserved element locus uce-2300,
            sequence.
ACCESSION   KCLA01003173
VERSION     KCLA01003173.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51666upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-2300"
BASE COUNT          194 a          129 c          108 g          209 t
ORIGIN      
        1 aattttcttt ccatctagat tcttagtttc tttatacact ggactcataa gcaaaagagc
       61 aaacatgaaa ttttattgat agccattagt gaaatctgtg cttaatgaca accgctttca
      121 tattcccttt catcacactt aaaatattgt ttcaatgtcc aactgaggta aaatggttct
      181 tttttcagtg cttactaaag tgacttcact gatggcaaca gactgaactg ccgttttgta
      241 aggcttttca acagccagac aaataaatag ctttttctct gctgtatggt ttgctgtttg
      301 cttaagcaaa aatccaattt ctggagaaga ctccacaagg ctaaattccc tgccatttac
      361 aagtgtccca tcagagtagc tttctatatg gaaataacat tccaagaaaa ggagagaaac
      421 agtaggtctg aggtccactg ctcctgatgt gttttattat ttctttttca tttgaagagc
      481 agagctgtga tcccatgaga aagaaagtaa tatctgaata caaatgtctc aagaaactcc
      541 tttaaaagtt aaatcctctt tcttgccttt tttttgaggt ttcccccccc ccgatacgca
      601 tcaagggcaa gaggagacct gacagttcag actatttaaa
//
LOCUS       KCLA01003174             704 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51682upu ultra-conserved element locus uce-5531,
            sequence.
ACCESSION   KCLA01003174
VERSION     KCLA01003174.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 704)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..704
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51682upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>704
                     /note="ultra-conserved element locus uce-5531"
BASE COUNT          209 a          129 c          153 g          213 t
ORIGIN      
        1 actccagatg cagttctact agtgcacatg aatatcttaa ttcatgacca tctggtgtcc
       61 agacaggagc agcctatatg agcaaaccac agcttcccta ggtcagctaa tgcagccatg
      121 ccgtgaagta gggaagagta cgcagaagtg aagaagcctt gaacacctct aaggaaactt
      181 tcagacaagg agggttccat ccttgcacca tgcatgccac agggccagtc gttgtatctg
      241 tttattcgtc agtgtttgtt aatggtaact ttcatttcat ttaggatttg atttgtttac
      301 gaactaataa atatgattta taaaaagagc ctgtggttca ctaattacgg cacatatggc
      361 gttttcattt tgtaaaactg gcgtttgctt tctattatga ttatgtctcc gttcaccagc
      421 gctaattagt ttgattagac agataacttg aaccattatt aggactagat gaggggaact
      481 ttgcatgcag gggaatgcag ggaagaaggg tgcgtcacca gtgaagatag gtcagcagca
      541 cagagttagt tcctcattaa atattggaaa attacttttt gttttgtttt gcgcagagaa
      601 gaaccgagaa gcgttcgcat ttagctactt acaaaaatcc aattaaacac agttgtttag
      661 catgaatttg ttaatcagag ttaatctttc caatgaatgc gtaa
//
LOCUS       KCLA01003175             897 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51697upu ultra-conserved element locus uce-5982,
            sequence.
ACCESSION   KCLA01003175
VERSION     KCLA01003175.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 897)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..897
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51697upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>897
                     /note="ultra-conserved element locus uce-5982"
BASE COUNT          276 a          196 c          175 g          250 t
ORIGIN      
        1 aagtgacttc agtaaataag cagcagacat ccatttgtat ttcactgcag ccaccaatca
       61 gtgactaata gtgacttaat agtgttactt ttgggactgt gagtttagaa tgcctgcttt
      121 ctagtgtgaa tatagtatga ggcaagacca catcatctac ttgagttcta ctttttctac
      181 taccaatcgc gagaagttgc aggtcacatg cacttgtttt agagcgctca aagaagggga
      241 tacactcacc tattaaaaat gccttaagat ttcttaggtt tcctaagctg ctttgagatg
      301 ccctccttcc tttaagaaac aaatatcagc aggtatcaga tgaatgcatg acaaccatct
      361 aaccagcctg cagatttagg aatccacatg taggctgaga agatgcctgc tcacacacgc
      421 acgcacacaa agagcacttt acgtgacact aaggcaacta cttgagtggc actgatttaa
      481 tgctcacttg cttgtttcac taggttttat cacagcttgg taaacaccct aaataaaaat
      541 gatagcatct gcagtgccac ttcaacactc agatagcaga cgtacaaacc aaggctgtgt
      601 cagccttcac acagaacatc cctactgcca gggagcacag agatagatct gcttgccttg
      661 gtgactcaga gctaagaaga gctcacagat tttctcatga aattgtgcag gactacccac
      721 gatttcagac tcaggtgcaa acactttcag agatgccttt actgaaaagg aattctataa
      781 gctaaaatgt gattcccatt ttcattttcc aggagagatc tgggatgtca atgatatgag
      841 tcatgcttgt tcttatttat ctcttgggag catatatcaa gatcaaaaga gaaacta
//
LOCUS       KCLA01003176             776 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51712upu ultra-conserved element locus uce-1417,
            sequence.
ACCESSION   KCLA01003176
VERSION     KCLA01003176.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 776)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..776
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51712upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>776
                     /note="ultra-conserved element locus uce-1417"
BASE COUNT          263 a          135 c          160 g          218 t
ORIGIN      
        1 ttaccgctgc gcagcctttg cgctactgca ggatcacagc gcatcatcag aagagcagaa
       61 tgctgcaatt caaacaaaga agaaaaaaga aaaaaaatga acaaccagga gagttagaag
      121 cttttactat taactatctc caattatttc ttaaaaaaaa tattttaatt tacttttact
      181 ttatttcttt gaaagaattt gtggctagaa taaatattct tacattactt gcttgtaatt
      241 aaatatttta agctgtttct gaagccacaa gacagaagat tcaggcatgg aggcaaatgg
      301 ttttgctgtg gcagttacaa acccgttacc atatttctca tcatgtgact tttcggtgcg
      361 ttccttgctg gaagaggagg aggaggtgtg tgtctgccct agatccaggc ctcgagctcc
      421 cttcagcgag gcaccttacg catggaatag gaggtttcac ccacctgaaa ccttctaaat
      481 acaatatcag tggtgaaaaa ccaaaaacaa gagagaaaat aaaacaagaa cattagtaag
      541 agttcaacaa agcaattgca tttttctgga tatgtcttaa cacatgggaa tgaggacaat
      601 ctgtctgtaa taagggaaac atgcagaagg gagagggtta atcagggcaa ttgcacatag
      661 cagggatttg tttgttttgt ttggaagaaa ggctctgaaa tatctacaaa gaaattaaat
      721 tttcattcaa actgtaagga atatgctggc ttgatctctc aaatggactg atgacc
//
LOCUS       KCLA01003177             648 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51742upu ultra-conserved element locus uce-511,
            sequence.
ACCESSION   KCLA01003177
VERSION     KCLA01003177.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 648)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..648
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51742upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>648
                     /note="ultra-conserved element locus uce-511"
BASE COUNT          203 a          107 c          145 g          193 t
ORIGIN      
        1 ttttatctat tagaaagatt tcttcagagc cataacttag atctctcact aaaatggagc
       61 aacaggaaga tataatggta tatttcattt atgaatgacc tataataaat tactatgaat
      121 tatttcaggt gccaaatgag agaatgcttt gtctgcacat gaactatatt tcacatactt
      181 taatttggct gacacataaa actcatttga cattttgcag gtatttcttt gaaaggatat
      241 ttggttcttg ttgagcgtta aggtatggag gtggggtaac ctgggtaaca caaggtcatt
      301 tccgagtaga ttgttgtcca agatcagctc ttccaagtaa ctgaatgttt tcagtccttc
      361 tagtgacctg caaatgacaa aagcaacagg aaaaatgata ctccactaaa tcagggaggc
      421 cattatgagc tgaaataaat attttaacct tccctttcag gagtgggaat agttttggtc
      481 tggacctgtc agaagagtga atgacaagca ttagtggcaa ggggagtgct ggcactgcaa
      541 catatccttc acatgctggc aggatgaagg atgggggtca cttagtgagt agccaggatc
      601 caaaacaaaa ggcttcagat atggggcctg caggatgaat ttgtcaat
//
LOCUS       KCLA01003178             943 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51756upu ultra-conserved element locus uce-2968,
            sequence.
ACCESSION   KCLA01003178
VERSION     KCLA01003178.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 943)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..943
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51756upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>943
                     /note="ultra-conserved element locus uce-2968"
BASE COUNT          218 a          251 c          250 g          224 t
ORIGIN      
        1 aacacacgtg ttggtgaggt aaactggggg tggtggagca ttcagaggaa ctgggacgtt
       61 ttgggtgcag gtcacccctg tgctggcagt gcattagtga gaagcagggc agatgaggtg
      121 catcggcaaa gcaatttagc acgagggcca cagactggaa taacgggtca gcgttgggct
      181 gcgtcgctgg agccgctaga atgatgccat tagggccatc ctgcaatgtg tgacggagcc
      241 gtgccgcccg cccaggctgc tctcagctct ccgtgccttt gcccagtggc ttgaagaggt
      301 tggtctctta tttcagtgca ttcactctcc caactacttt ttccatgtct gattaataaa
      361 tcatgaagtt tgcccaagac tctgtccgtc tccacccaaa tacaaacatt ccccattgcc
      421 gccaccttgc aagtggcaga gctgctccct ctgacaatca attaccctcc ggagatgaaa
      481 ttattgttta atggcttttg gaacaggctc ctgctctgac attcatcaca atcaataatg
      541 catcagcggg gacaaaagaa attacctgcc tcctgctaag tgaaagagtc catttgtatt
      601 ctgcacggcc ccttcacgcc caccgagccg gcagccgcgg gtggatcgcg ccgatggcac
      661 aagaggagcc tggctccaac tgaactctgg ccaagtttgc tgaaacttca ttgtctgggc
      721 tctcattagc agggctgggg tgagagctgg ggtttagggg atggaggatg tgggaagaag
      781 aattgcagaa tcgttttgta cccagcgctg ccaccctggt caggcagccc caggccacac
      841 atcagtgggg actccaccac tgccctgggg aatccattcc atgttcaagt taaatcccta
      901 catctctaat tcagtgatcc cttagatatc cactgctaag acc
//
LOCUS       KCLA01003179             668 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51771upu ultra-conserved element locus uce-487,
            sequence.
ACCESSION   KCLA01003179
VERSION     KCLA01003179.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 668)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..668
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51771upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>668
                     /note="ultra-conserved element locus uce-487"
BASE COUNT          234 a          112 c          112 g          210 t
ORIGIN      
        1 aaatattaaa gaaggtagaa tgaatggttt ttaaaaaata tgtttcccta gttgagtgca
       61 agtataagcg ctaactagta ttttgaatac ataccatgag atatcaaaca gcatgtgctt
      121 tctatttata ttggtaacca atctcaatat tcagaggaag agcgtataaa gttaacaagc
      181 aattatttgg caaattagta ctcaacaacc ctgagtaaat aggaagtttg aaacctatct
      241 gttatacagc tactttaatt tgcatagcac actggtgtgt ttgctttgca aatactttgc
      301 aatgaatcat catttgtact atacagtcca aagaaaagca atcaaaattc acagcaagac
      361 aatgaaatta attataactg ttgaattctg tggtggtaat tcctcctcat gcaggaagat
      421 taattgcatt gcactttcct tgcactccac taaatgatct gatgaatgta taatcattta
      481 cagatttctc aaatgctgaa aattgattac ctttgattag ctctgatctg cacaaagagc
      541 tctgacagag tatcagtgaa acattacaac attacagaca aagtaacaaa tgatttaatt
      601 accagtgtgc ttattaatgt tagattccct gcagtgatcc tggcaaatca ggggcctgta
      661 atagacct
//
LOCUS       KCLA01003180             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51787upu ultra-conserved element locus uce-2302,
            sequence.
ACCESSION   KCLA01003180
VERSION     KCLA01003180.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51787upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-2302"
BASE COUNT          285 a          155 c          161 g          276 t
ORIGIN      
        1 ccagtaaaaa cttgtgcaac tggacaaact atttgcttgc aaaaggttta taatctgttc
       61 aagaaataaa atgaaattag ccattctttt cttagcagat cacttctaca gaagtagacc
      121 tgttgggaca caaatacttc ttctgcacac gcaaatagat gttatcattt aatttctacc
      181 tcaaaatagg ataaagtatt ttcttccaca catacctcag tgctacgtgg gatttctatt
      241 cataaaactg cctccttggt caaagatcaa aaattagtga gggtccacaa catgcagagc
      301 tttaaaaaat gtcacattct ttcattttca gcataagaaa tgggcaactt gttcagggca
      361 aatacttgtt tgaactgagg attttattat taatctctga agactgctga atttagggtc
      421 acagtaaggg ttgattaggt acaaggtgca caaagctctc ctctgtcaat gctattgaat
      481 gaagcaagta atttagattc agaattggtc ttggattgaa gctcactcca ttaccgacca
      541 ttttcaattt cagctataca ataaacatca agctcagcaa ggaaattagt acatttggta
      601 atgtattggg agagatgggt gggtctttga caagatgaca cttatcacca aagcttcagt
      661 taatgaaacc cttgagtggt ttcctcgttt gacatatttt gacatttttt gaaatcacat
      721 ccagcgggtc tttttacccc acaatgttct tctttatgag aaaaaaaaat ccatctatct
      781 ttaaaatgag tactgaagta ctgcaatatt attggaaaaa attagagaga tgctgactgc
      841 attgaaggcg ggggagaaga gaatctgact ttcttta
//
LOCUS       KCLA01003181             723 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51803upu ultra-conserved element locus uce-5766,
            sequence.
ACCESSION   KCLA01003181
VERSION     KCLA01003181.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 723)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..723
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51803upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>723
                     /note="ultra-conserved element locus uce-5766"
BASE COUNT          201 a          154 c          158 g          210 t
ORIGIN      
        1 ataccaagac actcatgaaa aaacagggaa aggaaaatag tgctagatac agaattttta
       61 gcataaatgg ggaaatccag catttaatac tcagcacaag gttcatttgc agccatataa
      121 tggctgtcag ctaatgcctg ataaaccctg cctgaatggg aattttatga tatctggttt
      181 attatctatc tgcttttatt ccgaccaaag ttggacaaac ttgtccaaaa gactaggggt
      241 ccgttttatg tgcctgggtg tccaagcacc tgccagctgt ttgtcccttg aattgaggac
      301 atcatgtttt caatttcctt caataaagcg atgaatctgg caatttgctg gcctgcttca
      361 gctaaacaga aaggacaatt tgagaaagat catagttcag gctcagtcag acggaaacga
      421 ttgaaaacag cgagctggcc gctatgtttc cccgatgcag cttgctgtcg caatttgact
      481 gacaaactga cttttttgag gtgctcatgc ccatttcagt cagagtttat tgaaggtgat
      541 tttgatcttc tccatgaggc cacagcagtg gccatgccat ctgtcacctt gattgcatcg
      601 tggattctct ggagagagtg cgatggctcc tgatcattta cagattgtgc tgctttcgcc
      661 tccataagga ccacatgcac agagccagat ggtgaacata cacgcttatt ataagtcttt
      721 atc
//
LOCUS       KCLA01003182             750 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51819upu ultra-conserved element locus uce-1816,
            sequence.
ACCESSION   KCLA01003182
VERSION     KCLA01003182.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 750)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..750
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51819upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>750
                     /note="ultra-conserved element locus uce-1816"
BASE COUNT          155 a          217 c          178 g          200 t
ORIGIN      
        1 tttgctgctg gtgactgcct ctgcctcccc tgtgagagga aagagagagc aacaaggtcc
       61 tggtccgtgg ggctctcaat cctcaaaatg gattttacct gtctctgaaa gctgcctcca
      121 tctctcaccc cccactgctc tctccccagg gaaatcagtc taaaaggggc taatggaaca
      181 atgtccctct ctctcccccc tctcattttc tctctctttt tttttttatt agcatttgtg
      241 gaatttattc ccaaactctc ctaatctttc gtacacaacc atttgatttg cataacccag
      301 ccccctctca taaaaactgg ctgctagttt aattaaaaaa tgtaaatttg ctgtcatctc
      361 ggggcctggt gaattaggac gacatcggca ttttttattg ctgaagacgt ccaaattgat
      421 ccagtccgct ctgaaccgga ggggaggaga tgctgccgcg tgggactttt ggctggaggt
      481 tctgcccctc ccctgcttcc agccaagtct cctctgcccc ctccatgctt tgccaagtgc
      541 agccgaggac ggtggctctc ccaaactcta gagtggcctc tgcgatgtca gcactcgtgg
      601 gagctgagcc tgggtggcac ctgagctccc caatccctgg gaacggctgc agctctcaag
      661 cctgggaggg agggcaggag cccgagtgga ggtgggggat gcagcaaagg caatagctgt
      721 cttcacctcc cacaggactt ttcactactt
//
LOCUS       KCLA01003183             886 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51835upu ultra-conserved element locus uce-5638,
            sequence.
ACCESSION   KCLA01003183
VERSION     KCLA01003183.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 886)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..886
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51835upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>886
                     /note="ultra-conserved element locus uce-5638"
BASE COUNT          279 a          157 c          176 g          274 t
ORIGIN      
        1 aactgagaag tggaatcact ttagggaaat ctcacaaaca ctcacacaag gcaatgttac
       61 tgagtcatga aactatccaa aaacaggaaa aaagattgtg taacttcaaa cccagccttt
      121 tagtttattc aaatgaagga ccctcaaatg gtttagttag gaattaagtt aattgggttt
      181 ggtgtaaggt tggtgtactt cctgctggaa agtttcccat atttcctcag tgtaagtagt
      241 ggctggactc ccatgtcacc ctgttagtcc agactttaat tagttctggc attcacctca
      301 taatgataaa tgctgagatg atgaatggaa atgcaaatga gtgtgaagtg gctcagccat
      361 cagggctgaa tatcattaat aacttcctac tgttaaatca atcaatgtca tcccaggatc
      421 cctctgttca gcgggtgcag atggccatcc gccagaatgc cttccattat actggcagtg
      481 aaaactttgt gggtttttcc tccccatatg cttttattca tcttttgctg aatatttgtt
      541 tggcacctag aactctaata catttccagc tgagatgata actatttagg gtccataagc
      601 aagtagctaa tttagaacag aataaagatg aatatggatc tcttctcaca tcaggagagt
      661 atcataaagt gcagattcaa taaatttcag aggaatagaa attttcatga ttcaaaattt
      721 catgtagatg caatgaaaga agaaatagca tgcaaggatt tttctactgt cgagcacatt
      781 acatgtttct attttacaag tttctgggtc gggcagcaag tgcctagcac taagttttgt
      841 aagaattaaa gggttggata atgttcaaca tgaagcttta atatat
//
LOCUS       KCLA01003184             609 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51851upu ultra-conserved element locus uce-4778,
            sequence.
ACCESSION   KCLA01003184
VERSION     KCLA01003184.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 609)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..609
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51851upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>609
                     /note="ultra-conserved element locus uce-4778"
BASE COUNT          134 a          197 c          156 g          122 t
ORIGIN      
        1 ggcgggcgac cagccgcggc ggcgggggag cctgcccggg ggggtgcttg ccgagcgctc
       61 cggctgcgct ctgctctctc gcagccggct gacatctttc tgcaggttgc gtcggtccta
      121 tctgagcgat cagacaggcg ctgcgcgccg cacgcccagc aggatgatta tctcgagcag
      181 aggcccagag ctcattgtcg caggcatgta attctttaca atgtatgcca cgttaacggc
      241 gctgggttat ctattcaaca gctgactgag ccgggctctc cagctcctct caacaaccgt
      301 gtaagaagcg atgacaattg tactacttca taacggctgc atgcaactct gacacacact
      361 tcacggcaac cagtcatcta tataaaccaa tttcaagagc aaaattgcat ggtgcctcca
      421 ctctgttata aacacaatga tatccactca gagctgataa atgcactgcc gttcgacaga
      481 gctggaaaga acaacttccc cgcgcctgcc agctctccac ggcccccgcg ggctcttcac
      541 ggcccggctg ggcacagcat cacacagggt gatcccggct ggagatcccc cagtccaacc
      601 atccccacc
//
LOCUS       KCLA01003185            1106 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51866upu ultra-conserved element locus uce-7587,
            sequence.
ACCESSION   KCLA01003185
VERSION     KCLA01003185.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1106)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1106)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1106
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51866upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1106
                     /note="ultra-conserved element locus uce-7587"
BASE COUNT          242 a          279 c          306 g          279 t
ORIGIN      
        1 ttctgctggg tctgcacgta gctccgacac aagctgctga gtgtggggcc agagacgccc
       61 tggcagggga caatctttgc aggagtgacc ttcataagag ttctacttca tagctgtaag
      121 cagtcctggt ggtaacactc gtgcttacaa gcccctcaac tcctgaactg gggggataag
      181 acgggtcaaa caggcacctc tgctggtcaa gtctccttcc tcacaagatg ggttttctgt
      241 cagcctcagc aactgtcttg tattttctca tgtggatcaa ggtatttttg gataacctgg
      301 ggctggtgga gacagtctgg ttgtgctcag cattgccagg tgctgagatg tagcagagcc
      361 ccttagctca gggctcggag caggttcagc cttcagcagg gagggaaggg ctgtgcaggg
      421 gcttgtgcag ccactccttc ccctcagcaa atactgatgc ttcaggctct ctcttaaagg
      481 cctaattgga gcctaggtga ggagaagagc ctaatagaga tgtcgctgtg ctattagcac
      541 agatggttgt catatgtatg caaatgagga gcaaattgaa ttgggtgtcc cctctcccca
      601 gctgccctat cagtgctgtc tcctgcagca gccaaagcca ctgccactgc tctgctaatc
      661 tgtctttgca gattaattac aactaacaca ttaatcatca tttgtttctc gctacaaagg
      721 aagtatcttg ttctttcaag tgcattctgg tgggatgggg tggtccaacc tggggaaaga
      781 aaagagaaag gcaatgaggg ttgggcagca tcattagtgc cagtgcctgg ggctgcagga
      841 gccacactgg gacttgtggg ctccttctgg caagccagac cccactgggg gactgtgagc
      901 cccagccgcc tgcccagagc tcctgggaca tccactttgc tccatgatcc tgcctgggac
      961 acatgcttct ctgcttggct tcatcccaaa gcaatggtat cactcctttc ccaagctggc
     1021 agcttccaaa gggattgtta gtgttagcgc agaccttggc tgctcccaga tagcagctgt
     1081 aatgggtatg ctgggacagg gaggtc
//
LOCUS       KCLA01003186             579 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51882upu ultra-conserved element locus uce-2154,
            sequence.
ACCESSION   KCLA01003186
VERSION     KCLA01003186.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 579)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..579
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51882upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>579
                     /note="ultra-conserved element locus uce-2154"
BASE COUNT          166 a          145 c          104 g          164 t
ORIGIN      
        1 ttttacaggc agctcactac agccagcagc agcagcagag gctgctcccc gcaccgcagg
       61 gtaactcaga acccccgttt ggaaaccatg cctttttcct cctgactgca gcccgctgaa
      121 ccgtgaacac tctgcccatc aaattacagt gttgtctaat aaagggttta actttctgct
      181 catctggcgc tgctttccag cctctgcttt aaacctcggc atctgcattc cgctaacgcc
      241 gctgccatta cagccgcaaa taaattaggc tgatttactc cttctgaatt atgttctgtt
      301 tattgatgct tgtataattt aatttcacac aaattccatt aaagattatg ccctctatca
      361 caaaatgctt ccagtgggga aatataatca ggttataata gatttgtgtg ttacattaag
      421 atgacaatag tctggtaggt ccactgtaat aataaaccag aacacaaaca agggatgaaa
      481 tcaatgtcac gtaagaaccg ctgcccggct aactggcagc tcctattatc atagattaaa
      541 taaaaacctc gccgtacttt ttcagactga aacaattgt
//
LOCUS       KCLA01003187             905 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51897upu ultra-conserved element locus uce-2387,
            sequence.
ACCESSION   KCLA01003187
VERSION     KCLA01003187.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51897upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>905
                     /note="ultra-conserved element locus uce-2387"
BASE COUNT          248 a          193 c          194 g          270 t
ORIGIN      
        1 cagaatagag gaggaggatc acctccctca accttctggc cacacttctt ttgatgcagc
       61 ccaggatgtg gttgtctttt ggggctacaa gcaaacattg ttagcttatg tagagtttac
      121 ctagaccccc aggtccttct ccttacttac cgccctcaaa ggttccctct ctaagaagag
      181 atgtagttgc ttaggacgag aaggaggagc gttttggttt tgtgctgtat gtcaatctac
      241 cagcttggga agctcacaca tcacttgtgt cctctagtaa tgtgacttgt ctttatccag
      301 gtgcctagca aatcattgtc acataggcgc agtcgacctt tcttttcaat ccatgcactt
      361 ttcaggagtt ataaatcagt tgactttcaa gctcgatgag atggcatatg ccctggtttg
      421 aagaacagat ggaggcttgg gggaaaattg tttctgcagg cttgctacaa gcagcactgc
      481 tccataaaag cgaaccattc gcactaattt ctcacataaa ttatacaggc agggagcacc
      541 agcccattca gcagaaaatc tttcatctag ctttcagagg tcatttagca aatttaaatt
      601 aaagttattt ctgatacatg gctgggtttt cattccatac acttgcaaga gatggcaatt
      661 tacatcaaat gaaggaatgg ctttaattgt gtacgcaggg aaaaaggaag agtaaattaa
      721 ctgccacggt attactgttt tctagcatcc tggggtaagt tgcaactatt aattagccac
      781 agaggaatta ataattgaaa gatggcagcc ctttgctaca tgaatcgggt aaactgtcac
      841 tactttttgc aaggcctgct ctagtctcct gctgaacatt attccccaga ttcagtattg
      901 atgat
//
LOCUS       KCLA01003188             547 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51913upu ultra-conserved element locus uce-419,
            sequence.
ACCESSION   KCLA01003188
VERSION     KCLA01003188.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 547)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..547
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51913upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>547
                     /note="ultra-conserved element locus uce-419"
BASE COUNT          141 a          128 c          104 g          174 t
ORIGIN      
        1 taaaagaagc cttacactta tcctgcaaac gacagaaaga acttgtttgc aggattttta
       61 gagcattaaa gtaactatgt caggcagaag aatctttttt ctatcctagg atttcagcca
      121 tgcacactct gtctctctcc ccctctttct gtgtctttct tccctttctc tccctttctc
      181 tccctctctc tccctctctc tagcctgggg catgaatttg catgtctaat tcatttactc
      241 accatatttg aattggcctg aacagatgta aatcgggaag gatgggaaaa actgcagtca
      301 tcaacaatga ttaatcagct gttgcaggca gtgtcttaag gagactggta ggaggaagca
      361 tggaaacgga aaggcagtgt atttgaagcc taattgtcac atcggagcat ccttgtcccc
      421 gtgcaacaac caccaccttg tacatcactt cctgttttac acagctcgaa acacggactg
      481 aagacttttt tttaatatgt tgactttctt tctgggcaag acatgagtca tgtgtgcata
      541 gtttttt
//
LOCUS       KCLA01003189             931 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51929upu ultra-conserved element locus uce-183,
            sequence.
ACCESSION   KCLA01003189
VERSION     KCLA01003189.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 931)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 931)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..931
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51929upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>931
                     /note="ultra-conserved element locus uce-183"
BASE COUNT          291 a          187 c          191 g          262 t
ORIGIN      
        1 tacagccccg ctccgcctgg caatggcgag gagttgacat gtagaaaaac agctgaaatg
       61 aatacggatg aaatttgaaa gtgcaatttt ccatctgtca atcagctcct cgaggtagac
      121 cccagccacc acgcggggag acgcgaggtg aggtcatccc cgtctccagg cttccatttg
      181 atgggtcgcc cgggctcatt aatcaagatt ttaggcgctg ataaaagttt ggagcagagg
      241 tgctccggcc cgggtggccg caggactgtt tgattgtatt tttcaccctg ctatcgatgc
      301 tttatattcc gaattaaaat aaatagtctc cttctaaata gaatttgatt agatgactac
      361 aaaatctatt cctcttgtta tggcacctag cagatcattt cctagagcct gcctcagaag
      421 aaaatgtgtg gtatttccag cattaataat gtatggtcac caaaacccat tctggccata
      481 gcttcgagat gcttcaaaat acagccaatt aaggtttatt taattattaa ggttgaataa
      541 ataacagcga aacatgttaa aaatctttca gtttcagtca atcataataa aaaattaatg
      601 agactggata gagagccata aaaactgata gactgcaatc gtgaattata aattggtatt
      661 gattttttcc tttgcaataa cactctcagg taatcgtatg ttgccacatg taaagtgcac
      721 tttcctggtt gagactaata ttaactatca aatatatatg agatggaggc atttatgaca
      781 cttcggattt cacaaacaaa aagaaaaaaa atacaatttg tggaataata gcggcgctga
      841 acacagaatc ccagggtgtt tatgggagca gaaagggatc ccactgtgcc gcgaattcat
      901 aaggcacagt taccttattc ttctcctgcc a
//
LOCUS       KCLA01003190             482 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51945upu ultra-conserved element locus uce-2818,
            sequence.
ACCESSION   KCLA01003190
VERSION     KCLA01003190.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 482)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..482
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>482
                     /note="ultra-conserved element locus uce-2818"
BASE COUNT          112 a          119 c          111 g          140 t
ORIGIN      
        1 ggttgtttta ggatgagcct gggagctccc tgggccttct tcccactccc agtccccccc
       61 atactcccat cgcggagttg cagctgtgtt caccataaca ttttttgtct gtagtgtgtg
      121 atgatgaaat tgttaattgt gaatagaatc aggattctaa actaattttt aatgaaaaaa
      181 aagtatatac ttcaaaaatg tatttatggc tcagatgtac tgtaattcag atttattgta
      241 ccgcttcctt gatttttaac tatgcactgt aatgaggcac ttgccactca gcaaatgggg
      301 ggtcagagca gagtcacaga gctggcattc gcccatcggc catggatgca cctcgctggc
      361 cggtgaacca gggtgctcag cggtcaaggt cacccacatt gctgtcaaag ccattcttct
      421 cgctcgcgtg acttcagccc ccagcctggc tgggtctctg catccagatt ctgagcgttg
      481 ca
//
LOCUS       KCLA01003191             344 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51961upu ultra-conserved element locus uce-1742,
            sequence.
ACCESSION   KCLA01003191
VERSION     KCLA01003191.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 344)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..344
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51961upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>344
                     /note="ultra-conserved element locus uce-1742"
BASE COUNT           96 a           69 c           76 g          103 t
ORIGIN      
        1 cccccatcct tcccatcgta cgagagttac cttaaccaca aagctctgtc gtaccctttg
       61 cctgtcatgt ttaatcaggt tgttttaggt aatttttgtt atgcccctca ttactgaatt
      121 gtttatcaat aggtgcacca agtgtcacta gcttttctca tcaagccagg tctgacaaag
      181 agctgcagtg catgggaaag aggcagctag gtgaaactaa tgccatagat gtttgattca
      241 ttaggagctt attgttaacg gggatgtctg attgtaaagg ctcagtcaag caaaagagtg
      301 cagagtaatc agtcggattt atagtttgca gggctcaaaa aaaa
//
LOCUS       KCLA01003192             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51977upu ultra-conserved element locus uce-1909,
            sequence.
ACCESSION   KCLA01003192
VERSION     KCLA01003192.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51977upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-1909"
BASE COUNT          245 a          152 c          169 g          263 t
ORIGIN      
        1 aaatgaaaga ctgactcctg tttactttca aaatatttca tagctaaaat gcttactgca
       61 tttttaacgg tgacatactt cctttagctg gttgtggttt tgaagtaatg atataaaatt
      121 catttcatct ctttttcaag cctgactctt tcatacataa catcaggcat gtcatatctg
      181 aggaattatt aaaataagac gaagcctgct gtatctgagc agaaaagctt ctttgagctg
      241 gcatcctcag gagagaagca agctcaatct cattagttgg tgctgagaag gcgtcctagt
      301 cactaggttc aaggtgatga aagattaggg cgtttggcct cagctcattt tgtatgcagc
      361 tcacatcact ccctgcccgt gaacacgaaa ttacattgaa cctggggagt ctaactccat
      421 taattttaaa tggaagatta atttaacaat atgcggcaga tatttgttac aaacctatca
      481 tgtaaaagtg acggttagca ataaattgta gtgactcaca ctggccggtg gccctggctc
      541 aaataaatca gaaggcattt acacataatt gctgttttta aagacaggga tatgggagat
      601 atgtttcttt gatgaaagat cggctaactc cattcaagga aacagcagcc aatattaaag
      661 ctacagcgtc tctttggaag gagacgtttt gtttaagagc tggtaggatg gtaacgcaca
      721 gttattgtct ggctttcctt aacctatgct ttttctttcc ttcgataaat cgttttcatt
      781 gattttcatg cgagaacaat acagaaatgt tttacacgag gtgtgtgct
//
LOCUS       KCLA01003193             582 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 51991upu ultra-conserved element locus uce-4025,
            sequence.
ACCESSION   KCLA01003193
VERSION     KCLA01003193.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 582)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..582
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="51991upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>582
                     /note="ultra-conserved element locus uce-4025"
BASE COUNT          204 a          100 c          103 g          175 t
ORIGIN      
        1 gaagaaacat ctatttcatt atttcaaata gcttataaat gccttttaaa aattccatta
       61 tttgcacagc gtaaagaccc caatacccca tcacaattgt ttgacctgaa tatattaaaa
      121 acattgtaat gttttgttac atatcccaag gttaaaaatc aggctatgac ttattagttt
      181 tctcttccct gcttcttata aaggtttatt tgacagagca taagacagtg gtaaaatcct
      241 aaggtaaagg ttaaactctg ttttattatg tttacaggat ttaaagggta aatcaggaag
      301 tgcttattta acatcaagtg aaagtggtgg attagtaacc agaccgagac ttaaaagcat
      361 ccttaatcct taaaatctct gagggtgaaa ggtcactctt taacaccagg ttgtgtaaag
      421 aatgaagcag acagaagctt ctgtttcatc attgcccagt taatccactg aggaaatgag
      481 cagcattggt ttttgctagg taaactcctc ctaaaaccaa ggaaacagag gaaagcccga
      541 acaggaaata attaaagtag gtttattcca tgaacacaga ag
//
LOCUS       KCLA01003194             939 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52021upu ultra-conserved element locus uce-3959,
            sequence.
ACCESSION   KCLA01003194
VERSION     KCLA01003194.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 939)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..939
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52021upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>939
                     /note="ultra-conserved element locus uce-3959"
BASE COUNT          300 a          150 c          172 g          317 t
ORIGIN      
        1 atgtctggaa accaaagatt ttgaggatta tccagactta cttgtatttg ctatgttgat
       61 tcaagttgtt gatgtgtgat ctcctttatt acagcattag cacccgtgtc acagcgacat
      121 ttgaatttgc atataaacaa tcaacataat ggaatggaag tgtaaaattc agggattatt
      181 attgttttaa ataaaacgct tacctatcct gaaatgcaaa tatttattcc atgtgtgtat
      241 aattattata ttcccatgat agctgataat tttctgattc tctcgtttaa ctcatcttta
      301 tgctcttgca tccgcggtct ttgcaaacac tggacatctt agcgagctgt agtacagggt
      361 tttttgggtt taaccttcaa aggaatttag ttgagcagat gctacattga actagtcaga
      421 gtagaaagga aatgatatgg cttttaaagg gcacatctag catatctact gggctaaagt
      481 aattctggca atgcttcaaa ggatataact tttgatggta aagtaggtag gctacagaat
      541 gaaatcacat atggcaagct gtcaaagtct tcctacacat tcagtacatt tatataagtg
      601 caaatggatg ctgcttagat gaagtcccta gcaatttcct gttaaatctg ctctaagttt
      661 atctgatatt attgactaaa ttatctgtgt aaaagctgag gacaactttt atgataaaat
      721 atttagaaac aaattttggc agataatctg aaatacgaac tgcaattgta ttaacacttg
      781 aaagcaaagg gtttcggtaa tagcaattat atcaaaacag ggataatgaa ttgctgtata
      841 tcagcttgaa gaggacgtat ttataggtca atgatgtcaa tagctatagt tctcatagac
      901 acctcattct taccctttta ttccttgcta atgctaagc
//
LOCUS       KCLA01003195             697 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52037upu ultra-conserved element locus uce-7231,
            sequence.
ACCESSION   KCLA01003195
VERSION     KCLA01003195.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 697)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..697
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52037upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>697
                     /note="ultra-conserved element locus uce-7231"
BASE COUNT          180 a          147 c          174 g          196 t
ORIGIN      
        1 tcacttccac agtagggaag gacgaacgct ttgtcctccc tctcacccac cctatcaggt
       61 gccgtcaggc gcggcgatga aggcacaatg gcggtgccat gtgtggctgc ggacccgcgg
      121 tgttttatgt aatgcagatt tagaggtttc attgtgaagt cattttaaac tctgaactaa
      181 tgggtagttt ggcaacagcc cctaagtacg agattgttat taattccttt agcgccataa
      241 taacattgat ttagatgaac tcttataaca tagaaattgt atagtattta gctgtaatta
      301 acgtccccta attaggaagc gttgccaagt cgttttctct gctggctctg ttgtacttaa
      361 gtgcagctgg atgaaaatta accacaaagg gaacagcttg tgttttatgt gaagtttgcc
      421 tttgattgat taaaaaaatg ttcctcggta ctgtatttca ttgtcagaaa ggctgcactg
      481 gattatcgat gttacggaga gccaccaggt ccacatgctg caagctactc actcgctggg
      541 gggtgcggaa gccgaccgac ttagctgcac gtgcaggaaa ttcatgagct tgtgttgtcc
      601 cgacagcacc gtaataagaa gcaaatgatt cgcacgaggc ggtcgttagt gaaggctgca
      661 gagctttaag ccgaaggagc gtcatgtaat gtccact
//
LOCUS       KCLA01003196             984 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52051upu ultra-conserved element locus uce-853,
            sequence.
ACCESSION   KCLA01003196
VERSION     KCLA01003196.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52051upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>984
                     /note="ultra-conserved element locus uce-853"
BASE COUNT          335 a          161 c          152 g          336 t
ORIGIN      
        1 attacataaa gttccatgtg taagcttctc taaataggaa accataattt tgtcaaatat
       61 gtttgccata atttgtcaat aaagctgaaa ccttttgtaa caaactaaat ttggaattac
      121 ttgttttcta gctttaaatg cctgcttgat ctctttttca agagctgcct aaaatggttt
      181 ttatatcaaa attacaaaaa tgaacccaag cctgttttaa gattttttgt gtaagccttt
      241 aaaagttgta ttaataactt ctggttgtta aataatataa aagttaacca actaaactgt
      301 tacatgaatc atggttagta tccactaatg tataacatgt taatggaaag aagtgcttta
      361 gaacaataaa tggattttaa ctatcctcta agcttgatct tcctaaacac aaactctgat
      421 tgacttgttt gtattagcat gtctctcgtg aaaatgtaat ggagtttaaa gaggtaagat
      481 taccacttac cactcttaga ctgtctaaat gctagttctt caacctttga gtttccccgc
      541 acattaaata tcccattcaa catgtaagca ttgcatagat tcacctattt gttttcactc
      601 agaagagtgc attgatggca tctttcgtag tatataacaa gttgtcttga taaacaaatc
      661 atcagtgtca ctgcccagtt gttggtactc aacttcaaaa actttatttg taattttcag
      721 tgctaaatat caccgccctt gaaggcagtt tagagggctg atatttcttt tgagactatc
      781 agacttgatg gctgatgatt attaaggaaa tatgtcgcag gactcaaagg atgactaaac
      841 gttaaacagg taacactaat agtaactctg taattttgag tatgcaacag taatgttaaa
      901 tattctcagt tattaagcta ctgatagtta aaaaagtaaa cctaccaaaa gataacaaat
      961 aggtatatag gctattaaaa caac
//
LOCUS       KCLA01003197             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52065upu ultra-conserved element locus uce-181,
            sequence.
ACCESSION   KCLA01003197
VERSION     KCLA01003197.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52065upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-181"
BASE COUNT          159 a          129 c          138 g          170 t
ORIGIN      
        1 tttctaatga tttggaccca tttcaccaca tcacctgctc ttttagtgaa cttgctgcat
       61 ccaatccata atctgagcca tcaggatggc agttctccgg ttgccacacc tacactctca
      121 agagctggct tgtggaagct tgtatggggt tctagtccta aatctcttga tggcactggg
      181 gtcattgtag tgaatttcat aggatgcaat tgccggtgtc tggcttgcct gctacttccc
      241 tgttagaatt cagcatgcca gacctacagc acccctgtct ttcattagtg gaattcaaaa
      301 agacactcac atttccataa ataaattagg aattcggtgg tttcttccgg ctaatcaggg
      361 caggctgata aacctcgcta gctgtttaat aaatgaattg tgactgatta cctattaata
      421 tgggtgcctc aggaattcac cctgggggaa gtagagcagt gaaatagaga agggcatggc
      481 cccctgggaa atcagagctt catgtttgca gcttaaatat ctctgtgaag tatcaataag
      541 gaggtaattg aattttgaac acaaacatga acacccgatg gatggacgcg gggagg
//
LOCUS       KCLA01003198             600 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52081upu ultra-conserved element locus uce-1484,
            sequence.
ACCESSION   KCLA01003198
VERSION     KCLA01003198.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 600)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..600
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52081upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>600
                     /note="ultra-conserved element locus uce-1484"
BASE COUNT          187 a          122 c          105 g          186 t
ORIGIN      
        1 caagccttca ggtttaggtg tgatacgtaa aaagataaag ctgatttgag agagttacta
       61 gaaaagattt catcaatatc ctgccttttc attccaaggc actaaaggag taaaaatgaa
      121 atgtgcttat gaaaaataaa ataaggattt tcttagttac aattcctggc ccttcaatga
      181 ttgcagtaaa ttataaatta tgcagtcaat gtaggccaac aaaagaagac atcttcaaat
      241 ctcagtcaaa ggtaattact taagtcggct gaatgttctc ttttcataga gtgtgatctc
      301 tctttgacag ctcacactga cagatgacct tctcagcgac attcttatcc ttcggatcat
      361 gagcagtgtg cctctctccc tgaatatctc tatatatttg tgacactaag ctttcaaata
      421 cagctattga caaatcagaa catcagtcta agtgctggtc ttcctatcac tcacaataaa
      481 gtagctatca cttgtggtgt tgtagagcaa gcacatctct gaaaaatgag ttctcaccaa
      541 gtgctaattt gacacagctc gcttgccttc ccataattgc tctgtcattg tcagttggca
//
LOCUS       KCLA01003199             612 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52096upu ultra-conserved element locus uce-2579,
            sequence.
ACCESSION   KCLA01003199
VERSION     KCLA01003199.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 612)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..612
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52096upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>612
                     /note="ultra-conserved element locus uce-2579"
BASE COUNT          199 a           98 c          104 g          211 t
ORIGIN      
        1 ttctgacctg agtggtgtgg agactgtggt ttttacaaca ctctcagatg ggatcgactt
       61 ggatgggcac agaatatgac ataggcaaga attgaatgat tgatattaat tgcataaatg
      121 ctcaacggtt tcatgagttt tgagtgcaaa tgttcagact gtccaagatt agcattatga
      181 agagacatac aaagttcata acgagaatgc tacctgcaac tgactaaatt atttaatata
      241 attttgtttt gtttataatt ccagtttgaa atcaagaaca tctacaaccc caagcatcag
      301 tgctcttcaa tatctaattt cacagttttc ttaacacata cctcatgtta tttattatag
      361 tcagtgtcat ctcaacacct ttgtctattc ttgctacatt ttaaatggtt tagttggcaa
      421 gtcatcaatc ataaatcatg agacatattt taacttcaac taagatcagt ttagaaagaa
      481 aacaagtctt gtatggccta attgagtaca ttactcacat ctataagtga taaatgcctg
      541 ttctggaata gattttttca gagttttggt atatagctag agacagaaac aaaattttaa
      601 gtttctttat gg
//
LOCUS       KCLA01003200             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52112upu ultra-conserved element locus uce-3288,
            sequence.
ACCESSION   KCLA01003200
VERSION     KCLA01003200.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52112upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-3288"
BASE COUNT          146 a          238 c          265 g          229 t
ORIGIN      
        1 gtctgggatc cccccagcct ttctgcagag gggcctaggg gtgtttgaat gggaaacagt
       61 gtgagttttg ggaatggtgg atccctgaaa acattgcaca cctgcacttc tccacagaga
      121 aatggagctc tcctgcagcc cccagcactg ggtgccaatg cctgctgggc aggggggcag
      181 tgagtccagc agttgcctgt ggcagttggt gtgtgccagg gtggatgtgg tgtgatgcag
      241 ttgcttcagt ctccaccacc tgttcagaag atagcgttac ctctgatcac gggctgtgtc
      301 tttgctgaag ggggtcccat atccctactt ttccctgccc ctgctcctct gtggtgccac
      361 tgtctccagc tttggtactg ggtctcctgc tcttcacctc tctctgtgtc ctgccagtgg
      421 ttttacccta tggtaggtta cgtcatgctg ttctaccaca gggtagaacc acggacggga
      481 tgctggggct gcctctgcat ccaaggactt cagtctctgt gcggctgagg gagcaaagcc
      541 aaggtggtac ctgtcccgtg ctgctttgag cttttactgg ggctcctggg agcctgtgca
      601 gctcagggtg tgtgtgcacg gcttggatgt gtatgtttaa gacagtttgg gattcactgg
      661 gctgtgtggt accttctggg atccctggcg cttcaagcgg ggcctccatc aaaccaggat
      721 gtttcttgct gatgtctcca gaagcccttc acaaacgtgg gtcagaggac accctgcacc
      781 agcacctcaa ggagacaggc acctggtttg tgcggggtgt gcggtagagg cacatggctt
      841 gtccccaggc accctggctc cttgagcccc ttgtcacc
//
LOCUS       KCLA01003201            1203 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52127upu ultra-conserved element locus uce-255,
            sequence.
ACCESSION   KCLA01003201
VERSION     KCLA01003201.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1203)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1203)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1203
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52127upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1203
                     /note="ultra-conserved element locus uce-255"
BASE COUNT          429 a          258 c          185 g          331 t
ORIGIN      
        1 agaacacact ctgtagctac aacacaccta cacacaacat cccccttcat ttccataagc
       61 cactcccctc ttccttcaag aacactgcac taaatctaac ccttttactt gtaataaaca
      121 actttcccaa gcatacagtc tgtctgataa aaataaaact ccaaatattg attttaattg
      181 gaatgaagtg ctgtaacatt atgcacaaag ctttagtgaa gtggcaattt acctaagggg
      241 tttactgatt gaaaagctct caaacctgaa atcactacag agagagaaag aaaaaaggga
      301 ctctctgggg tggggggtag actggtaaaa caaatccctc tctacaaatc tgaagcagat
      361 gttagcgtgg agagaagtca attcagcaag gtacaatgag ctttacaaaa attattctgc
      421 taaaagagaa cgggctcttg aaagagctaa atgtttttct gttcatttgc cataccaagg
      481 aatcttcaag gagactggtg ttgcaattac aactaatcct ccccaaaaaa ttaactgtgt
      541 tgaaggcttt gtaatttccc taggtacaat ttagctgtca cttactttaa aatttactca
      601 aacattcgtt ccgaacagca ctaacttcac atgtcaagtg ctttccagcc aattgagtct
      661 aaactggaag tcggtgttaa acaactgaat gattagacaa gatagctcat ttccctgctc
      721 ttttgttcag aataaaatgc cacatttaca ttatcagact caacaggatt ttctgacaga
      781 gggagaaaaa accccagtga acactgtcca taccaagcac atgaagcctg tcatttacca
      841 atcatccttc aaaaagcaat agccatgaat gtaacttaat tacgacccaa tgatccttga
      901 cgaaaaatca tcttatcact gtcctgtccc cacagggcaa atgagacact tttgtccttt
      961 ggcaccaacg atgctaaatt cctaattgca ataatagagt aaaagagcca aacatcccta
     1021 atttcgtggt gagttttaat acaaatattt gaaataaagc cgctaaaaat gacaaaaaaa
     1081 cctcagcact agttatttcc ccccgtacta aaaataacat ctcattttaa aagatgccta
     1141 tttttaaaag taaatttaaa agtcaaataa cttgcatgag ttaattaata atctcaaaca
     1201 aaa
//
LOCUS       KCLA01003202            1066 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52143upu ultra-conserved element locus uce-3897,
            sequence.
ACCESSION   KCLA01003202
VERSION     KCLA01003202.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1066)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1066)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1066
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52143upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1066
                     /note="ultra-conserved element locus uce-3897"
BASE COUNT          349 a          220 c          176 g          321 t
ORIGIN      
        1 ttattctaaa agaataagct atttagaaat aaacttctga agttccaaag acagcttagc
       61 tgtcaaagaa acaaagcttc tagatttcac ccttttcaca gcaaggtaat atactgggca
      121 gtctttattc tacatgctac aagagaggtt ttatttagct tacctattca ctgatctata
      181 ggagtagaat atatatacct cacacttctt attctgaaac actgagcttc aaacgagtta
      241 ggccacagct gctgaagctg tctacagtac agcagttttt gaaggtagtg taacagatac
      301 aagtaaatct tgggtaaata agcatctggt tactctgaaa tgcaaagacc ttggatttgt
      361 tttcttgcta ggtgtgatcc agccatagcc agcacagacc aatccacatt gccctaccat
      421 tcacctcaac cttgacctgg agattaaact cacttttatt gcacacaaag gtcacctgtg
      481 ttaggtcaaa attcaaagtc ccttgtcagc taaggttgat atattccaac ctttcctact
      541 ctaatgcatc aaatttttca tggtgaggtc atattcagca gacagtgtat tcagcaattt
      601 atcgtgccat tgtaatatag cccagaatat gactgtccaa gaaataattc acgaataaaa
      661 tattttcccc tctgatgtag caaatctcat aaaaccttag tctacacttg tttgaaggct
      721 tcagaggaat gacacagttt gggactattt ctgaaataca atcaaaaatg accattttta
      781 tcatcattgt cttaaagtac aagctgtata atggtaccct aaaatacaca agtcaattaa
      841 aatgcacata tggtcagtgt taaaacttcc acttcatcct tctaacaacc accataatct
      901 ggcccttaaa tctacagaca tctgttggtc tgtctgatga caccaagctt gcattacaaa
      961 tgtttagggg aaacagtgct gcaagactta tatgcctgag ctgatggtga ctatcacaac
     1021 catggaattt gtgaagtggc aaaaagtaca accaaattaa atttca
//
LOCUS       KCLA01003203             662 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52158upu ultra-conserved element locus uce-4548,
            sequence.
ACCESSION   KCLA01003203
VERSION     KCLA01003203.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 662)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..662
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52158upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>662
                     /note="ultra-conserved element locus uce-4548"
BASE COUNT          216 a          122 c          115 g          209 t
ORIGIN      
        1 tactgtcctc ttttggtttt gaaagcaaaa cactcctttt gcaaaagagc agtgagtgta
       61 aattgtagct tttacctaat cctaaccact ttcaagtgtt tatgccctga aatccagtgc
      121 cccagcaaac atatactgcg agcattaccc aagaaaacca gtatcttaac attttttaaa
      181 ttaggtgcct tttatttctg aaaagctaat atccaaacta gcaacagtaa agatgtccag
      241 gtttcaatga aatatatttc ataaattagc ttatcattgc actgatttag catgcctagc
      301 aggtgaaaga caaaaacatg tgttatcttc cctagggaac cttcaatgaa tgtcattcta
      361 gcttcatatg tctttcttct ctccccttct tgaactgata taaaattcta atgtgtgccc
      421 tctggttcca tcttcattga aatctagcaa aaccgctgaa ggtaagatag tggcaatggt
      481 gcatgaaaaa agggaaaagg aatacagtga ttcatagcat acttgaagaa agttgcagtt
      541 gttaacagca ctacttttgt atgtagacag gttaaaatgt gtcatatatc agtgttaaaa
      601 ataaagttat tcatcttggc tattttctca aagtttggga aaaaaggcag taaagcctga
      661 gc
//
LOCUS       KCLA01003204            1089 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52188upu ultra-conserved element locus uce-52,
            sequence.
ACCESSION   KCLA01003204
VERSION     KCLA01003204.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1089)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52188upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1089
                     /note="ultra-conserved element locus uce-52"
BASE COUNT          328 a          187 c          220 g          354 t
ORIGIN      
        1 aggaggatca attaaagata cactcccatg tctgaaatag ggtgtctgct gaaactttga
       61 gggtctgctt tgaactgtct cccttgacca tgaatcatgc agcttgacat atttttagtt
      121 gctgctatat atttagattc ttagattagc agtatcctct cttggattgg gcatttacac
      181 aaggacaaaa ccgaaccaac tgagaattct tcctcagaac acggtcagtg gtgctggtaa
      241 tgttttgagg agtctcttaa gtggtgttat gttatgctct gatatcttaa agcatggaaa
      301 acacttgaga agttgtgaat gcaagaaaca gccccaaagt accttaatcc ttatatcgat
      361 aacactacta ttgggttaca tggttttaat cccagaggag ttgttgcctg acattaaact
      421 gtccaaacag tatttatatc tgctgctgcc ctgcaagatc acttaaccct gcacagcagt
      481 ttaaaagtag ttaatgacag acccagcatg acttgcctct tatgaatgat cacataagtt
      541 cgacctgtgc tgtcatggtt tatggaggaa ggcagtttgt ccatagcctg cttcagccac
      601 agcaggtaat ttgaaatgaa atgagacagt ttctacaagc agattgattt gggaatcttg
      661 cctgttcttc cctttgaccc ttgacaagtt gacactacaa agattgtgac tttaaaaaat
      721 gattgggtgc aaatacattt aggtagatga tttactatgt gttaaagcaa ggacagtgca
      781 tttgggatgg agttgtgagg gaaggtaatt gtaaacttta acaactcaag ttttatattt
      841 ctgtatctta ttaattatcc aactaaatct tcagataata gtagaccaac tactgtatct
      901 aataaaatgt atgtgagatt ccacaggctc tttattcttc tattcagaat tttagctatg
      961 aaaaataagt atatatgata tagaagtgca agtggagtgt ttgcttgatt gagctgccag
     1021 ggttaaatct aaagatgtac gtctgaatgt atagatatcc caactcaaag gtatctttat
     1081 tttgttatt
//
LOCUS       KCLA01003205             561 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52204upu ultra-conserved element locus uce-7004,
            sequence.
ACCESSION   KCLA01003205
VERSION     KCLA01003205.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 561)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..561
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52204upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>561
                     /note="ultra-conserved element locus uce-7004"
BASE COUNT          148 a          114 c          118 g          181 t
ORIGIN      
        1 ccccaccctt cctcttttct aaccgagact ttgcttttga gctacggtgt tttccccaag
       61 ccattttcca caatgagatg ctaacagttg tttgtctgat aaagcacgta ctatttagaa
      121 cacagatgtt tgattattat ttatttctct ccgaagcccg ctaattcagt cccaaatgat
      181 cttttttttt ccttttgctt aaatttaatt tggaatgtat gttgttggta agtgacagat
      241 agtttaatta ttaataggat cccgcgatgc aatgcaccat cgttttaaag tcatctgggg
      301 ccaaaccaac actacttcct tctttcctga tgcttctggg attcctcgaa gaatgcaaag
      361 gtaattacaa aactcatgac aaatctgcag ctattatgtc ctttcctcaa catttgtgct
      421 tgcctatggt tttacaaagc accgttctta ctatggaatg gcaatgaatc aggagaggct
      481 tctgctatgg ttgcttcctt gggagaacgg agtgtctggg gaggaaaggg agggggagag
      541 cagaggaaga aagaacaggg a
//
LOCUS       KCLA01003206            1159 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52219upu ultra-conserved element locus uce-2385,
            sequence.
ACCESSION   KCLA01003206
VERSION     KCLA01003206.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1159)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1159)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1159
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52219upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1159
                     /note="ultra-conserved element locus uce-2385"
BASE COUNT          303 a          223 c          222 g          411 t
ORIGIN      
        1 tgtagcactg acccaatgtc ttgtcatatc aatattcctg cttctccctt acttttcaag
       61 catgtgcgtt tgttagggtg ggaaaggcag aggtaactca ctctgtacaa cgtgcattcc
      121 aagtggtaga aaacgtggct tactttcctt tgaaaaaggg gtgttaccta ttgctgtgca
      181 gacatggaag ctttcagatg ctttctgtac aaacttaaac tcagcaaaca ttttcattca
      241 tgtttgtgtt ctgctattca gatctgtgga tggtgataat gccaaaatgt tcaagacata
      301 gaacacctaa ccttaaaact ctgcacagct gtagttgtac ccttgcttcc ccagtgttat
      361 tttttttctc cactccttac ccattcaaat gtacctttta ttcctaaatc tctcttggtt
      421 gtggcacaat cctaatgtgc acctgatttt atgagcaaga tttcaactcc tgtccttctg
      481 tgtgttttcg cagccatgcc cggttacgct gtatgtgcgc ctgcaacagg tgtacatttt
      541 gcatctgtca gaacttcctc aactcagact tgctgcaatc tgtaaagaac aaactcttca
      601 ctgcagttct taacaggtcc ttaactttat ttattaggta ccaggtgtgc ttttaaaata
      661 catttttttt gaaaaagcaa ttgagaacct tgtatactgc ggacgttgca ctccatatct
      721 actaactagg caaatacttt aatgattgtt gtagaactgt caagctttgt ttaatttgat
      781 ggtacttttg gtcttttgag cttagtccag tgatttcttt gaaatactat taatttggcc
      841 gttgattcag acacttagtc attgcaaaaa tactgtggag gaagtagggc tgtgttttta
      901 ggaagctgct gatgggtgtt aagtagtgac tataaacctg tgtaatgtgt cttacccaag
      961 acattatcgg gttgtttagt attgattaga gatagatacc agttacacac aaattttcat
     1021 aaaggcatag cttgcctgta gcagtactgc atatatattc atatgatatt tgggaattca
     1081 tagtttctgt gtttgtatta tgcttggttt actcaaagag tgtaaagaat gtagagtttg
     1141 taacatccaa ttcctctct
//
LOCUS       KCLA01003207             988 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52234upu ultra-conserved element locus uce-7183,
            sequence.
ACCESSION   KCLA01003207
VERSION     KCLA01003207.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 988)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..988
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>988
                     /note="ultra-conserved element locus uce-7183"
BASE COUNT          300 a          153 c          185 g          350 t
ORIGIN      
        1 attgcatgtt atgttttgag gagttggttc cttgtgaaat taggtgtaga aaaaaatata
       61 ctttactaca gtgaaactga tcttaagact tggtcagaac acaaaaaatc actcattgag
      121 aaaagattag cagttcacta aattaaagtg caattatgta aataactgta atgtggtttt
      181 tttgcttttt tttttaaatt gggctgcctc ttggaagagt cttcagtaga agtttcactg
      241 tactttaaat gtatcattgt atactgtact ggcatgtgcg tgtggtttac atatgtgtat
      301 atagaatatt tgcactttaa atcagactgg aggaaatata cacacgtgta ctgtatgttc
      361 tgcaaactgc acacaataca aacctgataa cctgtgccct ttgtgttttg agcattatca
      421 tgcaaacgtc tcttgccaaa actcacattt ttttcctatt gcagttgaat gcacatttgt
      481 cagaatgtat taatgcccca agtacctgta gttttaagcg ttatggctgc acttttcagg
      541 tcagtatata acaattgtac ttcccacttc atgcaagtct gcaaatagaa cctaactctt
      601 tgacatgaaa gttctggact tctctagtct tggttaagaa aaagtcatcc agttgcactg
      661 agtaattaca cagcagatgt ttggttttgc attttaaaaa caaactattt tataaagccc
      721 acacattcct gcagtggttt gggagttcag ttgctaggaa catcttgatg aaataggaag
      781 atgacacatt tgaagaactt gtaaagttag aggaaagtca ctttcgttct tcagaaaaca
      841 gactagtaac tgaagtgttt gctatgaaag taagtatttt gttgagctga gtgtgtttta
      901 cattttctca tttgtgggtc ttaatatttt tattcagttt aaatgtagat tagtgcactt
      961 aaaacttaag tttagatgtg cattcata
//
LOCUS       KCLA01003208             516 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52248upu ultra-conserved element locus uce-2656,
            sequence.
ACCESSION   KCLA01003208
VERSION     KCLA01003208.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 516)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..516
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52248upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>516
                     /note="ultra-conserved element locus uce-2656"
BASE COUNT          170 a           92 c           84 g          170 t
ORIGIN      
        1 tattacttat tttagtgtaa cacattaaaa tcaaatatct cctgtagcaa aacgattcaa
       61 gtccctggaa ctcaaataat tttctaataa aaaatgcatg agacaaataa atacacttta
      121 tgttccacaa gaaaaggcag tttcaacagg ctaatgctca gagaaaattc attttatcaa
      181 ccagccattt cattctttgg tgctgttaca agctcctcac ggttgctaag caaccataat
      241 tcatcgtacc ttttaatgga tactctgcta ctgctgagaa cattaaggtg aagagaataa
      301 atgccttggg tgaatcttga aatctttcat tatgcatgtc attctatttc tgtaatgcta
      361 taatgctgaa atgtttctgt ggcaggaaac cgagttgtgg taattgcata ttccactcat
      421 atatgttttg taagcagagc agcacgtact tgtctaaaat gagctatttc taacatgatt
      481 gaaattggac ttttctactt ccaaaggtag taaata
//
LOCUS       KCLA01003209             286 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52262upu ultra-conserved element locus uce-4170,
            sequence.
ACCESSION   KCLA01003209
VERSION     KCLA01003209.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 286)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..286
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52262upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>286
                     /note="ultra-conserved element locus uce-4170"
BASE COUNT          101 a           54 c           49 g           82 t
ORIGIN      
        1 aaagacctgg gtccccattc attggcagcc accacaacat acagttaccc cctatatatt
       61 gtttgtagaa caaagatatc tacaaacatt tcatctgtgt ctcagctgta atgtactata
      121 gatggatatt ttaaatgtga gcaatacatt acagaagaca caactgatct agataatttt
      181 cttttgaaag agaaatgagt agtaattgat tggcctatat ccaaagtcac agtggggttc
      241 aaaaagcttg taagtgccct cataaaaata gaagctgtat caacca
//
LOCUS       KCLA01003210             775 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52276upu ultra-conserved element locus uce-3338,
            sequence.
ACCESSION   KCLA01003210
VERSION     KCLA01003210.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 775)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..775
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52276upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>775
                     /note="ultra-conserved element locus uce-3338"
BASE COUNT          230 a          166 c          155 g          224 t
ORIGIN      
        1 ctatagaaat cattctacga ggactggcac acacgttaag cagaggggac tgcacgttaa
       61 cttgcattgt actcgtcatc aggcccctta caataaacaa aagccaatag caccaggttg
      121 ggctgcacct cagctgagtt cgcagtcaag ctgtaagcca taagcattta ctagctccag
      181 tgagtctccc gctacatttc catatgccct tatttacgcc tctctcaagg catcctcctg
      241 accacagtta actaatctgt cacagagaaa ctgtaaactt tcggagaaag ttctggttat
      301 tataatattt ctgcatttat attccatcac atcagtatta aaggctttca gttacagtgc
      361 ttctggggat aaagagctaa aatgcctttg ctcacaggtg cattaaatcc tattaaagaa
      421 tcttccttat agcacatacc tcattaccgc atacaaaggc ttggattata aaatgaaggt
      481 gaagtgtaca gagtaagatt tgatattact cggtgtgcat atgctgaagt cattaggttt
      541 tacgctgtac tcgaatgata ggaggtttcg cattcctatt gagttgcttt cagtagtcaa
      601 tgcttctggg tcaagtagtc tgacatgggg tgatgtgtct caatacaggg gatgagaaaa
      661 cttctttaag cagctttaca caatgacaag tgcacttccc tccacagctt tattatgcaa
      721 tataagcatc aggtcataga acagtccaca gtgtggggat caaatagaac taaac
//
LOCUS       KCLA01003211             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52291upu ultra-conserved element locus uce-2796,
            sequence.
ACCESSION   KCLA01003211
VERSION     KCLA01003211.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52291upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-2796"
BASE COUNT          157 a           91 c           81 g          175 t
ORIGIN      
        1 tttatcacca ttgcagtggt tacatggatt tttaaaagac atagatcttt tatattagct
       61 gtcctttttt ataatacctt ttacaaattt aatcaatgca ttttaatata caatatagtt
      121 taagtgcaat atacaataaa tatttgaact tcatcttaaa catgctttag cctttaaatt
      181 gttaaaactg cagtgccctt tcaatctact tacataatgt cataaaatat acatttcaag
      241 gtaaatgaag tcagctactt caatttagtc cctcaaactg gtagtaaatg agaggttaac
      301 actatggtgc caaacccatt attgagtaaa tttagcacct tggacagctc tgtaaaatct
      361 ttattgcttt cctgacctgc tcgtcatgtt ctgtctatgt gttcagtggc tctcagctct
      421 gattgaaagg caatatatta gatcccgaac acaaacatgc tcgggggctg cttcactgtg
      481 agcgtaatga catggaggtg agaa
//
LOCUS       KCLA01003212             757 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52307upu ultra-conserved element locus uce-5244,
            sequence.
ACCESSION   KCLA01003212
VERSION     KCLA01003212.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 757)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..757
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52307upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>757
                     /note="ultra-conserved element locus uce-5244"
BASE COUNT          210 a          172 c          160 g          215 t
ORIGIN      
        1 aatacgaaca caggaaggta ggagctgaca gcatacagcc ttccagacag ttttttttag
       61 ttgttatgga gtataataag atcttgcttt cctctgcagt tttcccgtaa tgtttatggc
      121 ttaggtaaca ggttaaatgt aggtgacttt ttttttcata tattatgccg tgtgtcagaa
      181 gccctcattt tacaggtagc ataggaacaa tgaatgagat tacagaagga aagagtgaga
      241 tggccttggg gaaagaccat acctgaactc tgtaaactca tactgctatt aaaacacctc
      301 caagtctcat tacctcacct taactctgtc attcccctga cacctgcctc gctttgcctc
      361 tgtggtctgt ccacctacct tggaaaatgc taaacaagtt tcgctattta cctgtttatt
      421 attaaatcgc aaaattatct gttcagttcc agattaaggt ctgcattaaa tgtcatagca
      481 tttatctttc atggaacgag acagcgagga cactaatttc ccaggcactc aatcactgcc
      541 ccgtgccagc agtaagcggc tcggggaggc gcgtgctcgc cgttcacagc tcgctgacag
      601 cgctggggcg gaatcataaa agtcaattaa tcattaaaag ctgttaccag cctgtattga
      661 acagctctgg tgcaaaatgt taatcagctc tgcatcgata ccataaattc cagcaaattg
      721 gcgcagtcaa tggtgccgag gcccgacggg tcaatag
//
LOCUS       KCLA01003213             680 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52322upu ultra-conserved element locus uce-7892,
            sequence.
ACCESSION   KCLA01003213
VERSION     KCLA01003213.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 680)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..680
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52322upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>680
                     /note="ultra-conserved element locus uce-7892"
BASE COUNT          236 a          115 c          136 g          193 t
ORIGIN      
        1 tttagatttg cagcagtagg tttatagttt ccgcaagcaa acaactttta aagatggaaa
       61 acactgttcc atacttaatg catttgttta tttttgaagt cttaaaggaa aaaaaggaag
      121 agtagctcaa taatcagatg taaaggtcat caagactaag tacagcttgg aaccagtgaa
      181 ctatcggacc caagagtaaa gcagccagaa agaaataaaa ataaaaggta acagattcag
      241 cattgtccaa aagttccaga ccagtgatta atgtgtaaga taatggactt gggaaatgag
      301 taaacactcc cgtgctccct gctttgtgct tgaatgactt gatgacaagg gcagagcaag
      361 gtgagaattt aaacaggact acaggaaaat agaccttgcc acagcagcat gcgagggaga
      421 gtgcataggt ttgcctgact gcagtgcaga ggagcactag ggacacagac cccaaaatca
      481 gtaatttcta ttgtactagt attaaaattt gcaataatta accactgttt tttttaagaa
      541 attaaatttg gagtaaaccc caaatctcac actaatctta tatttgtttt aaaactttag
      601 tcatggtttc tctgaacttt tgatacttgt catcttagat ttactattag agacctccag
      661 aatgatggct tcagctgtat
//
LOCUS       KCLA01003214             877 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52365upu ultra-conserved element locus uce-1970,
            sequence.
ACCESSION   KCLA01003214
VERSION     KCLA01003214.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 877)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..877
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52365upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>877
                     /note="ultra-conserved element locus uce-1970"
BASE COUNT          257 a          159 c          195 g          266 t
ORIGIN      
        1 ggggggtggg ggtgtgggcc cgtgtacagt ttcaagtttg tacatacatc ttaaaatgaa
       61 ccttcttgct cagcactctg taggtatcaa agcaggcgag aactgcacag gaccgtctcg
      121 gtagcagcat ctgcatgagt ttctcttaat tcagtgatgc ttttgctagc atcactttct
      181 atttttgcta aaaaaagcct gaatgggtgt ttgatcagtt ctgagggcat tgctgaggag
      241 aagagaggta taaggctagg attttggtgg gaatcgggtg agctgttatt gattcacaga
      301 gcacgacaaa acatcactgc atgaattagc aaacagctgt ttctaatttg agtttagaac
      361 tgtacacaga ggaacttgtt ttagtgttca ctcctttcat ttataatgaa ttttaattac
      421 cgctacaggt gagaaaaatg tagaaacaag cttgtatctt gtggaagaaa caaaggagag
      481 acagatgcta acagatttac agtctgtgat aaaaggaatg ttttggtaca ctttacatgt
      541 aattagagtg cagctgtttg cagtcccaag tccatgatgc acagcagaat ataggatctg
      601 ctgcttttcc aaagggagtc aagaaaaaca gtgattcaac cccgaaagca ttctgcttat
      661 tcctagatct aacataaaac tttctcctcc acctcttact gtgccattta ctgaagtgtg
      721 aaagaactta tttaatgata tggtaatttc tttgttacag acttgttgac actataccaa
      781 accagataac tttctgggtt tagcatctgt ctaggatcag gtatcatcct atctgagtcg
      841 tgatagctct gctaatatga gacaaaggct caaccgt
//
LOCUS       KCLA01003215             749 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52380upu ultra-conserved element locus uce-2998,
            sequence.
ACCESSION   KCLA01003215
VERSION     KCLA01003215.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 749)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..749
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52380upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>749
                     /note="ultra-conserved element locus uce-2998"
BASE COUNT          209 a          159 c          153 g          228 t
ORIGIN      
        1 gggagttggg agggggggga accaaaggat ttttcatgtc tctcagatct gttggcctat
       61 tctccaaatg acaggttcct gactgatcaa ctataccacc tgctaccaaa gcccagtaat
      121 attagtcagt gcaatggctt cattctcatc ttacacctca gagctcttga gctcaacccc
      181 aggcatcccc tgtgtgttta aatcagctta acggctcata ccgtgtgctg atttccttgt
      241 aggcctctgt tttctcaaaa agtgatcacc ttttgccaat gccctcagga ttaaacaggg
      301 cagtccggtt ttccttttct gcattggcta tacctttgta gtcaataaaa gactaactag
      361 aaaaggatca gctgatgaga gaatcaatct tctggaagcc tccccacagt tttctcatca
      421 tttttgtgct gtctgtcatc tcagattgta aaatggaaac caaaactcag tatgtgggaa
      481 gacttttagt gctccttgtt aacaaaaaca gtaagacagg gggttttgat cttatcggtg
      541 tataggtaaa cagtaagctg taagtgtgca ctcttgaagt agcttttcca tgtttctaat
      601 ggaggtctgc aaaaaaatta tcaaagaagt atcacaaagg tctcataaca tactgtagtg
      661 tagatatcca ttctgagtag gtcaggttaa atctgaagtt ctttataaca atacaggagt
      721 atcttgcagt acagctgcac tacttccca
//
LOCUS       KCLA01003216             222 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52409upu ultra-conserved element locus uce-5214,
            sequence.
ACCESSION   KCLA01003216
VERSION     KCLA01003216.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 222)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 222)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..222
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52409upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>222
                     /note="ultra-conserved element locus uce-5214"
BASE COUNT           62 a           30 c           50 g           80 t
ORIGIN      
        1 gttagtgaat aatattctaa ctttgtttgg ttaatgtttg cagggcactt acagatgcta
       61 gaataatctc taatgttttt gctcaatctg ctctggagat ggatgaaata aatagtttaa
      121 actaattaat gtaacaccag ctgttacaag tgcttggcag acgtctgtga gttttgatgg
      181 gcagagagcg gctgttgtac ttgactttat tttagtacaa tg
//
LOCUS       KCLA01003217             862 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52425upu ultra-conserved element locus uce-5176,
            sequence.
ACCESSION   KCLA01003217
VERSION     KCLA01003217.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 862)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..862
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52425upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>862
                     /note="ultra-conserved element locus uce-5176"
BASE COUNT          255 a          179 c          161 g          267 t
ORIGIN      
        1 gttaaattgg tgttaaggca aaagcatacc cagataaata gtttttattc tttgcagatt
       61 ttaatacctg tttttataaa gctcagaaca aaaccgattt tctcccctgc tggtgagttt
      121 tgcagaataa ttaggaaaaa ccttccgcca acccagaaca ttgaatctta ggaggtaaat
      181 gtggggctcc ctccacttct gagcttttta gaggctcaat atgctcttaa ctttgcataa
      241 agcccggccc gaagaacaaa gcctgtggac caccaccggg aagtggtatt agccctttcc
      301 gcagccttcc cactgtggat gcatgctcaa ttcccggata aatgcacctt ttaaactata
      361 ttaatgtaaa agttttattt gaaagatgcc agctgcggtc ctagcccagg tttattcatg
      421 tgggacattt actgggtcaa cttaatactt gactactgct tattatccca tcagtcttcg
      481 gggacaaccc atgatctaat tgcccggcat ttatgttgcc ctggcaacta taaatacaga
      541 gtaataatcc ttaaagggcc agtgtagaat ttcaggcccc tgcagtgaag tacacttcat
      601 ttcccagagc accctgtgtt ttttaattca gtgaataaaa atgtgtaatg aataattaac
      661 tatgtgcttg gaggcacaat agctgcctac ttttgaatat tcatcagtga cattattaat
      721 tcactagaaa tcccaaggag cagtgggata ggcttttagc ctagctggag gacttacaga
      781 taatactctg caacatgaac aaactttttc aaacagactt ttctttcgca gagtttttta
      841 gatttaattt ataataaata at
//
LOCUS       KCLA01003218             512 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52440upu ultra-conserved element locus uce-3913,
            sequence.
ACCESSION   KCLA01003218
VERSION     KCLA01003218.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 512)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..512
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52440upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>512
                     /note="ultra-conserved element locus uce-3913"
BASE COUNT          184 a           93 c           92 g          143 t
ORIGIN      
        1 aaagaaagtg aacatccctt ggatcaggaa gggaaaaatt tctatcaact caacagaaaa
       61 caaactatca ccaacaatga aacctgtgtg ctcacataat gcactatgcc cttacgcaca
      121 atattctgta tggaagatac tgtatcagtc acattgtaaa agacctagat caacttaaaa
      181 aaataaaacc caatagaatg attacagccg ctgcatagaa tgacaagtat tatcaacaaa
      241 aattaatcag gcgcatcttt tagtgaactc aattaataat gtgcaacaac agggtctctt
      301 ttcttaagat gaaaattaat tagtggaggg aaggtcactt ggagatgctg acatcactca
      361 tcagaatgct ctggcagctc taattatttg tcttccaggc ttgggtgatc agaaattatt
      421 gcaatacctg agcaacattt tgaaaaagct ttgtgcatgg ctcttttaat tagacctggt
      481 atttgattaa tgcagtggaa gcatttagat ca
//
LOCUS       KCLA01003219             596 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52455upu ultra-conserved element locus uce-6593,
            sequence.
ACCESSION   KCLA01003219
VERSION     KCLA01003219.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 596)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..596
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52455upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>596
                     /note="ultra-conserved element locus uce-6593"
BASE COUNT          169 a          113 c          115 g          199 t
ORIGIN      
        1 agactggcct tccatcttgc ctactgggac agtaagatct gtgtgcatta tcctcagtaa
       61 atattacttt cacatttgga tctccagtca tttcccttat gacccctgac tgtcttctcc
      121 tagggtttga ttataagtca ctgtagtctg gactgggctg gagcctccta aggctttgat
      181 taatccaccg cacctagcat ttctgtgact ataaaaggaa aagttatgat tctgaataag
      241 cattgtgtgg aagaaagaag gaaaagcata aagtattaaa ctttcatcca gcaccatagg
      301 agagatgtag ttattaaatt tcagctgctt atcaaactga tatgaaagtc attttgcatg
      361 attgctttgc atcctcaaat cttctgcttt tatttgcagt gcatctctgt gctttcttat
      421 tagaaaaata ctcaaaggat aaaaaagctg ataatattca gttttgacaa ttaggtagaa
      481 aacacatttt tagaagtgct tttttattgc agccagtaat aatagaggtg gtcctcctgg
      541 tagcagtctc ttctgatgct acccagggtg atgctagctt taccttgtaa tggcta
//
LOCUS       KCLA01003220             212 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52470upu ultra-conserved element locus uce-213,
            sequence.
ACCESSION   KCLA01003220
VERSION     KCLA01003220.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 212)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 212)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..212
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52470upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>212
                     /note="ultra-conserved element locus uce-213"
BASE COUNT           60 a           38 c           47 g           67 t
ORIGIN      
        1 gggttaaaag gccaaattgt gcaagtgtgt gcgctgagtg acagacattt tagtactagc
       61 ctgggaccat attttaaaag gtcactgaaa acttttggct tgggccctct gacaaacaat
      121 gaactttcca tatatttatt tgccatctct ttgtttttac agcaagcaga ataaatgagt
      181 taaatgacgt tgtgcgggtc tgcacattgt ca
//
LOCUS       KCLA01003221             200 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52486upu ultra-conserved element locus uce-7076,
            sequence.
ACCESSION   KCLA01003221
VERSION     KCLA01003221.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 200)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 200)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..200
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52486upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>200
                     /note="ultra-conserved element locus uce-7076"
BASE COUNT           90 a           28 c           38 g           44 t
ORIGIN      
        1 agtctatcaa ttttctgcaa gaaaatttat ttaatagaac ttgtataatc aaacagaaag
       61 ggtaagcaga gaaaaactgc gaaataatct aaaaatgaaa gagccaaaga ttagaaaata
      121 accttaagta agaggaagag gttgttgaga cagcttagca gagacaaaag gcactgaaga
      181 acagaatcat ccatatcctc
//
LOCUS       KCLA01003222             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52502upu ultra-conserved element locus uce-5016,
            sequence.
ACCESSION   KCLA01003222
VERSION     KCLA01003222.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52502upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-5016"
BASE COUNT          289 a          164 c          157 g          286 t
ORIGIN      
        1 atgtgactac acatttatag tgctactaga atcaaaatac ctatttgcag gagacaacat
       61 aagcgtttga aaaggctatt tgtgtacttg aagaagtcta gaacacaggt tagtgatatt
      121 tgaaatgaaa gtatgaattg atcaaaatgc acctcaaagc cagacaatga tatcttttct
      181 ccgtttagat ttacatctga tgttgattat tggcagggaa ggaacataag tggctcatgt
      241 ttacatagtg gggctgatgg cagcctttac ttgttactat ccttaaaacc tggagaacga
      301 gtttttgcaa tgtgactgca atggtaatgg gaaacatgtc tctgagttgt gattgaaggc
      361 actgacctgc catagactta taatagggga gcaggtgtgg caatgatgga ctttaatttc
      421 ctttaataaa ccttttatgt gccacacttt tactgccatt ctatgctctc caaggtcctg
      481 cacataatag gttcattact tttgattact atagtctatt gagacaaaca actccagaac
      541 acactatata ttatgttcag ttaaaccaat atagactatt tatccactgt gcattatttc
      601 acctgcaact ctacagacaa aattaacaac agctcctgta agctaaaact attaaaacca
      661 ctggtactcc tttgtcatca tttcataata aataccacac caatcacagt gctgctcttt
      721 taattatgaa acaaaaagtg tctactgctt ctactgagca gcagttactt tggtctaaat
      781 agcacgttgc attgtgatga atatttaaaa actgcacaat gagtgaaaac caacaataaa
      841 atcgatgcag gggatttttc tattgacttt ctttccttgt aataatttga gactat
//
LOCUS       KCLA01003223             611 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52533upu ultra-conserved element locus uce-3564,
            sequence.
ACCESSION   KCLA01003223
VERSION     KCLA01003223.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 611)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..611
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52533upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>611
                     /note="ultra-conserved element locus uce-3564"
BASE COUNT          178 a          101 c          134 g          198 t
ORIGIN      
        1 gatgaacatg ttacgtgggt tttttaagtt ttccttaata gtaactgcaa atatgcacat
       61 catataaaat ataaccttct gattttcctt cacttatgtt atcagtgcta cagctagcac
      121 cagggaaaag aactggttag aaaaagattc acatgttgtg ggtgaactag cagtctgcgg
      181 tgagatagag ggctgttctt actgcctgaa tgacgtgata cactaggtct tcatcagagg
      241 agtggtgaat aaaagaagat ttatgttcaa atcacatgct ttaaatattt ctgctaagtg
      301 ctagtttgct ctttggtgtt tagcctgaaa tttaaagcac tgaggattaa aaggattaca
      361 acataatctt aaataatcct aagtgtcatt tacagagaga tggttgtaat aactaaataa
      421 aaccatgtta agggatggca gtgttgtcag tcagcaactg gaacagaaac ggctcctgtg
      481 tcaccctgtc gttctcctct tcccattact tggcttagtt tgatactggg taggtgcatt
      541 ttgatgtggg ttatcgcaaa tagcatgatg ggctgttttt catccagtat tcacatggct
      601 gctaaggtta g
//
LOCUS       KCLA01003224             520 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52547upu ultra-conserved element locus uce-1246,
            sequence.
ACCESSION   KCLA01003224
VERSION     KCLA01003224.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 520)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..520
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52547upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>520
                     /note="ultra-conserved element locus uce-1246"
BASE COUNT          166 a           96 c           81 g          177 t
ORIGIN      
        1 ctcacaaaag attaaaaaca tcctcctatt aaatctagat acttcttttt gttattcaaa
       61 gacatgaata tatttaggaa aatgtatatg attttaatgc ctgaaaccag aaagctacct
      121 tgattcccat taaaacttgg aatatttaat ggttttgctt cttctgtggc acttttttga
      181 tactgtgaag aagaacaaaa aagatttctg agaacatata aaacaaaaac ccgtgtttga
      241 agtattataa taaaacaacc ttcctctttt aatgctaagt ccctttttaa tgaagatcct
      301 ctggcagctc ttgaatgtat aactagttta tatcatggga tgaagctgtc tgttctgatg
      361 attgacatga gcccacatta caatgtgatt ctgaaaatta gtccatagag gtccttttca
      421 ggtactactc agactgagag ctgccctcca actacagtag agccttttta accccactca
      481 ttggtattct aatctggaag tgctgtcctg ctttttaaat
//
LOCUS       KCLA01003225             843 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52562upu ultra-conserved element locus uce-1154,
            sequence.
ACCESSION   KCLA01003225
VERSION     KCLA01003225.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 843)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..843
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52562upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>843
                     /note="ultra-conserved element locus uce-1154"
BASE COUNT          225 a          211 c          162 g          245 t
ORIGIN      
        1 gtattgctaa cccatcacac aaacagcccc tcagtccatc tgattaatgc ttctagggga
       61 aaggaagcaa agaagtctga ccatcaaccc atcctgtatc cccttctaat gaatcaagta
      121 ggaggaaagg gagaactttc actatcagac tttcaccctc tcttcccagc acacagctct
      181 gcttgttggt ttttcttggc agtgtgtttt tgttcagcac tatttgttaa ataatagaag
      241 gtccctctgc agcgggacag agggctactc ctttaaggcc tctcctggat gccctttccc
      301 tttgacatga ctatcctcga tccctttgat ttaagagttc ctctcttggc cctgacagta
      361 aggtatttct gtcccacaga ttataactca ctctgggcta ttattcaact cccaagctct
      421 ggccctgctg catttagtcc aaacataata tccttcatgc atatattatc tgtctcccta
      481 ttatctggaa tcattttgga attaaatttc agtcctgcaa tattggcttg aagagcggct
      541 cgctttatgg gctagtcaaa ggttagaata ccaatcaaaa taacactgcc gatgcagaga
      601 gacattttaa tattccaaaa cccggtaatt gtaaaaagac ataatatttt ttccctgatt
      661 accccaaagg caacacatgt taacaaggcg agggagggtg aaagaaattt cagagttcag
      721 acagctgcac gacagattta aaggagaagt catggatggc tgtcacactc cagtcctcgg
      781 aagccccatg ctccttggga ccctgtgtct ccagccttgt gatgtccttg ccattcatgc
      841 tcc
//
LOCUS       KCLA01003226             453 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52578upu ultra-conserved element locus uce-256,
            sequence.
ACCESSION   KCLA01003226
VERSION     KCLA01003226.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 453)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..453
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52578upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>453
                     /note="ultra-conserved element locus uce-256"
BASE COUNT          164 a           77 c          105 g          107 t
ORIGIN      
        1 aaaataataa aataaaaata taaagaagta ggagagaaag agaaagaaag ttaaactgtc
       61 cttgttataa ttgttaactc tgatcgctca agtagaagac gggctgatta aaactccaaa
      121 cgagccccga gctcgcttaa atctcagagt ccggaatgat agaatcagag gagtttattc
      181 ataccattaa gccccagaga acttaattga aagaagagca tagcctggac cttgacaagc
      241 gggaggtcac agtaattgct gccggacata tttaacatta agataatcag gccattaatt
      301 accctttgga tcattaaatc agccagttgc aaaatgaaat ttctgcctct attactcact
      361 tgagagacca caggggtggc ttttaattta tcagtgagct tgagatacaa aggaccaggc
      421 ttcgggagga agaaaagggg gagaaagtgg ggg
//
LOCUS       KCLA01003227             883 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52594upu ultra-conserved element locus uce-4601,
            sequence.
ACCESSION   KCLA01003227
VERSION     KCLA01003227.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 883)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..883
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52594upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>883
                     /note="ultra-conserved element locus uce-4601"
BASE COUNT          229 a          199 c          191 g          264 t
ORIGIN      
        1 ctgagttgga aactccagtg cattgagata acttttcaaa gacaagtgga gtttagggtt
       61 catcactcct gattttgtac catttgctga gttcccttca tgctctttaa gctgctatga
      121 ttctaatttt ctgatgccaa ttaattttcc atccccttta acctccctcc gggggctaca
      181 gttttccttg cgtttgccgc tgctagatga cagaccgcat ggcgccgaac aatatgacaa
      241 aattcaacct gtcgcttatt taaaacaaat aaagcccaaa ctaaacaaaa acgcttgtgc
      301 cgcggttgaa tgagcagaag tttgtttatt gaaaatgtgt tttgtttttc tttccaaagc
      361 cttctccgac atccaagttc atccagggct acttgggagc tgtcataagc gccgtctcaa
      421 tagcagtggg taacgcttta tatctctctc ttcctctcct aaataagtgc tcccttccac
      481 tagcactttt gagatgttgg tttgaattgc caagcgtgtt ggcttctaat tgacagaatt
      541 caatctccag aacccaaaaa tattttaaca gcgaggtggt tctgcccaaa cttttcaaca
      601 gaaggaggat tctagcactg atggcttcca gcacgtcctg cgattttgct gcagagtgaa
      661 tccaaactat ccccatgagc attaactggg ggtgaatcag cctagtccaa cttagaagag
      721 tcactttgag gctgcagagg gatggtgtga tctgctgaac agaggcagct actggagatg
      781 ttctcttgct gcaccttgaa tgggaacagg cctcataatg acattgttca cccatggatg
      841 gtgtttgagc tggaaacaat gtgttcaggt aatctgagag aag
//
LOCUS       KCLA01003228             859 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52609upu ultra-conserved element locus uce-7126,
            sequence.
ACCESSION   KCLA01003228
VERSION     KCLA01003228.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 859)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..859
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52609upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>859
                     /note="ultra-conserved element locus uce-7126"
BASE COUNT          286 a          160 c          162 g          251 t
ORIGIN      
        1 attacatgga ggtcatagtc attagtcgag atttgtgaaa ttttcacata taagctttta
       61 gttatcagac taacccattc tgaacaacag gcatatttgt tccatcacat ttttaaaggt
      121 gcttttttcc tcaatgaaaa aacttagaat aatagtttaa aacctcacct ccaaattttt
      181 tctgatcctg aaacaaatga gatccacagt tagagattac ttacagattt gctgtgcaaa
      241 caaagtcgta atgtcatctt ttacatgcat aggtttatac atatatggga ttttgtgtat
      301 agagactgtt ttcaagtcag agtgctgagc tcttggaaag cacacatttt actcccatca
      361 ccaaatctcc ctatatgtta gctacttaca gagaaaatgg gcagggtgaa ccccactgtg
      421 tagaggacag tggatgtgat ggtactgtca tggaacggat acttgatgct gtcatcatta
      481 cagaaaaagc ctctctgata cggttttatt ttggccaagt ttagaacacc aaggggtaag
      541 ccagctgttg ggggaaggaa aacaaaaaac agaaacaaga aatacatgtg gttaaattaa
      601 aaaaaatcat ttttaaacat atatggagga agctagtaca catgcaaatc tcagctttcc
      661 aaagtatcat gcaacaaaca gtctgcttat tatctcttct ataagtctac ttcaaaagga
      721 ctctgaggct tcccaccaga tacaagagtt cagagccctt ttatcaggaa ggtgggctga
      781 cagacactga accaagatta tgttagaaca tttgctgctc acatgactga acagttactg
      841 aggcagacaa cactagatt
//
LOCUS       KCLA01003229             735 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52625upu ultra-conserved element locus uce-6366,
            sequence.
ACCESSION   KCLA01003229
VERSION     KCLA01003229.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 735)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..735
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52625upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>735
                     /note="ultra-conserved element locus uce-6366"
BASE COUNT          168 a          176 c          207 g          184 t
ORIGIN      
        1 tcttttctac cattaaatgt tcctggttct agaggtctgt ggcttggtga gccctaggag
       61 tccctggagc cctggggaag ggtgtgtcac ctatccccct gtgtcctata gccaggccag
      121 ggggaggaaa cccaccctcc agcagtgccg gcaaagccag cctgacccga gcaaatgaaa
      181 ataatcaaaa gtaattagaa gcgtgctgga ctgttcctca gagatctgtg cgagagaata
      241 aacatgccgg agccctccga gccactgcaa aggcccatgt ctgagctgtt aggtgccctg
      301 accttgtcca cataaagacg tgatttatga agtgcagggc acagcagcag ggcttctgtc
      361 ttctccagaa gaaccaaatt actgaggtgg agattaacgt gctttcagtt gggcccattt
      421 ccagaccaag ggaaattttt tatttacatt tttttacctt taatttcctc ctcctcctcc
      481 tctctcgaaa actgcctttt ggccaggagg gacgagccca gtggtgtgtg agggcagaaa
      541 gggtggccag gatggggggg gggcacagca acagcatgat acccaccaac accccatgtc
      601 cagctttgtg gtttttcttg atttctttta agctggtatt agtgaggcag ggggggagga
      661 atgaacgtgc agaaattgca tcgccgtctt cctggctctg tcctggggta tctggaggtg
      721 tcgaggaggt ggagt
//
LOCUS       KCLA01003230             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52640upu ultra-conserved element locus uce-4515,
            sequence.
ACCESSION   KCLA01003230
VERSION     KCLA01003230.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52640upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-4515"
BASE COUNT          274 a          135 c          153 g          302 t
ORIGIN      
        1 tggcttcaaa atagaatttt aaaattatct acaattcttt tattcacaga agttactctt
       61 tatatttgaa aaatatttgt attcttttag caactggtaa ctggaaagcc attagtatca
      121 gaagcctctc tggagcctag tgcacatcta attatctttc ttagtcttca ttatttagca
      181 attgctaata aactgcatgt atcatgacac tcatgtttaa taagcatata aatttaattg
      241 atttttttcc ctctctttga agactaacag acacgaattc aatcacaagg caatggcatt
      301 ataactgcca atataacatc aggttttaat aagcctcctg tttgctgcac acatgtgctt
      361 aagactgcct ggaaaccaaa tcagtagaga aaagggatta ctttagatta ctttgaaatg
      421 tgcattgttt gaaatggcct ctggtgacca gctttcatga atggctgatt ttacttgtgg
      481 ggcatatcat ctggctcaat tatcccaggc ccttttgtat gacaagtgca tatcttggct
      541 gtgttgaaat atgaaatttt aagacaaact aaatcagatg gtgagaagta aatataagta
      601 actgtatagt attagaagtg tgtaacttag cagtaggtac ctttcttact gaaaatatgt
      661 gggaattttc ttttaaaaca ttcacagatt tgaaactaat atttttttct actatagtaa
      721 ctgcattaaa atcaaatgtg tatgtctgag aaaaggaaag tgtaatttcc aatgttctgt
      781 agctgtgaaa tgttattgga gtttgttgta cagagaagtg tgagttagca agtgtgcatc
      841 ttccttacaa gccactgcag gatt
//
LOCUS       KCLA01003231            1035 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52654upu ultra-conserved element locus uce-4324,
            sequence.
ACCESSION   KCLA01003231
VERSION     KCLA01003231.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1035)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1035
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52654upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1035
                     /note="ultra-conserved element locus uce-4324"
BASE COUNT          344 a          152 c          214 g          325 t
ORIGIN      
        1 ttatagtagc cagattttta aaaactgaga ataaaaactg gaaaaaagat gctttttctt
       61 aaacagttgt tactgaattc tgaaacttag tctgacacct ggacactcat tttcttctgt
      121 gataaggaaa ttaactgaga gtctcttatc accgttgaca aactttgctg taatggtgat
      181 cataatacga aaaatttacc tgtgtgacac ctgcagagaa gctgtgattg ccagctttca
      241 ggcaaatatt atgtaatagt tttgctaggt aagctgttag aaagcataaa gtatgtggga
      301 agaagataca aattgctact tatttgaatt gtgtgccccc tcttaaagaa atagttctgt
      361 ggatttctga gcaaataaaa atattcaaaa ctactgtact agagagtgta tccttgtggt
      421 gaatgttaaa ctgtcagcag gattttcagg tcatttgaca aaaaggatac aggtgcagta
      481 gctagcagtg aaggtgactg ctagtttcat caatcacttt gcctttcttt aagttgatac
      541 ataatggacc ccttcaatca gcttccgtat tctttgtcac ttgtttagga agaagaaaaa
      601 agagggtaga aaggctggac tttaaagtca aggttataaa atgaattgtt acttatttac
      661 acagggtaag gaggataagt cagtgtgaga aggggctctt cataaaatgt cgagtttgtc
      721 aatgggtgat aatatgcatt ttgaagcttt gtgtagacct tgagcagtga cagttgttgt
      781 cacagcagtg attctgaaca agaatttaaa attaagacat tgtttagtga cagagacacg
      841 acatgtgcca gaaaatgtgc taatcagtgt ttgttttatt atcagagggt cacagtaaat
      901 gatgaagttt atttaactgc aaaagcagaa ttataataga aatagaatgt gaattcgtac
      961 agcatctgga aggctatcaa taccattttc ttgcgtaaca gatattaact atgcataaca
     1021 attcaactcc attac
//
LOCUS       KCLA01003232             232 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52668upu ultra-conserved element locus uce-4254,
            sequence.
ACCESSION   KCLA01003232
VERSION     KCLA01003232.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 232)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 232)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..232
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52668upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>232
                     /note="ultra-conserved element locus uce-4254"
BASE COUNT           91 a           35 c           40 g           66 t
ORIGIN      
        1 aaaagtactt aaataatagc ctaaaatctg aagaattact ttaatacttc aataaaaata
       61 acccaattca aaacattttc aaggaaacag agctccttgc tctaggctac cgaataatgg
      121 ctgaaagaaa gtatatagct tgtcacttct gattagagaa ctgtgcctct gtgctttgaa
      181 tgagaggcat gtctggtaat aggaagtgca gatattaaat ttaataaaag aa
//
LOCUS       KCLA01003233             766 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52682upu ultra-conserved element locus uce-7530,
            sequence.
ACCESSION   KCLA01003233
VERSION     KCLA01003233.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 766)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..766
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52682upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>766
                     /note="ultra-conserved element locus uce-7530"
BASE COUNT          236 a          140 c          135 g          255 t
ORIGIN      
        1 attcatgtta tatttggtca tgaacaacac gtgatgtgac tgcatatatt catgaaagta
       61 cattacaact gtactttttt gttataaaca ttttaacata taaaagcttt tcaaatcgaa
      121 ggtgaaagca ttttgttttt tgaagatgtg attgccaatt atttttgcac tagtgcacat
      181 aacaggaagg acagattctt aggtatgagt tatatattcc tgtacaaaat aattgtatat
      241 tctatgaaga ctgattcttt ttctagagaa atatacaaca acacagggga aatcttgtac
      301 cagcagcata actgaagtgg caagatacaa tattagaaaa acagagctac tttcattact
      361 gtgatgctgt gtgtcacaat gtctctcctt aatgaacctg tttgcaataa gactctgggt
      421 gcaaagaggc tatttagaga gtctattgtg tctatagtga gtccttcaaa tatcttccca
      481 ccattagaca tgccgcattg accaattctg tcctgattgc tgttcttttt agtgtcaagg
      541 gacattcttg cccagacaga ccgatggatc agaaactgca cttcataaaa tgtttacact
      601 gtacacacat tcacattgat acaagcaaca aagtaccaga tcacacagca cgttgaatgt
      661 gccagtgtca tctaaaggct tatgactttc cagtatctac aaaggatttg ggttaaactt
      721 tgtttctgct gcctgcttgt cattctaaca gtttttttca cctgtt
//
LOCUS       KCLA01003234             868 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52698upu ultra-conserved element locus uce-389,
            sequence.
ACCESSION   KCLA01003234
VERSION     KCLA01003234.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 868)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..868
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52698upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>868
                     /note="ultra-conserved element locus uce-389"
BASE COUNT          244 a          168 c          188 g          268 t
ORIGIN      
        1 atggaactgt taccattcga aggatttttc cccataacat cagttccttg cagtttgggg
       61 ttaaacacag tgaaagcgag gacttgtttt acatgaattg catactggtc agcgtttctg
      121 tgaccacttt ccagcaacag gattttctac agtctcattg cacgctattt ggtgggccca
      181 agttcagaat aaagaaccca ccccccaaac caaaaggggg acactgggaa gtgattgtct
      241 tgaaggaatg gaagacagga tttcttttct tttaacctgt gttttcagtc aattaaaatt
      301 tgtactcggg gcttttcggt ttgaagccac ccctgtgtct gtgatgagca atccttcttg
      361 tttgtgcagt cattcattat ctccattacc aagaagagaa tagaggacaa ttacattgtt
      421 tggacgaatc agagtgttag gaggagtatt tatcatggtg gcagagtgca gcacctgaca
      481 gcgcacgatt gatggccagg aatgagtgcg agtggccaaa gcagcctcat atgatgcaaa
      541 ttactgactg tggattccaa tttatcctgt tcatttttct tgcctttgct gaagactatt
      601 agtggttttt gaagcagtga aggggtcatt actaatgtgg gctagaagca ggagggggaa
      661 ggaggggaaa agccttctgt aattacacag ccttcaagaa aaggctgcgg gcccagccaa
      721 aaaagtgtca acacttagca atcagaaaaa tttattttca ttttatcctt aacccatatt
      781 aactcaacat tatcatcttt ctttgttaat attttcagaa tattaaatgc ttgacttcta
      841 tattaataca gatctcttta accctttt
//
LOCUS       KCLA01003235             479 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52714upu ultra-conserved element locus uce-4889,
            sequence.
ACCESSION   KCLA01003235
VERSION     KCLA01003235.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 479)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..479
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52714upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>479
                     /note="ultra-conserved element locus uce-4889"
BASE COUNT          143 a           89 c          100 g          147 t
ORIGIN      
        1 agtgacagga gaatccttgt gagacaattg atgtgcacaa ttgtagccaa aatctgaatt
       61 caccagaaac caataagctg taatagccac aaccagctgt ccatagcctt gtctagaatg
      121 gctttaaaca aaaaatataa agagccatgg acagtctcct tacccctgtc cagaatttga
      181 tgtaaacaac atctatagaa actgggattg ttaagaaagt ttatccatat atctggatag
      241 caataaaaag cgtttcctag gaaactgtaa aatcctgtac caagcagtgt acagccgagc
      301 tgagaggaac attaggttga tttatatttt caaggtacaa ctttgcatga tttctttcag
      361 atcctgtgat aatgtacaag gagagcacgt gtgaaggtcg gggctggttt cctttgtttt
      421 gtttgcttgc ttgctttctt ttctgaactg tctcttgcgt aactcattgg tctgggttt
//
LOCUS       KCLA01003236            1149 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52729upu ultra-conserved element locus uce-2485,
            sequence.
ACCESSION   KCLA01003236
VERSION     KCLA01003236.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1149)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1149)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1149
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52729upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1149
                     /note="ultra-conserved element locus uce-2485"
BASE COUNT          384 a          214 c          224 g          327 t
ORIGIN      
        1 gtcagtgatg aggtggtatg tcactgacct tagctactga gctgatgaaa acaacgacaa
       61 gacaaaggca tacagctcaa tcactggtaa tcaatttctc tgtgactcat tgaaagagac
      121 agcagaaaca atcttgtttc tatgaaatca tgtggatctt gaagtgttta gacagcatct
      181 taagctcaca aactaatgaa agagatgaga aaatgataag atggtatctt tctttgacct
      241 tttgacatac aggcctgctt aatctctaat cttattgtcc cttggggttt taaaatactg
      301 actcaattcc tcaggcaaaa acatattgtg gtgtcatctg aaagacaagt gcctttttta
      361 aaatgtacag tacaatgtgt cccaaccttt ttcctctgta cttgcagaaa gccaaagtca
      421 tcacaaacag cttttcaaaa taaaggctca gagaagagtg aggaagtgat acgggactgt
      481 gcatatgcaa gacagtccgt atatttcaaa gttttagcaa gtctagcaca agatgtccaa
      541 atgttttctc tggctatatc ttcagaggct aaactgtgat taatagcatt gaaagaaccc
      601 tttgaagcag gattggtgac atcaaagccc taatccatgg gtggcaggat ttttataatg
      661 agtgggaagc attttaacac atttcaaagg atttacagca tgaataaaca ataggcctct
      721 gcagatgtac cacacacctt tcagaaccag aacacataaa taagtgtcca ttttaattta
      781 aatgtaaata aagtgttaac acttctttca gatgcaaagt gccctgtttg cattaactcc
      841 agtgtttagc tgtttgcttt acagaaagcc agtaactcta aacagtcttc agagttctgt
      901 taaactatac attttgtaac tgataaggaa gcaggatggg agaaatgaaa actgagagca
      961 cattgctagt aataattcca taaggtggca gagcaaactc agtggccact gaaaggaact
     1021 ttcactccta ctttactcca aagagaagta ccaggaaagc aatctgagga tgagcactct
     1081 aacacagcaa tgccattttt cagagcagta acaacattaa gatacttctc ttttggattg
     1141 atggcattg
//
LOCUS       KCLA01003237             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52759upu ultra-conserved element locus uce-2437,
            sequence.
ACCESSION   KCLA01003237
VERSION     KCLA01003237.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52759upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-2437"
BASE COUNT          243 a          236 c          219 g          200 t
ORIGIN      
        1 aggtcctgca acttcacagc aataaaacat caaagcaaaa aatctctctc actgctatgc
       61 tctttaaaac tcaagtgtct acggtctgcc tcaggcaagt tactgctcag tccatttata
      121 agcaataaaa cactagagac ccctccagta caatacgaga gatctcgtct aacatgggga
      181 tagaaagtag agaggtaaag ttttacgaaa ggtggctgta catcgctctt gaagccaatc
      241 gccgatcctg cacaccaggt gaccttcctt gtcatcttcc acgctcctgc tgcgcttact
      301 gctctgttgg cttctctgta cacaccgccc cccgtaaacg gcataagcgg gcagttccga
      361 gtggcaggat tgtgttgtca ttcaaaggtg gcggtggttg gattttccag atcccagcat
      421 ttcataaggc acacagcata tataacgata gggatattgc aagggacacg tcaagacaca
      481 aactaacttc aaaacagaaa agtcatcaac agctacaggt acgtaaagaa aacttgcttg
      541 ttagctacgg cctccggtgc aggaatgtgc ccccctcttc tcgggaggaa agcagcagat
      601 gggaagcttc agggttaagg cggcttggca tgatgctgcc acgccccaca gaggagcggc
      661 ttccccagca gcactggaga gctgccagag gcacagaagg agggctttgc tagaagaacg
      721 tcatttcatg gtgaaaggga cacaagctgg tggtttggac aagctgtcca gtagaagcca
      781 gagtagcagt tgtccctctg tggaaacctg ccctctggta gcaacccaga gctgtgccct
      841 gtgccggctg cgaaacccct tcctttcttg acaggaccat ctgccacact gaccctaa
//
LOCUS       KCLA01003238             919 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52775upu ultra-conserved element locus uce-463,
            sequence.
ACCESSION   KCLA01003238
VERSION     KCLA01003238.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 919)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..919
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52775upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>919
                     /note="ultra-conserved element locus uce-463"
BASE COUNT          211 a          247 c          230 g          231 t
ORIGIN      
        1 aaataactcc cctgctctct ccattgcgtg ctggagacgg cgccggggcc tttggctacc
       61 tcacggtgta cttggtgctg ctctttattg caccagaaca ccccgtcgtt caccagccct
      121 cgacgttacg ggacgcccca ggcaccgagg cggcaccaac ctccagccag cctgtcggga
      181 caggtgccgc tcccttcccg gcggccacgg gtggctccgg aggctggtgg cagagcaggc
      241 tgctttataa ggatgaatga agatgaaaag caagacaaat agaagtgaat gaggcactgc
      301 tttacgtgat tcatgatagc tcgcagtaag cctgttagcc tccgcctggc tcccttctcg
      361 cagaataatg gatagttacg ccgtgtacag tgacattgtc aaaccatcag gaattgctga
      421 ttatagtgct aaatattgat ctccgcttca cacgtgtcaa aattctttct tcccttaatt
      481 agaacttccc taagcaccgc gcaagaacaa accgaataga tcagatctcc gtgaaaggga
      541 gtgtgatacc agcatataat tgtgacctct tgtcgtctcc ttctctctgg agttttgaga
      601 tgactcgggc tgtctatcct gcccttccca gcacatgtga taatcatact catttttccc
      661 aatctaacca taggaagatt ttcaaggctg tgcttttcat catttccacc cgccggggct
      721 gcagtcagat ggcagggaaa cttaaagtgc cagaaggtgc ctttttctat ttgtttgttt
      781 cacggtacgg cgcaccaggc agtgacctgt ggcgggggtg tcgcgcacga cgcgggcggg
      841 ttcacccaat caaagggagc tttaaaatta acacggatcc cttcgttcct tcgtgcggga
      901 tcagggaagg gcaatttaa
//
LOCUS       KCLA01003239            1013 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52791upu ultra-conserved element locus uce-4659,
            sequence.
ACCESSION   KCLA01003239
VERSION     KCLA01003239.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1013)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1013)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1013
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52791upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1013
                     /note="ultra-conserved element locus uce-4659"
BASE COUNT          375 a          187 c          182 g          269 t
ORIGIN      
        1 taaatctgtt caactagaaa aatatattca gtgaaatgct tactgggaca gcgagttgtt
       61 ttccagaaag tcttggcaga caaaactgtt ctatatgaaa actagggtaa agcaatttat
      121 ccacttacac atggtgcatg tggttaaaca gtgaagagag ctgcaacctt tcccctttcc
      181 ctccctaaaa aagttctaag agttcattgg taagaactgg actctgcaga atggaatcct
      241 taactgccac cactgcaaga cggaaagagt taaaaaaagg ttggaaatag ctcttttgaa
      301 acacagaaac taaagggtta cctgctaccg ttttactaaa aattgtacaa aattgccact
      361 tttttttcaa ttagaaacag ttcctatgac cagaattcct ataagacaat agaaaataca
      421 tcaacagaat gatagataaa tccatcctcg gaagcaattg ttatgtgtta acttacagat
      481 gctgtgctag gacatggacc gccaacactg gattaacctt gcctataagc tatgtttctg
      541 ggaggaagag caagtacacg gttcacaaat ataccaaata acaaccaaat ataccaaatt
      601 tcaacctgat ggatgccaga acaccagttt ttggaacaaa tattgaaaag aataaacagg
      661 tttatcccgg ttagctccac atttaccatc actgaaatga aattacaaac tggaacaatg
      721 aaacagcatt ttctctggtt tgaggttttg ttttcttttc ttttaaacaa agcatttaag
      781 acaactgtaa aaagcaatct tacctggtaa atgttcttct accataggca cggggaccag
      841 agaaccaaca aaggattaca gaaataaagc taatccacta gtgattaatg tatccagtga
      901 atctacactg cattgatagc acaatccagg caaagcaatg ttggatacat tgaaatcaca
      961 aaaggaaaaa gggactaaaa atggtagaaa ctggtagaaa attgatgtga aaa
//
LOCUS       KCLA01003240             709 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52806upu ultra-conserved element locus uce-6907,
            sequence.
ACCESSION   KCLA01003240
VERSION     KCLA01003240.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 709)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..709
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52806upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>709
                     /note="ultra-conserved element locus uce-6907"
BASE COUNT          204 a          140 c          146 g          219 t
ORIGIN      
        1 ccccgatcag ccactgagta acaagacaac aggactattt cactgtgctt cgtgtgattt
       61 atgttcacct caatggcagg agttttttac actagcgttt caccttgtaa cagacccagt
      121 ttgcacccag acagtagtct cggtgatgtt ttggatagca gagtttcctt gcgagagata
      181 cgttgctatt ttatatagtt cttgatgtgc agcctaaatg aagtctctga aggaggatct
      241 gtcttttgct aacagccatc atttttatat aaagctgaag gtattcatgt tatgtcttca
      301 tcttctgtat ctcaacgagt aacaatatca caactactcc ctcctgacaa ctatattcat
      361 ttctcattaa agatatttca tgttttattc aggaatttaa atgaagctat cagagcctgt
      421 aatagcaaca gtttgggata attgtatctc attgatggca gcctcaagag ttctaattaa
      481 tatatattta gctccctggc tgtctttaga ccaaacgcct cagtatgaaa gacagggaga
      541 ggcgataagg ggagggggag gggaacagac tccaaaataa cagcccctct ttggaatttg
      601 gacaggaaaa tctgtgttgc aagaaggaac tgcatgcttt gggattcttt ctcttgcggc
      661 atttcatcca gaataacttt tgaggtacag aaaccttctc aagaaaaag
//
LOCUS       KCLA01003241             751 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52822upu ultra-conserved element locus uce-2864,
            sequence.
ACCESSION   KCLA01003241
VERSION     KCLA01003241.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 751)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..751
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52822upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>751
                     /note="ultra-conserved element locus uce-2864"
BASE COUNT          264 a          105 c          171 g          211 t
ORIGIN      
        1 tgtatttgtt agaggccatg tgaagaggaa agcagacaat gaaataggaa aatacaagta
       61 gctcagactc aacaaactgt ttagttgaaa atgaatgaaa aataaaaagt ctccgataga
      121 gcaagtagaa tatgttctgg acctgtattt cctgtgacct acaggatttt aagagaaaag
      181 cttcagaatt ttattggcat tgctaccgtt agacgaactt ttctttcctt tctcctcaga
      241 atggggtcag ctttaaagag agcattaagt gaatggctaa tggaattaag ggtataataa
      301 tagaaggata tagtgagaca attgtattaa caagaaataa atcatgttga gtgtaaggta
      361 agtgtttttt aattgattga tggggagaat gttccatagg tttttgggag gactgacagc
      421 cacttgcctt cccatctata ataaaaagcc aaaagagaaa aagagataag aaaattatat
      481 agtggggaga taaattattc agtgaagatg gccattttgt gctgacatca ctaatgtgaa
      541 aaagcattaa atctttgaca caggctgcat tcctctgagg ttatggttgg tggaatgaga
      601 tattgggtat tacagctgga acactaaact tcctctgatg ccttaagaga ctttccaagg
      661 tgatctagaa aataaaaacc cagtaaaagc tgttaccaag ctgttatggc aaaagcctaa
      721 aaaccaggca gacgtggtgt tctgggagat g
//
LOCUS       KCLA01003242             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52837upu ultra-conserved element locus uce-4261,
            sequence.
ACCESSION   KCLA01003242
VERSION     KCLA01003242.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52837upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-4261"
BASE COUNT          299 a          173 c          127 g          220 t
ORIGIN      
        1 attcagacca taccaaaacc attttagtac aatactactc ttcaattatc caccaggtat
       61 tttgaattag tactgatcta attgcaatta gaaagcaagc cactgcagta taatttctac
      121 agaagataac catattatac aaaaagtttt catgatacac cagtgtgctc taggctctca
      181 cagaataagg acacaaccta cagcctataa tgaaaagtga aagagactta tttcaaatga
      241 gagataagag tttggtatgg cctcagcact attaacatgt aaagaagtgt cctacagaat
      301 ttaagaaaaa tcccacagac cccagtccaa ggctctgctg cccacgaacc acttctaagc
      361 agagaagcca catcacacag tctgactgcc atgttagttt ggagttgccg tctgcaatat
      421 ggacacaaaa agtaccgtat gttagattag caagataatg caacaaatca ttttgtacaa
      481 atttacagta attgtattaa tattcccagc atgtccatga agtgtgactt aattggactt
      541 gaggcaattc caatctaatc tttccaactt gagttctaaa ttcttacatt aaataaaata
      601 agcatcttat ttcaaggaca atacagtctt gttacccctg catctacctt gaaagctacc
      661 ttcagaacca cagcatacct aaaaggaacc acaaaataaa agaatcttca agactgaaga
      721 gaaaagaata gagacagtga gttccttttc cattagcaca taagatgatt atgcaccatg
      781 gaaaacaaga tcacattatg tgcctttccc agtccacaa
//
LOCUS       KCLA01003243            1017 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52853upu ultra-conserved element locus uce-1823,
            sequence.
ACCESSION   KCLA01003243
VERSION     KCLA01003243.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52853upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1017
                     /note="ultra-conserved element locus uce-1823"
BASE COUNT          258 a          248 c          240 g          271 t
ORIGIN      
        1 tggctgtgag ctgccttttg ttcctggcaa gatttattcg gtccttctcc gcacgttgct
       61 cagcacctgc agtaggggaa gtcattaacc agcagtatct gctccgaggt acccggaaag
      121 ctggaagcag ataaaagccc aaaactcctc aaaacggagc tctcagtgct gggaagattc
      181 ttttctttat agcctgggag aaagggtgga tgagtcccct acgtgaagct aacctttggc
      241 tgttccaaat aaaccggttt gaaaggtacc tctgcacatc ccaccgagca caggtactga
      301 cgggcaggaa aggctgccat ccattcgtgg cagttcttac tctgttactc cttaaatttg
      361 ctaaaagcca cggagcacaa ccgctctatt tttgaaaaag gtttcttgca gcgccggtct
      421 ctcccagctt tttgcgaggt acagtagctg cagctttgtt tatctggccc ctacacaata
      481 ttgtcaggat gcatttccat tttccaagtg actgctgcca ctgtgccaca atctgtgctc
      541 atttctcgag cagctaaacc ctttgacact gtggttttta attaaaatta cattaaactt
      601 aatcagccag aaagaggctg ctgtagaagg caggtttgat tgcaacctgc aaagggcgct
      661 ggggctgcca actcgctaaa gatgtgccgg cagatgccaa gctgcttgtg tgagccccat
      721 ggtcacaaaa atgctacgag aggtcagttc taccgtcact tttttctagc actgtcacca
      781 aactgtaatg cgtgacatct cttgatggag ctcaaggaag gaatacacgg ctcataaagc
      841 aacgtactct gcttcgtctc tcaaaaacag agtcacagga aagatgtagt agggacagcc
      901 tgcaaacggt aaccctgtag gccttgagga atcaaaatgt gcagggggtc acgagatcgg
      961 gccttgttac acaaatcctc ctgaagattt tctttggagc ttgtttattc cttgttc
//
LOCUS       KCLA01003244             387 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52868upu ultra-conserved element locus uce-4356,
            sequence.
ACCESSION   KCLA01003244
VERSION     KCLA01003244.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 387)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..387
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52868upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>387
                     /note="ultra-conserved element locus uce-4356"
BASE COUNT          124 a           85 c           88 g           90 t
ORIGIN      
        1 tggtgcgcaa acttcccccc tgcaatcagg atacagcatt tagaatagaa agcttacctt
       61 gaagaaagtc atggttgctc catcttcaac tgccccatac tctatctttg tctgcttggc
      121 caaatcatca gcagaatcga taggggattc catacgttcc actgtcagaa aggcggctag
      181 attagcagtg tacgaggaaa tgatgataag tgtgaaaaac caccaaatgc ctcccactat
      241 cctggtggag agggctttgg gcatgagctc agaacctaac gaaaaccagg ggaaaaaggt
      301 gaaaccagtg cacacaaaac aataagtgtt cagcactttt tgtcacagtg gggagatgga
      361 atcactgtgc aaaaaaatct ttaagat
//
LOCUS       KCLA01003245             971 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52884upu ultra-conserved element locus uce-7298,
            sequence.
ACCESSION   KCLA01003245
VERSION     KCLA01003245.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52884upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>971
                     /note="ultra-conserved element locus uce-7298"
BASE COUNT          289 a          200 c          187 g          295 t
ORIGIN      
        1 gcaactcacc ttggttaatt aattagtttc agttaaatta ctttcacata tggataattt
       61 tcttttcgcc actacccagt accccatttg attaaattaa atcaagcaca tagtcaatca
      121 ccttcctgcc acgaaaaaaa aagagagaag tcattgctgg ggtttctgtc atttgcaaat
      181 tacccagggc agcagccgag gaagcgcttc atcctgaggt atggctgctc agcgcatgta
      241 aggcaaaagc aatgctgcat ctttaagcag gctggaataa ggtttcttta actattaagc
      301 ctaactctaa gatctcccct gctgtgagcc ataagttgct tgtaggcttg ttctagaggg
      361 taataagtat tgttgtttag caattgtgtt gttgaaattc agctccacta tgtctgacag
      421 tatttatcta aaatactttc cctggtgcgt gctcaagttc cagtaaaccg tgtcttattg
      481 tgcgaccttt tcattttcca gtgaaaaggg atcagctcgt cagataaaag ctacaagctg
      541 gagtacagga aaaatgcgtg ctcagaaaat ccgagcatga ttgaaaacaa gatgtgttaa
      601 atcaatgcag tttatcgcct gcctattcct ggcaattgct gttctaagct cattctgagc
      661 acacactaga tgataaaagt atagtgtcac agtgctcact ggggtgtgag ggcagggaaa
      721 catgtttatc agacaggctg ctatgatttt ttttaccctt caaaacagtt attgtcaaaa
      781 tttttgcaag aatccctgaa caattataga agcaggtaac tgctgctaaa tacagagact
      841 actgagagcc ctcaatttta catttctatt taaatgctac acactagcaa acaacaaacc
      901 cacctgtttt aattttaaac catttgctgc atcattgagg atatcgccaa aatggccctt
      961 ttgctttcaa g
//
LOCUS       KCLA01003246             816 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52899upu ultra-conserved element locus uce-494,
            sequence.
ACCESSION   KCLA01003246
VERSION     KCLA01003246.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 816)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..816
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52899upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>816
                     /note="ultra-conserved element locus uce-494"
BASE COUNT          257 a          156 c          150 g          253 t
ORIGIN      
        1 taacagattg ttaaatagct gtacctaata caggggttta ctctcatgac atagcattta
       61 taaaaggcac acaaacagat atggaagtac acatgtatgt acacacacag aataagcttt
      121 taaaaaaatt ctggactcag tttttaaaga tacaagagta tagctcatgg caaaaagaca
      181 caaaattgaa ctttccaaga tcagtactta acataaaaat ttcatcacaa tctttatcat
      241 cttgcagcgg ttgcagaaaa ggcctaagct ctctccacct ttaacttcct aaagtcgcct
      301 attttacctt caaatctgat gaagtgtcaa agtcatttac cagtaatgag ttctgctgca
      361 aattttattt tgcttggaat ttaattaatg ggccaaagac tttccattgt gatttgagca
      421 aatgaataat aaatcaagaa aggagatttg tcagggaagg aacatctgtt tcttacaagc
      481 gttacaacat gactacagct cggctgtgca ttaccagcac aaagacggta ggagtcctct
      541 cctctgaagc tctcttcatt tattgctcca ctgaaggtga acagagagca ctctaatggg
      601 cctctggtgt taataaaagc ttttcgcttc cccagttttg ctgtggcccc ttccttttgg
      661 gtgctactgt ccttagtaca tggtttgttg gtcaacgtca ggattctgca gtgtcagtgc
      721 tttattggat gattaataag ggaaagacaa attcataagc agaaacaata tgaaattgcc
      781 atcatattag cgttaactgt catgcttttt attttg
//
LOCUS       KCLA01003247             513 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52914upu ultra-conserved element locus uce-5026,
            sequence.
ACCESSION   KCLA01003247
VERSION     KCLA01003247.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 513)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..513
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52914upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>513
                     /note="ultra-conserved element locus uce-5026"
BASE COUNT          152 a           96 c          124 g          141 t
ORIGIN      
        1 taataaatga gataaagtaa gcaagaagat gcctaaacca gtctattctc cttttctaca
       61 cttcagctgg acaggcttga agaaaagcag aaagagacat atcggcgtat gctggaacag
      121 ctcctcttgg cagaaaagtg ccatcgccgt acagtttatg agctagagaa tgagaaacat
      181 aaacatacag actacatgaa caagagtgat gacttcacca accttttgga gcaagagcga
      241 gaaaggtgag tacctgagac tgtgctccag ggtcgccgag gttcaacaga aacgtggtct
      301 ggtattatct gtgtttaaat gaccctaaac atgtaagtga tttgcaaatg tcggttgact
      361 cgtgctaggc aagcctagag ctggaggagt accatagaat gttcctgtag tgtgtactca
      421 aatgaagata ggggtacgtt tttaactact cacgcctgtt ttgggttcat ctcctggtag
      481 ctttttgtca tctgttattt ttgttggcta agt
//
LOCUS       KCLA01003248             896 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52930upu ultra-conserved element locus uce-7058,
            sequence.
ACCESSION   KCLA01003248
VERSION     KCLA01003248.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 896)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..896
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52930upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>896
                     /note="ultra-conserved element locus uce-7058"
BASE COUNT          296 a          177 c          174 g          249 t
ORIGIN      
        1 tattaaggta atgttatccc ttcttattat gtatctctat gaacggctga cccaaaccct
       61 gacaaagact gcagggcttt gctcagtaag atcaagatca tggccagaag aatccttcct
      121 cctagaagac agtgtagttt tgttagtccg aggatcagca atacctttag caccattctg
      181 tctgcacaca gcaatattca gacgtgtcct gacattgcag ttgcagattg ttaccaacgc
      241 ttaaacaaga tcacaatttg ttccagagtg ataaaatgac cctatgaagt gaactacact
      301 gtgaaaaata aatgtaaaat actgtgtaga tgcacaaatg attatttcat tatctagcca
      361 atgtatgaac gacagataca aattgttcaa atcatagagt gatgaaagag taatgaacaa
      421 tgggctcttg aatgagcaca ggaagaaaat aatgaattgc agtttaaatg aaatcagggc
      481 tcaatggact ggatcacaga ctgtccttca gacataggaa ctctgcatta gttaaacact
      541 gtcatttgga gaaacgtcct ttaagagaaa gaaatctaaa tgggtcagag aaaaaggcaa
      601 acctaatgca tgtggccact ggcttatagt gagcaggagt ggaacattcc ctttcctgct
      661 gctttgctaa ttcacatgat aaactactag aaattagcag ttcgcactct gcaaagtcac
      721 aatccatttg tacattggcc ttttttctgt tctaatcttg cccttccttt gctactctac
      781 cttaaggcaa tacctgatct cttacacatc atatgggcgc agaatgaaga ccaagacaac
      841 aaaaccttct gggaaagaaa atgtttgtta tgtggaagtg acatgtgcaa aagctc
//
LOCUS       KCLA01003249             858 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52946upu ultra-conserved element locus uce-1972,
            sequence.
ACCESSION   KCLA01003249
VERSION     KCLA01003249.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 858)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..858
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52946upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>858
                     /note="ultra-conserved element locus uce-1972"
BASE COUNT          245 a          176 c          200 g          237 t
ORIGIN      
        1 gagaatgtct tcttgaagcc gtaggttgtt cccagtgatg gggctgttgt ctggggaggg
       61 ttttgcccca gctttgggct gcaggagggc agcagggctc acctgtcttg ccaaatggga
      121 tggagtccga ttgacccagt ggcccgaggt cccactttgg ctgccaccct cacagttcct
      181 ggccatgggg ctgcccggga tacctcagcc ccttgtcagc ctctcgtctc gcagattgtg
      241 cgggaggcag gctgcctttt aatccaagtc agatatggac caggacacat cctcaatgca
      301 actaactgtt tctaaaaaaa agaccatctg gtaattgtct tcctttagat cttcccttaa
      361 ttatgctttt aattaaagat ggttcaaggc attggaccac atgaagggca gtaattacaa
      421 attacattac aaacccaaca gatgtagctc tatctgctgg gaaaaaggta ctggaataaa
      481 atttgactaa actttaggat aaattaatcc actgccttga gaacagaagc acatttttta
      541 ttatgcagac tctagccagg atttaagttc tctgtcatga ttgttttcat atttctttga
      601 catctattga tttggaggca gctgcaaggc tttgtcacaa gagagaagag cagtcacaat
      661 atattagctt gatggcataa ctcgaatatg agtaggaagg atagaaacat gacagggagc
      721 cacgtgaccg actgatgggt ctccaacaaa ataaagaaat taatttttaa taaaaagctt
      781 taaaaatact gcagctagtg caatggcgag gggaatgata gaacttgtta attatcaagc
      841 atcggatcct ctgaaatt
//
LOCUS       KCLA01003250            1110 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52961upu ultra-conserved element locus uce-810,
            sequence.
ACCESSION   KCLA01003250
VERSION     KCLA01003250.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1110)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1110
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52961upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1110
                     /note="ultra-conserved element locus uce-810"
BASE COUNT          364 a          235 c          195 g          316 t
ORIGIN      
        1 aaggaaaaga ctcaagcata cctgcaaagg atccatacca cattaaacct tctggctaca
       61 agctacagaa gacccagtca tttcattaac cccacagcca atcttgtcac agcagcagca
      121 cccctcaacc atacaactcc tgttaaaaag gcaattcttc aactgcaact ggcctacgag
      181 tgataattaa agctatttgc gacatgtgta tcttataatg attaacttgt cttcagtcag
      241 ataaacaaat aacctgcacc tgtaaagact atttcctgaa ggtaaaacaa ctgtttagga
      301 aagatcatgc tggcaaaaca gctgcttgca ttccggagag gaaacaaggt ggtacctttc
      361 aacaaatgcc agctccagtg ttttatcagc tctatctcat taactggaaa caaggcttaa
      421 atgctttgtt tataaattat gattattcct gattgcagca gttactgata gcaccactca
      481 tttgcgatgc aactctttga atttgtttaa ttacaatctg aaacaaggca gagaagatta
      541 attaacccac ctggctggct ggcacatagt cctggctcgg ctctgtcata ctcatataca
      601 tgttctcacc gtcaaactgt aaaggaaata atagtaaaca tcagaaaact tgaatatttt
      661 tcagcactga ctgaaaaaat cagtgtccat aaaataatat tacagcctgg tttcagccac
      721 ttctaattgt gtgtatgcat cttgtctttg atgttcctgc tgtcatcctt attgaccctg
      781 gatgtcagtg atttggagta attagtgctc tagtaattac agctagcgag cacgaaatga
      841 atggtttcct ttcatctgca atctgtttta aaacaaaatg cctcattttg tgtaccacgt
      901 atacgtactg ctgctggttg taacagagta cgaagcaaat tgcacagtta ctgagaaaag
      961 gaagatgaga atagaaactg cgttgaaatg catcttaatg gatcccaact ttagcttctg
     1021 agcagaacaa gagttgaaat ttcaaaacaa attaaacccc ctcctattgc tacattctca
     1081 aatgaaaaag taggaaatac atgtgcagac
//
LOCUS       KCLA01003251             435 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52977upu ultra-conserved element locus uce-609,
            sequence.
ACCESSION   KCLA01003251
VERSION     KCLA01003251.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 435)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..435
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52977upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>435
                     /note="ultra-conserved element locus uce-609"
BASE COUNT          134 a          119 c           88 g           94 t
ORIGIN      
        1 aaggaaaaaa aaaaagaaga aatcatttga ttttcattgc cctggagaga attaaatacc
       61 cccaaggaaa aattctggta cattctctgc acacatttac atgcagccag tgaagtaaac
      121 atttccataa ttgctcactt cagaacacgt tacccagttc ctaggtacaa taactgtcag
      181 gagtcaatga ggaataaaga attttcctga atccttgcac ataacctgac tagcattaat
      241 aactccgcag tcgctgagaa gttaaggaat ggattactgc caggcagcga ccttgctccc
      301 cacgctcggg gtaagacgcc tccttcccag ggccagtggc agcacccaga accatctagc
      361 agacatccgc gggctccgag ctagcgctaa ccgcgtgcgc gcctctctcc gctccaaagc
      421 gtaaagcccc aacta
//
LOCUS       KCLA01003252             657 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 52992upu ultra-conserved element locus uce-6643,
            sequence.
ACCESSION   KCLA01003252
VERSION     KCLA01003252.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 657)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..657
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="52992upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>657
                     /note="ultra-conserved element locus uce-6643"
BASE COUNT          234 a          138 c          110 g          175 t
ORIGIN      
        1 tccagctgca cctctcaaag catggtcaac gagtcttaac agaaaactag acatgcattt
       61 caactaatca aaaccaaaga gcttcaatca ggcatacgaa cctgcagcca ccaaactgac
      121 aacttctcat catccatctg atttttgtta aacggtatag aagaaagata tgcagtgacc
      181 ctctagctga ttgaatgtaa aacagaggag tacaaaacgt gttttgtgaa gcagaacttt
      241 atgtcaggtt aaagctagac acatctcttc cacacagact aagctcgtca attgtgcacc
      301 taaaatttta tgggaaagga tactgtttga tgcagtccac cagtggtcca taacaacagt
      361 cattcacagt acactgcaga caaataagag aagtagtata gtgatgggca atgacaaaac
      421 cattacagtt aaacagtatc ttaaaacagt aattactttt cttcaaaagg gctatcagat
      481 gctgctcaga tttaatcaca gaaaacaaaa cctgcatgct tttattcact ataaaagcaa
      541 gctattaaaa agtgaaatgc tcccctcaca aatactgctt tgccatttat ggtgcaccct
      601 gacctcaatg atagtttacg atgacagtaa ttaaatgagg tttaaaatct tttactc
//
LOCUS       KCLA01003253             925 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53007upu ultra-conserved element locus uce-699,
            sequence.
ACCESSION   KCLA01003253
VERSION     KCLA01003253.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 925)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..925
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53007upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>925
                     /note="ultra-conserved element locus uce-699"
BASE COUNT          326 a          181 c          158 g          260 t
ORIGIN      
        1 aaaaaactaa tagccatgat taatgagaat gggctagagg agagttggga cacagccacc
       61 acatatatca tcctttccca tcagtctctg ctcctcccta cccctcttcc tcctaccaga
      121 aaggcattat aaaaatgtct tatctgcttt cgactttttc tgaaatcaca gtactgatga
      181 aaaagaagaa agagagagag agagagagac aaagaggcaa tagggtgaac aagaaaatgg
      241 catgtaaaat aactataaga tattccaggg gaaaatgcac gagctgtaat cattcaagat
      301 ttcagcaact tgactcttca catgctgaag ccacattttc aaggtcttat ctgccatatg
      361 gttccctgtt tggatgattt attaggtgta gaaagcacac tgataaattt tactgcattt
      421 ccctgaatag acaacctatg gtgtcaataa caaagctcag gccactttaa tgaaaactgt
      481 aagcaccaaa gggtaaccat ttatttatga gtcactacag tattactagg acaaaattta
      541 tcttccattc tcacgcactc tgcagaaacc aaatctggtc aaagaaacag cgatcacatc
      601 catatgtcag tgacttacta atacgtctcc tgcacactca gggcttgtat ccaaataacc
      661 agtttccatt taattactat tttctgtaat gtaaaagatg ttcttatatt ttaaaacttt
      721 ttaaaaatac attggtgaca acttgcatat ctacaaacca ttctacactg tgaatttatt
      781 atgtccaaga caacaaaaga aacctatcaa aaataagaag aataatttct gtggtttaag
      841 ctttagctgt atgggagtgg attatcaaac tccctttgga taatcctgga aaaaaagaag
      901 ctgaaaacaa agggcagctt atgga
//
LOCUS       KCLA01003254             484 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53022upu ultra-conserved element locus uce-6796,
            sequence.
ACCESSION   KCLA01003254
VERSION     KCLA01003254.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 484)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..484
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53022upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>484
                     /note="ultra-conserved element locus uce-6796"
BASE COUNT          168 a           91 c           87 g          138 t
ORIGIN      
        1 ttgcaatact ctattttgaa tattctgaat tcttgcatat tctgtggtca aatccattag
       61 taacttacag tgataaacat ctggagtcta tcaaaaccac agagccttat gctgtaggta
      121 caaccagcct ggtgaatata acaagcaggg actaactgtg taatagagga ctcaaccagg
      181 aatatgtttt ttatgatgtg gcagcataag ggagatcaaa gactaaagcc aaataaatag
      241 caactgggta ccagcaaagg aaagatattt agaccttaaa gtaatcagaa acaaacccag
      301 tgtatgccaa catcctctgt agtcaaaagc aacattttta ttttttatat aaaaggtttg
      361 agtgatggtg gaattttggt tggttttaaa tctattttca acacagagag agtattttca
      421 tttctcacag acaacagaac atgaagggca agaaccatcc cctcacccca ccatccactt
      481 tatc
//
LOCUS       KCLA01003255            1139 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53038upu ultra-conserved element locus uce-1090,
            sequence.
ACCESSION   KCLA01003255
VERSION     KCLA01003255.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1139)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1139)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1139
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53038upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1139
                     /note="ultra-conserved element locus uce-1090"
BASE COUNT          355 a          224 c          202 g          358 t
ORIGIN      
        1 accattacta tgatgcttga gttactgcta gctaacagag aattcatcat ctgtcagtga
       61 cctccaaaat cagtcaaagt tttcattgct cagaaaggaa tttcatacac aaagtgtaac
      121 atctgttagg agagtcagct gcaatttatg gtgtttgctg tatgcagcaa catgcctgta
      181 atctcatacc atgtttgcta taacatagtg actcactgcc tctcttcact agacagttct
      241 gacgcctgaa gtcaccttga ctggagcaag tattaatttc tgacagtgat gttttaaata
      301 tttgcataga caaagttgtc caagcaagcg ggagaagatt ctactatggc caaaggagct
      361 cctaaccttg ctgtcctttc ggagctcatc ttgagttagg tacccaggag tcaccaagtt
      421 tctttacaca tagtctggag tgtaaagtca cagtagtatt caaaaggtta aagcagagtg
      481 aactgttaat tttaatgctt tctctaagct tcagttttaa taagcgaaaa tgatgttctt
      541 atttgcagta aagtggtgtt ataaaattct gtctgtcaag ctcattttaa aaccatggaa
      601 ataaatgatc tgacaaaatc aggctattag acaagtgaag aagagtgatt tccataaaag
      661 tagaggagct gttccttaat ttcacacttg gtagtctttt gggtcgacta aatttttaaa
      721 taagtgataa aattatatta gcgcaattgc atttttatag atttttttgg tcattgtact
      781 ctttttcaat tcctttattt taactcaaac cattctgctg aaaggttacc tctcaactta
      841 cgttaactca taacagtttc tgctcacaca acagaactat aggttcacaa atcctccatg
      901 aaggtactca gaatgaccac actgacctga aagtaatata aagtgaaaag atcatcttag
      961 tgcagtcacg tactgttgaa atgctgggcc tgcacactac atcggactgt ctgcagaaac
     1021 agatgcatag taagtcactt taaagcagtt catcttcata tgaccatttt ctttgtgagc
     1081 agactacaaa ttccatcacc tactccatac acctagaaac caaacaagat gctcttccg
//
LOCUS       KCLA01003256             901 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53054upu ultra-conserved element locus uce-5166,
            sequence.
ACCESSION   KCLA01003256
VERSION     KCLA01003256.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 901)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..901
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53054upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>901
                     /note="ultra-conserved element locus uce-5166"
BASE COUNT          171 a          232 c          261 g          237 t
ORIGIN      
        1 cctgcaggtt tgcaccttgt gaatccagcg gctgttactg acagggtgga acgcaggcag
       61 gaaggtttct ctttggtttg tgtgggtgtc atgagcgagg accacaaagc ctccggaggc
      121 ttgttgggag catcgcgtct gtacccactg caaatgggct gtggagtcac tgctgctttc
      181 catttcagtg caagcaggag taacctggat ctatcggcca gactttgctg tctctgtgct
      241 cagacaggag ctgctgtggt ctttaacagc tggaattctt tcctttgcct caggtagttc
      301 aaaggacttg cactccacct gccagactgg gaagagggag ctgcgacagc gccgtgctgc
      361 taccggggct tcattcatcc cgggtttggt tccctaatgc tcgtttgcct ttgctttgtt
      421 gcagtacatg accgctgctg cacctatgca agggacctac attccccagt acactccggt
      481 gcctccagcc gctgtcccta tggaagtaag tggatccctg atgaaagccg ggtaaggggg
      541 tagcagaacg ctgctctgtt ctgcctcctt gcaccgcttg tttgaaaggg gcctgcagtt
      601 accgcacgga gtagttgctg gaagcttcca gcttttaaaa ttaggagcgc acgtttcttt
      661 ctcttttctt tctccctcct tcttcctccc caccctcccc ctttatttcg ttatttgcga
      721 ggaggtttgg ttggcgtttg gcttgtggtg cagcaggacg tggagtgaaa cagccgtggt
      781 tatgactgtc tttcccctgt gcttgggagg gagatgggaa gagacaggaa aacaaagcca
      841 gcaggcagac caccaagccc agagaggtcc cgagaagatg gcaggagggt gcgatgcggt
      901 c
//
LOCUS       KCLA01003257             972 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53069upu ultra-conserved element locus uce-3651,
            sequence.
ACCESSION   KCLA01003257
VERSION     KCLA01003257.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 972)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..972
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53069upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>972
                     /note="ultra-conserved element locus uce-3651"
BASE COUNT          265 a          222 c          239 g          246 t
ORIGIN      
        1 aaaaaaatag agtattctgg gttgttatga aaaaagttct tttctgtcaa ggagaaaaaa
       61 agtgacacat ccacaaacag cagcggagac tcgctggcgc aggcagtgat agatggggac
      121 ttttgcttgc tctcagatgc atggaagaga atagtttttg tgttaagagt ttgttacagc
      181 tccagccctc ctactgcact gtttcctctg aaatcagggg caagattaaa tctgttgtag
      241 ccgagtgctc cgtaatggct ctgacagacg ttgtttttcc ttggcctcac atctgggagt
      301 taaccagcag agcacttgaa accaaccagg tcagctcttt agttgagttt cgtgtctaat
      361 cagccaggaa ggctgaggcc tcaggtcaca catggaaatc actagagcta tttaagtcgc
      421 cagaggttat taataaatct cccactattt ccttaagtaa ataattggag gcccatcttt
      481 caaacaagtt atgtctggcc atgttatggt accaatttta tccttccttt tttcccctca
      541 ccaagcagga agaacaaatc tctggtgaca acaatggcaa aactgtgaat tataaacatc
      601 catgtgtctc tcatttgaat gcctcctcga gtttccttga cagctggggg agagagaggc
      661 tcttagtctt tccaccagag ccttagccac tgaaaccgct ctcgcgccag cagagacttg
      721 ggaaaaagca ctcagccccg actgccaggt gaaacacgag ccacgctctc tattaggtgc
      781 tgtgaggtag ctgagttcaa gtccttccgg gctgccatga ggtgaaaagc ctgaccatga
      841 aacatggctg gagggagggc tcaggggctt ctggaaagga aggaaagagc tgagggacag
      901 ctggagtttg ctgtgctgaa cctcccttca agtcacgcac agaaggagct taaccaagcg
      961 tagggaccgc at
//
LOCUS       KCLA01003258             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53085upu ultra-conserved element locus uce-1960,
            sequence.
ACCESSION   KCLA01003258
VERSION     KCLA01003258.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53085upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-1960"
BASE COUNT          271 a          150 c          165 g          278 t
ORIGIN      
        1 aacctacaag aaaaaaaaaa tatgatttaa catcagtgta aattaaatta aatcctgggg
       61 aatagatttt ggataaagaa caaataaatc cctttagaca gaaagcttga aatcgggctt
      121 tgttgaacat catttatggt gtatcttgtc tctgcattga ctatgagcga gaaggttgcc
      181 cagcaagata tttttttttt atttcaagca tgtcttgttt gaaagggata attgtgccca
      241 gcagatcttg tttctaacgc ttcttatata tagtgaaata cagtaattta acagcttgct
      301 gggggaacaa gaatttgttc cagttcctga tttaaatgtt tatgctaatt gctatttatt
      361 ggctcagatg caaatgatag gttggccaaa gtgaaatttt atgacgagca aactcccccc
      421 ttttgtgcaa attgaaaaag tgaaacaaga agaggatgaa atgagccgaa gatggtctta
      481 atggctgctt tttaatgggg aagataaaat taagactgat ttacgtggcc aactcccctg
      541 ttttctctta tcagctcatt tggcaggaaa aatggaaaag taattgttcc tctttcaatg
      601 tgggcctcaa accattattt attggctgaa attaatcgct gtttatcctt cattcacgtg
      661 gaaaatgctc tatcagcatt atgaacccca gcaactcaac tagtcccttg caatttagcc
      721 aacagcaagt acagatcctg atgagccgtg ccttaatttt ctgggctgtg ggagttaatg
      781 aagactcctt tcttaggtag acatatttgt atttctacaa cattaataac aaaggcccac
      841 actttctttt ctgcagcatg taaa
//
LOCUS       KCLA01003259            1021 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53129upu ultra-conserved element locus uce-5477,
            sequence.
ACCESSION   KCLA01003259
VERSION     KCLA01003259.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1021)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1021
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53129upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1021
                     /note="ultra-conserved element locus uce-5477"
BASE COUNT          279 a          220 c          227 g          295 t
ORIGIN      
        1 ttctgtgtat aattggttgg ttaaaaagaa gtacttttat aacatgctgt gaagacttca
       61 aaacaaacca gagtgcagct tcctgggatt tgtggggatg ttgataaata atgcttctta
      121 tatttctgtg ttcactacat tttcacacca gccttggaaa cttgcttaaa cactgtgcct
      181 aatcattctt tcacatagac catgagtcag aagtgactgt actggaaaaa gcagagtgga
      241 ttggtgccgg tgatctaaac aagtttaagt gggtggaaag acctaggaag ttgttacagt
      301 agaagcatta ggggctgtct cactgtgtta ttcccagtct tgtcctacag caatgaccac
      361 tattgaggca gtgaagtgag ggtttaaatg gtgcccctgt agttttgtaa ctctcccaaa
      421 tagaaaaaga tgacttttct cattgctcac cacagccatg cacctgtttg gcctaaactg
      481 gcacctgcag ccgatggaag ggcagatgta tgaaatcacg gaagacacag ccagcagttg
      541 gccagtgcca acggacgtct ccttataccc ttcggggggc acagggttag agttacctga
      601 caggaaaggc aaaggaacca gtgaaggtat ggttggtgtg tgtccatgtt gtgagtcttc
      661 tgtctgcctc tgaactccag ccattaaatc tcatgttcca ttaccctcaa tgctgccacc
      721 aggtgctttt cccagtcttt cacgtttaga gctagtagtc gtcagtcttg tttccatatg
      781 tctctaagtt tcatactcta ctaatgtccg ctaatgtgat aaaactgttt gcaaacctca
      841 ccacgcactt aaagcattct caaggtgaat ccctctgtac cacagttcag aaggctataa
      901 tgaaaaccct gcctggagca gctgttttca tgggaaaaaa atgtgcttgg aaaatttaat
      961 gactattgta gcactggatc aagctttctc tgcaacagca caaaaacatt tcggttcgcc
     1021 t
//
LOCUS       KCLA01003260            1245 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53143upu ultra-conserved element locus uce-1357,
            sequence.
ACCESSION   KCLA01003260
VERSION     KCLA01003260.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1245)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1245)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1245
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53143upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1245
                     /note="ultra-conserved element locus uce-1357"
BASE COUNT          345 a          253 c          252 g          395 t
ORIGIN      
        1 ctagtaacac tcaagtttgt ttcttgtggg aaacgatgga aactggtaaa attatcaatt
       61 gattttcctc tccctctaag tgtaaaattg tttctcactt gataaggctt gaaacgctaa
      121 ctgttattaa ctaccccttc ttctacaaag ttttataaat ttcagtggca gccaatgttg
      181 gttacagtgg aatgatttca ggacccgatt tatttatgat agggactatc gaactgttct
      241 gctagcagca cagctaaagg ggggagcgat agatccacat ttctaaacca tcattttgat
      301 gtaaggacat tagtagcaaa ctaaggtgca ttgatctggc ctgtggggtc aggattagct
      361 ggaatagcca gtgtctctgc tggagcagtg gttattcctg cctcccagct atggccattt
      421 caaaggtcag gtgccctgta cccacttggc tcagaggaat tagacagaac atgagtctct
      481 gggctgatta cttaaccaaa gacaaaataa tgagtcctaa gcaaatactg actaattgaa
      541 agggctgtaa atccattaca tattggtcag ggataatcag gagtatttaa tcacttttat
      601 ctattcagga gcactgaagc tgcaacagca aagccctgaa ccttgccatg tgcttattat
      661 tctcatcatt atcaaaatta cttcacagct gttctttgct acatcacctc agctggagat
      721 ttactaacct gtaaaatgtt tttaatttgg aaatcgagtg agtgtgagtg gaggggtttt
      781 gatttagctg tagggtttct tcagaggagg agtacaggca gacagtaaga tgcagggcca
      841 caaataagcc agtttgtttt gtgtgtctct gtgtaacctg tattacctct tacaaaattt
      901 gttggttttt ttctccctac cttttattct catgtgctcc ttgaaagaaa ttgacaccta
      961 cttgttaaac agtcagctgc ctctcacttg tcttgagcaa agtcctcctg gctttttgaa
     1021 atcccttttc cttgtttctg tccttactct cctgaccctc tccacactgt atgaattgag
     1081 tgaatttgcc atcactggtg aggatggtct cacaaaaatc aaattaaatg aacagaaaaa
     1141 agccccaaac cttttaccgt ccaaacttta atgagtttgc aggtgttgaa agatttactg
     1201 tgttgtaatt ctcagacctg caaactgata atggagaccc ctgac
//
LOCUS       KCLA01003261            1058 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53159upu ultra-conserved element locus uce-7148,
            sequence.
ACCESSION   KCLA01003261
VERSION     KCLA01003261.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1058)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1058)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1058
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53159upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1058
                     /note="ultra-conserved element locus uce-7148"
BASE COUNT          343 a          202 c          190 g          323 t
ORIGIN      
        1 atctttgggc catgacaaat gcatttctat gaatcatcac ttcttttcac ctttccctga
       61 agtttacaag gtgcagaaag taaacagata agtccatctt agaaatttca cagcatagag
      121 agatgcacgc aaataaaatc tgagatacag gaaaacaagt aaattctctg tcaactaatt
      181 tcttaatgaa atatttattc aatatcaaca aaagcaaact tacattggaa cacatttcct
      241 accacacatg caagtgtttc atttagcgta ctttgttgtg acctttggca atgctgaagc
      301 agcttaatgt tatgaaaact gatttatttc aggattaggc aatttatata gaatctaacc
      361 tttacgcagg taaaagtact tgcccttggc tattacttag cctgaccaca gggctttctg
      421 gaagcaggaa aagctctata agtgtcagct catggctaaa tcaatgttta tgcatgatgt
      481 acctttgaat agcaaacact tgctgcctgc aagctaaaca atgtttttat ctgtttgcct
      541 atttctggtc cttcaaccac agcacagggt gttacaaatc gcatttagta acaattatct
      601 gctggaattt catgaagagg aaagtagcat gattaatgga aagtgacata cagagattac
      661 tttgctatgc tagtctcctt ggtgaaccca cgactctgtt gaactgaagc ctgacctttg
      721 ttacttttaa cgaggtcatc gtgaatgcta aatgcttgaa agattagcca ctacaaatgt
      781 tccagtatta cttaatgatg ctgccactaa cgaactgcag gtagccaatt aaatataatg
      841 atacagtttt cacttctgaa acaaaggttg aatatgccaa aagctgtgtt ttctatcaag
      901 gtgttcaaaa tacaacctca gagctctcgt taaaagatgt tattcttgca caaagataac
      961 tatgaggcaa gatttggata aaacagagtc cagctttgaa ggatatgagt acccagcata
     1021 tcactggatc attgctcaat agctgtgatg tttacacc
//
LOCUS       KCLA01003262             309 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53174upu ultra-conserved element locus uce-7467,
            sequence.
ACCESSION   KCLA01003262
VERSION     KCLA01003262.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 309)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 309)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..309
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53174upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>309
                     /note="ultra-conserved element locus uce-7467"
BASE COUNT           69 a           85 c           73 g           82 t
ORIGIN      
        1 tagcccagat ttgcagcagc attatctttt atctcagctc cttttaaagc cgtttggcat
       61 ttgccaggct tttctagtct cagtctaatt gcagattcca aacagacaag ggctcattaa
      121 gccttaatta cacccatgtt gttttcaaca aacattttca tttggactgc tggcagctgg
      181 aattgttccg aaggcaccgc tgcctcccgt tacccccctc cctggcacgg caaaagctgc
      241 tttcaaggag gtgatggctt ggccgaagga gccaagggat ggggagcggg gtgcgccctc
      301 ccagcccaa
//
LOCUS       KCLA01003263             950 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53190upu ultra-conserved element locus uce-266,
            sequence.
ACCESSION   KCLA01003263
VERSION     KCLA01003263.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 950)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..950
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53190upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>950
                     /note="ultra-conserved element locus uce-266"
BASE COUNT          284 a          194 c          220 g          252 t
ORIGIN      
        1 tctacttact attgtctttg ctagaagccc ccaggctctg ctaaacattg catcggtact
       61 aaacacatgc ctcatagtct aatgacagag gcagaagaaa taaaaacaca cttaccactg
      121 tcagaattaa tctgttaata ggaaagtttg tggcaagcgt tctgtaactc atatctgtga
      181 ggaaacgggt tccccattta cagaaaatgg agctgtttct tcttaagcga tgagctgcct
      241 attgtgtagg taattacaag gaggcctgtg ttgacctggc aatgaggtac tgtatctaaa
      301 tacctgaagt gaaggcaaaa accagaaatg aaagcagagg ccccatctgt tagactataa
      361 tgattgtgct atttgaaggc agaaaggttt gtctgaagca gctggtttct ctccaagtga
      421 ccttttagca tttctgcttt tgctgtctga cagatgtgtc aactcaataa tttcaaaagc
      481 ccctgagtaa ataaccaatt gtgagcaagg atgacccaaa gcaatgacaa aatgggtgca
      541 cacgcagcac attacagaac ataataccta ctgaaagaac tgggaacatt atcgaagggg
      601 agaaacattt tactctttat ttttgagtaa atggtttccc tgcccactga tcagttgttt
      661 tcaaggaaaa aaggaactgt aaagtgaatg gaagggcact gtggcctgtt tgctcatggt
      721 gcgtgtcagt aagctggctg caggactcag gtggcatctc ggagctccaa acggacttca
      781 gctccctccc ttggcccaca gccaggaagg gctgaagaca gcagctaatt ggctttttga
      841 gtgactgtga atctgcagag aggtgcttgc aagcagacaa gacccaactg agtttaaagt
      901 ccactgaaga gttttcaaaa gtgatgcaga tgctgctttt tactcaagcc
//
LOCUS       KCLA01003264             203 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53205upu ultra-conserved element locus uce-7444,
            sequence.
ACCESSION   KCLA01003264
VERSION     KCLA01003264.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 203)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 203)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..203
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53205upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>203
                     /note="ultra-conserved element locus uce-7444"
BASE COUNT           58 a           31 c           43 g           71 t
ORIGIN      
        1 cagtgctgca aataaggaag tttctgtttt gaagtccata tgtgtgtgag cttgagatgc
       61 cagctggggt atttatgttg cactgcacag atgtaaaact gccaactgat tttataccaa
      121 ataaatgcta atctttttat acatacttgg tgtcagagtt atgaagtggt atataagaat
      181 gttctcacga cttagctctt tta
//
LOCUS       KCLA01003265             963 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53219upu ultra-conserved element locus uce-4540,
            sequence.
ACCESSION   KCLA01003265
VERSION     KCLA01003265.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 963)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..963
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53219upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>963
                     /note="ultra-conserved element locus uce-4540"
BASE COUNT          229 a          268 c          184 g          282 t
ORIGIN      
        1 acattatgtg caaacttgta ttgaagccac ataacgtgat gcaaaactaa gaagtgctca
       61 aataaactga aagatggctg accaagagga acataaccac ctggcatgga aactctcaca
      121 aacccctggc tgtgtgtact acactgacag gaccttgggt acctagagag atacctttag
      181 cacaagatca aaaggacagt attgcctcag ttagggtcta gttcatgcat ttggggctta
      241 gagcactgag agctcgtgtt ctataaattc ctttcaccac ttattaactc ctctcctgct
      301 gagactggga aaacatcatg ggtgcagatc ctgcctagga gagaggtgct ccaggtcccc
      361 accctttcac ctctaaaagc agttgcttag gagcctcccc tcatttgcat ggagagattt
      421 aatttccaac ccttaaatat gacgaattgc tgagatttcc ttcagttaat gcttttaaca
      481 gctcccaata aacttcatta atcagaccag ctctaggccc aatgtgcagc ctggaagcag
      541 ctaatttgcc tgatgagccc acgactttag tgaataaaca ggtggataag ccgagggttt
      601 tatggcctta attacactct aatcagttca gcacttggcg ggcaaaaggg aagaaggagg
      661 cagcagcagc aagagcttca gcagccgctg cttctcagcc cttccctttc tgtatcagct
      721 ttgctttcct gcttcactcg cctgatttcc ctttctagtg ttcgccctcc ttcctcctct
      781 attctctcct ctttttctcc tctctttcca ctgtcctgct ccattctcac aaagccaacg
      841 tctgacggag aaaaaggctg ttttgttctt tctttcctgc tacctgctgc ctcctttcat
      901 ttttttcctt ttttcccctc tctgtacctc gctccctctc tcacctctcc ctgcctctgg
      961 gcc
//
LOCUS       KCLA01003266             633 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53234upu ultra-conserved element locus uce-6462,
            sequence.
ACCESSION   KCLA01003266
VERSION     KCLA01003266.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 633)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..633
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53234upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>633
                     /note="ultra-conserved element locus uce-6462"
BASE COUNT          177 a          101 c          122 g          233 t
ORIGIN      
        1 gggggggaag caataatgaa tgcataacct acattcacag aaaatataac tggcctattc
       61 atgattatga gtcacagttt ggtcactaga aatatattgt tctgcaggtt tgtgccttta
      121 gcagttattt gttaatgaca acctctgtac acatttttgt gcgaggcttt tggatttcca
      181 gagtaaatgt gtccttcaaa caagttattt ctttgaggga tctttctgta agtgggttct
      241 gctgtgtatt gactattcat attattttct gttatcatct tgtcagggtt caattcatta
      301 ctccattcat tattcaattt gttgggccat gagcatgtga ataattgaaa actgcagaag
      361 tattataaat tatagtgtct ccatgaaatc tcacatttag gctttatggc ttgactttaa
      421 gaaatcagtc tctgttgaaa gttggtgtat gaggtctcat catcaaagca gaatcttacc
      481 agtgcagtga tttttaatat caatattgtg gcatgctcga ggacttgggt gcaaaattat
      541 ggactactgt aacagtttct tttgtttaat ttctattgcc aaagtccttt tcactaaata
      601 gggttaatgc tgcttcccta tattaaagac aaa
//
LOCUS       KCLA01003267             906 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53250upu ultra-conserved element locus uce-2925,
            sequence.
ACCESSION   KCLA01003267
VERSION     KCLA01003267.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 906)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..906
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53250upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>906
                     /note="ultra-conserved element locus uce-2925"
BASE COUNT          244 a          188 c          192 g          282 t
ORIGIN      
        1 cagtcagaag ctttcaccct taccttcctt ttgggttgtg tatgggctta ttgctcagcc
       61 atcttcggca gcgtggaatg agtttgattt gtaccagtct gatcttcatt attggtttca
      121 aactacttga tgctttctag tgacctgcag ttaaatcaga tgttgttact ctatcgactc
      181 ttttctgttt ttttttaata aagaaggcca aattagcaat aatcatttcc tttccctacg
      241 attctgaatg gacgttcgtt gcaaagtaca atgttgtatt taaaaaaccc cgaacctgga
      301 gataaatgaa tggcagaata aataatttat gctaatgaaa ttactgcaat tagtagttcc
      361 acaatgaccc ttttaaaagc cacagctgtt aatgtcagga agtgctgtca ctgctgacct
      421 tatcataaga gaaagtgaca aattgaaaat gcagggaaga ccaatcctca aagaggtctg
      481 ttcggcaacg attagtgttt tctgaaaacc agtgtgaatt acaaccagct gctctctggc
      541 tcagcgtgtc tcccatgctg tgcgattttg ttaagctcga taacaatagt cattttgccc
      601 cactgagacg agttgtctca ggccacttcc agctcaaccg gaacccactt cttccctcgc
      661 tgatttataa atgaaactgt tggtgggctt ttcagggctg ctgagtagat acctctcata
      721 aggatcatgt gaaggaggtt gtcttttgct cggaagggct gtgctgcagg gtgcgtgcgt
      781 gttgcggtca atgaaaaaag aagaacaagg ctgaaacaaa tttgagttgg aaaccaagag
      841 ctgctcaaat ctgcattaaa tgtccgttcc tgctgactag ccttgccttt acagaccatt
      901 ttcttt
//
LOCUS       KCLA01003268             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53266upu ultra-conserved element locus uce-437,
            sequence.
ACCESSION   KCLA01003268
VERSION     KCLA01003268.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53266upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-437"
BASE COUNT          266 a          163 c          151 g          287 t
ORIGIN      
        1 aatgtgtttg gagacctttg tgcaacactg agcatttctg ttgttattca attactctag
       61 tttatttttt tctttctttt ccctttaaac attggatgat tacattattt tagaaatctt
      121 aacaaatgat gcattagcaa agcatttctg tacttctcaa gtgctaccaa tccatatctc
      181 tttagctaat ctacccatcc tctaagttct ctctcttacc cagtggaaat gtgcgtgctg
      241 ctgtaatgaa atcattgcca tgtcctatag agtatttaga tcaacaagac cttctcttat
      301 tagaaagggc agagtagtaa tgcttttggc agagccatta ttgtggtatt ggtattcact
      361 agaaaggaca gaaatagaac aacactggcc tccataaaca attccaattt gatctgtgta
      421 catgataaaa tcttggcttc ttgatgcatt taggtgctgt catagctgtt gttgccaaat
      481 aagaatgcac tgtgatgtta ttatagtaaa cagcacttaa gcacagctgg cagaattgat
      541 cagggccaca ttagagtgaa cttcagcaga tgactgacgc agcagaaaca ataactgaat
      601 atgcaaacag ttcttgcaat aaatgctctg gggatcaggc accattattt ttgactttga
      661 acagggaaaa ggggcagctt tgtaacctcc ttccacacaa aggggttctg ggtattctat
      721 aaacatctga ctgccattta taatagtagc tagttacaaa gcaaaactct agactccctt
      781 gactatttac atttcattaa ttattaaaga aaaaacataa atatcagata agtttgttta
      841 atgtttcaca caggattctt tctctct
//
LOCUS       KCLA01003269             634 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53282upu ultra-conserved element locus uce-6360,
            sequence.
ACCESSION   KCLA01003269
VERSION     KCLA01003269.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 634)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..634
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53282upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>634
                     /note="ultra-conserved element locus uce-6360"
BASE COUNT          200 a          144 c           98 g          192 t
ORIGIN      
        1 ccatcgagct tcctttcaag caaagaacta tttatctact taacacagaa cataaccaac
       61 ttttgtatgt ttcatatatt acatttattt caaaatgcct ggcattatta atccttttta
      121 tattgttaat ataaagatcc tgcttcaaaa cctcaaaacc ccagaaagtt tatttttttt
      181 ttttgcattg catgcactga tgaactagcc tgctcagcaa gcatttaaca gattagacac
      241 ttgaacatgg tttcaggcaa tgctctctca tgtttctgcg tattgcctga taaacacttc
      301 aaagtaaacc gctcataaat atgaaatgaa aagcagagaa gtcgttatgc acagctttga
      361 gatacaaatc tctttattcc cctctgaagt ggggtttgat tgacataatg agtcacagat
      421 cctgtccagg gacacactgc cttatcccct tttcctcagg agacagggag tctttaaaga
      481 aatccacttc agaactttct gatagacagc tacagaaaag ttgaacacca cactgagtta
      541 ttattttgaa ttaatacctg ctttaaccac cgtgacatgt gtcacaggct gaacccaaag
      601 ccaacaacag gccccagcac ctgaaccttc taag
//
LOCUS       KCLA01003270             829 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53298upu ultra-conserved element locus uce-6946,
            sequence.
ACCESSION   KCLA01003270
VERSION     KCLA01003270.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 829)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..829
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53298upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>829
                     /note="ultra-conserved element locus uce-6946"
BASE COUNT          238 a          162 c          155 g          274 t
ORIGIN      
        1 ggaaattctg gggatagaaa cttagactgc aatttaacag aaggttatcc tatatcaaaa
       61 gtctctgcta caacctctct tttaaaaatc ctgcagtggt taaaaactct tgcattttcc
      121 acaagatttg cagaatcgac agaagagtaa tgtgtcagat ttgcttggta taccaggaga
      181 ctcttgtcct ttctgctgct cttttctaga tttagcaaaa ttcaatggtg gtgcaaaatc
      241 aaagggaaaa aacactggca aaattgtgtt ttctaggaaa gactatgcgt gtaaatgaga
      301 aacagtggat agcagcggag tgatctcctg tggccctgct agtacaagct tttcccatat
      361 tgtctcctgc ttttatatta attacaactt gcattatcag ctgtgagtct gtagcccagc
      421 aaatagaaaa tactgcccct ggagacctag cttcttgtat ctattttcca tctccttcta
      481 ttgtactcta ctcagtattc actgcttttc tcctggtagc gctgctcttt aacacaatta
      541 aggaagagca agaagagcac catatttgac ttccaattat taaaactact gggaatagtt
      601 acatgtgtgc tctttacctt ctatggtatg tggcattggt ttaggtcata tgtgtgtgaa
      661 aatgttgttg tatgcatatg tacacaaacc aggcagttgc attttggcag acatcatcta
      721 cactcttcaa tgtgtttctg caaatcgtat tactaaactt gcaaaaagat acaacaatcc
      781 atgctaacag tttgtgtcat tcatctaaag ctatctggtt ttctgtttg
//
LOCUS       KCLA01003271             427 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53327upu ultra-conserved element locus uce-1307,
            sequence.
ACCESSION   KCLA01003271
VERSION     KCLA01003271.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 427)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..427
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53327upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>427
                     /note="ultra-conserved element locus uce-1307"
BASE COUNT          134 a           76 c           79 g          138 t
ORIGIN      
        1 accaccacag cccactctaa gtaattaaat caatcctttg tacttaccgt attctcctct
       61 agtgacggta ctagatctga ttatatgctt catgcatatt caaagtacgg cactgacagc
      121 tctttaatga gctcttactt aatcagcacg aacaatgttc atcttgttct ttttttcctc
      181 atacattaga gcttggaaca gttggggaaa aaatgaaaca tgcagcattc atttgaaaaa
      241 tatattgtac tttgaaaagt gtctaagctg gggaagttgc attctgccct ttaaaagtct
      301 gatggacaaa ttggattact agtattggat taaataacaa atgggtagag gagaaatgag
      361 aaaagctcgc tgtgatcaca ggctttaata ttttttgtta cttataaagc tgaaggggtc
      421 tttaacc
//
LOCUS       KCLA01003272            1038 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53358upu ultra-conserved element locus uce-7000,
            sequence.
ACCESSION   KCLA01003272
VERSION     KCLA01003272.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1038)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1038
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53358upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1038
                     /note="ultra-conserved element locus uce-7000"
BASE COUNT          298 a          217 c          233 g          290 t
ORIGIN      
        1 gggaaattta actgttcttc ggtattgtga gaccagagaa ctctgtaatg tgtcaaagat
       61 ttgttttgtg acactttcac catggaaggg aaggagagaa gggggtaaaa aagtgtttct
      121 ccaaaagcat tccgacccat aaaaagaccc aactgtgtgt gttgggaaac atgtcccaac
      181 acttctttat ttaaagcttt tttctctttc aataaaatgt cagtacctct ttgaatagat
      241 attgtccttg gccaagaccc tcgtgaaagg caacagatgc tgctaagatt gtacccgggc
      301 tatcctctat cctgtctcgt ttctgaaagg gaaaaggcga gaaagaaaga agaaaacttg
      361 ctttaaatca ctggaccatt ttgtactcca gcaaatctgt ttgcatatgc tcgactggcc
      421 tcgcagaaaa ggctgagcct tttgcattca gcctgaggtc agtcctaatg ctccgttcag
      481 tggtccacac tcctttcaca tggagcagct gcctctgatt gctggaacaa attgaggtga
      541 ttcaggccac cagcagggcc acggtacaag tgcttttcac cagaaagaga gggaaagcct
      601 tagaacagga ccaactgggg ctgcccacaa taaaccgtag gattagattt gatacactca
      661 atattaagac atgctcttgc tgaaaagtag gctgtggcga cataaactac acgacagttg
      721 gactgaaaga agaggggggg aaatggtgct caaacattta tgaagttaca cctaattatt
      781 taattgggga tcatttagaa cagtaacact ggcagctcag gcctaggaac atctcactgt
      841 ttaccccttg gcagaatatt cctgtgtgat ttggaattcg ttttgtgccc ccctcctggt
      901 agtgtttgaa aaattgactg caagttctct gaactatttc tgagataaat ttacagcaag
      961 gaattatcat catcgcaatt tcctactgta ctaccaatgt gtttctgtca gtggaagctg
     1021 ctctgtagct gttaaccg
//
LOCUS       KCLA01003273             646 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53374upu ultra-conserved element locus uce-6860,
            sequence.
ACCESSION   KCLA01003273
VERSION     KCLA01003273.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 646)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..646
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53374upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>646
                     /note="ultra-conserved element locus uce-6860"
BASE COUNT          206 a          151 c          126 g          163 t
ORIGIN      
        1 catttcccta ggctagccaa gcggcaaact gcattaagcg accggagata ccatcatgac
       61 atatgcccga ctggctcttc gccacccact tgacgaacac tacccagtcg atggaagcca
      121 ttaatcgcac tgcgctccct tattaggaga ctactgatgg atccagacat tcgctacgct
      181 tgatgttacc aaggaccact ttactgcgat caggattcca acgaccacct aatttcgtat
      241 ctttcaattc ttttcgacca ggacctcgtt attcggaagc gttacaggaa gaacagctct
      301 caacttagga atcagatctg ggatcgctgc aatgtggcac tttaaggagt gcatcgatta
      361 cgtctagacc ggcaaacaca gatctagagg tggccaagtg acattgtagg agctgactgg
      421 aaagtcaacc aggcccaacc aagagtgacc aagacagaac gattaggata acccacaggc
      481 actcctcgtc ataaggccaa cgacacagat aggctggcaa ataaagggtt taatatgtgg
      541 ttaaaatgga tttaaaaaat aaataaatat atatcctcaa atatatacat ttattatcat
      601 tataaattaa cgttaactaa ttttttaaaa cttttcaatt acgtta
//
LOCUS       KCLA01003274             806 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53390upu ultra-conserved element locus uce-3487,
            sequence.
ACCESSION   KCLA01003274
VERSION     KCLA01003274.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 806)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..806
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53390upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>806
                     /note="ultra-conserved element locus uce-3487"
BASE COUNT          248 a          152 c          168 g          238 t
ORIGIN      
        1 ttatctgaga tgtgggacca cccggttcgg tatgtatttt gcaacgtaat ccaactcttc
       61 actctgtgtg acgttgggat tgaaggattt tataaaagag aaaactctta gcatcttaag
      121 tttcttcaaa tgacctggat ggcttttaaa gcaagggcag agcatgacat caggctccac
      181 gtcaggggga gctgagcagt agccaagatc tgggagctca ttggaaagta ttgtaaaatg
      241 ttaatttgcc attgtggacg ctgaagacag aaataacact tcagataaac accacagaga
      301 gctggtagtt ctaatcaaag gcacagcacc tcctttcatg cttgcaaact agggctccaa
      361 ttatgttcac tgctctgaag ctgaatagaa ccgctttgcc acactttcca aattgagagg
      421 agaggcagca ctagtgtctt ccacggcacc gttccaaata acaattaagc agaaggaatc
      481 agataagagc caaacatgaa aatgcaggga gttgaaaata aacttttcat aatgttttct
      541 tgtaattgca tagcttttgt tttggtttta taatttttct ccttgccaca tggttggtta
      601 gcgacttctg ttcttgtata acctggcact ggggtacgag agtttgctgc attcatttaa
      661 cagaaaatga gcaaaaagat ctgaacttct aaaagaaaac attaaattga cctaaaaatt
      721 gcaaccttca gtcttttaga ctgtaaaaca ctgtgttcat taagatattt tataccttca
      781 gtacagaact gccttgttgg tagatt
//
LOCUS       KCLA01003275             733 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53406upu ultra-conserved element locus uce-1895,
            sequence.
ACCESSION   KCLA01003275
VERSION     KCLA01003275.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 733)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..733
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53406upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>733
                     /note="ultra-conserved element locus uce-1895"
BASE COUNT          243 a          128 c          114 g          248 t
ORIGIN      
        1 tgagttacac tgaaaccaaa tttctgattt aggagctcta gtgtattgta gggataaacc
       61 tagtcagtta tatttatagt ttcatttatt aacaatagtc tcacatccta ggaattcctg
      121 ttgctttaca gaagtgcagt aggttttcaa taacaggatc aggtccactg tttgcttttc
      181 ttaaaatctg caataaaaaa taaaaataaa ttccaccact gtttaaacta caaaggtgaa
      241 aaaatgctgt atcttgaatt tttctacctc ctgcggatag ggacagaatg cagacatgcc
      301 acaataatgt tttttatttc tactgttcaa accatattaa tgagaacatc attttggaga
      361 actaattatt tctatttgtc ttgtgtcaca ctttctaatt cccctatatt agcacagcca
      421 aagcaaatta attgcttttc cagcagttga accttgtcca agaatgagct cacattgcct
      481 tccagttttg cagtttctag gagtgcattg tgtcaaaaat ttctcttgat actaaacata
      541 gcccagagaa tatctttaca gatttctgtt gctgctctct tgatgaaatt tataagttta
      601 agtgacccac taggaaagat aaagttctta gctgcaagat tatacatcaa aacagttaaa
      661 gtgaaattaa aattaaatga atgaatctca ctgaagcaaa aaaagcagta attaatggtt
      721 cccttaattg tct
//
LOCUS       KCLA01003276             758 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53422upu ultra-conserved element locus uce-347,
            sequence.
ACCESSION   KCLA01003276
VERSION     KCLA01003276.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 758)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..758
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53422upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>758
                     /note="ultra-conserved element locus uce-347"
BASE COUNT          249 a          173 c          141 g          195 t
ORIGIN      
        1 acaaacaact atgagttgca tataccactc acatataatg gctgatgttc cactcttctg
       61 tcctgctttc tcctaccaca ccacttcaga gtttgatggc ataacacctc tgacaccttc
      121 ccaaatcaca gtaagtgtca ggaagtccca ctgaattaat ctctggcagc tcccaggcta
      181 cgacatctat ccatacgtat aagcaacatc taatttgttg tacaaagcac tgtcaacttc
      241 attcaacaat taaaatcatt aaaaccataa aagcgaccgc aagaagcaaa ggcatttggg
      301 cctgttggga gatacagtac cccacatgcc ttctgccact gctgctacag ttaagcaaac
      361 tttacagcca gtcaagccat catccaatag agcctatttg ctgagcaaca gtggagcttt
      421 gtggtttgcc tcacagttga cagtaagtta tgagcccttt gtgagcacag gggaaggaaa
      481 acagagatcg gaatttggca ggaaaatata atacagaatt ctcctgtcta tggaacctga
      541 atttttgtga aaacaatcaa gcattgttga aagaaagaaa agcaactttg acagatgaaa
      601 tatagagggg ccccttttag gaaaacagta aacaaagcac cattcaggcc aggtccattc
      661 tgtcatttat aaagatagtt tcttctgtgt ggtgagagtt tacagcaaag agttcagact
      721 caacaaatca agtgtaaaat ctcccacagt ccacatta
//
LOCUS       KCLA01003277             645 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53437upu ultra-conserved element locus uce-7276,
            sequence.
ACCESSION   KCLA01003277
VERSION     KCLA01003277.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 645)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..645
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53437upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>645
                     /note="ultra-conserved element locus uce-7276"
BASE COUNT          195 a          117 c          131 g          202 t
ORIGIN      
        1 aaagttagac tttagtttgg aaaatccagt gttctttttt aatcatcact cagagaggga
       61 gaaaaactga agacttaaag aaactttgaa ctgctcgaat caatgtttgt taggcaagta
      121 gctttttcaa cataagtcat cctccccagt aactacacgg aagatgcaac cccggttttc
      181 ggtacccttt ttgtgtgtat gctttatttc ttgcatcagt gagtcataaa atgcagtcaa
      241 ggacttaatt tgaagctcga aagctaaaag gaaaagaagt ctatgtgtgt acttctgtag
      301 cctcggattc ttgtgtctaa ctgcataaca tattttcttt ccacaggagg tagttatgac
      361 aaattagaag tctgaaaatt ttctgatggt gtaaaggctc cagctgtcac tagggagatg
      421 gtgatcagat ttcatagctg cacggtccca tggcaccact aagagttcca tatggtcatc
      481 caaatgtttc gactaaaccc acaacaaaaa aatggcacca gggtttttgc ttttaggaaa
      541 aaaaagctct ttgtaggaat tttttctata aacaaaactt tctgtgatgg ttgtctgaga
      601 agaaaaacgt tgtggaagtc attctctttg ctttgcattc cagcg
//
LOCUS       KCLA01003278             819 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53452upu ultra-conserved element locus uce-1167,
            sequence.
ACCESSION   KCLA01003278
VERSION     KCLA01003278.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 819)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..819
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53452upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>819
                     /note="ultra-conserved element locus uce-1167"
BASE COUNT          284 a          118 c          178 g          239 t
ORIGIN      
        1 ctgagacaga agatgaaggg ataaaggtgg gataataatg aaagcagagg gagcagagga
       61 gtgatgatga tgaaatgttt gtgctggtaa ttgttttatg aagaaaacaa aataaaaagg
      121 gggaggcaga aaaaaaatag tgcaatgggt ggcatcttta tgaactgaaa ccttctttcc
      181 ataaagtgag gggagaaagg gtcttttagc cgaaagaggt cattccatgc aaacctctaa
      241 aggaaagagg attttgtaac gataaaagga ggggagagtg cacttcttgc actttaatga
      301 tttccttgct gctcacagat aggaactgga actccacact attagccaca aatagcgttt
      361 tgaaatgact tctttttttt tgggcaaacc caaaagacat tgctaagatt tacattttca
      421 aatatatgct gacctttttt tcctctttct tttagttcat ttgtcatcag tatgtaattg
      481 aatcaatata tttcctgatc aacccaaaga ttgaataagg tcatgggaag ccatgtgtgg
      541 acattaaaaa tcattatttt actcaaaatg agcagagatg gcatagacca ttcagagttc
      601 caaatgaaat tctattagat tctattacac ttttacaatt atagagacgt tccaatatta
      661 caaggggaaa tgaagtcata ataaaaaagc ccagaggtgt attacaaaga aatgggcata
      721 ctatttttct agttaaaaac ttgatgaaag gagctctgct acttttcagt tgctgagatg
      781 tgaccttgtt cttggggggg ggaaataaaa atataccag
//
LOCUS       KCLA01003279            1024 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53468upu ultra-conserved element locus uce-3647,
            sequence.
ACCESSION   KCLA01003279
VERSION     KCLA01003279.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1024)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1024
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53468upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1024
                     /note="ultra-conserved element locus uce-3647"
BASE COUNT          298 a          180 c          195 g          351 t
ORIGIN      
        1 caaagaccag caggggcttc agcctttttc agtactcctg ggattttaag caagtgaaca
       61 aaagatgatg ctgaagaaat gcacttcacg actgatacat aatttaagat gttcagttgc
      121 aaacaaccgg atatgtattt gtgatttcat ttgagcacag tccaattatc tgcagtcagc
      181 taatatttct gtacgtgtag tttctatgtg ccgctttttg tgcggaggag atgctcagct
      241 gctggtgttt gaatacatgc tagccttgag aacagccata gaacttcaag aaatagtatt
      301 aaaccaccag catttgctat aggaagattt gtgccatcta ggtaatgttt gccagtctac
      361 gtgttgaatt gttttgtagt ggatcatatt ttgttaaacg tatattgttt accatttact
      421 cctcactctc tctttttgtt aggtaaaaaa aaatcagaag aagcagctat ttgtttccta
      481 attgattttc tacgttagtt gttcattgaa tagataagta gtgcctgtga tatttgatta
      541 cagagcaagg cacccattta accttccgtt ctttcctggc caggatttca aatacaatac
      601 aatgtacctc ccttaggctc agtaggatta tactgctagc agtaatccct gatgctatga
      661 aatagacctg atagaacttc aactcacttg tttaggatta tgctcatgaa tttcagctca
      721 tctagttgca ttaacccttt gggaactttt gtgggtcatg ctggaagaga taataaatat
      781 tgtaataaac aagggtagga acttattcat gtgttttaac ttttaatcaa tggtcaaaac
      841 ttaatattca cattgaaaca aatttagcca ctgtagtgta agtcttcaga gtttcttgta
      901 attctgatgt tcagagatct tgcagttcaa cagcatcttt aaacatttca ggctcagttt
      961 gtgcactgct ttttaaaaac tatttttatg aatttcagtt ctcaaggctg aactgaaagg
     1021 gcag
//
LOCUS       KCLA01003280             483 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53483upu ultra-conserved element locus uce-7778,
            sequence.
ACCESSION   KCLA01003280
VERSION     KCLA01003280.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 483)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..483
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53483upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>483
                     /note="ultra-conserved element locus uce-7778"
BASE COUNT          167 a           87 c           88 g          141 t
ORIGIN      
        1 ttttttctac aatcaataaa aaaaaaaacc tctgggtttt ttttttttta aacaataaat
       61 gacttcaata aatttctcaa agctggtagt ctgtttagcc aggcctatta aaagcattaa
      121 gattcgagca ctggctgtta aaacgagcaa atggcaatat cgcaaagtta aacaaatgcc
      181 aaaaaacatt ttccaggatc ccgggattgt aacaatacca ttaatgaggg caaagaggtt
      241 ttaatgcaat ttgcacattc taaagtttca aaaagaggtc ctgagttagt gcattattaa
      301 tgttctcaac atctggaact atgtaagagc cacagacatt gagcaagtgc agggtttccc
      361 cactcgggcc aatgctgact gatttcctcc ccagcgaaaa gcttgtttta agaagtttga
      421 gacagtaaaa tgacaatatc cagagaagag agaaacattc cacagtgtct ttttgcttgt
      481 aat
//
LOCUS       KCLA01003281             360 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53499upu ultra-conserved element locus uce-6981,
            sequence.
ACCESSION   KCLA01003281
VERSION     KCLA01003281.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 360)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..360
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53499upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>360
                     /note="ultra-conserved element locus uce-6981"
BASE COUNT          101 a           79 c           62 g          118 t
ORIGIN      
        1 ctgcagtcac tcaagaaaag aaatttttaa taataaatat ctaacaatta atgggctggt
       61 agctgcagtt gtcttcaggg cataatatct aatttcctcg caatgtttca tatccttact
      121 tttcacgctg caacagtcta tcattaaaac cgaatgcagg tttctatcac ttttatttat
      181 tttccaaatc aacttataaa tcagtgccag gccttgttac agatgagttc caataaatta
      241 tcggctgtgg acaaattctg aatgttaaac atgctctgtt ttgcctaact gtgctcctgt
      301 ttccctctga gcccggagca caagacacag cagggcttct ggggggttcc cccttttaaa
//
LOCUS       KCLA01003282             779 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53515upu ultra-conserved element locus uce-1163,
            sequence.
ACCESSION   KCLA01003282
VERSION     KCLA01003282.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 779)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..779
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53515upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>779
                     /note="ultra-conserved element locus uce-1163"
BASE COUNT          241 a          121 c          156 g          261 t
ORIGIN      
        1 tcagaatgtt ctgttataca taacattaaa atgttcatta aaatcaatgt tgggctgctt
       61 ttcttttcat tccgtttgac gtttatgaga gcatttggga aaaaaaataa ttacaatttg
      121 ggcaaagtaa tttttataaa taatttaaaa ttgtttaatg acttcttatc tgaagtctct
      181 cctatctggc tctactgtta ggaattaaaa atgaagcagg caagatatcc tgacccgctc
      241 cagccttgct aatgctccat ctacaacatt tctaattagg cagaaattca tgtacttcag
      301 ctaagtggta atgaaaagtg attcatttgc tgaataagag atgagagtga gtgtaattag
      361 ctgactgcgg tttttaatct ttcaacaatt caatgtgttt aaattagttt caaagaatag
      421 gagctttcaa gtgttgttac atcaaagtaa tcaaggcagg ctttaacggc tgagtaggag
      481 agatcgctct ggttcctgtt ctgaaacctt taaacttatt tggaataatc aattcaaaac
      541 ttcagttcta acagatggga agactcaaac caattcaata tatgcagaat tgtggtggga
      601 agaaagctcg ttcctggggc aatacctggg tggcaggaaa atctaaatct atagttgtca
      661 ttgctatctt tggtgcagcg ctgctcaaga gtctttgaag attttcaggt gagtagggtg
      721 aacctattca ttacactgca cttttaaggt aagtttagtt actcatgttt gagttgaga
//
LOCUS       KCLA01003283             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53530upu ultra-conserved element locus uce-6552,
            sequence.
ACCESSION   KCLA01003283
VERSION     KCLA01003283.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53530upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-6552"
BASE COUNT          136 a          152 c          113 g          177 t
ORIGIN      
        1 cccccaggat cccagtagtt ttggccagaa ctgctctctc ctgtccctca ccaccccatt
       61 tttccactcc ttccacacct ctcccatccc agacctcatg gagtccccac cccccagcct
      121 caatttccaa cctcctgcaa ttttccctcc ccatttcttt tctggccgct ccaaagtttc
      181 acctcatctt tgtcttaacg aaccaggtta aatagtccct aatcagggta atcatatacc
      241 tggactcgtt cgctggggat ctgccttttg tactgcgaca ggacattaat agtaattatt
      301 ctgctttgta attggagctt taaatactaa ttcaaacagc cagaggaaaa ccaattagtg
      361 ctaatttatc tctatgtgtt ttggagagcc tgtgtctgtc atactgtgaa gaaataggtt
      421 ggtaattagt acagttgggt ggtagataga agtaattatc agattctttc atgttcttta
      481 aagaaatgga aaggctgagg gaatcttcct tcctgaggaa gtttgctcct caaaggatgg
      541 tactgcgtgg tctcggtcgg cacggggatc tcctgcgc
//
LOCUS       KCLA01003284             442 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53546upu ultra-conserved element locus uce-3925,
            sequence.
ACCESSION   KCLA01003284
VERSION     KCLA01003284.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 442)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..442
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53546upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>442
                     /note="ultra-conserved element locus uce-3925"
BASE COUNT          116 a          109 c           88 g          129 t
ORIGIN      
        1 ttctctctct ctctagacat atatatagaa taagaaatag gcttgttgtt aatggaagga
       61 aaccactgcc ttaaccatga cactttcacc aagacagtca agttcccttc tgggcagagc
      121 acagagtctc aaagtctgct tgacatcttg aagcttaaat aaccgtaagg cattgttact
      181 ccctggcagc aaagtgcctc gttacgcctg attgagctaa ttgctttgaa ataggatata
      241 ttatctataa ttatagagat cttggaggag acggccagcc ttttctttca tcttttccaa
      301 gtgcatcata atgtcgctat caaattaatt tgggccactt gaaatagtgc tttcctttca
      361 gcccggctcc ttcgaccctc aaagagccgg ggacgcctcg gcggctggcg tttgaccgtc
      421 caaatcactc ctcctggtaa cc
//
LOCUS       KCLA01003285             823 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53562upu ultra-conserved element locus uce-7684,
            sequence.
ACCESSION   KCLA01003285
VERSION     KCLA01003285.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 823)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..823
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53562upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>823
                     /note="ultra-conserved element locus uce-7684"
BASE COUNT          189 a          176 c          220 g          238 t
ORIGIN      
        1 tgtccaacca ttttctacgg gctggttacc tgatccctgt gcagggcacg aagagctgct
       61 gagttaatca ttccatcagc tactctgtat attggtgagg actggtctgg gcacagctgc
      121 atagcaaagc aggcaaggtt ttttgcaaac tgatttatta aaagtttctt tcactgtgtt
      181 atttgcaagt cccttgctcc tctgtcattt gcccttggct gcagtataac cataaatgtt
      241 tactgcaaag ccatgaagaa tccatatgtc catttgatcc atcaggccac caagaagcca
      301 gggcttgtgg ggtagcataa ggatgtctga aggtgacacg tgctgtcatt tgatgaacag
      361 agatgcagaa ggggtttctg gcagcctcta ccttggcctt gacaacttgt gatggtgacc
      421 aggtggggtg tgttatcgta atagcgtgga gctctggtga attatctgct gatggctgta
      481 agcagctgtt attcttggta atggagagca attagaaaca tctgcactcc tggccatgag
      541 taatgcctcc cagcttcacc gctccccagt gccaactgga aataactcca tcatccggat
      601 ggggctggca gttcatctca gcattatggg ctgatgatta gtactgagct gtgaagagca
      661 agaggtgaag tgcaaaggaa tgagcctgtg cctgtacctg cttagtcttt gtttcccctt
      721 ttgggcagaa cagatggaaa tggctgtttg gttatgtggg gagaagcaag atgcccagtg
      781 ctgctcttca tgttatttga tgtcctggtg cctggggctg tcc
//
LOCUS       KCLA01003286             552 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53577upu ultra-conserved element locus uce-4465,
            sequence.
ACCESSION   KCLA01003286
VERSION     KCLA01003286.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 552)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..552
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53577upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>552
                     /note="ultra-conserved element locus uce-4465"
BASE COUNT          174 a           80 c          119 g          179 t
ORIGIN      
        1 gttggatgaa gtttggcttc atgcaactaa atttgaggcc tggtaggcat tagcagggca
       61 cagcacattt acagagctta attagtacgc gctgtaattg ttcatggtct gccagaagga
      121 gtaatgttca ggaaaagtgg agtcgttctt ctgcagtctt cagttttaaa acgataaatc
      181 acttgcatat ttgtgcagtg attcaaatgg agctgagacc tctccatctc aacatgtggt
      241 aaattgtaaa gtcaatgaaa tgcagatgta ggatacagca gattctctaa gaaaatgcaa
      301 aatgaatggg gaagggtgat gctataaata ctgagaagat aactgggttt ctgcttgctg
      361 tgccaattat gatgtactaa agatactaga aattttgttt taaagtattt attttaaatt
      421 tctctaaact aaatatagga gtgccatctt atttcacttg aggtttttat taatgctcca
      481 gaacaatggg tttaatgtgt gatagccgta ttaatacaaa ttaattcatc atgggtaaca
      541 ttgcagctat ta
//
LOCUS       KCLA01003287             415 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53592upu ultra-conserved element locus uce-2190,
            sequence.
ACCESSION   KCLA01003287
VERSION     KCLA01003287.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 415)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..415
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53592upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>415
                     /note="ultra-conserved element locus uce-2190"
BASE COUNT           99 a           70 c           80 g          166 t
ORIGIN      
        1 ttgctttgtg atattctgat agagtttttg tatgttttac tgtgactgag ggcttttttt
       61 cctcctgact ggccatacag aaccatgagt acatagaaga agtgtacttg gagaatagct
      121 atggtcctct gtggagctgt tgccaaaatt cctttttctt ctgccatttt acttctatgg
      181 ttgttgatta tttgtctgaa taaatctggc agctgtttgc tatgtttaat agagcagaaa
      241 ggctactctg aataaagcta tttgaaaatt tgtttatatg aagtatttgt aaatccgtga
      301 aggtctcttg gcatttctgt atctctctca ctgtcttcct gaattcattc tttcatgcag
      361 gacttgatgc tggcaaattt atcatagatt tgaaaacctt ttctattgca tcctt
//
LOCUS       KCLA01003288            1053 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53608upu ultra-conserved element locus uce-276,
            sequence.
ACCESSION   KCLA01003288
VERSION     KCLA01003288.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53608upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1053
                     /note="ultra-conserved element locus uce-276"
BASE COUNT          343 a          198 c          206 g          306 t
ORIGIN      
        1 taatgggtct ccttgctatt gatttcttac atgaggagag agaaagagtg ggcattattt
       61 acccacaggt aaagtaaaaa ctataaaggt aaaggctttt ccatgcaata tacccctcaa
      121 acataataat ccctgagatg cttattttag taaatgaatc agtcacagtg agccaaggaa
      181 aggacacatc tattactatg ctataaatgt taaagaccct atttagaacc tttatctcta
      241 gaagaaacaa agcaattttc actgatattt gtacgacatc aataatagta gctcgctaac
      301 tagcaggtag acgttactac tgcagtttgc tcaattcttt ttcacgggtc atcagggaaa
      361 ttcatctaaa gcaaccaaaa aaccatagat atgtctgcat catattaata agaagagaaa
      421 acaaggtagc tgccaattgg cagcagagta tgttttggtg gtttgataag gatactaaag
      481 agtttatgat gtgacagatg tttcactaca ctattgtgaa atgaatagat tatgagaagt
      541 aattagatgt acattggaat caatgctgtt atcatcgagg ccttcgggcg atgcaataga
      601 tgagagtcat ggcagcaggt ggtccaatgg cttggagaca ggaagacaca ccgcaggaga
      661 ctgagtgaca ggtttcacag atccaggggg tgagagatct gagctattgc ctgcatttgt
      721 aatctttact catgtataaa taataacaac tacactattg acttcatatg ctatgtcata
      781 gcctctgcta ccccctacac acacacttac acacatatgc aaacaatcgc acatattctg
      841 caacttttcc cctctgttaa atctatttta ttttcacttt aaaacatttg catttgtccc
      901 tttgattcca gtgccagcgc aatgttcttt gattaaaaca cttaaataag gaacctggca
      961 gcagcttcga atgcagtgca gtgtattgtg ttcccggtgc agaagcgtat atgtattttg
     1021 catggaagac tgaaaataaa atgcagtcga cac
//
LOCUS       KCLA01003289             966 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53623upu ultra-conserved element locus uce-5916,
            sequence.
ACCESSION   KCLA01003289
VERSION     KCLA01003289.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 966)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..966
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53623upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>966
                     /note="ultra-conserved element locus uce-5916"
BASE COUNT          284 a          168 c          184 g          330 t
ORIGIN      
        1 taaaggttaa agcaagaaaa agtgtaccat tttagaataa attgccaagc cttcctttca
       61 gaagtgatgg catcattaga tttctctgcc attattcata ttgctgttta ctttagaggg
      121 ctagagaagt cccttatgat ttaagtaaag tttgttatgt tttactccta ttggcgagca
      181 aattcctcaa ggataaaata tctgtaaaat ttctctgttt tatttcactc ctgcttatgt
      241 gattaaacat gatttgtggt atttaatgta atcagagtat cattaatttt ctgctaaaac
      301 gtttctgcat atggccacgc aaaatcagta tctaccgtgc catcagttgg ttaaggaatc
      361 aaaatgagga tgacagtgtt tttgtaaaga agatttctct gaatctttcc gcccacaggc
      421 tctgttgaag gcagtaaata gtccattttt gttaatgaag cttcactcat acagctggga
      481 ttgtttaata ttttacgagt gttactttgt tttgctctca acgatctcag gcagttaagg
      541 atttatgaat cgtgtttttc tcagcccatc tgcggtttcc tatcttccct ggccttgaga
      601 atatgtttaa atttattaaa gcgaagcaaa ggctcattat ttcaaaggag agccaaagtg
      661 acacagtgaa ttggttatta atggaaaggc actgccatag ggcgattgaa atttaatgat
      721 atcctacaag aaaaaaatga gggtgtcact ttccaaaaag tcatgctaaa tgccagcctt
      781 tttaaggtcc tgccgctaat tttatgcctg cgcacagtaa tgttttcaaa agcgtttagg
      841 aaacacggac cagtgactgt actgattatc cttttcacct tctcgcctgt tccaaatggg
      901 tttgtgcagt gagcgattta atctctaaat atagggaacg ttaaaaaaaa taacattgct
      961 gttttt
//
LOCUS       KCLA01003290            1113 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53639upu ultra-conserved element locus uce-700,
            sequence.
ACCESSION   KCLA01003290
VERSION     KCLA01003290.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1113)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1113)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1113
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53639upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1113
                     /note="ultra-conserved element locus uce-700"
BASE COUNT          322 a          240 c          182 g          369 t
ORIGIN      
        1 tgttattttc ttaaatgttg agattccacc tacattactg aattttgtct gagtcttttc
       61 acgcttagtc acaggctaca cagtaaagtt tttttcatcc ttattcacat ggttgttcct
      121 ggtgaatcag gaaaacatca catatactcc tttactaaat tacaagttca gctgccaatg
      181 atggcagaca ttcccacaat ttacctgtac agaagctttg gaaagcaata ctaaatccat
      241 ggtttgaatg aagtaaacta tgcaatccaa agtctacata aaagctttac tgatttgaaa
      301 ccctgtggct aaagaaccaa aacaacaaag aaaatacaac aaattaaaga aaaagttctc
      361 tttcctcacc catccccacc taattttttt tctttcatcc atggtcagat tagcaagtca
      421 gcactgtcaa taaataaact agagaagttg tttattttta tgtactactg agaacagtgt
      481 cgtcttgtgg ccgttctcgt agactgtgtt ggtttaacaa gcgtccaacc cttttgtctt
      541 gttgtttttt gtctttcctg ctccctgtcc ccttgttccc acaggctgtg cgtttgtcac
      601 attttctaca agggcaatgg cacagaatgc aatcaaagcc atgcaccagt ctcagaccat
      661 ggaggtacag tactgtatca tttgcccttt ctttgttttc tttgtgcaaa tgattgcgaa
      721 tggtaaagcc acgctctcct ggaccagatc agacacatga caatcacaga tttaaacttt
      781 ttaccaactc actctacctg tttttgtgaa gcttattttt tgtaatgacc tgaaagcaga
      841 caataaaggt gctatgtggt acccaaatac agcttttaat ctgttttcag tggtatttag
      901 cagaaagtaa aattgccgtg aataccgctc ctcagtcata ctctgaggat atctgatcag
      961 taaaatacct ttaatcttaa cacacacact cccaacgtgt ttcttttaag tacattttta
     1021 agtgtgctgc tctgacaaaa agctcaagat atttaacctg gccacgctga gttactagtg
     1081 catgtgtttt tctgcaacta gaatatcttt tta
//
LOCUS       KCLA01003291            1089 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53653upu ultra-conserved element locus uce-6782,
            sequence.
ACCESSION   KCLA01003291
VERSION     KCLA01003291.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1089)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1089)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1089
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53653upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1089
                     /note="ultra-conserved element locus uce-6782"
BASE COUNT          345 a          218 c          189 g          337 t
ORIGIN      
        1 aggaaccact ctgaggagag ggcagcaatc tgtcaaagca gtggttattg tctggagcat
       61 tacctgtctt gcaggtgtta ttccccttca tttatcttcc agcctcgatc tgatggattg
      121 gggattattg ctcttttggc aatcagatcc tgaacatgtc tcctatttaa ctctgggctg
      181 taaaaaaggg aaaattaaaa accattatga gacccccata taattaatct tcagatggct
      241 tgaagctcaa gcacgtaatg tcctcagtac actgtctgct ataaccagta acaggagggg
      301 aaaaacagcg acatatcaat atgctttatc caagggaaga aattcccgtt gtagcattaa
      361 atataaatac aatagtgtgt tggcataatg tagtaaggtt cctgtactat taaaggcttt
      421 gttctaaagc gtatctgtgt acacaatgag atgatgaaca cagtgcatca catagctaaa
      481 tttaatatat gcaggggtat gatgtttgca atgcatgcat ttcagcaggt cccattagtg
      541 cgcctttccc ctccagtgaa aacagaatga accacagccc cttctggttt gcataaagca
      601 aacaaaatta gatttgcttt gctgaattga aacccgcttg ggattgtgag cctctctcgg
      661 ggacaaatta cttcaaacaa tccctttgta ccataacaaa atcaaaaaat tcaggccaat
      721 caacatggct caaaaccctt aacacaagaa ttaataatac aacctagtct atttttattg
      781 cttctgagct acagatcctt gttttaatat aattacactt atttgtggtc cacatgttaa
      841 ataagcttgc atatgttaac taatgtgaca taaaacaact tttataattc cactattgca
      901 accagttttg ttccccctag agtaacatcc ctaacatagg acaagctaaa gtttaattgc
      961 attaattcta tatgatgatt ttcttggcct atatagatag aataatagac atctctgaag
     1021 ttaaatatgt tgaaaatatc tcatctaaat acatttcctg gtgggtttcc agatctcacc
     1081 tttccttca
//
LOCUS       KCLA01003292             967 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53669upu ultra-conserved element locus uce-7912,
            sequence.
ACCESSION   KCLA01003292
VERSION     KCLA01003292.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 967)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..967
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53669upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>967
                     /note="ultra-conserved element locus uce-7912"
BASE COUNT          283 a          192 c          201 g          291 t
ORIGIN      
        1 acaaacagaa ataaaacagg tattgtccct tgagacgctc ttaaatcagt cacactgcta
       61 aattcaactg gtgggattcc agacctaaat cctatataga tagcaagaaa tggttgcgtg
      121 cgacagaaag ctttggtcat gctgcatttt ggtatcaaaa ataaagggtt gtctttccca
      181 ggcagcttgc ctttggtgaa cgagctttgc agcgctcaac tgttgtaggc tcttcagaag
      241 tttcctcaat gctgtgccag ggtgcaggtg gggtgtgcag tgctgcacag tcagagacgt
      301 ataagtatgg aaacaacaat tcattgctag tgtttgtttt tcactcctct aaatacaatt
      361 agcacccaaa agtttcaagg caaagaatat gcattcctaa aacatctctt ccgtgtttat
      421 gctgtggcta ccacatttgt ataaacagaa aattactcca ttcatgcttt attagctctt
      481 cttttgtacc acggccttga ccccagtcat cataaattga gaaatagtgg ggaactaatg
      541 gagacagatg ggaatatggc ttgccattta ctcaaattgg taaagtaatt aacctcaagg
      601 tgctggtttg caagaaaaat tgttggaata tctcagggcg ccggtaaaca gactcctgct
      661 ttaaccactt ctgacaactg catcataaac tagacttatt ctgttcaatt gacctgtcaa
      721 cgtcttgagt ccaaataaag atttgtatta caatgcactt gctgagaagt gggagaacac
      781 tactgctgct tcttttcaaa tgggttgctg ttctctctct gctagatagg agctggaatg
      841 tcatatattc attcttcagc cattatattc cttagaaatc ttccattact gattgtgtga
      901 cagctttgtg acagcagatg gtagtcattt ggcttgagaa aatgaaatga aaaaacatgg
      961 gccagac
//
LOCUS       KCLA01003293             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53685upu ultra-conserved element locus uce-5758,
            sequence.
ACCESSION   KCLA01003293
VERSION     KCLA01003293.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53685upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-5758"
BASE COUNT          262 a          123 c          163 g          280 t
ORIGIN      
        1 aaagacatac attacagaca aagcttgaat gtagaaaatc cattgcaagt gtgaaatttg
       61 tcataaaggt tgttgtcccg tcttatgtac caggtgttta aaaacaaggt aaaatgagta
      121 tggcatcata aaacgtgact gcagttagtg tcttgcagag ctacttaagt ccttttattt
      181 ttctaggcaa aaaatcaggc aaggcaagga ataaaagaag tgaagagtaa gttaaagcac
      241 aaggtatggc gtatactttt tacttataca ttgcttccca tatcagtttg aagtttatat
      301 gctacaaatc acatgagact tgggttttta atgacttttg aaatatgctt agccctttgt
      361 tcaacaattc atttttcata acaagccctc tggcaactat ctgtcattct gtgcatccac
      421 tgagtaatct ctttattgtt tgcatatttt atcatagaac aacagaggtc ttcaaagata
      481 cattaacagg atgtatgttt tcataaagtt gattgctttg atatcacaat tgaagccttt
      541 gcttcaagct gagaatttga gatgggattg tcttgcagta cagtgtattt cagaaggtgt
      601 agttgtccgc tttgagatat gtgaacagtg ccagcattta gaaatgaagg agcagtttca
      661 ttttgcaaaa acaacggtgc agaagtatca gaaaagatgt tttaggtttt tacagctgct
      721 tttcccattg aaaattgttt ccatgtaaga attttctgta gggaggggaa actgtgtttt
      781 agatgtattt tacgttattt taagaaaact ttcaaaaata ttgcctag
//
LOCUS       KCLA01003294            1114 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53701upu ultra-conserved element locus uce-6874,
            sequence.
ACCESSION   KCLA01003294
VERSION     KCLA01003294.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1114)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1114)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1114
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53701upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1114
                     /note="ultra-conserved element locus uce-6874"
BASE COUNT          323 a          267 c          214 g          310 t
ORIGIN      
        1 aggttttcac agactagtta attagtgaat tactacctct cattctgtcc cagcatgtat
       61 atgataactt acacaatcaa acatccacag ttttacaaaa cccaggtgac actgatttcc
      121 aacatttcag tcaccactta gagcattagc aatccttcta gcaagggccc aagagagcag
      181 aggcaagaac tatattttag gctgtttata ataggatcct catcagcaga tatctgaaac
      241 tggatattta cttaatggtg gtactgggtt tcaattacat gtcttaaaag ccagcagcaa
      301 atttttgcaa tatatttcat aacgaaagac ttgctcttct gaaataccaa acaagtctgc
      361 acccacatgc aatactacgt ctgagatcat tctactccca ctggtgaaat actaaggttt
      421 tggaaaagaa aagccatctg gattgccaga tgtggcagaa cgcagctcag aagcaaagtt
      481 cagagattcc atttttatcc aaagtgctac ataggaccat tgctcctcct gtcctgctga
      541 tctttacctt atgttcctcc gcatgtgaga cggtttctga gccctcttct ttttggtgtc
      601 ctcagaggcc aggctcttgt gctggttctg caagagtcgc tctgcccgct cactctgaga
      661 tgaggtagtt gaagttgagt gctgccattc tccatcctcc gtgtgttcaa catggtcacc
      721 actgaacaca gcttcctggg gttggtctaa aagacagaga agtcatgata taagaatgac
      781 tgtgccaggc tggcagttgg cttttccttg agcattcact aggaactaag cgatccctat
      841 tcttgctcat ttgtaagcag gtttctctga gggccaaaac tgggctccac tccaacagca
      901 actcaaaaag cattatgaag ttttacagtg aaaaaaactt cccagtgaaa gccaagatta
      961 acaccagtca acacagccca gaaacgtccc aacaagaaat caagacaaga ttattccagt
     1021 ccatgtttag catttgctgc cctgaagggc ctgtttcttc ccaaggcctg atgaactcca
     1081 atcaaaacac agaacctaaa tctccttttc ttgg
//
LOCUS       KCLA01003295             898 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53716upu ultra-conserved element locus uce-84,
            sequence.
ACCESSION   KCLA01003295
VERSION     KCLA01003295.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 898)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..898
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53716upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>898
                     /note="ultra-conserved element locus uce-84"
BASE COUNT          274 a          157 c          145 g          322 t
ORIGIN      
        1 aatgataaaa tgcggaatat aatttgctct gaaatacatc tctttaaaag taatttcaca
       61 gtaacttttc aaccaatttc ttactagtaa ttgtttttga aggtatttcc cttttagttt
      121 gaaatacttg cgtgttttta agacgttgac ttgaactaca tatttcatat tcctaaaaca
      181 aaggtgaagc ttttttcttg gaagctcatt gcctgattta gagaatagaa gcatgcaact
      241 gctctgagag aaaacaggtg atagtgaatt gtgtgtatta acctggtttt tcttttcttt
      301 ttcctttttt tccaggagag gaatagaaac aaacaataac tctccagaga tgtcctgcta
      361 gaattacaac actaatgacg tagactctgg aaatgcctaa tatgtctaag aagacgttat
      421 caaagctttc tcctgcttaa ggtgacatct ttgaacactt taacacaaaa ttgactcttc
      481 ttgtaatggt tctcatcagt gcatctgccc ttatactctc tcaccaaaca cacttgagaa
      541 ctgtaccttc gtcaagcact ttctgtcctg aagcttttac cagtatctgc tgtcttttgt
      601 atttatgcat cctagctaag gcacaggaga ccgaacgaat gaaaggattc attaactctt
      661 tgaatttgtt aaatactaac ctttaaccat tagaagtggt tcaatgatgt gagattcaca
      721 ttgcttcaac ttaatttttt ctttgttgta gtttttttaa ttgtcagttt ttagctatca
      781 acagattaaa aagaaatcat gccatattta gtcctggagt aaaactcgag tctaaatgtt
      841 catgtgaaaa ttattgtagt aatcttttaa tatggcaaag caactttaag ctgcagtt
//
LOCUS       KCLA01003296             993 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53732upu ultra-conserved element locus uce-7219,
            sequence.
ACCESSION   KCLA01003296
VERSION     KCLA01003296.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 993)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..993
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53732upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>993
                     /note="ultra-conserved element locus uce-7219"
BASE COUNT          244 a          256 c          231 g          262 t
ORIGIN      
        1 cagccccagc acgcccgtcc ctggtgggct cctcaggcag ttaagcaaac gaagcagcag
       61 cctggctcag ctccacctac ggcatcttca gcgaggtatt aacacctgct tttccattcc
      121 ttccttcacg gctctaaagc atctcctgtt ccctgctgag cccgagcaag gtctgggggc
      181 gaggggagcc cacggcactc cccctcagaa ggcagtgaga ttaaagctgc gcttcccctg
      241 gcctgcgccg agagccagcg gcacggctcc cgtttctaat ttcaccctct ggttctcccg
      301 agtaaataag agaggggaaa gtaaagtttt ccaccaagag aaactgtcag tcgctaggac
      361 gtgatctttt cagctcatgc atcctaaatg cacgcggaga tattatctgc gctttctatt
      421 tagcgattta attatatctt tgcggctgca gagtggcagt ggtttgcggt aatcatcagg
      481 tgaaagcctt ctcacattaa tatgctggaa tccgatgtgt taatttgatg caactttgcg
      541 ctgacaatat gtgattaatt tgttcgcagg ctagcagcgc tcgcagccct gacagttcca
      601 aatgctgggt ttctctctcc gtatcgccgg ctgacacgcc ttagcccact gctttgctag
      661 gaccactgct aatttgtaat gaactggctt ttcagggggc tccttcattt ttaattctgt
      721 cagtgtcacc tccttgagga aaattataag tttccttagg tgtgattact gccaagtgct
      781 gctgataaga ggtttgagaa aacagggttt cataaagaag tcagtattta atctgctgaa
      841 acagatttat tgcctctaga cagataaata caatagcaaa ttcttcctta aaagcaattt
      901 cgagttctcc tccaagccca tgcaagagca cctagacaca gcggccgcct tttgagggga
      961 aaacggtgcc aaaagaaact cagaaaggca gcc
//
LOCUS       KCLA01003297             522 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53747upu ultra-conserved element locus uce-6579,
            sequence.
ACCESSION   KCLA01003297
VERSION     KCLA01003297.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 522)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..522
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53747upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>522
                     /note="ultra-conserved element locus uce-6579"
BASE COUNT          156 a          105 c          100 g          161 t
ORIGIN      
        1 attagcacag cctcaaccct cagctaaaca gccttgtttg catattgaag caatagaatg
       61 tgaaggtgtt aaaaaggaag aattgcagcc gctactcctg actgacatgt ctatctgggc
      121 tcttgtgttt acaagagaat aacgaagctg ccccaaagcc cctactgggc ctgattatta
      181 tgcagagact tcttagatta tgtataattg atatccattt tccctccagc taaccaatgg
      241 cagctctcag gagtaatgct cactctcctg catcttacca accaagcaaa cactggaaat
      301 tgctatcttt tactaggctt aataattttt aaagaccaga aattgacatt tacatttttc
      361 agaagcacag atgactgcac tgttgatggg gttttcctgc taataacaat caaacagtgg
      421 agatttctat ttaagagtaa tgcgggtctg gagattttgt gtgttgttta ctttatattt
      481 acaagcacac attcaatggg gagcatatat aatgtgtgct ta
//
LOCUS       KCLA01003298             384 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53777upu ultra-conserved element locus uce-2848,
            sequence.
ACCESSION   KCLA01003298
VERSION     KCLA01003298.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 384)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..384
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53777upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>384
                     /note="ultra-conserved element locus uce-2848"
BASE COUNT          124 a           84 c           85 g           91 t
ORIGIN      
        1 gaactcggct ctggattagt gcagggttcg tgtgtcctga cagacagcaa taaatgagaa
       61 aacgctgtct gcagtgcatc aaacgagtgc actcagaccc gcacgatgag gtgatttttt
      121 ataccaataa agacaaatca gtggagaatg tgaactaagc tgctctaatt ttcttcttct
      181 cttctgtttt caaatgtgtt ttccagagtg gatcgctaaa ggagccagag ccaagcaaag
      241 tcccacctca gcgaccacca cctcaaggtt gtttacagta cattctcgac tgtaatggcg
      301 ttgcagtagg accaaaacaa gtccaggcta cttagataat tgagaccaaa cacgagggtt
      361 aaagcaaaaa aacaaaaaga agca
//
LOCUS       KCLA01003299             971 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53793upu ultra-conserved element locus uce-3055,
            sequence.
ACCESSION   KCLA01003299
VERSION     KCLA01003299.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 971)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..971
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53793upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>971
                     /note="ultra-conserved element locus uce-3055"
BASE COUNT          339 a          161 c          180 g          291 t
ORIGIN      
        1 cattatgtat gtcaaaatcc ttgctgattg tttttccgtg aggatttagc ttattgattt
       61 tcacaagcaa aaccacctct agcagccatt cagacagcag ttacttggaa gctccagcat
      121 tcaggactga aaacaaaaac tagatattcc cttaataaat ttacagaatt agaaaaactg
      181 gacatattaa catacatttt tctattcatg gctgtaaaat gacaggattc ttgtctcatc
      241 aaatttgcat tgtggaatct gaatatagta tgattaggca ttattttaac aactacatta
      301 caatacaatt taaaataaaa tggcccttca tatcacacta acatcagtgt tttaaataac
      361 aaaggggatt taaaaaaaaa taaaggaaag gattagcatt tagtttcaat cagtataagc
      421 aatgctgtac cagttggttt ctcaaagatt caggatttta ttaatattct agagatgcat
      481 ttgtgttgcc tctgggtaca ctgaaaagcc acttaaactg cacttaaagc agcactacag
      541 gatcaaattg atgtgcatca accatttaca ataaaacttg attattataa aggcatacat
      601 atttgcataa ttacatgttt gattttttga taatgcagca cacactacaa agtgttgctt
      661 catgtagaaa ggcatcgtca aaaagcacca tctgctgtag tgtttaatgc actgcaatgt
      721 ttgaaacatt ctgaaggtag atatgcgtga atcaaagggg aaagcaaagg agttttgcta
      781 caagaagagg ctcggggctg gaggagaggg catcatacag tgtggacttt ttgttaagct
      841 gtcatctgtc tcttgtgggc tatttttaaa ttaaactgtt ggggtagaaa ggtaaaaaac
      901 aacagagaag cacatcgtcc agtccacaga acataggatt cagaacccaa aagcatttgg
      961 cataaacagg t
//
LOCUS       KCLA01003300            1157 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53808upu ultra-conserved element locus uce-4535,
            sequence.
ACCESSION   KCLA01003300
VERSION     KCLA01003300.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1157)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1157)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1157
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53808upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1157
                     /note="ultra-conserved element locus uce-4535"
BASE COUNT          343 a          218 c          240 g          356 t
ORIGIN      
        1 cctgttggac caagagatga gtgtatttct tttgccttca tcacggtctg gtcctataag
       61 tgtctgtgtg tgaaacagtc cttgaagtca atgagccctt aatgctgtta gttaatatta
      121 gatatctatc agcattttat cttagtgagg gtgtaaaata ctggcttaga acaatgaagt
      181 agagttcctg gcctcatccc aatgacttct taaagtagtt ttcccagcag tatatggggt
      241 ataaaattac catggtattg atggagctgg gaggctggtc ttagtcttga tcaggggtct
      301 ggagatccct gcaaaaagca gcaaagtaaa tgccaagcca catattgtaa agtaacaaga
      361 agaattttta ttattgcttt ttttcccctc tgtattttcc ttaccatttt gatcagatgt
      421 acattgttta taaccccgag tttactggcc ccaaatatca ttacaacatc tgcactatga
      481 tatatgttcc gttgttaccc ttttaatgga taaaaaaaga tttaagtact tcattctgtt
      541 gcattttgac agctgttagc catcattttt ccattcacct gcatttagca atcccataaa
      601 gggaggcaat ctcagaacta acaagagctg ggcactgcaa ggtgataatt ctgtatcact
      661 ttggcctata aatacctgac aggctttgcg ctgagtcagc agtctgtaac aaagtggcag
      721 ccatgccctt ttatctgtgt gagtgtttca cagcaattgg actatcagcc cctgcagtga
      781 aaatccatag tatcgatcag gctatttctc cactgtaatt cttttgtagg aaatccctga
      841 tgacaaattt tatctgcacc actttttgat cgctggtttg atgtaagcga tctccaaggg
      901 cagagttaag ctcctggccg ttccacatta tcaagcacta gctttattta ctgaaactac
      961 tgttgtggtc accaaggaaa ataaaaaagt gagagagagg aaggggggtg gaggaggctg
     1021 aaaattaaga gcaaaataat atttcaaaag gcaggagcaa gaggaaaaaa acatttgcat
     1081 cagctaattg atccttaagt gtgagttaca ggacatgtac cacatgtgtg aacacataaa
     1141 taacagaaag atgtttt
//
LOCUS       KCLA01003301             915 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53822upu ultra-conserved element locus uce-6724,
            sequence.
ACCESSION   KCLA01003301
VERSION     KCLA01003301.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 915)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..915
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53822upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>915
                     /note="ultra-conserved element locus uce-6724"
BASE COUNT          324 a          146 c          150 g          295 t
ORIGIN      
        1 gtattaatag tgtatatcac acaaccccaa gtgatgttca caaggactgt tttctaagag
       61 acagataaaa ataagcgtat gtctgttgta gtcaaaagac agatttcaga tcccgtaccc
      121 agttaaaata taaatacacc aaaaataaat atgcgcagca gatttaacac agaaagaact
      181 gaagaaaact tcacaaaaac agagcatata aaagtagatg tcattattta aaagtttctt
      241 gacacacata aaattctgaa gtattaatga atatatctga taaataatga tgatagtctc
      301 catatttctt tgtttaattc tcagttttct tgcaagacct tcttgaagtt tggttgtaat
      361 ggatcattac gtccataatg tgctcaatgt tggagtgaat tttgaacagt ttttaggctg
      421 catactgttt tcttccagat aatttactgg attaaaatta gcagtgtgaa aagctgtaga
      481 gaaatctaaa tgcctgccaa atcaaagaaa taatcacatt tttatgaata tttaatatca
      541 tagtcatggc aaataaggca agtaattagt acttaccata aatttgcaaa gtattatttt
      601 atgtaaatgt tacattctac tagtttgtta tgaattattc atcatattac cagacgctga
      661 cacaaaccag caaacactca aatctatgtg ttattagttt acttatctct aatgatattg
      721 tttagagggt atttttgtga gattattttt ccccaacggg atggaaacaa gaagaaagtc
      781 atttaaagtc acctactgca cattccaata ttggagaaac ttgagatgca aatacagaaa
      841 atgcaggttc tctcatgtgt acagatgaat cgctctcggc tctgccttgt gaagaccatg
      901 caagcgatcc ctgtt
//
LOCUS       KCLA01003302            1054 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53838upu ultra-conserved element locus uce-2116,
            sequence.
ACCESSION   KCLA01003302
VERSION     KCLA01003302.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1054)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1054
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53838upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1054
                     /note="ultra-conserved element locus uce-2116"
BASE COUNT          280 a          204 c          248 g          322 t
ORIGIN      
        1 aaggagggaa gggagaaagg aaacttgtca gctgttgaga gaggctggtt tgctgtggca
       61 ggagcaccag tttaaccatt agttgtgcag acccctgagc catcacttcc agcagggaga
      121 tgtctcgccg catgcagtgc aaaatcccat ctgataacac aagaggccct tttaggtgct
      181 gctagagctc cagtccgacc agtaacacac agctcactga atcactaatt ccagttggaa
      241 agttatctgc tgtctctagc agtgaaatcc tgactgataa gcgaaaaggc tcatctgctg
      301 gtagcagagc ctccagttta tcagcgtctg accagctcat aaatcagact agtgtctgtt
      361 tttattttgt tttatcaaaa tttatttcta tcattgtaac agttaatact ttaataagag
      421 aacttagctg ggaacattag gaagttagtt agagacattt tgcaggcgct ttttcccttg
      481 tcagtgacaa ggtaaggtaa tcctatacac aggctgctat tgtgagatga gaaactggcc
      541 tccttcactg ccagagacca gatgcacctc tctctatcct aatctgtaaa cgacttaaag
      601 gagccttatc tcggggctct tctgcttcat ttcatgcttg atttacttta atttgtctga
      661 tagggcacaa ggatttggag acggcccatc tttctgcaga aaatgttcag attttttttg
      721 cttggcattg ttgtgttggg ggttttgact ttttttatgt ggaggaaatc ttgctccagt
      781 gcagcaagct gcttgagtgt gtttagattt aagctacccc agcagaaaag agtttgtgaa
      841 gtggtatgat tgtgtgatgg gccacattta cattgaaatc acattatacg atatatctgg
      901 actcctgaag ggagcagtgc agtggagcgc ttgtgcccac aagatacttt gaaagggcta
      961 tatatagtgg caacaattga tacgagattt tacaggagac tttataaata tgtaaatggc
     1021 tgttatctga ttgggttctt tggctacaca tctg
//
LOCUS       KCLA01003303             918 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53854upu ultra-conserved element locus uce-4908,
            sequence.
ACCESSION   KCLA01003303
VERSION     KCLA01003303.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 918)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..918
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53854upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>918
                     /note="ultra-conserved element locus uce-4908"
BASE COUNT          274 a          154 c          179 g          311 t
ORIGIN      
        1 tcccaaagca agtagtattc acagctgttg aaatatattt tgcagtcagc ttagtggttt
       61 tattgcatct caggagtatg taaaagtccc ctattcaagc cagtgctatt ttgaaaaggc
      121 actgatttgg agtccttcga ctgccatcgt tttccagtgc agtgaaactt ggataataaa
      181 ctacaataag caacaattat gaactaatac ttcaagatac agttcattat gtcattgtgt
      241 gcttttaaaa tcctatgctg gttttgctga tgtttttcag ttggaagtgt atctataaaa
      301 gtatgagtaa ttatcagcac atgcatttat cactaaataa actttgcaca agacagcata
      361 ttgtttactt aagcagtata atactgggaa tggaagagag ctctagaaca taggattaca
      421 ttgccagaat ggcactattt attaagctat gataacacta atgttcctct ttgatgtata
      481 gcatgtgcga ctacagctga acttgtagag agccttaagg atgtttcatt gaacatttag
      541 tatggcagca agccagaata catttagcct aaacccagat gacaggttgg taatgaggta
      601 gtgattgatg accactgctt ccgtatgaaa acctgcttga tatgctgggg gggaaatgca
      661 ttgctggctc ttttcatttc actccctctg tattagttat tctttctgtg gaggagtagc
      721 actggctgct ggttattcag tcctggtttc acttttagat gagaatcaaa tacgcagctg
      781 agattttaga agtggagccc tgtggctaca tttatgtgta attaaaatcc taatttcaat
      841 ggatttttat tataaaaaat aattgcaatt atgtcacctt ataatattct tattacctat
      901 ctctgtgata ttacaagt
//
LOCUS       KCLA01003304             466 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53869upu ultra-conserved element locus uce-3079,
            sequence.
ACCESSION   KCLA01003304
VERSION     KCLA01003304.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 466)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..466
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53869upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>466
                     /note="ultra-conserved element locus uce-3079"
BASE COUNT          126 a           96 c          104 g          140 t
ORIGIN      
        1 ctgcggctcc ccaattcgga aacctttaca gatctgtgag ccttgaatcg acaaatcctt
       61 gctattaata tgggatatgg acgagtggca aaaaaactga atgggaactg cgccgtagct
      121 ttgggagaaa ctaacgatgt gcttcagctc ctgccattac ggggaaggag agggggggga
      181 accccttctg attaataact agcagggtaa tgttgagggc tttttctgcc cgattgcctt
      241 tttgaattag agccgatttc ttcacacttc aatagggcct gtctctttta aaatgactga
      301 cagatttgtt tctccttttt tctctccctg agacttaatg atgtaaattt tctaattagt
      361 taaatcacgt tgcttaaagg ccttaatatt taccgggcaa gcaacgatcg tcgcgttcga
      421 atctctcgaa ataaccagcg aaataacatt aggcttttta aagagg
//
LOCUS       KCLA01003305             828 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53885upu ultra-conserved element locus uce-2283,
            sequence.
ACCESSION   KCLA01003305
VERSION     KCLA01003305.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 828)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..828
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53885upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>828
                     /note="ultra-conserved element locus uce-2283"
BASE COUNT          272 a          143 c          143 g          270 t
ORIGIN      
        1 tttcctgaaa gaatctcttt gttgaggaaa tgaaagatga acaagctaaa ttatataaaa
       61 tacagttttg gatcccagtt catgcaatca cccttgccca tataacacca atgttggtta
      121 aaagtggaac atgatgttca gagcagttcc tactgtttca gagggatgag aaaataaaat
      181 taacagaaat aaaaagtctt ctattttggt atacttaaca catacagtta tctacacgtc
      241 ctatatatca tttaacaaat tgctttgcaa ttcttacagg gcgtggtata atgactgatt
      301 taaaatcact gcattgctta aactgcattg ttcttcatca agttgagtca tttttatgtg
      361 aagtgtcaag ctctctaaca aataactgct gccagacaaa tcaagttcct catcttaaag
      421 ctacggctaa atagtttata gctttaatct gctcactgag gtgtgcagtc tatgacagta
      481 attataaatg caaggagaaa ttatagctga atgctttaac tgcattagga gccatttgat
      541 gaacaatcat gattgcctgc tcattttcaa caatagaggg caagttagtg tcagtgcatt
      601 agaggatttt cagttctgct ctgctctttc ttccatttac cacagaatgt cagttgtctc
      661 ctataaagta gaaaaaaagc actgtagaag ctttaaactt gatggttaaa aaaagacaaa
      721 ggaggaaaca cagagaaaaa ctgtttatca ttatgactca tttttttgtt ttgcagcagc
      781 cttactttca aattagttca tctcaggtag ctgcttgttt acttatca
//
LOCUS       KCLA01003306             867 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53899upu ultra-conserved element locus uce-5174,
            sequence.
ACCESSION   KCLA01003306
VERSION     KCLA01003306.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 867)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..867
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53899upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>867
                     /note="ultra-conserved element locus uce-5174"
BASE COUNT          243 a          170 c          195 g          259 t
ORIGIN      
        1 gctgggttaa ttgttggatc ttgacgatct tttccaacct gaatgactct atggtagcag
       61 gactctgaat ttgtaaacta gtagagactt tacagtagag tcttcaatgt tgaaactctg
      121 attctgagtt actaagcttg gaaaacacaa ttcatacacc tgtgtgccct agaaagtagt
      181 agtgccaagt cggaccccaa ggcccagtgt gtatctggtg ggtgttcaga ttgaagtttg
      241 gtgagaagag gggtgaaaac agccagcgtt ctgcccaaag gctgcactgc agggttggaa
      301 gtggagttgc ttgagatttt ccattaatcg cctgttcatt tcttccttcc cttccaggtg
      361 caagtgggaa gtacacctca ggaccaaaga attgtgggtt acatttcctg cactcacttg
      421 caagctattg caggtactgt cctcttttgc tctcctctgg tatttctaac acagtgcaga
      481 agagcagtga accagagaag aaacaagggc agacaagtct atccccaaag gctcatattt
      541 gcagtctcag agtaattaag tattattgga cacaaacaaa aagtagccct tgagagcttt
      601 tctttgctat gtgttatttt atcaaatcca tgactatcct tgttactcag catttagcaa
      661 ctcgtactgt gtgtagcaga acaaaaactt ggatttcttt gtacctaacc aggggttatc
      721 agaagacaca aattgggata gctttttctg tcagaaatca gtggctggaa ttagccaaat
      781 tcactgcttt tgatgtgaag gtctcatata tccatgaaaa tgtcactgaa ttgtttcata
      841 aaagaatgag ctgttcttga acaggag
//
LOCUS       KCLA01003307             666 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53914upu ultra-conserved element locus uce-3282,
            sequence.
ACCESSION   KCLA01003307
VERSION     KCLA01003307.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 666)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..666
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53914upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>666
                     /note="ultra-conserved element locus uce-3282"
BASE COUNT          197 a          124 c          135 g          210 t
ORIGIN      
        1 aaatgtatgc ctgtaggcca aatgttgaag gtttggggtt tttttctcct ctccctccaa
       61 cttatatgag atttgtacaa tgaattgtaa tagatggttc aaatgacaaa aattacagtt
      121 gtgtagccaa gaaaaatacc catggggctt tctgcctccc ttgtgcccag cctgaactat
      181 cagatcagcc ttctggactc aaatgcaaca ctgtcaatag gaatacatca tcttttttgt
      241 gatgtagaag agctgtcggt tgcaattccc attattccaa ggccaggatt ttccattagt
      301 gtagccacct gctgggtttc tctactcagg tttaatggag tctgaatttg aatttatcac
      361 catctgtggg aagacaggaa atgagaggag catcactaat tcctttcttc atttatgaag
      421 cataagcata atctttataa ggagataggc agaagcagca gtgatcaggg agatcgagag
      481 aatattttaa ctcatattga catcagagtt ccagaccaag aaaaatgctg tctgttcatc
      541 agccaattcc agcaacaaaa ggaatgtttt actttcctat gtagtgttgt tctaaaacat
      601 gaagatgtgg catgctattc catttttgct tccaaggaga tttctaaaga tttagtaatt
      661 taggct
//
LOCUS       KCLA01003308            1048 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53929upu ultra-conserved element locus uce-338,
            sequence.
ACCESSION   KCLA01003308
VERSION     KCLA01003308.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53929upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1048
                     /note="ultra-conserved element locus uce-338"
BASE COUNT          331 a          174 c          204 g          339 t
ORIGIN      
        1 gttttactgg tctaattctt actgagaaca aaaggcacct ggagatgtta actatatact
       61 aaaagaaaat gtggaatcta ggaaataata atactgaagc atgacttttc ttctcacagt
      121 tagttcattg ggaatggtat ctaatgaaga gttgtctaaa ggcttgcttg tttggaacta
      181 attaaagaca gatatcctaa atagaaaaag gatcatggga attacattag gtgtctgaag
      241 acttgttatt ctttcggtgc tctgagtaga ttgaggaagt tgttagggat tcaagaaata
      301 aggcaagcta ataaaaagtt ctatttttct ggttattggc caactattgt atttttgttt
      361 gcaataagat ttgtgccaac aggctagggg cttgaataaa acatttaaac atttgtgcat
      421 taacacatta tggtgaaaag agagtcttgt gctttcactc agtgcatttc agccttcaat
      481 taatgtgaaa gcactacaat gcctatgcaa cttctcttgc ctagtggtgc accatttatc
      541 attgcagttt tacattgacc ttgacaccca cttcattaga ataaagattg tctaccattt
      601 aggttacatt gttcctctgc acagagaccc catgcaaatt tctgttcaga tagaagagct
      661 gtgagcctgt cagaggtcat ctgcattaaa tgattgcagc tattttccaa ctgcttcttt
      721 tcattctact caattcaggc taggaggatc aatcaagccc tctgcctgaa acagtgggac
      781 tgctgggaat ataactgttt ttggtagtag tggatatgcc ctaaacagta ttaaatattt
      841 aatataaatt cattaaaggg catacgaagt cttcaaaaag atattacatt tagagtaaaa
      901 tttaaagggt tgggatcacc ttcctaggaa aaacgacaga gcaatgggca ccaactgcat
      961 aattttttaa tgcaggcaaa atttagttca tgaagttact taatgtttct ctcagcatgt
     1021 ttatttctct agctgccaca gaaaggaa
//
LOCUS       KCLA01003309            1048 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53945upu ultra-conserved element locus uce-1158,
            sequence.
ACCESSION   KCLA01003309
VERSION     KCLA01003309.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1048)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1048
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53945upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1048
                     /note="ultra-conserved element locus uce-1158"
BASE COUNT          307 a          226 c          204 g          311 t
ORIGIN      
        1 acggggaaat actctgcatt tgatgaggaa taacattgaa actgtagctg tagacattgg
       61 cgagctgaat gcaaatcgct acctggacac attccttaaa ctcccacaaa cccctttaaa
      121 gcctaaattt catgggatgt gaaattacgt ctacttaaaa atgcccaacc accccaggac
      181 tgtaaacacc cactgtacct gagtatggca cagtagcgtc ttaattattt cccaagccat
      241 tccagaaagt ccagcttttg taactttttg acatttcaga tttaaaaaaa aaaagaaaaa
      301 ttaaaacgtt gccaccagcc tgcgctatga gcagcctgta atagcagtaa aaaaaggttt
      361 ctgaactatt tgacaagatt tcttagtgct gaggccatat gctgtagcct ttaagctatt
      421 tcttcctatc agtttcatta tcacctgcct ctgagtctcc aatatcatca gtaagcacat
      481 gcagaatcat aattatgcca tgtacaagtt ctttgataac atgtacagtt ttcttcttaa
      541 ttctttatca aatgcattga tcgtggcatg tgtgcattga tccaggtcca ccatctggct
      601 gtgtgagata agcacagtgg catctttgca tttccactgt cattcattgc gctacaattt
      661 ggctgcaggg gagtagtggc tgggattagc cctgttctgc tacttacttg cattttaagt
      721 tgacacctct acagcggctc agaccacatt acaaactgaa acacatacgc acgacttagt
      781 gatgtgacac tcctcaataa gcttactcca ctagctactc aacaatctgt aattggattt
      841 gtaggaataa cagcaaaaga tttcctaaga attgctgggg acagaaggtg aagttttctc
      901 attattggca aaaggcaagg tatagatcct gggtgattgg tattttccat taaaaaaaag
      961 ctgccagcag tttgcaggac attttcaaaa tgggatgtgg ggaggtgcag ggtttgtgct
     1021 tgttctttcc ttcctcacca gtatccca
//
LOCUS       KCLA01003310             991 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53961upu ultra-conserved element locus uce-2277,
            sequence.
ACCESSION   KCLA01003310
VERSION     KCLA01003310.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 991)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..991
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53961upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>991
                     /note="ultra-conserved element locus uce-2277"
BASE COUNT          288 a          148 c          178 g          377 t
ORIGIN      
        1 ttagttagct gttaatttgc tgtttgatgt tctagcctgg gctatacagg aacaatgtaa
       61 cgtagcacaa tgtatgatga tgtgcagtct acaatcatct gtgtattttt atgctatact
      121 tttttttgag tgtttatttg tgttaagagt ctgtatctct gtcaaaggaa aagtacttgt
      181 ggaagctaat agaggaaagt ctaaattgaa aatatggtaa cattttaggc gtgaaatcta
      241 atagctaagc acaatggcat cagcttattt ttaaatacat gaaaatggtt tcaccatagc
      301 tggaatttta aactaatttg tttacgtttc caatctagct acttagaata attcagctgt
      361 tgttgtacat gtggtctaaa ttgtaaacat ttattaacag atggatttct tactgtggca
      421 catattatac cttgcagata cttggttact ttgactatgc tttcacagcc atctttactg
      481 ttgaaatcct gttaaaggta atgcattgtt aattgatcct tgttagcaca aaaacagctt
      541 tagcaataat gtttgtaact ttttgtttac cttccagatc ctagggtatg cagattatgt
      601 cttcactagt atgtttacat ttgagatcat tttgaaggta acaggttttt aaaggaagtt
      661 tgtttaaaag gattttcctt gtgtgtcacc tgtcaagaaa aggcacttga agtgttcttc
      721 gccttttctc taagcgatca aagctaaact ttttttaaac cagaggattt ttttatttga
      781 cagttgctca tagttttgat tggttatttt ttaccattga gtgcatgaag aagctgattt
      841 tttatcatga catcaattca ataatttatt ttttaccctt tttaaactta cagttgtcag
      901 aaaagggaaa aataattcac tgcgcatgag cttttcctga tccttgctct ggcatttcca
      961 aaagagataa tcaatctttt aaggagagcg c
//
LOCUS       KCLA01003311             503 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 53991upu ultra-conserved element locus uce-5254,
            sequence.
ACCESSION   KCLA01003311
VERSION     KCLA01003311.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 503)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..503
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="53991upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>503
                     /note="ultra-conserved element locus uce-5254"
BASE COUNT          120 a          126 c          108 g          149 t
ORIGIN      
        1 ccttttctgt ttaagcagac gactagaggg acctaacaac cttcctagca cttcctcagc
       61 ctgctcaatc ccaactctga agcccactgc tgtgttctct agagccatcg ggtgatacca
      121 ccagagatcc caggctgagc ccaagcaagc tgggacaccc aaggatgtcc aaggtatgcg
      181 atttcccctt gtctttccct gctctgtggc agctcttcca ccttcctgga tctggagagg
      241 gcagcagaga aaagcagagc atccttggct ggatggagca ggagcagctg cgtttcagta
      301 cccaaacact cttctctgtg aggagggtaa tttagagcaa ttacaccgat tattattgct
      361 tttctaatta gtgcttttcc tacagaatta gctgagtgtt tattaggagc cgcttgttgc
      421 caatagctta actgcttcag taccagtttt gatcaaacat tagaggggct tccatttatt
      481 tatttattta tttatctatc tat
//
LOCUS       KCLA01003312            1088 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54005upu ultra-conserved element locus uce-5219,
            sequence.
ACCESSION   KCLA01003312
VERSION     KCLA01003312.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1088)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1088
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54005upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1088
                     /note="ultra-conserved element locus uce-5219"
BASE COUNT          293 a          186 c          206 g          403 t
ORIGIN      
        1 tttccagaga aatttgatca gagcttggat ctaaaaaaaa taccataaaa agagcagttg
       61 cttatttaca gtttttctaa cctatgaaaa attacaagcc accactggag aaatagaaaa
      121 agttgacagg atttctaaac tgattttagt cagctgctgc tatagcagat ttagagaggc
      181 aaggacccca actgacaata tacttttcca cgctagccca gttctcttgt ggtctctcct
      241 gaataagcag tgttggaaga gtgaggcagt ctgaatggca gtgctcagta aatactggta
      301 ttagtcctac tctttcttct ttttctattg tcagtgatcc agtgcttatt tttccaaaca
      361 gttggtcttg ttttagtttt tgacaagttc tgttggaaat tttggtactg tgttgatttt
      421 tagtgtttct aagcatattc tataaagtgt atctctgttg cagacatggc aaacatgtat
      481 actctacttc gtgctgtgtc aagtggttta cctcatatga ttcaggaact gcaaaaccat
      541 atccatgatg agggccttag agcaaccagc agtctttctc aggaaaatgt gagtttcttc
      601 aggcggctga aattacttat taggttaaca ctcctgatta aatgtttaca gctttctgtt
      661 tattcttttt tgcttttgta attatgccta tatgaaattg gttttggaca ttatggataa
      721 atggtaattt ctgatcagca cgcttagcta tgcagcacat acctatcccg agagctgtat
      781 tttgtgatct aaccagaatc aactgcagct agatagttct ttttttgttt gttcaggact
      841 gtcatggcaa gtgggtcttt tggttccatg tatatatttt ttttccttgt ttcatagtga
      901 tatctgatgt tctggtacat tagaaactaa ttatatgcta tttgtaaaga gtcagcattg
      961 tgacctgatg tgagtatggt gtttttcact aacagctggg tgttccccta ttttcataca
     1021 atttctaaaa acagtctagg ttaatttttt tcctaaacca tgttaaactt tttttaattc
     1081 atacgtgt
//
LOCUS       KCLA01003313            1025 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54021upu ultra-conserved element locus uce-7807,
            sequence.
ACCESSION   KCLA01003313
VERSION     KCLA01003313.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1025)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1025)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1025
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54021upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1025
                     /note="ultra-conserved element locus uce-7807"
BASE COUNT          342 a          226 c          203 g          254 t
ORIGIN      
        1 tttaaataca tttaaaatga gggtttgagg gagtatttcc tgctctgcat gcctagcttt
       61 taatttccac attgtgtccc catggccacg ttttgctgat gacagagtct gactgcaaat
      121 cccatacctg ctaaacacta cgttttctca gtatctggtg ctgtgatatt aaataactat
      181 aaaactagaa agccaaaata actaaatcac ctggcagcca atttctgcga gttaaaccac
      241 aaacccggaa aatggtggag tgtgttgaaa taatgtaaag gaaacccata aattcaaact
      301 ttatgttctg taaagaacaa atatgaaaaa ggcatcaaaa taatgaaaga ttgtttatgt
      361 attctggcat gaaatgggaa tgtgttatga gagagagtgc aatggcagag acagatcgac
      421 agagctgaca gtgtggtatt catcctgcat ggtacagcag acgtcctgct agtggcagtc
      481 gacagcgcaa taaatcaagg gctctcgatg ctgtacctac agcttattac atccaagatg
      541 acaaataaat aataattcct gtcacagcgg ccctttgctc aaggattgag cctgaaacct
      601 tttgctcatc actcctgctc ttaagtgaaa atactagaac aagggaattg aaggccatgg
      661 tatactgagc tcatgaaaca caaagcaagc tggccacaag aactggaacc aagcaggaaa
      721 ggtcaagtag cgagaaagga taaatattta aataatctca gcaaaaagat ggcaacattt
      781 cagagctgtg aaactgcaag agacctctaa aaaaacccca gcatcaaatt aaggccccaa
      841 atagttgaga ctggtagtac tgacttcgtt tctcttctgc actacacagt ggggcgctta
      901 cctccatgct catttgcttc ccccattacc actgagtagg acagctgaac catcaaggta
      961 ggttgtcatg caggaaaacc actaccccct tcctccacat tccccaccaa aacccaatac
     1021 caaac
//
LOCUS       KCLA01003314             873 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54052upu ultra-conserved element locus uce-4236,
            sequence.
ACCESSION   KCLA01003314
VERSION     KCLA01003314.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 873)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..873
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54052upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>873
                     /note="ultra-conserved element locus uce-4236"
BASE COUNT          214 a          177 c          183 g          299 t
ORIGIN      
        1 ctggtgacca taacgattat ttggtgtaat gtaaggatta gaattctttt gaagtgcatc
       61 atttgtatct gagattgttg cttttggtgt cccacctgtc gagtctggag aacttggaag
      121 ttcaagctcc agtgatgctt tctttctagt agctgggata atttttgctg ctacaggtgt
      181 aacaggttcc ttcagaggca ctttttggta gtgttttgtt ttgatcatat gaacactcaa
      241 atcctgaaga gattcgaatg aatgaccaca gtacatacac tttaatactt tctgagcatc
      301 ttctttccct tccatttcaa gcaaagaacg tttacgaggt ttggaccatc ttttggggtt
      361 gttgttatca gtttcatggt tgtcatctcg ataatgtccc gtttcattca tgtgcactgt
      421 taattctact aaagtatcat aggcagcact gcagtcttta cagcggaatt tactggctcc
      481 agtaaatata gagccataaa gcttactgct ctgtctgtac aattgaactg tgctaaaaag
      541 acttggttca ggaagaattc tgctctgaga aacctgctgc agtgttttag ccatagcagt
      601 ctggtgccag tcaaagctgc cacttccaca actgctactg ctgctgctgc tactgctgct
      661 gctaccattg tttttctctg aaattggctg gtgaaggttc aaattgagat tggaccagta
      721 agaattggaa aggaagttat tatatacagc tttcatttgt tctaagctat cagatacagt
      781 agagtcttcc agtggtatcg aaacctcctt gctctcttcc tcatttttaa tagagctgct
      841 ctcgaagtct gccatgcggt cactcgtctc act
//
LOCUS       KCLA01003315             493 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54068upu ultra-conserved element locus uce-869,
            sequence.
ACCESSION   KCLA01003315
VERSION     KCLA01003315.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 493)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..493
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54068upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>493
                     /note="ultra-conserved element locus uce-869"
BASE COUNT          148 a          120 c           95 g          130 t
ORIGIN      
        1 ccccctcccc ccactttttt aagtgttagg ggggacatac gacgtatttc agctctgaac
       61 acaggaaaac ttctcaaaag atcgtcagcc ccttccccct ccctctcttc ggcaaatatg
      121 gtataattta cagagcaact taataatccg aggggcaccg cgaaagccct ttgcgttgta
      181 aaccgcttct aattacctgc cagagcaatt agctgactat cacgaagaaa ttagatcgct
      241 caatgtagca taaataatgc gaataatttt gtaaggataa tggaaagcga gacctggtgt
      301 ttctttataa ggaaataaca cctcgtactg tacgaaccct acatgaacac atattaatgt
      361 ctaggcatgc acggaaatga atccgaacat gaaccctctg gcttagattc agcactttct
      421 tcatttacat acgcggggtg aaagtcggct tccaggcgtt tagatacaga gctcttccag
      481 atcacagtaa tta
//
LOCUS       KCLA01003316             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54084upu ultra-conserved element locus uce-2839,
            sequence.
ACCESSION   KCLA01003316
VERSION     KCLA01003316.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54084upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-2839"
BASE COUNT          119 a           54 c           59 g           95 t
ORIGIN      
        1 gagggaggga gagagagata tgactttcct tgaatgatct gtttaaccta agccagagga
       61 aaaaaaaaga agtcattaat tacttatgtg agctattgct tctgaaagac aataaacctg
      121 cctggtcgcc atggatatga catatttgct ctgaaaacaa cacaataatt agcaaagggg
      181 aaagatacaa ggagaatatg caaactcctg agtttaaagc catagtgttt ccttttttcc
      241 ccttcctctt tttacttgtc agagtcaatt ctgtttgcaa ttcaaatcaa acaaataaag
      301 agaatattta ccaaaataat tgtaaat
//
LOCUS       KCLA01003317             676 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54099upu ultra-conserved element locus uce-1652,
            sequence.
ACCESSION   KCLA01003317
VERSION     KCLA01003317.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 676)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..676
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54099upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>676
                     /note="ultra-conserved element locus uce-1652"
BASE COUNT          218 a          111 c          131 g          216 t
ORIGIN      
        1 agcctattct cttctttgcg gactgcctgg gaaaatgtat ttggggaaaa gaaattaatc
       61 cccaaaataa ttatgttgga gcactgctgc attcaaaata cgaacttgtt gcttttggaa
      121 aagggaaaaa attagcaccg ttttgtagga cagtcgagtt aaatgaagga gggtgattct
      181 tttatttctg ctctatagaa tgatgtgcgc taatcagcag gcaatgccct gtcagtgagc
      241 taattcaact ccctgctaaa agaagtgtag attaatggat aaaggaggtc tgtggtaggg
      301 tcacactgat atggattcaa cgtgtacagc agcttgtcag atgcctgctt ggattaaatc
      361 taacctttct tgttgaaggt tgccatttac cctattcttt agtgcctcaa tttattttcc
      421 tctcagaatt tccacataaa aaaattatca tttatttgct tttcagagca aatttagaga
      481 accagttcca ttatgtgtaa gaaacctgga ggcattaaat acggaaaaac acaaggaata
      541 tttaaggaac atcatgcctg atttattcta attctcaatg agaaagcgac ttaattttac
      601 aaagaaaagg ccaaaattat tatgtaaaat tatttcagtt taaggaaact ttgaacaaag
      661 gttctacttc ttttag
//
LOCUS       KCLA01003318             562 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54114upu ultra-conserved element locus uce-292,
            sequence.
ACCESSION   KCLA01003318
VERSION     KCLA01003318.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 562)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..562
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54114upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>562
                     /note="ultra-conserved element locus uce-292"
BASE COUNT          197 a           78 c          130 g          157 t
ORIGIN      
        1 ataaatctca tacattcgaa gtggtacaca aaaagactgg gataaaattg atcagatttc
       61 ttgatagcac catttacaca ttctttaaag taaacattat tatgcacttt cttagaaagc
      121 gatataaata tatatataaa tacaggacgt gctaacctct gttaaccatc tgaatgtgat
      181 ggaataatct atctctactg tgcaggtagg cttgtgcatg gcggtgtggc aatataattt
      241 taaaagtttg ttacagatgt gatgggaagc tggaaggagt cgaataagca gaaaaaagag
      301 cttagatcta ctgtaagcaa tgagtcggaa tgagccgtta aaggttagaa tttatctttg
      361 tttctgatca ttcaatgaga aaaatgactt ccacagaaat agatacctta aaactgtttg
      421 ggggaagggt ggcaagggtg aaataggatt gaaagtccta caggtaatag cgataactgg
      481 aagtgcagac gaaattggtc ttcagagcaa agaggaacgc agccgtttaa aaagtctaag
      541 tgcaatgttg tggtgctgaa ag
//
LOCUS       KCLA01003319             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54130upu ultra-conserved element locus uce-2878,
            sequence.
ACCESSION   KCLA01003319
VERSION     KCLA01003319.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54130upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-2878"
BASE COUNT          252 a          153 c          227 g          253 t
ORIGIN      
        1 aaggggaaga tgaaatctac gataagtctg cggcacaggg cgtctacgcc tcagagtatg
       61 cagaggaagg acattatgaa ggcaatgatc ctgagctgac agaagaccaa atagaatacg
      121 gggatgagcc tggagaagaa gatgaagtgc tagaccttga aatcaatgaa cccttagatg
      181 aatttccagt gagtctcttc ctattgtatc ttctaagata atgttgcttc gctgcatagg
      241 gttttagact gatgtgaaat ctgtttacct ccctggggag gaggggaaat tagacctatt
      301 atcactgtct gccagtttct ttatctaggc cttgacaaag tttgtgttga cagcttgttt
      361 ggcggtaggt aatgctcctt tgtcatgctg gaaggcggtt aagaatggtg accttgagga
      421 ttgtatcctt aaggaagaaa acagctttgt gtggtggaga tacactgcca attgttagaa
      481 gtacttaatg caaaagcttt tatcctggct ttagacaaga tctgataaag tccttcgaag
      541 gtgaaaagat tattgacctg ctaaagacat ctttaaggtg ctaatatccc aaagtgattg
      601 atgtcctgct cgctcatcct ttttgtaagt gagaactgtc taaagcagaa taaagagatt
      661 ggaggtgagt tgggaaaatg tcacctgcat aattcaataa catcgaggca gtgttgagaa
      721 catgcgctgg ctttaattgc tagtggcatg atgtgattgc agctatgcca tcactagggt
      781 atggtaaaat acaaactaac ttagggaggg gttagttctc gcttcctatt catgaatggt
      841 tagggttgaa gggacctctg gacactgcca acagtgtcct tcctg
//
LOCUS       KCLA01003320             905 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54146upu ultra-conserved element locus uce-5590,
            sequence.
ACCESSION   KCLA01003320
VERSION     KCLA01003320.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 905)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..905
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54146upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>905
                     /note="ultra-conserved element locus uce-5590"
BASE COUNT          257 a          226 c          200 g          222 t
ORIGIN      
        1 aggaagaaac agagacccaa cgcattctgt aaaaaacccc gttgcccagc acttcagttg
       61 tgagtacaag ctcttggaga cgattatttc acaagccaca gttaatttaa aagtccaatg
      121 aaatctggac aaagtcaaat tccagtttta tcagccacat gcctcagagc taggacattt
      181 cttctgcgct aacagccata aaacctggcc cgccaaggga acaatgccat gtctcgagac
      241 aagaacgagt gtttgattct gctggttggc tcccagttgt ttgatcctgg aaggctcctg
      301 ggatggttta ctctttctgc gctgaatgca cctggtttcc acttctcggt gtgagtgtgg
      361 tatcagaggg aagggcgggt gctggagcct tactgtactt ctcttccttg catctctgta
      421 ggatctctaa gctcctctga tggactgggt gatggagaaa gctaaaacta tccacacttt
      481 tcaaaactgc acacggcact gcatcatcat gcccttggga agcaaaatga aaacaacaaa
      541 aacaaaaaac ggagagaaga gaaagattat aagcaggaac caggagaggc tacaggaaca
      601 agcccgaagg acgcgagagc tcaagggctg cagagaccca atttaaattc agtttcctgg
      661 tggcattgga gcaataggct tggccatgtc tcaaccccgc tcaccaacct tatcagccag
      721 agtgtaatgg ccttgtaatg actcttcttc agagaaaaaa ataggtgatc agataaatct
      781 ttacttctgt taactgctgt ttaaaattct ctctgcctct gccaggagtt atccatcatt
      841 ccctccgcag atgctcccag acacagccgt cacaaattct cctctcgcac cccagtgcca
      901 cgctt
//
LOCUS       KCLA01003321            1060 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54162upu ultra-conserved element locus uce-2950,
            sequence.
ACCESSION   KCLA01003321
VERSION     KCLA01003321.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1060)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1060)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1060
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54162upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1060
                     /note="ultra-conserved element locus uce-2950"
BASE COUNT          345 a          191 c          188 g          336 t
ORIGIN      
        1 cttgaatcgg agctttaata gtggtttaat ttatggcaga ttcctggctg atggcatttt
       61 tgctttcagg taaggtcatt tcaatacata tccctttaga gaaagccaaa acaagaatct
      121 ttttcatttt caagtagcca actattcagc tgctaaaatg taagtcacat acaaaatgta
      181 tgcatgtttg attctacact ttttttttaa gggaagatcc tttatgtgtg taaaaaagag
      241 aaaagtgaaa gaaaaaaaat gtgaataatt agatcagaga tagatgccac cttttctcag
      301 tgttgaaacc gtgagagaaa aaagtgctac catataattg acataattga tctatttttt
      361 tccccttttt gctgcagtaa ttttttatgc attccattgt tgctgttatt atccacgatg
      421 tgatcttgtg tggttgataa tactgactag atatgaatac tggtaagtac cagccaatca
      481 caaatctata gtgtctattt ctgcatcacc aggtgctatc tcatgggaaa tatcctcttt
      541 tttggcaggc acacagcgct ctgcattatc tgtcattttc attagattca agctacagct
      601 gagccaaaaa gacttagttc tagcatatgt gctcaaaatg gccaagatga gattgtccaa
      661 attcaccctt gcaggattgt atcagaaaac aactggagct aaagctaaaa attagagctc
      721 gcaaagtgta tgaattacat ttgggaaact gcaagcaccg taagctcaga agatttccag
      781 cttatcacag tcatcacctc caaaagctcc aaggagccta agtcagcaat ttctttggtt
      841 ttcaacactc cttttatata gactaaatgc aatgatgtca acaaagaaga acaaggacat
      901 cacaagaaga caaaatcctt ctgttttcca gtggcttaga aaactacagc aagaagccac
      961 tgattacatg caaatgccat atttaatagg tcaatgctat tatattctga gtcagcacta
     1021 atatattagt tgggactgtt gtttattaat aattctgtag
//
LOCUS       KCLA01003322            1155 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54178upu ultra-conserved element locus uce-464,
            sequence.
ACCESSION   KCLA01003322
VERSION     KCLA01003322.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1155)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1155)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1155
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54178upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1155
                     /note="ultra-conserved element locus uce-464"
BASE COUNT          363 a          242 c          218 g          332 t
ORIGIN      
        1 gcctatagct acagctaaaa cacaaactac agagcaaata aacggtaaat actgatccaa
       61 attcaaacca cagcatcatt tttgcacatc ttacttagca gcacattaaa tgaagggatg
      121 cctgatatgt aacccctgat ttggagggct cgctcacact gcagggctgt gtaattaagc
      181 tgacagccca caatttctca cacagcagac agaagtccaa gactgaaaga gcatgagcac
      241 tgaattactt tcaaagaaag aaacaggttt ttcttaatgc aatcttgaac actgttatta
      301 aaaaaaagag agcaacattt tggagtaacg agcagagatt actcattccc ttgttttaca
      361 caagttgact tttggctttc tgcagaacac catttaacag agcacattac caagctgcta
      421 gccacttttc acagtgatgc taaagcaggt aagagacaat aagtggaact gttgatggtt
      481 tatattactc tattatgtta atgttcacta aagtatgcca taagctctct cattacatgt
      541 gtataaacca attctctgtg gtgttattcc tgtgctaaat gctataacta cataaatctt
      601 gaattaatgg agactttata gttcctgaaa atgaagggta attgctatct gttaatgctg
      661 ttgttgctat taaaggaagt atatattttc agtaacaatg tttatggacc gtgagcctca
      721 cattgccgct actgcacagt gcacaggcag aacgttacgg ttatcagcct cactcccttt
      781 ctttccctcc tccctcacaa aaagctcagt attgttgcca cagtttcaac aaactaccct
      841 gcaattctcc taacagtcac agagtccaaa ccaatgtcct tcaataaata tatggtaaaa
      901 gaaacaggat ttgcatttcc atctctggga atgcatgatt tgctgagttt ctcgcttggt
      961 taaatggctg gacagctcac tttattagtc tgggtatctc aaacagctct tcgaaagcat
     1021 gtggtgacag aatgataggt gtgagaaagt atcatcccac ttacttcctt tgagatttca
     1081 gcagtgatgc agaagtgaaa ggctatactt ggccggagac agttctcaaa gagtagatgg
     1141 gacagacaag tcccc
//
LOCUS       KCLA01003323             671 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54194upu ultra-conserved element locus uce-7539,
            sequence.
ACCESSION   KCLA01003323
VERSION     KCLA01003323.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 671)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..671
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54194upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>671
                     /note="ultra-conserved element locus uce-7539"
BASE COUNT          146 a          165 c          174 g          186 t
ORIGIN      
        1 aaggtggagg aggtgggagc actgcacaag gctggccaag acactgctca gcagccagga
       61 ctggctacca ccacggtgcc gggtacccag gggcattggt gacggtctcc tcccccctgc
      121 cacatttctc ctctgtgcaa aaggagaaaa aaaatactcg gtgacctgct gaggctgcca
      181 agggaaagtt gaaggtctcc cattaattcc agactaaaaa tgacaaattc atcttctacg
      241 acaattaaat gaagtcagta attgatgcta attgatcttc agccgagagg gctcttactg
      301 ctttgccttg ctctggcact ttcctttctt cccagctcct ccctgcagtc ccctggacac
      361 taggacatcc ctatggccca tgcccagcct ggccagccct gggtatctct ttgggccgct
      421 tgcttcttgg agtttgcttt tctttttttt ttggtttttg tggaggcagg taccaggcct
      481 ggctgtgcta gcgacaaagg atttatagcc tacagctgtg taggtttcca cttaattttt
      541 ataagcccag cataggagcc agcggggggt aaagcacact tggattttct ctacttaaaa
      601 tattacaatg ttagcacttt tgcttgagcc ctgaaagggg gcggtggggg ggctggatgt
      661 gtgtgtgttt t
//
LOCUS       KCLA01003324             578 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54210upu ultra-conserved element locus uce-904,
            sequence.
ACCESSION   KCLA01003324
VERSION     KCLA01003324.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 578)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..578
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54210upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>578
                     /note="ultra-conserved element locus uce-904"
BASE COUNT          193 a           86 c          127 g          172 t
ORIGIN      
        1 cataatgttc aaacagaggg gaaaaaaatt aaaaatgcaa taataaagtt aaatgtaact
       61 gttttaaagt ataattcttt ggagagctca gttttatgtt gggccggcat ttgaagtagc
      121 actagtcatt attaacggga agcacagata gaggagattt aaatcactga agtaataaaa
      181 tctgaacgag ggctagcacc ttgaaaggct cttggagaga agattgcata caaatgcaat
      241 taaaacgatg cttataaaat actaagatgt taattgggtt tagtcccaga agccccagca
      301 gtacagtatg tcagaagtta gctggtttga agtttaaaaa gagtggttta atttgtacac
      361 cttgtcctaa ttacgaagct ttctgcagcc tgtgtatcgg catggtttat tgtagcttag
      421 agctttgtaa aacaaacaca caccagttaa ttgggttatt gcaatggaaa attgggctgc
      481 agaactgaaa ccttccttgc tagtgttttt ttacagcttg taatgaacgc tccagcaatg
      541 tcaggataga ctgatttgta aggtgtgcag tttacaac
//
LOCUS       KCLA01003325             708 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54226upu ultra-conserved element locus uce-2680,
            sequence.
ACCESSION   KCLA01003325
VERSION     KCLA01003325.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 708)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..708
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54226upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>708
                     /note="ultra-conserved element locus uce-2680"
BASE COUNT          199 a          111 c          156 g          242 t
ORIGIN      
        1 gcagatttta actcattttt aggcacttcc ttctggtgca ttataacgtg gctacttgca
       61 agagaaggca gtgaagattt tttcctgtat tctttgcttt tccttttcaa aagttaagga
      121 cttaagagaa atgtgttcag tcagctgata cagtgtttga atgtatgtat gcgtcttgcc
      181 tgcttactta tcttttatga tcactactta aagctatgat ttctttattg agggagggtt
      241 gttgctttgg gggggacctt tctggggttt gctttgattt tgtggtgttg ttaacaatag
      301 cagcggaagt tttactggca gtgattatga ctactaagca attcagttta ttggaagatg
      361 aattctactg gatcatattg gacttttcct agtccctgag accctaactt gtgaggattt
      421 ttagcaacaa tcacaagtca ggctcttggg acctaggcgg aggggaacca gcagctttgg
      481 actgggattg tttctctgca gaatttagag aaccaaaagg gctttccttg tctggaaggg
      541 gacaaaggag aatatactta ttttcaagca gcagaattgt cctaaaacaa atactgtatc
      601 cattgtgcaa aattaggatg ttacctattt gtatgtttag aaaacaggac taaatgttat
      661 ttaaaattaa gaatcaaagt ttaacctgaa aatttgcaca tcaaaaaa
//
LOCUS       KCLA01003326             984 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54241upu ultra-conserved element locus uce-496,
            sequence.
ACCESSION   KCLA01003326
VERSION     KCLA01003326.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 984)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..984
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54241upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>984
                     /note="ultra-conserved element locus uce-496"
BASE COUNT          274 a          209 c          206 g          295 t
ORIGIN      
        1 tgagggctgg atttgctgat cctggtggtc cttccagcca tgaggattcc atgattctat
       61 gactacattc cctcagttct gtgatttttg gggcgacact caaatcaagg acaggcgcat
      121 aaggctgaaa caaattcctt tatctcctac ctccttccta agcaactgca caagggggct
      181 gtggcagctg ctttcccgac acaccccatc gctccggtag gatcttgttc ccgagcctcc
      241 cgcaaaccct ttattttcag tgtttttaga aggaatccag ccggacgata aaagagcgct
      301 aaagatttta cttttaataa gaacagtgtg tccttaaaac ggcatattta gctagcagaa
      361 tgttaactgc aaggtaagag tgttgtttta taccctcagt aaccagacca attatctgcg
      421 aagttttttc atatttaatg tatccccagt ctcctttcac catctgccct tccccctcta
      481 acattgtgga atttttatga gataggacaa aaatgggcat ttcccttatt accatctcac
      541 tgtggaaatc aaatatgcaa ggaaagtagt gtatatacta attagtgctg aattcataat
      601 tactgtgctc attgatggag atacatttga atacattcaa ctcctcgggg agcggagcag
      661 gctgtccaga atagtttgaa aaaatgccct cagcctcttt tcttcttgaa attagggatc
      721 tgtggcatac agtaatgtta taagaagaag atccaaagtg cccgcaattt ctttaaatat
      781 aattaatcaa gtgaagcatg taacctaatg aatgtatttg atataagcta ctgttcaaat
      841 atgggcttta tctctgtctg tgttggaatt actaaaagga gaggacagag gatcaggcgt
      901 tgctgtttca aatgttactc ggtgtttcgc gccgcgtgtc aacggtgcgc gggcttgtca
      961 aattaaaagc tgacagaaag ccgc
//
LOCUS       KCLA01003327             762 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54257upu ultra-conserved element locus uce-4067,
            sequence.
ACCESSION   KCLA01003327
VERSION     KCLA01003327.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 762)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..762
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54257upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>762
                     /note="ultra-conserved element locus uce-4067"
BASE COUNT          248 a          145 c          151 g          218 t
ORIGIN      
        1 tgatgacatt taaggctgac tagaaagtgt tctcttccta attcctttgt aaatgcagtt
       61 cttgtgcagt tcatacagga atccaattag catctcattg tgactgatta aatatgcctc
      121 acgcaaattt acatgtcaaa atacatactg tacttaaaca aacagacaag gagccagtct
      181 tctgtaaaca gctttgcatg cataagctaa ctcaggaaca caaaagcttg tatttaaatc
      241 ctcaatgact acctgaatag agtgaaaggg agacagaaag gtaatgttac tcatgcatga
      301 agtgagagaa tgaatataga catttgtctc tctttgtctc tgaagaaaac tattgacaag
      361 agattcccca tctgcatatg aggctgtcac gtcagattag ctcatcaggt aatggaaatt
      421 tggcctctga tccagaaaag gtccctatgc actaagaatc gagactgttt caaagagatt
      481 gtattatctt agacagcagg attaaattaa tatgggaatg acttctacgg gaggaaattt
      541 tttgttaaac atgtgctaat gtttattatg cagagcatcc acttctcaga agtgatcttt
      601 cttgacattt attcattaca ttttgacctt cctcgctgct gaaaaacaaa caagtgaagt
      661 gcaccccacg cgaagcgtgg atgatgtggt gccaaccaaa agacctaaag atgcgttcat
      721 gctagcgcgc agcaggaaac agtggaataa ataccctgtt gt
//
LOCUS       KCLA01003328             969 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54272upu ultra-conserved element locus uce-5005,
            sequence.
ACCESSION   KCLA01003328
VERSION     KCLA01003328.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 969)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..969
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54272upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>969
                     /note="ultra-conserved element locus uce-5005"
BASE COUNT          318 a          179 c          172 g          300 t
ORIGIN      
        1 tgaatatgtg tggcaaacac atgctgggct gaaccttgac tccctctaaa aatctggggc
       61 attttattgt attagtgctg tgactgggaa gacaaggaat caaattgccc tttggaagca
      121 gcagtgataa ttaatataaa ttcacttttg ccttaaacac agtagtagac tctaaaaatt
      181 cattctctct tgcaatatcc ttttgtttgc ttttttttaa ttgataaaaa agaagtccct
      241 cctctatatg aagaggaatt aagtgtatgt tatagcccaa gacatgtctt cagcctgttg
      301 gttttgtaaa taaagctgat gatttccaca gctattccat ggcaaccgta gaaagggaaa
      361 acaggaaata taatgcagaa accctgcctc agtgaaaaat actgtaaatt gaatttgaca
      421 gcatttgatg gcatttgatt attctagtca cagccaaaca atgatataaa gagtaatatg
      481 aaacagaatg tgttactgcc tagcagactc aaaagcaata aaccttcctc caatgtgaca
      541 caatcacttc acaatcataa ttgtagcctg tttgatacct ctgagtacag cagaagggca
      601 ctgactgaca tagatacatt ttgtttttta tttaaagtga aatgaaaatg gcgcgctggg
      661 gctccagata caatcgttat attcacctac ataggcatga atcacttggc agttatttca
      721 gctgaagttt aaatgtgctt agacaacaac aatatcaaat ctttctcaga tagctgcaaa
      781 aaaatcagaa atgggatgta agcacatagt tctttttcat tttgtagcca cacataacct
      841 tacattgttg cagcagaaag actgcagtat ttctatggga ggttatggca tgtaatttct
      901 tcttcatcat gtgcctcttc cttactgcat caccaaaata aattaattta cctcaaaacc
      961 tggaatgtt
//
LOCUS       KCLA01003329             364 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54288upu ultra-conserved element locus uce-3167,
            sequence.
ACCESSION   KCLA01003329
VERSION     KCLA01003329.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 364)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..364
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54288upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>364
                     /note="ultra-conserved element locus uce-3167"
BASE COUNT           93 a           78 c           79 g          114 t
ORIGIN      
        1 cctttctcct tttgttgcta atcttactgc aaaaatgtct gtgttgcttt ttctcccttg
       61 cctgtaaaat cgaagttgga caaacactgc acggctgaag tgacatattt gaatggaatt
      121 cagaccaacc agttcctgtt tatgtttctg atttgagaat ggagccttct cattcactat
      181 acattagaaa cacaccaagg ccataaatgg tgtcgggttg cagcaggcag ggccaaggaa
      241 cattaatcat tactttaagg caactggcaa aagcagcagc tgagggaaca ctacaccctt
      301 cagctctgca taaatggaca ttccagggtt tggcgtgtgt gggttggttg tttttttttc
      361 ctct
//
LOCUS       KCLA01003330             644 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54303upu ultra-conserved element locus uce-4559,
            sequence.
ACCESSION   KCLA01003330
VERSION     KCLA01003330.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 644)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..644
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54303upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>644
                     /note="ultra-conserved element locus uce-4559"
BASE COUNT          166 a          156 c          121 g          201 t
ORIGIN      
        1 tcgctatggg gtgtgatccc tacaccgggc tgtttcttct aattatattc ctctatttga
       61 tatttttttt taatgaacaa atttacatca atcacttgct aaagcatcct cacactaaag
      121 ggtaggagtt cagccccaaa gatttgcatg cggcatcctc agacgaaggc aggcgctttc
      181 catttctatc gagagccttg ctgcgccgca actctaatgg gcttagaaca gtaaattttg
      241 aagaaactga ttgctgcccc cgtagctagt aaatgcctgc ctggacccag tggcatttga
      301 aaaaagtgtt ttatcataaa attatcccag cagagtccat tctgcaagat aacatcatca
      361 tcatcatcat catcagtact ccatgcagga cccaacagct ctggcacaat attgccagtc
      421 atttatctgt tgtcagcaca ggttacacac tgtaatcctt gactgcctcg gaattagaat
      481 gtctttgatg tccccacaag agttttttgc ccgaaggctt taccaatgct cggcggctca
      541 gtgtttattc ctcgtaatct tcctctcatc tccaggctag cagtgacaga tggttatggg
      601 cacacaatag tattaagagt ttgatatttt ttttcctcct cttt
//
LOCUS       KCLA01003331             842 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54333upu ultra-conserved element locus uce-3441,
            sequence.
ACCESSION   KCLA01003331
VERSION     KCLA01003331.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 842)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..842
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54333upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>842
                     /note="ultra-conserved element locus uce-3441"
BASE COUNT          265 a          211 c          184 g          182 t
ORIGIN      
        1 agaatggaat cctctgcatg aagatgcagg tgctgaaggg gtcacaaaga tcaggctttg
       61 gacaaagaga aatgtactcc tgagtcagag acagctgttt ctagcaacac cggcagcaga
      121 aaaagtgtcc ttacatccac ctccaccgct cagtacacag cacaaaagcc atcgagaaca
      181 gcagcctacc tgagagcgat cggcacctac agcagcagcc aaacaaaaag ctgtttggag
      241 gctttaaggc agggatctaa tacaaaaacg tagacaagtt gatagttcgg taccatgaac
      301 acctagttaa aaaaagttgt tccccctcct gaaacacccc aatcagtact tttggtacac
      361 atacctcgaa gaattctctc ctcatggcaa cgtagaaagt cccagattct aacagtgccg
      421 tcgtcagagc atgtagcaaa tttattatcc gtgggtgaga aactgttaca tgaagacaca
      481 cagcagggga aagaagtcag catttcacag attatctatg cttctcagac agggcaaaat
      541 tatactgtaa cgtgttacac accaaaggat gcatttgacc ataggggctt agtgaataca
      601 gcgcctgccg catgacactt gaccacaatg aatttagcac gggacctcta ctgcattgca
      661 gttcccttcc tgcctacgac tgcacagggt agcgccttct ctgcagggcg agaagcgaca
      721 ccactacggt ctggtcacta tcccttagac tttcatgttt gtcagtacca caagaaagcg
      781 acactgtgta gaagcacaga agaacagttc ttagaaaaaa aaccctcttc agccacaggt
      841 gc
//
LOCUS       KCLA01003332            1017 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54348upu ultra-conserved element locus uce-3905,
            sequence.
ACCESSION   KCLA01003332
VERSION     KCLA01003332.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1017)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1017
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54348upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1017
                     /note="ultra-conserved element locus uce-3905"
BASE COUNT          318 a          194 c          198 g          307 t
ORIGIN      
        1 atcatactct gagatgcctg aggcttagca gctacctttg cacgctggtg atatattagt
       61 gagctagcaa agatgatgaa ataaactaaa taggtaaatt cacgtttagc attctcactt
      121 tagaagctct ctgaggtact tttcctgtgt tttcccatgc actgcagcac tgatttcatc
      181 caactcatca tacatcagga acaatttagt atcatttcat ttaaagcgcg taagctttat
      241 gttgagagta aatgtgtagc cacgaggtaa aattaatcaa aactatgagt ctcatcattg
      301 aaaaaagctt ttaaagtttc cattatgtca ggtagcaaat atcttctcaa tgtaactcca
      361 gacattaaat ctgtcaagag gcatgcagta aaataaatgt ctgggatacc ttcataaaca
      421 aaaatcttat ttccataatt catacagctg gctggcattt attggcacgt caggtgcaat
      481 ggggacattt caggaacatt aacatgtaca gcatcatttg tcaacaaagc aacaatgtaa
      541 gcaaatcgtt cagaactcat acagatttac agctttctct gccagctgct aattacggtg
      601 tgctctgcct atttggtatg gtctctttta ttggaaaatg acaaaggggt tatggtatcc
      661 cggtttggaa tatagatgcg cttttagtaa taatatgagc ggtaatatga ctacacagcc
      721 tggagttttg atctagttgc actagtctta taattgaccg gctttgatta atgaaggaca
      781 aagaggaatt cgctgcgtta tttacttact gatagaagta acctccacaa acaaagaaat
      841 aataaaatat cagggagcaa aaagaagtgt ctttgctgta ggattgtccc cccttactga
      901 acacgacagg gaaaatgcaa tcctcgctga aatcctgctc tgtttattga gcaatgctta
      961 gcaagcccta tcggttacaa actggctggt accctttgaa cgttgcggaa tctactg
//
LOCUS       KCLA01003333             878 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54364upu ultra-conserved element locus uce-4355,
            sequence.
ACCESSION   KCLA01003333
VERSION     KCLA01003333.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 878)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..878
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54364upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>878
                     /note="ultra-conserved element locus uce-4355"
BASE COUNT          242 a          145 c          186 g          305 t
ORIGIN      
        1 gagtactaat attttgatgc atgtgtttca ccttattttg attaaatctt ttccagtttt
       61 gcaaacacta tactgcaaca tgaataataa gattttatct gtaaacacaa agcccttcat
      121 ctaatatttg ttgctgttgc caatttttca atgaaatgac ctaaacccca taacatatac
      181 agtagttgca ttatggggag gggggtgcta tctgttcttg ctttataacg ggggtgatgc
      241 ttgcagcttt agaggtgggt tggtgctcaa aggagcacaa gtttgggatc tttttaaatg
      301 aactgaagag aaattactag ctactagact ggcagcacgc tgtaaaatta ttactgtatt
      361 gtgtactggc tataagatgt agaatctttc ggtaagccaa tcatctgtaa tcatcctagc
      421 agtgtaatat taggttgtta aggctgctgt gttttaaagg gcatttttat ttgggttttg
      481 gtgaaatact ttaatttgtt gattatattc atatggaaac agcattcatt gataatagct
      541 ctaattacat atgtatgaaa acaacaaaca ctggatgatc tagttgatta tttaagcata
      601 aaataaattg tgttaaaact cttggataac ttgtatttgg cagtgttctt ggacgtggct
      661 ggcagccacc ccggtctatc ggctgttctt ccacatgctt tcttctgtcc agtccacctc
      721 cagtattaca ggtgatggac cattgttgcc taaatatgtg ggggacagaa gcagtgccca
      781 ctcactgctc tgggctgcag atttctgctt gggtgcaata aatacatttt gttattcagg
      841 gtttagtttt acttggcttt caaggcaatg tgaagaga
//
LOCUS       KCLA01003334             576 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54393upu ultra-conserved element locus uce-4967,
            sequence.
ACCESSION   KCLA01003334
VERSION     KCLA01003334.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 576)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..576
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54393upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>576
                     /note="ultra-conserved element locus uce-4967"
BASE COUNT          185 a          127 c          101 g          163 t
ORIGIN      
        1 atgatttatg gaatatagct ccattctgca tagactatta ctgctgctct agctgaacag
       61 gcatgataat aagttaccaa agttttcatt ccatacaata ctcctacaga tagcatttca
      121 gggcaaaaag atttcataca agtttcaccg cttggattgc agggtggaag acttcatgct
      181 gaaaaccaca catattttgc ttttatagat taagacacat tctaaggcag tcataccttc
      241 ctcctactgc gtcgtcttgt gactgagccc cagcagtgtt cctctgtgaa cgtcgcagtg
      301 acccccctgg attgttatta ggccggttgg acattggcac ctctctcctg aagggacata
      361 ccctttctag acactatcat tcactgaaaa acaagagaca catagttgta aaacaaatag
      421 catgaagact aacatttgcc tcttgaggca tgattgaaca attctattgt ttaaacaaaa
      481 acttcagaca aaatcctttg aagaatctgt agttaaaagg cacacaaaac aagaacattc
      541 tctaggatgc tacatcctta acaaagagta actagt
//
LOCUS       KCLA01003335             426 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54423upu ultra-conserved element locus uce-5910,
            sequence.
ACCESSION   KCLA01003335
VERSION     KCLA01003335.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 426)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..426
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54423upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>426
                     /note="ultra-conserved element locus uce-5910"
BASE COUNT          131 a           87 c           59 g          149 t
ORIGIN      
        1 attataacag aaatcatctg ttacattctt gtataaagca aaactaggtt tgtaagccct
       61 tgcccttaat ctttccttca attttcttcc atttaacaac aatctttccc caatactcta
      121 attaatgcaa atgatattca tgattagtta gtattatgct aatctgggcc ccaaatttac
      181 ctaaatctac atggtgttgt ctgagtacca gattgctttg ggtttctaag caaaattaca
      241 ttagcctgcc agctgtacaa aacaccatga taaagtagaa atccaagcaa atcatcaaga
      301 ttacattagt tttgtttctt aatgaacaac tgtttgcatt agggattaca gacaaattat
      361 agttttcctc cctataccca ggcagccagg catctgttga gaagtttctt ttttttccct
      421 gactat
//
LOCUS       KCLA01003336             420 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54438upu ultra-conserved element locus uce-5882,
            sequence.
ACCESSION   KCLA01003336
VERSION     KCLA01003336.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 420)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..420
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54438upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>420
                     /note="ultra-conserved element locus uce-5882"
BASE COUNT           84 a          101 c          121 g          114 t
ORIGIN      
        1 tatttataat tcaggagctg gcccatctat taatgagccc ttaatgagct gctggaaacg
       61 cctgaattac agtccgatta ttaaactcca gcggcccctg taatcatgcg atctgagcgg
      121 gctttaggta ggtttcctgt ctgcggctcc gcgccgggag ggggccgggt ttgttccgag
      181 gaagctttgt aataattttg acctgcaatt tatttattgg cctctgactg cagcagccgc
      241 tgcagatgct ctgctctatt atgcgtgggg gcaggtgcgc gcgtggtgag agacagctaa
      301 ttagggtttg ccgagagaga cgctgagccc gcgctccctc aacaaagccg agttcattgt
      361 taaacagcgt tttggtgtct gtctgtgtga tgtggctgaa ccgcacgggt acccacgctc
//
LOCUS       KCLA01003337             836 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54454upu ultra-conserved element locus uce-4828,
            sequence.
ACCESSION   KCLA01003337
VERSION     KCLA01003337.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 836)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..836
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54454upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>836
                     /note="ultra-conserved element locus uce-4828"
BASE COUNT          256 a          213 c          161 g          206 t
ORIGIN      
        1 cacaccacca ccccccctcc aactccctcg gtggaccagg aaggaggttt ggataattca
       61 aacatgtatc tactgcattt ataaaacaca acagacccca aagtatctta ctctaccgga
      121 gtgcaaactt acccattaat gaggaagaaa aagctttaga gctgcacagt aattcccaac
      181 taactgctga aaagttgaga gtttggaaac actctggact tatccagcct gtcagtgctt
      241 cgacactggc tgcagtgtaa ggaaggactg aaggtatgtg gtctaaacac aacaaaagcc
      301 actgccttac tgtagattaa atatgcagga agaggcccct ttgcataaac acaaacactc
      361 agcaaatgag taactggctc aaatcagacg cctgctgtgc attctacctg tcctgatctc
      421 tgacaagctg cacagcctgt ttaaggggag aggagctaca aaatcagatc aaatagtagc
      481 gctaaatgct ttgctcttgc aagagtaaat aacaacagcc ccaacaactc cacgccaagc
      541 gttcttccct cagctaagcg ttgttctggc aaggagctca atcgtgtgct ttgcctgctt
      601 tggctgagcc acccagagca gaagaaacac aaccaaacac cacctgtaaa attcatttgc
      661 aggagccaca ctgaaatcca acacattcct gggccgccct cttaacgagg attttaaatt
      721 aatagagact ttttgaactg aaagattcaa tctcaatttg cttgctctgc ccctgtttta
      781 tttaagatat ataaagatct tccccacaga gctgtttcag ctgttctcag tctttg
//
LOCUS       KCLA01003338             719 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54470upu ultra-conserved element locus uce-4676,
            sequence.
ACCESSION   KCLA01003338
VERSION     KCLA01003338.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 719)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..719
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54470upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>719
                     /note="ultra-conserved element locus uce-4676"
BASE COUNT          194 a          149 c          141 g          235 t
ORIGIN      
        1 taaaagatat ttttctgttc taatagaagg tcttttctgc tcttgcctgc tgcaagtgta
       61 acgcctggtt attttctgtt ccttttgctt ccagaatgag ctctgatgga gctgcctaat
      121 gataacaaac catcactgca gtaatattga tacctgttgt aatcactggc attctggctt
      181 ttcaattttc actatttgcc ttggatcaag tagctctgtg ctaatgcaac agaaggtcac
      241 cagatgaagg ggctgataac agacagagac tgttctactt aacatgcatg aaggattatg
      301 cttttcagtc gtcctcgagc taatctttca agttgtcctt ttttgacttt ctcagtttaa
      361 tcagtttaat ctcatcttcc ctcttttctg attacaagga ttttctgtag aaaccttgcc
      421 ttcacaataa ggaccatgta gaaatttatt cttatattga tttcaacatc tcttttcctc
      481 tatctgggct ctgatgcaaa gaggaagggt gggagccaga gggaaagcag agggtccctc
      541 tagtgcctcc cacctagcaa ttcctcacac ttgttatctg ggattctaat tactcctctc
      601 atacacatgg agtcagtaat ggcagccaga ttggaaatac tctactgtga tttaaagtta
      661 gtggagacag aaaagcaata agcatagtcg caagacaagc taaatgtggg gcatcaata
//
LOCUS       KCLA01003339             773 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54485upu ultra-conserved element locus uce-7309,
            sequence.
ACCESSION   KCLA01003339
VERSION     KCLA01003339.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 773)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..773
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54485upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>773
                     /note="ultra-conserved element locus uce-7309"
BASE COUNT          229 a          173 c          163 g          208 t
ORIGIN      
        1 aaaaaacaaa agtggaagag aatcgctaat cactatattc ttgatcttca aactacatca
       61 acacaacctc gcgtcgctct gtgttccagt gtgctacagg ctggcattag ccagcccctt
      121 tctgaatgtt ggcaggagcg tttgctttcc caactctgtg aaattctaaa atagaatgaa
      181 aatgcagcta ccgtactttc taagctcttg gtagatattt tcacttactt tgtcattttc
      241 aggggggaaa caatggtggc atctgtgccc tggtgctaag tgctcatttg catgcagagg
      301 cagagagata tccgtttatt atcaatttta tgcattactt catttcatgg tgttaaaaca
      361 attacattca aagggttcag cagtccacag ccaagctatt cagggctccg gcagcatcat
      421 ataataacgt tattcaggga gagacacata catcatagtt tactgactta gaagtgaggg
      481 ggagagagag agagagagag agaagcaact cctatagagc tgattacgga atttgtacaa
      541 catcagagat actacaacca gcagagaaac tccaggcagg cagagatgaa aattaacttc
      601 tgatttaatc tgcaagcaag ttgggaaaat gtttttgcct gatggctcta ccaaattctc
      661 tgccttctgt cctcccagtg tcttttatac agcattcctc accacccata ctgcagagcc
      721 ccacttgagc tgaaaagcag aggctgcccc tcccctagag gatctcagaa cgc
//
LOCUS       KCLA01003340             794 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54501upu ultra-conserved element locus uce-3443,
            sequence.
ACCESSION   KCLA01003340
VERSION     KCLA01003340.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 794)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..794
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54501upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>794
                     /note="ultra-conserved element locus uce-3443"
BASE COUNT          239 a          146 c          136 g          273 t
ORIGIN      
        1 ctgtctttct ttgctaaccc atcttcagga ttccagagtg tcctgttgcc tttttcctgt
       61 cttacactgg gtcagcacct aaaattctaa gagggatctt aaggatggaa taaaattgcc
      121 ttctgaaatg actagaaggt atagcatcaa ctaggagctc catttgtttt tcctttacac
      181 tggttaaaaa aaggagagaa ggtctgtttc aaatcctatt tgtcccttat ctctgtttgt
      241 tcagttgttt ttaatatcac gtactgaaag aatttcaata gctgtttcac catgaagtca
      301 tttgttatcc ttcagcaggc cttgcctgca gaattgtaaa gcagccttca ctatttgcat
      361 cctccagatg gaggagcata taaacactcc cagatatttc tggtaagtat gaaaaaatat
      421 cttatttgtc ctttctgtga ataaataaga gaatgtcaaa ttttatagac taataaattt
      481 gtatgcctgc actgacattg aatctctcat ggcctgcaat gtcacagacc ctgagaaaca
      541 caattttttt tttccaaatg tatactaagt caaataggag ctcaataaaa agccagggaa
      601 tttgattgca ttgtttatgt ctgtccagta gtctaattca gttgcaattt gctatgagga
      661 aatacaattt acatttttcc caggcttatt gcataagcag tcactcacat atacatgcaa
      721 gactgtatgt caaggagaac tcaaataatg ggttaaaatg tcatttaata atatattcta
      781 atgttggctt ttat
//
LOCUS       KCLA01003341            1229 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54515upu ultra-conserved element locus uce-2004,
            sequence.
ACCESSION   KCLA01003341
VERSION     KCLA01003341.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1229)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1229)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1229
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54515upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1229
                     /note="ultra-conserved element locus uce-2004"
BASE COUNT          333 a          253 c          236 g          407 t
ORIGIN      
        1 tcttcttaaa ggcagaaaac taggggattt aaaatttccc tctgttttga gggtaaagca
       61 ctagacacag tcactctcaa aacttagtga gaatgcgttc ttatagaaaa cttgaaagca
      121 gtatcttgac agtcagctgc aggggaaaaa aaaagcccat acacagagat agtcttcact
      181 tttcacacct actcagtgtc aacacctgtt tagctgtaaa gttttgaaaa ggcaatgact
      241 tgcttggata ttgctgcaaa aatacttctt ttctacgtca ataatgtatt ttaattctat
      301 ttcatattat tcaacatcag ctatttctgg tctatatcta taatgtattg tgggtagaaa
      361 gagaatgtct gatgaatacg tactggtgag ctctagaaag gcagataatt tccttcactt
      421 aataatagtt ttctttcctc ttggctgcag actttcataa ctagcaccat gccaaacatt
      481 caaagattgg attatggcct gtcgtacttg attatttttg tcagcatgct gacccagggt
      541 gcccttttct tgtgttgttc cttctgtttc catttttcat gtcatccagc ttttcatctt
      601 gtcaatcagc ttttgacttc ctgattaaag tgtctgtcac aggagcagcc tggtctccag
      661 tcagttgttt aatttgttcc tcatggcatc caattgagtt attcatctgg cccagctgtt
      721 cccaagtgct tccagcatca ctttttcatg tgtttgggtt taacctctat atctatgtac
      781 aacagtgtga attgttccat tcattctgtt gactgcggat tgctttgcct ccgtctaatg
      841 ccttgacatt gctaagacgg ctgctactgt attctgtggc ttaaccaact gagagaaaag
      901 ccgtatttca ccctggtgtt atggtaacaa gtacaactaa acagactagt tctcaagtac
      961 tctagcaggc ccaattttta acaattagga atgtgtaatg gaaaactcag ctctcagcga
     1021 tttgaatcca cccaaaaaaa taatgttgat gatgcttggc aggaggagag aaatgttcct
     1081 ttgccaggaa tttttagcat tcactgaaat cagtttgctt cattatcatg agggatgttt
     1141 gctcagtgcc aagtctaggc ctggtataac ccagccataa ctcccagtga cttatgtggg
     1201 agttgcacaa gctcacagca gggctaaat
//
LOCUS       KCLA01003342             592 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54530upu ultra-conserved element locus uce-1035,
            sequence.
ACCESSION   KCLA01003342
VERSION     KCLA01003342.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 592)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..592
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54530upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>592
                     /note="ultra-conserved element locus uce-1035"
BASE COUNT          182 a          113 c          116 g          181 t
ORIGIN      
        1 cacatctata catgtgtatg tagtaacttg aggctgccag aactgcctgc tgaatgagtt
       61 atagaatggg aagcagatgg gccctatata tgaaacaacc actatctggc atgatgtgct
      121 gcacaatttg gctgcaaaga ttaaattgag gtattgaatg tttaatacac tatgcataac
      181 aaatatggtc agagccacaa aacagcataa attacagaat tggtattcac attgcctttc
      241 ccaggaatca atacactgcc acagctcata agagtctgtt gtttaataca cataaagaag
      301 agactaattc ttctattaaa atgagttatc tgggctattt accaaaggca gtgatttaat
      361 agtggtaaag tctatgtagt gctgttgaat gcagatgata atacttcttg tccttgtcag
      421 cctgtttcat tactcctatc agttgctgct ccagcaaggt cccctgggta cattagcagt
      481 cagcccagga agtgtgttta agtaatggac ataatgttcg catttgctag accagacttt
      541 tccctaatca tgaattattc ttccccaagg ttcaattgga acattacttt ag
//
LOCUS       KCLA01003343             807 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54545upu ultra-conserved element locus uce-1752,
            sequence.
ACCESSION   KCLA01003343
VERSION     KCLA01003343.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 807)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..807
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54545upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>807
                     /note="ultra-conserved element locus uce-1752"
BASE COUNT          243 a          147 c          175 g          242 t
ORIGIN      
        1 gggagttggg tggggagaat cattgctgtt cttgagatga acctattagc ataggttggc
       61 cacattctgg aaaactgtaa tgcaagaacc aaatacaaca atgcactgtg atgtggcacc
      121 aactccttag gaaggtagca tgcgtttttc acataaagtg aaaacaacgt gagaacatac
      181 tatggcttga cattgcaaag agaaaactcc tgactaccat tccgactgat caagagacta
      241 atagaacctc agcaggcctt gttcacgtta tgcagaaaaa aaagtgctgc agtttagata
      301 cctctggaac ttttccacag tgtcacaggt ttgtaatact tgaagcccta catttctaag
      361 aaaatatttc ttgctcagtt gtttcaggca agcccaagac tttgtaactt ttaaggggcc
      421 caagattttt tttcaataac agaccagctt cttattcctg cagttacaga tgtaatttcc
      481 tttgtcaaac ataaggtacc aaatataatg caataaaaca ttttgaaaaa cagttgtgtg
      541 aatattggaa ccaatctcta ttgtactttg caaatgaaag ggttgactag agcgcagctt
      601 agggctggct tgccatgctg tgcggttctg acaggtggct gtggagtaca aagtgcagat
      661 gcattgtatg taaatactga atgtctggga agtcctgtaa cagatggctc tgctacttgg
      721 cttttaagtt cagcagtgtt aattttgttt tccaaggtga gctactatgt taataataca
      781 ggtaagtgct caaggatttt ttctcat
//
LOCUS       KCLA01003344             935 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54560upu ultra-conserved element locus uce-5450,
            sequence.
ACCESSION   KCLA01003344
VERSION     KCLA01003344.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 935)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 935)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..935
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54560upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>935
                     /note="ultra-conserved element locus uce-5450"
BASE COUNT          220 a          236 c          271 g          208 t
ORIGIN      
        1 cctttccgag agcggcttgt taaattcccc tggccgcacg cgaggacggg catttgcagg
       61 cgggcgctcg actccagagc cgcgtcgctg ctgcacagcg atgccgagga gctggctggg
      121 gaagatgcga ttgattgtaa atacattaga gcgggggggg gctcacctgg gctcctgcag
      181 cgtccccccg cttcctatcc gcacaccccc cctccccgca cggtcgcata ttttaaggct
      241 tttaaaaact acagtaaacc agaaaatatg acctttaaga gcacggttga gttgcattca
      301 ttttataacc atcagagcaa ctctttactg gtgtaaggta gaaaaatcaa tgatgcaatc
      361 tttttccttt tgcctcgtgc aatccgtaat tgaaatggaa aatcaaatga acggctaaca
      421 gataattgtt ttatcaatat tccctgcctg ccctacaagg gtcagcccgg aatgatcatg
      481 agccacggat atgatgagga caaaatgtga aattgaacag ccaggaggca ataaatcaac
      541 cctgacaaga aagagtgacc agcatgtagc cggtgcaggc agcggtcggg acactttttg
      601 tctgcggtgt ctgcgcgcgt ttcgccctgt gagggtgtca cggttgaagc tctagcagca
      661 ggtaaacaac tgcaggctcc tcggggctta gggcaccgcc gagcaagccc gctgcagctg
      721 aggacagggg gatgcggggg cagagtgggg gaagtccccc ggtcagccag cagggcagta
      781 ggggaacacg gtggggccgc tgcacgcggg gggctcccgt ggcctcccgg ctggtgctca
      841 aagagggaag agaagtaaat acattcaaat acattttctg ggctgctctt ttgctgcgct
      901 ctgaattgtg ttcctggtat ttcgggatct ccttg
//
LOCUS       KCLA01003345             602 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54576upu ultra-conserved element locus uce-5995,
            sequence.
ACCESSION   KCLA01003345
VERSION     KCLA01003345.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 602)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..602
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54576upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>602
                     /note="ultra-conserved element locus uce-5995"
BASE COUNT          154 a          162 c          168 g          118 t
ORIGIN      
        1 agttccttaa gaggaacggc aggtacgaag acgagcaccc ctcctaccaa gaagtgaagg
       61 cgcagactgg gagctttcca gtcaaaaacc ttacgcaaag gcggccgttg tctgcgcgaa
      121 gctacagtac agagagttac ggcacctccc aaacccggcc ggtgtcagcg aggccaacta
      181 tggcagctct gctggaaaag attccgtcag actataactt gggtaactat ggcgacaagc
      241 cttccgataa cagtgatata aagacaaggc ctacccctgt gaagggaaat gagagctgtg
      301 ctaaaatgcc cgctgactgg agacaacagc tacttagaca tatagaagct agaaggttag
      361 acagggtatg tttggcattt ctctgcaatt aatgccttta gtcgtgtgtc tcgctatgtc
      421 aaaactcttt gcacgtccgc tggtaaccgc cagaattccc agtcatgaaa cccctgcctt
      481 ggcgtccgag gaaccggccc ccgaagggct ctgggggtgc tcctggagcc aggggttccc
      541 ggttaaacga gcggctgtgc gcgaggacca cgtagcgact gccgcggcgc cggccccgat
      601 aa
//
LOCUS       KCLA01003346             485 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54592upu ultra-conserved element locus uce-2345,
            sequence.
ACCESSION   KCLA01003346
VERSION     KCLA01003346.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 485)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..485
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54592upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>485
                     /note="ultra-conserved element locus uce-2345"
BASE COUNT          154 a          106 c           98 g          127 t
ORIGIN      
        1 ttaagactgt catagtccta ttatcataaa atctgtagca cacttccagt atggaggacc
       61 catctgtgtc cgccatcctt ttacacgtca ttggcaaagt agtagggaac tcgcagtggc
      121 tgcctctgcc tgaaaggaat aaaccacaag atcttccagt gagtgccaaa aacttctgag
      181 aaggtctgct gccatggctt tcggtgcctt gatctgcaga agacagcatt attagtgaaa
      241 gacagcatgc ccgtggtgca cttcagtcag caagaacaat gcaagttggc tggggaacca
      301 ttactcgact ctgattaatt atgtcccagc atcacaaaca caactcttct ttcattgcag
      361 tgagacttac ttcagagaac agaaactata gtcagtgaaa agcaagtctt aaagcaaagg
      421 agaacctcaa aatcaatggt atacgtgtca acacacaaaa aaaatagtgt tttgatttat
      481 atttt
//
LOCUS       KCLA01003347             860 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54608upu ultra-conserved element locus uce-3558,
            sequence.
ACCESSION   KCLA01003347
VERSION     KCLA01003347.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 860)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..860
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54608upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>860
                     /note="ultra-conserved element locus uce-3558"
BASE COUNT          251 a          149 c          164 g          296 t
ORIGIN      
        1 agttatagag tagcatttgt gactatgggt gtgattcatc ctccctaata taaactttct
       61 agtacagcca ctggatgtgg tcagtcatgc ctcctactat tttccattta atagagtgac
      121 ccaagatgaa cagattggct gcctgagtga tgtgaggtga aactgtgctg ataatgtggc
      181 ttgtgaatta gatctaatcg ccttgtccca tgcaaaccag tgaccagttc tcaaaactga
      241 aggtagtcag aaagttgttt ttcaccttat aaacccacat gtttagaaga ttttacagct
      301 tgtgtaggct cttcactgtc tttattaaac tgtttatctg aggcaacttc gtattttctt
      361 ttaggataaa ctggagataa tgcaatgcac ttgttttaat ttgcaagttt aactgatcta
      421 gttatatgtg tgcatttctt taaatcctgt tgaggactag gcccttgcag gtggttgctt
      481 tgttttccac catcaggaaa tctcttaaaa tgagatgata tagctcagtg ggtcttcttg
      541 tatgaaggat tttctaataa tgtatgaatt tattaaagac aaagataaat aaagggttta
      601 tttacattaa acaaactcac gaggcactag tttttcctta aactgagaag gccaaatgtc
      661 atctacattt actatattaa aggattatcc tcatactgca aagatgttag atatcagcat
      721 gttgtgacag acatttccat tcttgtgtca ggccaatttt ttagtgctca tgagttaata
      781 tttttgcaaa gcctccaaag atgaaaactt ggagatttca attgtgcaag aagccatgac
      841 actgtactaa acttctgcct
//
LOCUS       KCLA01003348             290 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54623upu ultra-conserved element locus uce-850,
            sequence.
ACCESSION   KCLA01003348
VERSION     KCLA01003348.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 290)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..290
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54623upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>290
                     /note="ultra-conserved element locus uce-850"
BASE COUNT          100 a           48 c           52 g           90 t
ORIGIN      
        1 taaatggata taaaatctct ctctcaaaac taggctgtaa ttctaaggat gccgtggaaa
       61 aaagaaaaaa aaattactag ctctagtaac agatgtgaaa ttacattaga taaatataat
      121 cattagtttc agtctcaccc tggttaattt gtttgtggaa atgtgcaacc cattattcat
      181 taggtaattt ttcacacatt gattagaaag ccatgtcgaa ttgtgaccca gcacattggg
      241 gtttgcctat ctcacactga actatatcgc ttacaatagt ggaaatgggg
//
LOCUS       KCLA01003349             327 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54639upu ultra-conserved element locus uce-2209,
            sequence.
ACCESSION   KCLA01003349
VERSION     KCLA01003349.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 327)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..327
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54639upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>327
                     /note="ultra-conserved element locus uce-2209"
BASE COUNT          120 a           44 c           64 g           99 t
ORIGIN      
        1 gcgtaaattt aaaataattt ggactgaatg atccttacta gaatagatgg ccccgagaaa
       61 aggatggaaa ataaaagcag ctttagtcag aatctaagca atttgctgcc aaatacaagc
      121 agcatttccc cagattataa tttacactgt attaactgtc aagagtactt ttgagaaata
      181 tagataacaa ttcagatgca atcgataggg agtgacagtt gattttaaag cttaatgcaa
      241 gacaagaaag aaatgactgg ggtatcagct ctggaagaat aaatttgttt tgtatttgat
      301 ttttgtgtta aatttattac tgccaag
//
LOCUS       KCLA01003350            1148 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54654upu ultra-conserved element locus uce-1290,
            sequence.
ACCESSION   KCLA01003350
VERSION     KCLA01003350.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1148)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1148)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1148
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54654upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1148
                     /note="ultra-conserved element locus uce-1290"
BASE COUNT          337 a          232 c          237 g          342 t
ORIGIN      
        1 tttaattcaa tgccctgaaa ctcagtgtat cagaaacatt ctcttgtgtg atctgcgagc
       61 tacagaggat tcagtcgacc acaggaaaac agcaggcact taaaatgtat tcacagttgc
      121 tggcacagag gttttaagta gggaaatgtt gataatttca taacgcgtgt ttttcactca
      181 atgctgagga cccactttta aattaaaaca agaattctct tatcaaagat atcgggattg
      241 cctaagtgtg aaatgtttcc aattaaagtt tcattcatgt ttagccaatt tttcaattga
      301 attaaaaaag cataaaatac atataatcta atgtaacctc tctgaagagt gaagtcttta
      361 ttctgctgaa ttcagaagag cctcatccaa tataatcgct gcattcattc caattataag
      421 agcaaagttg tgcagacttc ttatatgtta tgcaatgtca agaagcacag tgcacagcac
      481 taattcctca agtgaaagag gcagcgattt cccacagcag ctccttgatt taaattacag
      541 agcacattta ttatgcttct gttcctctga ctgtgaaata ccatagtaca gtagctttgt
      601 tctgacctct tctccaaagc cctgcctcaa agtgtgacta atctagtgct ggatgacagc
      661 taacttcaac atcagacaac acgaaaattg aagacacttt ttatcctctt gccaatctgt
      721 gagtgtctga ataagcctcg tcaacttcat tacaaactca tcatctcttg tgtagataat
      781 gatagcctag gctggtggag aactcagctt cttgttgttt ttactgactc tctctgcctc
      841 caggccaagc atctgtgggg ataatgaatg gagcaattct tttggcacaa aacaaaaggc
      901 tcttggggtg gggaaaggcc cgtggcatca gtggaggccc agctctcaca ggcgaaattt
      961 ctttgttatg aatcagttct cagaaaatag ctctgtagta accagagaag cgaaggacac
     1021 agagtaactt tgtactgtgg tgggaggtta aaggcagtgg ccatgtgaaa gaatttcaga
     1081 ggggttttat tctctttctt caggttgcgc tcgccagtgt tgccttgtgc taaatgcgac
     1141 agcggcgt
//
LOCUS       KCLA01003351             352 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54670upu ultra-conserved element locus uce-3801,
            sequence.
ACCESSION   KCLA01003351
VERSION     KCLA01003351.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 352)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..352
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54670upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>352
                     /note="ultra-conserved element locus uce-3801"
BASE COUNT           98 a           58 c           52 g          144 t
ORIGIN      
        1 atctcaaaaa taagagtgca tttttatttt agctttcgtt ttgccaatat gttttcatcc
       61 tgtattattt cgttcaaatg acttacacta ggtgcctatg ttcccatgaa tgtttccttt
      121 acctttttca gtgatcgctg tggagaagat ccaaaccaga aagtaatcca tggggttatt
      181 aactcctttg ttcatgttga acagtataag aaaaaattcc ccctaaaggt agatacttat
      241 ttctgatcta tttttaaagt tttgaatgtt attctggtat atattatttg tccttaaaaa
      301 aaccaatctt ccttttagtt ttatcaggaa atttttgagt gtccttttct ga
//
LOCUS       KCLA01003352             864 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54685upu ultra-conserved element locus uce-2001,
            sequence.
ACCESSION   KCLA01003352
VERSION     KCLA01003352.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 864)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..864
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54685upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>864
                     /note="ultra-conserved element locus uce-2001"
BASE COUNT          268 a          174 c          159 g          263 t
ORIGIN      
        1 ggctagagcc caatggaaac ccctgatctt tttttttata aaccttgaag atatttatct
       61 ttgttaaggg tattcagata cttaggaatc ttttctatgt ctcccccagg acattacagg
      121 acattttcca tgtatatctt agtgggattg ttcagcaccg tatccattcc atctacctct
      181 atcttcacct gaagggcgaa atccttaaga tcttgacaca atactgataa atacatggaa
      241 ttattaaagt tgccatctca gcagaataga atcgctgcct cctttgttct caagggaata
      301 catatttcac ccagtagcaa gacacccaag tgctgctaca atcaaaactc tctgaaatgc
      361 ctttaagcta atcatctttg aacataagcc tttgttgtta aatcagggac cttctccatg
      421 caaggcacag aaaccttttt tgtttttcct ccaccttgca caaaacagct ttaagcctgt
      481 caccgctgac agtaaggttc agtgatctgt caacattcac ccctgataaa gacagtgaga
      541 gaaatccgtg gctctggaga gttcagtaga gaccaaacag tatgtttgca aaagagcatt
      601 tttatatgtt ttctcgtgac agcacgagtt taacagaaaa tagttggagt gtgccaaaga
      661 aaaaaaaaat aaatagaaga cagaagtagt aagttaggct agcatgacat gatggatctg
      721 ggctatgaca aacagaattg gaaaaaaact tccctgggac caactatacc aggtttgctg
      781 aattgtattt cttgatttct tactgtgcaa cagtgctttt tagtgttaga ttgactaggc
      841 ttcagaatat ttttaaaatt gtac
//
LOCUS       KCLA01003353             885 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54700upu ultra-conserved element locus uce-3932,
            sequence.
ACCESSION   KCLA01003353
VERSION     KCLA01003353.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 885)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..885
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54700upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>885
                     /note="ultra-conserved element locus uce-3932"
BASE COUNT          267 a          180 c          178 g          260 t
ORIGIN      
        1 gacattacta acatgcagcc aacataatga gtcccattaa ctcccaattc agcttgcttt
       61 ttgaccacct ctcttttaat gactatactt ttcttgactg caaagtttgg ggaataggca
      121 aactgttcgc tctgctggat tttaatacat gtttacatcg tcctttgcag agcagcacca
      181 cctctcaatt aatgttactc ctagccttag aggagggctc ggtaataaat aagtaaatgc
      241 gtgtgtattg gaaaagtgag tattggaacc aggtttttag aaaggctgca gagcctttta
      301 gagactaagc agcatttgtg ttctaatatt ttaaagcttt tccattgatc tcctgttaac
      361 tgagaagcaa gaattaacct caatgacagc gctagtagct ctgcagtcta ttttggcctg
      421 ttctttaagt aaaaagagca acctagatga gaattttgtg cttcactgga tattgaaaga
      481 tgaggcaata aactgctaaa cttgagtaat cacacactcc cagaggaatg cctcaaatgg
      541 ggttggtcaa aaaccttgaa attctagcct tctgcacact gcctgggctt taacatttga
      601 tgagagtcat tatagtgggg gactgaatac aagtgtcttc tgattacaga ccttccatta
      661 aaagttccca ccagtgtgcc tttccataga gaagcgtcaa tgggattaaa atctcaattc
      721 accccagtca attctccagt aacacgattt cattagaggc aggcagggag gaaaatggac
      781 tagaaagcac tgaaacagct ggtgtataaa ttataaagtg tactttctac taagtgaaca
      841 caccttccgc tcagccacat tactaattaa tgtgtagggt agccg
//
LOCUS       KCLA01003354             884 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54715upu ultra-conserved element locus uce-1037,
            sequence.
ACCESSION   KCLA01003354
VERSION     KCLA01003354.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 884)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..884
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54715upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>884
                     /note="ultra-conserved element locus uce-1037"
BASE COUNT          293 a          164 c          132 g          295 t
ORIGIN      
        1 aaaggaaagg aaagcagcaa gagaactata aaatagagca cctcctaagt tctctttcac
       61 cattttcccc atttgtgtat taagcaatac ggcagctgtt gaacaagcac tatcaacaaa
      121 gcaatcttct agccctttga tttaggttat tcatatctcc tgccctgaaa taaaatgact
      181 ttcacaatta aaacaccgaa atcaatgctg tatctattgt catgtctgcg ggagaaaagc
      241 tttaattaca accgtagtta gataacacaa tcattacacc tccttaatct caaatataaa
      301 accagcaccc tttgagtgct atgccaccct ttctttgatt ttttttatgt gaatggcttt
      361 ttatctgagc actttaattt gcatgccttt gctgcgaggc agctccccat gatatgttaa
      421 ttgcagagtg ctttaagtac taaaagatta acataaaact ctttgcaaac aagctaatag
      481 tttatgataa tttttgcatg gcctttgtct gtctatcact gaattgcctc tagcagtaat
      541 tttataaaga agctgtaaaa tatcatttaa acaagttcat ttacacataa ttattaccag
      601 aatcacatta ttcaatttag atactccagc ctattaacaa tccatgaact aaaatgtaat
      661 taaactgttt tctttttatg aacctattca ttacaatgtg tgggagatgg atctctcagt
      721 ttcactgaaa atttcagcaa tttgttgtgg gaattgacac gtctggcact cattctgtgc
      781 ttttaattat atttaaagta tttcaagaca gctaagataa agaatatatt tagaaaagaa
      841 tgtgtagaaa tgccaagagt gtgtcaaccc gaaacatatt tatt
//
LOCUS       KCLA01003355            1053 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54729upu ultra-conserved element locus uce-6273,
            sequence.
ACCESSION   KCLA01003355
VERSION     KCLA01003355.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 1053)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 1053)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..1053
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54729upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>1053
                     /note="ultra-conserved element locus uce-6273"
BASE COUNT          298 a          226 c          213 g          316 t
ORIGIN      
        1 ttttgcggta gatggctgcg ccaatgaggg tattgagaca gcttttgtaa agtatttaag
       61 gacatcggca acacagcaca aaagccagaa caatcttgtt tgacaactgt agacagcata
      121 ggaaggtgaa tgcttggcca agatgaaaat tgtggaaagc aaacctcaag gtaacaaata
      181 agatctaaaa taactacgtc tcaccttcta atcatgccta tactaagact gtcttagaaa
      241 cctcatcacc cacagtcatt caaacttgca ccctggcagc atctggtttg gattgaataa
      301 tgtctcccaa tcctatcttt agtcttccct ttttccttat tttagttttt actaaagaga
      361 aggtcttacc tggcctgttt ggcattgttc tctctgctct ccccctctaa tctaaagtaa
      421 tttcaaagag tgagcggcag atatcaaacc caatatcctt tttctcatta gcacttttcc
      481 cgtgcagacc ttcaaatgcg gtaataatta atgagtctgt gtcagaaaat gaataaaaga
      541 tggctcagat gcttcactgt tcagggctga cctttagctg agtctactgt attaatatat
      601 tcttgtgttg tcagactcaa agagctaact gccttatgaa ttatttatca acacaaaaag
      661 tcttaaccag aaacagtgtt aacattaatt tctaaccctc tgtgtcacag caaagcctgc
      721 ctgcactgca taattgaatt ttagttttag acaagcaatc aaagcacaag tcgctgttgt
      781 tgtaagtgtg gctgcctatg atagcgggag gaacggctgc tctttttgca catctggtgc
      841 attacaggca gtgcaggttt ctgtgagcaa taaggccgac tgaagacaaa tgtggaatgg
      901 gttgtcagca gtgggaagcg ccatagctcc ctcctcccca caacaatcct agatgccaaa
      961 ctgcttatta tcctgctgtt ggtatttcta atgaaggctg gtatggaagt gtgtgatgcc
     1021 ttctctgctt tcaacatgtc aaggggttcc ttg
//
LOCUS       KCLA01003356             640 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54757upu ultra-conserved element locus uce-4343,
            sequence.
ACCESSION   KCLA01003356
VERSION     KCLA01003356.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 640)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..640
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54757upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>640
                     /note="ultra-conserved element locus uce-4343"
BASE COUNT          221 a          108 c          107 g          204 t
ORIGIN      
        1 aaaaagagca cttttaaaca ctgtggaaaa tttaacacag gtgctttata gcatcagaaa
       61 attcaggagg cttctgaata aactcataat tcagaagcat ttgagagaca gcaatgcatc
      121 aatattagat gtttagtagg ttatatcttt gaaagttaga tggtatagca gacaaaataa
      181 agttgttggt gacctaatac gttgcaagtg gtttgtcacc tacagcactg cattcttcaa
      241 agatatccaa cacacacaca cacaagaaaa tatctcaagt gaatttattg actaaaacca
      301 gttccacaga accaattagt atctcacaca ggctgccctg caaggcttat gaggccatcc
      361 atcacttgtc catttaacta tttagcattt gttccagcaa tttgtcacac tgtcagaaag
      421 gtagcatttc agaataggtt ttggttgaaa gaaatctaac taagataatg caggtatttc
      481 tttttttaat aagaccagca caagatttat gtttctatta tttttaacct taagtatctt
      541 gtgtgaaagg tgaggttaat tctttgcatt tcaaagattc cacatttaaa tcaattgttt
      601 tatgtgagaa tttacaaata tcatgcaaac tggaatcatt
//
LOCUS       KCLA01003357             772 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54773upu ultra-conserved element locus uce-4285,
            sequence.
ACCESSION   KCLA01003357
VERSION     KCLA01003357.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 772)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..772
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54773upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>772
                     /note="ultra-conserved element locus uce-4285"
BASE COUNT          245 a           98 c          140 g          289 t
ORIGIN      
        1 ttattaatgg ttaaatttat taatatatat aatttattaa ttacattatt aataattatt
       61 agaagttacc taatacactg ctgtaactgc tgctgatttt gtctgaggta gctcttttgt
      121 gttcttgatg attactgtaa catttctatt aagtgaatcc attaattatg ggttcctaag
      181 atgcttctaa aatagatttt gaaatccagg caggtagaac tatatttact tagattgcag
      241 ttttaaaaac tgaagacaag atcagaaggt aaatctatac agttcttatt aggttatgtt
      301 tacagaggaa gatgtgaaat tctacctcgc agaactggcc cttgctttgg atcaccttca
      361 cagcttggga attgtataca gggacctgaa gccagaaaag taaagtaaaa tgtattttac
      421 cactattatg tgtatttgct tgttgtttta tattttcttt tgtagtaatg ttaaacattt
      481 atactacata aatcataaag cacagataat acattttaaa tgaaataaca ttggcttgtt
      541 aaatgaacta agttggagat aaagttgtga actgttttat ttttgatgtt atatgtaaac
      601 ggtgctctat gtgtgttggt gaatgtgaat tttaattttc agcattttgc ttgatgaagc
      661 aggacatatc aagttaacag gtaggtaaca cttgtgtata gcaccttctg aacgtatttc
      721 tctgtaagct ttccattgca agagaagtag aagccaatat ttagctggtt gg
//
LOCUS       KCLA01003358             689 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54789upu ultra-conserved element locus uce-7229,
            sequence.
ACCESSION   KCLA01003358
VERSION     KCLA01003358.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 689)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..689
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54789upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>689
                     /note="ultra-conserved element locus uce-7229"
BASE COUNT          217 a          134 c          121 g          217 t
ORIGIN      
        1 agcactatag cttttgtgca taacttaatt cattcttcaa gacaagtaca aaatttgtca
       61 ctgacattta gcgccagccg taggcaatgg ataaaatgaa ctagttagca atttaacctg
      121 tacagagtgg gatgaacaat tttctgccat caaagcaaat ggctaacatt tagcaagatt
      181 ttatttttat ttttcagccc atcccatcct caagaagaaa gaagtcaggc taacattttt
      241 tctgggtcct aaatcttcct ctcagcctat ttctttaatg gtttaaagaa aatgactatc
      301 cagaggataa ttaggcactg tgctgtcgca tcgtgtcagg tcacagctgg atttagtcag
      361 cattaacctt tggggagaat tggaatatca gtatcattta aaattaaaga cgtgtaagca
      421 ggcatttctg gagatgttag aaaagtaatt gtctgtaaat tgtttgacct tgagatttaa
      481 ttgcatgcac aacacacatt ctagcaagag ctctggactg tgttcagtct ctttgacctc
      541 cctacctcac tttgcagaac cctttaagct acctgtggat ttttctgtaa aatatgaaag
      601 attgttttat accaagaaca gaagctttaa gcaagacctc tgcaaacaaa accattaaaa
      661 tctctggtat agacctcacc aatttcatt
//
LOCUS       KCLA01003359             875 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54818upu ultra-conserved element locus uce-3912,
            sequence.
ACCESSION   KCLA01003359
VERSION     KCLA01003359.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 875)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..875
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54818upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>875
                     /note="ultra-conserved element locus uce-3912"
BASE COUNT          266 a          135 c          172 g          302 t
ORIGIN      
        1 tgggaactga tagaaatttt cttagtttca acaagagggt ttctaaaaac gtttgagggg
       61 aaaacatgca gaaaggaaga aatatctgag atgatgacta tttggcctta aggctttgag
      121 ataaactaca aaaagcacca aaaataaaag ttgaggttga tgtgagtttt cacttgttcc
      181 tctacacctt ctttctaact gctccactgt aataaggaag aagtgttaaa ctgagaattc
      241 tgtcttttct tggttttagt cacagtccta ctgttagtaa gacctacctt cagatagttt
      301 taaagcatct tttaccatgc ttttcactta cttttaatca acatgctctt ctgaacaacg
      361 tatagaattg atagctgtta ttgactgttt gtagcattac ctaatcttca ctaaatgtag
      421 gaagcttttc agatttagaa aggtggcaga caatggctag taataatgct gctgggaatt
      481 gaagctcaat accgtggtca gtataaaagt gataaaccta ttttattata agcccattgt
      541 tttttagtaa atgctcgagc tggtgtaatt tacaggcatt ttgaagttgc ttatgtattt
      601 ttcagctgtt tcagtatgaa cttttattaa tgacagtgtg ctggaacttt ggaaaactcc
      661 agagggcaaa gaatagagta ttgtaatcat ggagaaaagg gatggcgttg atgctttcag
      721 tagaaaggga acatataaga aatctttact aaaacagata taaacgtgac cttcactgca
      781 gttctgtaat tatcctagtc cacagtatga tgtttgtatc atgatttcct gtatttcctc
      841 tttgttttca tttttatctg ggtacttcac tggtg
//
LOCUS       KCLA01003360             647 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54833upu ultra-conserved element locus uce-445,
            sequence.
ACCESSION   KCLA01003360
VERSION     KCLA01003360.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 647)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..647
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54833upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>647
                     /note="ultra-conserved element locus uce-445"
BASE COUNT          204 a          126 c          100 g          217 t
ORIGIN      
        1 aaaaatcttc attactttgg ctactaactt ttaactgttg ccctaactac acgctcacct
       61 gcatctctct catgaaactg tgagaatcac gcaatcgctg tttttacaga gcagaagaac
      121 tgctaagctt ttgcctcatt tttgattaat ttcatgcctg actcagtcag agattaggcc
      181 ctgacacagg ttataattaa atattgaaat catgaagtgc aagaatgttt aatttttaaa
      241 atatgagttt taatttacct catacagaga atagctctgg tcacctgcag agatgcatta
      301 cacactacat tgcctaatgt aggatgcctg aataaggctg agcatacagt taaagtaaac
      361 taatgcaatt tactgaacag cagtcaaata tttatccagt tgatgaagag actttatgtg
      421 aaactcagac aataattaaa gaaaagcctc gcttaaaaca tgtttattcc agttttcaca
      481 aatactttat accaaagcag catcttcctt ttctcaaata ttgatgttct cctaacacat
      541 tatacagtga gcttgtcctt ggcattctct tgactattta atgaatacat ttcctggcat
      601 ttgccttatc tctgttatgt tgttctttgg agagctaaaa ctattag
//
LOCUS       KCLA01003361             584 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54848upu ultra-conserved element locus uce-3279,
            sequence.
ACCESSION   KCLA01003361
VERSION     KCLA01003361.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 584)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..584
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54848upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>584
                     /note="ultra-conserved element locus uce-3279"
BASE COUNT          132 a          179 c          145 g          128 t
ORIGIN      
        1 tttctggagg aaagttggtt tgtagattag cacagtgggc tcctaaaaca tcttacctgg
       61 gaaaggaggt ggcctgaaga ggatggggat gaagagacaa ttggtgaatc ctttccaaaa
      121 ctgttagctg aggggaggtt cccgagctgg ctcagtgttg aggacaccct gccagccccc
      181 caggatggcc cgcacagagc ccagagtagc taattgatgg ctctttgctt tagatgactg
      241 tctccatcag catctctgcc ctttattcac agataaatct ttccctgttt ctaggagaaa
      301 aaaaaagtgc gttcgctaca tacaaggtga aggcagctgc gtcagcccac cctcttcaga
      361 tggaagctta ctagactctc ctccgtcctc ccccaccatg ctggcctccc cctccagaga
      421 ctcgaaacca cagactgaac aaacgcaacc cctctcgctc tcattgaagc ctgacccgct
      481 ggcgcacctg gtcatgatgc cgccgccatc ctcactcgtc ctcgccgaga gcgctgcgag
      541 caagcctggt gccctgtctg ccgccagctg ccccaacggg gccc
//
LOCUS       KCLA01003362             746 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54863upu ultra-conserved element locus uce-7353,
            sequence.
ACCESSION   KCLA01003362
VERSION     KCLA01003362.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 746)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..746
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54863upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>746
                     /note="ultra-conserved element locus uce-7353"
BASE COUNT          263 a          123 c          149 g          211 t
ORIGIN      
        1 taaggtttca tgcagcccca gaaaatgtgg cgaagggaac acagaaggga tgaaggaggg
       61 aatggcaaat ttgttgtgtt taaggtattg gacaccatct gtattttatt caaatagggt
      121 tatatatttt gtgaaaataa aaaccagcct catgagtcag agtgtgcaag gcagtcactt
      181 gaatatctat aatgggaaac atgttttagg ttggaagttg caaagggaaa tcaaatgttt
      241 gaagtgtcaa agttggaaaa atataaaata tgcctgacac catagctatt aaagccaaaa
      301 tgaataaatc atcatctcag gaaagaaaac cccaccaagc tcttggctat aaccttcatt
      361 ttcctacgct caaataaaac tacatacaac ctgataattt aaccagactt gtcaataaga
      421 gttgatggct tcaacagaca ctatcacttc atgcttcagt gtcgacttca gaagcatcca
      481 gtgtattatc catgaaataa atttaatgtc aaatgtttct ctttaagttg atagatagaa
      541 gagtcttatg cagtggagct gatgtaaaat attgcagaac actagggtaa catgaaatta
      601 atgccagctc agtagtttac tccccgtgta caacttttcc tgagcagtta tgtaagtagt
      661 attttagtgt ctttctaagt agggcaagca caacttccaa ggaagaattg agaaaaaact
      721 ttgaggttac aataacagaa gcctga
//
LOCUS       KCLA01003363             781 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54879upu ultra-conserved element locus uce-239,
            sequence.
ACCESSION   KCLA01003363
VERSION     KCLA01003363.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 781)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..781
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54879upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>781
                     /note="ultra-conserved element locus uce-239"
BASE COUNT          224 a          162 c          153 g          242 t
ORIGIN      
        1 tcgaggcgag agagcaagcg ctggagattt gctatctttc aatatagctc ttaagtggta
       61 ataggataac cccttaacat gttggtagcc tatcaagctg cccctcagac ttgaccctgg
      121 ggtgaaacgg gaaagtcagc tctgttcaca gcaattcaac tcgtgtgcta ggcaataatg
      181 aagtgacctg aaataatata aaacccttgc ctgctgtttg atgatttttg tctgggataa
      241 gagtagagat cctgattcag agtcacagtt catttcattt ttcacttctg atgagatctc
      301 agctgttatc tgataaaatt gaacaactat tactaggctc tgctgagtaa agccccttga
      361 ctgctcttaa cagaaatcct atacactcca ctttgtcagc agttttgaat tcatcgtcgc
      421 aacaagatga taggaataat cttaccaact gagattgaca gttcatttca gaaatcaata
      481 tttacaattt acttctttca aagttcattc gagagaagat tccatattat ccctctccaa
      541 ataagctgat catatctcag tcgtccctgg aatgagtttt cccaaaatgt gaatttttgg
      601 taaaaatcaa tgtcagcatt gtgcacttta atctcgccta tgatgacagt aaatctttat
      661 ctttttatgg gtaaacgcca ctggctgctg acaccatttc ctcgcagaac aaagcctggt
      721 ccatgtggac tatggtagat acatggaact gtaatgtggc tggacatgtt tcactggggt
      781 c
//
LOCUS       KCLA01003364             382 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54894upu ultra-conserved element locus uce-39,
            sequence.
ACCESSION   KCLA01003364
VERSION     KCLA01003364.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 382)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..382
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54894upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>382
                     /note="ultra-conserved element locus uce-39"
BASE COUNT          128 a           75 c           60 g          119 t
ORIGIN      
        1 tcagttgggt tacgcccgta aagctagtgt ttctgtattt attccttatt tagaaagtac
       61 tatttgtttt atttttattc acaataaact catgacactt ctgccccctc ataacagaca
      121 cctaacaatg aagcagcttc tattaagaag cagaacatca gcctctggca tcttattctg
      181 ttgttccatc ttttttgcta gggagaattc atttgtttct taattaagaa aaacaccaat
      241 agcatgaaaa atctgcttat ggtacctgaa tggtaattag gtgaaaggta aaaaagaaac
      301 acacacatac attccactag cagccaaaat gaacttgagc tgataaaaat gaactaaact
      361 acccttgcat aaatcgaggc tg
//
LOCUS       KCLA01003365             660 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54910upu ultra-conserved element locus uce-3778,
            sequence.
ACCESSION   KCLA01003365
VERSION     KCLA01003365.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 660)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..660
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54910upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>660
                     /note="ultra-conserved element locus uce-3778"
BASE COUNT          126 a          197 c          162 g          175 t
ORIGIN      
        1 gatccccccc ctcttagagc agcaggagat ctgaaacctt cctggctgac agcagggatt
       61 tggggtgccc cccctcactc tgacgctccg agggtcccac aggagctgct gcatctctgc
      121 tgcccttggc tggggccgtc tcccgccgcc gccgctggcc gcgcgcatct cgcgggctca
      181 ttgtgctgag cactaatgcc attatcctcc cgaaattgaa atcaagtctg aacctctccc
      241 gtttccctgg gagggaattg gggttagata ttcctgcgtg cagcagcctt ctatttcagg
      301 cccagcattt aattatgatc ggtgtgttag tgcccaccag agcatcccaa attgtcatta
      361 tgttattctg ctgagcctaa tttaattggc aagttgtcac aaaggcaatt atccgtcatt
      421 tattttgttg ccataaccac atcttggaga gcacctgctg tctgaagtgg aaaggctccg
      481 cagtctctcg gtcctggatt tcttcccctc tcctgacaca aagacatcgc ttcctcctct
      541 cggttagaaa tagctgccct gtttcacccc catgaggcta cagatgctgg aggagctgct
      601 ctgtttcagc cccatgaggc tggggatgct ggaggagctg ccctgcttca tcctcatgag
//
LOCUS       KCLA01003366             422 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54926upu ultra-conserved element locus uce-1243,
            sequence.
ACCESSION   KCLA01003366
VERSION     KCLA01003366.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 422)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..422
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54926upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>422
                     /note="ultra-conserved element locus uce-1243"
BASE COUNT          136 a           82 c           56 g          148 t
ORIGIN      
        1 gcaatcatta ctgcgtgttc tatttccacg cagaaacaat ttcattttat atcacaaaat
       61 gcattttttt ataagtaagc tttaagcaaa ttagaatact tgatatggtt tttgaacttt
      121 tgccaggcat gtggtcccaa gccagttcct cctatttgca ctgtagcatt tatccatttc
      181 caaatatgag aagatttatc tgtcagattc tgtgcaaatt cagtacacag ataatttgta
      241 aaaagcttcc tttttcaaaa tgttctgtgg tttttctaat ctcatctctt ttctaatttc
      301 ctaatcatat aaccttgaag tctaaagaca caggctgtga taatctgtgt aaactgtctt
      361 tattgttatc acagacattt atgaaaaaaa aacacaacac aacacacaca cacgcagtca
      421 aa
//
LOCUS       KCLA01003367             504 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54942upu ultra-conserved element locus uce-1403,
            sequence.
ACCESSION   KCLA01003367
VERSION     KCLA01003367.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 504)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..504
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54942upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>504
                     /note="ultra-conserved element locus uce-1403"
BASE COUNT          120 a          124 c          121 g          139 t
ORIGIN      
        1 ggatggagcc cgctgggagc gggagctggt gtggatgcag agcacagagg agtgctgcag
       61 gcagctctgg gatctctctg cccacgtcca gcgtgctgct cgtcccttcc ttccgcctgg
      121 gtggcttcac aaatcttcat ctgttacttt ccagcctctc catcgctcct gcaggcccac
      181 ccaccaagtg tccgggagtc actcgtcaac aacaaacagt taaaaaggag agaataggct
      241 ggaaatatca atgcactctg gtaacaataa accccgctct taatttatgc taatatgtgg
      301 ggttgtggtg acagtaagaa caaaattaca gagtggcttt ctagctggta attatccctc
      361 cattttcgtt gctcgggaag atggacacac aattatgctc tcttgctgta tattaatacg
      421 gattcttgac atcttcagca gacctggagc tgtcatcggg ctttttgtct actttaattg
      481 aaaattaatg gttactgcgt tacc
//
LOCUS       KCLA01003368             690 bp    DNA     linear   VRT 06-MAR-2019
DEFINITION  TLS: Upupa epops 54956upu ultra-conserved element locus uce-1021,
            sequence.
ACCESSION   KCLA01003368
VERSION     KCLA01003368.1
DBLINK      BioProject: PRJNA494020
            BioSample: SAMN10147555
KEYWORDS    TLS; Targeted Locus Study.
SOURCE      Upupa epops (Eurasian hoopoe)
  ORGANISM  Upupa epops
            Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi;
            Archelosauria; Archosauria; Dinosauria; Saurischia; Theropoda;
            Coelurosauria; Aves; Neognathae; Neoaves; Telluraves;
            Coraciimorphae; Bucerotiformes; Upupidae; Upupa.
REFERENCE   1  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Rapid Laurasian diversification of a pantropical bird family during
            the Oligocene-Miocene transition
  JOURNAL   Ibis (Lond. 1859) (2019) In press
REFERENCE   2  (bases 1 to 690)
  AUTHORS   Oliveros,C.H., Andersen,M.J., Hosner,P.A., Mauck,W.M. III,
            Sheldon,F.H., Cracraft,J. and Moyle,R.G.
  TITLE     Direct Submission
  JOURNAL   Submitted (26-NOV-2018) Department of Biological Sciences,
            Louisiana State University, 287 Life Sciences Building, Baton
            Rouge, LA 70803, United States of America
COMMENT     We identified thousands of ultra-conserved elements (UCEs) in 18
            trogon species to examine trogon diversification history.  All of
            the UCEs from one bird are included in a single TLS project.
            
            ##Assembly-Data-START##
            Assembly Method       :: Trinity ver. r2013.08.14
            Sequencing Technology :: Illumina HiSeq
            ##Assembly-Data-END##
FEATURES             Location/Qualifiers
     source          1..690
                     /organism="Upupa epops"
                     /mol_type="genomic DNA"
                     /submitter_seqid="54956upu"
                     /db_xref="taxon:57439"
                     /tissue_type="muscle"
                     /geo_loc_name="Mongolia"
     misc_feature    <1..>690
                     /note="ultra-conserved element locus uce-1021"
BASE COUNT          220 a          131 c          167 g          172 t
ORIGIN      
        1 cagcgcctgc agctggggtc acggccacgg aacagccacg ggaacgagga gggagagagg
       61 caaagggtgg gggagagggg aggaaagcaa aaataaagtg aaaatattaa attcccaagt
      121 cagggtagga gaggaaatta atggcagtgt tcaagaagaa tgatggaggg aaatatagaa
      181 agcagtcaat agcccattct gtgctgtacg ggcctgacag gaatttcaca gtctcttggt
      241 ttttcagccc actcatgtgc actcagcaga aaccagtcac atctggctgc caggatgggg
      301 ggttaatttt ctctaaatgc ctcagcagtt ttgttctagc tgaggcaaac tctgtgactg
      361 caaagctgat gagtaaaata tttctacttc acccagttta actcaaaacc gatagcctcg
      421 ggacatattg aacctttctt aaaagaatta tcttttgaag cttttggaat gacacatcag
      481 gtcagactaa agtttaaaat gcaagtttaa gattttgatg gacaccaggg ctgtgttttt
      541 ttccccgtgt aaagcttatc atagctcagc aatgtgtgct ttagtgcatg acaaaactaa
      601 agagaattaa cttagccatc aactgctcag ggagaacaat aacaggaaag aaatttccag
      661 atagaagttc ctattaatct acccagctat
//
